Query 007057
Match_columns 620
No_of_seqs 468 out of 4572
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 18:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 3.5E-83 7.6E-88 739.5 57.7 537 1-592 26-563 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 8E-81 1.7E-85 718.0 58.7 532 1-592 26-558 (771)
3 TIGR01070 mutS1 DNA mismatch r 100.0 1.3E-71 2.8E-76 646.7 44.6 485 1-539 284-782 (840)
4 PRK05399 DNA mismatch repair p 100.0 2.9E-69 6.3E-74 630.2 44.3 486 1-539 298-797 (854)
5 COG1193 Mismatch repair ATPase 100.0 5.5E-66 1.2E-70 585.1 41.0 521 1-586 24-545 (753)
6 COG0249 MutS Mismatch repair A 100.0 8.7E-66 1.9E-70 592.2 40.8 491 1-541 296-799 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 2.2E-51 4.7E-56 442.0 36.2 493 2-538 495-1027(1070)
8 KOG0219 Mismatch repair ATPase 100.0 1.2E-46 2.7E-51 412.7 34.8 488 1-538 326-834 (902)
9 KOG0221 Mismatch repair ATPase 100.0 4.8E-44 1E-48 380.5 29.3 487 2-540 281-795 (849)
10 KOG0217 Mismatch repair ATPase 100.0 2.7E-43 5.9E-48 393.5 30.2 491 1-538 574-1089(1125)
11 KOG0220 Mismatch repair ATPase 100.0 1.7E-42 3.6E-47 374.9 34.2 482 1-538 294-811 (867)
12 PF00488 MutS_V: MutS domain V 100.0 2.2E-40 4.8E-45 334.3 13.4 228 273-538 1-232 (235)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 2E-37 4.2E-42 310.6 16.6 194 342-537 22-220 (222)
14 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.8E-37 3.9E-42 306.3 14.6 184 340-523 17-200 (200)
15 cd03286 ABC_MSH6_euk MutS6 hom 100.0 3.7E-37 7.9E-42 306.9 13.3 190 340-531 18-218 (218)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.4E-36 3.1E-41 303.5 13.4 188 342-531 23-222 (222)
17 cd03284 ABC_MutS1 MutS1 homolo 100.0 2.5E-35 5.5E-40 294.2 15.3 194 340-534 19-215 (216)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 9.9E-35 2.2E-39 287.2 14.9 179 342-522 21-203 (204)
19 smart00533 MUTSd DNA-binding d 100.0 5.7E-34 1.2E-38 298.6 20.7 284 1-301 15-306 (308)
20 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.7E-34 3.7E-39 287.7 14.6 183 340-523 17-213 (213)
21 smart00534 MUTSac ATPase domai 100.0 2.4E-34 5.1E-39 280.7 13.1 181 353-534 1-184 (185)
22 cd03243 ABC_MutS_homologs The 100.0 7.7E-34 1.7E-38 280.8 13.5 182 340-523 19-202 (202)
23 COG1120 FepC ABC-type cobalami 100.0 4E-31 8.7E-36 266.6 17.0 167 326-494 2-220 (258)
24 COG1126 GlnQ ABC-type polar am 100.0 6.8E-31 1.5E-35 253.8 16.9 167 326-494 2-217 (240)
25 cd03283 ABC_MutS-like MutS-lik 100.0 5.1E-31 1.1E-35 260.0 15.4 181 340-523 15-199 (199)
26 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.8E-31 1.5E-35 263.6 14.8 165 326-493 4-218 (254)
27 PRK10636 putative ABC transpor 100.0 1.1E-29 2.4E-34 291.1 25.2 266 324-594 310-626 (638)
28 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-30 5.3E-35 253.5 16.0 168 325-495 7-228 (263)
29 PRK11147 ABC transporter ATPas 100.0 3E-29 6.6E-34 287.8 23.0 265 324-593 317-629 (635)
30 COG1131 CcmA ABC-type multidru 100.0 1E-28 2.2E-33 257.5 16.5 168 326-495 4-219 (293)
31 COG1116 TauB ABC-type nitrate/ 100.0 1.5E-28 3.3E-33 243.8 16.5 162 326-489 3-207 (248)
32 COG4152 ABC-type uncharacteriz 100.0 6.6E-29 1.4E-33 243.1 13.5 168 326-495 2-212 (300)
33 COG1136 SalX ABC-type antimicr 100.0 3.1E-28 6.6E-33 241.2 16.5 164 327-491 2-220 (226)
34 COG4555 NatA ABC-type Na+ tran 100.0 9.5E-29 2.1E-33 235.8 11.9 166 326-494 1-214 (245)
35 COG3638 ABC-type phosphate/pho 100.0 4.4E-28 9.5E-33 237.1 15.6 168 326-495 3-230 (258)
36 PRK13536 nodulation factor exp 100.0 5.4E-28 1.2E-32 257.0 17.2 169 325-495 40-254 (340)
37 PRK13537 nodulation ABC transp 100.0 5.6E-28 1.2E-32 253.7 17.2 169 325-495 6-220 (306)
38 COG1125 OpuBA ABC-type proline 100.0 4.7E-28 1E-32 238.6 15.2 168 326-494 1-217 (309)
39 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-27 2.6E-32 238.2 16.0 165 327-493 1-211 (213)
40 TIGR01288 nodI ATP-binding ABC 99.9 2.5E-27 5.4E-32 248.7 17.4 168 325-494 3-216 (303)
41 cd03214 ABC_Iron-Siderophores_ 99.9 2.4E-27 5.2E-32 230.2 15.8 155 329-493 2-178 (180)
42 cd03265 ABC_DrrA DrrA is the A 99.9 2.6E-27 5.5E-32 237.1 16.4 166 327-494 1-213 (220)
43 cd03226 ABC_cobalt_CbiO_domain 99.9 1.7E-27 3.6E-32 235.8 14.5 161 329-491 2-204 (205)
44 TIGR00960 3a0501s02 Type II (G 99.9 2.2E-27 4.9E-32 236.7 15.2 162 327-490 2-215 (216)
45 PRK11247 ssuB aliphatic sulfon 99.9 3.7E-27 8E-32 241.6 17.1 170 324-494 10-215 (257)
46 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.4E-27 7.4E-32 236.2 16.3 167 327-494 1-215 (220)
47 cd03225 ABC_cobalt_CbiO_domain 99.9 2.9E-27 6.2E-32 235.0 15.5 159 329-489 2-210 (211)
48 cd03261 ABC_Org_Solvent_Resist 99.9 4.2E-27 9E-32 237.9 16.3 166 327-494 1-218 (235)
49 cd03301 ABC_MalK_N The N-termi 99.9 4.8E-27 1E-31 233.8 16.3 165 327-493 1-211 (213)
50 cd03268 ABC_BcrA_bacitracin_re 99.9 4.5E-27 9.7E-32 233.2 15.9 165 327-493 1-206 (208)
51 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.3E-27 7.1E-32 235.8 15.0 162 327-490 1-217 (218)
52 cd03269 ABC_putative_ATPase Th 99.9 5.1E-27 1.1E-31 233.1 16.1 165 327-493 1-208 (210)
53 COG1122 CbiO ABC-type cobalt t 99.9 3.2E-27 7E-32 237.5 14.5 168 326-495 3-221 (235)
54 cd03266 ABC_NatA_sodium_export 99.9 6E-27 1.3E-31 233.9 16.1 165 327-493 2-216 (218)
55 COG2884 FtsE Predicted ATPase 99.9 3.7E-27 8.1E-32 223.2 13.6 168 326-495 1-219 (223)
56 cd03218 ABC_YhbG The ABC trans 99.9 6.7E-27 1.4E-31 235.8 16.4 166 327-494 1-214 (232)
57 COG1137 YhbG ABC-type (unclass 99.9 8.1E-28 1.8E-32 229.3 8.9 168 325-494 3-220 (243)
58 cd03219 ABC_Mj1267_LivG_branch 99.9 6.9E-27 1.5E-31 236.2 16.1 166 327-494 1-224 (236)
59 TIGR02315 ABC_phnC phosphonate 99.9 1.1E-26 2.3E-31 235.9 17.5 166 327-494 2-227 (243)
60 TIGR02673 FtsE cell division A 99.9 7.2E-27 1.6E-31 232.7 15.9 162 327-490 2-214 (214)
61 cd03298 ABC_ThiQ_thiamine_tran 99.9 8.6E-27 1.9E-31 231.7 16.2 166 327-493 1-209 (211)
62 PRK09536 btuD corrinoid ABC tr 99.9 7E-27 1.5E-31 252.8 16.7 167 326-494 3-220 (402)
63 cd03258 ABC_MetN_methionine_tr 99.9 1.2E-26 2.6E-31 234.1 17.1 166 327-494 2-222 (233)
64 PRK13638 cbiO cobalt transport 99.9 1E-26 2.2E-31 240.3 16.8 166 327-494 2-217 (271)
65 COG3839 MalK ABC-type sugar tr 99.9 1.1E-26 2.5E-31 242.7 17.0 166 326-493 3-214 (338)
66 TIGR03522 GldA_ABC_ATP gliding 99.9 1E-26 2.2E-31 243.8 16.7 165 327-494 3-213 (301)
67 PRK11248 tauB taurine transpor 99.9 1.5E-26 3.2E-31 237.0 17.2 167 327-494 2-212 (255)
68 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.6E-26 3.4E-31 233.9 16.7 166 327-494 2-213 (236)
69 cd03296 ABC_CysA_sulfate_impor 99.9 2.2E-26 4.8E-31 233.2 17.8 166 327-494 3-218 (239)
70 cd03256 ABC_PhnC_transporter A 99.9 1.9E-26 4.1E-31 233.7 17.2 166 327-494 1-226 (241)
71 cd03235 ABC_Metallic_Cations A 99.9 1.1E-26 2.4E-31 231.2 15.2 159 329-489 2-208 (213)
72 COG3842 PotA ABC-type spermidi 99.9 8.3E-27 1.8E-31 245.0 14.9 168 325-493 4-217 (352)
73 cd03262 ABC_HisP_GlnQ_permease 99.9 1.3E-26 2.8E-31 230.5 15.5 162 327-490 1-212 (213)
74 COG0411 LivG ABC-type branched 99.9 5.4E-27 1.2E-31 231.1 12.3 159 326-494 4-231 (250)
75 cd03216 ABC_Carb_Monos_I This 99.9 5.8E-27 1.3E-31 224.0 12.2 155 327-493 1-162 (163)
76 PRK11264 putative amino-acid A 99.9 2.4E-26 5.3E-31 234.4 17.5 167 326-494 3-225 (250)
77 PRK10908 cell division protein 99.9 1.8E-26 3.8E-31 231.3 16.2 164 327-492 2-216 (222)
78 TIGR02211 LolD_lipo_ex lipopro 99.9 2.2E-26 4.7E-31 230.3 16.4 163 327-491 2-219 (221)
79 PRK13647 cbiO cobalt transport 99.9 2.4E-26 5.1E-31 237.9 17.1 168 326-495 4-220 (274)
80 cd03224 ABC_TM1139_LivF_branch 99.9 1.9E-26 4.2E-31 230.8 15.9 166 327-494 1-213 (222)
81 cd03292 ABC_FtsE_transporter F 99.9 1.5E-26 3.2E-31 230.3 14.6 162 327-490 1-213 (214)
82 PRK09493 glnQ glutamine ABC tr 99.9 2.9E-26 6.2E-31 232.5 16.8 166 327-494 2-217 (240)
83 PRK11831 putative ABC transpor 99.9 2.7E-26 5.9E-31 236.8 16.9 167 326-494 7-225 (269)
84 cd03263 ABC_subfamily_A The AB 99.9 2.8E-26 6.1E-31 229.3 16.4 165 327-494 1-213 (220)
85 PRK11300 livG leucine/isoleuci 99.9 3.8E-26 8.2E-31 233.6 17.7 168 325-494 4-235 (255)
86 COG0488 Uup ATPase components 99.9 1.2E-25 2.7E-30 249.4 23.1 172 326-503 3-240 (530)
87 PRK11650 ugpC glycerol-3-phosp 99.9 4.1E-26 8.8E-31 244.1 18.5 168 326-494 3-216 (356)
88 PRK11231 fecE iron-dicitrate t 99.9 4.1E-26 8.8E-31 233.6 17.7 167 326-494 2-219 (255)
89 TIGR02314 ABC_MetN D-methionin 99.9 3.8E-26 8.3E-31 242.7 18.1 166 327-494 2-222 (343)
90 PRK10771 thiQ thiamine transpo 99.9 3.7E-26 8E-31 230.6 17.0 167 327-494 2-211 (232)
91 TIGR01188 drrA daunorubicin re 99.9 2.2E-26 4.8E-31 241.4 15.8 158 335-494 2-205 (302)
92 PRK13637 cbiO cobalt transport 99.9 4E-26 8.6E-31 237.8 17.5 167 327-495 3-227 (287)
93 PRK11153 metN DL-methionine tr 99.9 2.7E-26 5.8E-31 244.7 16.6 166 327-494 2-222 (343)
94 TIGR03258 PhnT 2-aminoethylpho 99.9 4.4E-26 9.5E-31 244.1 18.1 169 324-494 3-220 (362)
95 COG1124 DppF ABC-type dipeptid 99.9 3E-26 6.5E-31 225.7 15.4 168 326-494 3-223 (252)
96 PRK13641 cbiO cobalt transport 99.9 3.9E-26 8.5E-31 237.8 17.2 166 327-494 3-226 (287)
97 PRK11000 maltose/maltodextrin 99.9 4.4E-26 9.6E-31 245.1 18.1 168 326-494 3-215 (369)
98 PRK10584 putative ABC transpor 99.9 4.4E-26 9.4E-31 229.3 16.9 167 325-492 5-225 (228)
99 PRK13548 hmuV hemin importer A 99.9 4.6E-26 1E-30 233.7 17.3 167 326-494 2-222 (258)
100 TIGR03740 galliderm_ABC gallid 99.9 3.2E-26 7E-31 229.6 15.8 166 327-494 1-205 (223)
101 TIGR03265 PhnT2 putative 2-ami 99.9 6E-26 1.3E-30 242.5 18.3 168 326-494 4-216 (353)
102 cd03260 ABC_PstB_phosphate_tra 99.9 5.9E-26 1.3E-30 228.2 17.2 165 327-494 1-221 (227)
103 COG1135 AbcC ABC-type metal io 99.9 4.1E-26 8.9E-31 231.0 16.0 167 326-494 1-223 (339)
104 PRK11432 fbpC ferric transport 99.9 7E-26 1.5E-30 241.7 18.6 169 325-494 5-218 (351)
105 PRK10895 lipopolysaccharide AB 99.9 4.7E-26 1E-30 231.1 16.3 167 326-494 3-218 (241)
106 PRK13650 cbiO cobalt transport 99.9 6.9E-26 1.5E-30 235.1 17.8 167 326-494 4-221 (279)
107 TIGR03410 urea_trans_UrtE urea 99.9 5.1E-26 1.1E-30 229.1 16.3 166 327-494 1-213 (230)
108 cd03257 ABC_NikE_OppD_transpor 99.9 7.3E-26 1.6E-30 227.4 17.3 166 327-493 2-226 (228)
109 COG3840 ThiQ ABC-type thiamine 99.9 3.3E-26 7.2E-31 215.2 13.7 160 327-495 2-212 (231)
110 PRK10253 iron-enterobactin tra 99.9 8.5E-26 1.8E-30 232.6 18.0 168 325-494 6-225 (265)
111 PRK13644 cbiO cobalt transport 99.9 6.8E-26 1.5E-30 234.5 17.3 166 327-494 2-216 (274)
112 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.7E-26 5.9E-31 230.6 13.7 163 327-493 23-222 (224)
113 PRK11614 livF leucine/isoleuci 99.9 4.9E-26 1.1E-30 230.3 15.6 167 326-494 5-218 (237)
114 PRK11629 lolD lipoprotein tran 99.9 8.3E-26 1.8E-30 228.2 16.9 167 326-494 5-226 (233)
115 COG0488 Uup ATPase components 99.9 1.4E-25 3.1E-30 248.9 20.4 170 323-500 318-522 (530)
116 cd03295 ABC_OpuCA_Osmoprotecti 99.9 6.7E-26 1.5E-30 230.1 16.3 166 327-494 1-217 (242)
117 cd03264 ABC_drug_resistance_li 99.9 6.4E-26 1.4E-30 225.4 15.7 163 327-493 1-209 (211)
118 PRK13651 cobalt transporter AT 99.9 7.6E-26 1.6E-30 237.4 17.0 167 327-495 3-247 (305)
119 TIGR03873 F420-0_ABC_ATP propo 99.9 7.5E-26 1.6E-30 231.8 16.6 166 327-494 2-218 (256)
120 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-25 2.9E-30 227.8 18.3 166 326-494 2-223 (242)
121 PRK14250 phosphate ABC transpo 99.9 9.8E-26 2.1E-30 228.9 17.2 167 326-494 3-213 (241)
122 TIGR01277 thiQ thiamine ABC tr 99.9 9.2E-26 2E-30 224.8 16.4 166 328-494 2-210 (213)
123 PRK09984 phosphonate/organopho 99.9 1.2E-25 2.6E-30 231.1 17.7 167 326-494 4-234 (262)
124 PRK13634 cbiO cobalt transport 99.9 9.3E-26 2E-30 235.3 17.0 167 327-495 3-228 (290)
125 PRK11124 artP arginine transpo 99.9 1.2E-25 2.6E-30 228.2 17.3 167 326-494 2-222 (242)
126 COG1117 PstB ABC-type phosphat 99.9 9.9E-26 2.2E-30 217.2 15.7 166 325-494 6-229 (253)
127 PRK09452 potA putrescine/sperm 99.9 1.4E-25 3E-30 241.2 18.5 169 325-494 13-226 (375)
128 PRK13636 cbiO cobalt transport 99.9 1.3E-25 2.9E-30 233.4 17.6 168 325-494 4-223 (283)
129 PRK10575 iron-hydroxamate tran 99.9 1.4E-25 3E-30 231.1 17.4 168 325-494 10-229 (265)
130 PRK13639 cbiO cobalt transport 99.9 1.3E-25 2.8E-30 232.6 17.2 166 327-494 2-218 (275)
131 PRK10619 histidine/lysine/argi 99.9 1.4E-25 3.1E-30 229.8 17.2 168 325-494 4-233 (257)
132 TIGR01978 sufC FeS assembly AT 99.9 1.3E-25 2.8E-30 227.8 16.7 166 327-494 1-226 (243)
133 PRK13643 cbiO cobalt transport 99.9 1.3E-25 2.8E-30 234.0 17.1 167 327-495 2-226 (288)
134 PRK10851 sulfate/thiosulfate t 99.9 1.9E-25 4.2E-30 238.6 18.7 167 326-494 2-218 (353)
135 PRK09544 znuC high-affinity zi 99.9 1.1E-25 2.4E-30 230.0 16.1 165 326-493 4-200 (251)
136 PRK13635 cbiO cobalt transport 99.9 1.5E-25 3.3E-30 232.4 17.3 167 326-494 5-221 (279)
137 PRK10938 putative molybdenum t 99.9 1.1E-25 2.5E-30 251.1 17.4 167 326-494 3-216 (490)
138 COG0410 LivF ABC-type branched 99.9 1.6E-25 3.6E-30 219.1 16.2 168 326-495 3-219 (237)
139 PRK13652 cbiO cobalt transport 99.9 1.8E-25 3.8E-30 231.7 17.5 167 326-494 3-219 (277)
140 PRK11607 potG putrescine trans 99.9 2.4E-25 5.2E-30 239.6 18.7 170 324-494 17-231 (377)
141 cd03245 ABCC_bacteriocin_expor 99.9 1.6E-25 3.6E-30 223.8 16.1 164 327-493 3-218 (220)
142 PRK13543 cytochrome c biogenes 99.9 1.6E-25 3.4E-30 223.4 15.8 164 323-488 8-212 (214)
143 TIGR02769 nickel_nikE nickel i 99.9 2.5E-25 5.4E-30 229.1 17.7 168 326-494 2-232 (265)
144 TIGR03005 ectoine_ehuA ectoine 99.9 2E-25 4.4E-30 228.0 16.7 167 327-494 1-228 (252)
145 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.4E-25 2.9E-30 231.7 15.5 166 328-494 26-242 (269)
146 PRK11701 phnK phosphonate C-P 99.9 2.3E-25 5E-30 228.5 17.0 168 326-494 6-233 (258)
147 cd03297 ABC_ModC_molybdenum_tr 99.9 2.5E-25 5.3E-30 221.8 16.7 160 331-493 5-212 (214)
148 PRK14268 phosphate ABC transpo 99.9 2.6E-25 5.7E-30 228.0 17.3 166 326-494 12-234 (258)
149 PRK13649 cbiO cobalt transport 99.9 2.8E-25 6.1E-30 230.5 17.7 166 327-494 3-226 (280)
150 PRK13640 cbiO cobalt transport 99.9 2.6E-25 5.7E-30 231.1 17.2 168 325-494 4-224 (282)
151 PRK14273 phosphate ABC transpo 99.9 3.2E-25 7E-30 226.8 17.7 167 325-494 6-230 (254)
152 TIGR03608 L_ocin_972_ABC putat 99.9 1.3E-25 2.7E-30 222.3 14.1 155 329-485 1-205 (206)
153 PRK13547 hmuV hemin importer A 99.9 2.8E-25 6.1E-30 229.6 17.1 166 327-494 2-236 (272)
154 PRK15112 antimicrobial peptide 99.9 2.7E-25 5.7E-30 229.2 16.8 167 326-494 4-231 (267)
155 TIGR00972 3a0107s01c2 phosphat 99.9 2.7E-25 5.9E-30 226.4 16.7 165 327-494 2-224 (247)
156 PRK13645 cbiO cobalt transport 99.9 2.9E-25 6.4E-30 231.5 17.2 169 325-494 5-232 (289)
157 PRK14242 phosphate transporter 99.9 3.8E-25 8.2E-30 226.1 17.6 167 325-494 5-229 (253)
158 PRK14248 phosphate ABC transpo 99.9 4.4E-25 9.5E-30 227.6 18.1 168 324-494 19-244 (268)
159 PRK10247 putative ABC transpor 99.9 2.6E-25 5.5E-30 223.6 15.9 162 325-487 6-211 (225)
160 cd03246 ABCC_Protease_Secretio 99.9 2.3E-25 5.1E-30 214.9 15.0 152 327-490 1-172 (173)
161 PRK13538 cytochrome c biogenes 99.9 2.4E-25 5.3E-30 220.3 15.5 153 327-481 2-196 (204)
162 PRK15056 manganese/iron transp 99.9 2.9E-25 6.3E-30 229.5 16.6 166 326-494 6-222 (272)
163 PRK11144 modC molybdate transp 99.9 3E-25 6.4E-30 237.5 17.2 166 327-494 2-210 (352)
164 cd03230 ABC_DR_subfamily_A Thi 99.9 3E-25 6.4E-30 214.1 15.6 153 327-490 1-172 (173)
165 cd03300 ABC_PotA_N PotA is an 99.9 3.3E-25 7.2E-30 223.7 16.4 166 327-494 1-212 (232)
166 PRK10418 nikD nickel transport 99.9 3.8E-25 8.3E-30 226.3 16.9 168 326-494 4-222 (254)
167 PRK10636 putative ABC transpor 99.9 2.1E-25 4.6E-30 255.8 16.6 167 327-498 2-231 (638)
168 PRK13632 cbiO cobalt transport 99.9 4E-25 8.6E-30 228.4 17.1 167 326-494 7-223 (271)
169 PRK13633 cobalt transporter AT 99.9 4.2E-25 9.2E-30 229.3 17.3 167 326-494 4-225 (280)
170 PRK13646 cbiO cobalt transport 99.9 4.5E-25 9.7E-30 229.8 17.5 166 327-494 3-227 (286)
171 PRK13631 cbiO cobalt transport 99.9 4.8E-25 1E-29 232.8 17.9 170 324-495 19-258 (320)
172 PRK13648 cbiO cobalt transport 99.9 4.4E-25 9.5E-30 227.8 17.2 168 325-494 6-223 (269)
173 TIGR02323 CP_lyasePhnK phospho 99.9 5.2E-25 1.1E-29 225.1 17.5 168 326-494 3-230 (253)
174 cd03215 ABC_Carb_Monos_II This 99.9 3E-25 6.5E-30 215.9 15.0 150 325-490 3-181 (182)
175 TIGR02982 heterocyst_DevA ABC 99.9 4.1E-25 9E-30 221.2 16.2 164 326-491 1-219 (220)
176 PRK10744 pstB phosphate transp 99.9 6.4E-25 1.4E-29 225.5 18.0 168 324-494 11-236 (260)
177 PRK13549 xylose transporter AT 99.9 2.8E-25 6.1E-30 248.9 16.7 167 326-494 5-224 (506)
178 PRK15439 autoinducer 2 ABC tra 99.9 2.8E-25 6E-30 249.2 16.5 167 326-494 11-221 (510)
179 TIGR00968 3a0106s01 sulfate AB 99.9 4.7E-25 1E-29 223.4 16.6 166 327-494 1-212 (237)
180 cd03231 ABC_CcmA_heme_exporter 99.9 3.2E-25 7E-30 219.0 15.1 157 327-485 1-197 (201)
181 COG1118 CysA ABC-type sulfate/ 99.9 2.8E-25 6.1E-30 224.5 14.8 166 327-493 3-218 (345)
182 cd03229 ABC_Class3 This class 99.9 2.3E-25 5E-30 215.9 13.5 153 327-489 1-177 (178)
183 PRK14247 phosphate ABC transpo 99.9 6.7E-25 1.4E-29 223.9 17.4 166 326-494 3-226 (250)
184 PRK14274 phosphate ABC transpo 99.9 8E-25 1.7E-29 224.5 18.0 168 324-494 10-235 (259)
185 cd03267 ABC_NatA_like Similar 99.9 4E-25 8.6E-30 223.8 15.4 159 334-493 29-234 (236)
186 PRK14275 phosphate ABC transpo 99.9 7.7E-25 1.7E-29 228.0 17.8 169 323-494 36-262 (286)
187 PRK11022 dppD dipeptide transp 99.9 4.8E-25 1E-29 233.4 16.5 167 326-494 3-235 (326)
188 PRK14245 phosphate ABC transpo 99.9 9.7E-25 2.1E-29 222.7 18.2 166 326-494 3-226 (250)
189 PRK15079 oligopeptide ABC tran 99.9 6.6E-25 1.4E-29 232.7 17.3 168 325-494 7-243 (331)
190 PRK10762 D-ribose transporter 99.9 6E-25 1.3E-29 246.0 18.0 167 326-494 4-222 (501)
191 PRK13539 cytochrome c biogenes 99.9 4.9E-25 1.1E-29 218.8 15.1 159 326-487 2-199 (207)
192 PRK10070 glycine betaine trans 99.9 5.5E-25 1.2E-29 237.9 16.8 152 342-494 46-246 (400)
193 PRK14267 phosphate ABC transpo 99.9 8.9E-25 1.9E-29 223.3 17.3 166 326-494 4-229 (253)
194 cd03254 ABCC_Glucan_exporter_l 99.9 8.1E-25 1.8E-29 220.1 16.7 166 326-494 2-218 (229)
195 PRK14235 phosphate transporter 99.9 1E-24 2.2E-29 224.9 17.8 168 324-494 17-243 (267)
196 cd03247 ABCC_cytochrome_bd The 99.9 8.1E-25 1.8E-29 212.0 16.0 156 327-493 1-176 (178)
197 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.8E-25 6.1E-30 219.3 13.0 158 327-494 1-186 (200)
198 cd03232 ABC_PDR_domain2 The pl 99.9 9.2E-25 2E-29 214.3 16.5 158 326-493 3-190 (192)
199 PRK11308 dppF dipeptide transp 99.9 6.4E-25 1.4E-29 232.5 16.3 168 325-494 4-236 (327)
200 PRK14256 phosphate ABC transpo 99.9 1.1E-24 2.4E-29 222.6 17.4 167 325-494 3-228 (252)
201 PRK14240 phosphate transporter 99.9 1.3E-24 2.8E-29 221.7 17.8 166 326-494 3-226 (250)
202 PRK09700 D-allose transporter 99.9 8.1E-25 1.7E-29 245.5 17.9 167 326-494 5-226 (510)
203 TIGR03269 met_CoM_red_A2 methy 99.9 7.1E-25 1.5E-29 246.5 17.4 166 327-493 1-249 (520)
204 TIGR01186 proV glycine betaine 99.9 5.6E-25 1.2E-29 235.2 15.7 159 335-494 2-211 (363)
205 PRK14239 phosphate transporter 99.9 1.2E-24 2.5E-29 222.2 17.3 166 326-494 5-228 (252)
206 TIGR02142 modC_ABC molybdenum 99.9 7.6E-25 1.7E-29 234.6 16.7 162 331-494 4-213 (354)
207 cd03252 ABCC_Hemolysin The ABC 99.9 7.8E-25 1.7E-29 221.5 15.9 165 327-494 1-217 (237)
208 PRK09580 sufC cysteine desulfu 99.9 1.1E-24 2.4E-29 221.7 16.9 165 327-494 2-227 (248)
209 cd03228 ABCC_MRP_Like The MRP 99.9 9.2E-25 2E-29 210.3 15.2 150 327-489 1-170 (171)
210 cd03251 ABCC_MsbA MsbA is an e 99.9 8.1E-25 1.8E-29 220.9 15.4 165 327-494 1-217 (234)
211 PRK14237 phosphate transporter 99.9 1.6E-24 3.4E-29 223.4 17.8 167 325-494 19-243 (267)
212 PRK13540 cytochrome c biogenes 99.9 7.5E-25 1.6E-29 216.2 14.7 155 327-483 2-196 (200)
213 PRK14269 phosphate ABC transpo 99.9 1.6E-24 3.6E-29 220.6 17.6 166 326-494 2-222 (246)
214 PRK14262 phosphate ABC transpo 99.9 1.7E-24 3.6E-29 220.9 17.5 166 326-494 3-226 (250)
215 cd03213 ABCG_EPDR ABCG transpo 99.9 1.7E-24 3.7E-29 212.8 16.9 158 326-493 3-192 (194)
216 PRK14271 phosphate ABC transpo 99.9 2E-24 4.4E-29 223.7 18.3 172 320-494 15-243 (276)
217 PRK10419 nikE nickel transport 99.9 1.3E-24 2.8E-29 224.2 16.8 168 326-494 3-233 (268)
218 PRK15093 antimicrobial peptide 99.9 1.3E-24 2.9E-29 230.5 17.3 167 326-494 3-240 (330)
219 cd03299 ABC_ModC_like Archeal 99.9 1.3E-24 2.9E-29 219.8 16.4 166 327-494 1-211 (235)
220 cd03248 ABCC_TAP TAP, the Tran 99.9 9.5E-25 2.1E-29 219.3 15.1 163 325-490 10-225 (226)
221 PRK14255 phosphate ABC transpo 99.9 1.9E-24 4.1E-29 220.7 17.5 168 324-494 3-228 (252)
222 PRK13642 cbiO cobalt transport 99.9 1.8E-24 3.9E-29 224.2 17.5 167 326-494 4-221 (277)
223 PRK13549 xylose transporter AT 99.9 1.1E-24 2.3E-29 244.3 17.0 167 326-494 259-486 (506)
224 cd03223 ABCD_peroxisomal_ALDP 99.9 1.5E-24 3.2E-29 208.1 15.5 149 327-489 1-163 (166)
225 COG4604 CeuD ABC-type enteroch 99.9 4.8E-25 1E-29 209.8 11.9 166 327-494 2-217 (252)
226 cd03244 ABCC_MRP_domain2 Domai 99.9 1.7E-24 3.7E-29 216.7 16.3 166 326-494 2-218 (221)
227 PRK14241 phosphate transporter 99.9 1.9E-24 4.1E-29 221.7 17.0 166 326-494 4-234 (258)
228 PRK14270 phosphate ABC transpo 99.9 2.4E-24 5.2E-29 219.9 17.7 166 326-494 4-227 (251)
229 PRK14272 phosphate ABC transpo 99.9 2.4E-24 5.3E-29 219.9 17.6 166 326-494 4-228 (252)
230 PRK14251 phosphate ABC transpo 99.9 2.4E-24 5.3E-29 219.8 17.4 166 326-494 4-227 (251)
231 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.5E-24 3.2E-29 219.6 15.6 165 327-494 1-218 (238)
232 TIGR02633 xylG D-xylose ABC tr 99.9 1.1E-24 2.4E-29 243.8 16.1 166 327-494 2-222 (500)
233 TIGR01189 ccmA heme ABC export 99.9 1E-24 2.2E-29 214.9 13.8 147 327-475 1-188 (198)
234 PRK13545 tagH teichoic acids e 99.9 1.6E-24 3.5E-29 237.7 16.8 165 326-494 21-224 (549)
235 PRK14254 phosphate ABC transpo 99.9 3E-24 6.6E-29 223.4 18.0 169 323-494 36-261 (285)
236 PRK14249 phosphate ABC transpo 99.9 2.4E-24 5.1E-29 220.0 16.7 166 326-494 4-227 (251)
237 cd03250 ABCC_MRP_domain1 Domai 99.9 2.5E-24 5.3E-29 213.0 16.3 160 327-489 1-203 (204)
238 PRK14253 phosphate ABC transpo 99.9 3.5E-24 7.6E-29 218.4 17.8 166 326-494 3-225 (249)
239 PRK14259 phosphate ABC transpo 99.9 3.4E-24 7.3E-29 221.3 17.8 162 324-488 11-228 (269)
240 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.7E-25 1.7E-29 205.1 11.8 140 327-490 1-144 (144)
241 CHL00131 ycf16 sulfate ABC tra 99.9 3.3E-24 7.2E-29 218.9 17.4 167 326-494 7-233 (252)
242 PRK15064 ABC transporter ATP-b 99.9 1.5E-24 3.2E-29 244.4 16.3 161 327-492 2-231 (530)
243 cd03253 ABCC_ATM1_transporter 99.9 2.2E-24 4.7E-29 218.0 15.8 165 327-494 1-216 (236)
244 PRK11288 araG L-arabinose tran 99.9 1.7E-24 3.6E-29 242.4 16.4 167 326-494 4-221 (501)
245 PRK14244 phosphate ABC transpo 99.9 3.4E-24 7.3E-29 218.8 17.2 164 328-494 7-229 (251)
246 PRK13541 cytochrome c biogenes 99.9 1.5E-24 3.3E-29 213.2 14.0 154 327-482 2-191 (195)
247 PRK11147 ABC transporter ATPas 99.9 1.4E-24 3E-29 249.3 15.9 165 326-497 3-237 (635)
248 TIGR01184 ntrCD nitrate transp 99.9 2E-24 4.4E-29 217.8 15.1 152 342-494 3-196 (230)
249 PRK14238 phosphate transporter 99.9 3.9E-24 8.5E-29 221.0 17.6 169 323-494 21-247 (271)
250 PRK10982 galactose/methyl gala 99.9 1.7E-24 3.7E-29 241.8 15.5 164 329-494 1-215 (491)
251 PRK10938 putative molybdenum t 99.9 1.7E-24 3.8E-29 241.7 15.5 169 325-495 259-485 (490)
252 PRK15064 ABC transporter ATP-b 99.9 2.1E-24 4.5E-29 243.2 16.1 165 324-493 317-515 (530)
253 PRK14265 phosphate ABC transpo 99.9 5.4E-24 1.2E-28 220.3 17.8 167 325-494 19-250 (274)
254 COG4586 ABC-type uncharacteriz 99.9 1.4E-24 3E-29 216.0 12.6 145 342-495 42-239 (325)
255 cd03222 ABC_RNaseL_inhibitor T 99.9 1.2E-24 2.7E-29 210.4 12.0 143 330-491 4-150 (177)
256 PRK14258 phosphate ABC transpo 99.9 4.9E-24 1.1E-28 219.0 17.2 168 325-494 6-237 (261)
257 COG4559 ABC-type hemin transpo 99.9 2.5E-24 5.5E-29 207.1 13.9 166 327-494 2-222 (259)
258 PRK03695 vitamin B12-transport 99.9 3.1E-24 6.6E-29 219.0 15.4 162 328-494 2-214 (248)
259 PRK09473 oppD oligopeptide tra 99.9 3.9E-24 8.5E-29 226.8 16.6 168 325-494 11-243 (330)
260 PRK14236 phosphate transporter 99.9 6E-24 1.3E-28 219.8 17.6 167 325-494 24-248 (272)
261 PRK13546 teichoic acids export 99.9 4.9E-24 1.1E-28 219.4 16.8 151 342-494 42-224 (264)
262 PRK15134 microcin C ABC transp 99.9 2.7E-24 5.9E-29 242.3 16.3 168 325-494 4-238 (529)
263 cd03234 ABCG_White The White s 99.9 3.9E-24 8.4E-29 215.0 15.6 166 326-493 3-224 (226)
264 PRK14261 phosphate ABC transpo 99.9 5.5E-24 1.2E-28 217.5 17.0 166 326-494 6-229 (253)
265 PRK09700 D-allose transporter 99.9 4E-24 8.6E-29 239.9 17.3 166 326-494 265-490 (510)
266 cd03289 ABCC_CFTR2 The CFTR su 99.9 5.5E-24 1.2E-28 220.0 16.9 165 326-494 2-217 (275)
267 cd03233 ABC_PDR_domain1 The pl 99.9 7.4E-24 1.6E-28 209.6 17.1 164 326-493 3-200 (202)
268 TIGR02324 CP_lyasePhnL phospho 99.9 4.3E-24 9.3E-29 214.3 15.6 158 327-486 2-222 (224)
269 TIGR02633 xylG D-xylose ABC tr 99.9 3.5E-24 7.6E-29 239.8 16.3 167 326-494 257-484 (500)
270 PRK11819 putative ABC transpor 99.9 5.5E-24 1.2E-28 241.0 17.5 162 326-493 6-240 (556)
271 PRK14260 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 216.2 17.7 167 325-494 6-235 (259)
272 cd03288 ABCC_SUR2 The SUR doma 99.9 8.8E-24 1.9E-28 216.7 17.0 168 324-494 17-235 (257)
273 cd03369 ABCC_NFT1 Domain 2 of 99.9 1E-23 2.2E-28 209.1 16.8 163 325-494 5-204 (207)
274 PRK14243 phosphate transporter 99.9 1.2E-23 2.7E-28 216.4 17.7 166 326-494 10-240 (264)
275 PRK14246 phosphate ABC transpo 99.9 1.2E-23 2.5E-28 215.8 17.4 166 326-494 10-233 (257)
276 PRK15134 microcin C ABC transp 99.9 8E-24 1.7E-28 238.4 17.4 167 326-494 275-507 (529)
277 PRK10261 glutathione transport 99.9 8.1E-24 1.7E-28 242.4 17.7 168 325-494 312-545 (623)
278 PRK14266 phosphate ABC transpo 99.9 1.8E-23 3.8E-28 213.4 17.9 166 326-494 3-226 (250)
279 PRK14252 phosphate ABC transpo 99.9 1.6E-23 3.6E-28 215.6 17.8 167 325-494 15-241 (265)
280 PRK14264 phosphate ABC transpo 99.9 1.2E-23 2.6E-28 221.0 17.1 169 323-494 42-281 (305)
281 TIGR01166 cbiO cobalt transpor 99.9 4.5E-24 9.8E-29 208.8 13.0 133 342-476 10-189 (190)
282 COG1129 MglA ABC-type sugar tr 99.9 1.2E-23 2.6E-28 228.6 17.5 159 326-494 8-226 (500)
283 COG1119 ModF ABC-type molybden 99.9 9.7E-24 2.1E-28 208.2 15.0 168 325-494 30-254 (257)
284 PRK10261 glutathione transport 99.9 6.6E-24 1.4E-28 243.1 16.0 168 325-494 11-250 (623)
285 cd03238 ABC_UvrA The excision 99.9 3E-24 6.6E-29 207.5 11.1 143 342-491 13-166 (176)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-23 2.4E-28 238.3 17.6 164 325-494 3-239 (552)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.4E-24 1.6E-28 239.8 16.0 164 325-493 321-521 (552)
288 PRK13409 putative ATPase RIL; 99.9 7E-24 1.5E-28 240.5 15.8 166 325-492 339-532 (590)
289 TIGR03269 met_CoM_red_A2 methy 99.9 1.1E-23 2.4E-28 236.9 17.1 167 326-494 279-509 (520)
290 PLN03073 ABC transporter F fam 99.9 1.1E-23 2.5E-28 243.1 16.9 165 324-493 506-704 (718)
291 PRK11819 putative ABC transpor 99.9 1.2E-23 2.7E-28 238.1 16.6 163 325-492 323-522 (556)
292 TIGR03415 ABC_choXWV_ATP choli 99.9 9.8E-24 2.1E-28 226.7 14.4 163 331-494 29-246 (382)
293 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.9E-23 4E-28 212.9 15.4 144 345-489 20-192 (246)
294 cd03290 ABCC_SUR1_N The SUR do 99.9 1.8E-23 3.8E-28 209.0 14.9 162 328-490 2-218 (218)
295 PRK15439 autoinducer 2 ABC tra 99.9 1.7E-23 3.7E-28 234.7 16.2 164 325-494 267-484 (510)
296 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.6E-23 3.4E-28 198.7 13.5 144 329-489 2-156 (157)
297 PRK11288 araG L-arabinose tran 99.9 2.6E-23 5.6E-28 232.8 17.3 164 326-494 257-477 (501)
298 TIGR02770 nickel_nikD nickel i 99.9 2.3E-23 4.9E-28 210.1 15.0 151 342-494 4-207 (230)
299 COG4181 Predicted ABC-type tra 99.9 2.1E-23 4.6E-28 194.4 13.4 167 326-493 6-226 (228)
300 PRK10982 galactose/methyl gala 99.9 2E-23 4.4E-28 233.1 15.7 165 326-493 250-471 (491)
301 PRK14263 phosphate ABC transpo 99.9 5.2E-23 1.1E-27 211.5 17.5 166 326-494 8-237 (261)
302 PRK14257 phosphate ABC transpo 99.9 5.7E-23 1.2E-27 217.7 17.9 167 325-494 79-305 (329)
303 COG4598 HisP ABC-type histidin 99.9 1.4E-23 3E-28 196.9 11.3 167 326-494 6-233 (256)
304 TIGR01257 rim_protein retinal- 99.9 3.3E-23 7.1E-28 256.2 17.5 170 324-495 1935-2152(2272)
305 cd03291 ABCC_CFTR1 The CFTR su 99.9 9.1E-23 2E-27 211.7 17.9 169 323-494 36-239 (282)
306 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.7E-23 8.1E-28 211.7 14.8 154 330-487 4-213 (255)
307 PRK10762 D-ribose transporter 99.9 5E-23 1.1E-27 230.5 16.9 163 326-494 257-476 (501)
308 PLN03073 ABC transporter F fam 99.9 4.2E-23 9.2E-28 238.3 16.4 168 325-497 176-425 (718)
309 COG0444 DppD ABC-type dipeptid 99.9 3.3E-23 7.2E-28 212.5 13.7 166 327-494 2-235 (316)
310 COG1123 ATPase components of v 99.9 4.9E-23 1.1E-27 225.3 15.1 168 326-494 5-236 (539)
311 COG2274 SunT ABC-type bacterio 99.9 3.7E-23 8.1E-28 236.7 14.7 169 324-495 469-689 (709)
312 PRK15177 Vi polysaccharide exp 99.9 1E-22 2.3E-27 203.1 15.0 149 342-495 5-185 (213)
313 COG4161 ArtP ABC-type arginine 99.9 1.3E-22 2.7E-27 187.5 14.0 167 327-495 3-223 (242)
314 TIGR03771 anch_rpt_ABC anchore 99.9 8.6E-23 1.9E-27 205.0 14.1 147 345-494 1-193 (223)
315 COG3845 ABC-type uncharacteriz 99.9 1.4E-22 3E-27 216.5 15.7 158 326-493 4-220 (501)
316 TIGR01257 rim_protein retinal- 99.9 1.1E-22 2.5E-27 251.5 16.9 168 324-494 926-1141(2272)
317 KOG0927 Predicted transporter 99.9 3.4E-23 7.4E-28 222.0 10.5 167 324-498 387-591 (614)
318 COG4525 TauB ABC-type taurine 99.9 1E-22 2.3E-27 193.6 12.5 161 327-489 4-209 (259)
319 PRK10522 multidrug transporter 99.9 2.1E-22 4.6E-27 227.8 17.2 168 325-494 321-530 (547)
320 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.6E-22 5.6E-27 227.4 17.3 169 325-494 336-551 (555)
321 COG4175 ProV ABC-type proline/ 99.9 1.8E-22 3.9E-27 204.5 14.1 151 342-494 46-246 (386)
322 COG1123 ATPase components of v 99.9 2.4E-22 5.1E-27 220.0 15.9 172 323-495 277-512 (539)
323 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.6E-22 7.8E-27 231.7 16.9 165 325-494 450-665 (686)
324 TIGR01842 type_I_sec_PrtD type 99.9 4.3E-22 9.2E-27 225.2 17.1 168 325-494 315-534 (544)
325 cd03227 ABC_Class2 ABC-type Cl 99.9 1.6E-22 3.5E-27 193.2 11.5 128 341-487 12-154 (162)
326 PRK13409 putative ATPase RIL; 99.9 3.2E-22 6.8E-27 227.1 15.9 153 331-488 78-286 (590)
327 KOG0057 Mitochondrial Fe/S clu 99.9 4.9E-22 1.1E-26 213.9 16.4 166 325-494 350-566 (591)
328 COG4987 CydC ABC-type transpor 99.9 3.2E-22 6.9E-27 215.2 14.9 159 326-495 336-554 (573)
329 COG1134 TagH ABC-type polysacc 99.9 3.4E-22 7.4E-27 197.5 13.4 144 342-495 45-229 (249)
330 PRK11160 cysteine/glutathione 99.9 6.7E-22 1.4E-26 224.9 17.4 167 325-494 337-554 (574)
331 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4E-22 8.7E-27 232.2 15.6 165 325-494 476-692 (710)
332 TIGR02203 MsbA_lipidA lipid A 99.9 6.5E-22 1.4E-26 224.9 16.8 166 325-493 329-547 (571)
333 COG4107 PhnK ABC-type phosphon 99.9 6.5E-22 1.4E-26 184.8 13.7 159 326-494 6-233 (258)
334 COG0396 sufC Cysteine desulfur 99.9 1.6E-21 3.5E-26 190.4 17.0 168 326-495 3-227 (251)
335 PRK13657 cyclic beta-1,2-gluca 99.9 7.5E-22 1.6E-26 225.2 17.1 167 325-494 333-550 (588)
336 PRK11176 lipid transporter ATP 99.9 6.4E-22 1.4E-26 225.5 16.4 167 325-494 340-559 (582)
337 TIGR03375 type_I_sec_LssB type 99.9 8E-22 1.7E-26 229.1 17.1 167 325-494 462-680 (694)
338 PLN03211 ABC transporter G-25; 99.9 4.5E-22 9.8E-27 228.4 14.7 166 328-495 70-289 (659)
339 COG4619 ABC-type uncharacteriz 99.9 2.7E-22 5.8E-27 186.6 9.9 149 342-491 21-212 (223)
340 TIGR01192 chvA glucan exporter 99.9 1E-21 2.2E-26 223.8 16.8 167 325-494 333-550 (585)
341 PRK11174 cysteine/glutathione 99.9 1E-21 2.2E-26 224.2 16.5 166 325-494 348-564 (588)
342 KOG0062 ATPase component of AB 99.9 2E-22 4.4E-27 215.0 9.6 169 325-503 79-285 (582)
343 TIGR01193 bacteriocin_ABC ABC- 99.9 1.3E-21 2.9E-26 227.8 17.4 166 325-494 472-689 (708)
344 COG4988 CydD ABC-type transpor 99.9 1.6E-21 3.5E-26 212.8 16.2 166 326-494 320-535 (559)
345 PRK10790 putative multidrug tr 99.9 1.4E-21 3.1E-26 223.1 16.5 166 325-494 339-555 (592)
346 PRK10535 macrolide transporter 99.9 2.2E-21 4.8E-26 223.2 17.8 168 326-495 4-225 (648)
347 COG4133 CcmA ABC-type transpor 99.9 1.2E-21 2.6E-26 185.8 12.8 137 328-474 4-190 (209)
348 cd03270 ABC_UvrA_I The excisio 99.9 1.9E-21 4E-26 195.8 14.9 151 342-494 13-225 (226)
349 TIGR00958 3a01208 Conjugate Tr 99.9 1.8E-21 4E-26 226.4 17.0 165 325-494 477-694 (711)
350 PRK10789 putative multidrug tr 99.9 2.2E-21 4.7E-26 220.5 17.0 167 325-494 312-530 (569)
351 COG4608 AppF ABC-type oligopep 99.9 1.5E-21 3.3E-26 196.4 13.7 159 326-494 4-191 (268)
352 TIGR02204 MsbA_rel ABC transpo 99.9 2.2E-21 4.8E-26 220.8 15.9 167 325-494 336-555 (576)
353 COG1101 PhnK ABC-type uncharac 99.9 2.9E-21 6.3E-26 186.5 14.1 145 342-495 24-231 (263)
354 TIGR00954 3a01203 Peroxysomal 99.9 2.7E-21 5.8E-26 222.8 16.0 158 325-487 450-652 (659)
355 COG4674 Uncharacterized ABC-ty 99.9 1.1E-21 2.3E-26 186.8 10.3 167 325-494 4-227 (249)
356 TIGR01846 type_I_sec_HlyB type 99.9 3.4E-21 7.3E-26 223.9 16.9 167 325-494 454-672 (694)
357 KOG0927 Predicted transporter 99.9 2.4E-20 5.3E-25 200.2 20.1 161 327-500 76-306 (614)
358 TIGR02857 CydD thiol reductant 99.9 4.2E-21 9.2E-26 216.4 15.1 158 325-485 319-528 (529)
359 COG4148 ModC ABC-type molybdat 99.9 1.4E-21 3.1E-26 195.0 9.7 162 331-494 5-210 (352)
360 TIGR01187 potA spermidine/putr 99.8 8.3E-21 1.8E-25 201.1 14.6 139 356-494 1-182 (325)
361 TIGR02868 CydC thiol reductant 99.8 1.8E-20 3.8E-25 211.4 14.9 147 325-474 333-529 (529)
362 TIGR00956 3a01205 Pleiotropic 99.8 3.5E-20 7.5E-25 228.1 17.4 170 324-495 757-986 (1394)
363 COG1132 MdlB ABC-type multidru 99.8 3.1E-20 6.7E-25 211.1 15.2 165 325-494 327-544 (567)
364 COG4136 ABC-type uncharacteriz 99.8 2.2E-20 4.7E-25 170.9 11.0 151 326-478 2-199 (213)
365 PTZ00265 multidrug resistance 99.8 4.5E-20 9.7E-25 227.5 16.7 163 326-490 382-656 (1466)
366 cd03278 ABC_SMC_barmotin Barmo 99.8 4.3E-20 9.3E-25 182.1 11.8 139 342-487 15-189 (197)
367 PTZ00265 multidrug resistance 99.8 9.7E-20 2.1E-24 224.6 16.4 166 325-492 1164-1441(1466)
368 KOG0055 Multidrug/pheromone ex 99.8 9E-20 1.9E-24 213.0 14.8 161 323-494 347-568 (1228)
369 TIGR00955 3a01204 The Eye Pigm 99.8 1E-19 2.2E-24 208.5 14.8 152 342-495 43-249 (617)
370 PLN03140 ABC transporter G fam 99.8 2E-19 4.3E-24 221.1 17.8 168 326-495 867-1103(1470)
371 KOG0059 Lipid exporter ABCA1 a 99.8 8.8E-20 1.9E-24 216.0 14.1 168 325-494 563-779 (885)
372 COG4778 PhnL ABC-type phosphon 99.8 8.5E-20 1.8E-24 170.2 10.9 152 326-487 4-226 (235)
373 KOG0066 eIF2-interacting prote 99.8 5E-20 1.1E-24 192.3 10.0 155 325-492 585-780 (807)
374 COG4618 ArpD ABC-type protease 99.8 2.1E-19 4.5E-24 192.1 14.8 169 324-494 332-552 (580)
375 KOG0058 Peptide exporter, ABC 99.8 1.2E-19 2.5E-24 201.8 13.2 160 324-494 463-683 (716)
376 PLN03232 ABC transporter C fam 99.8 2.9E-19 6.4E-24 221.8 17.5 166 325-494 1233-1450(1495)
377 COG4172 ABC-type uncharacteriz 99.8 1.9E-19 4.2E-24 187.3 13.0 168 325-494 5-239 (534)
378 PLN03130 ABC transporter C fam 99.8 3.4E-19 7.4E-24 221.7 17.4 166 325-494 1236-1453(1622)
379 COG4172 ABC-type uncharacteriz 99.8 4.9E-19 1.1E-23 184.4 14.6 171 323-495 273-509 (534)
380 cd03271 ABC_UvrA_II The excisi 99.8 8.4E-19 1.8E-23 179.5 16.2 95 399-494 153-258 (261)
381 cd03279 ABC_sbcCD SbcCD and ot 99.8 5.6E-19 1.2E-23 176.2 14.3 161 326-490 5-210 (213)
382 PLN03130 ABC transporter C fam 99.8 4.3E-19 9.4E-24 220.8 16.6 168 325-494 613-820 (1622)
383 PLN03232 ABC transporter C fam 99.8 6E-19 1.3E-23 219.1 17.8 168 325-494 613-820 (1495)
384 PTZ00243 ABC transporter; Prov 99.8 7.1E-19 1.5E-23 218.5 17.5 167 324-494 1306-1525(1560)
385 TIGR00957 MRP_assoc_pro multi 99.8 5.4E-19 1.2E-23 219.8 16.4 168 326-494 636-842 (1522)
386 TIGR01271 CFTR_protein cystic 99.8 1E-18 2.2E-23 216.9 17.6 166 325-494 1216-1432(1490)
387 TIGR00957 MRP_assoc_pro multi 99.8 1.1E-18 2.4E-23 217.1 17.5 166 325-494 1283-1500(1522)
388 TIGR01271 CFTR_protein cystic 99.8 1.1E-18 2.3E-23 216.6 15.5 165 326-494 428-628 (1490)
389 PTZ00243 ABC transporter; Prov 99.8 1.4E-18 3E-23 216.0 15.3 158 335-494 669-862 (1560)
390 KOG0062 ATPase component of AB 99.8 2.3E-18 5E-23 184.2 12.5 160 325-497 361-563 (582)
391 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2E-18 4.4E-23 172.1 11.4 150 327-486 6-202 (212)
392 cd03272 ABC_SMC3_euk Eukaryoti 99.8 5.1E-18 1.1E-22 172.3 13.7 77 408-486 152-233 (243)
393 COG4615 PvdE ABC-type sideroph 99.8 3.8E-18 8.2E-23 177.2 12.5 159 326-493 322-528 (546)
394 PLN03140 ABC transporter G fam 99.8 2.4E-18 5.2E-23 211.6 11.8 152 342-495 183-420 (1470)
395 cd03240 ABC_Rad50 The catalyti 99.7 4.5E-18 9.8E-23 168.6 10.7 143 343-488 16-197 (204)
396 COG4138 BtuD ABC-type cobalami 99.7 2E-18 4.3E-23 161.8 6.8 151 342-494 17-213 (248)
397 COG4167 SapF ABC-type antimicr 99.7 1.4E-17 2.9E-22 157.2 11.5 168 327-495 5-232 (267)
398 KOG0061 Transporter, ABC super 99.7 2E-17 4.3E-22 188.5 14.4 152 342-495 48-253 (613)
399 TIGR00956 3a01205 Pleiotropic 99.7 1.6E-17 3.4E-22 204.9 13.9 152 342-495 79-293 (1394)
400 cd03275 ABC_SMC1_euk Eukaryoti 99.7 4.1E-17 9E-22 166.4 14.1 77 410-487 151-232 (247)
401 cd03273 ABC_SMC2_euk Eukaryoti 99.7 4.5E-17 9.8E-22 166.5 13.7 79 406-486 158-241 (251)
402 KOG0055 Multidrug/pheromone ex 99.7 3.4E-17 7.4E-22 191.7 13.5 167 324-494 985-1205(1228)
403 KOG0056 Heavy metal exporter H 99.7 3.8E-17 8.2E-22 173.2 12.5 168 323-494 534-753 (790)
404 COG1245 Predicted ATPase, RNas 99.7 7.5E-17 1.6E-21 170.3 12.6 153 326-487 342-530 (591)
405 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.2E-16 2.7E-21 157.6 12.9 144 342-487 14-189 (198)
406 PF00005 ABC_tran: ABC transpo 99.7 5.8E-17 1.3E-21 149.6 6.6 100 342-442 3-137 (137)
407 TIGR00630 uvra excinuclease AB 99.7 1.2E-15 2.5E-20 179.5 17.8 95 399-494 812-917 (924)
408 PRK00349 uvrA excinuclease ABC 99.7 1.4E-15 3E-20 179.2 17.1 95 399-494 814-919 (943)
409 KOG0066 eIF2-interacting prote 99.6 5.8E-16 1.3E-20 162.2 11.3 166 327-497 265-493 (807)
410 PRK00635 excinuclease ABC subu 99.6 3.4E-15 7.5E-20 183.0 16.6 96 398-494 792-898 (1809)
411 COG1245 Predicted ATPase, RNas 99.6 2.5E-15 5.4E-20 158.9 13.3 125 348-482 98-282 (591)
412 KOG2355 Predicted ABC-type tra 99.6 1.9E-15 4E-20 145.3 11.1 168 323-494 10-229 (291)
413 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.7E-15 3.6E-20 151.2 9.7 81 408-489 120-210 (213)
414 cd03239 ABC_SMC_head The struc 99.6 6.3E-15 1.4E-19 143.0 13.0 73 415-488 95-172 (178)
415 KOG0054 Multidrug resistance-a 99.6 6.6E-15 1.4E-19 176.3 15.2 170 323-494 515-723 (1381)
416 COG4178 ABC-type uncharacteriz 99.6 8.7E-15 1.9E-19 162.7 14.1 160 324-486 390-586 (604)
417 KOG0054 Multidrug resistance-a 99.6 1.2E-14 2.5E-19 174.2 15.7 168 324-494 1136-1354(1381)
418 KOG0065 Pleiotropic drug resis 99.5 8E-15 1.7E-19 172.0 9.1 183 325-509 786-1034(1391)
419 COG5265 ATM1 ABC-type transpor 99.5 3.3E-14 7.1E-19 149.6 11.6 167 324-494 260-478 (497)
420 COG2401 ABC-type ATPase fused 99.5 4.6E-14 1E-18 147.8 10.5 147 342-490 401-586 (593)
421 COG1129 MglA ABC-type sugar tr 99.5 1.7E-13 3.7E-18 149.7 14.5 151 341-493 276-481 (500)
422 KOG0064 Peroxisomal long-chain 99.5 6E-13 1.3E-17 142.9 17.5 156 326-486 481-681 (728)
423 KOG0060 Long-chain acyl-CoA tr 99.5 3.7E-13 8.1E-18 146.3 12.5 158 325-487 432-640 (659)
424 cd03241 ABC_RecN RecN ATPase i 99.5 4.6E-13 9.9E-18 138.9 12.7 75 413-489 169-248 (276)
425 PF05192 MutS_III: MutS domain 99.4 9.7E-13 2.1E-17 129.3 11.8 169 1-266 33-204 (204)
426 COG0178 UvrA Excinuclease ATPa 99.4 3E-12 6.5E-17 144.0 13.8 79 407-486 815-897 (935)
427 PRK00635 excinuclease ABC subu 99.4 3E-12 6.4E-17 157.6 15.1 89 399-488 1683-1776(1809)
428 COG4170 SapD ABC-type antimicr 99.4 1.7E-12 3.7E-17 125.3 9.2 147 342-490 25-236 (330)
429 cd03242 ABC_RecF RecF is a rec 99.2 3.1E-11 6.7E-16 124.9 9.1 76 411-491 180-269 (270)
430 KOG0063 RNAse L inhibitor, ABC 99.2 4.2E-11 9.2E-16 126.2 9.6 138 342-488 354-532 (592)
431 PF02463 SMC_N: RecF/RecN/SMC 99.2 2.1E-10 4.6E-15 114.7 13.0 71 414-486 136-211 (220)
432 TIGR00630 uvra excinuclease AB 99.2 7.9E-11 1.7E-15 139.1 10.7 95 399-494 471-575 (924)
433 COG3845 ABC-type uncharacteriz 99.1 3.8E-10 8.3E-15 121.7 13.5 169 323-493 254-483 (501)
434 PRK00349 uvrA excinuclease ABC 99.1 1.1E-10 2.4E-15 138.1 10.2 95 399-494 473-577 (943)
435 COG3910 Predicted ATPase [Gene 99.1 6.3E-10 1.4E-14 106.2 10.7 69 410-479 125-193 (233)
436 PRK13695 putative NTPase; Prov 99.1 3.3E-10 7.1E-15 109.4 8.3 131 353-491 2-153 (174)
437 TIGR02858 spore_III_AA stage I 99.0 2.3E-09 4.9E-14 110.6 11.2 112 352-479 112-234 (270)
438 PRK08533 flagellar accessory p 98.9 9.9E-09 2.1E-13 103.8 10.8 135 328-475 9-163 (230)
439 cd01124 KaiC KaiC is a circadi 98.9 8.6E-09 1.9E-13 99.9 9.8 119 354-475 2-141 (187)
440 PF13304 AAA_21: AAA domain; P 98.8 7.2E-09 1.6E-13 103.0 7.8 65 411-476 233-301 (303)
441 TIGR00634 recN DNA repair prot 98.8 3.7E-08 7.9E-13 112.3 11.6 115 413-535 439-561 (563)
442 KOG0063 RNAse L inhibitor, ABC 98.7 3.7E-08 8E-13 104.4 9.2 79 400-479 199-278 (592)
443 KOG0065 Pleiotropic drug resis 98.7 3.9E-08 8.5E-13 116.7 10.1 152 342-495 133-344 (1391)
444 PRK10869 recombination and rep 98.7 1E-07 2.2E-12 108.1 11.8 114 414-535 430-551 (553)
445 TIGR00618 sbcc exonuclease Sbc 98.7 4.1E-08 8.9E-13 119.5 9.0 83 405-488 941-1035(1042)
446 PRK07721 fliI flagellum-specif 98.7 2.6E-07 5.7E-12 101.4 14.3 141 342-495 151-336 (438)
447 cd01120 RecA-like_NTPases RecA 98.7 9.4E-08 2E-12 89.4 9.2 121 353-475 1-138 (165)
448 PRK06067 flagellar accessory p 98.6 4E-07 8.6E-12 92.1 11.5 125 347-475 22-166 (234)
449 PRK03918 chromosome segregatio 98.6 1.3E-07 2.8E-12 113.4 9.0 78 409-487 783-867 (880)
450 PHA02562 46 endonuclease subun 98.6 1.2E-07 2.7E-12 107.9 8.0 87 396-488 453-551 (562)
451 PRK01156 chromosome segregatio 98.5 3E-07 6.6E-12 110.5 9.5 79 409-487 796-883 (895)
452 PRK06793 fliI flagellum-specif 98.5 1.8E-07 4E-12 102.0 6.6 149 329-492 133-301 (432)
453 TIGR02788 VirB11 P-type DNA tr 98.4 1.5E-07 3.3E-12 99.3 4.6 129 343-491 137-270 (308)
454 PTZ00132 GTP-binding nuclear p 98.4 2E-07 4.3E-12 92.8 4.9 49 412-461 148-204 (215)
455 cd01131 PilT Pilus retraction 98.4 3.6E-07 7.8E-12 90.3 6.4 117 353-485 3-120 (198)
456 smart00382 AAA ATPases associa 98.4 2.3E-06 4.9E-11 76.9 11.1 116 352-473 3-125 (148)
457 PRK10246 exonuclease subunit S 98.4 5.9E-07 1.3E-11 109.2 8.8 69 408-477 943-1020(1047)
458 cd01128 rho_factor Transcripti 98.4 6.2E-07 1.3E-11 91.6 7.0 73 414-491 129-211 (249)
459 TIGR02168 SMC_prok_B chromosom 98.3 7.7E-07 1.7E-11 109.5 7.8 77 408-486 1083-1164(1179)
460 TIGR00606 rad50 rad50. This fa 98.3 2.2E-06 4.8E-11 106.7 10.1 74 407-480 1192-1277(1311)
461 COG0419 SbcC ATPase involved i 98.2 2.9E-06 6.2E-11 102.1 8.5 79 409-488 810-897 (908)
462 TIGR02169 SMC_prok_A chromosom 98.1 4.9E-06 1.1E-10 102.5 7.4 77 409-487 1069-1150(1164)
463 COG0178 UvrA Excinuclease ATPa 98.1 1.3E-05 2.8E-10 91.5 9.7 95 399-494 465-569 (935)
464 PRK02224 chromosome segregatio 98.0 8.5E-06 1.8E-10 97.9 7.8 77 410-487 777-867 (880)
465 PF05190 MutS_IV: MutS family 98.0 6.7E-05 1.5E-09 64.2 11.2 88 130-222 1-89 (92)
466 PRK13830 conjugal transfer pro 98.0 1.1E-05 2.4E-10 95.8 8.1 63 428-491 649-722 (818)
467 COG4637 Predicted ATPase [Gene 98.0 6.5E-05 1.4E-09 77.6 11.9 66 414-481 270-338 (373)
468 cd01125 repA Hexameric Replica 98.0 1.3E-05 2.9E-10 81.4 6.5 46 429-475 109-160 (239)
469 TIGR01420 pilT_fam pilus retra 98.0 1.3E-05 2.7E-10 86.0 6.7 49 426-482 190-238 (343)
470 cd00009 AAA The AAA+ (ATPases 98.0 2.7E-05 5.9E-10 70.6 8.0 107 349-475 18-131 (151)
471 PRK09183 transposase/IS protei 97.9 2.4E-05 5.1E-10 80.6 8.3 111 342-474 95-206 (259)
472 TIGR02903 spore_lon_C ATP-depe 97.9 0.00014 3E-09 83.8 14.6 23 352-374 176-199 (615)
473 cd02023 UMPK Uridine monophosp 97.9 4.6E-06 1E-10 82.0 2.1 92 353-446 1-113 (198)
474 PRK06995 flhF flagellar biosyn 97.9 4.4E-05 9.6E-10 84.7 9.9 55 342-398 248-305 (484)
475 PRK00064 recF recombination pr 97.9 2.5E-05 5.5E-10 84.3 7.5 79 409-491 268-359 (361)
476 cd00820 PEPCK_HprK Phosphoenol 97.9 1E-05 2.2E-10 71.8 3.6 29 342-371 7-35 (107)
477 TIGR00767 rho transcription te 97.9 0.0004 8.8E-09 75.1 16.3 46 325-371 129-188 (415)
478 cd01130 VirB11-like_ATPase Typ 97.9 1.2E-05 2.6E-10 78.5 4.3 29 342-371 17-45 (186)
479 TIGR03881 KaiC_arch_4 KaiC dom 97.8 0.0002 4.4E-09 72.0 12.3 125 347-474 17-166 (229)
480 PRK14721 flhF flagellar biosyn 97.8 0.00024 5.2E-09 77.8 13.5 90 348-448 189-284 (420)
481 PF13555 AAA_29: P-loop contai 97.7 2.7E-05 5.9E-10 62.0 3.4 28 343-371 15-43 (62)
482 TIGR01026 fliI_yscN ATPase Fli 97.7 0.00035 7.5E-09 77.1 12.9 143 341-495 154-341 (440)
483 TIGR00416 sms DNA repair prote 97.7 0.00026 5.7E-09 78.6 11.9 136 347-488 91-245 (454)
484 PRK04296 thymidine kinase; Pro 97.7 0.00015 3.3E-09 71.1 8.8 125 350-488 2-141 (190)
485 TIGR02655 circ_KaiC circadian 97.7 3.6E-05 7.7E-10 86.3 4.6 124 347-475 18-168 (484)
486 TIGR00611 recf recF protein. A 97.6 5.9E-05 1.3E-09 81.5 5.7 59 413-475 274-342 (365)
487 TIGR00152 dephospho-CoA kinase 97.6 6.9E-05 1.5E-09 73.2 5.7 119 353-486 1-130 (188)
488 cd01121 Sms Sms (bacterial rad 97.6 0.00045 9.7E-09 74.8 12.4 134 347-487 79-232 (372)
489 PRK14722 flhF flagellar biosyn 97.6 0.00038 8.2E-09 75.1 11.5 102 342-452 129-237 (374)
490 COG1195 RecF Recombinational D 97.6 0.00012 2.7E-09 78.0 6.6 60 413-477 274-344 (363)
491 PRK14723 flhF flagellar biosyn 97.6 0.00076 1.7E-08 78.5 13.6 103 342-453 177-286 (767)
492 TIGR03015 pepcterm_ATPase puta 97.6 0.00023 4.9E-09 73.2 8.4 30 342-371 34-63 (269)
493 PRK06526 transposase; Provisio 97.6 0.00034 7.3E-09 71.9 9.6 105 348-474 96-201 (254)
494 PRK06731 flhF flagellar biosyn 97.6 0.0023 4.9E-08 66.3 15.6 100 349-454 74-178 (270)
495 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00026 5.6E-09 71.3 8.4 127 347-474 16-170 (235)
496 PLN03210 Resistant to P. syrin 97.5 0.00025 5.4E-09 87.7 9.6 27 344-371 201-227 (1153)
497 PTZ00454 26S protease regulato 97.5 0.0003 6.4E-09 76.9 9.0 103 348-475 177-295 (398)
498 PRK09862 putative ATP-dependen 97.5 0.00013 2.8E-09 81.7 6.2 113 330-455 188-317 (506)
499 PRK06893 DNA replication initi 97.5 0.00033 7.1E-09 70.8 8.6 94 352-474 40-134 (229)
500 TIGR03238 dnd_assoc_3 dnd syst 97.5 6.9E-05 1.5E-09 82.3 3.8 32 342-375 24-55 (504)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=3.5e-83 Score=739.49 Aligned_cols=537 Identities=39% Similarity=0.559 Sum_probs=483.5
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~ 79 (620)
||++++++ +.|..++++|+++|++|+++..++. .+.+||.+++|+++++.++..|.+++|.||++|+++|..+..++
T Consensus 26 ~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~ 103 (782)
T PRK00409 26 LGKEKVLQ--LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK 103 (782)
T ss_pred HHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999 9999999999999999999998886 78899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007057 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (620)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (620)
+++..... ...++.|..++..+.+++++.+.|.+|||+++ .|+|+||++|+.||+.+++.++++++.+.+....
T Consensus 104 ~~l~~~~~-----~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~ 177 (782)
T PRK00409 104 RFIEDLEE-----EEELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRS 177 (782)
T ss_pred HHHHhccc-----ccchhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99975200 01256788899999999999999999999885 8999999999999999998888888887775443
Q ss_pred HHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 007057 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (620)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~il~~L~~ 239 (620)
......+++.++++|++||||||++++++.+| |++|+.|++|+|+|++|..++++||++.++..++.+++.+|+++|+.
T Consensus 178 ~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~ 256 (782)
T PRK00409 178 KSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSA 256 (782)
T ss_pred cccccccccceEEEECCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234577889999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCc
Q 007057 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (620)
Q Consensus 240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (620)
.|..+.+.|..+++.+++||+++|+|.||.+++||+|.|++++ .+.++++|||+|.. .
T Consensus 257 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~------~---------- 314 (782)
T PRK00409 257 KVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDG------E---------- 314 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceecc------C----------
Confidence 9999999999999999999999999999999999999998653 69999999999832 0
Q ss_pred CCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHH
Q 007057 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (620)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~ 399 (620)
.+||+|+.+..+.++++|||||||||||+||++|++++|+|+|+|||+...+.+++|++++
T Consensus 315 -------------------~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~ 375 (782)
T PRK00409 315 -------------------KVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF 375 (782)
T ss_pred -------------------ceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence 2679999998766899999999999999999999999999999999998657899999999
Q ss_pred HHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
+++|+.+++.+.+|+||+||+++..++..+++|+|+||||||+||||.++.+++.++++++.+.++++|++||+.++..+
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 99999999999999999999998888777799999999999999999999999999999998888999999999999888
Q ss_pred ccccceeeCceEEEecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHhHHHHHHHHHHHHHH
Q 007057 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (620)
Q Consensus 480 ~~~~~~~~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (620)
+.....+.++++.|+.+++.|+|++..|.++.|+|+.+|+++|+|++++++|++.+.. +..+++.++++|++++.
T Consensus 456 ~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~ 530 (782)
T PRK00409 456 MYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELER 530 (782)
T ss_pred HhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999999999999999999998863 34577888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007057 560 KLESQARTAASLHAEIMDLYREVYTFCIIISHA 592 (620)
Q Consensus 560 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (620)
+++++.++++....++++++++++++.+++++-
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777777777777776666655443
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=8e-81 Score=718.04 Aligned_cols=532 Identities=35% Similarity=0.485 Sum_probs=479.4
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE-ICAVRRTLRAVNNVW 79 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l~~~~~~l~~i~Di~~~l~r~~~g~~l~~~e-l~~i~~~l~~~~~l~ 79 (620)
+|++.+++ +.|.++.++|+++|++|++++.++. ++||.+++||++++.++..|.++++.| |+.|+.+|..+..++
T Consensus 26 ~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~--~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~ 101 (771)
T TIGR01069 26 LGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN--NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK 101 (771)
T ss_pred HHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc--cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH
Confidence 59999999 9999999999999999999998876 899999999999999999999999988 999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007057 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (620)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (620)
.++... ..++.|..++..+.++++|.+.|.+|||++| .|+|+|||+|+.||+++++++.++++.+.+....
T Consensus 102 ~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 102 VLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred HHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998642 1367888889889999999999999999885 8999999999999999998888888887775443
Q ss_pred HHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 007057 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (620)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~il~~L~~ 239 (620)
......+++.++|+|++||||||++++++.+| |++|+.|++|+|+|+||.+++++||++.++..++.+++.+|+++|+.
T Consensus 173 ~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~ 251 (771)
T TIGR01069 173 KELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSE 251 (771)
T ss_pred hchhhhhcCceEEEECCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234567889999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCc
Q 007057 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (620)
Q Consensus 240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (620)
.|.++.+.|..+++.+++||+++|+|.||..+++++|.+++.+ .+.++++|||++...
T Consensus 252 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~---------------- 309 (771)
T TIGR01069 252 KVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP---------------- 309 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC----------------
Confidence 9999999999999999999999999999999999999997643 699999999998310
Q ss_pred CCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHH
Q 007057 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (620)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~ 399 (620)
.+||+|+.+..+.++++|+||||||||||||++|++.+|+++|+++|+...+.+++|++++
T Consensus 310 -------------------~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 310 -------------------KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred -------------------ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 2579999998776899999999999999999999999999999999998667899999999
Q ss_pred HHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
.++|..+++...+|+||+||++++.++..+++|+|+||||||+||||.++.+++.++++++.+.|+++|++||+.++..+
T Consensus 371 ~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 99999999999999999999998888887899999999999999999999999999999999889999999999999888
Q ss_pred ccccceeeCceEEEecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHhHHHHHHHHHHHHHH
Q 007057 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (620)
Q Consensus 480 ~~~~~~~~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (620)
+.....+.+++|.|+.+++.|+|++..|.++.|+|+.+|+++|+|++++++|++++.. ...+++.++++|++++.
T Consensus 451 ~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 451 MYNNEGVENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEK 525 (771)
T ss_pred hcCCCCeEEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence 8777888999999999999999999999999999999999999999999999998863 34467778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007057 560 KLESQARTAASLHAEIMDLYREVYTFCIIISHA 592 (620)
Q Consensus 560 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (620)
+++++..+++....++++++++++++.+++++.
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666666666666666554443
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.3e-71 Score=646.70 Aligned_cols=485 Identities=23% Similarity=0.326 Sum_probs=436.4
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~--~l-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||+|++|+|+++|+.|+++|++||+.|+++.. .+ ...+.+|++++|++|++.|+..|. .+|+||..+++++..+..
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~-~~~~dl~~l~~~l~~~~~ 362 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGN-ARPRDLARLRTSLEQLPE 362 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 33 356779999999999999999887 599999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHhHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD 150 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~-------~~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (620)
+++.|.... .+.+..+...+.++.++.+.|+++|++ +++.|+|++|++|+.+|+..++..+++.
T Consensus 363 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 363 LRALLEELE---------GPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHHhcC---------cHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999886421 245667777888899999999999974 3457999999999999999888777776
Q ss_pred HHHHHHHHHHHHhcCCCCccccccc-CceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHH
Q 007057 151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (620)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~-~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~e 229 (620)
.+.++ +....+++...+.+.+ .||+|+|+.++...+|+.|++.+|.+|.++|++|. ++++++++.++..++..+
T Consensus 434 ~l~~~----~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~ 508 (840)
T TIGR01070 434 RLEAR----ERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILAL 508 (840)
T ss_pred HHHHH----HHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHH
Confidence 65443 3345677777776644 59999999999999997799999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 007057 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (620)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (620)
|.+|+.+|...|..+.+.+..+.+.++.|||++|+|.+|.+++||||.|+++. .+.|++||||+++. ...
T Consensus 509 e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~-~~~--- 578 (840)
T TIGR01070 509 EKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQ-VLR--- 578 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHh-ccC---
Confidence 99999999999999999999999999999999999999999999999998753 69999999999932 110
Q ss_pred cccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
..+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||++.
T Consensus 579 ----------------------------~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~- 629 (840)
T TIGR01070 579 ----------------------------TPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES- 629 (840)
T ss_pred ----------------------------CCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-
Confidence 126899999987657999999999999999999999999999999999996
Q ss_pred CCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEE
Q 007057 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (620)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vl 468 (620)
+.++++|+||+++|..|++..+.|||+.+|.+++.|+..+++++|+|+||+|+|||+.+|.+|++++++++.+ .++.++
T Consensus 630 a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~ 709 (840)
T TIGR01070 630 AELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTL 709 (840)
T ss_pred eEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred EEccChhHHhhccccceeeCceEEE--ecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 007057 469 VTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 539 (620)
Q Consensus 469 i~TH~~~l~~~~~~~~~~~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~ 539 (620)
++||++++..++.....+.|.+|.+ +.+.+.++|++..|.++.|||+++|+.+|+|++++++|++.+..+.
T Consensus 710 ~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le 782 (840)
T TIGR01070 710 FATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLE 782 (840)
T ss_pred EEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999988888889998877 5578999999999999999999999999999999999999987664
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=2.9e-69 Score=630.21 Aligned_cols=486 Identities=23% Similarity=0.351 Sum_probs=435.1
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~--~l-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||+|++|+|++.|+.|.++|++|++.++++.. .+ ...+..|++++|++|++.|+..|.. +++||..+++++..+..
T Consensus 298 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~-~~~dl~~l~~~l~~~~~ 376 (854)
T PRK05399 298 MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRA-NPRDLAALRDSLEALPE 376 (854)
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999986 22 3556699999999999999998875 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHhHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (620)
+++.+.... .+.+..+...+..+.++.+.|.++|+++ ++.|+|++|++|+.+|+..++..++++
T Consensus 377 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 447 (854)
T PRK05399 377 LKELLAELD---------SPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLA 447 (854)
T ss_pred HHHHHHhcC---------cHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999886421 2446667777888999999999999863 457999999999999999988888887
Q ss_pred HHHHHHHHHHHHhcCCCCcccccccC-ceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHH
Q 007057 151 SLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (620)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~~-r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~e 229 (620)
.+.++. ....+++...+.+.+. +|+|+|+.+....+|++|++.+|.+|.++|++|. +.++++++.++..++.++
T Consensus 448 ~~~~~~----~~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~ 522 (854)
T PRK05399 448 ELEARE----RERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALAL 522 (854)
T ss_pred HHHHHH----HHHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 776553 3445666666555443 7999999999889998899999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 007057 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (620)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (620)
|.+|+++|...+..+...+..+.+.+++|||++|+|.+|.+++||||+|++++ .+.|++||||+++. .+..
T Consensus 523 e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~-~~~~-- 593 (854)
T PRK05399 523 EYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQ-VLGG-- 593 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEec-ccCC--
Confidence 99999999999999999999999999999999999999999999999998753 69999999999942 1100
Q ss_pred cccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
+.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 594 ----------------------------~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~- 644 (854)
T PRK05399 594 ----------------------------EPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES- 644 (854)
T ss_pred ----------------------------CceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-
Confidence 126799999976558999999999999999999999999999999999996
Q ss_pred CCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEE
Q 007057 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAV 468 (620)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vl 468 (620)
+.++++|+||+++|..|++..+.|||+.+|.+++.++..+++++|+||||||+||++.+|.+++.++++++.+. ++++|
T Consensus 645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987 48999
Q ss_pred EEccChhHHhhccccceeeCceEEEec--CccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 007057 469 VTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 539 (620)
Q Consensus 469 i~TH~~~l~~~~~~~~~~~~g~~~~~~--~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~ 539 (620)
++||++++..++++...+.|.+|.++. +.+.++|++..|.++.|||+++|+.+|+|++++++|++....+.
T Consensus 725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le 797 (854)
T PRK05399 725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLE 797 (854)
T ss_pred EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 999999999999988889999998765 68999999999999999999999999999999999999988664
No 5
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-66 Score=585.12 Aligned_cols=521 Identities=36% Similarity=0.483 Sum_probs=462.8
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~ 79 (620)
.|++.+++ +-|.++.+.+...+++|.++..++. .+.+|+.++.|+...+.++.+|..+.++||+.|.+++.....++
T Consensus 24 ~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~~~~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~~~~~lk 101 (753)
T COG1193 24 LGLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLRGFRALK 101 (753)
T ss_pred HHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCCCchhhhhhHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 38899999 9999999999999999999999997 67899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007057 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (620)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (620)
.+++.... .. ..+...+..++.+...|..+||+++ .|.|.||+.|..||...+...+++.+.+......
T Consensus 102 r~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~ 170 (753)
T COG1193 102 RAIKKLER--------IK--RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRS 170 (753)
T ss_pred HHHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 99986422 11 4566778889999999999999985 7999999999999999877776666666554332
Q ss_pred HHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 007057 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (620)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~il~~L~~ 239 (620)
.- +..+++.+++.|++|||+|||++++..++ |++|+.|++|+|+|++|..++.+||.+..+..+|+.++.+|+++|+.
T Consensus 171 ~~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa 248 (753)
T COG1193 171 KE-AKYLQDRIVTTRDGREVLPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSA 248 (753)
T ss_pred hh-hHhhhhceEeccCCeEEeHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHH
Confidence 11 45577899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCc
Q 007057 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (620)
Q Consensus 240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (620)
.+.++...+..+...++++|++.|+++|+.++.++.|.+++.+ .|.+.++|||++.+
T Consensus 249 ~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~----------------- 305 (753)
T COG1193 249 LVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE----------------- 305 (753)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc-----------------
Confidence 9999999999999999999999999999999999999999643 79999999999932
Q ss_pred CCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHH
Q 007057 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (620)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~ 399 (620)
.|++++.+......++|||||.+|||+.||++|+..+|+|+|.++|+.....+++|++++
T Consensus 306 --------------------~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~ 365 (753)
T COG1193 306 --------------------DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIF 365 (753)
T ss_pred --------------------ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhh
Confidence 256777777766899999999999999999999999999999999998777999999999
Q ss_pred HHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
.++|+.|++.+.+||||++|..+..++.-+. +|+++||.++||||.+|.+++.++++++.++++.++++||+.+++.+
T Consensus 366 aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~ 443 (753)
T COG1193 366 ADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKAL 443 (753)
T ss_pred hccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHH
Confidence 9999999999999999999999888884344 89999999999999999999999999999999999999999999999
Q ss_pred ccccceeeCceEEEecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHhHHHHHHHHHHHHHH
Q 007057 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (620)
Q Consensus 480 ~~~~~~~~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (620)
+.....+.|++|.|+.+++.|+|++..|.++.|+|+.+|.++|+|..+++.|+..... +....+.+++.++....
T Consensus 444 ~~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~ 518 (753)
T COG1193 444 AAEREGVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRK 518 (753)
T ss_pred HhcchhhhchhhhhhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987752 34566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007057 560 KLESQARTAASLHAEIMDLYREVYTFC 586 (620)
Q Consensus 560 ~le~~~~~~~~~~~~~~~~~~~l~~~~ 586 (620)
++++..+.++.+.++.+.+...+...+
T Consensus 519 ~~~~~~~~~e~~~~e~~~l~~~~s~~~ 545 (753)
T COG1193 519 ELEEELEEVEKLLDEVELLTGANSGGK 545 (753)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcch
Confidence 777666555554444444444443333
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-66 Score=592.19 Aligned_cols=491 Identities=24% Similarity=0.348 Sum_probs=432.4
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l---~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||+|++++|+.+|+.+.++|+.||+-++++.... +.....|++++|++|++.|+..|+. +|+||..+++++..+..
T Consensus 296 mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~-~~rDl~~l~~~l~~~~~ 374 (843)
T COG0249 296 MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRA-SPRDLLRLRDSLEKIPE 374 (843)
T ss_pred hhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCC-ChhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999887743 2456689999999999999999997 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHhHHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDS 151 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~~------~~I~d~as~~L~~iR~~~~~~~~~l~~ 151 (620)
++..+..... ...+.++...+..++.+.++...+..+|.++. +.|+++++++|+.+|...+...+++..
T Consensus 375 i~~~l~~~~~-----~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~ 449 (843)
T COG0249 375 IFKLLSSLKS-----ESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAK 449 (843)
T ss_pred HHHHHhcccc-----chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999876432 11123333323344445688899999998654 268899999999999998877777766
Q ss_pred HHHHHHHHHHHhcCCCCcccccccC-ceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHH
Q 007057 152 LLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (620)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~i~~r~~-r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee 230 (620)
+... +....|++..++.+++- +|+|.|+.+....+|++|++.++.++..+|.+|. +.+++.++..+.......|
T Consensus 450 le~~----~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE 524 (843)
T COG0249 450 LELE----ERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALE 524 (843)
T ss_pred HHHH----HHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHH
Confidence 6443 55678899888888776 8999999999999998899999999999999996 7778888877888888899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhccc
Q 007057 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (620)
Q Consensus 231 ~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~ 310 (620)
.+++.++.+.+..+.+.|+.+...+|+|||++|+|..|...+||||+++++. .+.|++||||+++. .+..
T Consensus 525 ~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~-~~~~--- 594 (843)
T COG0249 525 YELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEA-VLDN--- 594 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhh-hccC---
Confidence 9999999999999999999999999999999999999999999999999864 39999999999943 2211
Q ss_pred ccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC
Q 007057 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (620)
Q Consensus 311 ~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~ 390 (620)
.+||+|+.+.+..++++|||||||||||+||++|++++|||+|+|||++. +
T Consensus 595 ----------------------------~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A 645 (843)
T COG0249 595 ----------------------------GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-A 645 (843)
T ss_pred ----------------------------CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-c
Confidence 16899999988559999999999999999999999999999999999996 8
Q ss_pred CccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEE
Q 007057 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVV 469 (620)
Q Consensus 391 ~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli 469 (620)
.++++|+||+++|..|++.++-|||+.+|.+++.|+..+++.+|+||||.|+||++.+|.+|++|+++|+++. ++.+|+
T Consensus 646 ~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLF 725 (843)
T COG0249 646 RIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLF 725 (843)
T ss_pred cccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 889999
Q ss_pred EccChhHHhhccccceeeCceEEE--ecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcch
Q 007057 470 TTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE 541 (620)
Q Consensus 470 ~TH~~~l~~~~~~~~~~~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~~~ 541 (620)
+|||+++..+......+.|.++.. ..+++.+.|++..|.+..|||+.+|+.+|+|.+++++|++.+..+...
T Consensus 726 ATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~ 799 (843)
T COG0249 726 ATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKE 799 (843)
T ss_pred eccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 999999999998888888887754 345688999999999999999999999999999999999999876443
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-51 Score=441.95 Aligned_cols=493 Identities=22% Similarity=0.308 Sum_probs=366.4
Q ss_pred chHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH------hcCCCCCCCCcCHHHHHHHHhcCCCCCH-HHHHHHHHHHHH
Q 007057 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM------QSQPLDLSTIEDIAGILNSAVSGQLLSP-SEICAVRRTLRA 74 (620)
Q Consensus 2 G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l------~~~~~~l~~i~Di~~~l~r~~~g~~l~~-~el~~i~~~l~~ 74 (620)
|+|++|+|+..|+-|...|..||+.++|.-.-. +...--+...|||.|.+.|+-.|++ +| +|++.+..++..
T Consensus 495 G~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tC-tp~~eff~vlk~iy~ 573 (1070)
T KOG0218|consen 495 GLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTC-TPRKEFFFVLKQIYS 573 (1070)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccC-CcHHHHHHHHHHHHH
Confidence 899999999999999999999999999882111 1123346789999999999999997 55 899888877766
Q ss_pred HHHHHHH----HHHhhhccCCcccccchHHHHHhcCC------ChHHHHHHHhhhhccCCC---cccC--------CcCH
Q 007057 75 VNNVWKK----LTEAAELDGDSLQRYSPLLELLKNCN------FLTELEEKIGFCIDCKLL---IILD--------RASE 133 (620)
Q Consensus 75 ~~~l~~~----l~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~l~~~I~~~id~~~~---~I~d--------~as~ 133 (620)
+..-... ++....-+...-.+.+-|+.++..++ ..+.+...++..-..++. .++| ....
T Consensus 574 a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~d 653 (1070)
T KOG0218|consen 574 AVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESED 653 (1070)
T ss_pred HHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhh
Confidence 5433332 22110000111112233555666552 223333333222111111 1222 2222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhh
Q 007057 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAV 213 (620)
Q Consensus 134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~ 213 (620)
....||+.+. .+..++.-|++. ++++....++ +.+..+..|||+||.+....+|+.||.-.|.....+|.+|. ++
T Consensus 654 i~~virE~~m-s~~~~~~hLaei-Rk~Lk~pnle--f~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq 728 (1070)
T KOG0218|consen 654 IIKVIRESEM-SRSQLKEHLAEI-RKYLKRPNLE--FRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQ 728 (1070)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-HHHhcCCCce--eEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HH
Confidence 2222332221 111122233332 2333322221 23334448999999999899999999999989999999996 66
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEc
Q 007057 214 EFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIE 293 (620)
Q Consensus 214 ~l~n~~~~l~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~ 293 (620)
++-.++......-..+-...++..-..+.++..+++.+...+|.+||++++|+.+...|||||+|+++- ..|.|+
T Consensus 729 ~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~-----~eI~ik 803 (1070)
T KOG0218|consen 729 KLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ-----QEIIIK 803 (1070)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch-----hhhhhh
Confidence 665555544444344455678888899999999999999999999999999999999999999999852 369999
Q ss_pred ccccCccccchhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecC-CceEEEEEcCCCCcHhHHHHHHh
Q 007057 294 GIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 294 ~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~-g~~~~~I~GpNGsGKSTlLk~iG 372 (620)
+||||++ +..+. +.+||+++.+.+ |.++.+||||||+|||.++|+++
T Consensus 804 ngRhPvI-e~Ll~-------------------------------d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvA 851 (1070)
T KOG0218|consen 804 NGRHPVI-ESLLV-------------------------------DYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVA 851 (1070)
T ss_pred cCCCchH-HHHhh-------------------------------hccCCCcceecCCCceEEEEeCCCCCCchHHHHHHH
Confidence 9999999 33332 136777777753 45899999999999999999999
Q ss_pred hhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHH
Q 007057 373 LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (620)
Q Consensus 373 li~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l 452 (620)
|+.+|||+|+|||++. +.+++||.+|+++|..|++..+-|||+.+|.....++.-+++.+++||||.|+||...+|.+|
T Consensus 852 LitIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAI 930 (1070)
T KOG0218|consen 852 LITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAI 930 (1070)
T ss_pred HHHHHHHhcCccchHH-hhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhH
Confidence 9999999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CcEEEEEccChhHHhhccccce-eeCceEEE---------ecCccccchhhccCCCCCchHHHHHHHc
Q 007057 453 ATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-FENAATEF---------SLETLRPTYRILWGSTGDSNALNIAKSI 521 (620)
Q Consensus 453 ~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~-~~~g~~~~---------~~~~l~~~y~l~~g~~~~s~a~~ia~~~ 521 (620)
+.|.++|+.+. .+.+++|||++.+..+...... +.+.+|.| |.+.+.++|++..|.+.+||++++|+.+
T Consensus 931 sYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA 1010 (1070)
T KOG0218|consen 931 SYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLA 1010 (1070)
T ss_pred HHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHh
Confidence 99999999865 5678999999998877664432 45555544 2345778999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 007057 522 GFDRKIIQRAQKLVERL 538 (620)
Q Consensus 522 g~~~~v~~~a~~~~~~~ 538 (620)
++|.+++.+|-...+.+
T Consensus 1011 ~ip~sii~rA~siSeel 1027 (1070)
T KOG0218|consen 1011 RIPKSIINRAFSISEEL 1027 (1070)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998876644
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-46 Score=412.67 Aligned_cols=488 Identities=20% Similarity=0.282 Sum_probs=393.0
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ----SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l~----~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (620)
||.++++.|.-+|..+++.++++++.+++.+...+ -..--+..+|||.++..++..+ +..|...+.+....++
T Consensus 326 ~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~~---~L~d~~r~yq~~~~l~ 402 (902)
T KOG0219|consen 326 QGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLMKA---NLQDVNRIYQAAKLLP 402 (902)
T ss_pred cchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhhhc---chHHHHHHHHHHHHhH
Confidence 69999999999999999999999999887655442 1234578899999999998832 5688888888888888
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhcc-----CCCcccCCcCHHHHHHHHHHHHhHHHHHH
Q 007057 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILDRASEDLELIRAERKRNMENLDS 151 (620)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~-----~~~~I~d~as~~L~~iR~~~~~~~~~l~~ 151 (620)
.+...|.+... ....-...|+ ......+.++...+..++|. +...|+.+++++|.+||+++.++++.+.+
T Consensus 403 ~~~~~l~~~~~--~~~~ll~~~l---~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~ 477 (902)
T KOG0219|consen 403 TVVQVLISLSE--SHNRLLKSPL---TEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEK 477 (902)
T ss_pred HHHHHHHhhhh--hhhhhhhhhh---hhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHH
Confidence 87776654322 0000001122 22334455566666666662 33469999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcccccccC---ceEEEEecccccCC--CCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHH
Q 007057 152 LLKKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLL--PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSE 226 (620)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~i~~r~~---r~~i~vk~~~~~~~--~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e 226 (620)
..+++..+.-+.+ +..+...+. +||..+.......+ ..++..-++.+| .+|++....-.|||+....+.+-
T Consensus 478 ~hkrv~~dl~~D~---~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y 553 (902)
T KOG0219|consen 478 LHKKVSADLGLDP---KKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEY 553 (902)
T ss_pred HHHHHHhhcCCCc---ccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHH
Confidence 8877655433322 223333332 89988876443322 235655555555 56777777889999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccceecCCCCCCCcceEEEcccccCccccch
Q 007057 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 304 (620)
Q Consensus 227 ~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~ 304 (620)
+.++..|.+++..--..|.+.+..+.+.+|.|||+.|+|.+|. -..|+||.+.+.+. ..+.++++|||+++.+.
T Consensus 554 ~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs----~rl~l~~~rHp~lE~Qd 629 (902)
T KOG0219|consen 554 DEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGS----KRLELKQSRHPVLEGQD 629 (902)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccch----hHHHHHhcccchhhccc
Confidence 8889999999999999999999999999999999999999887 46799999988642 36899999999995321
Q ss_pred hhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceec--CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCc
Q 007057 305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL 382 (620)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~--~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~ 382 (620)
. -.++|++..++ ++ ++.+||||||+||||++|+.|.+.+|||+|+
T Consensus 630 -----~---------------------------~~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGc 676 (902)
T KOG0219|consen 630 -----E---------------------------IPFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIGC 676 (902)
T ss_pred -----c---------------------------CCCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhCC
Confidence 0 02566666666 66 8999999999999999999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Q 007057 383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (620)
Q Consensus 383 ~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~ 462 (620)
|||++. +.++++|.|++++|.+|+..+++||||.+|-..+.|+..+++.+||++|||++||...+|-.+++++-+++..
T Consensus 677 fVPce~-A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ 755 (902)
T KOG0219|consen 677 FVPCES-ATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIAT 755 (902)
T ss_pred ceehhh-cCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHH
Confidence 999996 8999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CcEEEEEccChhHHhhccccceeeCceEEEe--cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007057 463 R-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (620)
Q Consensus 463 ~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~ 538 (620)
+ |+..|++||++++..++.....+.|-+|... .+.+.-.|.+..|+++.|+++.+|+.+|+|+.+++.|++...++
T Consensus 756 ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~el 834 (902)
T KOG0219|consen 756 KIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEEL 834 (902)
T ss_pred HHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHH
Confidence 5 6778999999999998888888887776543 35567789999999999999999999999999999999887643
No 9
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-44 Score=380.50 Aligned_cols=487 Identities=22% Similarity=0.257 Sum_probs=378.8
Q ss_pred chHhHhccCCCCCCCHHHHHHHHHHHHHHHHH-----HhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007057 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAM-----MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (620)
Q Consensus 2 G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~-----l~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (620)
|++.+|.|+..|.+|.+++..|++-+.-+..- -+...-.++.++|+..++++.+.|.. ...++-.++.++.++-
T Consensus 281 g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t-~l~~W~~~~stv~~~~ 359 (849)
T KOG0221|consen 281 GEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT-KLSDWQVLYSTVYSAL 359 (849)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-eechHHHHHHHHHHHH
Confidence 78999999999999999999999866533210 00123467889999999999999876 6789999999999998
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHh-cCCChHHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHhHHHH
Q 007057 77 NVWKKLTEAAELDGDSLQRYSPLLELLK-NCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENL 149 (620)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~I~~~id~~~------~~I~d~as~~L~~iR~~~~~~~~~l 149 (620)
.+++.+....- +. .++. ...+ .+..+.++...|..+||-++ ..|..+.+++|++.|+.+. .+
T Consensus 360 ~i~~~~rslp~----s~-~~~~--~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~----~l 428 (849)
T KOG0221|consen 360 GIRDACRSLPQ----SI-QLFR--DIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYM----GL 428 (849)
T ss_pred HHHHHHHhCcc----ch-hhhh--HHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHc----cc
Confidence 88888865421 10 1111 1111 12345677788888888543 3688999999999998765 45
Q ss_pred HHHHHHHHHHHHHhc--CCCCccccccc-CceEEEEecccccCCC----CcEEEEEecCCcEEEeccchhhhhhhHHHHH
Q 007057 150 DSLLKKVAAQIFQAG--GIDKPLITKRR-SRMCVGIKASHKYLLP----DGIALNVSSSGATYFMEPKGAVEFNNMEVRL 222 (620)
Q Consensus 150 ~~~l~~~~~~~~~~~--~~~~~~i~~r~-~r~~i~vk~~~~~~~~----~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l 222 (620)
..+|.+.+++....- .+..--+++.. -+|++.|+.-+.-... .||-.-.+ +...+|+.....-+|.+.+.++
T Consensus 429 p~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~-s~E~l~~rnart~eLD~~~GDI 507 (849)
T KOG0221|consen 429 PSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFL-SEEKLHYRNARTKELDALLGDI 507 (849)
T ss_pred hHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhc-ccceeEeecccHHhHHHHhhhH
Confidence 667777666544321 12222222222 2666666543322111 23333333 3445666677788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCcccc
Q 007057 223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLG 302 (620)
Q Consensus 223 ~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~ 302 (620)
.-+....|..|+-.|..+|......|.+......+||+++|+|..|.+++|+||.++++. -.++|.+||||+++
T Consensus 508 y~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~-----~il~I~ngrh~l~e- 581 (849)
T KOG0221|consen 508 YCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV-----LILRIQNGRHPLME- 581 (849)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH-----HHHHHHcCChhHHH-
Confidence 999999999999999999999999999999999999999999999999999999999864 24799999999983
Q ss_pred chhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceec-CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhC
Q 007057 303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381 (620)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~-~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G 381 (620)
.... .+||++..+. .+.++.+|||||.||||.+||++|++++|+|+|
T Consensus 582 ~~~d--------------------------------tfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIG 629 (849)
T KOG0221|consen 582 LCAD--------------------------------TFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIG 629 (849)
T ss_pred HHHH--------------------------------hcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhc
Confidence 2211 2678888886 333999999999999999999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q 007057 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (620)
Q Consensus 382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~ 461 (620)
+|||++. +.++.+|.|+++++.-+++....|||.-...|++.++..++..+|+|+||.+.||+..+|.+|..+++.+..
T Consensus 630 sFVPAe~-A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~ 708 (849)
T KOG0221|consen 630 SFVPAEE-AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWL 708 (849)
T ss_pred cccchhh-hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHH
Confidence 9999996 899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCc---EEEEEccChhHHhh-c-cccceeeCceE---EEecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHH
Q 007057 462 DRVG---LAVVTTHYADLSCL-K-DKDTRFENAAT---EFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK 533 (620)
Q Consensus 462 ~~~~---~vli~TH~~~l~~~-~-~~~~~~~~g~~---~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~ 533 (620)
.+|. +|++.||++++... + ...+..+-..| ..+.+.+.+.|+...|....|+|+.+|+..|+|++++.||++
T Consensus 709 ~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~ 788 (849)
T KOG0221|consen 709 ARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKE 788 (849)
T ss_pred hcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHH
Confidence 7764 59999999996532 1 11111111111 124567889999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 007057 534 LVERLRP 540 (620)
Q Consensus 534 ~~~~~~~ 540 (620)
.......
T Consensus 789 v~~ai~s 795 (849)
T KOG0221|consen 789 VSDAIRS 795 (849)
T ss_pred HHHHHHc
Confidence 8765543
No 10
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-43 Score=393.54 Aligned_cols=491 Identities=19% Similarity=0.252 Sum_probs=377.2
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~--~l~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
+|||+++.|.+.|+-+...|++|++.+.-... ... +..-.|..+||++|+|.|+-.+..-...++.+..+.|..++.
T Consensus 574 fGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~ 653 (1125)
T KOG0217|consen 574 FGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKE 653 (1125)
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence 59999999999999999999999997766555 111 344578999999999999988775457788888888888887
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHh-cCCChHHHHHHH---hhhhcc----CCCcccC--CcCHHHHHHHHHHHHhHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLK-NCNFLTELEEKI---GFCIDC----KLLIILD--RASEDLELIRAERKRNME 147 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~I---~~~id~----~~~~I~d--~as~~L~~iR~~~~~~~~ 147 (620)
+...+...... . .......++. .+..+|++...| ..+.|. +.+.|-+ +++.+++..-+..++++.
T Consensus 654 ~~~~~~~~~~v----~-~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~ 728 (1125)
T KOG0217|consen 654 INKLLGSLINV----L-KEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAEN 728 (1125)
T ss_pred HHHHHHHHHHH----H-HhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHH
Confidence 77766543320 0 0112222232 223345554444 333443 1123444 578889998888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-cccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHH---h
Q 007057 148 NLDSLLKKVAAQIFQAGGIDK-PLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRL---S 223 (620)
Q Consensus 148 ~l~~~l~~~~~~~~~~~~~~~-~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l---~ 223 (620)
.+..+|..+..++ +... .+.+.-.+.|.+.|+.+....++..|+..++..|..+|+.|. +...+..+ .
T Consensus 729 ~L~~~L~~~rk~l----~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~----~~kli~~l~~ae 800 (1125)
T KOG0217|consen 729 ELLAYLEEYRKRL----GCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPD----LRKLIAHLDEAE 800 (1125)
T ss_pred HHHHHHHHHHHhc----CCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHH----HHHHHHHHHHHH
Confidence 8888877754332 1111 122333357999999988777766688889999999999996 22222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccceecCCCCCCCcceEEEcccccCccc
Q 007057 224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (620)
Q Consensus 224 ~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~--~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 301 (620)
.....-...+.+.+...+.++....+.++..++.|||++++|.+|+-++ +|||++++..+. .+.+.+++.|||.+.
T Consensus 801 e~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt--~~~l~~~~~~Hpcfs 878 (1125)
T KOG0217|consen 801 ERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDT--PGFLIVKGLRHPCFS 878 (1125)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCC--CceeEEecccCceee
Confidence 2222333467788888888888889999999999999999999998876 699999875421 236999999999984
Q ss_pred cchhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceec-CCc-eEEEEEcCCCCcHhHHHHHHhhhHHHHh
Q 007057 302 GSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CET-RVVVITGPNTGGKTASMKTLGLASLMSK 379 (620)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~-~g~-~~~~I~GpNGsGKSTlLk~iGli~~~a~ 379 (620)
.... ++.++|+++.+. .+. .+.++|||||+|||||||++++.++|||
T Consensus 879 l~s~-------------------------------~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq 927 (1125)
T KOG0217|consen 879 LPST-------------------------------GTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQ 927 (1125)
T ss_pred cCcC-------------------------------CCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHH
Confidence 3211 112678888886 322 4445999999999999999999999999
Q ss_pred hCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 007057 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (620)
Q Consensus 380 ~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~ 459 (620)
+|++||++. ..++.+|.|++++|..|.+-.+.|||..+....+.|+..+++.+||++||.++||...+|.+|+.+++++
T Consensus 928 ~G~~VPa~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~ 1006 (1125)
T KOG0217|consen 928 IGCDVPAEV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEH 1006 (1125)
T ss_pred hCCCccHHH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHH
Confidence 999999986 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-CcEEEEEccChhHHhhccccceeeCceEE--EecCc-cccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHH
Q 007057 460 LRDR-VGLAVVTTHYADLSCLKDKDTRFENAATE--FSLET-LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535 (620)
Q Consensus 460 l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~--~~~~~-l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~ 535 (620)
+... .+..+++|||+.+.....+.+.+..++|. .+.+. +.++|++..|.++.||+..+|+.+|+|.+++++|....
T Consensus 1007 l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a 1086 (1125)
T KOG0217|consen 1007 LSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKA 1086 (1125)
T ss_pred HHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHH
Confidence 9874 66789999999987665666666666663 34444 88999999999999999999999999999999998876
Q ss_pred HHh
Q 007057 536 ERL 538 (620)
Q Consensus 536 ~~~ 538 (620)
..+
T Consensus 1087 ~E~ 1089 (1125)
T KOG0217|consen 1087 HEL 1089 (1125)
T ss_pred HHH
Confidence 543
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-42 Score=374.94 Aligned_cols=482 Identities=19% Similarity=0.281 Sum_probs=376.5
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhc----CCCCCH----HHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVS----GQLLSP----SEICAVR 69 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l---~~~~~~l~~i~Di~~~l~r~~~----g~~l~~----~el~~i~ 69 (620)
||.+.+|+-+++|+++...+..+|+.++|..+-- .++++.++..+|...++..+.. ..+-.+ --+..++
T Consensus 294 ~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk 373 (867)
T KOG0220|consen 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLK 373 (867)
T ss_pred cchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHH
Confidence 6999999999999999999999998888775532 2678889999999888877532 111111 1245666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcccccchHHHHHhcC--CChHHHHHHHhhhhccCC--------------CcccCCcCH
Q 007057 70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNC--NFLTELEEKIGFCIDCKL--------------LIILDRASE 133 (620)
Q Consensus 70 ~~l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~l~~~I~~~id~~~--------------~~I~d~as~ 133 (620)
.+|.....++..+.... .+.+.++-..+ .-+..+.+.|..+|+++. ..|+.+...
T Consensus 374 ~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 374 HTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 77777777776664321 23344444433 335567888888888753 146777788
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCcccccccC-ceEEEEecc----cccCCCCcEEEEEecCCcEEEec
Q 007057 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKAS----HKYLLPDGIALNVSSSGATYFME 208 (620)
Q Consensus 134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~-r~~i~vk~~----~~~~~~~g~~~~~s~~g~~~~~e 208 (620)
.|+-.|+-..++.+.......++..+. --.....+.+. ||.+.++.. ....+| ..+...+.....+-..
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~-----~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~ 518 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF-----SLNLRLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFT 518 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-----CccccccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeec
Confidence 889888877776655555444433222 11223333333 677776665 345566 3444555555555566
Q ss_pred cchhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcc
Q 007057 209 PKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS 288 (620)
Q Consensus 209 p~~~~~l~n~~~~l~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~ 288 (620)
...++.+|.++.+...++.-.-..++..|...|..+...+..+.+++.-||+++++|......++++|++++
T Consensus 519 s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~-------- 590 (867)
T KOG0220|consen 519 SADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD-------- 590 (867)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--------
Confidence 677888998887776666656667889999999999999999999999999999999999888999999987
Q ss_pred eEEEcccccCccccchhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHH
Q 007057 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM 368 (620)
Q Consensus 289 ~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlL 368 (620)
.+.|.+||||+|+.... ++++.++..+..+.++.+|+|||||||||+|
T Consensus 591 slaI~qGRHPILe~i~~--------------------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYL 638 (867)
T KOG0220|consen 591 SLAIKQGRHPILEKISA--------------------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYL 638 (867)
T ss_pred ceeeccCCCchhhhhcc--------------------------------cCcccCcceeecccceEEEECCCCCcchHHH
Confidence 39999999999954211 1356677777777789999999999999999
Q ss_pred HHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 369 k~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
|+++++++|||+|+|+|+.- +.+++|++||+++|-.|.+.++-|+|..+|+..+.++..+++.+||+|||.++||...+
T Consensus 639 KQvAl~~IMAQIGc~IPA~Y-aS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TStee 717 (867)
T KOG0220|consen 639 KQVALCQIMAQIGSYVPAEY-ASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEE 717 (867)
T ss_pred HHHHHHHHHHHhccCcchhh-ccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcccc
Confidence 99999999999999999984 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEec--Ccccc-chhhccCCC-CCchHHHHHHHcCCC
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRP-TYRILWGST-GDSNALNIAKSIGFD 524 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~--~~l~~-~y~l~~g~~-~~s~a~~ia~~~g~~ 524 (620)
|.++.+|+.+++.+-...++++||+.+++.++...+.+.|-++..+. .+..+ .|++..|.. +..+++++++..-+|
T Consensus 718 GiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iP 797 (867)
T KOG0220|consen 718 GIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLP 797 (867)
T ss_pred chhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCC
Confidence 99999999999998889999999999999999999999998876543 22222 488887754 457889999999999
Q ss_pred HHHHHHHHHHHHHh
Q 007057 525 RKIIQRAQKLVERL 538 (620)
Q Consensus 525 ~~v~~~a~~~~~~~ 538 (620)
+++++.|+.+....
T Consensus 798 d~i~e~a~~~~t~i 811 (867)
T KOG0220|consen 798 DSIVEDAKEITTQI 811 (867)
T ss_pred HHHHHhhhHHHHHH
Confidence 99999999876543
No 12
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.2e-40 Score=334.27 Aligned_cols=228 Identities=36% Similarity=0.637 Sum_probs=184.2
Q ss_pred CccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCc-
Q 007057 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET- 351 (620)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~- 351 (620)
||+|+|+++. .+.++++|||+++.. +++ +.+|++|+.+..+.
T Consensus 1 y~~P~~~~~~------~l~i~~~~HPll~~~-~~~------------------------------~~~v~ndi~~~~~~~ 43 (235)
T PF00488_consen 1 YCRPKISEEK------SLKIKEGRHPLLEEK-LEN------------------------------KKFVPNDIELSNNKS 43 (235)
T ss_dssp EB-EEEESTT------EEEEEEE--TTHHHH-TTT------------------------------SSC--EEEEESSSSS
T ss_pred CcccEEcCCC------CEEEEeccCCEEecc-ccC------------------------------CceecceeecCCCce
Confidence 6999999864 799999999999432 111 12679999998773
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCC
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~ 431 (620)
++++|||||+|||||+||++|++.+|||+|+|||++. +.+++||+|+++++..|++..+.|+|..+|++++.++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 5999999999999999999999999999999999996 889999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe--cCccccchhhccCC
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS 508 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~--~~~l~~~y~l~~g~ 508 (620)
.+|+|+||+++||++.+|.+++.+++++|.+ .++.+|++||+.++..+......+.+.++.+. .+.+.++|++..|.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~ 202 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI 202 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence 9999999999999999999999999999998 58899999999998877666555666666554 46788999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007057 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (620)
Q Consensus 509 ~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~ 538 (620)
+..|+|+.+|+.+|+|++++++|+++.+.+
T Consensus 203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~l 232 (235)
T PF00488_consen 203 CSSSYAIEIAKLAGLPEEIIERAKEILKQL 232 (235)
T ss_dssp -SSTCHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2e-37 Score=310.60 Aligned_cols=194 Identities=28% Similarity=0.499 Sum_probs=175.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~kr 421 (620)
++++...++ ++++|+||||+||||+||++|++.+|+|+|+|+|+.. ..++.+++++.++|..++..++.|+||.++++
T Consensus 22 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~ 99 (222)
T cd03285 22 DVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMAEMLE 99 (222)
T ss_pred eEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHHHHHH
Confidence 455555566 8999999999999999999999999999999999986 78999999999999999999999999999998
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEec----C
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL----E 496 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~----~ 496 (620)
++.++..+++|+|+|||||++||++.++.++.+++++++.+ .++++|++||+.++..+|++...+.+|++..+. +
T Consensus 100 ~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~ 179 (222)
T cd03285 100 TAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASR 179 (222)
T ss_pred HHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCC
Confidence 88887778999999999999999999999999988888875 478999999998899999999999999987654 6
Q ss_pred ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 007057 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (620)
Q Consensus 497 ~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~ 537 (620)
.+.++|++..|.++.|+|+.+|+..|+|++++++|+++.+.
T Consensus 180 ~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 180 TLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE 220 (222)
T ss_pred cEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999998764
No 14
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1.8e-37 Score=306.29 Aligned_cols=184 Identities=54% Similarity=0.839 Sum_probs=171.3
Q ss_pred cccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 340 ~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
++++|+++.+|.++++|+||||||||||||++|+..+++|+|+++|+.....++++++++..++..+++...+|+||+||
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~ 96 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHM 96 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHH
Confidence 67999999998458999999999999999999999999999999999866788899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEecCccc
Q 007057 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499 (620)
Q Consensus 420 krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~~~l~ 499 (620)
+|+..+...+.+|+++|+|||++|||+..+..+...+++.+.+.+.++|++||+.++..++++...+.+|++.++.+.+.
T Consensus 97 ~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~~ 176 (200)
T cd03280 97 KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLK 176 (200)
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCccc
Confidence 98777777789999999999999999999999987788888877889999999988889999999999999999999999
Q ss_pred cchhhccCCCCCchHHHHHHHcCC
Q 007057 500 PTYRILWGSTGDSNALNIAKSIGF 523 (620)
Q Consensus 500 ~~y~l~~g~~~~s~a~~ia~~~g~ 523 (620)
++|++..|.++.|+|.++|+++|+
T Consensus 177 ~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 177 PTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred EEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999985
No 15
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.7e-37 Score=306.95 Aligned_cols=190 Identities=31% Similarity=0.522 Sum_probs=171.4
Q ss_pred ccc--ccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH
Q 007057 340 PVP--IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (620)
Q Consensus 340 ~v~--vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg 417 (620)
+|+ +++...+| ++++|+||||+||||+++++|++.+|+|+|+|||++. +.++++++++++++..|++..+.|+|+.
T Consensus 18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~ 95 (218)
T cd03286 18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV 95 (218)
T ss_pred eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence 554 44445557 8999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhccccceeeCceEEEec-
Q 007057 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (620)
Q Consensus 418 g~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~- 495 (620)
++++++.++..+++|+|+|||||++||||.++.+++.++++++.+. ++++|++||++++.........+.+.+|.++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~ 175 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK 175 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999886 88999999999977554444567777776643
Q ss_pred -------CccccchhhccCCCCCchHHHHHHHcCCCHHHHHHH
Q 007057 496 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (620)
Q Consensus 496 -------~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a 531 (620)
+++.++|++..|.++.|+|+.+|+.+|+|++++++|
T Consensus 176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 578999999999999999999999999999999876
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.4e-36 Score=303.50 Aligned_cols=188 Identities=31% Similarity=0.547 Sum_probs=170.1
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~kr 421 (620)
++++.+..| ++++|+||||+||||+||++|++.+++++|+++|+.. +.+++|++|+++++..|++..+.|+|+.++++
T Consensus 23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence 666677778 9999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhcccc-ceeeCceEEEe-----
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFS----- 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~-~~~~~g~~~~~----- 494 (620)
++.++..+++++|+|||||++|||+.++.+++.++++++.+. +.++|++||+.++..+.... ..+.+.++.++
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 180 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD 180 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999887 78999999999988776542 23556666543
Q ss_pred -----cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHH
Q 007057 495 -----LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (620)
Q Consensus 495 -----~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a 531 (620)
.+.+.++|++..|.++.|+|+.+|+..|+|++++++|
T Consensus 181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 2468899999999999999999999999999999876
No 17
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=2.5e-35 Score=294.23 Aligned_cols=194 Identities=29% Similarity=0.507 Sum_probs=177.7
Q ss_pred cccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 340 ~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
+|++++.+..+.++++|+|||||||||+||++|++.++++.|+++|+.. ..++++++++..++..+++..+.|+|..++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~ 97 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM 97 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence 4677777765548999999999999999999999999999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhccccceeeCceEEEe--cC
Q 007057 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LE 496 (620)
Q Consensus 420 krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~--~~ 496 (620)
.+++.++..+++|+++|||||++||++.++.++..++++++.+. ++++|++||+.++..++++...+.++++.++ .+
T Consensus 98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 99999999899999999999999999999999888899999887 8899999999999999998888899998774 46
Q ss_pred ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 007057 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (620)
Q Consensus 497 ~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~ 534 (620)
.+.++|++..|.++.|+|+.+|++.|+|++++++|+++
T Consensus 178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 78899999999999999999999999999999999985
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=9.9e-35 Score=287.18 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=160.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~kr 421 (620)
++++++..| ++++|+||||+||||+||+++.+.+|+|+|+++|+.. +.++++++++..++..+++.++.|+||+||++
T Consensus 21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 677777778 9999999999999999999999999999999999986 78999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEec---Ccc
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETL 498 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~---~~l 498 (620)
+..+..++++|+++|||||++||||.++.++..++++++.+.+.++|++||+.++...+.....+.+.++..+. +.+
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI 178 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence 99999999999999999999999999999999999999998899999999999987766554445555555442 677
Q ss_pred ccchhhccCCCC-CchHHHHHHHcC
Q 007057 499 RPTYRILWGSTG-DSNALNIAKSIG 522 (620)
Q Consensus 499 ~~~y~l~~g~~~-~s~a~~ia~~~g 522 (620)
.++|++..|.+. .+||+.+|+.+.
T Consensus 179 ~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 179 EMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred eeEEEEeeCCCCCCccHHHHHHHhh
Confidence 899999999999 999999998753
No 19
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=5.7e-34 Score=298.64 Aligned_cols=284 Identities=19% Similarity=0.194 Sum_probs=233.2
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~--~l-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||++++++|++.|.++.++|++|++.++++.. .+ .....+|++++|+++++.++..|. +++.||..++.++..+..
T Consensus 15 ~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~~~~el~~l~~~l~~~~~ 93 (308)
T smart00533 15 MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGR-ASPRDLLRLYDSLEGLKE 93 (308)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999988 33 345568999999999999999886 599999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHH-H----HhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHhHHHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLE-L----LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSL 152 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~-l----~~~~~~~~~l~~~I~~~id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~ 152 (620)
++++|..... ..+.++.. + ...+..+.++...+..+++++.+.|+|++|++|+.+|+.++++...+++.
T Consensus 94 l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~ 167 (308)
T smart00533 94 IRQLLESLDG------PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEEL 167 (308)
T ss_pred HHHHHHhcCc------HHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999865311 00112221 1 11122233344445555555556899999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHH
Q 007057 153 LKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (620)
Q Consensus 153 l~~~~~~~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~ 232 (620)
+++...+. ....++..+++.+ +|||+|+.++...+| |.+++.|++|+++|++|..++++|+++.++..++..++.+
T Consensus 168 ~~~~~~~~-~~~~l~~~~~~~~--g~~i~v~~~~~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (308)
T smart00533 168 LKKEREEL-GIDSLKLGYNKVH--GYYIEVTKSEAKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKE 243 (308)
T ss_pred HHHHHHHh-CCCceEEeEeccE--EEEEEecchhhccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754321 1122333344444 399999999999999 6778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccc
Q 007057 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (620)
Q Consensus 233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 301 (620)
|+++|+..+.++.+.+..+++.+++|||++|+|.+|.+++||+|.|++++ .+.+++||||+++
T Consensus 244 i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~------~l~i~~~rHPlle 306 (308)
T smart00533 244 ILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSG------ELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999999853 6999999999983
No 20
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-34 Score=287.68 Aligned_cols=183 Identities=29% Similarity=0.459 Sum_probs=163.5
Q ss_pred cccccceecCCc-eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHH
Q 007057 340 PVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 418 (620)
Q Consensus 340 ~v~vsl~i~~g~-~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg 418 (620)
+||+|+.+..+. ++++|+||||+|||||||++|++.+|+++|+++|+.. +.++++++++..++..+++....|+|+.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~e 95 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMID 95 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHHH
Confidence 679999998764 7999999999999999999999999999999999986 88999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC---CcEEEEEccChhHHhhcc--ccceeeCceEEE
Q 007057 419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATEF 493 (620)
Q Consensus 419 ~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~---~~~vli~TH~~~l~~~~~--~~~~~~~g~~~~ 493 (620)
+++++.++.++.+|+|+|||||++|||+.++.+++.++++++.+. +.++|++||+.++..... ....+.+.+|.+
T Consensus 96 l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~~ 175 (213)
T cd03281 96 LYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEV 175 (213)
T ss_pred HHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEEE
Confidence 999999999999999999999999999999999998899998764 248999999999775543 344566777765
Q ss_pred --e------cCccccchhhccCCCCCchHHHHHHHcCC
Q 007057 494 --S------LETLRPTYRILWGSTGDSNALNIAKSIGF 523 (620)
Q Consensus 494 --~------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (620)
+ .+.+.++|++..|.++.|+|+.+|+.+|+
T Consensus 176 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 176 LLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 3 26789999999999999999999999985
No 21
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.4e-34 Score=280.70 Aligned_cols=181 Identities=38% Similarity=0.656 Sum_probs=167.7
Q ss_pred EEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCC
Q 007057 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~ 432 (620)
+++||||||+||||+||++|+..+++|+|+++|+.. +.++++++++..++..+++.++.|+||+|+++++.++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999999999987 8999999999999999999999999999999999998888999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhccccceeeCceEEEec--CccccchhhccCCC
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGST 509 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~--~~l~~~y~l~~g~~ 509 (620)
+++|+|||++||||.++..+..++++++.+. +.++|++||+.++..+++....+.++++.++. +.+.++|++..|.+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 9999999999999999999998899988874 78999999999988898877778888887654 45889999999999
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHH
Q 007057 510 GDSNALNIAKSIGFDRKIIQRAQKL 534 (620)
Q Consensus 510 ~~s~a~~ia~~~g~~~~v~~~a~~~ 534 (620)
+.|+|+.+|+..|+|++++++|+++
T Consensus 160 ~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 160 GKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999874
No 22
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=7.7e-34 Score=280.82 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=168.1
Q ss_pred cccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 340 ~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
++++|+++..| ++++|+||||||||||||+|+...++++.|.++|+.. ..++++++++..++..+.+....|+|+.++
T Consensus 19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 57999999999 9999999999999999999987788999999999986 788999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEecC--c
Q 007057 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T 497 (620)
Q Consensus 420 krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~~--~ 497 (620)
+++..+...+.+|+++|+||||+||||..+..+...+++.+.+.+.++|++||+.++...+++...+.++++..+.+ .
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 99999999999999999999999999999999988788888877889999999999888888888888888887654 6
Q ss_pred cccchhhccCCCCCchHHHHHHHcCC
Q 007057 498 LRPTYRILWGSTGDSNALNIAKSIGF 523 (620)
Q Consensus 498 l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (620)
+.++|++..|.+..|+|+++|++.|+
T Consensus 177 ~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 177 LTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 88999999999999999999999885
No 23
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=4e-31 Score=266.56 Aligned_cols=167 Identities=20% Similarity=0.286 Sum_probs=144.2
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~ 383 (620)
.++++|++++|+++++ ++||++++| ++++|+||||||||||||++ |++.+ +|+.-.|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 4789999999998877 999999999 99999999999999999999 77754 4666679
Q ss_pred ccCCCCCCc----------------c-----------HHHHHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEE
Q 007057 384 LPAKNHPRL----------------P-----------WFDLILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLV 435 (620)
Q Consensus 384 vp~~~~~~l----------------~-----------~~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~Ll 435 (620)
+||...... + .+++.+..+|..+..++.+.+|||||+| +.++++++++|+++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 999752111 1 2345588899999999999999999996 66678999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
||||||++||+.....+.+ ++..+. ++|.|+|+|+||++++ ++||+++.+++|++...
T Consensus 161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999 566666 5689999999999966 89999999999998765
No 24
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=253.77 Aligned_cols=167 Identities=22% Similarity=0.287 Sum_probs=141.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~G~ 382 (620)
.|+++||+|+||+..| ++|+++.+| ++++|+||+||||||||||+ +|-.+ +.+.-.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4789999999999887 999999999 99999999999999999999 55432 112223
Q ss_pred cccCCC--CCCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~--~~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
+|+|.. ++.+++.+ .++.++|+.+..+.+++.|||||+ |++++++++.+|+++|+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 566654 23344443 357889999999999999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
|||||.|||+....+.. ++..|++.|.|.|+|||++.++ .++|+++.+..|.+...
T Consensus 161 DEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 161 DEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 99999999999999998 7777999999999999999977 78999999999977654
No 25
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=5.1e-31 Score=259.99 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=154.8
Q ss_pred cccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 340 ~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
+|.+++++..| ++++|+||||||||||||+|+...++++.|.++|+.. ..++ .+.++..+...+++..+.+.|..++
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence 57888999999 9999999999999999999988888999999999875 5666 6778888888888888888887777
Q ss_pred HHHHHHHHhcC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceE--EEec
Q 007057 420 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL 495 (620)
Q Consensus 420 krl~~i~~l~~--~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~--~~~~ 495 (620)
+++..++..+. +|+++|+|||++|||+.++..+..++++.+.+.+.++|++||++++....+....+.+.++ .++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD 171 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence 78888888878 9999999999999999999988877888887778899999999997766554444555433 3455
Q ss_pred CccccchhhccCCCCCchHHHHHHHcCC
Q 007057 496 ETLRPTYRILWGSTGDSNALNIAKSIGF 523 (620)
Q Consensus 496 ~~l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (620)
+.+.++|++..|.++.|+|+.+|++.|+
T Consensus 172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 172 NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 7788999999999999999999999885
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=263.65 Aligned_cols=165 Identities=23% Similarity=0.317 Sum_probs=138.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------H---hhCccccC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------S---KAGLYLPA 386 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------a---~~G~~vp~ 386 (620)
.++++|+++.|++..+ ++||++++| ++++|+||||||||||+|++ |++.+. . ....||||
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 5789999999996445 999999999 99999999999999999999 987641 0 12358999
Q ss_pred CCC--CCcc---------------------------HHHHHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEE
Q 007057 387 KNH--PRLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVL 436 (620)
Q Consensus 387 ~~~--~~l~---------------------------~~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlL 436 (620)
... ..+| .+++.+.++|+.+..++.+++|||||+| +.+|++++++|+|+|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 541 1111 2456788999999999999999999995 777899999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|||||+|+|+.....+.+ ++..+++.|+||++||||+. +..++|++..+ |.++.+
T Consensus 163 LDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~ 218 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIA 218 (254)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEe
Confidence 999999999999999999 77888888999999999998 77899988776 444444
No 27
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=291.13 Aligned_cols=266 Identities=18% Similarity=0.147 Sum_probs=185.0
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC---
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--- 389 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~--- 389 (620)
+.+++++||++.|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+-. ....|+|+...
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l 388 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL 388 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence 457899999999987665 999999999 99999999999999999999 7764311 01125555320
Q ss_pred -CCccH---------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHH
Q 007057 390 -PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA 451 (620)
Q Consensus 390 -~~l~~---------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~ 451 (620)
....+ +..++..+++. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~ 468 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 11111 12345667775 467899999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCccccchhhc-cCCCCCchHHHHH--H-HcCC-CH
Q 007057 452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLRPTYRIL-WGSTGDSNALNIA--K-SIGF-DR 525 (620)
Q Consensus 452 l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l~~~y~l~-~g~~~~s~a~~ia--~-~~g~-~~ 525 (620)
+...+.++ ++|||+||||++ +..+|++++.+.+|++....+++..+.... ............. . .... +.
T Consensus 469 l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (638)
T PRK10636 469 LTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQAR 544 (638)
T ss_pred HHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHHHhhhhhhhhhhccccccccccccccc
Confidence 99966554 469999999998 568999999999999875445544321110 0000000000000 0 0000 00
Q ss_pred HHHHHH-HHHHH-HhcchHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007057 526 KIIQRA-QKLVE-RLRPERQQHRKSELYQSLMEERRKLESQAR-----------TAASLHAEIMDLYREVYTFCIIISHA 592 (620)
Q Consensus 526 ~v~~~a-~~~~~-~~~~~~~~~~~e~~~~~le~~~~~le~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (620)
....+. .+... ....+.+.+.+|+.|+++|+++.+++++++ ++.++.++++++++++++.+++|+++
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 545 KDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001 11011 111122445789999999999999999884 36677888999999999999999999
Q ss_pred Hh
Q 007057 593 KR 594 (620)
Q Consensus 593 ~~ 594 (620)
+.
T Consensus 625 ~~ 626 (638)
T PRK10636 625 QE 626 (638)
T ss_pred HH
Confidence 85
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2.4e-30 Score=253.48 Aligned_cols=168 Identities=21% Similarity=0.296 Sum_probs=141.7
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------HH
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------------------~a 378 (620)
-.+++++|+++||++.| ++|+++.+| ++++|+||+|+|||||||+| |++.+ ..
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 36899999999999988 999999999 99999999999999999999 77653 12
Q ss_pred hhCccccCCC--CCCccHHHHH----------------------HHHcCCchh-hccccccchHHHH-HHHHHHHhcCCC
Q 007057 379 KAGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 379 ~~G~~vp~~~--~~~l~~~d~i----------------------~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
++| +++|.+ +..+++++|+ ++.+|+... .++.+|.|||||+ |+++|++++.+|
T Consensus 86 r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 86 RMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 233 455554 2345555553 355677777 8999999999999 799999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
+|+++||||+||||.....+.+ ++..+++ -+.|+++||||.+ +..+||++..+.+|++.+..
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 9999999999999999988888 5666665 4889999999987 77999999999999998863
No 29
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3e-29 Score=287.79 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=184.3
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------h--hCccccCCC---C
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKN---H 389 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~--~G~~vp~~~---~ 389 (620)
+.+++++||+++|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+-. . ...|+|+.. .
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~ 395 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD 395 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence 457899999999987666 999999999 99999999999999999999 7654311 0 012555542 1
Q ss_pred CCccHHH-------------------HHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 390 PRLPWFD-------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 390 ~~l~~~d-------------------~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
..+++++ .++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+..
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1122222 234455654 467889999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee-CceEEEecCccccchhhccCCCCCchHH-HHHHHcCCCH
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRPTYRILWGSTGDSNAL-NIAKSIGFDR 525 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~-~g~~~~~~~~l~~~y~l~~g~~~~s~a~-~ia~~~g~~~ 525 (620)
...|...+.++ ++|+|+||||.+ +..+|++++.+. +|.+....+++..+.............. .......-+.
T Consensus 476 ~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (635)
T PRK11147 476 LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQQQAQYLALKQPAVKKKEEAAAPK 551 (635)
T ss_pred HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHHHHHHHHhhhhhhccccccccccc
Confidence 98888854443 579999999998 558999999997 7999887777765322111000000000 0000000000
Q ss_pred HHHHHHHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007057 526 KIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQAR----------TAASLHAEIMDLYREVYTFCIIISHAK 593 (620)
Q Consensus 526 ~v~~~a~~~~~~~~~~~~~~~~e~~~~~le~~~~~le~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (620)
......+.........++.+.+|+.|+++|+++.+++++++ ++.++.++++++++++++++++|++++
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 552 AETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred cchhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000010000011122266789999999999999998883 467788899999999999999999987
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1e-28 Score=257.48 Aligned_cols=168 Identities=24% Similarity=0.331 Sum_probs=139.7
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcc
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~ 383 (620)
.+.++||+|.|+ ++.+ ++||++++| ++++|+||||||||||||++ |++.+- .+.-.|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 467899999999 5666 999999999 99999999999999999999 776531 112246
Q ss_pred ccCCCC--CCcc---------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~---------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ..++ .++.++..+|+.+..++.+++||+||| |+.++.+++.+|+++||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 777652 1111 244677888888766888999999999 5899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~-~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||+||||..+..+.+ ++..+.+.+ .|||++||.++ +..+||++..+.+|++.++.
T Consensus 163 Pt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 163 PTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999 566677766 79999999998 66789999999999998875
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=243.80 Aligned_cols=162 Identities=24% Similarity=0.331 Sum_probs=137.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh--------------hCccccCCC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK--------------AGLYLPAKN 388 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~--------------~G~~vp~~~ 388 (620)
.+.++++++.|++..+ ++|+++.+| ++++|+||+|||||||||+| |+..+-.- .-.|++|+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 4788999999998666 999999999 99999999999999999999 67654210 012555553
Q ss_pred CCCccH------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 389 HPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 389 ~~~l~~------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
.-+|| .+.+++.+|+.+..++.++.|||||+ |++++++++.+|+++|||||++.
T Consensus 82 -~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 82 -ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred -cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 33333 33567888999999999999999999 58999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCc
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENA 489 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g 489 (620)
||...+..+.+.+++-..+.+.|+++||||.+.+ .++|+++.+.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999988887778889999999999865 789999999884
No 32
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=243.10 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=142.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------HhhCccccCC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAK 387 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------a~~G~~vp~~ 387 (620)
.+++++|+|+||++.+ ++||++++| ++++++|||||||||++|+| |++.+- .....|.|.+
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 3689999999999776 999999999 99999999999999999999 777541 1122366655
Q ss_pred C--CCCccHHH---------------------HHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCC
Q 007057 388 N--HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 388 ~--~~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~g 443 (620)
. +..+.+.| ..+.+++......+++.+||-|++| +.++.+++++|.|+|||||++|
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 3 23344433 3467777888889999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
|||...+.|-+++.+ +++.|+|||++||.++ +..+||++..+..|+.+++.
T Consensus 161 LDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 161 LDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred CChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 999999999997666 7888999999999998 78999999999999888764
No 33
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.1e-28 Score=241.17 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=131.6
Q ss_pred EEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHHh-hhHH-----------------------
Q 007057 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASL----------------------- 376 (620)
Q Consensus 327 l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iG-li~~----------------------- 376 (620)
++++||+|.|+.. .+ ++||+|++| ++++|+||+||||||||+++| +..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 5688999999642 23 999999999 999999999999999999994 4332
Q ss_pred HHhhCccccCCCC--CCccHHH---------------------HHHHHcCCchhhc-cccccchHHHH-HHHHHHHhcCC
Q 007057 377 MSKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 377 ~a~~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~-~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
..+.-.|++|... +.++..+ .++..+|+.+... ++++.|||||+ |+++|++++.+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 1222346666541 2223333 3455668887776 88999999999 58899999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceE
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~ 491 (620)
|++||.||||.+||+..+..+...+.+.-.+.|.|+|+||||..++.+||+.+.+.+|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999995444334558899999999999999999999999983
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.5e-29 Score=235.83 Aligned_cols=166 Identities=19% Similarity=0.287 Sum_probs=133.8
Q ss_pred eEEEeeeeeecCCcc--c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCc
Q 007057 326 EMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~--v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~ 382 (620)
++++.+++|+|++.+ + +++|++..| ++++|+|||||||||+||+| +++.+ ..++|.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 367899999999854 2 999999999 99999999999999999999 34332 112221
Q ss_pred cccCC-C-CCCcc------HH---------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 383 YLPAK-N-HPRLP------WF---------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 383 ~vp~~-~-~~~l~------~~---------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
++.+ + +.+++ +| +++...+++.+.+++.+..||-||| ++.++++++++|++++||
T Consensus 80 -l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 80 -LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred -ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 1110 0 01111 11 2344567788899999999999999 599999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+|||......+.+ ++..++..|.+||++||.++ +..+||+++.+.+|++++.
T Consensus 159 EP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 159 EPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred CCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999999999999998 67778888999999999997 7789999999999999875
No 35
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.4e-28 Score=237.07 Aligned_cols=168 Identities=23% Similarity=0.312 Sum_probs=139.6
Q ss_pred eEEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------HH
Q 007057 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (620)
Q Consensus 326 ~l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------------------~a 378 (620)
+|+++||++.| +++.. +|||+|++| ++++|+||+|||||||||++ |++.+ .+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 68999999999 66555 999999999 99999999999999999999 76542 34
Q ss_pred hhCccccCCCC--CCccHHH-----------------------------HHHHHcCCchhhccccccchHHHH-HHHHHH
Q 007057 379 KAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d-----------------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
++| +++|... .++.++. ..++++|+.+...+..++|||||+ |+++++
T Consensus 82 ~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 455 4555431 1111211 246788999999999999999999 688899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEec
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~~ 495 (620)
+++++|+++|.|||++.|||.....+++.+.+.-.+.|.|+|++-|+.+++ ++|++++.+.+|++.||.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 999999999999999999999999999955554445688999999999966 899999999999999984
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=5.4e-28 Score=256.98 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=138.8
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~ 383 (620)
.+++++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 47999999999998655 999999999 99999999999999999999 776431 112246
Q ss_pred ccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ..+++. +.++..+++.+..++.+++||+||+ ++.++++++.+|+++||||
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE 198 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 676541 112222 2345666777778899999999999 5889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||+||||..+..+...+ ..+.+.|.|+|++||+++ +..+||++..+.+|++.++.
T Consensus 199 Pt~gLD~~~r~~l~~~l-~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 199 PTTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999954 456666899999999998 56899999999999998764
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=5.6e-28 Score=253.73 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=138.6
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~ 383 (620)
..++++||+|.|++..+ ++||++.+| ++++|+||||||||||+|+| |++.+- .+.-.|
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 36899999999987655 999999999 99999999999999999999 776431 122346
Q ss_pred ccCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ..+++.+ .++..+++.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 777642 1122222 345566777778899999999999 5899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||+||||..+..+.. ++..+.+.|.|+|++||+++ +..+||++..+.+|++....
T Consensus 165 Pt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 165 PTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999 45556766889999999998 56899999999999997763
No 38
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=4.7e-28 Score=238.58 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=136.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~ 383 (620)
+++++||||.|+++.+ ++|++|++| ++++++||+||||||+||+| +|+.+ +.+...|
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 3689999999998766 999999999 99999999999999999999 56532 2222223
Q ss_pred ccCCC--CCCccH---------------------HHHHHHHcCCc--hhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 384 LPAKN--HPRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 384 vp~~~--~~~l~~---------------------~d~i~~~ig~~--~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|-|.- ++.+++ .+.++..+|++ +..+++++.|||||+ |+..+++++.+|+++||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 33321 122222 33457777875 578999999999999 69999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
|||++.|||..+..+-+.+.+--.+.+.|+|+||||++.+ .++|++..+..|++.-.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence 9999999999999999966664445689999999999865 89999999999988643
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-27 Score=238.22 Aligned_cols=165 Identities=21% Similarity=0.199 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~ 386 (620)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|++ |++.+- .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 367899999987655 999999999 99999999999999999999 776431 111235666
Q ss_pred CCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 387 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 387 ~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
... ...++. .+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 531 111211 2345667777778899999999999 5888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|||+.....+.+.+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 ~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 160 ALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cCCHHHHHHHHHHHH-HHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999554 4554 4789999999998 568999999999998754
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=2.5e-27 Score=248.66 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=136.7
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~ 383 (620)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 36889999999987655 999999999 99999999999999999999 776430 122346
Q ss_pred ccCCCCC--CccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNHP--RLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~~--~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+.... .+++.+ .++..+++.+..++.+++|||||+ |++++++++.+|+++||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6765411 122222 345566777778899999999999 5889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+..+..+...+ ..+.+.|.|+|++||+++ +..+|++++.+.+|++...
T Consensus 162 Pt~gLD~~~~~~l~~~l-~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 162 PTTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CCcCCCHHHHHHHHHHH-HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999954 456666889999999998 5589999999999998765
No 41
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=2.4e-27 Score=230.19 Aligned_cols=155 Identities=24% Similarity=0.334 Sum_probs=130.7
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC----------------
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP---------------- 390 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~---------------- 390 (620)
++||++.|++..+ ++||++.+| ++++|+||||||||||++++ +|...|.+|..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA 72 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 6789999987555 999999999 99999999999999999999 66555555421
Q ss_pred -CccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEE
Q 007057 391 -RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA 467 (620)
Q Consensus 391 -~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~v 467 (620)
.+.++.+++..+|+.+..++.+.+||+||+ +++++++++.+|+++||||||+|||+.....+...+ ..+.++ +.|+
T Consensus 73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l-~~~~~~~~~ti 151 (180)
T cd03214 73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL-RRLARERGKTV 151 (180)
T ss_pred HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhcCCEE
Confidence 233444567888998888999999999999 588999999999999999999999999999999954 455554 7899
Q ss_pred EEEccChhH-HhhccccceeeCceEEE
Q 007057 468 VVTTHYADL-SCLKDKDTRFENAATEF 493 (620)
Q Consensus 468 li~TH~~~l-~~~~~~~~~~~~g~~~~ 493 (620)
|++||+.+. ..+||+++.+.+|++..
T Consensus 152 ii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 152 VMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999985 58999999999998753
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-27 Score=237.07 Aligned_cols=166 Identities=23% Similarity=0.295 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.|+|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 468899999987666 999999999 99999999999999999999 775431 11123666
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... ..+++ ++.++..+|+.+..++++++|||||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6541 11121 12345667777788899999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+.....+...+. .+.+. +.++|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~LD~~~~~~l~~~l~-~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 160 IGLDPQTRAHVWEYIE-KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred cCCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999554 45544 789999999998 5678999999999998654
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.7e-27 Score=235.84 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=129.9
Q ss_pred EeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------HhhCccccCCC
Q 007057 329 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN 388 (620)
Q Consensus 329 ~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------a~~G~~vp~~~ 388 (620)
++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999976 555 999999999 99999999999999999999 776431 11223666653
Q ss_pred C---CCccH-----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 389 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 389 ~---~~l~~-----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
. ...++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 1 11122 23456677888888999999999999 588899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceE
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~ 491 (620)
....+.. ++..+.+.+.|+|++||+.+ +..+||+++.+.+|++
T Consensus 161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999998 45556556889999999998 5578999999998875
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=2.2e-27 Score=236.73 Aligned_cols=162 Identities=15% Similarity=0.237 Sum_probs=129.9
Q ss_pred EEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHh
Q 007057 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK 379 (620)
Q Consensus 327 l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~ 379 (620)
++++|++++|++ +.+ ++||++.+| ++++|+||||||||||||++ |+..+ ..+
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 678999999964 334 999999999 99999999999999999999 77542 012
Q ss_pred hCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 380 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 380 ~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
...|+|+... ..+++. .+++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2346676541 111222 2345667777788899999999999 589999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
||||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+||+++.+.+|+
T Consensus 161 llDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999995 4556666889999999998 557899999988875
No 45
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=3.7e-27 Score=241.62 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=137.4
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------HhhCccccC
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPA 386 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~~G~~vp~ 386 (620)
+..|+++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 357899999999987655 999999999 99999999999999999999 776431 111236666
Q ss_pred CCC--CCccH---------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 387 KNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 387 ~~~--~~l~~---------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
... ...++ +.+++..+|+.+..++.+++|||||+ +++++++++.+|+++||||||+|||+..
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 531 11122 22356677888888999999999999 5889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
...+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 169 ~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999555433445789999999998 5689999999999998764
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.4e-27 Score=236.17 Aligned_cols=167 Identities=21% Similarity=0.258 Sum_probs=131.8
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------HhhCcccc
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~~G~~vp 385 (620)
++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 367899999976 445 999999999 99999999999999999999 776431 11123566
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... ..+++. +.++..+|+.+..++.++.|||||+ +++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5531 111221 2345667777778899999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee--CceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~--~g~~~~~ 494 (620)
+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 9999999999999555433445789999999998 668999999998 6887543
No 47
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=2.9e-27 Score=235.02 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=127.0
Q ss_pred EeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCccc
Q 007057 329 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (620)
Q Consensus 329 ~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~v 384 (620)
++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999976 555 999999999 99999999999999999999 776431 1223466
Q ss_pred cCCCC---CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 385 PAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 385 p~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
|+... ...++. ++++..+|+.+.+++.++.|||||+ |++++++++.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 66531 112222 2245567777778899999999999 5899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCc
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g 489 (620)
||+|||+.....+...+. .+.+.+.++|++||+.+ +..+|++++.+.+|
T Consensus 161 Pt~~LD~~~~~~~~~~l~-~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999554 45555889999999998 55789999888776
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.2e-27 Score=237.89 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=133.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------HhhC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------------a~~G 381 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 367899999987655 999999999 99999999999999999999 776431 1112
Q ss_pred ccccCCCC--CCccHH----------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.|+|+... ..+++. .+++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 36666531 111222 2345566777777899999999999 5888899999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+...+ ..+.+ .+.|+|++||+++ +..+||+++.+.+|++...
T Consensus 160 lDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred ecCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999954 44554 4789999999998 5678999999999998654
No 49
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=4.8e-27 Score=233.77 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=131.6
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~ 386 (620)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 367899999987665 999999999 99999999999999999999 776431 011235555
Q ss_pred CCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 387 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 387 ~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
... ...++. +.++..+|+.+..++.+++|||||+ +++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 431 111211 2345667777788999999999999 5889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 160 ~LD~~~~~~l~~~l~-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 160 NLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred cCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999554 4554 4789999999997 568899999999998754
No 50
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=4.5e-27 Score=233.22 Aligned_cols=165 Identities=24% Similarity=0.293 Sum_probs=133.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~ 386 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 368899999977655 999999999 99999999999999999999 775421 112336676
Q ss_pred CCC--CCccH-----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 387 KNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 387 ~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
... ...++ ++.++..+++.+..++.+.+|||||+ +++++++++.+|+++||||||+|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 541 11222 22345667777788899999999999 58899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999998 45555656789999999998 457899999999998753
No 51
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=3.3e-27 Score=235.77 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=129.2
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
++++||+++|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 367899999976 445 999999999 99999999999999999999 776430
Q ss_pred -HhhCccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 378 -SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
.+...|+|+... ..+++ ++.++..+|+.+..++.+.+|||||+ +++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 112345665531 11111 23456667787778899999999999 589999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCce
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
+++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+...+||+++.+.+|+
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHH-HHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 9999999999999999999999554 4554 5789999999998556999999988875
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.1e-27 Score=233.12 Aligned_cols=165 Identities=20% Similarity=0.290 Sum_probs=131.7
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------HhhCccccCCC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 388 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------a~~G~~vp~~~ 388 (620)
++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||+++ |+..+- .....|+|+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 367899999987655 999999999 99999999999999999999 775431 11123566653
Q ss_pred C--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 389 H--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 389 ~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
. ..+++. ++++..+|+....++.+.+|||||+ +++++++++.+|+++||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 1 111221 2345566777778889999999999 588889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|+.....+... ++.+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 D~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999995 4555656789999999998 557899999999998754
No 53
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-27 Score=237.48 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=136.7
Q ss_pred eEEEeeeeeecCCc-cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhC
Q 007057 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G 381 (620)
.+.++++++.|++. .+ ++|+++.+| +.++|+||||||||||++++ |++.+- .+.-
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 56789999999765 44 999999999 99999999999999999999 665431 1112
Q ss_pred ccccCCCCCCc---c---------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKNHPRL---P---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~~~~l---~---------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.+|+|.+..++ + .++.++..+|+.+..++.+.+|||||+ |+++|..++.+|+++|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 24444431111 1 133567788999999999999999999 5888899999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
|||||+||||..+..+.. ++..+... |.|+|++|||++ +..+|++++.+.+|++..+.
T Consensus 162 LDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 162 LDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred EcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 999999999999999999 56667665 679999999998 66889999999999986653
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=6e-27 Score=233.88 Aligned_cols=165 Identities=22% Similarity=0.315 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhC
Q 007057 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G 381 (620)
++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||+| |+..+- .+..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 6789999999865 45 999999999 99999999999999999999 776431 1122
Q ss_pred ccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.|+|+... ..+++ +++++..+|+.+.+++.+.+|||||+ +++++++++.+|+++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 36666531 11122 12345677887888999999999999 58999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 161 DEPTTGLDVMATRALREFI-RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999955 445666889999999997 568999999999998754
No 55
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=3.7e-27 Score=223.19 Aligned_cols=168 Identities=16% Similarity=0.221 Sum_probs=136.7
Q ss_pred eEEEeeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH----------------------HHHh
Q 007057 326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----------------------LMSK 379 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~----------------------~~a~ 379 (620)
+|+++||+|.|++.+ . ++||++++| +++-|+||+|||||||||+| +... ++.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 368899999997655 3 999999999 99999999999999999999 3322 1222
Q ss_pred hCccccCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 380 AGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 380 ~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
....|+|+.. ...+++| .++..+|+.+..+.-+++|||||+ |+++|++++++|.++
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 2234555431 1112333 357788999999999999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEec
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~~ 495 (620)
|.||||.+|||.....++. +++.++..|.||+++|||.++ ..+..+...+++|.+..+.
T Consensus 160 lADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999 778899999999999999995 4677778889999887654
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=6.7e-27 Score=235.76 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------H-hhCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a-~~G~~ 383 (620)
++++||++.|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+- . +...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 367899999987655 999999999 99999999999999999999 776431 1 11235
Q ss_pred ccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ..+++. +.++..+|+.+..++.+++||+||+ +++++++++.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 666531 111221 2345566777778899999999999 5889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999999 55556666889999999997 7789999999999988644
No 57
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=8.1e-28 Score=229.25 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=145.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC-
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG- 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G- 381 (620)
..+.++|+.|+|+.+.| ++|+++.+| ++++++|||||||||.+-++ |++.+ .|+.|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 35788999999998877 999999999 99999999999999999999 88864 46666
Q ss_pred ccccCCCC--CCccHH-----------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 382 LYLPAKNH--PRLPWF-----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 382 ~~vp~~~~--~~l~~~-----------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.|+||+.+ -.+++. +.++..+++....+++..+||||++ |+-++++++.+|+++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 48899862 223332 3456677777788899999999999 588889999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh-hHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~-~l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||++|.||.....+-. ++.+|+++|.-|++|-|+- +...+||+.+.+..|++.+.
T Consensus 162 LLDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred EecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 9999999999999999988 8889999999999999996 47799999999999999775
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=6.9e-27 Score=236.24 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 357899999987655 999999999 99999999999999999999 776431 111236
Q ss_pred ccCCCC--CCccH-------------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhc
Q 007057 384 LPAKNH--PRLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 384 vp~~~~--~~l~~-------------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+|+... ..+++ +.+++..+|+.+..++++++|||||+ +++++++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 666531 11111 12345566777778899999999999 588999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELI-RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 999999999999999999999999954 445556889999999998 4588999999999988654
No 59
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=1.1e-26 Score=235.94 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=132.4
Q ss_pred EEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHhh
Q 007057 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (620)
Q Consensus 327 l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~~ 380 (620)
++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+ +.+.
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 57899999997 5555 999999999 99999999999999999999 77642 0122
Q ss_pred CccccCCCC--CCccHH-----------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHh
Q 007057 381 GLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~-----------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..|+|+... ..+++. .+++..+|+....++.+.+|||||+ |+++++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 346666531 111211 2345566777778899999999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYL-KRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999854 44544 47899999999984 589999999999988643
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=7.2e-27 Score=232.65 Aligned_cols=162 Identities=18% Similarity=0.251 Sum_probs=128.6
Q ss_pred EEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHhh
Q 007057 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (620)
Q Consensus 327 l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~~ 380 (620)
++++|+++.| ++..+ ++||++.+| ++++|+||||||||||+|+| |+..+ +.+.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6789999999 44444 999999999 99999999999999999999 77532 1112
Q ss_pred CccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
..|+|+... ...++. .+++..+|+.+..++.+.+|||||+ |++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 346666531 111221 2345566777778889999999999 5899999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
|||||+|||+..+..+...+. .+.+.+.|+|++||+.+ +..+||++..+.+|+
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999554 45656889999999998 567899998887763
No 61
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.6e-27 Score=231.68 Aligned_cols=166 Identities=17% Similarity=0.256 Sum_probs=131.8
Q ss_pred EEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCCC
Q 007057 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKN 388 (620)
Q Consensus 327 l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~~ 388 (620)
+.++|++++|++..+++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+..
T Consensus 1 i~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 1 VRLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred CEEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 367899999987656999999999 99999999999999999999 776431 01123556553
Q ss_pred C--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 389 H--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 389 ~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
. ..+++ +..++..+|+.+..++.+.+||+||+ +++++++++.+|+++||||||+||
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1 01111 22345566777778899999999999 588899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|+.....+...+.+...+.+.|+|++||+.+ +..+||+++.+.+|++..
T Consensus 160 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999555433345889999999998 558899999999998754
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=7e-27 Score=252.76 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=137.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~ 383 (620)
.|+++||+++|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+ +++.-.+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 5789999999988766 999999999 99999999999999999999 77643 1122236
Q ss_pred ccCCCCC--CccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 384 vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
+|+.... .+++ ++.++..+|+.+..++++.+|||||+ |+.++++++++|+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6665311 1111 23456677888888999999999999 588889999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+..+..+.. ++..+.+.+.|+|++||++++. .+|++++.+.+|++..+
T Consensus 162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 5556666688999999999854 89999999999998764
No 63
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=234.14 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=133.7
Q ss_pred EEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
++++|++++|+++ .+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 6789999999865 45 999999999 99999999999999999999 776431
Q ss_pred HhhCccccCCCCC--CccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 378 SKAGLYLPAKNHP--RLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 378 a~~G~~vp~~~~~--~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.+...|+|+.... .+++.+ +++..+|+.+..++.+++||+||+ +++++++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1223466666421 122222 345566777778899999999999 5889999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~-~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRD-INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999995544 554 4789999999998 4688999999999998754
No 64
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=240.27 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhCc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G~ 382 (620)
++++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 678999999987655 999999999 99999999999999999999 776421 11234
Q ss_pred cccCCCC---CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ....+. +.++..+|+.+..++.+++|||||+ |++++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6676531 001111 1245566777777889999999999 58889999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 DEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAI-IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred eCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999994 4456656789999999998 4588999999999998765
No 65
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=242.70 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=135.9
Q ss_pred eEEEeeeeeecCCc-cc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~-~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+|.||+. .+ ++|+++.+| ++++|+||||||||||||+| ||..+- .+--.+|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 57899999999987 56 999999999 99999999999999999999 665431 11122445
Q ss_pred CCC--CCCccHHHH---------------------HHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKN--HPRLPWFDL---------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~--~~~l~~~d~---------------------i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
|+. ++.++++++ +...+++.+.+++.+++|||||+ |++++++++.+|+++|||||.
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 443 234455544 45667888999999999999999 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
++||..-+..+..-+.+ +++ .+.|+|+||||.. ...++|++.++.+|.+.-
T Consensus 162 SnLDa~lR~~mr~ei~~-lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 162 SNLDAKLRVLMRSEIKK-LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hHhhHHHHHHHHHHHHH-HHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999885555 554 5889999999986 558999999999888754
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=1e-26 Score=243.79 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=135.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-.|+|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 678999999987666 999999999 99999999999999999999 775431 12234667
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... ..+++ +++++..+|+.+..++.++.||+||+ |+.++++++.+|+++||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6541 11222 23345667888888999999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||..+..+...+ ..+.+ +.|+|++||+++ +..+|+++..+.+|++...
T Consensus 162 ~gLD~~~~~~l~~~l-~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 162 TGLDPNQLVEIRNVI-KNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred ccCCHHHHHHHHHHH-HHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999954 55655 689999999998 6789999999999999865
No 67
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=237.04 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=131.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------------hhCccccCCCC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH 389 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------------~~G~~vp~~~~ 389 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+-. ....|+|+...
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 678999999987655 999999999 99999999999999999999 7764310 01135565531
Q ss_pred --CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 007057 390 --PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (620)
Q Consensus 390 --~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD 445 (620)
...++ +..++..+|+.+..++.+++|||||+ +++++++++.+|+++||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11111 22345667777777899999999999 5889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee--CceEEEe
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS 494 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~--~g~~~~~ 494 (620)
+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999554432445789999999998 568999999998 4877554
No 68
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=1.6e-26 Score=233.89 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=133.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++|++++|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+- .+...|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 678999999987665 999999999 99999999999999999999 776431 01223666
Q ss_pred CCCCC--CccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+.... ..++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65311 11221 2345566777778899999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+.....+...+. .+. +.+.|+|++||+.+....|++++.+.+|++...
T Consensus 161 ~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 161 VGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred cCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 9999999999999554 455 457899999999985556999999999988654
No 69
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=233.23 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=132.9
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~ 386 (620)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 678999999987655 999999999 99999999999999999999 776431 011235565
Q ss_pred CCC--CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 387 KNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 387 ~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
... ..+++ ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++|||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 531 01111 12345566777777889999999999 588999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 EP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 162 EPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred CCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999994 444554 4789999999998 5689999999999988654
No 70
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.9e-26 Score=233.68 Aligned_cols=166 Identities=20% Similarity=0.268 Sum_probs=131.6
Q ss_pred EEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------Hhh
Q 007057 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (620)
Q Consensus 327 l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------------a~~ 380 (620)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 367899999976 555 999999999 99999999999999999999 776420 112
Q ss_pred CccccCCCC--CCccHH-----------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHh
Q 007057 381 GLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~-----------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..|+|+... ..+++. .+++..+|+....++.+.+|||||+ |+++++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 346666531 111211 2234556777777889999999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+... +..+.+ .|.|+|++||+++. ..+||+++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999994 445554 48899999999984 569999999999998654
No 71
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1.1e-26 Score=231.24 Aligned_cols=159 Identities=24% Similarity=0.330 Sum_probs=127.4
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------HhhCccccCCCCC-
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP- 390 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~~G~~vp~~~~~- 390 (620)
++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+....
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 5789999987555 999999999 99999999999999999999 776431 1223466665311
Q ss_pred ---CccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 391 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 391 ---~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
..++ +.+++..+|+.+..++.+++|||||+ +++++++++.+|+++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1111 12345566777778899999999999 588899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCc
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g 489 (620)
+|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.++
T Consensus 161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 99999999999995554 5556789999999998 55889999988775
No 72
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=8.3e-27 Score=244.97 Aligned_cols=168 Identities=18% Similarity=0.237 Sum_probs=137.9
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~v 384 (620)
..++++||+|.||+..+ ++|++|.+| ++++|+|||||||||+||+| |+..+- .+--.+|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 46889999999997665 999999999 99999999999999999999 554331 1111234
Q ss_pred cCCC--CCCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 385 PAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 385 p~~~--~~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+. ++.+++++ +++..+++.+..++.++.|||||+ |++++++++.+|.++||||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 4432 23344444 346677888899999999999999 6999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEE
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEF 493 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~ 493 (620)
|.++||..-+..+...+.+...+.|.|+|+||||.+.+ .++|++.+|.+|+++-
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 99999999999999977776667799999999999855 8999999999998753
No 73
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=1.3e-26 Score=230.54 Aligned_cols=162 Identities=23% Similarity=0.270 Sum_probs=129.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhCc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G~ 382 (620)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 367899999987655 999999999 99999999999999999999 775420 11234
Q ss_pred cccCCCC--CCccHH----------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ..+++. ..++..+|+...+++.+.+||+||+ +++++++++.+|+++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6666531 112222 2345566777778899999999999 58999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 160 DEP~~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPELVGEVLDV-MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred eCCccCCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999994 5556656789999999998 558999999888775
No 74
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.4e-27 Score=231.13 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=135.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-------------- 389 (620)
.+++++|+|+||+-.+ ++||++.+| ++++|+|||||||||++++| .|.|.|..|.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHH
Confidence 4678999999998665 999999999 99999999999999999999 6666666551
Q ss_pred -----------------CCccHHHH---------------------------------HHHHcCCchhhccccccchHHH
Q 007057 390 -----------------PRLPWFDL---------------------------------ILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 390 -----------------~~l~~~d~---------------------------------i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
..++++++ ++..+|+.+..+...++||+|+
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 22233333 3455788888999999999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+ ++.++++++++|.|||||||.+|++|.+...+.. ++..+.+ .|.|++++.||+. +..+||+++++..|++..+
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 8 5888899999999999999999999999999999 6666776 4689999999999 6699999999999988765
No 75
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=5.8e-27 Score=224.01 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=120.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~ 404 (620)
++++|++++|++.++ ++||++.+| ++++|+||||+||||||+++ +|...|..|...+...+ + .....
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~-~-~~~~~ 69 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKE-V-SFASP 69 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEE-C-CcCCH
Confidence 367899999987666 999999999 99999999999999999999 77777776632221100 0 00000
Q ss_pred chhhcc---ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhh
Q 007057 405 HQSLEQ---NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCL 479 (620)
Q Consensus 405 ~~~~~~---~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~ 479 (620)
.+...+ .+..||+||+ +++++++++.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+
T Consensus 70 ~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 70 RDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI-RRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred HHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHh
Confidence 001111 1223999999 588999999999999999999999999999999954 445666889999999998 6688
Q ss_pred ccccceeeCceEEE
Q 007057 480 KDKDTRFENAATEF 493 (620)
Q Consensus 480 ~~~~~~~~~g~~~~ 493 (620)
|++++.+.+|++.+
T Consensus 149 ~d~~~~l~~g~i~~ 162 (163)
T cd03216 149 ADRVTVLRDGRVVG 162 (163)
T ss_pred CCEEEEEECCEEEe
Confidence 99999999998753
No 76
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=2.4e-26 Score=234.35 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=133.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+|+| |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 4789999999987655 999999999 99999999999999999999 775320
Q ss_pred --HhhCccccCCCC--CCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 378 --SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
.+...|+|+... ...++.+ .++..+|+.+..++.+++|||||+ |++++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 112246666531 1112222 234556777677889999999999 5889999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|+++||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999 45556666889999999998 5589999999999988654
No 77
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.8e-26 Score=231.32 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=131.5
Q ss_pred EEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHhh
Q 007057 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (620)
Q Consensus 327 l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~~ 380 (620)
++++|+++.| ++..+ ++||++.+| ++++|+||||||||||+|+| |+..+ ..+.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6789999999 55555 999999999 99999999999999999999 77542 0112
Q ss_pred CccccCCCCC--CccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
..|+|+.... ..++. +.++..+|+.+..++.+++||+||+ +++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3466665421 11211 2345667777778899999999999 5889999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
|||||+|||+.....+.+.+ ..+.+.+.++|++||+.+ +..+|++++.+.+|++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLF-EEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999944 455656789999999998 55789999999998864
No 78
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=2.2e-26 Score=230.31 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=129.5
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------H-----------
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------M----------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------~----------- 377 (620)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+ +
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 678999999964 234 999999999 99999999999999999999 77532 0
Q ss_pred H-hhCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 378 S-KAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 378 a-~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
. +...|+|+... ..+++. .+++..+|+.+..++.+++|||||+ +++++++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 1 22346776631 112222 2345566777778899999999999 588899999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceE
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~ 491 (620)
+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+....+|+++.+.+|++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 999999999999999999999954 44554 47899999999986666899989988875
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-26 Score=237.91 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=135.5
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
.++++||++.|+ +..+ ++||++.+| ++++|+||||||||||++++ |+..+. .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 578999999995 4444 999999999 99999999999999999999 776431 11224
Q ss_pred cccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ...++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666531 11121 12345666887788999999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEec
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~~ 495 (620)
||||+|||+.....+... +..+++.|.|+|++||+++. ..+||+++.+.+|++..+.
T Consensus 163 DEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred ECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999994 44566568899999999985 5899999999999987653
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=1.9e-26 Score=230.76 Aligned_cols=166 Identities=23% Similarity=0.275 Sum_probs=131.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
++++||++.|++..+ ++||++.+| ++++|+|||||||||||+++ |++.+- .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 467899999987655 999999999 99999999999999999999 776420 111346
Q ss_pred ccCCCC--CCccHHH-------------------HHHHHc-CCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 384 LPAKNH--PRLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 384 vp~~~~--~~l~~~d-------------------~i~~~i-g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
+|+... ..+++.+ .++..+ ++.+..++++.+|||||+ +++++++++.+|+++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 666531 1112222 233444 355667889999999999 58889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 t~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 160 SEGLAPKIVEEIFEAI-RELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred cccCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 9999999999999955 455656789999999998 5689999999999988654
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=1.5e-26 Score=230.32 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=128.3
Q ss_pred EEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHhh
Q 007057 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (620)
Q Consensus 327 l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~~ 380 (620)
++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||++ |+..+ ..+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 357899999964 344 999999999 99999999999999999999 77532 0112
Q ss_pred CccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
..|+|+... ..+++. +.++..+|+.+..++.+.+|||||+ +++++++++.+|+++|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 346666531 111221 2345566777778889999999999 5889999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
|||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 160 lDEPt~~LD~~~~~~~~~~l-~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLL-KKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999955 445656889999999998 457899999888875
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.9e-26 Score=232.50 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=133.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhCc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G~ 382 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+- .+...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 678999999987655 999999999 99999999999999999999 776421 11124
Q ss_pred cccCCCC--CCccH----------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ..+++ +.+++..+|+.+..++.+++||+||+ +++++++++.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5665531 11111 12345667777778899999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+... +..+.+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 161 DEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 161 DEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred cCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999994 55566668899999999984 578999999999998754
No 83
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=2.7e-26 Score=236.84 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------Hhh
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------------a~~ 380 (620)
+++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 6889999999987655 999999999 99999999999999999999 776420 112
Q ss_pred CccccCCCC--CCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 381 GLYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
..|+|+... ..+++.+ .++..+|+.+..++.+++|||||+ +++++++++.+|+++
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 346666531 1112222 234566777778889999999999 588889999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+.+.+. .+.+ .|.|+|++||+++ +..+|++++.+.+|++...
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLIS-ELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHH-HHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999999554 4554 4789999999987 6688999999999998754
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=2.8e-26 Score=229.35 Aligned_cols=165 Identities=23% Similarity=0.311 Sum_probs=131.4
Q ss_pred EEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcc
Q 007057 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~ 383 (620)
|+++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 467899999976 555 999999999 99999999999999999999 776431 111235
Q ss_pred ccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ...++ +++++..+|+.+..++.+++||+||+ +++++++++.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 665431 01111 12345667777778899999999999 5888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+... +..+.+ +.|+|++||+++. ..+|++++.+.+|++...
T Consensus 160 P~~~LD~~~~~~l~~~-l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 160 PTSGLDPASRRAIWDL-ILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCHHHHHHHHHH-HHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999994 444555 5899999999984 578999999999988754
No 85
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-26 Score=233.63 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=134.3
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhC-
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG- 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G- 381 (620)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+- .+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 36899999999987655 999999999 99999999999999999999 776431 1122
Q ss_pred ccccCCCC--CCccHH------------------------------------HHHHHHcCCchhhccccccchHHHH-HH
Q 007057 382 LYLPAKNH--PRLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI 422 (620)
Q Consensus 382 ~~vp~~~~--~~l~~~------------------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl 422 (620)
.|+|+... ..+++. ..++..+|+.+..++++.+|||||+ |+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 24566531 111221 1234456777778899999999999 58
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+++++++.+|+++||||||+|||+.....+... +..+++. +.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDEL-IAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 999999999999999999999999999999994 4455554 7899999999984 588999999999988654
No 86
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=249.40 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=131.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-----h---hCccccCCCCCC--c
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----K---AGLYLPAKNHPR--L 392 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-----~---~G~~vp~~~~~~--l 392 (620)
.|.+.|++++||++.+ ++++++.+| +.++|+|+||+|||||||+| |...+-. . .-.|++|..... .
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 5789999999998887 999999999 99999999999999999999 4432210 0 011333332111 1
Q ss_pred cHHH---------------------------------------------------HHHHHcCCchhhccccccchHHHH-
Q 007057 393 PWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHIS- 420 (620)
Q Consensus 393 ~~~d---------------------------------------------------~i~~~ig~~~~~~~~~s~lSgg~k- 420 (620)
++++ .++..+|..+. ++++++||||++
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence 1111 12333455555 899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCccc
Q 007057 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLR 499 (620)
Q Consensus 421 rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l~ 499 (620)
|++++.++..+|++|||||||||||..+..-|.. +|.+..+|+|+||||++ +..+|++++.+.+|++..+.+++.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLED----YLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 7999999999999999999999999977666555 55555569999999999 679999999999998888777766
Q ss_pred cchh
Q 007057 500 PTYR 503 (620)
Q Consensus 500 ~~y~ 503 (620)
.+++
T Consensus 237 ~~~~ 240 (530)
T COG0488 237 SYLE 240 (530)
T ss_pred HHHH
Confidence 5443
No 87
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-26 Score=244.06 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=136.1
Q ss_pred eEEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccc
Q 007057 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (620)
Q Consensus 326 ~l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~v 384 (620)
.++++||+++| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 47899999999 66555 999999999 99999999999999999999 775431 1122366
Q ss_pred cCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 385 p~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
||... +.+++. ++++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66531 122222 2456677888889999999999999 59999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|++||+..+..+...+.+...+.+.|+|+||||.+ ...+||++..+.+|++...
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999655433345889999999987 5689999999999998754
No 88
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-26 Score=233.60 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~ 383 (620)
+++++|++++|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+ ..+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 3678999999987665 999999999 99999999999999999999 77542 0112346
Q ss_pred ccCCCCC--CccHH-------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 384 LPAKNHP--RLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 384 vp~~~~~--~l~~~-------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
+|+.... .+++. +.++..+|+.+..++.+.+|||||+ |++++++++.+|+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 6665311 11111 2234556777778899999999999 599999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 llDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999999955 446656889999999998 5689999999999988654
No 89
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=3.8e-26 Score=242.69 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=134.9
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
|+++||+|.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 689999999952 234 999999999 99999999999999999999 776430
Q ss_pred HhhCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 378 SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 378 a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.+...++|+... ...+++ .+++..+|+.+..++.+++|||||+ |++++++++.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 112346676631 111222 2346677888888999999999999 5889999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++|+||||++|||.....+.. ++..+.+ .|.|+|++||+++ +..+||++..+.+|++...
T Consensus 161 iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999 5555655 4889999999998 4589999999999998754
No 90
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.7e-26 Score=230.61 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=133.8
Q ss_pred EEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCCC
Q 007057 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKN 388 (620)
Q Consensus 327 l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~~ 388 (620)
++++||+++|++...++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+..
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 80 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccc
Confidence 678999999987666999999999 99999999999999999999 775431 01123566553
Q ss_pred C--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 389 H--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 389 ~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
. ..+++ +..++..+|+...+++.+.+|||||+ +++++++++.+|+++||||||+||
T Consensus 81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gL 160 (232)
T PRK10771 81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (232)
T ss_pred ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 11111 22345667777788999999999999 588999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999555433445789999999998 5688999999999998754
No 91
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=2.2e-26 Score=241.41 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=127.4
Q ss_pred ecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCccccCCCC--CC
Q 007057 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAKNH--PR 391 (620)
Q Consensus 335 ~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp~~~~--~~ 391 (620)
.|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...|+|+... ..
T Consensus 2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4555444 999999999 99999999999999999999 776431 112346776541 11
Q ss_pred ccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 392 l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||||..+
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 121 23456677888888999999999999 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
..+... +..+.+.|.|+|++||+++ +..+|+++..+.+|++...
T Consensus 161 ~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 161 RAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred HHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999994 5556666889999999998 5689999999999998765
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4e-26 Score=237.76 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=134.1
Q ss_pred EEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 678999999974 234 999999999 99999999999999999999 776431
Q ss_pred HhhCccccCCCC---CCccHH---------------------HHHHHHcCCc--hhhccccccchHHHH-HHHHHHHhcC
Q 007057 378 SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 378 a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~--~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
.+...|+|+... ...++. +.++..+|+. +..+++++.|||||+ |++++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 122347777631 111222 2345667776 567899999999999 5888999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEec
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~~ 495 (620)
+|+++||||||+|||+..+..+.. ++..+++ .|.|+|++||+++. ..+||++..+.+|++..+.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999 4555654 48899999999985 5799999999999987653
No 93
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=244.68 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=133.9
Q ss_pred EEEeeeeeecC----Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~----~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |+..+-
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 67899999997 2344 999999999 99999999999999999999 776431
Q ss_pred HhhCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 378 SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 378 a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.+...|+|+... ..+++. ..++..+|+.+..++++++|||||+ |++++++++.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 122346676542 112222 2345667777788899999999999 5888999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+.....+...+. .+.+ .|.|+|++||+++ +..+|++++.+.+|++..+
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~-~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLK-DINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999554 4554 4889999999998 5689999999999998765
No 94
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=4.4e-26 Score=244.07 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=137.0
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-------------------hhC
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAG 381 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-------------------~~G 381 (620)
.+.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-+ +.-
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred ceEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 357899999999987655 999999999 99999999999999999999 6654432 111
Q ss_pred ccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.|+|+... ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 24555431 11222 22346677888889999999999999 59999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~--~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||++|||+..+..+...+. .+.+. |.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 DEP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred cCccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999554 45554 789999999998 4589999999999998765
No 95
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3e-26 Score=225.68 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=136.0
Q ss_pred eEEEeeeeeecCCcc----c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------H
Q 007057 326 EMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S 378 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~----v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a 378 (620)
.++++|+++.|+... + +|||++.+| ++++|+|++|||||||.|++ |+..+. .
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 578999999998765 4 999999999 99999999999999999999 776541 1
Q ss_pred hhCccccCCCCCCcc----H-------------------HHHHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 379 KAGLYLPAKNHPRLP----W-------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 379 ~~G~~vp~~~~~~l~----~-------------------~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
+.-.+|+|++...+. + ..+++..+|+.. .+++.+..|||||+ |++++++++.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 122345555432221 1 235677778754 57899999999999 6999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++|+||||+.||+.-...+.+.+.+--.+.+.|.|++|||.. +..+||++.+|.+|+++..
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 999999999999999999999555433456789999999999 5689999999999998765
No 96
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.9e-26 Score=237.80 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=133.3
Q ss_pred EEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
+.++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999974 234 999999999 99999999999999999999 775431
Q ss_pred --HhhCccccCCC---CCCccHH---------------------HHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKN---HPRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~---~~~l~~~---------------------d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+.. ....++. +.++..+|+. +..++++++|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 11124666653 1112222 2335566775 567899999999999 588899999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+||+++.+.+|++...
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999988 55556666889999999998 5689999999999998765
No 97
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-26 Score=245.13 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=135.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 3789999999987655 999999999 99999999999999999999 776431 11123666
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... ..+++. ++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6531 112222 2345667888888999999999999 599999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+..+..+...+.+...+.+.|+|++|||.+ +..+||++..+.+|++...
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999554433445889999999998 5689999999999998754
No 98
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=4.4e-26 Score=229.32 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=131.7
Q ss_pred CeEEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------
Q 007057 325 SEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------- 377 (620)
..++++||+++|++. .+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 368899999999752 24 999999999 99999999999999999999 776420
Q ss_pred ---HhhCccccCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 378 ---SKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 378 ---a~~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
.+...|+|+... ..++..+ +++..+|+.+..++.+++||+||+ +++++++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012346666531 1122222 335566777778899999999999 5888999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEE
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~ 492 (620)
+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+....|++++.+.+|++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999955443234578999999999866679999999999874
No 99
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=4.6e-26 Score=233.72 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=133.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
+++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 4788999999987655 999999999 99999999999999999999 776431 112236
Q ss_pred ccCCCCC--CccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhc------CCCc
Q 007057 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRES 433 (620)
Q Consensus 384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~------~~~~ 433 (620)
+|+.... ..++ +..++..+|+.+..++.+.+|||||+ |++++++++ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 6665311 1122 22345566777778899999999999 588889998 5999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+.....+...+.+ +. +.+.|+|++||+++ +..+|++++.+.+|++...
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQ-LAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 9999999999999999999995554 55 56889999999998 5579999999999988654
No 100
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=3.2e-26 Score=229.57 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=133.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH---------------hhCccccCCC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKN 388 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---------------~~G~~vp~~~ 388 (620)
++++|++++|+++.+ ++||++.+| ++++|+||||+||||||+++ |++.+.. +...|+|+..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 367899999987665 999999999 99999999999999999999 7654310 1122555543
Q ss_pred C--CCccHH-----------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 389 H--PRLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 389 ~--~~l~~~-----------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
. ..++.. ..++..+|+.+..++.+..||+||+ +++++++++.+|+++||||||+|||+..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 1 112222 2345667787788899999999999 5889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
...+...+. .+.+.+.++|++||+.+. ..+|+++..+.+|++...
T Consensus 160 ~~~l~~~L~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 160 IQELRELIR-SFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 999999554 456667899999999984 589999999999998654
No 101
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=6e-26 Score=242.54 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=137.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5789999999988665 899999999 99999999999999999999 776431 12234666
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... +.+++ +++++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6531 12222 23456677888888999999999999 599999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||+..+..+...+.+...+.+.|+|+||||.+ ...+||++..+.+|++...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999655544445889999999998 4589999999999998754
No 102
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=5.9e-26 Score=228.24 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=130.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh-----HH-----------H----------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SL-----------M---------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli-----~~-----------~---------- 377 (620)
++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+. .+ +
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 468899999987665 999999999 99999999999999999999 887 42 1
Q ss_pred HhhCccccCCCCC-CccHH----------------------HHHHHHcCCchhhccc--cccchHHHH-HHHHHHHhcCC
Q 007057 378 SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 378 a~~G~~vp~~~~~-~l~~~----------------------d~i~~~ig~~~~~~~~--~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+...|+|+.... .+++. ..++..+|+.+..++. +.+|||||+ +++++++++.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 1112366665310 11221 2345556776666666 599999999 58888999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+...+ ..+.+. .|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELI-AELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHH-HHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999954 445655 89999999998 5679999999999988654
No 103
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.1e-26 Score=231.05 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=135.4
Q ss_pred eEEEeeeeeecCCc----c--c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------
Q 007057 326 EMTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~----~--v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------- 376 (620)
+|++++|+|.|... + + ++|++|++| ++++|+|++|||||||+|++ +|-.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 36889999999751 2 2 899999999 99999999999999999999 44322
Q ss_pred -HHhhCccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 377 -MSKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 377 -~a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
..|...+++|... ...++ +..+++.+|++|..+.+++.|||||| |++++++++.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 1222234555431 11122 23457788999999999999999999 58889999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|++||.|||||.|||.....+.+ ++..+. +.|.|++++||-++ +..+|+++.++++|+++..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999 555565 45889999999999 6799999999999998764
No 104
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7e-26 Score=241.67 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=136.5
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~v 384 (620)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.|+
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 46889999999987665 899999999 99999999999999999999 776431 1112356
Q ss_pred cCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 385 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 385 p~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
|++.. +.+++.+ .++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 66531 1222222 345566777788999999999999 59999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999554433345889999999998 4589999999999998764
No 105
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.7e-26 Score=231.10 Aligned_cols=167 Identities=20% Similarity=0.284 Sum_probs=134.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
.++++||++.|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4688999999987655 999999999 99999999999999999999 775431 11224
Q ss_pred cccCCCC--CCccHH----------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ..+++. +.++..+|+.+..++++.+|||||+ |++++++++.+|+++||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6666531 111222 2345556666677889999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+.+ ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 162 DEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 99999999999999988 55556666889999999996 7789999999999998754
No 106
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-26 Score=235.06 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 326 EMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
.++++||++.|++ ..+ ++||+|.+| ++++|+||||||||||+|++ |++.+ ..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 5789999999963 223 999999999 99999999999999999999 77542 1122
Q ss_pred CccccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
..|+|+... ...++ .+.++..+|+.+..++.+.+|||||+ |++++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 346666531 11122 23345667888888999999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+... +..+++ .|.|+|++||+++...+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred EEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999984 445555 48899999999985578999999999998765
No 107
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=5.1e-26 Score=229.10 Aligned_cols=166 Identities=25% Similarity=0.284 Sum_probs=130.7
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
++++||++.|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 468899999987655 999999999 99999999999999999999 776431 112346
Q ss_pred ccCCCC--CCccHHH------------------HHHHHcC-CchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 384 LPAKNH--PRLPWFD------------------LILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 384 vp~~~~--~~l~~~d------------------~i~~~ig-~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+|+... ..+++.+ .++..++ ..+..++.+++|||||+ +++++++++.+|+++||||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 676642 1112222 2333343 34567889999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+..+..+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~LD~~~~~~l~~~l~~-~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred ccCCHHHHHHHHHHHHH-HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999995554 554 4789999999998 5568999999999988654
No 108
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=7.3e-26 Score=227.35 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=129.6
Q ss_pred EEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
++++||++.|++. .+ ++||++.+| ++++|+|||||||||||+++ |+..+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 6789999999764 44 999999999 99999999999999999999 776421
Q ss_pred HhhCccccCCCC----CCccHHH-----------------------HHHHHcCCc-hhhccccccchHHHH-HHHHHHHh
Q 007057 378 SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+... ..+++.+ .++..+++. ...++.+.+|||||+ ++++++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 012235666531 0112111 234556664 467889999999999 58889999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEE
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~ 493 (620)
+.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999999999999995555333347899999999984 56999999999998753
No 109
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=3.3e-26 Score=215.18 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=136.9
Q ss_pred EEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC----------------
Q 007057 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP---------------- 390 (620)
Q Consensus 327 l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~---------------- 390 (620)
+.+++|.++|+..+..+|++++.| ++++|+||+||||||||+.| .|+..|++|..
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAERP 72 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccCC
Confidence 457789999998777999999999 99999999999999999999 77766766521
Q ss_pred ------------Ccc---------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 391 ------------RLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 391 ------------~l~---------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.++ -++.+..++|+.+..++.+.+|||||+ |++++++++.+..++|
T Consensus 73 VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence 111 134567889999999999999999999 5999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||||++.|||.-+..+...+..-..+++.|++||||..+ ...++++.+.+.+|++....
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 999999999999999988555544466889999999997 77999999999999998764
No 110
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.5e-26 Score=232.63 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=135.8
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
..+.++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 46889999999987655 999999999 99999999999999999999 776430 11223
Q ss_pred cccCCCCC--CccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+.... ..++ ++.++..+|+.+..++.+++|||||+ +++++++++.+|++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 164 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence 66665311 0111 22345566777778999999999999 58899999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+...+. .+.+ .+.|+|++||+++ +..+||+++.+.+|++...
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999554 4554 4789999999998 6689999999999998754
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.8e-26 Score=234.50 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=133.4
Q ss_pred EEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
++++||++.|+ +..+ ++||+|.+| ++++|+||||||||||||+| |+..+. .+...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 67899999995 3434 999999999 99999999999999999999 775431 11123
Q ss_pred cccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ...++ +..++..+|+....++.+..||+||+ |++++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5666531 11122 12345567787788899999999999 58888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+..+..+... +..+.+.|.|+|++||+++....|+++..+.+|++...
T Consensus 161 DEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE 216 (274)
T ss_pred eCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999995 55566668899999999986677999999999998765
No 112
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=2.7e-26 Score=230.58 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=127.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCcc--------ccCCC---CCCc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY--------LPAKN---HPRL 392 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~--------vp~~~---~~~l 392 (620)
+.++++++.|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+- .|.. .+... ...+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchhhcccccCCCCC
Confidence 567889999998776 999999999 99999999999999999999 665431 1100 00000 0011
Q ss_pred cH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 393 PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 393 ~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
++ +..++..+|+.+..++.++.|||||+ +++++++++.+|+++||||||+|||+.++.
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 11 12344556777778899999999999 588999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+.+.+.+ +.+.+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 180 ~~~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 180 KCQRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99995554 4555789999999998 557899999999998754
No 113
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.9e-26 Score=230.35 Aligned_cols=167 Identities=21% Similarity=0.240 Sum_probs=132.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~G~ 382 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+ ..+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 5789999999987655 999999999 99999999999999999999 77542 111233
Q ss_pred cccCCCC--CCccHHHH-------------------HHHHc-CCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 383 YLPAKNH--PRLPWFDL-------------------ILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 383 ~vp~~~~--~~l~~~d~-------------------i~~~i-g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
|+|+... ..+++.++ ++..+ ++.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 5666531 11222222 23334 345556788999999999 5888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 164 Pt~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTI-EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred ccccCCHHHHHHHHHHH-HHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 99999999999999954 456666889999999987 6789999999999988654
No 114
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.3e-26 Score=228.19 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=131.4
Q ss_pred eEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 5789999999964 234 999999999 99999999999999999999 776420
Q ss_pred --HhhCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 378 --SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+...|+|+... ..+++. .+++..+|+.+..++.+.+|||||+ +++++++++.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 012346676631 111221 2345667777778889999999999 58889999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+... +..+.+ .|.|+|++||+.+....+++++.+.+|++...
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 999999999999999999999984 455554 57899999999986555568888899987643
No 115
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=248.88 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=134.2
Q ss_pred CCCeEEEeeeeeecCCc-cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC----------ccccCCC
Q 007057 323 ENSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG----------LYLPAKN 388 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~-~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G----------~~vp~~~ 388 (620)
|+.+++++|++++|++. .+ ++||.+.+| +.++|+||||+|||||||+| |.+... .| .|.+|..
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~v~igyf~Q~~ 394 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGETVKIGYFDQHR 394 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCceEEEEEEehh
Confidence 34688999999999664 44 999999999 99999999999999999999 544432 22 1333332
Q ss_pred C---CCccHHH---------------HHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 389 H---PRLPWFD---------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 389 ~---~~l~~~d---------------~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
. ...++++ ..+.+++.. +...+++++|||||| |+.+++.++.+|++||||||||+||+.+
T Consensus 395 ~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s 474 (530)
T COG0488 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474 (530)
T ss_pred hhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHH
Confidence 0 0012222 334555543 466899999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCcccc
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLRP 500 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l~~ 500 (620)
..+|.+++..| .+|||+||||++ +..+|++++.+.+ .+....+.+..
T Consensus 475 ~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~ 522 (530)
T COG0488 475 LEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED 522 (530)
T ss_pred HHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence 99999988877 899999999999 6689999999988 66666555544
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.7e-26 Score=230.15 Aligned_cols=166 Identities=21% Similarity=0.231 Sum_probs=131.9
Q ss_pred EEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 367899999987 555 999999999 99999999999999999999 775431 111246
Q ss_pred ccCCCC--CCccHH---------------------HHHHHHcCCch--hhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 384 LPAKNH--PRLPWF---------------------DLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 384 vp~~~~--~~l~~~---------------------d~i~~~ig~~~--~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
+|+... ..+++. .+++..+|+.. ..++.+++|||||+ +++++++++.+|+++||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 666531 112222 23455667764 67889999999999 58999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+...+ ..+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 160 DEPt~~LD~~~~~~l~~~L-~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 160 DEPFGALDPITRDQLQEEF-KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred cCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999954 44554 4789999999998 5689999999999998654
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.4e-26 Score=225.41 Aligned_cols=163 Identities=21% Similarity=0.342 Sum_probs=130.3
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~vp 385 (620)
++++|+++.|++..+ ++||++.+| +++|+||||||||||||++ |++.+ ..+...|+|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 468899999987655 999999997 8999999999999999999 77642 012234667
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
+... ..+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6541 111222 2345566777778899999999999 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEE
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~ 493 (620)
+|||+.....+.+ +++.+.+ +.|+|++||+.+. ..+|++++.+.+|++..
T Consensus 159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999998 5555665 4899999999984 57899999999998754
No 118
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.6e-26 Score=237.41 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=135.0
Q ss_pred EEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
|+++||++.|++. .+ ++||+|.+| ++++|+||||||||||+|+| |++.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 6899999999742 23 999999999 99999999999999999999 775421
Q ss_pred ----------------------HhhCccccCCCCCC---ccH---------------------HHHHHHHcCCc-hhhcc
Q 007057 378 ----------------------SKAGLYLPAKNHPR---LPW---------------------FDLILADIGDH-QSLEQ 410 (620)
Q Consensus 378 ----------------------a~~G~~vp~~~~~~---l~~---------------------~d~i~~~ig~~-~~~~~ 410 (620)
.+...|+|+..... .++ +..++..+|+. +..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 11124677753111 111 23446677885 67899
Q ss_pred ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 411 NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 411 ~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
++.+|||||+ |++++++++.+|+++||||||+|||+.....+.. ++..+++.|.|+|++|||++ +..+||+++.+.+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999 5888999999999999999999999999999998 55667767889999999998 6689999999999
Q ss_pred ceEEEec
Q 007057 489 AATEFSL 495 (620)
Q Consensus 489 g~~~~~~ 495 (620)
|++..+.
T Consensus 241 G~i~~~g 247 (305)
T PRK13651 241 GKIIKDG 247 (305)
T ss_pred CEEEEEC
Confidence 9987653
No 119
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.93 E-value=7.5e-26 Score=231.77 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=134.2
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~v 384 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+ ..+...|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 578999999987666 999999999 99999999999999999999 77642 11123466
Q ss_pred cCCCC--CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 385 PAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 385 p~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
|+... ...++ +.+++..+|+.+..++.+..||+||+ +++++++++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66531 11111 12345566777778899999999999 5889999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+.. ++..+.+.+.|+|++||+++. ..+|++++.+.+|++..+
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999999999999999 455566667899999999984 589999999999998765
No 120
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.4e-25 Score=227.77 Aligned_cols=166 Identities=21% Similarity=0.209 Sum_probs=132.2
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hh-hCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK-AGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~-~G~ 382 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ |+..+- .+ .-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4688999999987655 999999999 99999999999999999999 775421 11 122
Q ss_pred cccCCCC--CCccH-----------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 383 YLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 383 ~vp~~~~--~~l~~-----------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ +++++++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 5555431 11111 12345566777778899999999999 5889999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|+++||||||+|||+.....+.+.+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELL-KSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHH-HHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 99999999999999999999999954 44555 689999999998 4579999999999998754
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.8e-26 Score=228.92 Aligned_cols=167 Identities=18% Similarity=0.192 Sum_probs=132.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4789999999987655 999999999 99999999999999999999 775421 112235
Q ss_pred ccCCCCC-CccH-----------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 384 LPAKNHP-RLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 384 vp~~~~~-~l~~-----------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
+|+.... ..++ ...++..+|+. +..++.+..|||||+ +++++++++.+|+++||||||+|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 6665310 0011 22355667775 467889999999999 58889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 444 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+.....+...+ ..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 LD~~~~~~l~~~l-~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 162 LDPTSTEIIEELI-VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred CCHHHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999854 44554 4889999999998 5679999999999988654
No 122
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=9.2e-26 Score=224.81 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=132.0
Q ss_pred EEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCCCC
Q 007057 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (620)
Q Consensus 328 ~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~~~ 389 (620)
+++||+++|+....++||++.+| ++++|+||||||||||+|++ |++.+. .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 57899999986445999999999 99999999999999999999 776431 112336666531
Q ss_pred C--CccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 007057 390 P--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (620)
Q Consensus 390 ~--~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD 445 (620)
. .+++. .+++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 11221 2345666777778899999999999 5888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.....+...+.+...+.+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999555433344789999999998 4678999999999988654
No 123
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=231.06 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=134.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5789999999987665 999999999 99999999999999999999 776431
Q ss_pred --HhhCccccCCCC--CCccHH-----------------------------HHHHHHcCCchhhccccccchHHHH-HHH
Q 007057 378 --SKAGLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~-----------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~ 423 (620)
.+...|+|+... ..+++. ..++..+|+.+..++.+.+||+||+ |++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 011246666531 111111 2345556777778999999999999 588
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|++|||||||+|||+.....+...+.+ +. +.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 88999999999999999999999999999995544 55 45789999999998 5789999999999988654
No 124
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.3e-26 Score=235.35 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=133.4
Q ss_pred EEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
++++||+++|++ ..+ ++||+|.+| ++++|+||||||||||+|++ |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999964 234 999999999 99999999999999999999 775431
Q ss_pred --HhhCccccCCCC---CCccH---------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+... ...++ ++.++..+|+. +..++++.+|||||+ +++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112346777531 01122 22345567775 556889999999999 588999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
.+|+++||||||+|||+.....+... +..+.+ .|.|||++||+.+ +..+||++..+.+|++..+.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999995 455654 4889999999998 55899999999999987653
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=228.22 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=134.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
+++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 3678999999987655 999999999 99999999999999999999 775320
Q ss_pred HhhCccccCCCC--CCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 378 SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 378 a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
.+.-.|+|+... ..+++.+ .++..+|+...+++.+..|||||+ +++++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 111246666531 1122222 234556777778899999999999 589999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+.. +++.+.+.+.|+|++||+.+. ..+|++++.+.+|++..+
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999 555566668899999999984 578999999999998754
No 126
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.9e-26 Score=217.18 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=132.9
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhh-H--------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-S-------------------------- 375 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli-~-------------------------- 375 (620)
..++++||++.||++.+ ++|+.|+++ .+++|+||+|||||||||++..+ .
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 36789999999998776 999999999 99999999999999999999322 1
Q ss_pred -HHHhhCccccCCCC-CCccHHHHHHH---------------------HcC----CchhhccccccchHHHH-HHHHHHH
Q 007057 376 -LMSKAGLYLPAKNH-PRLPWFDLILA---------------------DIG----DHQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 376 -~~a~~G~~vp~~~~-~~l~~~d~i~~---------------------~ig----~~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
+..+.| .|+|.+. ..++++|++.- ... ..|.++++...|||||+ |+++|++
T Consensus 85 ~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 133444 5666642 22456665521 111 13567888889999999 6999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|++|||||||++|||.+...+.+ ++..|++ .-|+++|||++. -++++|....|..|.++..
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 999999999999999999999999999 5666774 579999999998 5589999999999987654
No 127
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1.4e-25 Score=241.20 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=137.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~v 384 (620)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 36899999999987665 899999999 99999999999999999999 776531 1122356
Q ss_pred cCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 385 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 385 p~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
|+... +.+++.+ +++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66531 1222222 345567888889999999999999 59999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++|||+..+..+...+.+...+.+.|+|+||||.+ ...+||++..+.+|++...
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999555444445889999999998 4589999999999998754
No 128
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=233.38 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=135.5
Q ss_pred CeEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------Hh
Q 007057 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~ 379 (620)
.+++++||++.|+ +..+ ++||++.+| ++++|+||||||||||+|+| |+..+. .+
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 3688999999996 4444 999999999 99999999999999999999 776421 11
Q ss_pred hCccccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 380 AGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 380 ~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
...|+|+... ...++ ++.++..+|+.+..++++..||+||+ |+.++++++.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2346777631 11122 22345667787788999999999999 58889999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+...+ ..+.+ .|.|+|++||+++. ..+|+++..+.+|++..+
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999954 44554 48899999999985 579999999999998765
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=231.09 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=134.9
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
..++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+. .+...
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 46899999999987655 999999999 99999999999999999999 776420 11234
Q ss_pred cccCCCC--CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+... ..+++ ++.++..+++.+.+++.+.+|||||+ |++++++++.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6666521 11111 22345666777778899999999999 59999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l-~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALV-HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999954 44554 4789999999998 5589999999999998654
No 130
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=232.58 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=133.2
Q ss_pred EEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhC
Q 007057 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G 381 (620)
+.++||+++|++ ..+ ++||++.+| ++++|+||||||||||+|+| |++.+. .+..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 678999999963 334 999999999 99999999999999999999 775421 1223
Q ss_pred ccccCCCC---CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.|+|+... ...++. ..++..+|+.+..++.+.+|||||+ +++++++++.+|+++|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46676531 111221 2345566777778899999999999 5888899999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999955 455656889999999998 4579999999999998765
No 131
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=229.79 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=134.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------ 377 (620)
+.++++||++.|+++.+ ++||++.+| ++++|+||||+||||||+++ |+..+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 46899999999987655 999999999 99999999999999999999 775421
Q ss_pred --------HhhCccccCCCC--CCccHHH----------------------HHHHHcCCchhh-ccccccchHHHH-HHH
Q 007057 378 --------SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 --------a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~-~~~~s~lSgg~k-rl~ 423 (620)
.+.-.|+|+... ..+++.+ .++..+|+.+.. ++.+++|||||+ +++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 011245666531 1122222 234556666554 788999999999 588
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999 55556666899999999998 4578999999999998754
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=1.3e-25 Score=227.81 Aligned_cols=166 Identities=23% Similarity=0.275 Sum_probs=128.3
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HH-------------------HHhh-C
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA-G 381 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~-------------------~a~~-G 381 (620)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+. .+ ..+. .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 468899999987655 999999999 99999999999999999999 873 21 0112 2
Q ss_pred ccccCCCCC--CccH----------------------------HHHHHHHcCCch-hhccccc-cchHHHH-HHHHHHHh
Q 007057 382 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL 428 (620)
Q Consensus 382 ~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~~-~~~~~~s-~lSgg~k-rl~~i~~l 428 (620)
.|+|+.... .++. +..++..+|+.+ ..++.+. .|||||+ |+++++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 356665311 1111 122344556653 4567776 5999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hh-ccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~-~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+.. .+ |++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHH-HHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999954 45666678999999999854 66 799999999998654
No 133
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=233.99 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
++++||++.|+.. .+ ++||+|.+| ++++|+||||||||||+|++ |++.+-
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 6789999999632 23 999999999 99999999999999999999 776431
Q ss_pred --HhhCccccCCCC---CCccH---------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+... ...++ +..++..+|+. +..++.+..|||||+ |++++++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 112246666531 01122 22345566775 466899999999999 588889999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
.+|+++||||||+|||+..+..+.. ++..+++.|.|+|++|||++ +..+|++++.+.+|++..+.
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999998 55667666889999999998 45899999999999998763
No 134
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=238.62 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=135.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.|+++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 3688999999987655 999999999 99999999999999999999 776431 11223566
Q ss_pred CCCC--CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 386 AKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 386 ~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
++.. ..+++ +++++..+++.+..++++.+|||||+ |++++++++.+|+++||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6531 11111 22346667888888999999999999 59999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+..+..+...+.+ +.+ .+.|+|++|||++ ...+||++..+.+|++...
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~-l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999995554 554 4889999999998 5689999999999998765
No 135
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=1.1e-25 Score=230.03 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=131.2
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCCC--Cc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RL 392 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~~--~l 392 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-+ ....|+|+.... .+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccccc
Confidence 5789999999987655 999999999 99999999999999999999 7764421 112356665311 11
Q ss_pred --cH--------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 007057 393 --PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (620)
Q Consensus 393 --~~--------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~a 455 (620)
.. +..++..+|+.+..++++.+||+||+ +++++++++.+|+++||||||+|||+.....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 162 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 11 22345677888888999999999999 58899999999999999999999999999999995
Q ss_pred HHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 456 ILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 456 ll~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+ ++..
T Consensus 163 L~~-~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 163 IDQ-LRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred HHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 544 554 4789999999998 4589999988865 5543
No 136
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=232.45 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=134.5
Q ss_pred eEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhC
Q 007057 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G 381 (620)
.++++||++.|++ +.+ ++||+|.+| ++++|+||||+||||||++| |+..+- .+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5789999999974 334 999999999 99999999999999999999 776431 1122
Q ss_pred ccccCCC---CCCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKN---HPRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~---~~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.|+|+.. ....++ ++.++..+|+.+.+++.+.+|||||+ +++++++++.+|++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3666643 111122 23345667888889999999999999 5889999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+.. ++..+.+. +.|+|++||+++....|+++..+.+|.+..+
T Consensus 164 LDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 164 LDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999 45556654 7899999999986667999999999998765
No 137
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=1.1e-25 Score=251.14 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=135.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 4789999999987555 999999999 99999999999999999999 776430 011234
Q ss_pred ccCCCCC----------CccH-------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~~----------~l~~-------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+.... .+.+ ++.++..+|+.+..++++++|||||+ |++++++++.+|+++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5553210 1111 23456778888888999999999999 5888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 162 Pt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 162 PFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred CcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999 45556666889999999998 6689999999999988654
No 138
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=219.06 Aligned_cols=168 Identities=25% Similarity=0.335 Sum_probs=139.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC-c
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G-~ 382 (620)
.++++||+..||...+ ++||++++| ++++|+||||+|||||||+| |++.+ .++.| .
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 5789999999998776 999999999 99999999999999999999 88764 23444 3
Q ss_pred cccCCC--CCCccHHH--------------------HHHHHcC-CchhhccccccchHHHHH-HHHHHHhcCCCcEEEEc
Q 007057 383 YLPAKN--HPRLPWFD--------------------LILADIG-DHQSLEQNLSTFSGHISR-IVDILELVSRESLVLID 438 (620)
Q Consensus 383 ~vp~~~--~~~l~~~d--------------------~i~~~ig-~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLD 438 (620)
|||+.. ++.+++.+ .+|+.|. +.+..++..++|||||+| ++++++++.+|+++|||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 777754 23344333 3444443 456778899999999996 88889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHH-hhccccceeeCceEEEec
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~~ 495 (620)
||+.||.|.-...+.. +++.+++. +.||++|.++...+ .++|+.+++.+|.+.+..
T Consensus 162 EPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 162 EPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred CCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 9999999999999999 55667765 66999999999866 799999999999998864
No 139
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=231.73 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=133.7
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
.++++||+++|+ ...+ ++||++.+| ++++|+||||||||||+|+| |+..+. .+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 478899999995 4434 999999999 99999999999999999999 775431 11124
Q ss_pred cccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|+... ...++ ++.++..+|+.+..++.+..|||||+ |++++++++.+|+++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5666531 11122 22345666787888999999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+.+.+ ..+.+ .+.|+|++||+++. ..+|++++.+.+|++..+
T Consensus 162 DEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFL-NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred eCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 9999999999999999944 44554 48899999999984 589999999999998765
No 140
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=239.59 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=138.8
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcc
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLY 383 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~ 383 (620)
..+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346899999999987555 899999999 99999999999999999999 776431 112236
Q ss_pred ccCCC--CCCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKN--HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~--~~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|++. +..+++.+ .++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 66654 12222322 345566777888999999999999 5999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
|++|||+..+..+...+.+.+.+.+.|+|++|||.+. ..+||++..+.+|++...
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999986666555568899999999984 689999999999998754
No 141
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1.6e-25 Score=223.81 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=126.8
Q ss_pred EEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
++++|+++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 688999999975 334 999999999 99999999999999999999 775421 11234
Q ss_pred cccCCCCC-CccHHH---------------HHHHHcCCchhhccc-----------cccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHP-RLPWFD---------------LILADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~~~-----------~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+.... ..++.+ .++..+++.+.+++. +.+|||||+ |+.++++++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 66665411 012222 234455665555543 469999999 58889999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEE
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
+||||||+|||+.....+.+.+. .+.+. .|+|++||+.++..+|++++.+.+|++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~-~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLR-QLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999554 45554 89999999998668999999999998753
No 142
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.6e-25 Score=223.39 Aligned_cols=164 Identities=23% Similarity=0.236 Sum_probs=129.3
Q ss_pred CCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------HhhCcc
Q 007057 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLY 383 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------a~~G~~ 383 (620)
++..+.++|++++|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+- .+...|
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3457899999999987655 999999999 99999999999999999999 775431 111235
Q ss_pred ccCCCC--CCccHHH------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 384 LPAKNH--PRLPWFD------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 384 vp~~~~--~~l~~~d------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
+|+... ..++..+ .++..+++.+..++.+.+||+||+ +++++++++.+|+++||||||+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555431 1122222 344556777777899999999999 5899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+..
T Consensus 167 ~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 167 NLDLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999988 55555666889999999998 5689998877653
No 143
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=2.5e-25 Score=229.15 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=132.0
Q ss_pred eEEEeeeeeecCC---------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------
Q 007057 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------- 377 (620)
+++++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 5789999999952 334 999999999 99999999999999999999 775420
Q ss_pred ------HhhCccccCCCC----CCccHH----------------------HHHHHHcCCc-hhhccccccchHHHH-HHH
Q 007057 378 ------SKAGLYLPAKNH----PRLPWF----------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 ------a~~G~~vp~~~~----~~l~~~----------------------d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~ 423 (620)
.+...|+|+... ..+++. ..++..+|+. ...++.+..|||||+ +++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 112346676531 111221 2345566774 567889999999999 588
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 89999999999999999999999999999995554333448899999999984 479999999999988654
No 144
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=2e-25 Score=227.99 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=132.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------------- 377 (620)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 468899999987555 999999999 99999999999999999999 765420
Q ss_pred ------HhhCccccCCCC--CCccHH----------------------HHHHHHcCCchhhccccccchHHHH-HHHHHH
Q 007057 378 ------SKAGLYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ------a~~G~~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ...++. .+++..+|+.+..++.+.+|||||+ ++++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 112235555431 111221 2345566777778889999999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+++ +..+|++++.+.+|++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999555433334789999999998 4589999999999998654
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.4e-25 Score=231.66 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=132.3
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhC
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 381 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G 381 (620)
.++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35688999988766 999999999 99999999999999999999 776431 0122
Q ss_pred ccccCCCCC--CccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.|+|+.... .+++ +++++..+|+.+.+++.+++|||||+ +++++++++.+|+++||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 466665311 1122 12345667887788999999999999 58899999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999554433344789999999998 5689999999999988654
No 146
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=2.3e-25 Score=228.45 Aligned_cols=168 Identities=19% Similarity=0.170 Sum_probs=133.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H---------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~--------- 377 (620)
+++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+ +
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 6889999999987655 999999999 99999999999999999999 77532 1
Q ss_pred ---HhhCccccCCCC----CCccH----------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ..++. +++++..+++. +..++.+++|||||+ |+++++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 011346776641 01111 12345566775 367899999999999 589999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+.+.. .+|++++.+.+|++...
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999955543333478999999999855 68999999999998754
No 147
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.5e-25 Score=221.79 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=127.9
Q ss_pred eeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhCccccC
Q 007057 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (620)
Q Consensus 331 ~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G~~vp~ 386 (620)
||+|+|++..+++||++.+ ++++|+|||||||||||+++ |++.+- .+...|+|+
T Consensus 5 ~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 8999999877799999987 79999999999999999999 776421 111235666
Q ss_pred CCCC--CccH-------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 387 ~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
.... .+++ +.+++..+|+.+..++.+++|||||+ ++.++++++.+|+++||||||+||
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5311 1122 12345667777778899999999999 588999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 163 D~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 163 DRALRLQLLPELK-QIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CHHHHHHHHHHHH-HHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999554 4554 4789999999998 558999999999998754
No 148
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.6e-25 Score=228.05 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=130.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------------- 376 (620)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 6889999999987655 999999999 99999999999999999999 77532
Q ss_pred HHhhCccccCCCCC-CccHHH---------------------HHHHHcCC----chhhccccccchHHHH-HHHHHHHhc
Q 007057 377 MSKAGLYLPAKNHP-RLPWFD---------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d---------------------~i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
..+...|+|+.... ..++.+ +++..+|+ .+.+++++.+|||||+ |++++++++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 01122366665311 122222 23444444 2345788999999999 589999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+... ++.+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIEDL-IMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHH-HHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999984 445554 689999999998 5589999999999998654
No 149
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=230.52 Aligned_cols=166 Identities=20% Similarity=0.168 Sum_probs=131.2
Q ss_pred EEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 678999999974 234 999999999 99999999999999999999 776421
Q ss_pred --HhhCccccCCCC---CCccHHH---------------------HHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKNH---PRLPWFD---------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~~---~~l~~~d---------------------~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+... ...++.+ .++..+|+. ...++.+++|||||+ |++++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 111246776531 1112222 234456775 356889999999999 588899999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999955 445656889999999998 5589999999999998754
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=231.07 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=135.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------- 377 (620)
.+++++|++++|++ ..+ ++||++.+| ++++|+||||||||||+|+| |+..+-
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 57899999999964 234 999999999 99999999999999999999 776331
Q ss_pred HhhCccccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 378 a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
.+...|+|+... ...++ ++.++..+|+.+..++.++.||+||+ +++++++++.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111235665531 11122 22345667888888999999999999 588999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+...+ ..+.+ .|.|+|++||+++....|++++.+.+|.+..+
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999955 44554 48899999999986678999999999998765
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=226.76 Aligned_cols=167 Identities=22% Similarity=0.310 Sum_probs=130.5
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------ 377 (620)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+-
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 47899999999987655 999999999 99999999999999999999 776421
Q ss_pred --HhhCccccCCCCC-CccHHHHH----------------------HHHcCC----chhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+.... ..++.+++ +..+++ .+..++.+++|||||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112355655311 12333322 223333 2346778899999999 5889999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIIN-LKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999995544 554 6899999999984 588999999999998754
No 152
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=1.3e-25 Score=222.28 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=121.6
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhCc
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G~ 382 (620)
++||++.|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4688999987655 999999999 99999999999999999999 775420 11123
Q ss_pred cccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 383 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 383 ~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
|+|+... ...++ +..++..+|+.+..++.+..||+||+ +++++++++.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4555431 11121 12345667777788899999999999 588999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccce
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~ 485 (620)
|||+|||+.....+...+ ..+.+.+.|+|++||+.++..+|+++..
T Consensus 160 EPt~~LD~~~~~~l~~~l-~~~~~~~~tii~~sh~~~~~~~~d~i~~ 205 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLL-LELNDEGKTIIIVTHDPEVAKQADRVIE 205 (206)
T ss_pred CCcCCCCHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHhhcCEEEe
Confidence 999999999999999954 4555558899999999986677876543
No 153
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=229.57 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=132.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------------- 377 (620)
++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 678999999987665 999999999 99999999999999999999 776432
Q ss_pred -HhhCccccCCCC--CCccHH-------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHh
Q 007057 378 -SKAGLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+... ..+++. ..++..+|+....++.+++|||||+ ++++++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 112345666531 112222 2344456666677889999999999 58888998
Q ss_pred c---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 V---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~---------~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+ .+|+++||||||+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 8 59999999999999999999999995554 554 4789999999998 5579999999999988754
No 154
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=2.7e-25 Score=229.22 Aligned_cols=167 Identities=18% Similarity=0.167 Sum_probs=131.1
Q ss_pred eEEEeeeeeecCC---------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------
Q 007057 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------- 377 (620)
+++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 5789999999962 234 999999999 99999999999999999999 776431
Q ss_pred ---HhhCccccCCCC----CCccH----------------------HHHHHHHcCC-chhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGD-HQSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~-~~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ..+.+ +++++..+|+ .+..++.+++||+||+ ++++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 112235666531 01110 1234566777 3556778899999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLE-LQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH-HHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999995554 554 4789999999998 5578999999999988654
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=2.7e-25 Score=226.37 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=130.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------------- 377 (620)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+..+-
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 678999999987555 999999999 99999999999999999999 776421
Q ss_pred HhhCccccCCCCC-CccHHH----------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+.... ..+..+ .++..+|+. +..++.+..|||||+ +++++++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 0112355554310 022222 234455665 567888999999999 588899999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEEL-IQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999984 445555 489999999998 5689999999999998654
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=231.45 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=132.3
Q ss_pred CeEEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------
Q 007057 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------- 377 (620)
+.++++|+++.|+++ .+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 468999999999763 24 999999999 99999999999999999999 776431
Q ss_pred -----HhhCccccCCCCC---CccHH---------------------HHHHHHcCCc-hhhccccccchHHHH-HHHHHH
Q 007057 378 -----SKAGLYLPAKNHP---RLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 -----a~~G~~vp~~~~~---~l~~~---------------------d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+.... ..++. +.++..+++. +..++.+++|||||+ |+++++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 0112366665310 11111 1234556663 567889999999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998554433345789999999998 5689999999999998754
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.8e-25 Score=226.07 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=129.5
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-----H-----------H--------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M-------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-----~-----------~-------- 377 (620)
..++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+.. + +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 46889999999987655 999999999 99999999999999999999 7742 0 0
Q ss_pred --HhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+.... ..++.+++ +..+|+. ...++.+.+|||||+ |++++++
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112356665310 11222222 2333442 235678899999999 5888999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELI-HELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999954 44554 689999999998 5589999999999998654
No 158
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.4e-25 Score=227.65 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=130.2
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-----H-------------------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L------------------- 376 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-----~------------------- 376 (620)
...++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+.. +
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 357899999999987665 999999999 99999999999999999999 7642 1
Q ss_pred --HHhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHH
Q 007057 377 --MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 377 --~a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
..+...|+|+.... ..+.++++ +..+++. +..++.+++|||||+ |+++++
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 01112366665310 01222222 2233332 345688999999999 589999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+++ +..+|++++.+.+|++..+
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEEL-ITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999884 444554 579999999998 5689999999999998765
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=2.6e-25 Score=223.57 Aligned_cols=162 Identities=23% Similarity=0.219 Sum_probs=127.9
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+- .+...
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 36889999999987665 999999999 99999999999999999999 775421 11224
Q ss_pred cccCCCCC-CccH-------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 383 YLPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 383 ~vp~~~~~-~l~~-------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
|+|+.... ..++ +..++..+|+. ...++++.+||+||+ +++++++++.+|+++|||||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56655310 0111 22455667775 467899999999999 59999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
|+|||+.....+...+.+...+.+.|+|++||+.+....||+++.+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 99999999999999555543445789999999998656799888875
No 160
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=2.3e-25 Score=214.88 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=113.4
Q ss_pred EEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccH-------H
Q 007057 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F 395 (620)
Q Consensus 327 l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~-------~ 395 (620)
++++|++++|++ ..+ ++|+++.+| ++++|+||||+||||||+++ .|.+.|.+|...+.. .
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDP 71 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCH
Confidence 367899999975 334 999999999 99999999999999999999 555555444211100 0
Q ss_pred HHHHHHcCCc--------hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 007057 396 DLILADIGDH--------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (620)
Q Consensus 396 d~i~~~ig~~--------~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~ 466 (620)
......++.- ..+...+ ||+||+ |++++++++.+|+++||||||+|||+.....+...+ ..+.+.+.|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~~t 148 (173)
T cd03246 72 NELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI-AALKAAGAT 148 (173)
T ss_pred HHHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH-HHHHhCCCE
Confidence 0111111100 0111111 999999 588999999999999999999999999999999954 555666889
Q ss_pred EEEEccChhHHhhccccceeeCce
Q 007057 467 AVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 467 vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
+|++||+.+....|++++.+.+|+
T Consensus 149 ii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 149 RIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCC
Confidence 999999998667899998888775
No 161
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.4e-25 Score=220.33 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=119.3
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+. .+.-.|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 678999999987655 999999999 99999999999999999999 665431 01112344
Q ss_pred CCCC--CCccH------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 386 AKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 386 ~~~~--~~l~~------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
+... ..++. ++.++..+|+.+..++++++|||||+ +++++++++.+|+++||||||+||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 3321 11111 23356667887778999999999999 588899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
|+.....+... +..+.+.+.|+|++||+.+....|+
T Consensus 161 D~~~~~~l~~~-l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 161 DKQGVARLEAL-LAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEEecChhhhccCC
Confidence 99999999984 4445566789999999998553343
No 162
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=229.55 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=131.8
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------HhhCcccc
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------a~~G~~vp 385 (620)
.++++||+++|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 578999999995 4445 999999999 99999999999999999999 876431 11133666
Q ss_pred CCCCC----Ccc-------------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 386 AKNHP----RLP-------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 386 ~~~~~----~l~-------------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
+.... ... ..+.++..+|+.+..++.+.+|||||+ +++++++++.+|+++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 55210 000 122345677888888999999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+... +..+.+.|.|+|++||+.+ +..+|++++.+ +|++...
T Consensus 165 llDEPt~~LD~~~~~~l~~~-L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISL-LRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred EEeCCCccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 99999999999999999995 4556666889999999997 56899988655 8887654
No 163
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=237.49 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhCc
Q 007057 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G~ 382 (620)
+++ ||+|+|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+...
T Consensus 2 l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 2 LEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred eEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 456 89999988666999999999 99999999999999999999 776431 01123
Q ss_pred cccCCCC--CCccH---------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 383 YLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 383 ~vp~~~~--~~l~~---------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
|+|+... ..+++ +++++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||||+||
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 5566531 11222 23456677888888999999999999 589999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+..+..+...+.+...+.+.|+|++|||.+ +..+||++..+.+|++...
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999554433344789999999997 6689999999999998654
No 164
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3e-25 Score=214.15 Aligned_cols=153 Identities=24% Similarity=0.344 Sum_probs=112.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc-----HH-HHH
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-----WF-DLI 398 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~-----~~-d~i 398 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ +|.+.|.+|...+. .. ...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKII--------LGLLKPDSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEEcccchHhh
Confidence 357899999976555 999999999 99999999999999999999 44444433311100 00 000
Q ss_pred HHHcCC---------chhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007057 399 LADIGD---------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 468 (620)
Q Consensus 399 ~~~ig~---------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vl 468 (620)
...++. ...+...+. ||+||+ +++++++++.+|+++||||||+|||+.....+.+.+ +.+.+.|.|+|
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii 149 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL-RELKKEGKTIL 149 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHCCCEEE
Confidence 000100 000111111 999999 588999999999999999999999999999999954 45565578999
Q ss_pred EEccChh-HHhhccccceeeCce
Q 007057 469 VTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 469 i~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
++||+.+ +..+|++++.+.+|+
T Consensus 150 i~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 150 LSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred EECCCHHHHHHhCCEEEEEeCCC
Confidence 9999998 456899999988775
No 165
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.3e-25 Score=223.71 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=133.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-----------------hhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-----------------~~G~~vp~ 386 (620)
+.++|++++|+++.+ ++++++.+| ++++|+||||+|||||||++ |+..+-+ +.-.|+|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 357899999987656 999999999 99999999999999999999 6664310 11235555
Q ss_pred CCCC--CccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
.... .+++ ++.++..+|+.+.+++.+..||+||+ +++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4311 1122 12345567887888999999999999 5899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+.....+.+.+.+ +.+ .+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 160 gLD~~~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 160 ALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred cCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999995554 554 4889999999998 5689999999999988654
No 166
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=3.8e-25 Score=226.32 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=130.4
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----H-----------------HhhCc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----~-----------------a~~G~ 382 (620)
.++++||+++|+...+ ++||++.+| ++++|+||||||||||+|+| |+..+ - .+...
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 5789999999943223 999999999 99999999999999999999 77643 0 01223
Q ss_pred cccCCCC----CCccH-------------------HHHHHHHcCCch---hhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 383 YLPAKNH----PRLPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 383 ~vp~~~~----~~l~~-------------------~d~i~~~ig~~~---~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
|+|+... ....+ +..++..+++.+ .+++.+.+||+||+ +++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 6666531 11111 122345556654 46788999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998554433345789999999998 4579999999999998754
No 167
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=255.85 Aligned_cols=167 Identities=21% Similarity=0.216 Sum_probs=128.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh----hC----ccccCCCCC----C
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG----LYLPAKNHP----R 391 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~----~G----~~vp~~~~~----~ 391 (620)
|.++||+++||++.+ ++||+|.+| ++++|+||||||||||||+| |++.+-.- .| .|+|+.... .
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 678999999998766 999999999 99999999999999999999 76543100 01 123332100 0
Q ss_pred ccH---------------------------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHH
Q 007057 392 LPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (620)
Q Consensus 392 l~~---------------------------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~ 424 (620)
+.+ +..++..+|+. +..++++++|||||+ |+++
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 000 11234556665 467889999999999 6899
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCcc
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETL 498 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l 498 (620)
+++++.+|++|||||||+|||+.....|...+.+ .+++||+||||++ +..+|++++.+.+|++....+++
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~----~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS----YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCH
Confidence 9999999999999999999999998887774333 3679999999998 56899999999999886554443
No 168
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4e-25 Score=228.39 Aligned_cols=167 Identities=20% Similarity=0.195 Sum_probs=132.9
Q ss_pred eEEEeeeeeecC--Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+++++|+++.|+ ++.+ ++||++.+| ++++|+|||||||||||+++ |+..+ +.+..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 678999999995 3344 999999999 99999999999999999999 77543 11112
Q ss_pred ccccCCC---CCCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKN---HPRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~---~~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.|+|+.. ....++. .+++..+|+.+..++.+.+|||||+ +++++++++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4666653 1112222 2345566777788999999999999 5888999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+...+. .+.+. +.|+|++||+.+....|++++.+.+|++...
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMV-DLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 999999999999999998554 45544 5899999999986568999999999998654
No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.2e-25 Score=229.27 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=134.2
Q ss_pred eEEEeeeeeecCC------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------
Q 007057 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------- 377 (620)
+++++|++++|++ +.+ ++||+|.+| ++++|+||||||||||++++ |++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 6789999999963 234 999999999 99999999999999999999 776431
Q ss_pred -HhhCccccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 378 -SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 378 -a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+...|+|+... ....+ ++.++..+|+.+..++.+.+|||||+ +++++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 112346666531 00011 22346667888888999999999999 58888999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+..+..+.. ++..+.+ .|.|+|++||+++....|++++.+.+|++..+
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 99999999999999999999998 4555654 48899999999986656999999999998765
No 170
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.5e-25 Score=229.76 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=132.7
Q ss_pred EEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
++++||++.|++ ..+ ++||+|.+| ++++|+||||||||||+|+| |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 688999999963 234 999999999 99999999999999999999 775421
Q ss_pred --HhhCccccCCCC-CCc--cH---------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKNH-PRL--PW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~~-~~l--~~---------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+... ..+ ++ +..++..+|+. +..++.+.+|||||+ +++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112246777531 011 11 12345667775 567889999999999 588889999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+++ +..+|+++..+.+|++...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 5555654 5889999999998 5589999999999998765
No 171
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-25 Score=232.78 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=134.9
Q ss_pred CCeEEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------
Q 007057 324 NSEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------ 377 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------ 377 (620)
...++++|+++.|++. .+ ++||+|.+| ++++|+||||||||||+|+| |+..+-
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 3578999999999742 24 999999999 99999999999999999999 765321
Q ss_pred -----------------HhhCccccCCCC---CCccH---------------------HHHHHHHcCCc-hhhccccccc
Q 007057 378 -----------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTF 415 (620)
Q Consensus 378 -----------------a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~-~~~~~~~s~l 415 (620)
.+.-.|+|+... ...++ ...++..+|+. +..++.+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 111235666531 01111 12345566775 5678899999
Q ss_pred hHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 416 SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 416 Sgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
||||+ |++++++++.+|+++||||||+|||+.+...+.. ++..+.+++.|+|++||+++ +..+||+++.+.+|++..
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999 5889999999999999999999999999999999 45556666889999999998 568999999999999876
Q ss_pred ec
Q 007057 494 SL 495 (620)
Q Consensus 494 ~~ 495 (620)
+.
T Consensus 257 ~g 258 (320)
T PRK13631 257 TG 258 (320)
T ss_pred eC
Confidence 53
No 172
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.4e-25 Score=227.82 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=133.6
Q ss_pred CeEEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hhh
Q 007057 325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~ 380 (620)
.+++++|+++.|++. .+ ++||++.+| ++++|+||||||||||+|+| |+..+. .+.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 368899999999752 24 999999999 99999999999999999999 776431 112
Q ss_pred CccccCCCC---CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
..|+|+... ....+ +..++..+|+.+..++.+..||+||+ +++++++++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235666531 01111 12345667777788899999999999 589999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+...+. .+.+ .+.|+|++||+.+....|++++.+.+|++..+
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 9999999999999999999554 4554 47899999999985556999999999998765
No 173
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=5.2e-25 Score=225.06 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=132.5
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5789999999987555 999999999 99999999999999999999 775320
Q ss_pred ---HhhCccccCCCC----CCccH----------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ..+.. ++.++..+|+. ...++.++.|||||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 011245565531 01111 12335566775 467889999999999 589999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 99999999999999999999999999995555434458899999999984 468999999999988654
No 174
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=3e-25 Score=215.89 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=113.5
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
.+++++|++++| .+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...
T Consensus 3 ~~l~~~~l~~~~---~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG---AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe---eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 468899999999 33 999999999 99999999999999999999 444321 00112
Q ss_pred cccCCC-----CCCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 007057 383 YLPAKN-----HPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (620)
Q Consensus 383 ~vp~~~-----~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~al 456 (620)
|+|+.. ...++..+++... ..||+||+ +++++++++.+|+++||||||+|||+.....+.+.+
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~-----------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 147 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALS-----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI 147 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHH-----------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH
Confidence 333321 0111222222110 01999999 588999999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 457 l~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 148 -~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 148 -RELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred -HHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 445556789999999987 668999999988875
No 175
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=4.1e-25 Score=221.18 Aligned_cols=164 Identities=22% Similarity=0.300 Sum_probs=130.4
Q ss_pred eEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
+++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||+++| |+..+-
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 3678999999974 334 999999999 99999999999999999999 765320
Q ss_pred -HhhCccccCCCC--CCcc----------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 378 -SKAGLYLPAKNH--PRLP----------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~----------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+...|+|+... ..++ .+..++..+|+.+..++.+.+||+||+ +++++++++.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 112335565431 1111 123455677887888999999999999 58889999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceE
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~ 491 (620)
|+++||||||+|||+.....+...+.+ +.+ .+.|+|++||++++..+||+++.+.+|++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~-~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQK-LAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999995444 554 58999999999997789999999988764
No 176
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.4e-25 Score=225.46 Aligned_cols=168 Identities=20% Similarity=0.192 Sum_probs=131.0
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H-------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------- 377 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~------- 377 (620)
.+.++++|+++.|++..+ ++||+|.+| ++++|+||||||||||+|++ |++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 467899999999987655 999999999 99999999999999999999 77631 0
Q ss_pred ---HhhCccccCCCC-CCccHHH----------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNH-PRLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~-~~l~~~d----------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ...+..+ +++..+++. +..++.+.+|||||+ ++++++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 111235565531 0112222 233444442 346788899999999 589999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998544 4554 679999999998 5589999999999998765
No 177
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=248.93 Aligned_cols=167 Identities=15% Similarity=0.165 Sum_probs=135.5
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--H--------------------Hhh
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--~--------------------a~~ 380 (620)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+.
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 5889999999987665 999999999 99999999999999999999 87653 0 111
Q ss_pred CccccCCCC--CCccH------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 381 GLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 381 G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
..|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 236666531 11111 23356667777778899999999999 5889999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+..+..+.+. +..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 9999999999999999999994 4456666889999999988 5689999999999987654
No 178
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=2.8e-25 Score=249.16 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=136.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hhh-Cc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA-GL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~-G~ 382 (620)
.++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+. -.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 6889999999987665 999999999 99999999999999999999 776431 111 23
Q ss_pred cccCCCC--CCccHH-----------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 383 YLPAKNH--PRLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 383 ~vp~~~~--~~l~~~-----------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
|+|+... ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 6676531 112222 2346677887788999999999999 5888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|++...
T Consensus 170 ~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 170 SLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999 45556666889999999998 5689999999999998654
No 179
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=4.7e-25 Score=223.40 Aligned_cols=166 Identities=18% Similarity=0.220 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~ 386 (620)
++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||+|+| |+..+. .+...|+|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 367899999987666 999999999 99999999999999999999 765431 111235665
Q ss_pred CCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 387 KNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 387 ~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
... ...++ +++++..+++.+..++.+..||+||+ +++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 431 11111 23456667777788899999999999 5889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 443 GTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+.....+...+. .+.+. ++|+|++||+++ +..+|++++.+.+|++...
T Consensus 160 ~LD~~~~~~~~~~l~-~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 160 ALDAKVRKELRSWLR-KLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999554 45554 789999999998 5689999999999998754
No 180
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=3.2e-25 Score=219.03 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=123.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++||++.|+++.+ ++|+++.+| ++++|+||||+|||||+++| |+..+- .+...|+|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 468899999987655 999999999 99999999999999999999 765421 11123555
Q ss_pred CCCCC--CccH---------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 386 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 386 ~~~~~--~l~~---------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+.... ..++ ++.++..+|+.+..++.+.+|||||+ +++++++++.+|+++||||||+|||+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 44311 1122 23456677887778899999999999 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccce
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR 485 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~ 485 (620)
....+...+. .+.+.+.|+|++||+.. +..++++.+.
T Consensus 160 ~~~~l~~~l~-~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAMA-GHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHHH-HHHhCCCEEEEEecCchhhhhccceeEe
Confidence 9999999554 45666889999999876 6677776644
No 181
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.8e-25 Score=224.47 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
+.++|+++.|+.... ++++.|..| +.++++|||||||||+||+| ||..+- .+...|
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred eeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 578899999987665 899999999 99999999999999999999 776541 111224
Q ss_pred ccCCC--CCCccHHHH-----------------------HHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 384 LPAKN--HPRLPWFDL-----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 384 vp~~~--~~~l~~~d~-----------------------i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
|+|.. +..++++++ ++..+.+++..++++..|||||+ |++++++++-+|++|||
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 44442 123333333 45566677788999999999999 59999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
|||+++||..-+..|..-+.+...+.|.|+++||||.+ ..++||++.++.+|+++-
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 99999999999999998555544445899999999998 458999999999998764
No 182
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.3e-25 Score=215.90 Aligned_cols=153 Identities=23% Similarity=0.332 Sum_probs=114.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc-----cH----H
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PW----F 395 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l-----~~----~ 395 (620)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|++ .|.+.|.+|...+ .- .
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhH
Confidence 367899999987655 999999999 99999999999999999999 5655555442111 00 0
Q ss_pred HHHHHHcC---------Cchhhcccccc-chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-
Q 007057 396 DLILADIG---------DHQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR- 463 (620)
Q Consensus 396 d~i~~~ig---------~~~~~~~~~s~-lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~- 463 (620)
......++ ....+...+.. ||+||+ |++++++++.+|+++||||||+|+|+.....+... +..+++.
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~-l~~~~~~~ 150 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL-LKSLQAQL 150 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhc
Confidence 01111111 00112222222 999999 58899999999999999999999999999999994 4556655
Q ss_pred CcEEEEEccChhH-HhhccccceeeCc
Q 007057 464 VGLAVVTTHYADL-SCLKDKDTRFENA 489 (620)
Q Consensus 464 ~~~vli~TH~~~l-~~~~~~~~~~~~g 489 (620)
+.|+|++||+.+. ..+||+++.+.+|
T Consensus 151 ~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 151 GITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 7899999999984 4689999888776
No 183
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.7e-25 Score=223.85 Aligned_cols=166 Identities=17% Similarity=0.265 Sum_probs=130.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------------HH
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------MS 378 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------------~a 378 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+ ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4789999999987655 999999999 99999999999999999999 77641 00
Q ss_pred hhCccccCCCC--CCccHHHHH-----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 379 KAGLYLPAKNH--PRLPWFDLI-----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d~i-----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
+...|+|+... ...++.+++ +..+|+. +..++.+.+|||||+ |+++++++
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11236666531 122333332 3334542 246788999999999 58999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFL-ELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 99999999999999999999999999554 4554 789999999998 4589999999999988654
No 184
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8e-25 Score=224.54 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=130.6
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--H---------------------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------- 377 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--~--------------------- 377 (620)
+..++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+ .
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 457899999999987655 999999999 99999999999999999999 77631 0
Q ss_pred ---HhhCccccCCCCC-CccHHH----------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+.-.|+|+.... ..++++ .++..+++. +.+++.+.+|||||+ ++++++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 0112355655310 001111 123344543 245788899999999 588889
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999854 44555 689999999998 5689999999999998765
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=4e-25 Score=223.82 Aligned_cols=159 Identities=20% Similarity=0.258 Sum_probs=122.3
Q ss_pred eecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc-CCCC--
Q 007057 334 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP-AKNH-- 389 (620)
Q Consensus 334 ~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp-~~~~-- 389 (620)
+.|+.+.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+| +...
T Consensus 29 ~~~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 44555555 999999999 99999999999999999999 776431 11123554 3211
Q ss_pred CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 390 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 390 ~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
..++.. +.++..+|+.+..++.+.+||+||+ ++.++++++.+|+++||||||+|||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 112221 2234556777778889999999999 588889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999555433344789999999998 568999999999998754
No 186
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.7e-25 Score=227.99 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=131.2
Q ss_pred CCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--H--------------H------
Q 007057 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M------ 377 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~--------------~------ 377 (620)
|+.++.++||+++|++..+ ++||+|.+| ++++|+||||||||||||+| |+.. + +
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 4457899999999987555 999999999 99999999999999999999 8642 1 0
Q ss_pred ----HhhCccccCCCCCC-ccHHH----------------------HHHHHcCC----chhhccccccchHHHH-HHHHH
Q 007057 378 ----SKAGLYLPAKNHPR-LPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 378 ----a~~G~~vp~~~~~~-l~~~d----------------------~i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i 425 (620)
.+...|+|+..... .++.+ .++..+|+ .+..++.+++|||||+ |++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 11123666653110 12222 22333443 3456788999999999 58899
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+.+.+ ..+.. +.++|++||+.+ +..+|++++.+.+|++..+
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L-~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLI-QELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999954 44554 579999999998 4689999999999998754
No 187
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.8e-25 Score=233.43 Aligned_cols=167 Identities=21% Similarity=0.182 Sum_probs=133.3
Q ss_pred eEEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------
Q 007057 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------- 376 (620)
.++++||++.|+.. .+ ++||+|.+| ++++|+||||||||||+++| |++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 47899999999752 23 999999999 99999999999999999999 87741
Q ss_pred -HH----hhCccccCCCC----CCccH----------------------HHHHHHHcCCch---hhccccccchHHHH-H
Q 007057 377 -MS----KAGLYLPAKNH----PRLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (620)
Q Consensus 377 -~a----~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~~---~~~~~~s~lSgg~k-r 421 (620)
+. +...|+||+.. ..+.+ ..+++..+|+.+ .+++.+.+|||||+ |
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 01 12357777642 11111 123456667753 46789999999999 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
++++++++.+|++||+||||+|||+..+..+... +..+.+ .|.|+|++|||+++ ..+||++..+.+|++...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~l-L~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL-LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8888999999999999999999999999999994 455654 58899999999985 489999999999998765
No 188
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.7e-25 Score=222.73 Aligned_cols=166 Identities=20% Similarity=0.236 Sum_probs=129.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh---HH-----------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL----------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli---~~----------------------- 376 (620)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+. .+
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5789999999987655 999999999 99999999999999999999 652 11
Q ss_pred HHhhCccccCCCCC-CccHHH----------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+...|+|+.... ..++.+ .++..+|+. +..++.+.+|||||+ |+++++++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 01123456665311 012222 234445553 245778899999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999554 4554 689999999998 5589999999999998654
No 189
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=6.6e-25 Score=232.67 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=133.2
Q ss_pred CeEEEeeeeeecCC-------------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------
Q 007057 325 SEMTVGSLSKGISD-------------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------ 376 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-------------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------ 376 (620)
..++++||++.|+. ..+ ++||+|.+| ++++|+|+||||||||+|+| |+..+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 46889999999962 223 999999999 99999999999999999999 77643
Q ss_pred ----------HHhhCccccCCCC----CCccHHH-----------------------HHHHHcCCc-hhhccccccchHH
Q 007057 377 ----------MSKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGH 418 (620)
Q Consensus 377 ----------~a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~s~lSgg 418 (620)
..+...|+||+.. ..+++.+ +++..+|+. +..++.+..||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 0112346777641 1222222 234556663 4578999999999
Q ss_pred HH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 419 ~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
|+ |++++++++.+|++||+||||+|||+..+..+.. ++..+.+ .+.|+|++|||+++. .+|+++..+.+|++...
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99 5888899999999999999999999999999999 4555655 488999999999855 78999999999998764
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=6e-25 Score=245.99 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=135.2
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
+++++|++++|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999999987655 999999999 99999999999999999999 776431 11123
Q ss_pred cccCCCC--CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+... ..+++ +..++..+|+.+..++++++|||||+ +++++++++.+|++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 6666431 01111 22346667777778899999999999 58888999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+.. ++..+.+.+.|+|++|||.+ +..+||+++.+.+|++...
T Consensus 163 llLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999998 55556666889999999998 5689999999999988653
No 191
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.9e-25 Score=218.76 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=122.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------HhhCccccC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA 386 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------a~~G~~vp~ 386 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||++++ |+..+- .....|+|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4688999999987655 999999999 99999999999999999999 765321 111234543
Q ss_pred CCC--CCccH-----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 387 KNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 387 ~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
... ...++ ..+++..+|+.+..++++.+|||||+ |++++++++.+|+++||||||+|+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 321 11122 23345666777777889999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
.....+...+ ..+.+.+.|+|++||+.+...- ++.+.+.
T Consensus 161 ~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 161 AAVALFAELI-RAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHH-HHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 9999999854 4455568899999999875443 5554443
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=237.92 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=122.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhCccccCCCC--CCccHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKNH--PRLPWF 395 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G~~vp~~~~--~~l~~~ 395 (620)
++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|+... ..+++.
T Consensus 46 ~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~ 124 (400)
T PRK10070 46 DASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL 124 (400)
T ss_pred eEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHH
Confidence 999999999 99999999999999999999 776431 012346777641 111221
Q ss_pred ---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHH
Q 007057 396 ---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (620)
Q Consensus 396 ---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~ 453 (620)
++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..+..+.
T Consensus 125 enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 125 DNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 2345667888888999999999999 588999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 454 ~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
..+.+...+.+.|+|++||+.+ ...+||+++.+.+|++...
T Consensus 205 ~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 9555433345789999999998 5589999999999998654
No 193
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.9e-25 Score=223.30 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=129.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5789999999987655 999999999 99999999999999999999 776420
Q ss_pred -HhhCccccCCCC--CCccHHHH-----------------------HHHHcCCc----hhhccccccchHHHH-HHHHHH
Q 007057 378 -SKAGLYLPAKNH--PRLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d~-----------------------i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ..+++.++ ++..+|+. ...++.+.+|||||+ |+++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 011235555531 11222222 23334432 345778899999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+||++..+.+|++...
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999995554 554 589999999998 5689999999999998754
No 194
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.1e-25 Score=220.14 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=125.3
Q ss_pred eEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
.++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||++ |+..+. .....
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4789999999974 334 999999999 99999999999999999999 765431 11123
Q ss_pred cccCCCCC-CccHHHH---------------HHHHcCC-----------chhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHP-RLPWFDL---------------ILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~-~l~~~d~---------------i~~~ig~-----------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+.... ..++.++ .+..++. .....+.+..||+||+ ++.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 55655310 0011111 1122222 2233456789999999 58899999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+..+..+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999954 44554 7899999999986667999999999988654
No 195
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=224.90 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=131.3
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----H------------------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----~------------------ 377 (620)
...|+++||++.|++..+ ++||+|.+| ++++|+||||||||||||+| |++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 357999999999987655 999999999 99999999999999999999 87642 0
Q ss_pred ---HhhCccccCCCCC-CccHHH-----------------------HHHHHcCCch----hhccccccchHHHH-HHHHH
Q 007057 378 ---SKAGLYLPAKNHP-RLPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 378 ---a~~G~~vp~~~~~-~l~~~d-----------------------~i~~~ig~~~----~~~~~~s~lSgg~k-rl~~i 425 (620)
.+...|+|+.... ..++.+ .++..+|+.+ ..++.+.+|||||+ |++++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 1112356665311 012222 2334445532 35678899999999 58899
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEEL-IDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999994 455555 679999999998 5589999999999998654
No 196
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=8.1e-25 Score=212.01 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=116.8
Q ss_pred EEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc-----HH-H
Q 007057 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-----WF-D 396 (620)
Q Consensus 327 l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~-----~~-d 396 (620)
++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||++ +|...|..|...+. .. .
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLL--------TGDLKPQQGEITLDGVPVSDLEK 71 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hccCCCCCCEEEECCEEHHHHHH
Confidence 3678999999764 34 999999999 99999999999999999999 55544444421110 00 0
Q ss_pred HHHHHcCC-c-------hhhccc-cccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 007057 397 LILADIGD-H-------QSLEQN-LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (620)
Q Consensus 397 ~i~~~ig~-~-------~~~~~~-~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~ 466 (620)
.....++. . ..+... +.+||+||+ ++.++++++.+|+++||||||+|||+.....+.+.+ ..+. ++.|
T Consensus 72 ~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~-~~~t 149 (178)
T cd03247 72 ALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL-KDKT 149 (178)
T ss_pred HHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc-CCCE
Confidence 00011110 0 001111 789999999 588899999999999999999999999999999955 4454 4789
Q ss_pred EEEEccChhHHhhccccceeeCceEEE
Q 007057 467 AVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 467 vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
+|++||+.+....|++++.+.+|.+..
T Consensus 150 ii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 150 LIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999998666799999999988754
No 197
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=2.8e-25 Score=219.32 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=118.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HHH-------------------Hh-hC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SK-AG 381 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~~-------------------a~-~G 381 (620)
+.++|++++|++..+ ++||++.+| ++++|+||||||||||+|++ |+. .+- .+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 357899999987555 999999999 99999999999999999999 542 110 00 01
Q ss_pred ccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 007057 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (620)
Q Consensus 382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l 460 (620)
.|+|+... . +..+...+.+......||+||+ +++++++++.+|+++||||||+|||+.....+...+. .+
T Consensus 80 ~~v~q~~~-~-------~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~ 150 (200)
T cd03217 80 FLAFQYPP-E-------IPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KL 150 (200)
T ss_pred EEeecChh-h-------ccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HH
Confidence 12232210 0 0000111222344468999999 5889999999999999999999999999999998555 46
Q ss_pred hcCCcEEEEEccChhHHh--hccccceeeCceEEEe
Q 007057 461 RDRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS 494 (620)
Q Consensus 461 ~~~~~~vli~TH~~~l~~--~~~~~~~~~~g~~~~~ 494 (620)
.+.+.|+|++||+++... +|++++.+.+|.+...
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 666789999999998654 7999999999988654
No 198
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.2e-25 Score=214.31 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=120.9
Q ss_pred eEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--H---------------HHhhC
Q 007057 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L---------------MSKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~---------------~a~~G 381 (620)
.++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||++ |+.. + ..+..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 5789999999964 344 999999999 99999999999999999999 5532 1 01112
Q ss_pred ccccCCCC--CCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 382 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 382 ~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
.|+|+... ..+++.+++.... . ...|||||+ +++++++++.+|+++|+||||+|+|+.....+... +.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~----~----~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~-l~ 152 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA----L----LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF-LK 152 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH----H----HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH-HH
Confidence 34555421 1234444442110 0 118999999 58899999999999999999999999999999994 55
Q ss_pred HHhcCCcEEEEEccChh--HHhhccccceeeC-ceEEE
Q 007057 459 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF 493 (620)
Q Consensus 459 ~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~-g~~~~ 493 (620)
.+.+.+.|+|++||+.+ +..+||+++.+.+ |++.+
T Consensus 153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 56666889999999987 3688999999988 88765
No 199
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.4e-25 Score=232.47 Aligned_cols=168 Identities=16% Similarity=0.112 Sum_probs=133.6
Q ss_pred CeEEEeeeeeecCC----------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------
Q 007057 325 SEMTVGSLSKGISD----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~----------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------- 377 (620)
.+|+++||++.|+. ..+ ++||+|.+| ++++|+||||||||||+++| |++.+-
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 36889999999962 223 999999999 99999999999999999999 776420
Q ss_pred --------HhhCccccCCCC----CCccH----------------------HHHHHHHcCCc-hhhccccccchHHHH-H
Q 007057 378 --------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 421 (620)
Q Consensus 378 --------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-r 421 (620)
.+...|+|+... ..+.+ +.+++..+|+. +..++.+..|||||+ |
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 112246776641 11111 22346667775 467899999999999 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
++++++++.+|++||+||||+|||+..+..+.+.+. .+.+ .|.|+|++|||+.+. .+||++..+.+|++...
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~-~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM-DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 888999999999999999999999999999999554 4554 588999999999955 68999999999998765
No 200
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=222.58 Aligned_cols=167 Identities=16% Similarity=0.247 Sum_probs=130.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--H--------------H--------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M-------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~--------------~-------- 377 (620)
+.++++|++++|++..+ ++||+|.+| ++++|+||||||||||||+| |+.. + .
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 46899999999987655 999999999 99999999999999999999 8753 1 0
Q ss_pred --HhhCccccCCCC--CCccHHH----------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHH
Q 007057 378 --SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+... ...++.+ .++..+|+. +..++.+.+||+||+ ++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 111235666531 1112222 223344542 245678899999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+... ++.+.+ +.|+|++||+.+ +..+||++..+.+|++...
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEEL-IEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999984 555655 579999999998 4589999999999998654
No 201
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=221.75 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=129.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------------- 376 (620)
.+.++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5789999999987555 999999999 99999999999999999999 76431
Q ss_pred HHhhCccccCCCC-CCccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+...|+|+... ...+..+++ +..++.. +..++++.+|||||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 0111236666531 112333332 1223321 234678899999999 58999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+..+..+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELI-QELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998855 44554 689999999998 5688999999999998765
No 202
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.1e-25 Score=245.50 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=135.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------H-hhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a-~~G~ 382 (620)
+++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +...
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5789999999987665 999999999 99999999999999999999 776430 1 1124
Q ss_pred cccCCCC--CCccH----------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 383 YLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 383 ~vp~~~~--~~l~~----------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
|+|+... ..+++ +.+++..+|+.+..++++++|||||+ |++++++++.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 6666531 11111 12345667777778899999999999 58888999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|++.+.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999 55556666889999999988 5589999999999988654
No 203
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=7.1e-25 Score=246.52 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=131.4
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HH------H------------------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL------M------------------ 377 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~------~------------------ 377 (620)
++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+ .
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 468899999987655 999999999 99999999999999999999 875 11 0
Q ss_pred ----------------------------HhhCccccCCCC---CCccHH---------------------HHHHHHcCCc
Q 007057 378 ----------------------------SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH 405 (620)
Q Consensus 378 ----------------------------a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~ 405 (620)
.+...|+|+... ..++.. +.++..+|+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 011235566411 111221 2345667777
Q ss_pred hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhcccc
Q 007057 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (620)
Q Consensus 406 ~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~ 483 (620)
+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.|.|||++|||.+ +..+|+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 778899999999999 5888999999999999999999999999999999544433445889999999998 55899999
Q ss_pred ceeeCceEEE
Q 007057 484 TRFENAATEF 493 (620)
Q Consensus 484 ~~~~~g~~~~ 493 (620)
+.+.+|++..
T Consensus 240 ~~l~~G~i~~ 249 (520)
T TIGR03269 240 IWLENGEIKE 249 (520)
T ss_pred EEEeCCEEee
Confidence 9999998764
No 204
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=5.6e-25 Score=235.19 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=127.6
Q ss_pred ecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------H----HhhCccccCCC
Q 007057 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M----SKAGLYLPAKN 388 (620)
Q Consensus 335 ~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~----a~~G~~vp~~~ 388 (620)
.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ + .+...|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3454444 999999999 99999999999999999999 77643 1 22345777764
Q ss_pred C--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 389 H--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 389 ~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
. ..+++. .+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 112222 2346677888889999999999999 588999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||..+..+.+.+.+...+.+.|+|++|||++ ...+||++..+.+|++...
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 9999999999665533345889999999998 5689999999999998654
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=222.24 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=129.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--H------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L------------------------ 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~------------------------ 376 (620)
+++++||+++|+++.+ ++||++.+| ++++|+|||||||||||+++ |+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 5789999999987655 999999999 99999999999999999999 7632 1
Q ss_pred HHhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
+.+...|+|+.... ..++.+++ +..++.. +..++.+.+||+||+ ++++++++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 01123356665311 12333332 2223321 235678899999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETL-LGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999854 44554 589999999997 5689999999999998754
No 206
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=7.6e-25 Score=234.56 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=130.8
Q ss_pred eeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------HhhCccccC
Q 007057 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (620)
Q Consensus 331 ~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~G~~vp~ 386 (620)
||+++|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 78999987666999999999 99999999999999999999 776431 111235565
Q ss_pred CCC--CCccH-------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 387 KNH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 387 ~~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 531 11222 23345667888888999999999999 589999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+..+..+...+.+ +.+ .+.|+|++||+++ +..+||++..+.+|++...
T Consensus 163 D~~~~~~l~~~L~~-l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 163 DDPRKYEILPYLER-LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CHHHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999995544 554 4789999999998 5578999999999998654
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=7.8e-25 Score=221.51 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=125.2
Q ss_pred EEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
++++|+++.|++ .++ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 367899999963 334 999999999 99999999999999999999 776421 11224
Q ss_pred cccCCCCC-CccHHHHH---------------HHHc-----------CCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~-~l~~~d~i---------------~~~i-----------g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+.... ..++.+++ +... +....+++++.+|||||+ +++++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 66665310 11222221 1112 222234567899999999 58889999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554 4554 7899999999986667999999999998754
No 208
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=1.1e-24 Score=221.75 Aligned_cols=165 Identities=22% Similarity=0.248 Sum_probs=123.9
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HHH-------------------H-hhC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~~-------------------a-~~G 381 (620)
++++||++.|+++.+ ++|+++.+| ++++|+||||||||||||++ |+. .+. . ..-
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 678999999987655 999999999 99999999999999999999 774 220 0 011
Q ss_pred ccccCCCCCCcc-------------------------------HHHHHHHHcCCc-hhhccccc-cchHHHH-HHHHHHH
Q 007057 382 LYLPAKNHPRLP-------------------------------WFDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (620)
Q Consensus 382 ~~vp~~~~~~l~-------------------------------~~d~i~~~ig~~-~~~~~~~s-~lSgg~k-rl~~i~~ 427 (620)
.|+|+... .++ .++.++..+++. +..++.++ .|||||+ +++++++
T Consensus 81 ~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 81 FMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred EEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 24444421 000 011222333442 23445554 7999999 5889999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hh-ccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~-~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+.. ++..+++.++|+|++||++++. .+ ++++..+.+|++...
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999998 5555676688999999999855 44 788888999988654
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.2e-25 Score=210.32 Aligned_cols=150 Identities=21% Similarity=0.317 Sum_probs=110.4
Q ss_pred EEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc---H----H
Q 007057 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---W----F 395 (620)
Q Consensus 327 l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~---~----~ 395 (620)
++++|+++.|++. .+ ++||++.+| ++++|+||||+|||||+|++ +|...|.+|...+. . .
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCH
Confidence 3678999999764 34 999999999 99999999999999999999 55554544421110 0 0
Q ss_pred HHHHHHcCC--------chhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 007057 396 DLILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (620)
Q Consensus 396 d~i~~~ig~--------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~ 466 (620)
......++. ...+...+ ||+||+ +++++++++.+|+++||||||+|||+.....+... +..+.+ +.|
T Consensus 72 ~~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~-~~t 147 (171)
T cd03228 72 ESLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA-LRALAK-GKT 147 (171)
T ss_pred HHHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH-HHHhcC-CCE
Confidence 000011110 00111111 999999 58889999999999999999999999999999994 445554 689
Q ss_pred EEEEccChhHHhhccccceeeCc
Q 007057 467 AVVTTHYADLSCLKDKDTRFENA 489 (620)
Q Consensus 467 vli~TH~~~l~~~~~~~~~~~~g 489 (620)
+|++||+.+....|+++..+.+|
T Consensus 148 ii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 148 VIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred EEEEecCHHHHHhCCEEEEEcCC
Confidence 99999999855459998888776
No 210
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.1e-25 Score=220.86 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=125.2
Q ss_pred EEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCc
Q 007057 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (620)
Q Consensus 327 l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~ 382 (620)
++++|++++|++. .+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3678999999764 44 999999999 99999999999999999999 776431 11223
Q ss_pred cccCCCC-CCccHHHHH------------------------HHHc--CCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~-~~l~~~d~i------------------------~~~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+... ...++.+++ +..+ +.....++.+.+||+||+ ++.++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 5565431 011222222 1111 233334567889999999 58899999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+.. ++..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 99999999999999999998 4555554 7899999999986556999999999988643
No 211
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=223.44 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=130.9
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------------- 376 (620)
..++++||+++|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 46889999999987665 999999999 99999999999999999999 77631
Q ss_pred -HHhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHH
Q 007057 377 -MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 377 -~a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
..+...|+|+.... ..++.+++ +..+++. +.+++++.+||+||+ +++++++
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 01123466665311 11222222 3344442 346788999999999 5999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+||++..+.+|++...
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 178 IAVKPDILLMDEPASALDPISTMQLEETM-FELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999854 45554 689999999998 5589999999999998754
No 212
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=7.5e-25 Score=216.19 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=121.9
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~vp 385 (620)
+.++|++++|++..+ ++||++.+| ++++|+||||||||||+++| |+..+ ..+.-.|+|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 678999999987666 999999999 99999999999999999999 77532 011123555
Q ss_pred CCCC--CCccHH----------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 386 AKNH--PRLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 386 ~~~~--~~l~~~----------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
+... ...++. +.++..+++.+..++++..||+||+ |++++++++.+|+++||||||+|||+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 5431 112222 3345556666667888999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccc
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~ 483 (620)
.....+...+.+ +.+.+.|+|++||+.+...-||..
T Consensus 161 ~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 161 LSLLTIITKIQE-HRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHHH-HHHcCCEEEEEeCCchhccccchh
Confidence 999999995554 566688999999998866666643
No 213
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=220.58 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=130.2
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------HHhh
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------~a~~ 380 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+ ..+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 3678999999987555 999999999 99999999999999999999 77521 0111
Q ss_pred CccccCCCCC-CccHH-----------------------HHHHHHcCCc----hhhccccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHP-RLPWF-----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~-----------------------d~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
..|+|+.... ..++. .+++..+++. +..++.+..||+||+ +++++++++.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2466665310 01111 2344555663 345778899999999 58899999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKE-LSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 999999999999999999999885544 554 789999999998 5689999999999998754
No 214
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=220.94 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=129.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------------- 376 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 5789999999987655 999999999 99999999999999999999 76541
Q ss_pred HHhhCccccCCCC-CCccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+...|+|+... ...+..+++ +..+|+. ...++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 0112345665531 012222222 2233432 235778899999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEE-LSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHH-Hhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999985554 554 689999999998 6789999999999998754
No 215
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=1.7e-24 Score=212.78 Aligned_cols=158 Identities=24% Similarity=0.311 Sum_probs=121.0
Q ss_pred eEEEeeeeeecCC------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HHH----------------H
Q 007057 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM----------------S 378 (620)
Q Consensus 326 ~l~~~~l~~~y~~------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~~----------------a 378 (620)
.++++||++.|++ ..+ ++|+++.+| ++++|+||||+|||||+|+| |+. .+. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4789999999975 445 999999999 99999999999999999999 665 321 0
Q ss_pred hhCccccCCCC--CCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 007057 379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (620)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~a 455 (620)
+...|+|+... ..+++.+++.... ...+||+||+ +++++++++.+|+++||||||+|||+.....+...
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 153 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 11224444421 1223344332110 1128999999 58899999999999999999999999999999985
Q ss_pred HHHHHhcCCcEEEEEccChh--HHhhccccceeeCceEEE
Q 007057 456 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 456 ll~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~g~~~~ 493 (620)
+..+.+.+.|+|++||+.+ +..+||++..+.+|++..
T Consensus 154 -l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 154 -LRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred -HHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 4556666889999999985 557899999999998754
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2e-24 Score=223.73 Aligned_cols=172 Identities=20% Similarity=0.264 Sum_probs=133.0
Q ss_pred CCCCCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------
Q 007057 320 SDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (620)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------- 377 (620)
++.....+.++||+++|+++.+ ++||+|.+| ++++|+||||+|||||||+| |+..+.
T Consensus 15 ~~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 15 VDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred ccccCcEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 3333457899999999987665 999999999 99999999999999999999 876420
Q ss_pred ------HhhCccccCCCCC-CccHHHH----------------------HHHHcCCch----hhccccccchHHHH-HHH
Q 007057 378 ------SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 ------a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~~----~~~~~~s~lSgg~k-rl~ 423 (620)
.....|+|+.... ..+..++ ++..+++.. .+++.+.+|||||+ |++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred chhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 1112366665310 1122222 233444432 35677899999999 589
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-IRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999984 455555 489999999998 5689999999999998654
No 217
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=1.3e-24 Score=224.19 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=131.6
Q ss_pred eEEEeeeeeecCC---------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------
Q 007057 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------- 377 (620)
+++++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 4788999999973 444 999999999 99999999999999999999 775420
Q ss_pred ------HhhCccccCCCC----CCccH----------------------HHHHHHHcCCc-hhhccccccchHHHH-HHH
Q 007057 378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 ------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~ 423 (620)
.+...|+|+... ...+. ++.++..+|+. +..++.+..||+||+ +++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 112335665531 01111 22345566775 567889999999999 588
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999998555433334789999999998 4579999999999988654
No 218
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=230.53 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=131.7
Q ss_pred eEEEeeeeeecC----Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------
Q 007057 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~----~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------- 376 (620)
.|+++||+++|+ ...+ ++||+|.+| ++++|+||||||||||+|+| |+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 478999999993 3333 999999999 99999999999999999999 88631
Q ss_pred -HH----hhCccccCCCCC----CccH---------------------------HHHHHHHcCCch---hhccccccchH
Q 007057 377 -MS----KAGLYLPAKNHP----RLPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG 417 (620)
Q Consensus 377 -~a----~~G~~vp~~~~~----~l~~---------------------------~d~i~~~ig~~~---~~~~~~s~lSg 417 (620)
+. +...|+||.... .+++ +.+++..+|+.+ ..++.+..|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 00 113477776421 1111 123355566653 35788999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 418 g~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
||+ |++++++++.+|++||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||+++. .+||++..+.+|++...
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 5888899999999999999999999999999999 4555665 488999999999855 89999999999998765
No 219
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.3e-24 Score=219.78 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCC
Q 007057 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (620)
Q Consensus 327 l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~ 387 (620)
|.++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ |+..+- .+.-.++|+.
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 357899999976544 999999999 99999999999999999999 665431 1112355554
Q ss_pred CCC--CccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 388 ~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
... .+++ +.+++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 311 1111 12345567777888999999999999 58999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 444 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+.+...+...+.+ +.. .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 LD~~~~~~l~~~l~~-~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 160 LDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CCHHHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999995554 544 4889999999998 5679999999999988654
No 220
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=9.5e-25 Score=219.30 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=125.8
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hh
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~ 379 (620)
+.++++|+++.|++ ..+ ++|+++.+| ++++|+||||||||||++++ |+..+- .+
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 57899999999974 234 999999999 99999999999999999999 775421 11
Q ss_pred hCccccCCCCC-CccHHH------------------------HHHHHc--CCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHP-RLPWFD------------------------LILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d------------------------~i~~~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
...|+|+.... ..++.+ .++..+ |+...++..+.+|||||+ +++++++++.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 12355554310 001111 123334 556667888999999999 58999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCce
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+++....|++++.+.+|+
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 999999999999999999999995554 555 589999999998666699998888775
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=220.73 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=129.2
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--HH---------------------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM--------------------- 377 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~~--------------------- 377 (620)
+.+++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+.. +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 346889999999987655 999999999 99999999999999999999 7642 10
Q ss_pred ---HhhCccccCCCCC-CccHHHHH----------------------HHHcCC----chhhccccccchHHHH-HHHHHH
Q 007057 378 ---SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 378 ---a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
.+...|+|+.... ..++.+++ +..++. .+..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 0112356665310 11222222 122232 2345678899999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+. ..+|++++.+.+|++..+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLL-ELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998544 4555 4799999999984 579999999999998765
No 222
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-24 Score=224.24 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=132.6
Q ss_pred eEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hhh
Q 007057 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~ 380 (620)
.++++||++.|++. .+ ++||++.+| ++++|+||||||||||+++| |+..+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 57899999999742 23 999999999 99999999999999999999 776431 111
Q ss_pred CccccCCC---CCCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 381 GLYLPAKN---HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 381 G~~vp~~~---~~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
..|+|+.. ....++.+ .++..+|+.+..++++.+|||||+ +++++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 23666653 11122222 334556777778889999999999 588899999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+...+ ..+.+ .|.|+|++||+++....|++++.+.+|++...
T Consensus 163 llDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999954 45655 48899999999986667999999999998654
No 223
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=244.30 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=133.0
Q ss_pred eEEEeeeeeecC---Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-H--------------------H
Q 007057 326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (620)
Q Consensus 326 ~l~~~~l~~~y~---~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-~--------------------a 378 (620)
.++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 578899999993 3344 899999999 99999999999999999999 87652 0 0
Q ss_pred hhCccccCCC-----CCCccH--------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHH
Q 007057 379 KAGLYLPAKN-----HPRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 379 ~~G~~vp~~~-----~~~l~~--------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i 425 (620)
+.-.|+|+.. ...+++ ++.++..+++. +..++++.+|||||+ |+.++
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 1124666652 011111 22345667775 467889999999999 58888
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+.. ++..+.+.|.|||++|||++ +..+||+++.+.+|++..+
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999 55557777889999999998 5689999999999998654
No 224
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=1.5e-24 Score=208.07 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=114.2
Q ss_pred EEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC-CCcc
Q 007057 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH-PRLP 393 (620)
Q Consensus 327 l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~-~~l~ 393 (620)
++++|+++.|++ +.+ ++|+++.+| ++++|+||||||||||++++ |++.+-+ +...|+|+... ...+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccccc
Confidence 357899999953 344 999999999 99999999999999999999 5554311 01124454431 1123
Q ss_pred HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 007057 394 WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 394 ~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH 472 (620)
..+++.. + ....||+||+ |++++++++.+|+++||||||+|||+.....+.+.+.+ + +.|+|++||
T Consensus 80 v~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~-~---~~tiiivsh 146 (166)
T cd03223 80 LREQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE-L---GITVISVGH 146 (166)
T ss_pred HHHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH-h---CCEEEEEeC
Confidence 3333321 0 5789999999 58999999999999999999999999999999885544 3 589999999
Q ss_pred ChhHHhhccccceeeCc
Q 007057 473 YADLSCLKDKDTRFENA 489 (620)
Q Consensus 473 ~~~l~~~~~~~~~~~~g 489 (620)
+.++..+||+++.+.++
T Consensus 147 ~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 147 RPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ChhHHhhCCEEEEEcCC
Confidence 99877889988887654
No 225
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.8e-25 Score=209.77 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=134.2
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh----
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA---- 380 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~---- 380 (620)
++++||+|+||++.| ++|+.+++| .++.|+|||||||||||.++ .|+.. +|+.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 678999999999887 999999999 99999999999999999999 34321 2221
Q ss_pred ------------------CccccCCCCC---CccHHHHHHHHcCCchhhccccccchHHHHHHHHH-HHhcCCCcEEEEc
Q 007057 381 ------------------GLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI-LELVSRESLVLID 438 (620)
Q Consensus 381 ------------------G~~vp~~~~~---~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i-~~l~~~~~LlLLD 438 (620)
|-|.-..|.. ....+++.+..+++.+..++.+.+|||||+|++++ +.++++.+.++||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 1121111100 00135667888899999999999999999987777 5589999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 439 EIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
||.++||......++. +++.+. +.|.|+++|-||..++ .++|+++.++||++...
T Consensus 161 EPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 161 EPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred CcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 9999999999999999 555555 5699999999999976 79999999999998764
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=1.7e-24 Score=216.65 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=126.7
Q ss_pred eEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhC
Q 007057 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G 381 (620)
.++++|++++|++ +.+ ++||++.+| ++++|+||||||||||||++ |+..+. .+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 4789999999964 234 999999999 99999999999999999999 665321 1122
Q ss_pred ccccCCCCC-CccHHH--------------HHHHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 382 LYLPAKNHP-RLPWFD--------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d--------------~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
.|+|+.... ..++.+ ..+..+++.+.+ +..++.||+||+ +++++++++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 356655310 011222 233445554444 368899999999 58889999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+.....+.+.+. .+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIR-EAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 99999999999999999999544 4554 5899999999986666999999999987643
No 227
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=221.70 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=127.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H---------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~--------- 377 (620)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+ +
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4789999999987655 999999999 99999999999999999999 77632 0
Q ss_pred -HhhCccccCCCC--CCccHHHH----------------------HHHHcCC----chhhccccccchHHHH-HHHHHHH
Q 007057 378 -SKAGLYLPAKNH--PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d~----------------------i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+... ...++.++ ++..+|+ .+..++.+.+|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 011234555421 11222222 2334454 2456788899999999 5999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee------CceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~------~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999998854 44554 589999999998 568999998886 6777654
No 228
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=219.93 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=129.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----H--------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----~-------------------- 377 (620)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 5689999999987655 999999999 99999999999999999999 77532 0
Q ss_pred -HhhCccccCCCC-CCccHHHH----------------------HHHHcCC----chhhccccccchHHHH-HHHHHHHh
Q 007057 378 -SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 -a~~G~~vp~~~~-~~l~~~d~----------------------i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+... ...+..++ ++..+|+ .+..++++..||+||+ ++++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111235665531 01222222 2333443 2345778999999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~-~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMV-ELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999999999988544 4555 589999999998 5689999999999998754
No 229
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=219.87 Aligned_cols=166 Identities=18% Similarity=0.251 Sum_probs=128.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++||++.|+++.+ ++||++.+| ++++|+||||+|||||+|+| |+..+-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4788999999987665 999999999 99999999999999999999 775321
Q ss_pred -HhhCccccCCCC--CCccHHHHHH----------------------HHcCC----chhhccccccchHHHH-HHHHHHH
Q 007057 378 -SKAGLYLPAKNH--PRLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d~i~----------------------~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+... ...++.+++. ..++. .+..++++++|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 011235555531 1123333331 11221 1234678899999999 5999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+... ++.+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDL-MTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999994 455654 689999999998 5579999999999998754
No 230
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=219.84 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=128.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H---------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~--------- 377 (620)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||+|+| |+... .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 5789999999987655 999999999 99999999999999999999 77641 0
Q ss_pred -HhhCccccCCCC-CCccHHHH----------------------HHHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 378 -SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 -a~~G~~vp~~~~-~~l~~~d~----------------------i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+... ...++.++ ++..+++. +..++.+.+|||||+ ++++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 011235555431 01122222 23334542 345788999999999 58889999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLME-LKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHH-HHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999999999999999985554 554 589999999998 5688999999999998654
No 231
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=1.5e-24 Score=219.61 Aligned_cols=165 Identities=14% Similarity=0.116 Sum_probs=123.4
Q ss_pred EEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhC
Q 007057 327 MTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G 381 (620)
++++|+++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+..
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 367899999964 233 999999999 99999999999999999999 665321 1112
Q ss_pred ccccCCCCC-CccHHHHH---------------HHHcC-----------CchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i---------------~~~ig-----------~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+|+.... ..++.+++ ....+ .....+..+..|||||+ ++.++++++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 355554310 11222221 11112 22234556789999999 5888899999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+..+..+...+ ..+. .+.++|++||+.+...+||+++.+.+|.+..+
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l-~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEAL-DRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHH-HHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999954 4455 57899999999986668999999999988654
No 232
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.1e-24 Score=243.79 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--H--------------------HhhC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKAG 381 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--~--------------------a~~G 381 (620)
++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+ - .+.-
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 678999999987655 999999999 99999999999999999999 87652 0 0112
Q ss_pred ccccCCCC--CCccHH-------------------------HHHHHHcCCchhh-ccccccchHHHH-HHHHHHHhcCCC
Q 007057 382 LYLPAKNH--PRLPWF-------------------------DLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 382 ~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~-~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
.|+|+... ..+++. +.++..+|+.+.. ++++++|||||+ |++++++++.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 36666531 111222 2344555665443 567999999999 588889999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+.+ ++..+.+.|.|+|++|||.+ +..+||+++.+.+|++...
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999 55556777889999999998 5689999999999987643
No 233
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=1e-24 Score=214.86 Aligned_cols=147 Identities=23% Similarity=0.248 Sum_probs=116.3
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------HhhCcccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~G~~vp 385 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+- .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 467899999987665 999999999 99999999999999999999 775421 11123556
Q ss_pred CCCC--CCccH-----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 007057 386 AKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (620)
Q Consensus 386 ~~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD 445 (620)
+... ..+++ +..++..+|+.+..++.+.+||+||+ +++++++++.+|+++||||||+|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 5431 11122 22345667777778899999999999 5888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
+.....+...+.+ +.+.+.|+|++||+..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence 9999999985554 5566889999999873
No 234
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=237.69 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=130.0
Q ss_pred eEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCc--------cccCCC--C
Q 007057 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--------YLPAKN--H 389 (620)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~--------~vp~~~--~ 389 (620)
.++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .|. +++... .
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~~i~~~~~l~ 97 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAALIAISSGLN 97 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEeeeEEeccccC
Confidence 67899999999763 33 999999999 99999999999999999999 655431 110 000000 0
Q ss_pred CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 390 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 390 ~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
..+++. +.++..+++.+.+++.+.+|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 011111 2345567777788999999999999 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
....+...+ ..+.+.|+|+|++||+++ +..+||+++.+.+|++...
T Consensus 178 sr~~LlelL-~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 178 FTKKCLDKM-NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999854 446666889999999998 5688999999999998755
No 235
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-24 Score=223.40 Aligned_cols=169 Identities=17% Similarity=0.212 Sum_probs=129.8
Q ss_pred CCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H------
Q 007057 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------ 377 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~------ 377 (620)
|...++++||++.|++..+ ++||+|.+| ++++|+|||||||||||++| |+..+ +
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4567999999999987655 999999999 99999999999999999999 77531 0
Q ss_pred ----HhhCccccCCCCC-CccHHH--------------------HHHHHcCCc----hhhccccccchHHHH-HHHHHHH
Q 007057 378 ----SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 ----a~~G~~vp~~~~~-~l~~~d--------------------~i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+.... ..++.+ .++..+|+. +.+++++++|||||+ |++++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 1112356665310 012222 223344542 356788999999999 5899999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-Hhhccccc-eeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDT-RFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~-~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+. ..+|++++ .+.+|++..+
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L-~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLI-EELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99999999999999999999999999854 44555 3799999999985 57899865 4688988654
No 236
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=220.00 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=128.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+-
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5789999999987655 999999999 99999999999999999999 776431
Q ss_pred -HhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+.... ..++.+++ +..+++. +..++.+..||+||+ ++++++++
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1112355554310 01222221 2223432 345788999999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+... +..+. .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEEL-MQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999984 44554 4789999999998 5688999999999988654
No 237
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2.5e-24 Score=213.03 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=120.5
Q ss_pred EEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC--------ccccCCCC-
Q 007057 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG--------LYLPAKNH- 389 (620)
Q Consensus 327 l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G--------~~vp~~~~- 389 (620)
++++||++.|++. .+ ++||++++| ++++|+|||||||||||+++ |+..+- .| .|+|+...
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~--~G~i~~~g~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKL--SGSVSVPGSIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCC--CCeEEEcCEEEEEecCchh
Confidence 3688999999763 34 999999999 99999999999999999999 665432 12 35555531
Q ss_pred CCccHHHH--------------HHHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 390 PRLPWFDL--------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 390 ~~l~~~d~--------------i~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
...+..++ ....+++.+ ........||+||+ |++++++++.+|+++||||||+|
T Consensus 78 ~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~ 157 (204)
T cd03250 78 QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157 (204)
T ss_pred ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 01122222 222223222 23456789999999 59999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCc
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g 489 (620)
||+.....+...++..+.+.+.|+|++||+.+....|++++.+.+|
T Consensus 158 LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 158 VDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 9999999888866655555578999999999865459998888776
No 238
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=218.39 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=128.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4789999999987665 999999999 99999999999999999999 775420
Q ss_pred HhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHhc
Q 007057 378 SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+.... ..++.+++ +..++.. +..++.+.+||+||+ +++++++++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 1112356655310 11222222 2223332 345678899999999 588899999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999 4555665 589999999998 5688999999999998754
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=221.27 Aligned_cols=162 Identities=17% Similarity=0.254 Sum_probs=125.4
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------------
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------ 376 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------------ 376 (620)
..+++++||++.|++..+ ++||+|.+| ++++|+|||||||||||++| |+..+
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 457899999999987655 999999999 99999999999999999999 77531
Q ss_pred --HHhhCccccCCCCC-CccHHHH--------------------HHHHcCC----chhhccccccchHHHH-HHHHHHHh
Q 007057 377 --MSKAGLYLPAKNHP-RLPWFDL--------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 --~a~~G~~vp~~~~~-~l~~~d~--------------------i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+...|+|+.... ..++.++ ++..++. .+..++.+.+||+||+ ++++++++
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 00112366665310 0122221 2333333 2346778899999999 58999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+||++..+.+
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETM-HELKK-NFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 9999999999999999999999999854 44554 689999999997 6689999999886
No 240
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=7.7e-25 Score=205.13 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=112.7
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCC
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~ 404 (620)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ +|.+.|.+|...+.. + ..+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~--~--~~i-- 65 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGS--T--VKI-- 65 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECC--e--EEE--
Confidence 357899999976555 999999999 99999999999999999999 888777776432221 0 000
Q ss_pred chhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccc
Q 007057 405 HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (620)
Q Consensus 405 ~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~ 482 (620)
..+..||+||+ |++++++++.+|+++|||||++|+|+.....+.+.+ +.+ +.|+|++||+.+ +..+|++
T Consensus 66 -----~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~---~~til~~th~~~~~~~~~d~ 136 (144)
T cd03221 66 -----GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY---PGTVILVSHDRYFLDQVATK 136 (144)
T ss_pred -----EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc---CCEEEEEECCHHHHHHhCCE
Confidence 11222999999 588999999999999999999999999999988844 433 469999999998 4578999
Q ss_pred cceeeCce
Q 007057 483 DTRFENAA 490 (620)
Q Consensus 483 ~~~~~~g~ 490 (620)
+..+.+|+
T Consensus 137 v~~l~~g~ 144 (144)
T cd03221 137 IIELEDGK 144 (144)
T ss_pred EEEEeCCC
Confidence 98887764
No 241
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=3.3e-24 Score=218.88 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=127.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HHH-------------------HhhC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~~-------------------a~~G 381 (620)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+. .+. .+.+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5899999999987555 999999999 99999999999999999999 762 210 1111
Q ss_pred -ccccCCCC--CCccH----------------------------HHHHHHHcCCc-hhhccccc-cchHHHH-HHHHHHH
Q 007057 382 -LYLPAKNH--PRLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (620)
Q Consensus 382 -~~vp~~~~--~~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-~lSgg~k-rl~~i~~ 427 (620)
.++|+... ..++. +..++..+|+. ...++.+. .|||||+ |++++++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 23444321 00011 12344556665 34667776 5999999 5889999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hh-ccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~-~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.+...+...+ ..+.+.+.|+|++||+.++. .+ |++++.+.+|++...
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEGI-NKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999854 44666688999999999855 45 899999999988765
No 242
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=244.42 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=126.3
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC--CCcc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PRLP 393 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~--~~l~ 393 (620)
++++|++++|+++.+ ++||+|.+| ++++|+||||||||||||++ |++.+-. ..-.|+|+... ..++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 678999999987665 999999999 99999999999999999999 7764310 00124555421 0111
Q ss_pred H-----------------------------------------------------HHHHHHHcCCchhh-ccccccchHHH
Q 007057 394 W-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSGHI 419 (620)
Q Consensus 394 ~-----------------------------------------------------~d~i~~~ig~~~~~-~~~~s~lSgg~ 419 (620)
+ +..++..+|+.+.. ++.+++|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 1 12344556665433 46789999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
+ |++++++++.+|+++||||||+|||+.....+...+. +.+.|||+||||.+ +..+|++++.+.+|++.
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 9 5888999999999999999999999999998888443 34789999999998 56899999999999875
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-24 Score=218.01 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=123.6
Q ss_pred EEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
++++|++++|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 35789999995 3434 999999999 99999999999999999999 776431 111235
Q ss_pred ccCCCC-CCccHHHHH---------------HHHcCCc-----------hhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 384 LPAKNH-PRLPWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 384 vp~~~~-~~l~~~d~i---------------~~~ig~~-----------~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
+|+... ...++.+++ ....+.. ..+++.+..||+||+ +++++++++.+|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 555431 011222221 1112222 223456789999999 589999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 160 LLDEATSALDTHTEREIQAAL-RDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHH-HHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999954 45566 8899999999986666999999999988654
No 244
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=242.44 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=133.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999999987655 999999999 99999999999999999999 776431 11123
Q ss_pred cccCCCC--CCccHH------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 383 YLPAKNH--PRLPWF------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 383 ~vp~~~~--~~l~~~------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
|+|+... ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6666531 111222 2345566776667889999999999 588899999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+.+. +..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 163 lLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999984 4556666889999999998 5688999999999987643
No 245
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=218.85 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=127.7
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------H----------H
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M----------S 378 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~----------a 378 (620)
+++||++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+ + .
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 57899999987655 999999999 99999999999999999999 77531 0 1
Q ss_pred hhCccccCCCCC-CccHHH-----------------------HHHHHcCCch----hhccccccchHHHH-HHHHHHHhc
Q 007057 379 KAGLYLPAKNHP-RLPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d-----------------------~i~~~ig~~~----~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+...|+|+.... ..++.+ .++..+|+.+ .+++.+..||+||+ +++++++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 112366665311 012222 2344555533 35678899999999 588899999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENL-IQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999999999999999999884 444554 789999999998 4578999999999998754
No 246
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.5e-24 Score=213.19 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=119.4
Q ss_pred EEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH---------------hhCccccCCCC
Q 007057 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKNH 389 (620)
Q Consensus 327 l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---------------~~G~~vp~~~~ 389 (620)
+.++|++++|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+-. +...|+|+...
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 678999999987655 899999999 99999999999999999999 7654210 11124454321
Q ss_pred --CCccHH----------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 390 --PRLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 390 --~~l~~~----------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
...++. ..++..+++.+..++.++.||+||+ +++++++++.+|+++||||||+|+|+....
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 111222 2334566777778899999999999 588999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.+...+ ....+.+.|+|++||+.+....++.
T Consensus 161 ~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~~ 191 (195)
T PRK13541 161 LLNNLI-VMKANSGGIVLLSSHLESSIKSAQI 191 (195)
T ss_pred HHHHHH-HHHHhCCCEEEEEeCCccccchhhe
Confidence 998854 4455668899999999886555553
No 247
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=1.4e-24 Score=249.32 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=124.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh----hC----ccccCCCCC-C-c
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG----LYLPAKNHP-R-L 392 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~----~G----~~vp~~~~~-~-l 392 (620)
++.++||+++|++..+ ++||+|.+| ++++|+||||||||||||+| |++.+-.- .| .++|+.... . .
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 4789999999988666 999999999 99999999999999999999 66543100 01 122221100 0 0
Q ss_pred cHH-------------------------------------------------------HHHHHHcCCchhhccccccchH
Q 007057 393 PWF-------------------------------------------------------DLILADIGDHQSLEQNLSTFSG 417 (620)
Q Consensus 393 ~~~-------------------------------------------------------d~i~~~ig~~~~~~~~~s~lSg 417 (620)
.++ ..++..+|+. .++++++|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 001 1123333443 3678999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 418 g~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||+ |++++++++.+|+++||||||+|||+.....|...+.++ +++||+||||++ +..+|++++.+.+|++....
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~ 235 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYP 235 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEec
Confidence 999 699999999999999999999999999998888744332 469999999998 56899999999999887554
Q ss_pred Cc
Q 007057 496 ET 497 (620)
Q Consensus 496 ~~ 497 (620)
++
T Consensus 236 g~ 237 (635)
T PRK11147 236 GN 237 (635)
T ss_pred CC
Confidence 44
No 248
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=2e-24 Score=217.80 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=119.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------------hhCccccCCCC--CCccHH---------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH--PRLPWF--------- 395 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------------~~G~~vp~~~~--~~l~~~--------- 395 (620)
++||++.+| ++++|+||||||||||+|++ |++.+-+ ....|+|+... ..+++.
T Consensus 3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 578999999 99999999999999999999 7765310 00135555431 111222
Q ss_pred --------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 007057 396 --------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (620)
Q Consensus 396 --------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l 460 (620)
..++..+|+.+..++.++.|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2335556777778899999999999 5888999999999999999999999999999999555543
Q ss_pred hcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 461 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 461 ~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+.+.|+|++||+++ +..+||+++.+.+|++...
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 345789999999998 5689999999999988754
No 249
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-24 Score=221.00 Aligned_cols=169 Identities=20% Similarity=0.224 Sum_probs=130.2
Q ss_pred CCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-----H-----------H------
Q 007057 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M------ 377 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-----~-----------~------ 377 (620)
+...++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+.. + .
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 3457999999999987555 999999999 99999999999999999999 8764 1 0
Q ss_pred ----HhhCccccCCCCC-CccHHHHHH----------------------HHc----CCchhhccccccchHHHH-HHHHH
Q 007057 378 ----SKAGLYLPAKNHP-RLPWFDLIL----------------------ADI----GDHQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 378 ----a~~G~~vp~~~~~-~l~~~d~i~----------------------~~i----g~~~~~~~~~s~lSgg~k-rl~~i 425 (620)
.+...|+|+.... ..++.+++. ..+ +..+.+++++..|||||+ |++++
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 1112356665310 012233321 112 122345678899999999 58889
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999954 45555 689999999998 4689999999999998654
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=241.80 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=131.5
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcccc
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLP 385 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~vp 385 (620)
++|++++|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-.|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3689999987655 999999999 99999999999999999999 876431 11123666
Q ss_pred CCCC--CCccH------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 386 AKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 386 ~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
+... ..+++ +++++..+|+....++.+++|||||+ |++++++++.+|+++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6531 11111 22345566777677889999999999 588899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 160 EPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 160 EPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999 55556767889999999998 5689999999999988654
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=1.7e-24 Score=241.66 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=131.8
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------HHhh
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------~a~~ 380 (620)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+... ..+.
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 46889999999987655 999999999 99999999999999999999 76532 0011
Q ss_pred CccccCCCC--CC--cc-------------------------HHHHHHHHcCCch-hhccccccchHHHH-HHHHHHHhc
Q 007057 381 GLYLPAKNH--PR--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 381 G~~vp~~~~--~~--l~-------------------------~~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
..|+|+... .. .. .++.++..+|+.+ ..++++++|||||+ |++++++++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 234444310 00 00 1234566678876 77899999999999 588999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEccChhHH-h-hccccceeeCceEEEec
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL 495 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~-~~vli~TH~~~l~-~-~~~~~~~~~~g~~~~~~ 495 (620)
.+|+++||||||+|||+.....+...+ ..+.+.+ .|+|++|||.+.. . +|++++.+.+|++..+.
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~~L-~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRRFV-DVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHH-HHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999954 4455555 4699999999854 5 58999999999876553
No 252
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=243.24 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=131.8
Q ss_pred CCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC---
Q 007057 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--- 389 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~--- 389 (620)
+..++++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+.. ....|+|+...
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 357899999999987655 999999999 99999999999999999999 7764311 11236666531
Q ss_pred -CCccHH----------------HHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 390 -PRLPWF----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 390 -~~l~~~----------------d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
..+++. +.++..+|+. +..++++++|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 112222 2345567773 567899999999999 588899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+...+.+ + ++|+|++|||.+ +..+|++++.+.+|++..
T Consensus 476 ~l~~~l~~-~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~ 515 (530)
T PRK15064 476 SLNMALEK-Y---EGTLIFVSHDREFVSSLATRIIEITPDGVVD 515 (530)
T ss_pred HHHHHHHH-C---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99885443 3 569999999998 557899999999998863
No 253
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=220.29 Aligned_cols=167 Identities=17% Similarity=0.257 Sum_probs=128.5
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------ 377 (620)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 47899999999987655 999999999 99999999999999999999 765310
Q ss_pred --HhhCccccCCCCC-CccHHHHH--------------------HHHcCC----chhhccccccchHHHH-HHHHHHHhc
Q 007057 378 --SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
.+...|+|+.... ..++++++ +..+++ .+..+++++.|||||+ |++++++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 0112366665311 11223322 222333 2345788899999999 589999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee---------CceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~---------~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+||+++.+. +|++..+
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLE-LKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99999999999999999999999995554 554 589999999998 568999999997 6776543
No 254
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=215.98 Aligned_cols=145 Identities=22% Similarity=0.311 Sum_probs=122.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc-----------------------------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL----------------------------- 392 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l----------------------------- 392 (620)
++||+|++| ++++++|||||||||+||++ .|...|.+|.+.+
T Consensus 42 disf~IP~G-~ivgflGaNGAGKSTtLKmL--------TGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 42 DISFEIPKG-EIVGFLGANGAGKSTTLKML--------TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred eeeeecCCC-cEEEEEcCCCCcchhhHHHH--------hCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 999999999 99999999999999999999 4444444442111
Q ss_pred -cH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 393 -PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 393 -~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
+. .+.+-+.++++..+..++..||-||+ |..++++++++|.+++|||||-|||...+
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 00 11122345667788999999999999 68888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
.++.+.+.++-.+.++||+++||++. +..+|++++.+..|++.|+.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 99999888887788999999999987 99999999999999999973
No 255
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.2e-24 Score=210.40 Aligned_cols=143 Identities=25% Similarity=0.243 Sum_probs=112.0
Q ss_pred eeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhh
Q 007057 330 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408 (620)
Q Consensus 330 ~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~ 408 (620)
.||++.|++..+ ..++++++| ++++|+||||||||||+|++ +|...|.+|...+... .++. .
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~~---~ 66 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPVY---K 66 (177)
T ss_pred CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEEE---E
Confidence 578999988776 445899999 99999999999999999999 8888887774332210 0110 0
Q ss_pred ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccce
Q 007057 409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTR 485 (620)
Q Consensus 409 ~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~ 485 (620)
.+.. .||+||+ +++++++++.+|+++||||||+|||+.....+...+.+ +.+. +.|+|++||+++ +..+|+++..
T Consensus 67 ~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~-~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 67 PQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR-LSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred cccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 1111 1999999 58899999999999999999999999999999995555 4444 489999999998 5568999888
Q ss_pred eeCceE
Q 007057 486 FENAAT 491 (620)
Q Consensus 486 ~~~g~~ 491 (620)
+.++..
T Consensus 145 l~~~~~ 150 (177)
T cd03222 145 FEGEPG 150 (177)
T ss_pred EcCCCc
Confidence 876543
No 256
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.9e-24 Score=219.04 Aligned_cols=168 Identities=21% Similarity=0.257 Sum_probs=128.7
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------ 377 (620)
..++++|+++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+-
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36889999999987555 999999999 99999999999999999999 776431
Q ss_pred --HhhCccccCCCC-CCccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+... ...++.+++ +..+++. ...++++.+|||||+ +++++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 011223444321 012222222 2233332 235678899999999 5889999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeC-----ceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~-----g~~~~~ 494 (620)
++.+|+++||||||+|+|+.....+...+.+ ++ +.+.|+|++||+++ +..+|++++.+.+ |++...
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~-l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQS-LRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999995554 54 35789999999998 5689999999998 888654
No 257
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=207.15 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=132.2
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCccc
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~v 384 (620)
|+.+|++++..++.+ ++++++.+| ++++|+||||+|||||||.+ |-+.+ ||+.-...
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 678899999977766 999999999 99999999999999999999 43321 33333344
Q ss_pred cCCCCCCcc-------------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC------CC
Q 007057 385 PAKNHPRLP-------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RE 432 (620)
Q Consensus 385 p~~~~~~l~-------------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~------~~ 432 (620)
||.....++ +.++.++..+......+..-+|||||+ |+.+++.+++ .+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 443321111 134567777777788899999999999 5777766542 34
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
..++|||||+.||+........ +.+.+...|+.|+++-||++++ .|||+++.+.+|++...
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred ceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 5999999999999999999999 6777888889999999999976 79999999999999875
No 258
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=3.1e-24 Score=218.96 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=127.0
Q ss_pred EEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCccccCC
Q 007057 328 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAK 387 (620)
Q Consensus 328 ~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~vp~~ 387 (620)
+++||++. . .+ ++||++.+| ++++|+||||||||||++++ |+... ..+...|+|+.
T Consensus 2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 45677765 1 34 999999999 99999999999999999999 77531 01112366665
Q ss_pred CC--CCccH--------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC-------CCcEEEE
Q 007057 388 NH--PRLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI 437 (620)
Q Consensus 388 ~~--~~l~~--------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~-------~~~LlLL 437 (620)
.. ..++. +++++..+|+.+..++.+.+||+||+ +++++++++. +|+++||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 31 11111 23456677888888999999999999 5888899886 6799999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 44556666889999999998 6789999999999998654
No 259
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=3.9e-24 Score=226.75 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=131.7
Q ss_pred CeEEEeeeeeecCC----cc-c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------
Q 007057 325 SEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~----~~-v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------- 377 (620)
..++++||++.|+. .. + ++||+|.+| ++++|+|+||||||||+++| |+..+-
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 47899999999942 22 3 999999999 99999999999999999999 776431
Q ss_pred --H----hhCccccCCCC----CCccHH----------------------HHHHHHcCCch---hhccccccchHHHH-H
Q 007057 378 --S----KAGLYLPAKNH----PRLPWF----------------------DLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (620)
Q Consensus 378 --a----~~G~~vp~~~~----~~l~~~----------------------d~i~~~ig~~~---~~~~~~s~lSgg~k-r 421 (620)
. +...|+|++.. ..+.+. .+++..+|+.+ .+++.+..|||||+ |
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 0 12346777641 112211 12344556542 34678999999999 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
++++++++.+|+|||+||||+|||+..+..+... +..+.+ .+.|+|++|||+.+. .+||++.++.+|++...
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL-LNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 8888999999999999999999999999999994 455554 488999999999854 79999999999998765
No 260
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-24 Score=219.75 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=129.5
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----H-------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----~------------------- 377 (620)
..++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+ .
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 57899999999987655 999999999 99999999999999999999 77541 0
Q ss_pred --HhhCccccCCCCC-CccHHHHH----------------------HHHcCCc----hhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+...|+|+.... ..++.+++ +..+++. ...++.+.+||+||+ |++++++
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112356655310 01222222 2233442 235678899999999 5899999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+.+.+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999988555 4555 689999999998 4689999999999998654
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.9e-24 Score=219.36 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=116.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh----hC--ccccCCC--CCCccHHH----------------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKN--HPRLPWFD---------------- 396 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~----~G--~~vp~~~--~~~l~~~d---------------- 396 (620)
++||++.+| ++++|+|||||||||||+++ |++.+-+- .| .++++.. ...+++.+
T Consensus 42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999 99999999999999999999 66543210 00 0111111 01122222
Q ss_pred -----HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007057 397 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (620)
Q Consensus 397 -----~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~ 470 (620)
.++..+++.+.+++.+.+||+||+ +++++++++.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~~g~tiIii 199 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-YEFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence 234445667778889999999999 588999999999999999999999999999999954 4456668899999
Q ss_pred ccChh-HHhhccccceeeCceEEEe
Q 007057 471 THYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 471 TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||+.+ +..+|++++.+.+|++...
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEEe
Confidence 99998 5688999999999988644
No 262
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=2.7e-24 Score=242.26 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=132.3
Q ss_pred CeEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------
Q 007057 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------- 377 (620)
.+++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 36889999999963 234 999999999 99999999999999999999 876520
Q ss_pred -------H-hhCccccCCCCC----CccH----------------------HHHHHHHcCCch---hhccccccchHHHH
Q 007057 378 -------S-KAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS 420 (620)
Q Consensus 378 -------a-~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~~---~~~~~~s~lSgg~k 420 (620)
. +.-.|+||.... ...+ +++++..+|+.+ ..++.+++|||||+
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 0 112467776310 0111 123455566654 35889999999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 421 -rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|++++++++.+|+++||||||+|||+.....+.. ++..+.+ .+.|+|++|||++ +..+||+++.+.+|++..+
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 5888899999999999999999999999999999 5555655 4789999999998 5679999999999988654
No 263
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=3.9e-24 Score=215.04 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=129.1
Q ss_pred eEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH---HH----------------Hh
Q 007057 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM----------------SK 379 (620)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~---~~----------------a~ 379 (620)
++.++||++.|.+ +.+ ++||++.+| ++++|+||||||||||+|++ |+.. +. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 3568899999954 234 999999999 99999999999999999999 7765 31 11
Q ss_pred hCccccCCCC--CCccHHHH-------------------------HHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNH--PRLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~--~~l~~~d~-------------------------i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
...|+|+... ..+++.++ ++..+++.+..++.++.||+||+ +++++++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 1235665531 11222222 33444555556788899999999 58899999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh--hHHhhccccceeeCceEEE
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~--~l~~~~~~~~~~~~g~~~~ 493 (620)
|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+. ++..+||++..+.+|++..
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l-~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTL-SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999954 44565678999999997 4779999999999998764
No 264
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=217.52 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=127.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------- 377 (620)
.++++|++++|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 6789999999987665 999999999 99999999999999999999 764310
Q ss_pred -HhhCccccCCCCC-CccHHHH----------------------HHHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
.+...|+|+.... ..++.++ ++..+++. ...++.+..||+||+ |+++++++
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 0112355555311 0122221 22333332 235788899999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLI-EDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999998854 44555 589999999998 5579999999999998654
No 265
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=239.90 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=133.0
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
.++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.|
T Consensus 265 ~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 265 VFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 6789999998753 34 999999999 99999999999999999999 776420 111246
Q ss_pred ccCCC-----CCCccH------------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHH
Q 007057 384 LPAKN-----HPRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (620)
Q Consensus 384 vp~~~-----~~~l~~------------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~ 426 (620)
+|+.. ...+++ +++++..+|+. +..++++++|||||+ |+.+++
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 77751 001111 23456677886 678999999999999 588899
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+.+ ++..+.+.|.|+|++|||.+ +..+||+++.+.+|++...
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999 55556666889999999988 5689999999999987643
No 266
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=5.5e-24 Score=220.03 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=130.4
Q ss_pred eEEEeeeeeecC--Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCc
Q 007057 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~ 382 (620)
.|+++|++++|. +..+ ++||+|.+| ++++|+||||+||||||++| |++.. +.+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 478999999994 3444 999999999 99999999999999999999 77531 122235
Q ss_pred cccCCCCCCc--cH--------------HHHHHHHcCCchhhcccccc-----------chHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHPRL--PW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~~~~~s~-----------lSgg~k-rl~~i~~l~~~~~L 434 (620)
|+|+... .+ ++ +.+.+..+|+.+.+++.+.. ||+||+ +++++++++.+|++
T Consensus 81 ~v~q~~~-lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 81 VIPQKVF-IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EECCCcc-cchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 6777652 11 11 12345566777667766655 999999 58999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|+|+.....+...+.+ +. .++|+|++||+++....||+++.+.+|++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 999999999999999999885554 43 37899999999986666999999999998765
No 267
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.4e-24 Score=209.57 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=122.2
Q ss_pred eEEEeeeeeecC----Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH---HH------------------
Q 007057 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM------------------ 377 (620)
Q Consensus 326 ~l~~~~l~~~y~----~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~---~~------------------ 377 (620)
.+.++||+|.|+ +..+ ++||++.+| ++++|+||||||||||++++ |+.. +-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 467899999995 3334 999999999 99999999999999999999 7654 20
Q ss_pred HhhCccccCCCC--CCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 007057 378 SKAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (620)
Q Consensus 378 a~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~ 454 (620)
.+.-.|+|+... ..+++.+++...... ..++.+..||+||+ +++++++++.+|+++||||||+|||+..+..+..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 001124454421 123445554321111 15778899999999 5889999999999999999999999999999999
Q ss_pred HHHHHHhcC-CcEEEEE-ccChh-HHhhccccceeeCceEEE
Q 007057 455 SILQYLRDR-VGLAVVT-THYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 455 all~~l~~~-~~~vli~-TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+. .+.+. +.++|++ +|+.+ +..+|++++.+.+|++..
T Consensus 160 ~l~-~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIR-TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHH-HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 554 45543 5665554 55554 678999999999998764
No 268
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=4.3e-24 Score=214.25 Aligned_cols=158 Identities=21% Similarity=0.269 Sum_probs=121.3
Q ss_pred EEEeeeeeecCC-------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------
Q 007057 327 MTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~-------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------- 377 (620)
++++|+++.|+. ..+ ++||++.+| ++++|+||||||||||+|+| |++.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 678999999962 234 999999999 99999999999999999999 765320
Q ss_pred --------HhhCccccCCCC--CCccHH---------------------HHHHHHcCCchh-hccccccchHHHH-HHHH
Q 007057 378 --------SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQS-LEQNLSTFSGHIS-RIVD 424 (620)
Q Consensus 378 --------a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~-~~~~~s~lSgg~k-rl~~ 424 (620)
.+...|+|+... ..++.. .+++..+|+.+. .++++.+||+||+ ++++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 011235666531 111111 123455666553 4778999999999 5889
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhcccccee
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF 486 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~ 486 (620)
+++++.+|+++||||||+|||+.....+...+ ..+++.+.|+|++||+.++. .+||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELI-AEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999954 45666688999999999855 689887654
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=3.5e-24 Score=239.80 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=132.7
Q ss_pred eEEEeeeeeecC---Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-H--------------------H
Q 007057 326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (620)
Q Consensus 326 ~l~~~~l~~~y~---~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-~--------------------a 378 (620)
.++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+ . .
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 578899999993 3334 999999999 99999999999999999999 87642 0 0
Q ss_pred hhCccccCCCC-----CCcc--------------------------HHHHHHHHcCCch-hhccccccchHHHH-HHHHH
Q 007057 379 KAGLYLPAKNH-----PRLP--------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 379 ~~G~~vp~~~~-----~~l~--------------------------~~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i 425 (620)
+.-.|+|+... ..++ .+++++..+++.+ ..++++.+|||||+ |++++
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 11235665520 0000 1234566777763 57899999999999 58888
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||++ +..+|++++.+.+|++..+
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998 55667777889999999998 6689999999999998764
No 270
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=5.5e-24 Score=240.98 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=126.6
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC--CC
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PR 391 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~--~~ 391 (620)
.++++||+++|+ ++.+ ++||+|.+| ++++|+||||||||||||+| |++.+.. ..-.|+|+... ..
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 688999999998 6656 999999999 99999999999999999999 7765421 11136676642 12
Q ss_pred ccHHHHH---------------------------------------------------------HHHcCCchhhcccccc
Q 007057 392 LPWFDLI---------------------------------------------------------LADIGDHQSLEQNLST 414 (620)
Q Consensus 392 l~~~d~i---------------------------------------------------------~~~ig~~~~~~~~~s~ 414 (620)
+++.+++ +..+|+. ..++++++
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~ 163 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTK 163 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhh
Confidence 2333332 1222332 24788999
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 415 lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
|||||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+ ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L-~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFL-HDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHH-HhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 999999 689999999999999999999999999999888843 333 469999999998 56899999999999875
Q ss_pred E
Q 007057 493 F 493 (620)
Q Consensus 493 ~ 493 (620)
.
T Consensus 240 ~ 240 (556)
T PRK11819 240 P 240 (556)
T ss_pred E
Confidence 3
No 271
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=216.21 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=128.2
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------ 377 (620)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 36889999999987655 999999999 99999999999999999999 775420
Q ss_pred --HhhCccccCCCCC-CccHHHH----------------------HHHHcCC----chhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
.+.-.|+|+.... ..++.++ ++..+|+ .+..++.+.+||+||+ +++++++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 0112355555310 1122222 2233444 2346778899999999 5899999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee-----CceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~-----~g~~~~~ 494 (620)
++.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+++ +..+||+++.+. +|++...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999995554 554 589999999998 568999999987 4887654
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=8.8e-24 Score=216.68 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=126.2
Q ss_pred CCeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------Hh
Q 007057 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~ 379 (620)
.+.++++|++++|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 357999999999975 334 999999999 99999999999999999999 775421 11
Q ss_pred hCccccCCCCC-CccH--------------HHHHHHHcCCc-----------hhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 380 AGLYLPAKNHP-RLPW--------------FDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~--------------~d~i~~~ig~~-----------~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
...|+|+.... ..++ +...+...+.. ..+......||+||+ +++++++++.+|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 22456655310 0011 11122222332 233445679999999 588999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+++....|++++.+.+|++..+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVV-MTAFA-DRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHhcC-CCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999998888844 44543 7899999999986656999999999998754
No 273
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=1e-23 Score=209.14 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=125.3
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++|++++|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+ ..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 46899999999975 234 999999999 99999999999999999999 76532 0112
Q ss_pred CccccCCCCC-CccHHHHH-----------HHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 381 GLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i-----------~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
-.|+|+.... ..++.+++ ...++ ++..+.+||+||+ |++++++++.+|+++||||||+|||+.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 2456665311 11223322 11111 4578899999999 599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
....+...+.+ +.+ +.|+|++||+.+....|++++.+.+|++..+
T Consensus 160 ~~~~l~~~l~~-~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~~ 204 (207)
T cd03369 160 TDALIQKTIRE-EFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKEY 204 (207)
T ss_pred HHHHHHHHHHH-hcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEec
Confidence 99999885444 443 7899999999986555999999999987643
No 274
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=216.44 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=126.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----H--------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----~-------------------- 377 (620)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 6899999999987655 999999999 99999999999999999999 76531 0
Q ss_pred -HhhCccccCCCCC-CccHHHHH--------------------HHHcCCc----hhhccccccchHHHH-HHHHHHHhcC
Q 007057 378 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
.+...|+|+.... ..++.+++ +..++.. +..++.+.+|||||+ +++++++++.
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0112355554210 01222222 2233332 235678889999999 5899999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee---------CceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~---------~g~~~~~ 494 (620)
+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEEL-MHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999984 445555 479999999998 678999999987 5766543
No 275
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=215.81 Aligned_cols=166 Identities=23% Similarity=0.247 Sum_probs=129.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------ 378 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------------------------ 378 (620)
.+.++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+-.
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 5789999999998766 999999999 99999999999999999999 7754310
Q ss_pred -hhCccccCCCC--CCccHHHH----------------------HHHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 379 -KAGLYLPAKNH--PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 379 -~~G~~vp~~~~--~~l~~~d~----------------------i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
+...|+|+... ..+++.++ ++..+++. +..++.+..||+||+ ++++++++
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11235555531 11122222 23344553 345678899999999 58999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+.. .+|++++.+.+|++...
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999954 45554 58999999999854 89999999999988654
No 276
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=8e-24 Score=238.45 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=131.7
Q ss_pred eEEEeeeeeecC-----------Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------
Q 007057 326 EMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~-----------~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------- 376 (620)
+++++|+++.|+ ++.+ ++||++.+| ++++|+||||||||||+|++ |+...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccc
Confidence 567899999995 2344 999999999 99999999999999999999 77520
Q ss_pred ------HHhhCccccCCCC----CCccHH-----------------------HHHHHHcCCc-hhhccccccchHHHH-H
Q 007057 377 ------MSKAGLYLPAKNH----PRLPWF-----------------------DLILADIGDH-QSLEQNLSTFSGHIS-R 421 (620)
Q Consensus 377 ------~a~~G~~vp~~~~----~~l~~~-----------------------d~i~~~ig~~-~~~~~~~s~lSgg~k-r 421 (620)
+.+.-.|+|+... ..+++. .+++..+|+. +..++++++|||||+ |
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 0111246776531 111111 2345566775 467899999999999 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++++.+|+++||||||+|||+.....+...+. .+.+ .+.|+|++|||++ +..+|++++.+.+|++..+
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLK-SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHH-HHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 888999999999999999999999999999999554 4554 4789999999998 5689999999999998654
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.1e-24 Score=242.44 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=134.2
Q ss_pred CeEEEeeeeeecCC-----------ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------
Q 007057 325 SEMTVGSLSKGISD-----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-----------~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------- 377 (620)
.+++++||++.|+. ..+ ++||+|.+| ++++|+||||||||||+|+| |++.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 47899999999962 233 999999999 99999999999999999999 876420
Q ss_pred ---------HhhCccccCCCC----CCccHH----------------------HHHHHHcCCc-hhhccccccchHHHH-
Q 007057 378 ---------SKAGLYLPAKNH----PRLPWF----------------------DLILADIGDH-QSLEQNLSTFSGHIS- 420 (620)
Q Consensus 378 ---------a~~G~~vp~~~~----~~l~~~----------------------d~i~~~ig~~-~~~~~~~s~lSgg~k- 420 (620)
.+...|+||... ..+++. .+++..+|+. +..++.+++|||||+
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 111246777641 112221 2345667775 567899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 421 rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|++++++++.+|+||||||||+|||+.....+.+.+ ..+.+ .|.|+|++|||++ +..+||++..+.+|++...
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll-~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLL-LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 588999999999999999999999999999999954 44554 4889999999998 5589999999999998754
No 278
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=213.36 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=127.7
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH--H------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L------------------------ 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~--~------------------------ 376 (620)
.++++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+.. +
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 3678999999987555 999999999 99999999999999999999 7642 0
Q ss_pred HHhhCccccCCCCC-CccHHHH----------------------HHHHcCCc----hhhccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+...|+|+.... ..+..++ ++..+|+. ...++++..||+||+ ++++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 01123466665311 0112222 22333432 235678899999999 58999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|++..+
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 99999999999999999999999988554 4554 789999999998 6688999888999998765
No 279
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-23 Score=215.60 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=129.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------------- 376 (620)
+.++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 56899999999987665 999999999 99999999999999999999 77531
Q ss_pred ---HHhhCccccCCCCC-CccHHHH----------------------HHHHcCC----chhhccccccchHHHH-HHHHH
Q 007057 377 ---MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 377 ---~a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~s~lSgg~k-rl~~i 425 (620)
+.+...|+|+.... ..++.++ .+..++. .+..++....||+||+ +++++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 01112356655310 0122221 2223333 2345678899999999 58889
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 174 ral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 174 RALATDPEILLFDEPTSALDPIATASIEELI-SDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999954 45555 589999999998 4589999999999998755
No 280
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=221.01 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=129.2
Q ss_pred CCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------
Q 007057 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------- 376 (620)
++..+.++||++.|++..+ ++||+|.+| ++++|+|||||||||||++| |+..+
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3457999999999987655 999999999 99999999999999999999 77531
Q ss_pred ---HHhhCccccCCCC-CCccHHHHH----------------------------------HHHcCC----chhhcccccc
Q 007057 377 ---MSKAGLYLPAKNH-PRLPWFDLI----------------------------------LADIGD----HQSLEQNLST 414 (620)
Q Consensus 377 ---~a~~G~~vp~~~~-~~l~~~d~i----------------------------------~~~ig~----~~~~~~~~s~ 414 (620)
..+...|+|+... ...++.+++ +..+++ ....++.+..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 0112346666531 011222222 222333 2344678899
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-Hhhcccc-ceeeCceE
Q 007057 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKD-TRFENAAT 491 (620)
Q Consensus 415 lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~-~~~~~g~~ 491 (620)
|||||+ |++++++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+. ..+|+++ +.+.+|++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999 589999999999999999999999999999998854 45555 4799999999984 6889986 45689988
Q ss_pred EEe
Q 007057 492 EFS 494 (620)
Q Consensus 492 ~~~ 494 (620)
..+
T Consensus 279 ~~~ 281 (305)
T PRK14264 279 VEY 281 (305)
T ss_pred EEe
Confidence 755
No 281
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=4.5e-24 Score=208.79 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=105.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhCccccCCCC---CCccHH-
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPWF- 395 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G~~vp~~~~---~~l~~~- 395 (620)
++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+... ...++.
T Consensus 10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~ 88 (190)
T TIGR01166 10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ 88 (190)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence 899999999 99999999999999999999 775430 111246666531 111211
Q ss_pred --------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 007057 396 --------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (620)
Q Consensus 396 --------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~ 454 (620)
+.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 2345566777788999999999999 5889999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccChhH
Q 007057 455 SILQYLRDRVGLAVVTTHYADL 476 (620)
Q Consensus 455 all~~l~~~~~~vli~TH~~~l 476 (620)
.+ ..+.+.+.|+|++||+.++
T Consensus 169 ~l-~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 169 IL-RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HH-HHHHHcCCEEEEEeecccc
Confidence 54 4556668899999999763
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=228.63 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=135.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-------------- 389 (620)
.++++|++|+||+..+ ++||++.+| ++++|+|.||||||||+|++ +|.|.|.+|.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCHH
Confidence 5789999999998766 999999999 99999999999999999999 6666666551
Q ss_pred -----------------CCccHHH-------------------------HHHHHcCCchhhccccccchHHHHH-HHHHH
Q 007057 390 -----------------PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDIL 426 (620)
Q Consensus 390 -----------------~~l~~~d-------------------------~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~ 426 (620)
+.+++.+ +++..+|.....+..+.+||++++| +.+++
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 1222222 3456667655588999999999998 66668
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++..++.+|||||||+.|+..+...|.. +++.|+++|.++|++||.++ +..+||++.++.+|....+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 8999999999999999999999999999 78889999999999999987 7799999999999987543
No 283
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.7e-24 Score=208.17 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=127.2
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------HHhh
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------~a~~ 380 (620)
..|+++||+..|+++.+ ++|.+|++| +.++|+|||||||||||+++ |-..+ ..++
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 35889999999999888 999999999 99999999999999999999 32211 1112
Q ss_pred Cccc--------cCCC---------CCCccH------------HHHHHHHcCCchhhccccccchHHHHH-HHHHHHhcC
Q 007057 381 GLYL--------PAKN---------HPRLPW------------FDLILADIGDHQSLEQNLSTFSGHISR-IVDILELVS 430 (620)
Q Consensus 381 G~~v--------p~~~---------~~~l~~------------~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~ 430 (620)
|..- +... +..++. ...++..+|.....+++..+||-||+| +.++++++.
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~ 188 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc
Confidence 2100 0000 011111 224577888888999999999999996 556689999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~--~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+|.|+|||||++|||...+..+...+ ..+... +.++|+|||+.+. ..-.++...+.+|++...
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l-~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRL-EELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHH-HHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 99999999999999999999999844 445543 5689999999874 455677777888887654
No 284
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.6e-24 Score=243.15 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=133.5
Q ss_pred CeEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------
Q 007057 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------- 377 (620)
.+++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||+|+| |++.+-
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 47899999999963 234 999999999 99999999999999999999 776420
Q ss_pred -------------HhhCccccCCC----CCCccHHH----------------------HHHHHcCCc---hhhccccccc
Q 007057 378 -------------SKAGLYLPAKN----HPRLPWFD----------------------LILADIGDH---QSLEQNLSTF 415 (620)
Q Consensus 378 -------------a~~G~~vp~~~----~~~l~~~d----------------------~i~~~ig~~---~~~~~~~s~l 415 (620)
.+.-.|+||.. ...+++.+ +++..+|+. ..+++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 00123666653 11222222 245566774 3478899999
Q ss_pred hHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 416 SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 416 Sgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
||||+ |++++++++.+|++|||||||+|||+.....+.+ +++.+.+ .|.|+|++|||++ +..+||+++.+.+|++.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 99999 5888899999999999999999999999999999 6666764 4889999999998 56899999999999886
Q ss_pred Ee
Q 007057 493 FS 494 (620)
Q Consensus 493 ~~ 494 (620)
.+
T Consensus 249 ~~ 250 (623)
T PRK10261 249 ET 250 (623)
T ss_pred cc
Confidence 53
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=3e-24 Score=207.48 Aligned_cols=143 Identities=26% Similarity=0.278 Sum_probs=112.2
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCcc-----ccCCCCCCccHH--HHHHHHcCCch-hhccccc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY-----LPAKNHPRLPWF--DLILADIGDHQ-SLEQNLS 413 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~-----vp~~~~~~l~~~--d~i~~~ig~~~-~~~~~~s 413 (620)
++||++.+| ++++|+||||||||||||++. . ..|.. .+......+.++ .+.+..+++.. .++++++
T Consensus 13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il--~---~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGL--Y---ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHh--h---cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcC
Confidence 899999999 999999999999999999981 0 12211 111000011121 34678888875 4789999
Q ss_pred cchHHHH-HHHHHHHhcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCce
Q 007057 414 TFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 414 ~lSgg~k-rl~~i~~l~~~--~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
+||+||+ +++++++++.+ |+++||||||+|+|+.....+...+. .+.+.|.|+|++||+.+....||+++.+.+|+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~-~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK-GLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999 58888999999 99999999999999999999999554 45666899999999998777899988887654
Q ss_pred E
Q 007057 491 T 491 (620)
Q Consensus 491 ~ 491 (620)
.
T Consensus 166 ~ 166 (176)
T cd03238 166 G 166 (176)
T ss_pred C
Confidence 3
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=1.1e-23 Score=238.35 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=126.5
Q ss_pred CeEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCC--C
Q 007057 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--P 390 (620)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~--~ 390 (620)
.+++++||+++|+ ++.+ ++||+|.+| ++++|+||||||||||||+| |++.+.. ..-.|+|+... .
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 3688999999997 5555 999999999 99999999999999999999 7764321 11236666542 1
Q ss_pred CccHHHHHH---------------------------------------------------------HHcCCchhhccccc
Q 007057 391 RLPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLS 413 (620)
Q Consensus 391 ~l~~~d~i~---------------------------------------------------------~~ig~~~~~~~~~s 413 (620)
.+++.+++. ..+|+. ..+++++
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 160 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVT 160 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchh
Confidence 223333321 111221 2467899
Q ss_pred cchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceE
Q 007057 414 TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (620)
Q Consensus 414 ~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~ 491 (620)
+|||||+ |++++++++.+|+++||||||+|||+.....+...+.+ + ++|+|++||+.+ +..+|++++.+.+|++
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~---~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y---PGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C---CCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999 68899999999999999999999999999988884433 2 469999999998 5688999999999987
Q ss_pred EEe
Q 007057 492 EFS 494 (620)
Q Consensus 492 ~~~ 494 (620)
...
T Consensus 237 ~~~ 239 (552)
T TIGR03719 237 IPW 239 (552)
T ss_pred EEe
Confidence 643
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=7.4e-24 Score=239.82 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=129.3
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------h--hCccccCCCC---C
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNH---P 390 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~--~G~~vp~~~~---~ 390 (620)
.+++++|+++.|+++.+ ++||+|.+| ++++|+||||||||||||++ |++.+.. . .-.|+|+... .
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 399 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 399 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCC
Confidence 46899999999987655 999999999 99999999999999999999 7765321 0 1136666521 1
Q ss_pred CccHH-------------------HHHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 391 RLPWF-------------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 391 ~l~~~-------------------d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
.+++. ..++..+|+.+ ..++++++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 12222 23456677753 46889999999999 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC-ceEEE
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATEF 493 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~-g~~~~ 493 (620)
..+...+.+ + ++++|++|||.+ +..+|++++.+.+ |.+..
T Consensus 480 ~~l~~~l~~-~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 480 RALEEALLE-F---AGCAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred HHHHHHHHH-C---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 999985544 3 358999999998 5679999999986 46553
No 288
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=7e-24 Score=240.49 Aligned_cols=166 Identities=23% Similarity=0.232 Sum_probs=131.5
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------hhCccccCCCC--CCccH
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH--PRLPW 394 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~~G~~vp~~~~--~~l~~ 394 (620)
..++++|+++.|++..+ ++++++.+| ++++|+||||||||||||++ |++.+.. ..-.|+|+... ..+++
T Consensus 339 ~~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 339 TLVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTV 417 (590)
T ss_pred eEEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcH
Confidence 36789999999987545 889999999 99999999999999999999 7765421 01235666531 11121
Q ss_pred ----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 007057 395 ----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (620)
Q Consensus 395 ----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all 457 (620)
.++++..+|+.+..++++++|||||+ |++++++++.+|+++||||||+|||+..+..+...+.
T Consensus 418 ~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 418 EDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 23456778888888999999999999 5889999999999999999999999999999999554
Q ss_pred HHHhcCCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 458 ~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
+...+.+.|+|++|||.+ +..+||+++.+.+ ++.
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 433345889999999998 4578999888865 443
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=1.1e-23 Score=236.89 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=131.1
Q ss_pred eEEEeeeeeecCC-----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------H--------------
Q 007057 326 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M-------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~-----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------~-------------- 377 (620)
+++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 5789999999942 334 999999999 99999999999999999999 77532 1
Q ss_pred ------HhhCccccCCCC--CCccHHH--------------------HHHHHcCCch-----hhccccccchHHHH-HHH
Q 007057 378 ------SKAGLYLPAKNH--PRLPWFD--------------------LILADIGDHQ-----SLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 378 ------a~~G~~vp~~~~--~~l~~~d--------------------~i~~~ig~~~-----~~~~~~s~lSgg~k-rl~ 423 (620)
.+.-.|+|+... ..+++++ .++..+|+.+ ..++++.+|||||+ |++
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 011236676531 1122222 2345566653 46889999999999 588
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++.+|+++||||||+|||+.....+...+. .+. +.|.|+|++|||.+ +..+|++++.+.+|++...
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~-~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL-KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999554 454 45889999999998 5589999999999988654
No 290
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=1.1e-23 Score=243.06 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=129.9
Q ss_pred CCeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCCCC
Q 007057 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR 391 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~~~ 391 (620)
...++++||+++|++ ..+ ++||+|.+| ++++|+||||||||||||+| |++.+.. ....|+|+.....
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 457999999999964 434 999999999 99999999999999999999 7765421 0112455542111
Q ss_pred cc-------------------HHHHHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 392 LP-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 392 l~-------------------~~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
+. .+..++..+|+.+ ..++++++|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 10 1224566777764 57889999999999 689999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+..
T Consensus 665 ~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 665 ALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 887755443 459999999998 557999999999999863
No 291
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=1.2e-23 Score=238.12 Aligned_cols=163 Identities=22% Similarity=0.273 Sum_probs=129.2
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------h--hCccccCCC-C--C
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKN-H--P 390 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~--~G~~vp~~~-~--~ 390 (620)
..++++||++.|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+.. . ...|+|+.. . .
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 401 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 401 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCC
Confidence 46899999999987665 999999999 99999999999999999999 7764321 0 113667653 1 1
Q ss_pred CccHHH-------------------HHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 391 RLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 391 ~l~~~d-------------------~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
.+++++ .++..+|+.+ ..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus 402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 481 (556)
T PRK11819 402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL 481 (556)
T ss_pred CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 122222 3455667753 56889999999999 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC-ceEE
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~-g~~~ 492 (620)
..+...+.+ + .+++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 482 ~~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 482 RALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 999985544 3 358999999998 5688999999986 6664
No 292
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=9.8e-24 Score=226.73 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=129.7
Q ss_pred eeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------H--------------------hh
Q 007057 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------------------KA 380 (620)
Q Consensus 331 ~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------a--------------------~~ 380 (620)
++.+.||...+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 46677776554 999999999 99999999999999999999 775421 0 11
Q ss_pred CccccCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
..|+|+... ..+++.+ +++..+|+.+..++.+..|||||+ |+.++++++.+|+++|
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 245666531 1122222 345667888888999999999999 5889999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+||||..+..+...+.+...+.+.|+|++|||++. ..+|+++..+.+|++...
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999996665433458899999999985 589999999999998754
No 293
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.9e-23 Score=212.92 Aligned_cols=144 Identities=22% Similarity=0.211 Sum_probs=110.5
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-------hhCccccCCCCC--CccH-----------------HHH
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP--RLPW-----------------FDL 397 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-------~~G~~vp~~~~~--~l~~-----------------~d~ 397 (620)
.++.+| ++++|+||||||||||||+| |++.+-. +...|+|+.... ..++ ..+
T Consensus 20 ~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 20 GSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 445678 99999999999999999999 6654321 011355554311 1121 123
Q ss_pred HHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-
Q 007057 398 ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD- 475 (620)
Q Consensus 398 i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~- 475 (620)
++..+|+.+..++.+++|||||+ +++++++++.+|+++||||||++||+..+..+...+.+...+.+.|+|++||+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 55667777788899999999999 5889999999999999999999999999999999555433445789999999998
Q ss_pred HHhhccccceeeCc
Q 007057 476 LSCLKDKDTRFENA 489 (620)
Q Consensus 476 l~~~~~~~~~~~~g 489 (620)
+..+||+++.+.+.
T Consensus 179 ~~~~~d~i~~l~~~ 192 (246)
T cd03237 179 IDYLADRLIVFEGE 192 (246)
T ss_pred HHHhCCEEEEEcCC
Confidence 45689998888553
No 294
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=1.8e-23 Score=209.05 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=121.2
Q ss_pred EEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------Hhh
Q 007057 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKA 380 (620)
Q Consensus 328 ~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~~ 380 (620)
.+.|+.++|+. ..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+.
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 46788899964 344 999999999 99999999999999999999 776420 011
Q ss_pred CccccCCCC-CCccHHHH--------------HHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCc
Q 007057 381 GLYLPAKNH-PRLPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 381 G~~vp~~~~-~~l~~~d~--------------i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
-.|+|+... ...+..++ ++..+++.+. ++..+.+||+||+ |++++++++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 235555531 01122222 2233333322 2357889999999 5889999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccChhHHhhccccceeeCce
Q 007057 434 LVLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~a-ll~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
++||||||+|||+.....+... +++.+.+.+.|+|++||+.+....|++++.+.+|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999884 66667666889999999998666799888887763
No 295
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.7e-23 Score=234.70 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=129.9
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCc
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~ 382 (620)
..++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.
T Consensus 267 ~~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 267 PVLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred ceEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 46788888842 24 899999999 99999999999999999999 876420 01124
Q ss_pred cccCCC-----CCCccH------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCC
Q 007057 383 YLPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 383 ~vp~~~-----~~~l~~------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
|+|+.. ...+++ ++.++..+|+. +..++++++|||||+ |+.++++++.+
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~ 421 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS 421 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence 677642 011111 22345667776 678899999999999 58889999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|++|||||||+|||+.....+.. ++..+.+.|.++|++|||++ +..+||+++.+.+|++...
T Consensus 422 p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 422 PQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred CCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999 55556666889999999998 5689999999999988753
No 296
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=198.74 Aligned_cols=144 Identities=22% Similarity=0.353 Sum_probs=111.2
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccH-------HHHHH
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FDLIL 399 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~-------~d~i~ 399 (620)
++|+++.|.+..+ ++++++.+| ++++|+||||+|||||++++ .|.+.|..|...+.. ..+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCEEcccCCHHHHH
Confidence 5688889976555 999999999 99999999999999999999 777666665322211 01111
Q ss_pred HHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HH
Q 007057 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~ 477 (620)
..++ .+..||+||+ ++.++++++.+|+++||||||+|||+.....+...+.+ +.+.+.++|++||+++ +.
T Consensus 73 ~~i~-------~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 73 RRIG-------YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hceE-------EEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 1111 1112999999 58888999999999999999999999999999995555 4544689999999998 45
Q ss_pred hhccccceeeCc
Q 007057 478 CLKDKDTRFENA 489 (620)
Q Consensus 478 ~~~~~~~~~~~g 489 (620)
.+|++.+.+.+|
T Consensus 145 ~~~d~i~~l~~g 156 (157)
T cd00267 145 LAADRVIVLKDG 156 (157)
T ss_pred HhCCEEEEEeCc
Confidence 678998888765
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.6e-23 Score=232.82 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=127.3
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
.++++|++.. ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+.-.|
T Consensus 257 ~l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 3566666632 233 999999999 99999999999999999999 776421 011235
Q ss_pred ccCCC-----CCCccH---------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 384 LPAKN-----HPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 384 vp~~~-----~~~l~~---------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+|+.. ...++. ...++..+|+. +..++++.+|||||+ |+.++++++
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 56542 001111 12345667773 567899999999999 588889999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|++|||||||+|||+.....+.+ ++..+.+.|.|+|++|||++ +..+|++++.+.+|++...
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 55556777899999999998 5689999999999988654
No 298
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=2.3e-23 Score=210.08 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=118.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----H-----------------HhhCccccCCCC----CCccH-
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGLYLPAKNH----PRLPW- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----~-----------------a~~G~~vp~~~~----~~l~~- 394 (620)
++||++.+| ++++|+||||||||||+|+| |++.+ - .+.-.|+|+... ..++.
T Consensus 4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 678999999 99999999999999999999 87653 1 111235665531 11221
Q ss_pred --------------------HHHHHHHcCCc---hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 395 --------------------FDLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 395 --------------------~d~i~~~ig~~---~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
+.+++..+|+. +..++.+++|||||+ +++++++++.+|+++||||||+|||+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 12234555665 457889999999999 588999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 451 ALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 451 ~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 ~l~~~l~~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 163 RVLKLLRE-LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99995554 554 4789999999998 5579999999999998754
No 299
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=2.1e-23 Score=194.45 Aligned_cols=167 Identities=23% Similarity=0.312 Sum_probs=134.1
Q ss_pred eEEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------
Q 007057 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------- 376 (620)
+|+++++++..|.. .| ++++.+.+| +.++|+||+||||||||-.+ ||-.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 56666777766532 23 999999999 99999999999999999998 55321
Q ss_pred -HHhhCccccCCCC--CCc--------c-------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 377 -MSKAGLYLPAKNH--PRL--------P-------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 377 -~a~~G~~vp~~~~--~~l--------~-------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+....||+|+.. +.+ | .-...+..+|+.+.+..++.+||||++ |++++++++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 1222235555531 111 1 122467889999999999999999998 69999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEE
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
|++++.||||.+||...+..+++.+...-.+.|.|.++||||..++.-|++.+.+.+|+++-
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999776655677889999999999999999999999998753
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=233.11 Aligned_cols=165 Identities=12% Similarity=0.155 Sum_probs=129.3
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
+++++|+++.|. ..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|
T Consensus 250 ~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 250 ILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 578888888752 233 999999999 99999999999999999999 776430 111235
Q ss_pred ccCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+|+... ..+++ +..++..+++. +..++++.+|||||+ |++++++++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 665420 11111 12344555664 457899999999999 588889999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+|+++||||||+|+|+.....+.+ ++..+.+.+.|+|++|||.+ +..+||+++.+.+|++..
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999 55567777899999999998 568999999999998874
No 301
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.2e-23 Score=211.50 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=127.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------------- 376 (620)
.+.++++++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 5778899999987655 999999999 99999999999999999999 77632
Q ss_pred HHhhCccccCCCCC-CccHHHH--------------------HHHHcCCch----hhccccccchHHHH-HHHHHHHhcC
Q 007057 377 MSKAGLYLPAKNHP-RLPWFDL--------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d~--------------------i~~~ig~~~----~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
..+...|+|+.... ..+.+++ ++..+++.. ..++++..||+||+ +++++++++.
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 01112456655311 1222222 333444422 33567789999999 5888999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceee--------CceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~--------~g~~~~~ 494 (620)
+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+++ +..+||+++.+. +|++...
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELMV-ELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 999999999999999999999999554 4554 689999999998 568999999995 6777654
No 302
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.7e-23 Score=217.72 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=130.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------- 376 (620)
+.++++|++++|.+ ..+ ++||+|.+| ++++|+|||||||||||++| |+..+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 58999999999953 334 999999999 99999999999999999999 77531
Q ss_pred ---HHhhCccccCCCCC-CccHHHHH----------------------HHHcCC----chhhccccccchHHHH-HHHHH
Q 007057 377 ---MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 377 ---~a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~s~lSgg~k-rl~~i 425 (620)
+.+.-.|+|+.... ..++.+++ +..+++ ...++++..+|||||+ |++++
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 11223467776421 11222222 233333 2345788999999999 59999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+++ +..+||+++.+.+|++...
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i-~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELI-LELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988844 55555 589999999998 4578999999999998754
No 303
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=196.93 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=135.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhH-H---------------HHhhCccccCC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS-L---------------MSKAGLYLPAK 387 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~-~---------------~a~~G~~vp~~ 387 (620)
.+.++|+.|+||...| ++|++-..| +++.|+|.+||||||+||||.++- + ....|..+|++
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 5788999999998777 999999999 999999999999999999995542 1 11223333333
Q ss_pred C-------------------CCCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHH
Q 007057 388 N-------------------HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 388 ~-------------------~~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i 425 (620)
. ...+++++ ..+..+|+.+..+.++..|||||+ |.+++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 2 01112222 346788999999999999999999 58888
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|.++|+||||+.|||+---.+.. ++..|.+.|.|.+++||.+.++ ..+.++..+.+|.++..
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 99999999999999999999999888888 7788999999999999999977 57778888888877643
No 304
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=3.3e-23 Score=256.25 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=138.8
Q ss_pred CCeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhh
Q 007057 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~ 380 (620)
...++++||+|.|++ +.+ ++||.+.+| ++++|+||||||||||+|+| |++.+ ..+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 357999999999985 334 999999999 99999999999999999999 77643 0112
Q ss_pred CccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
-.|+|+... ..++. ++.++..+|+.+..++.+++|||||| |++++++++.+|+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 346777631 11221 22346667888888999999999999 5899999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
|||||+|+||..+..+.+ ++..+.+.|.++|+|||+++ ...+||++..+.+|++....
T Consensus 2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999 55556666889999999998 56899999999999987753
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=9.1e-23 Score=211.70 Aligned_cols=169 Identities=17% Similarity=0.084 Sum_probs=125.0
Q ss_pred CCCeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh------hCccccCCCCC-Ccc
Q 007057 323 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLP 393 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~------~G~~vp~~~~~-~l~ 393 (620)
+...|+++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+.+- .-.|+|+.... ..+
T Consensus 36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t 113 (282)
T cd03291 36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT 113 (282)
T ss_pred CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence 4567899999986 32233 999999999 99999999999999999999 66543210 01255554310 012
Q ss_pred HHHHH--------------HHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 394 WFDLI--------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 394 ~~d~i--------------~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+.+++ +..+++.+. +....+.||+||+ |++++++++.+|+++||||||+|||+.
T Consensus 114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~ 193 (282)
T cd03291 114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193 (282)
T ss_pred HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 22222 222233221 2234579999999 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
....+...++..+.+ +.|+|++||+.+....|++++.+.+|.+.+.
T Consensus 194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999888766655544 6899999999986678999999999998754
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=3.7e-23 Score=211.71 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=117.9
Q ss_pred eeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-h--------------hC---------
Q 007057 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K--------------AG--------- 381 (620)
Q Consensus 330 ~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-~--------------~G--------- 381 (620)
.+|+++|++.. + ++++ +.+| ++++|+||||||||||||++ |+..+-+ + .|
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 47889997643 3 8884 8999 99999999999999999999 6654210 0 00
Q ss_pred --------ccccCCCCCCcc------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 382 --------LYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 382 --------~~vp~~~~~~l~------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
.++|+.. ...+ ...+++..+|+.+..++.+.+||+||+ +++++++++.+|++
T Consensus 82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 1222211 0111 123456677888788899999999999 58889999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-Hhhccccceee
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFE 487 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~ 487 (620)
+||||||+|||+.....+.+ ++..+.+.+.++|++||+++. ..+|+++..+.
T Consensus 161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 99999999999999999998 555566667899999999984 56899887774
No 307
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=5e-23 Score=230.54 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=128.5
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------HhhCcc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~G~~ 383 (620)
.++++|+++. .+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|
T Consensus 257 ~l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 331 (501)
T PRK10762 257 RLKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331 (501)
T ss_pred EEEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEE
Confidence 4667777752 24 999999999 99999999999999999999 776431 111346
Q ss_pred ccCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhc
Q 007057 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+|+... ..+++ +++++..+|+. +..++++.+|||||+ |+.++++++
T Consensus 332 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM 411 (501)
T ss_pred ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 777631 11111 22345667774 567899999999999 588999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|+++||||||+|||+.....+.+. +..+.+.|.|+|++|||.+ +..+|++++.+.+|++...
T Consensus 412 ~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQL-INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred hCCCEEEEcCCCCCCCHhHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999995 4456666889999999998 5689999999999988654
No 308
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=4.2e-23 Score=238.34 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=124.1
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-HHhhC--ccccCCCC-CCccH---
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-MSKAG--LYLPAKNH-PRLPW--- 394 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-~a~~G--~~vp~~~~-~~l~~--- 394 (620)
..|.++|++++|++..+ ++||+|.+| ++++|+||||||||||||+| |.... ....| .|+++... ..++.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 36899999999987666 999999999 99999999999999999999 53200 00000 01121100 00000
Q ss_pred ---------------------------------------------------------------------HHHHHHHcCCc
Q 007057 395 ---------------------------------------------------------------------FDLILADIGDH 405 (620)
Q Consensus 395 ---------------------------------------------------------------------~d~i~~~ig~~ 405 (620)
...++..+|+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 01123334443
Q ss_pred -hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccc
Q 007057 406 -QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (620)
Q Consensus 406 -~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~ 482 (620)
...++++++|||||+ |++++++++.+|+++||||||+|||+.....|...+.+ .++|+|+||||.+ +..+|++
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCE
Confidence 345788999999999 68999999999999999999999999998888774433 3789999999998 5688999
Q ss_pred cceeeCceEEEecCc
Q 007057 483 DTRFENAATEFSLET 497 (620)
Q Consensus 483 ~~~~~~g~~~~~~~~ 497 (620)
++.+.+|++....++
T Consensus 411 i~~l~~g~i~~~~g~ 425 (718)
T PLN03073 411 ILHLHGQKLVTYKGD 425 (718)
T ss_pred EEEEECCEEEEeCCC
Confidence 999999988654433
No 309
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.3e-23 Score=212.47 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=132.0
Q ss_pred EEEeeeeeecCC-----ccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-H----------------------
Q 007057 327 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-L---------------------- 376 (620)
Q Consensus 327 l~~~~l~~~y~~-----~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-~---------------------- 376 (620)
++++||+..|.. +.| ++||++.+| ++++|+|.+||||||+.+.| |++. .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 578999999953 223 999999999 99999999999999999999 8775 2
Q ss_pred -H----HhhCccccCCCCCCcc----H-----------------------HHHHHHHcCCch---hhccccccchHHHHH
Q 007057 377 -M----SKAGLYLPAKNHPRLP----W-----------------------FDLILADIGDHQ---SLEQNLSTFSGHISR 421 (620)
Q Consensus 377 -~----a~~G~~vp~~~~~~l~----~-----------------------~d~i~~~ig~~~---~~~~~~s~lSgg~kr 421 (620)
| .+...++||++...+. + ..+++..+|+.+ .++.++..|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 0 0112356666421111 1 112455666654 568999999999995
Q ss_pred -HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 422 -IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 -l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.++++++.+|+|||.||||++||...+..+.+ +++.+.+ .|.++|++|||+. ++.+||++.+|..|.++..
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe
Confidence 777799999999999999999999999999999 6666765 6889999999999 6699999999999998764
No 310
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=4.9e-23 Score=225.32 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=134.7
Q ss_pred eEEEeeeeeecCCc-----cc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------
Q 007057 326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~-----~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------- 377 (620)
.++++|+++.|... .| ++||++.+| ++++|+|.+||||||+.+++ |++..-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 67899999999532 23 999999999 99999999999999999999 776531
Q ss_pred ------HhhCccccCCCCCCccH--------------------------HHHHHHHcCCchhhcc--ccccchHHHHH-H
Q 007057 378 ------SKAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQSLEQ--NLSTFSGHISR-I 422 (620)
Q Consensus 378 ------a~~G~~vp~~~~~~l~~--------------------------~d~i~~~ig~~~~~~~--~~s~lSgg~kr-l 422 (620)
.....++||++...++. ..+++..+|+.+.... ++..|||||+| +
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 11224677765333321 1135667777765554 99999999995 7
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.++++++.+|+|||+||||++||+..+..+.+++.+...+.|.++|++|||++ ++.+||++.++.+|.++..
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 77799999999999999999999999999999554433466889999999999 6689999999999998764
No 311
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=3.7e-23 Score=236.66 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=128.6
Q ss_pred CCeEEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
.|.++++||+++|+.. .+ ++|++|++| +.++|+|+||||||||+|++ |+..+ +.+
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 3679999999999754 34 999999999 99999999999999999999 44332 222
Q ss_pred hCccccCCCCCC-ccHHH------------HH---HHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHPR-LPWFD------------LI---LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~~-l~~~d------------~i---~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.-.+|||+..-. -++.| ++ ....|..+ .+...-+.|||||| |+++|+++..+
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 223444443100 01111 22 12223333 34466788999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEec
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
|+++||||||++||+.+...+.+.+.+. .. |.|+|++||.+...+.||++++++.|++..+.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~-~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQI-LQ-GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHH-hc-CCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 9999999999999999999988866654 22 58999999999999999999999999998663
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.89 E-value=1e-22 Score=203.07 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=112.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCcc-------ccCC--C--CCCccHHHHH-----------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI----------- 398 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~-------vp~~--~--~~~l~~~d~i----------- 398 (620)
++||++++| ++++|+||||||||||+|++ |+..+- .|.. ++.. . ...++..+++
T Consensus 5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 789999999 99999999999999999999 555432 1211 0100 0 0112222322
Q ss_pred -------HHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007057 399 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (620)
Q Consensus 399 -------~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~ 470 (620)
...+++.+..++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+.+ .++|++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence 1223444556788999999999 589999999999999999999999999999988866665543 578999
Q ss_pred ccChh-HHhhccccceeeCceEEEec
Q 007057 471 THYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 471 TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
||+++ +..+|+++..+.+|++.+..
T Consensus 160 sH~~~~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 160 THNPRLIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred ECCHHHHHHhcCeeEEEECCeEEEeC
Confidence 99998 45799999999999987653
No 313
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-22 Score=187.45 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=136.1
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHH--------------------------HH
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------------------MS 378 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~--------------------------~a 378 (620)
|+++++++.||...+ +++++.+.| +.++++||+|+|||||+|++.|+-. +.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 678999999998766 999999999 9999999999999999999966532 11
Q ss_pred hhCccccCCC--CCCccHHH----------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 379 KAGLYLPAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 379 ~~G~~vp~~~--~~~l~~~d----------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
+.-..|++.. .+.+++.+ .++.++.+.+..++.+-.||||++ |++++++++.+|.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 1112233321 12222222 356677788899999999999999 6888999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEec
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~~ 495 (620)
++++||||+.|||+-...+.. +++.|...|.|-+++||..+++ ..+.++..+++|+++...
T Consensus 162 vllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred EEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeec
Confidence 999999999999999888888 7888999999999999999966 789999999999987654
No 314
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=8.6e-23 Score=205.00 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=115.5
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------HhhCccccCCCCC----CccH-----------
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP----RLPW----------- 394 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~~G~~vp~~~~~----~l~~----------- 394 (620)
|++.+| ++++|+||||||||||+|++ |+..+- .+.-.|+|+.... ..+.
T Consensus 1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 467889 99999999999999999999 765431 1112466665311 0111
Q ss_pred --------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 007057 395 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (620)
Q Consensus 395 --------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~ 459 (620)
+..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+.+.+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH
Confidence 22345566777778889999999999 588999999999999999999999999999999954 45
Q ss_pred HhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 460 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 460 l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+.+.|+|++||+.+ +..+|++++.+ +|++...
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 6666889999999998 66899999888 7888654
No 315
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=216.46 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=134.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-------------- 389 (620)
.+++++++|.|++... +|||++.+| ++.+|+|.||+||||||+++ .|.|.|.+|.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence 5789999999996544 999999999 99999999999999999999 7777777762
Q ss_pred -----------------CCccHHH------------------------HHHHHcCCchhhccccccchHHHHH-HHHHHH
Q 007057 390 -----------------PRLPWFD------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDILE 427 (620)
Q Consensus 390 -----------------~~l~~~d------------------------~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~ 427 (620)
..+++++ .+..+.|+.=+.+..++.||.|++| +.++.+
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 1112222 3445667777889999999999995 777788
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
+..++++|||||||+-|-|.+...|+. +++.+.+.|++||++||-+. +.++||+..++..|++.-
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999 77789999999999999986 779999999999998753
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=1.1e-22 Score=251.50 Aligned_cols=168 Identities=23% Similarity=0.289 Sum_probs=136.9
Q ss_pred CCeEEEeeeeeecC--Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------Hhh
Q 007057 324 NSEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 380 (620)
Q Consensus 324 ~~~l~~~~l~~~y~--~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------a~~ 380 (620)
...++++||+|.|+ ++.+ ++|+++.+| ++++|+||||||||||||++ |++.+- .+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence 45789999999995 3444 999999999 99999999999999999999 876431 122
Q ss_pred CccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
..++|+... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 246777641 11222 23456778888888999999999999 5999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+||||..+..+.+. +..++ .|.|+|++||+++. ..+||++..+.+|++...
T Consensus 1085 LDEPTSGLDp~sr~~l~~l-L~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDL-LLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred EECCCcCCCHHHHHHHHHH-HHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999994 44455 48899999999985 579999999999998765
No 317
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=3.4e-23 Score=221.98 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=132.9
Q ss_pred CCeEEEeeeeeecCCccc---cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccH-----
Q 007057 324 NSEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPW----- 394 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v---~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~----- 394 (620)
..++.+.||+|+|.+.+. +++|-+..+ ..++++||||+|||||||++ |.+.+. .|...|-.. ..+++
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H-~~~~~y~Qh~ 462 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSH-NKLPRYNQHL 462 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHHhhccccc--ccccccccc-ccchhhhhhh
Confidence 357899999999987643 899999999 89999999999999999999 444332 222222211 22222
Q ss_pred --------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 395 --------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 395 --------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
+..++.++|+. +....++++||+||+ |+.+++..+..|.+|||||||+|||+
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 23456677776 666789999999999 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCcc
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETL 498 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l 498 (620)
....+++++|-++ .+++|+||||.. +..+++.++...|+.+....+.+
T Consensus 543 ~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 543 ETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999876665 889999999998 66899999999999886655443
No 318
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-22 Score=193.56 Aligned_cols=161 Identities=19% Similarity=0.282 Sum_probs=129.8
Q ss_pred EEEeeeeeecCCcc--c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH---hh-----------CccccCC
Q 007057 327 MTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---KA-----------GLYLPAK 387 (620)
Q Consensus 327 l~~~~l~~~y~~~~--v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---~~-----------G~~vp~~ 387 (620)
+.+++++.+|+++. + ++|++|.+| +.++++||+||||||||+++ |++.+-. +. -..|+|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 45678899998776 3 999999999 99999999999999999999 4444310 00 0123333
Q ss_pred CCCCccHH------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 388 NHPRLPWF------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 388 ~~~~l~~~------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
. .-+||. .+++..+|+.+.-++.+-.|||||+ |+.++++++-+|.+++||||+.
T Consensus 83 ~-~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 83 E-ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred C-ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 2 333432 2456778888888999999999999 5889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCc
Q 007057 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENA 489 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g 489 (620)
.+|.-.++.+-..+++.....|..++++||+.+.+ -++++.+++..+
T Consensus 162 AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 162 ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 99999999999989988888899999999999866 568888777543
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.88 E-value=2.1e-22 Score=227.77 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=128.7
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 35899999999964 334 999999999 99999999999999999999 55432 11122
Q ss_pred ccccCCCCCCc-------------cHHHHHHHHcCCchhhccc-----cccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 382 LYLPAKNHPRL-------------PWFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 382 ~~vp~~~~~~l-------------~~~d~i~~~ig~~~~~~~~-----~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
.++|++.. -+ ..+.+.+..++.......+ ...|||||+ |++++++++.+|+++||||||+
T Consensus 400 ~~v~q~~~-lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 400 SAVFTDFH-LFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred EEEecChh-HHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 34554431 00 0122334455555443322 358999999 5999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||+.....+.+.+.+.+...+.|+|++||+.+....||+++.+++|++...
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999887766555457899999999988889999999999988654
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=2.6e-22 Score=227.42 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=128.1
Q ss_pred CeEEEeeeeeecCCc-----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------H
Q 007057 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M 377 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~-----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~ 377 (620)
+.++++||+++|++. ++ ++|+++++| ++++|+||||||||||++++ |+..+ +
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 468999999999752 34 999999999 99999999999999999999 44322 1
Q ss_pred HhhCccccCCCC-----C--Cc------cHHHHHHHHcCCchhhcc------ccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 378 SKAGLYLPAKNH-----P--RL------PWFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 378 a~~G~~vp~~~~-----~--~l------~~~d~i~~~ig~~~~~~~------~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.+.-.++|++.. . .. .-..+.+...++.+.+.. ....|||||+ |++++++++.+|+++||
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111123444320 0 00 011234555565554432 2368999999 59999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+++|+.....+.+.+++.+...+.|+|++||+.+....||+++.+++|++..+
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999887776555568899999999987789999999999988643
No 321
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.8e-22 Score=204.47 Aligned_cols=151 Identities=20% Similarity=0.173 Sum_probs=124.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------HHhhCccccCCCCCCccH---
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MSKAGLYLPAKNHPRLPW--- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------------------~a~~G~~vp~~~~~~l~~--- 394 (620)
++||+++.| ++++|.|-+|||||||+|++ +|+.+ ..+.-..|+|+. .-+|+
T Consensus 46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F-aLlPhrtV 123 (386)
T COG4175 46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF-ALLPHRTV 123 (386)
T ss_pred cceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh-ccccchhH
Confidence 899999999 99999999999999999999 66543 112223444442 22221
Q ss_pred ---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHH
Q 007057 395 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (620)
Q Consensus 395 ---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l 452 (620)
....+..+|+.++.++++..|||||+ |+.++++++++|+++|+|||+|.|||--+..+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 12457788999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 453 ATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 453 ~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
-+-+++.-.+..+|++|+|||++.+ ++.+++..+++|+++-.
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe
Confidence 9988876556688999999999865 89999999999998643
No 322
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=2.4e-22 Score=219.96 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=135.4
Q ss_pred CCCeEEEeeeeeecCC------c---c---c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH----------
Q 007057 323 ENSEMTVGSLSKGISD------F---P---V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------- 378 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~------~---~---v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---------- 378 (620)
+...++++||++.|+. . . | +|||.+.+| ++++|+|++||||||+.|+| ||..+-+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 3457889999999973 1 1 3 999999999 99999999999999999999 6665411
Q ss_pred -----------hhCccccCCCCCCc----cH----------------------HHHHHHHcCCch-hhccccccchHHHH
Q 007057 379 -----------KAGLYLPAKNHPRL----PW----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS 420 (620)
Q Consensus 379 -----------~~G~~vp~~~~~~l----~~----------------------~d~i~~~ig~~~-~~~~~~s~lSgg~k 420 (620)
+.-.+++|.++..+ ++ ++.++..+|+.. .+++++..|||||+
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 00012222221111 11 334577778776 58999999999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 421 -rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
|++++++++.+|.+||+|||++.||+.....+.+.+.+.-.+.|.|.||+|||+. +..+||++.+|.+|+++...
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 6999999999999999999999999999999999555544456899999999999 56899999999999987653
No 323
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.88 E-value=3.6e-22 Score=231.75 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=127.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 46899999999952 345 999999999 99999999999999999999 55543 1223
Q ss_pred CccccCCCCC-CccHHH--------------HHHHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCCc
Q 007057 381 GLYLPAKNHP-RLPWFD--------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d--------------~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
-.++||+... .-++.+ +++...|+.+.+ ...-+.|||||+ |++++++++.+|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3466665410 001122 233344444333 234467999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||++||+.....+.+.+.+. +.|+|++||.++....||+++.+++|++..+
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999988865443 5799999999997788999999999998755
No 324
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=4.3e-22 Score=225.22 Aligned_cols=168 Identities=24% Similarity=0.242 Sum_probs=127.8
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++|++++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 46899999999953 344 999999999 99999999999999999999 66542 1122
Q ss_pred CccccCCCCC-CccHHHHH---------------HH---------Hc--CCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFDLI---------------LA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~---------~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
..|+|++... .-++.+++ +. .+ |.+..+..+..+|||||+ |++++++++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 3466665410 00122222 11 12 222334456788999999 699999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|+|+.....+.+.+. .+...+.|+|++||+.+....||+++.+.+|++...
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999988554 455457899999999997788999999999988654
No 325
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.88 E-value=1.6e-22 Score=193.16 Aligned_cols=128 Identities=34% Similarity=0.470 Sum_probs=104.4
Q ss_pred ccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHh----------hCccccCCCCCCccHHHHHHHHcCCchhhcc
Q 007057 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410 (620)
Q Consensus 341 v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~----------~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~ 410 (620)
+++++.+.++ .+++|||||||||||+|++++++..+++ .|+++|+.. ..+ ++..++
T Consensus 12 ~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~------- 77 (162)
T cd03227 12 VPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ------- 77 (162)
T ss_pred eccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee-------
Confidence 4667777777 7999999999999999999999999998 888888764 333 333322
Q ss_pred ccccchHHHHH-HHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccce
Q 007057 411 NLSTFSGHISR-IVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (620)
Q Consensus 411 ~~s~lSgg~kr-l~~i~~l~~----~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~ 485 (620)
+|+||++ +.++++++. +|+++|+|||++|||+.++..+..++.+++.+ +.++|++||+.++...+++...
T Consensus 78 ----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~ 152 (162)
T cd03227 78 ----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIH 152 (162)
T ss_pred ----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEE
Confidence 8999995 555555543 88999999999999999999999988887766 7899999999998888887766
Q ss_pred ee
Q 007057 486 FE 487 (620)
Q Consensus 486 ~~ 487 (620)
+.
T Consensus 153 l~ 154 (162)
T cd03227 153 IK 154 (162)
T ss_pred EE
Confidence 53
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=3.2e-22 Score=227.05 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=119.5
Q ss_pred eeeeecCCc-cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-h--------------hC----------
Q 007057 331 SLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K--------------AG---------- 381 (620)
Q Consensus 331 ~l~~~y~~~-~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-~--------------~G---------- 381 (620)
+++++||.+ ++ +++ .+.+| ++++|+||||+|||||||++ |++.+-. . .|
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 488999864 34 888 79999 99999999999999999999 6654210 0 00
Q ss_pred -------ccccCCCCCCc------c------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 382 -------LYLPAKNHPRL------P------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 382 -------~~vp~~~~~~l------~------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.+.|+.. ... . .+++++..+|+....++.+++|||||+ +++++++++.+|+++
T Consensus 156 ~~~~~~~~~~~q~~-~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 156 YNGEIKVVHKPQYV-DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred hccCcceeecccch-hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1112211 000 1 123456678888888999999999999 588889999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
||||||+|||+..+..+.. ++..+.+ +.++|++||+++ +..++|++..+.+
T Consensus 235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999 5566777 899999999998 5688998877755
No 327
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.9e-22 Score=213.89 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=135.1
Q ss_pred CeEEEeeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCc
Q 007057 325 SEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~ 382 (620)
+.|+++||+++|+++. | ++||+|++| +.++|+|+|||||||+||++ ..... +.++..
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 4699999999998766 6 999999999 99999999999999999999 44321 456677
Q ss_pred cccCCCCCCcc--H------------HH---HHHHHcCCchhhc-----------cccccchHHHHH-HHHHHHhcCCCc
Q 007057 383 YLPAKNHPRLP--W------------FD---LILADIGDHQSLE-----------QNLSTFSGHISR-IVDILELVSRES 433 (620)
Q Consensus 383 ~vp~~~~~~l~--~------------~d---~i~~~ig~~~~~~-----------~~~s~lSgg~kr-l~~i~~l~~~~~ 433 (620)
+|||+. .-+. + ++ ++..+.|+.|.+. ..--.||||||| ++++++++.+|+
T Consensus 429 ~VPQd~-~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 429 VVPQDS-VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred EeCCcc-cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 999986 2221 1 12 2334455555433 344569999995 999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++++||||++||..+-..+...+.+ ...+.|+|++-|++.+..-||+++.++||++...
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 9999999999999999999997776 3347899999999999999999999999998754
No 328
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.2e-22 Score=215.18 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=130.7
Q ss_pred eEEEeeeeeecCCcc--c--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc--------
Q 007057 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-------- 393 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~--v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~-------- 393 (620)
.++++||+|+|.+.. + ++||++.+| +.++|+|++||||||+++++ .|.+.|++|...+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence 789999999997654 4 999999999 99999999999999999999 77777777632111
Q ss_pred ----------------HH-----H---------------HHHHHcCCch-----------hhccccccchHHHH-HHHHH
Q 007057 394 ----------------WF-----D---------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 394 ----------------~~-----d---------------~i~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i 425 (620)
.| + .++..+|+++ .+...-..|||||+ |++++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 01 1 2344455443 34455678999999 69999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEec
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
+.++++.+++||||||.||||.....+...+.+.+. ++|+|++||+..-.+.+|+++++++|++....
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence 999999999999999999999999999986666544 78999999999888899999999999987653
No 329
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3.4e-22 Score=197.49 Aligned_cols=144 Identities=20% Similarity=0.233 Sum_probs=123.2
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC------------------CccH---------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------RLPW--------- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~------------------~l~~--------- 394 (620)
++||++.+| +.++|+|+||||||||||+| +|.+.|.+|.. .++.
T Consensus 45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 999999999 99999999999999999999 88888887731 1111
Q ss_pred ------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q 007057 395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (620)
Q Consensus 395 ------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~ 461 (620)
+++|.+.-.+.+.++.|+.++|.||+ |++++.+...+|+++|+||..+--|+.-...-... +..+.
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r-l~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER-LNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH-HHHHH
Confidence 23344444567899999999999999 99999999999999999999999999998887774 44455
Q ss_pred cCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 462 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 462 ~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
+++.|+|+||||+. +.++|++...+++|.+.+..
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 56799999999998 78999999999999998864
No 330
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=6.7e-22 Score=224.92 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=130.0
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 46899999999964 334 999999999 99999999999999999999 55532 1122
Q ss_pred CccccCCCCC-CccH---------------HHHHHHHcCCchhhcc----------ccccchHHHH-HHHHHHHhcCCCc
Q 007057 381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 381 G~~vp~~~~~-~l~~---------------~d~i~~~ig~~~~~~~----------~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
-.++||+... .-++ +.+.+...++.+.+++ ....|||||+ |++++++++.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3456665410 0011 2234455566655544 5677999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+++|+.+...+.+++.+ +. .+.|+|++||+++....||+++.+++|++...
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~-~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAE-HA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-Hc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 9999999999999999999996655 33 37899999999997777999999999998754
No 331
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=4e-22 Score=232.21 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=127.5
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 46899999999974 345 999999999 99999999999999999999 66542 1223
Q ss_pred CccccCCCCC-CccHHH---------------HHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
..|+||+... .-++.+ +++...|+.+. +......|||||+ |++++++++.+|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 3466666410 001122 22333333332 3344577999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||++||+.....+.+.+.+ .++|+|++||.++....||+++.+++|++...
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999998886543 47899999999998888999999999998754
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.87 E-value=6.5e-22 Score=224.89 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=128.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|.+ .++ ++|+++++| +.++|+||||+|||||+|++ |+..+ +.+.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 45899999999964 344 999999999 99999999999999999999 77643 1223
Q ss_pred CccccCCCCC-CccH----------------HHHHHHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHP-RLPW----------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~-~l~~----------------~d~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
-.|+||++.. .-++ +.+++...|+.+.+ ...-..|||||+ |++++++++.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 4577776520 0011 22334444444332 223457999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEE
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
|+++||||||++||+.....+.+.+.+ +. .+.|+|++||+......||+++.+++|++..
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999886654 33 3689999999999889999999999998764
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.5e-22 Score=184.84 Aligned_cols=159 Identities=24% Similarity=0.252 Sum_probs=122.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC-------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~------------- 390 (620)
-+++.++|+.||...- ++||.+.+| ++++|+|.+||||||||++| ++-..|+.|.+
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~i--------s~rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCI--------SGRLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHH--------hcccCCCCCeEEEEcCCCCchhHh
Confidence 3567889999987543 999999999 99999999999999999999 44333433310
Q ss_pred ----------------------------------Ccc---------HHH-------HHHHHcCC-chhhccccccchHHH
Q 007057 391 ----------------------------------RLP---------WFD-------LILADIGD-HQSLEQNLSTFSGHI 419 (620)
Q Consensus 391 ----------------------------------~l~---------~~d-------~i~~~ig~-~~~~~~~~s~lSgg~ 419 (620)
.++ .+. ..+..+.+ .+.++..+.+|||||
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 000 001 11233332 246778899999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChhHHh-hccccceeeCceEEEe
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 494 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~l~~-~~~~~~~~~~g~~~~~ 494 (620)
+ |+.+++.+.+.|.|+++||||.|||..-...|.+ ++..|. +.+..++++|||+.+++ ++++...++.|.++..
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9 5888999999999999999999999999999999 555554 56889999999999775 6888888998887653
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=190.42 Aligned_cols=168 Identities=23% Similarity=0.259 Sum_probs=130.8
Q ss_pred eEEEeeeeeecCCc-cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------HHhh
Q 007057 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------~a~~ 380 (620)
.++++||+...+++ .+ ++|++|.+| ++.+|.||||||||||.++| |.-.+ .|+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 57899999999874 66 999999999 99999999999999999999 55432 5777
Q ss_pred CccccCCCCCCccH---------------------------HHHHHHHcCCch-hhccccc-cchHHHHH-HHHHHHhcC
Q 007057 381 GLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHISR-IVDILELVS 430 (620)
Q Consensus 381 G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~~-~~~~~~s-~lSgg~kr-l~~i~~l~~ 430 (620)
|.|+.-..++.++. .+..+..+++.. .+++.+. .||||+++ .-++..++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 77653222123321 122344555554 5566664 69999995 445566899
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhc--cccceeeCceEEEec
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFSL 495 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~--~~~~~~~~g~~~~~~ 495 (620)
+|+++|||||=||||...-..+++ .++.+.+.+..++++||+..+..+. |.+.++.+|++....
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 999999999999999999888888 6677888899999999999987765 788889999988764
No 335
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.87 E-value=7.5e-22 Score=225.22 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=127.4
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ ..+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 35899999999964 445 999999999 99999999999999999999 66543 12233
Q ss_pred ccccCCCCC-CccHHHH---------------HHHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDL---------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~---------------i~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+||+... .-++.++ .+...|+.+ .+......|||||+ |++++++++.+|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466666410 0011222 222333322 23344567999999 6999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||++||+.....+.+.+.+ +. .++|+|++||+.+....||+++.+.+|++...
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999886654 33 36899999999998888999999999988643
No 336
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=6.4e-22 Score=225.52 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=127.4
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 35899999999964 344 999999999 99999999999999999999 76643 1223
Q ss_pred CccccCCCCC-CccHHHH----------------HHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHP-RLPWFDL----------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~----------------i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
-.|+||+... .-++.++ .+...|+.+. +...-..|||||+ |++++++++.+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 3467776410 0011122 2233333322 2223366999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||++||+.....+.+++.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999986655 433 6899999999998888999999999988654
No 337
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=8e-22 Score=229.13 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=127.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 46899999999963 334 999999999 99999999999999999999 55432 1222
Q ss_pred CccccCCCCC-CccHHH---------------HHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
-.+|||+... .-++.+ +.+...|+.+. +......|||||+ |++++++++.+|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3455655310 001112 22333343332 2334568999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||++||+.....+.+.+.+ +.+ +.|+|++||+++....||+++.+++|++...
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~-~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKR-WLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999996554 433 6899999999998889999999999998654
No 338
>PLN03211 ABC transporter G-25; Provisional
Probab=99.87 E-value=4.5e-22 Score=228.43 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=130.2
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCC
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~ 387 (620)
..+|++++|+++.+ ++|+++.+| ++++|+|||||||||||+++ |...+- .+...|+|+.
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 35678899987766 999999999 99999999999999999999 765321 1112467765
Q ss_pred CC--CCccH------------------------HHHHHHHcCCchhh-----ccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 388 NH--PRLPW------------------------FDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 388 ~~--~~l~~------------------------~d~i~~~ig~~~~~-----~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.. ..+++ ++.++..+|+.+.. ++....|||||+ |++++++++.+|+++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 41 11222 22345556665443 345678999999 688999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeCceEEEec
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~g~~~~~~ 495 (620)
||||||+|||+.....+.+ ++..+.+.|.|+|++||+++ +..++|++..+.+|++.+..
T Consensus 229 lLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred EEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 9999999999999999999 55557767899999999985 56899999999999987764
No 339
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.7e-22 Score=186.58 Aligned_cols=149 Identities=26% Similarity=0.320 Sum_probs=119.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhh-hHH-------------------HHhhCccccCCCC---------CCc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL-ASL-------------------MSKAGLYLPAKNH---------PRL 392 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGl-i~~-------------------~a~~G~~vp~~~~---------~~l 392 (620)
++||.+.+| ++++||||+|||||||+|+++. +.+ ..|..+|+-|.+. ..+
T Consensus 21 ~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlif 99 (223)
T COG4619 21 NISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF 99 (223)
T ss_pred ceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcccc
Confidence 999999999 9999999999999999999943 322 1222233333320 111
Q ss_pred cH-----------HHHHHHHcCCchh-hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 007057 393 PW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (620)
Q Consensus 393 ~~-----------~d~i~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~ 459 (620)
|+ +-+.+.++++.+. +.+++..||||++ ++++++.+..-|.++||||||+.||+....++..-+.++
T Consensus 100 P~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 100 PWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred chHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 11 3356778877654 6889999999999 588889999999999999999999999999999988888
Q ss_pred HhcCCcEEEEEccChhH-HhhccccceeeCceE
Q 007057 460 LRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 491 (620)
Q Consensus 460 l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~ 491 (620)
...+...++.+|||.+. .+.+++++.+..|+.
T Consensus 180 v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 180 VREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 87888899999999986 689999999888765
No 340
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=1e-21 Score=223.83 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=126.8
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ ..+ ++|+++++| +.++|+||||||||||++++ |+..+ +.+.-
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999975 344 999999999 99999999999999999999 66543 11223
Q ss_pred ccccCCCCC-CccHHHHH---------------HHHcC-----------CchhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i---------------~~~ig-----------~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+|++... .-++.+++ +...+ .+..+......|||||+ |++++++++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466665410 01112221 11112 22234456678999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+.....+.+.+.+ +. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~-~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDA-LR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999886544 43 37899999999997778999999999998653
No 341
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1e-21 Score=224.22 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=125.4
Q ss_pred CeEEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||++.| +++++ ++||++++| +.++|+||||||||||++++ |+. + +.+.-
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 358999999755 45555 999999999 99999999999999999999 555 2 12223
Q ss_pred ccccCCCCC-CccHHHH---------------HHHHcCCc-----------hhhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~---------------i~~~ig~~-----------~~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.||||++.. .-++.++ .+...++. -.+...-..|||||+ |+++|++++.+|+
T Consensus 426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466665410 0011222 22222322 233345567999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||++||+.....+.+++.+ +. .+.|+|++||.++....||+++.+++|++...
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999986654 33 36899999999998888999999999988643
No 342
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-22 Score=214.97 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=131.2
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhh--hHHHHhhCccccCCCC-----------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGL--ASLMSKAGLYLPAKNH----------- 389 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGl--i~~~a~~G~~vp~~~~----------- 389 (620)
..|.+.+.+..||++.+ .-++++..| +.++|+||||+|||||||+|+- + .|+.+|++-.
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v-----~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQV-----SGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred cceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCc-----CccCchhheeccchHHHhhhh
Confidence 35778899999998776 888999999 9999999999999999999932 2 2344443320
Q ss_pred -CCc-------------------cHHHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 390 -PRL-------------------PWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 390 -~~l-------------------~~~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+.. .++++++..+|.. +...++..+||||-| |+++++++..+|+|||||||||+||..
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 000 0122355567765 456789999999999 899999999999999999999999986
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCccccchh
Q 007057 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLRPTYR 503 (620)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~l~~~y~ 503 (620)
. ++| +-.||...+.|+|+||||.. +..+|..++-+++-++..+.+++...++
T Consensus 233 a---v~W-Le~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 233 A---VAW-LENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred H---HHH-HHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 5 455 56678887899999999998 6789998888888777666666655444
No 343
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.87 E-value=1.3e-21 Score=227.77 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=128.2
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 46899999999963 445 999999999 99999999999999999999 66543 22233
Q ss_pred ccccCCCCC-CccH----------------HHHHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCC
Q 007057 382 LYLPAKNHP-RLPW----------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 382 ~~vp~~~~~-~l~~----------------~d~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
.|+||+... .-++ +.+.+...|+.+. +......|||||+ |++++++++.+|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 467776410 0011 1122333333322 3345578999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||++||+.....+.+.+.+ + .+.|+|++||+.+....||+++.+++|++...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999886654 3 36899999999998888999999999998754
No 344
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=212.76 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=128.4
Q ss_pred eEEEeeeeeecCCc-cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCc
Q 007057 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~ 382 (620)
.++.+|+++.|++. ++ ++|+++++| +.++|+||||||||||++.+ |+..+ +.+.-.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 45566999999764 44 999999999 99999999999999999999 66652 223345
Q ss_pred cccCCCCCCc-cH---------------HHHHHHHcCCch----------hhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 383 YLPAKNHPRL-PW---------------FDLILADIGDHQ----------SLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 383 ~vp~~~~~~l-~~---------------~d~i~~~ig~~~----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
+||+++...- ++ ..+++...|+.+ .+..+-+.+||||+ |++++++++.+++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 6666652100 11 112333333333 34445567999999 699999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+||||+|||.++-..+.+++.+ +.+ +.|+|++||+++...-+|+++++++|++...
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~-l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQE-LAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHH-HHh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 99999999999999999886665 454 4899999999999999999999999998765
No 345
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=1.4e-21 Score=223.15 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=127.7
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 45899999999964 345 999999999 99999999999999999999 55533 12233
Q ss_pred ccccCCCCCCc--cH--------------HHHHHHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHPRL--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+||+.. -+ ++ +.+++...|+.+.+ ......|||||+ |++++++++.+|+
T Consensus 418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 45666541 11 11 12234444444333 234467999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+++|+.....+.+.+.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999886554 433 5899999999998888999999999998754
No 346
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=2.2e-21 Score=223.23 Aligned_cols=168 Identities=20% Similarity=0.279 Sum_probs=135.7
Q ss_pred eEEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------H--
Q 007057 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M-- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~-- 377 (620)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |+..+ +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 5789999999953 234 999999999 99999999999999999999 77643 0
Q ss_pred --HhhCccccCCCC--CCccHHH---------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 378 --SKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+...|+|+... ..++..+ .++..+|+.+..++.+.+||+||+ ++.++++++.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 112346676542 1122222 235567777788999999999999 58999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEec
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
|+++||||||+|||+.....+.. +++.+++.+.|+|++||+.++...||+.+.+.+|++....
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNP 225 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999 5556666688999999999977789999999999987653
No 347
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=185.79 Aligned_cols=137 Identities=23% Similarity=0.289 Sum_probs=109.4
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC----------------
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH---------------- 389 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~---------------- 389 (620)
+.+|++...++.++ +++|++.+| +.+.|+||||+|||||||+| +|+.-|.+|.
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRil--------aGLl~p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRIL--------AGLLRPDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHH--------HcccCCCCCeEEecCCCCccchhhHH
Confidence 45667777776666 999999999 99999999999999999999 5544444441
Q ss_pred -------------CCccHHH------------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 390 -------------PRLPWFD------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 390 -------------~~l~~~d------------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
..++.++ +.++.+|+.+..+.++.+||.||+ |+++++-.+..++|.||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 1112222 346677888889999999999999 68888889999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
|||++++|......+.. ++..-..+|+.||++||..
T Consensus 155 DEP~taLDk~g~a~l~~-l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 155 DEPFTALDKEGVALLTA-LMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred cCcccccCHHHHHHHHH-HHHHHhcCCCEEEEecCCc
Confidence 99999999987777766 5554566689999999985
No 348
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=1.9e-21 Score=195.82 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=109.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHH-HHH---hhhHHH--------Hhh-CccccC--------------CC----CC
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLPA--------------KN----HP 390 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlL-k~i---Gli~~~--------a~~-G~~vp~--------------~~----~~ 390 (620)
++||++.+| ++++|+||||||||||+ .++ |-+.+. ... +.+.|. .. ..
T Consensus 13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 999999999 99999999999999996 333 211100 001 111121 11 01
Q ss_pred Ccc---------HH------------HHHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCC
Q 007057 391 RLP---------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD 445 (620)
Q Consensus 391 ~l~---------~~------------d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~--~LlLLDEpt~glD 445 (620)
... ++ .+.+..+++.+ ..++++++|||||+ +++++++++.+| +++||||||+|||
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 101 01 12334556655 47889999999999 588889999887 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee------eCceEEEe
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+.....+... +..+.+.|.|+|++||+++...+||++..+ .+|+++.+
T Consensus 172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEec
Confidence 9999999995 455666788999999999877899999999 77777653
No 349
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=1.8e-21 Score=226.42 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=125.1
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 46899999999964 345 999999999 99999999999999999999 66543 122
Q ss_pred hCccccCCCCC-CccHHH---------------HHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.-.|+||++.. .-++.+ +++...+..+. +......|||||+ |++++++++.+
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 33467766410 001112 23333343332 2334467999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+++|+.....+.+ . ....+.|+|++||+.+....+|+++.+++|++...
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~-~---~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE-S---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH-h---hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999988777766 2 22347899999999998888999999999998754
No 350
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=2.2e-21 Score=220.53 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=126.0
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++|++++|++ ..+ ++|+++++| +.++|+||||||||||++++ |+..+ +.+.
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 35889999999964 334 999999999 99999999999999999999 65532 1122
Q ss_pred CccccCCCCC-CccHHHH---------------HHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
..++|+++.. .-++.++ .+...+..+. +......|||||+ |++++++++.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 3456655310 0011222 2223333222 2344567999999 699999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+.+.+.+ +. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 99999999999999999999986544 43 47899999999987778999999999988754
No 351
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=196.35 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=132.5
Q ss_pred eEEEeeeeeecCCc----------cc-cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc--
Q 007057 326 EMTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-- 392 (620)
Q Consensus 326 ~l~~~~l~~~y~~~----------~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l-- 392 (620)
.++++|+++.|... .| +|||++.+| ++++|+|.+||||||+-|++ .|+.-|.+|...+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~g 74 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFEG 74 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEcC
Confidence 56788888888421 22 899999999 99999999999999999999 7777777663222
Q ss_pred ------------cHHHHHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 393 ------------PWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 393 ------------~~~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
..+.+++..+|+.. .+.+.+..|||||+ |+.++++++.+|+++++|||++.||...+..+.. ++.
T Consensus 75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~ 153 (268)
T COG4608 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLK 153 (268)
T ss_pred cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHH
Confidence 12445678888764 78999999999999 5888999999999999999999999999999999 666
Q ss_pred HHhc-CCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 459 YLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 459 ~l~~-~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
.+.+ .|.+.+++|||+.+ ..+||++.+|..|+++..
T Consensus 154 dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 154 DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191 (268)
T ss_pred HHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence 6765 48899999999995 478999999999988654
No 352
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=2.2e-21 Score=220.80 Aligned_cols=167 Identities=15% Similarity=0.187 Sum_probs=127.5
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+ +.+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 36899999999964 334 999999999 99999999999999999999 66543 112
Q ss_pred hCccccCCCCC-CccHHH---------------HHHHHcCCc-----------hhhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHP-RLPWFD---------------LILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d---------------~i~~~ig~~-----------~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.-.|+||++.. .-++.+ +.+...|.. ..+......|||||+ |++++++++.+
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 33467776410 001112 222233322 223345678999999 69999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....+|+++.+.+|++...
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~-~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALET-LM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999888885544 43 36899999999998888999999999998654
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.9e-21 Score=186.48 Aligned_cols=145 Identities=16% Similarity=0.280 Sum_probs=119.0
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------------------------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------------------------- 389 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-------------------------------- 389 (620)
.++++|..| +++.|+|.||||||||+++| +|-..|.+|.
T Consensus 24 ~~sL~I~~g-~FvtViGsNGAGKSTlln~i--------aG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 24 GLSLEIAEG-DFVTVIGSNGAGKSTLLNAI--------AGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred cCceeecCC-ceEEEEcCCCccHHHHHHHh--------hCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 899999999 99999999999999999999 4444444431
Q ss_pred CCccHHHHH---------------------------HHH--cCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcC
Q 007057 390 PRLPWFDLI---------------------------LAD--IGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDE 439 (620)
Q Consensus 390 ~~l~~~d~i---------------------------~~~--ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDE 439 (620)
..+++.+++ ++. .|++..++.++.-||||||| ++++++.+++|.+++|||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 122222221 222 35667888999999999998 889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEec
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~~ 495 (620)
-|+.|||.....+++.-.+...+.+.|++++||+++-+ .+.++.+.+.+|+++.|.
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999966665566678999999999844 899999999999998874
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.86 E-value=2.7e-21 Score=222.83 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=121.9
Q ss_pred CeEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--------hhCccccCCCCC-C
Q 007057 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP-R 391 (620)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--------~~G~~vp~~~~~-~ 391 (620)
+.++++||++.|+ +..+ ++|+++++| ++++|+||||||||||+|++ |+..+-. +...|+||+... .
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 4689999999995 4344 999999999 99999999999999999999 7654321 112467776410 0
Q ss_pred ccH----------------------HHHHHHHcCCchhhccc---------cccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 392 LPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 392 l~~----------------------~d~i~~~ig~~~~~~~~---------~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
-++ +.+++..+|+.+.++++ ..+|||||+ |++++++++.+|+++||||
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 011 12345556666555543 379999999 5899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
||+|||+.....+.+.+.+ .+.|+|++||+.++...||+++.+.
T Consensus 609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 9999999998888774433 3789999999999888999988774
No 355
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=186.79 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=132.0
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhhC
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~G 381 (620)
..++++||+++||+... ++||++.+| +.-+|+||||+||||+|..| |-..+ .|++|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 46789999999998554 999999999 99999999999999999999 44322 23333
Q ss_pred c-cccCCC--CCCccH-----------------------------HHHHHHHcCCchhhccccccchHHHHH-HHHHHHh
Q 007057 382 L-YLPAKN--HPRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHISR-IVDILEL 428 (620)
Q Consensus 382 ~-~vp~~~--~~~l~~-----------------------------~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l 428 (620)
. -.+|.+ +..+++ +|.+++.+|+.+..+...+.||-|||| +-+-+.+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 1 111111 011111 345678889999999999999999997 5555778
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+++|.|+++|||++|+--.+....++ ++..++. ..+++++.||++ +..+++++.++..|++...
T Consensus 163 ~Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 163 AQDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred ccCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 99999999999999999999999999 6666766 478999999999 5689999999999887553
No 356
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=3.4e-21 Score=223.89 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=127.8
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 46899999999953 334 999999999 99999999999999999999 65532 1223
Q ss_pred CccccCCCCC-CccHHH---------------HHHHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFD---------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d---------------~i~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
..|+|++... .-++.+ +.+...+..+ .+......|||||+ |++++++++.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3466665410 001111 2223333332 23455678999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||++||+.....+.+.+.+ +. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMRE-IC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHH-Hh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999996655 33 46899999999997777999999999998754
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=200.18 Aligned_cols=161 Identities=22% Similarity=0.322 Sum_probs=125.0
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc------------
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------------ 392 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l------------ 392 (620)
+.+.|++++|.+..+ ++.+++.+| +.++|+|||||||||+|++| .|..+|......+
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence 678999999977665 999999999 99999999999999999999 6666654331100
Q ss_pred c-----------------H----------------HH-------------------HHHHHcC-CchhhccccccchHHH
Q 007057 393 P-----------------W----------------FD-------------------LILADIG-DHQSLEQNLSTFSGHI 419 (620)
Q Consensus 393 ~-----------------~----------------~d-------------------~i~~~ig-~~~~~~~~~s~lSgg~ 419 (620)
. + ++ +++..+| ......+.+..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 0 0 00 1122222 2245678999999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEccChh-HHhhccccceeeCceEEEecC
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~-~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~ 496 (620)
+ |+++++++..+|+|+||||||+|||+....-|.. ||.+... ++++++|+.+ +..+|++++.+.+++..++.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee----~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE----YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH----HHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 9 7999999999999999999999999976665554 5555455 8999999999 779999999999988777766
Q ss_pred cccc
Q 007057 497 TLRP 500 (620)
Q Consensus 497 ~l~~ 500 (620)
++..
T Consensus 303 nydq 306 (614)
T KOG0927|consen 303 NYDQ 306 (614)
T ss_pred CHHH
Confidence 6543
No 358
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=4.2e-21 Score=216.37 Aligned_cols=158 Identities=18% Similarity=0.236 Sum_probs=119.1
Q ss_pred CeEEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++. ++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 358999999999752 34 999999999 99999999999999999999 65542 1222
Q ss_pred CccccCCCCC-CccHHH---------------HHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
-.|+||+... .-++.+ ..+...+..+. +......|||||+ |++++++++.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 3466665410 011122 23333344332 2335578999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccce
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~ 485 (620)
+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+++....||+++.
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999986655 33 47899999999987777887654
No 359
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=194.96 Aligned_cols=162 Identities=22% Similarity=0.334 Sum_probs=131.2
Q ss_pred eeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------HHhhCc----------cccC
Q 007057 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------MSKAGL----------YLPA 386 (620)
Q Consensus 331 ~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------~a~~G~----------~vp~ 386 (620)
|+.+.+|+..+.++|.++.. .+++|.|++||||||++++| ||..+ -+..|. ||+|
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34455566566889998874 59999999999999999999 77654 111222 4544
Q ss_pred CC--CCC---------------ccHHHHHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 387 KN--HPR---------------LPWFDLILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 387 ~~--~~~---------------l~~~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
+. ++. ...||++...+|++..+++.+++|||||+| +++.+++++.|.|+|||||.+.||..-
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 42 111 124889999999999999999999999995 777799999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 449 GVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 449 ~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+..+.- .++.|.+. ..-++.|||.++ +.++||++..++||++...
T Consensus 164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999988 67777764 567999999987 8899999999999998754
No 360
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.85 E-value=8.3e-21 Score=201.14 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=108.6
Q ss_pred EEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCCCC--CCccHH--------------------
Q 007057 356 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPWF-------------------- 395 (620)
Q Consensus 356 I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~~~--~~l~~~-------------------- 395 (620)
|+||||||||||||+| |+..+. .+...|+|+... ..+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999 776431 111235666531 112222
Q ss_pred -HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 396 -DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 396 -d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..+..+...+.+...+.+.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 2345666777778999999999999 58999999999999999999999999999999995554334458899999999
Q ss_pred hh-HHhhccccceeeCceEEEe
Q 007057 474 AD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 474 ~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+ +..+||++..+.+|++...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 97 5689999999999998654
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=1.8e-20 Score=211.37 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=110.3
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCc
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~ 382 (620)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-.
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 45899999999975 344 999999999 99999999999999999999 66543 112234
Q ss_pred cccCCCCC-CccHH---------------HHHHHHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCCCcE
Q 007057 383 YLPAKNHP-RLPWF---------------DLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 383 ~vp~~~~~-~l~~~---------------d~i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
||||++.. .-++. .+++...++.+.+. ..-..|||||+ |++++++++.+|++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 67776520 00112 22334444443332 33467999999 59999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+||||||++||+.....+.+.+.+ + ..+.|+|++||++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 999999999999999999886654 3 3368999999973
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=3.5e-20 Score=228.15 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=133.7
Q ss_pred CCeEEEeeeeeecC----Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH---H---------------HH
Q 007057 324 NSEMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---L---------------MS 378 (620)
Q Consensus 324 ~~~l~~~~l~~~y~----~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~---~---------------~a 378 (620)
...++++||++.|+ ++.+ ++|+.+.+| ++++|+|||||||||||++| |+.. + +.
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 34578999999995 2344 999999999 99999999999999999999 7763 1 11
Q ss_pred hhCccccCCCC--CCcc------------------------HHHHHHHHcCCchhhccccc----cchHHHH-HHHHHHH
Q 007057 379 KAGLYLPAKNH--PRLP------------------------WFDLILADIGDHQSLEQNLS----TFSGHIS-RIVDILE 427 (620)
Q Consensus 379 ~~G~~vp~~~~--~~l~------------------------~~d~i~~~ig~~~~~~~~~s----~lSgg~k-rl~~i~~ 427 (620)
+.-.|+||... ..++ .+++++..+|+.+..++.++ .|||||+ |+.++++
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 22347777531 1111 13455667777777777776 7999999 5888899
Q ss_pred hcCCCc-EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH--HhhccccceeeCc-eEEEec
Q 007057 428 LVSRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFENA-ATEFSL 495 (620)
Q Consensus 428 l~~~~~-LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l--~~~~~~~~~~~~g-~~~~~~ 495 (620)
++.+|+ +++|||||+|||+.....+.+ +++.+++.|.|||++||+++. ...+|++..+.+| ++.+..
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 999996 999999999999999999999 556677778999999999873 4789999999987 887653
No 363
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.83 E-value=3.1e-20 Score=211.11 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=126.1
Q ss_pred CeEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhh
Q 007057 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~ 380 (620)
+.++++||+++|+ ++.+ ++||++++| +.++|+||+||||||+++.+ ++..+ ..+.
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4589999999998 4555 899999999 99999999999999999999 55432 2233
Q ss_pred CccccCCCCCCc--cHHHH---------------HHH---------Hc--CCchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHPRL--PWFDL---------------ILA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~~l--~~~d~---------------i~~---------~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
+ +|||+.. -+ ++.++ .+. .+ |.+-.+..+-..|||||| |+++|++++.+
T Consensus 406 ~-~V~Qd~~-LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 406 G-IVSQDPL-LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred c-EEcccce-eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 3 6776541 11 11111 111 11 222233445578999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+++|+.+...+.+++.+ +. ++.|+|+++|.+....-||+++++++|++...
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999997664 44 35699999999986666999999999997654
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=170.89 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=123.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------HHhhC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------~a~~G 381 (620)
++.++||+.+.++... ++|++|.+| +++-|.||+||||||||.-+ |.+.. ..|.|
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 5678899988887776 899999999 99999999999999999988 55431 12333
Q ss_pred ccccCCC--CCCc--------------------cHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 382 LYLPAKN--HPRL--------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 382 ~~vp~~~--~~~l--------------------~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
. .+++. ++.+ ...+..++++|+....++.+.++||||+ |+++.++++..|++++||
T Consensus 81 i-LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 I-LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred e-eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 2 22221 1111 1244568899999999999999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHh
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~ 478 (620)
||++.||..-+..+.+-+...+...|.-+|.||||++-..
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999999888888888888999999986444
No 365
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=4.5e-20 Score=227.53 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=124.2
Q ss_pred eEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHh
Q 007057 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSK 379 (620)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~ 379 (620)
.++++||+++|++. .+ ++||++++| ++++|+||||||||||++++ |+..+ +.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 58999999999742 34 999999999 99999999999999999999 66532 112
Q ss_pred hCccccCCCCC-CccHHHHHH-----------------------------------------------------------
Q 007057 380 AGLYLPAKNHP-RLPWFDLIL----------------------------------------------------------- 399 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d~i~----------------------------------------------------------- 399 (620)
.-.+|||+... ..++.+++.
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 23466665410 012222221
Q ss_pred -------------HHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 007057 400 -------------ADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (620)
Q Consensus 400 -------------~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~ 454 (620)
...++.+. +....+.|||||+ |++++++++.+|++|||||||++||+.....+..
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 12222222 2356789999999 5999999999999999999999999999999988
Q ss_pred HHHHHHhc-CCcEEEEEccChhHHhhccccceeeCce
Q 007057 455 SILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (620)
Q Consensus 455 all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~ 490 (620)
++.+ +.+ .|.|+|++||+++....||+++.+.+|+
T Consensus 621 ~L~~-~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 621 TINN-LKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHH-HhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 5544 543 5789999999999778999999998874
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.82 E-value=4.3e-20 Score=182.06 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=102.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------H---------hhCccccCCCCCCcc--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------S---------KAGLYLPAKNHPRLP-- 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------a---------~~G~~vp~~~~~~l~-- 393 (620)
++++++.+| +++|+||||+||||||+++ |++... . ....++|+.....++
T Consensus 15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 567788887 8999999999999999999 554210 0 011245554422221
Q ss_pred ---HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 007057 394 ---WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (620)
Q Consensus 394 ---~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~ 465 (620)
..++++.. .+..++.+.+||+||+ +++++++++ .+|+++||||||+|+|+.....+.. ++..+.+ +.
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~ 167 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ET 167 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CC
Confidence 23444544 4456788999999999 577777764 5679999999999999999999999 5555555 58
Q ss_pred EEEEEccChhHHhhccccceee
Q 007057 466 LAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 466 ~vli~TH~~~l~~~~~~~~~~~ 487 (620)
++|++||++++..+||+++.+.
T Consensus 168 tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 168 QFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred EEEEEECCHHHHhhcceEEEEE
Confidence 9999999998777888876653
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=9.7e-20 Score=224.62 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=124.6
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------------
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------- 376 (620)
+.++++||+|+|.+ .+| ++||++++| +.++|+||+||||||+++++ |+..+
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 46899999999953 345 999999999 99999999999999999999 55443
Q ss_pred ---------------------------------------------------HHhhCccccCCCCC-CccHHHH-------
Q 007057 377 ---------------------------------------------------MSKAGLYLPAKNHP-RLPWFDL------- 397 (620)
Q Consensus 377 ---------------------------------------------------~a~~G~~vp~~~~~-~l~~~d~------- 397 (620)
+.+.-.||||++.. .-++.++
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 11122355555310 0111222
Q ss_pred --------HHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 007057 398 --------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (620)
Q Consensus 398 --------i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all 457 (620)
.....++.+. +...-..|||||+ |+++|++++.+|++|||||||++||+.+...+.+++.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 2222233222 2234567999999 5999999999999999999999999999999888665
Q ss_pred HHHh-cCCcEEEEEccChhHHhhccccceeeC----ceEE
Q 007057 458 QYLR-DRVGLAVVTTHYADLSCLKDKDTRFEN----AATE 492 (620)
Q Consensus 458 ~~l~-~~~~~vli~TH~~~l~~~~~~~~~~~~----g~~~ 492 (620)
+ +. ..+.|+|++||.++....||+++++.+ |+++
T Consensus 1403 ~-~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1403 D-IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred H-HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 4 43 357899999999998888999999998 7754
No 368
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=9e-20 Score=213.04 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=123.1
Q ss_pred CCCeEEEeeeeeecCCcc---c--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc-----
Q 007057 323 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL----- 392 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~~~---v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l----- 392 (620)
-++.++++||+|+|+.++ + ++||.+++| +.++|+|||||||||+++++ .++|-|.+|...+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence 457899999999998654 3 899999999 99999999999999999999 6666666652111
Q ss_pred ------------------------cHHHHHH---------------HHcCCch-----------hhccccccchHHHH-H
Q 007057 393 ------------------------PWFDLIL---------------ADIGDHQ-----------SLEQNLSTFSGHIS-R 421 (620)
Q Consensus 393 ------------------------~~~d~i~---------------~~ig~~~-----------~~~~~~s~lSgg~k-r 421 (620)
++.++|. ...+..+ .+-..--.|||||| |
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 1122221 0001111 11223345999999 6
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++++++++.+|++|||||||++||+.+...+.+|+ +.. ..|.|+|+++|.+...+-+|.+.++++|+++..
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999988888855 433 347799999999996666999999999998764
No 369
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.81 E-value=1e-19 Score=208.50 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=122.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCccccCCCC--CCccH-----
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLPW----- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~vp~~~~--~~l~~----- 394 (620)
++|+++.+| ++++|+|||||||||||+++ |.... ..+...|+|++.. ..+++
T Consensus 43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 999999999 99999999999999999999 65432 1122357777641 11121
Q ss_pred -------------------HHHHHHHcCCchhhccccc------cchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 395 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 395 -------------------~d~i~~~ig~~~~~~~~~s------~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
++.++..+|+.+..+..+. .+||||+ |+.++++++.+|++++|||||+|||+..
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 3456667777766666665 5999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeCceEEEec
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~g~~~~~~ 495 (620)
...+.+. ++.+.+.|.|+|++||++. +..++|++..+.+|++.+..
T Consensus 202 ~~~l~~~-L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 202 AYSVVQV-LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHHH-HHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 9999995 5557767899999999974 67899999999999998764
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=2e-19 Score=221.12 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=130.3
Q ss_pred eEEEeeeeeecC-------------Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------
Q 007057 326 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~-------------~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------- 376 (620)
.+..+||++... .+.+ ++|+.+.+| ++++|+|||||||||||++| |....
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 578899988763 2234 999999999 99999999999999999999 65431
Q ss_pred -----HHhhCccccCCCC--CCccH------------------------HHHHHHHcCCchhhcccc-----ccchHHHH
Q 007057 377 -----MSKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS 420 (620)
Q Consensus 377 -----~a~~G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~-----s~lSgg~k 420 (620)
..+.-.|+||... ..+++ +++++..+|+.+..++.+ +.||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 1122246776531 11111 334566677776666665 68999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeC-ceEEEec
Q 007057 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFSL 495 (620)
Q Consensus 421 -rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~-g~~~~~~ 495 (620)
|+.++++++.+|++++|||||+|||+.....+.+ +++.+.+.|.|||++||+++ +..++|+++.+.+ |++.+..
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 6888899999999999999999999999999999 55567777899999999986 4588999999986 7877653
No 371
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=8.8e-20 Score=215.98 Aligned_cols=168 Identities=23% Similarity=0.275 Sum_probs=138.7
Q ss_pred CeEEEeeeeeecCCcc--c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------------Hhh
Q 007057 325 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~--v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------------a~~ 380 (620)
..+.++|+++.|+... | ++++.+++| ++.+++|||||||||++|++ |...+- .++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 4678999999998764 6 999999999 99999999999999999999 665431 112
Q ss_pred CccccCCCC--CCcc---------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 381 GLYLPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 381 G~~vp~~~~--~~l~---------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
-+|.||... ..++ .++..+..+|+.+..+++++++|||+| ++..+.+++.+|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 236676531 0011 134556778888999999999999999 5999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~~~ 494 (620)
||||++|+||..+..++. ++..+.++|..+|+|||.++.. .+|++...+.+|++..-
T Consensus 722 LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred ecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 999999999999999988 6666777666999999999855 79999999999998774
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.5e-20 Score=170.23 Aligned_cols=152 Identities=19% Similarity=0.331 Sum_probs=119.8
Q ss_pred eEEEeeeeeecC-----Cc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC------
Q 007057 326 EMTVGSLSKGIS-----DF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------ 390 (620)
Q Consensus 326 ~l~~~~l~~~y~-----~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~------ 390 (620)
.+.++|++|+|- +. +| ++||++..| +++++-||+|+||||+||++ .|.|.|++|..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCc
Confidence 356778888772 21 23 899999999 99999999999999999999 77788877621
Q ss_pred -------------------CccHHH----------------------------------HHHHHcCCchh-hccccccch
Q 007057 391 -------------------RLPWFD----------------------------------LILADIGDHQS-LEQNLSTFS 416 (620)
Q Consensus 391 -------------------~l~~~d----------------------------------~i~~~ig~~~~-~~~~~s~lS 416 (620)
.++|+. .+++++++.+. ..-.++|||
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFS 154 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFS 154 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccC
Confidence 112222 23555555443 356899999
Q ss_pred HHHHH-HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceee
Q 007057 417 GHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE 487 (620)
Q Consensus 417 gg~kr-l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~ 487 (620)
||++| +.+++.++.+-.++||||||+.||...+..+.+ ++..-+..|+.++=+-||.++. .+||+...+.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99995 777789999999999999999999999999999 6666677889999999999965 6888876654
No 373
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5e-20 Score=192.34 Aligned_cols=155 Identities=23% Similarity=0.317 Sum_probs=120.1
Q ss_pred CeEEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC------CCccHH
Q 007057 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWF 395 (620)
Q Consensus 325 ~~l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~------~~l~~~ 395 (620)
.++-+.+|+|+| |.+++ .++|-|.-. ..++|+||||.||||||+++ .|-+-|..|. ..+++|
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CeeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeech
Confidence 367789999999 44444 888888877 78999999999999999999 7877787762 234555
Q ss_pred HHH-----------------------------HHHcCCchh-hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 396 DLI-----------------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 396 d~i-----------------------------~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
|+- +-.+|+... -.-.+..||||++ |++++-..+..|++|||||||++|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 532 223333222 2236778999999 888887788999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceeeCceEE
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATE 492 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~~g~~~ 492 (620)
|+.+..+|++||-+| .+.||+||||-.+. ..-...|++++..+.
T Consensus 736 DIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~ 780 (807)
T KOG0066|consen 736 DIESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGID 780 (807)
T ss_pred chhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCChh
Confidence 999999999998888 88899999997643 444456667776553
No 374
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=192.09 Aligned_cols=169 Identities=24% Similarity=0.264 Sum_probs=127.8
Q ss_pred CCeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
++.+.++++++.=.+ +++ ++||.+.+| +.++|+||+|||||||.|++ |...+ +.+
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 357778888775432 233 999999999 99999999999999999999 55433 222
Q ss_pred hCccccCCCCCCccHHHHHHHHcC---------------------------CchhhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHPRLPWFDLILADIG---------------------------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~~l~~~d~i~~~ig---------------------------~~~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
...|.||+-.-.-+-+.+-..+++ -+-.+-..-++|||||| |+++++++-.+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 233566642100001111112222 11234456689999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|.|++||||-++||...-.+|..++.. ++.+|+|+|++||...+...+|++..+.+|.+...
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 999999999999999999999998776 78889999999999999999999999999988654
No 375
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=201.83 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=124.7
Q ss_pred CCeEEEeeeeeecCCcc---c--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc------
Q 007057 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------ 392 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~---v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l------ 392 (620)
.|.++++||+|.|..++ | ++||+|++| ++++|+||||+||||+..++ .-+|-|++|...+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL--------~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLL--------LRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCCeEEECCeehh
Confidence 46899999999997653 4 999999999 99999999999999999999 5556666652111
Q ss_pred -----------------------cHHHHHH------------------------HHc--CCchhhccccccchHHHH-HH
Q 007057 393 -----------------------PWFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RI 422 (620)
Q Consensus 393 -----------------------~~~d~i~------------------------~~i--g~~~~~~~~~s~lSgg~k-rl 422 (620)
++-++|. ..+ |-+-.+..+-+.|||||| |+
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 1122221 000 111123456679999999 59
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++|++++.+|.++||||.|+.||.++-..+.+++-+ +.+ +.|||++.|.+...+-||.+.++++|++...
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~-~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDR-LMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH-hhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 999999999999999999999999988877775544 333 4899999999998899999999999998754
No 376
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=2.9e-19 Score=221.84 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=128.4
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ .+| ++||+|++| +.++|+||+|||||||++++ |+..+ +.+.
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 46999999999953 345 999999999 99999999999999999999 66532 2333
Q ss_pred CccccCCCCCCc--cH--------------HHHHHHHcCCchh-----------hccccccchHHHHH-HHHHHHhcCCC
Q 007057 381 GLYLPAKNHPRL--PW--------------FDLILADIGDHQS-----------LEQNLSTFSGHISR-IVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~-----------~~~~~s~lSgg~kr-l~~i~~l~~~~ 432 (620)
-.++||++. -+ ++ +.+.+...++.+. +..+.+.||||||| ++++++++.+|
T Consensus 1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 457788751 11 11 1123344444332 33445689999995 89999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+++|+.....+.+++.+. . .++|+|+++|.++....||+++++++|++...
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999988888755543 2 36899999999997777999999999998654
No 377
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=187.34 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=130.8
Q ss_pred CeEEEeeeeeecC----Ccc-c-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-------------------
Q 007057 325 SEMTVGSLSKGIS----DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------- 378 (620)
Q Consensus 325 ~~l~~~~l~~~y~----~~~-v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------------------- 378 (620)
..+.++|+++.|+ ... | ++||.+.+| +.++|+|.+|||||.....+ +|++..+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3578899999995 222 2 999999999 99999999999999999988 7765310
Q ss_pred ---------hhCccccCCCCCCccHHH--------------------------HHHHHcCCc---hhhccccccchHHHH
Q 007057 379 ---------KAGLYLPAKNHPRLPWFD--------------------------LILADIGDH---QSLEQNLSTFSGHIS 420 (620)
Q Consensus 379 ---------~~G~~vp~~~~~~l~~~d--------------------------~i~~~ig~~---~~~~~~~s~lSgg~k 420 (620)
.-...++|++...+..+. +++..+|+. ..++.++..|||||+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 001234454433332211 235556654 367899999999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 421 -rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|+.++++++++|+|+|.||||..||..-...|.+ +++.|. +.|..++++|||+. +..++|++.+|..|.+...
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 5778899999999999999999999999999999 666666 45889999999999 6689999999999988653
No 378
>PLN03130 ABC transporter C family member; Provisional
Probab=99.80 E-value=3.4e-19 Score=221.70 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=128.7
Q ss_pred CeEEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++. .| ++||+|++| +.++|+||+|||||||++++ |+..+ +.+.
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 579999999999642 45 999999999 99999999999999999999 66432 2333
Q ss_pred CccccCCCCCCc--cH--------------HHHHHHHcCCch-----------hhccccccchHHHHH-HHHHHHhcCCC
Q 007057 381 GLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHISR-IVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~-----------~~~~~~s~lSgg~kr-l~~i~~l~~~~ 432 (620)
-.++||++. -+ ++ +.+++...++.+ .+..+.+.||||||| ++++++++.+|
T Consensus 1315 IsiVpQdp~-LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1315 LGIIPQAPV-LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred cEEECCCCc-cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 457787752 11 11 112333444333 233455689999995 99999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++|||||||+++|+..-..+.+++.+. . .++|+|+++|.++...-||+++++++|++...
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999988888865543 2 36899999999997777999999999998654
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=4.9e-19 Score=184.41 Aligned_cols=171 Identities=17% Similarity=0.123 Sum_probs=133.1
Q ss_pred CCCeEEEeeeeeecCC------------ccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------
Q 007057 323 ENSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------ 376 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~------------~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------ 376 (620)
+...++.++|...|.- +.| ++|+++.+| +.++|+|.+|||||||=+++ +|+..
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc
Confidence 3457888998888731 113 899999999 99999999999999998887 55532
Q ss_pred ---------HHhhCccccCCCCCCcc----H-----------------------HHHHHHHcCCc-hhhccccccchHHH
Q 007057 377 ---------MSKAGLYLPAKNHPRLP----W-----------------------FDLILADIGDH-QSLEQNLSTFSGHI 419 (620)
Q Consensus 377 ---------~a~~G~~vp~~~~~~l~----~-----------------------~d~i~~~ig~~-~~~~~~~s~lSgg~ 419 (620)
+.+--..|+|+++..++ + +-..+..+|++ ...++++..|||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 11122345555533222 1 11245566754 46789999999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
+ |++++++++.+|.+++|||||+.||..-...+.+ +++.|.+ .+.+-+|+|||+. +..+|++++++.+|+++...
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 9 5999999999999999999999999999999998 6777765 4778999999999 56899999999999997653
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=8.4e-19 Score=179.52 Aligned_cols=95 Identities=29% Similarity=0.273 Sum_probs=80.8
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~---~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+..+|+.. .+++++++|||||+ |++++++++.+ |+++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 44667776 57899999999999 58888888875 79999999999999999999999 556677778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|++.+.
T Consensus 232 ~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 232 LDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977789999988 67777654
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=5.6e-19 Score=176.18 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=107.7
Q ss_pred eEEEeeeeeecCCccccccceec-CCceEEEEEcCCCCcHhHHHHHH-hhh-HHH---------HhhC---------ccc
Q 007057 326 EMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTL-GLA-SLM---------SKAG---------LYL 384 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v~vsl~i~-~g~~~~~I~GpNGsGKSTlLk~i-Gli-~~~---------a~~G---------~~v 384 (620)
.++++|+. +|.+. ..++|... +| ++++|+|||||||||+|++| +.+ ... ...- .++
T Consensus 5 ~i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (213)
T cd03279 5 KLELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFT 81 (213)
T ss_pred EEEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEE
Confidence 35677777 55332 24445443 36 79999999999999999999 221 000 0000 011
Q ss_pred cCCCCC--------CccH--HHHH--HHHcCCchhhccccccchHHHH-HHHHHHHhcC----------CCcEEEEcCCC
Q 007057 385 PAKNHP--------RLPW--FDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIG 441 (620)
Q Consensus 385 p~~~~~--------~l~~--~d~i--~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~----------~~~LlLLDEpt 441 (620)
++.... .++. +.+. +...+....+++++.+||+||+ +++++++++. +|+++||||||
T Consensus 82 f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~ 161 (213)
T cd03279 82 FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF 161 (213)
T ss_pred EEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence 111100 0110 1111 1222356677899999999999 5888888764 57899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCce
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
+|+|+.....+... +..+.+.+.|+|++||+++ +..+++++..+.+|.
T Consensus 162 ~~lD~~~~~~~~~~-l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 162 GTLDPEALEAVATA-LELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ccCCHHHHHHHHHH-HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 99999999999884 4556666889999999998 457788888777764
No 382
>PLN03130 ABC transporter C family member; Provisional
Probab=99.80 E-value=4.3e-19 Score=220.81 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=130.4
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-------hhCccccCCCCC-
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 390 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-------~~G~~vp~~~~~- 390 (620)
+.++++|++++|++ .++ ++|+++++| +.++|+||+|||||||++++ |...+.. ..-.|+||++..
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 46899999999964 344 999999999 99999999999999999999 7766543 122477776521
Q ss_pred CccH--------------HHHHHHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 391 RLPW--------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 391 ~l~~--------------~d~i~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
.-++ +++++...++.++ +..+-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 0111 2333444444332 3345567999999 699999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+..+..+...++..+. .+.|+|++||.......+|+++.+++|++...
T Consensus 772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 99999888765655433 46899999999998888999999999998754
No 383
>PLN03232 ABC transporter C family member; Provisional
Probab=99.80 E-value=6e-19 Score=219.13 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=129.4
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-------hhCccccCCCCC-
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 390 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-------~~G~~vp~~~~~- 390 (620)
+.++++|++++|++ .++ ++|+++++| +.++|+||+|||||||++++ |...+.. ..-.|+||++..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 46899999999964 344 999999999 99999999999999999999 6665431 122467776521
Q ss_pred CccH--------------HHHHHHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 391 RLPW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 391 ~l~~--------------~d~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
.-++ +++++...++.+++ ..+-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 0012 22333334443332 334567999999 699999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+.....+.+.++.... .+.|+|++||.......||+++.+++|++...
T Consensus 772 D~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred CHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 99999988776665433 46899999999998888999999999998754
No 384
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=7.1e-19 Score=218.53 Aligned_cols=167 Identities=13% Similarity=0.169 Sum_probs=129.3
Q ss_pred CCeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
.+.|+++||+++|++ ..+ ++||+|.+| +.++|+|++|||||||++++ |+..+ +.+
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 357999999999964 234 999999999 99999999999999999999 66532 233
Q ss_pred hCccccCCCCCCc--cH--------------HHHHHHHcCCchhh-----------ccccccchHHHHH-HHHHHHhcCC
Q 007057 380 AGLYLPAKNHPRL--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHISR-IVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~-----------~~~~s~lSgg~kr-l~~i~~l~~~ 431 (620)
.-.++||++. -+ ++ +.+.+...|+.+.+ ..+-+.||||||| ++++++++.+
T Consensus 1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 4457888752 11 11 12334444544332 2344689999995 8999999985
Q ss_pred -CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 -~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|++|||||||+++|+..-..+.+.+.+.+ .++|+|+++|.++....||+++++++|++...
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 89999999999999999998888655432 36899999999998888999999999998654
No 385
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.79 E-value=5.4e-19 Score=219.81 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=128.3
Q ss_pred eEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------hhCccccCCCCC-Ccc
Q 007057 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLP 393 (620)
Q Consensus 326 ~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~~G~~vp~~~~~-~l~ 393 (620)
.++++|++++|++ .++ ++|+++++| ++++|+|||||||||||+++ |++.+.. ....|+||++.. ..+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence 6899999999974 334 999999999 99999999999999999999 7665421 112467776421 111
Q ss_pred HHH--------------HHHHHcCC-----------chhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 394 WFD--------------LILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 394 ~~d--------------~i~~~ig~-----------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+.+ ++....++ ...+..+..+|||||+ |++++++++.+|+++||||||++||+.
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 222 22222221 1234566789999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 448 EGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all~~l-~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
....+.+.+.+.. ...+.|+|++||+.+....||+++.+.+|++...
T Consensus 795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 795 VGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 9999998776421 1236899999999997777999999999998754
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=1e-18 Score=216.88 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=129.3
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G 381 (620)
+.++++||+++|+. ..+ ++||+|++| +.++|+|++|||||||++++ |+... +.+.-
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 57999999999964 445 999999999 99999999999999999999 76531 22334
Q ss_pred ccccCCCCCCcc--H--------------HHHHHHHcCCchhh-----------ccccccchHHHHH-HHHHHHhcCCCc
Q 007057 382 LYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHISR-IVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~s~lSgg~kr-l~~i~~l~~~~~ 433 (620)
.++||++. -++ + +.+++...++.+.+ ...-..|||||+| ++++++++.+|+
T Consensus 1295 s~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1295 GVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred EEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 57888762 111 1 12345555554433 2233579999995 999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||||||+++|+..-..+...+.+.. .++|+|++||.++....+|+++++++|++...
T Consensus 1374 ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1374 ILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999888888555432 36899999999997777999999999998643
No 387
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.79 E-value=1.1e-18 Score=217.11 Aligned_cols=166 Identities=10% Similarity=0.042 Sum_probs=128.3
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ ..| ++||++++| +.++|+||+|||||||++++ ++..+ +.+.
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 57999999999964 245 999999999 99999999999999999999 66532 2333
Q ss_pred CccccCCCCCCc--cH--------------HHHHHHHcCCch-----------hhccccccchHHHHH-HHHHHHhcCCC
Q 007057 381 GLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHISR-IVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~-----------~~~~~~s~lSgg~kr-l~~i~~l~~~~ 432 (620)
-.++||++. -+ ++ +.+++...++.+ .+..+.+.||||||| ++++++++.+|
T Consensus 1362 i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1362 ITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred CeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 457888752 11 11 112333444332 233344679999995 99999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++|||||||+++|+..-..+.+++.+. . +++|+|+++|.++....+|+++++++|++...
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq~~l~~~-~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQSTIRTQ-F-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999988887755443 2 36899999999997778999999999998654
No 388
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=1.1e-18 Score=216.57 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=123.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh------hCccccCCCCC-CccHH
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLPWF 395 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~------~G~~vp~~~~~-~l~~~ 395 (620)
.+.++|+++.+ +++ ++||++++| ++++|+|||||||||||++| |++.+..- ...|+|+.+.. ..++.
T Consensus 428 ~~~~~~~s~~~--~~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 428 GLFFSNFSLYV--TPVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIK 504 (1490)
T ss_pred ccccccccccc--CcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHH
Confidence 45667776653 233 999999999 99999999999999999999 76654310 11366766421 01233
Q ss_pred HHH--------------HHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 396 DLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 396 d~i--------------~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
+++ +...++.+ .+..+..+|||||| |++++++++.+|+++|||||+++||+..+
T Consensus 505 eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~ 584 (1490)
T TIGR01271 505 DNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584 (1490)
T ss_pred HHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 332 22222222 23445689999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
..+.+.++..+.+ +.|+|++||+++....||+++.+.+|++...
T Consensus 585 ~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 585 KEIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 9999865554443 7899999999986677999999999988654
No 389
>PTZ00243 ABC transporter; Provisional
Probab=99.77 E-value=1.4e-18 Score=215.99 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=120.2
Q ss_pred ecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------HhhCccccCCCCC-CccHHHHH------
Q 007057 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDLI------ 398 (620)
Q Consensus 335 ~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------a~~G~~vp~~~~~-~l~~~d~i------ 398 (620)
.++++.+ ++||++++| ++++|+|||||||||||++| |++.+. .+...|+||.... ..++.+++
T Consensus 669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 3344444 999999999 99999999999999999999 766542 1122467776421 11222221
Q ss_pred --------HH---------Hc--CCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 399 --------LA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 399 --------~~---------~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
+. .+ |+...+..+..+|||||+ |++++++++.+|+++||||||++||+..+..+...++.
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 11 12 444456778899999999 69999999999999999999999999998888775543
Q ss_pred HHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 459 ~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
... .+.|+|++||+.++...||+++.+.+|++...
T Consensus 828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 322 37899999999997788999999999998765
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.3e-18 Score=184.18 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=124.9
Q ss_pred CeEEEeeeeeecCCcc--c--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC------CCccH
Q 007057 325 SEMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPW 394 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~--v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~------~~l~~ 394 (620)
..+++.+|++.|.... + .+++.++.. ..++++|+||+||||++|++ .|-.-|..+. ..+.+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~--------~~~l~~~rgi~~~~~r~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL--------KGDLTPTRGIVGRHPRLRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH--------hccCCcccceeeecccceecc
Confidence 4678889999996443 3 667777666 78899999999999999999 4433333321 11111
Q ss_pred ------------------------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 395 ------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 395 ------------------------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
+..-+.++|++ +...+++.+|||||+ |+++|.....+|.||+||||||
T Consensus 432 f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 432 FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 12235667765 345566899999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCc
Q 007057 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~ 497 (620)
+||..+-.+|..|+-.+ ++.||+||||.+ +..+|..+|.+++|+|.-..+.
T Consensus 512 hLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred cccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc
Confidence 99999999999987665 888999999999 5589999999999999754333
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=2e-18 Score=172.06 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=102.4
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhh------HHH-HhhCccccCCCCC--Cc---
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP--RL--- 392 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli------~~~-a~~G~~vp~~~~~--~l--- 392 (620)
+.++|.. +|++..+ ++++ ++++|+|||||||||+|++|..+ ... .+.| ++|+.+.. .+
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 4455554 6655444 5554 58999999999999999998322 011 1122 23333210 00
Q ss_pred ---cHH-------------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhc----CCCcEEEEcC
Q 007057 393 ---PWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDE 439 (620)
Q Consensus 393 ---~~~-------------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~----~~~~LlLLDE 439 (620)
-+| ..+...+++.+..++.++.||+||+ ++.++++++ .+|+++++||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 001 1122334455566778899999999 577777775 3579999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
||+|+||.....+.. ++..+.+ ++++|++||+.++..+||++..+
T Consensus 158 Pt~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~ 202 (212)
T cd03274 158 IDAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGI 202 (212)
T ss_pred CCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEE
Confidence 999999999999998 4455554 67899999998888999998765
No 392
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=5.1e-18 Score=172.30 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=64.5
Q ss_pred hccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 408 ~~~~~s~lSgg~k-rl~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.+.++.+|||||+ +++++++++ .+|+++|+||||+|+||.....+...+ ..+.+ +.++|++||..++..+||+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence 3578899999999 588888875 468999999999999999999999854 44555 6788999999888889998
Q ss_pred ccee
Q 007057 483 DTRF 486 (620)
Q Consensus 483 ~~~~ 486 (620)
++.+
T Consensus 230 i~~l 233 (243)
T cd03272 230 FYGV 233 (243)
T ss_pred EEEE
Confidence 8765
No 393
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.8e-18 Score=177.19 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=130.2
Q ss_pred eEEEeeeeeecCCc--cc-cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc----------
Q 007057 326 EMTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL---------- 392 (620)
Q Consensus 326 ~l~~~~l~~~y~~~--~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l---------- 392 (620)
.++++||.+.|.+. .+ |||++|.+| +++.|+|.|||||||+++.+ .|.|.|++|...+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence 47899999999765 24 999999999 99999999999999999999 9999999874222
Q ss_pred ----cHHHHHHHHcCC-------ch---------------------hhcc--ccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 393 ----PWFDLILADIGD-------HQ---------------------SLEQ--NLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 393 ----~~~d~i~~~ig~-------~~---------------------~~~~--~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
..|..+|++..+ ++ ..+. ..-.||.||| |++.+.+++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 123334433211 10 0011 2346799999 79999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEE
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
||=.+.-||.-+..+...++-.+++.|+||+.+|||-.--..||+...++||++..
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999977677899999999998754
No 394
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=2.4e-18 Score=211.62 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=117.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCccccCCCC--CCccH-----
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~vp~~~~--~~l~~----- 394 (620)
++|+.+++| ++++|+||||||||||||++ |++..- .+.-.|+|+... ..+++
T Consensus 183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 999999999 99999999999999999999 765321 111235555420 11111
Q ss_pred --------------------------------------------------HHHHHHHcCCchhh-----ccccccchHHH
Q 007057 395 --------------------------------------------------FDLILADIGDHQSL-----EQNLSTFSGHI 419 (620)
Q Consensus 395 --------------------------------------------------~d~i~~~ig~~~~~-----~~~~s~lSgg~ 419 (620)
.+.++..+|+.+.. +..+..+||||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 13355566765433 45668999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccCh--hHHhhccccceeeCceEEEec
Q 007057 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 420 k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~--~l~~~~~~~~~~~~g~~~~~~ 495 (620)
| |+.++.+++.+|+++++||||+|||+.....+.+. ++.+.+ .|.|+|+++|+. ++..++|+++.+.+|++.+..
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~-Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G 420 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC-LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeC
Confidence 9 68888999999999999999999999999999995 455554 578999999985 467899999999999998764
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.75 E-value=4.5e-18 Score=168.58 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=96.7
Q ss_pred ccceecCCceEEEEEcCCCCcHhHHHHHHh-----hhHHHH-------hh---C------ccccCCC-CC------CccH
Q 007057 343 IDIKVECETRVVVITGPNTGGKTASMKTLG-----LASLMS-------KA---G------LYLPAKN-HP------RLPW 394 (620)
Q Consensus 343 vsl~i~~g~~~~~I~GpNGsGKSTlLk~iG-----li~~~a-------~~---G------~~vp~~~-~~------~l~~ 394 (620)
.++++.+| +++|+||||+||||||++|. ....-. +. + .++++.. .. .+.+
T Consensus 16 ~~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 16 SEIEFFSP--LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred eEEecCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 34556666 99999999999999999982 221100 00 0 0111111 00 1123
Q ss_pred HHHHHHH--cCCchhhccccccchHHHHH-------HHHHHHhcCCCcEEEEcCCCCCCCHHHHH-HHHHHHHHHHhcC-
Q 007057 395 FDLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLRDR- 463 (620)
Q Consensus 395 ~d~i~~~--ig~~~~~~~~~s~lSgg~kr-------l~~i~~l~~~~~LlLLDEpt~glD~~~~~-~l~~all~~l~~~- 463 (620)
++++... -.....+++.+++||+||++ ++++++++.+|+++|+|||+++||+.... .+.. ++..+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~~ 172 (204)
T cd03240 94 LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQK 172 (204)
T ss_pred hhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhcc
Confidence 3333110 01123457889999999996 35667789999999999999999999999 8888 45556654
Q ss_pred CcEEEEEccChhHHhhccccceeeC
Q 007057 464 VGLAVVTTHYADLSCLKDKDTRFEN 488 (620)
Q Consensus 464 ~~~vli~TH~~~l~~~~~~~~~~~~ 488 (620)
+.++|++||++++...|++++.+..
T Consensus 173 ~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 173 NFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CCEEEEEEecHHHHhhCCEEEEEee
Confidence 7899999999987778888877643
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=2e-18 Score=161.76 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=115.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCccccCCC--CCCc--------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAKN--HPRL-------- 392 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~vp~~~--~~~l-------- 392 (620)
|++..+..| +++-++|||||||||||-.+ |+++. +|+...|..+.. ...+
T Consensus 17 plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L 95 (248)
T COG4138 17 PLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTL 95 (248)
T ss_pred ccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhh
Confidence 899999999 99999999999999999988 66642 222222222211 1112
Q ss_pred --------cHHHHHHHHcCCchhhccccccchHHHHH-HHHHHHhc-------CCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 007057 393 --------PWFDLILADIGDHQSLEQNLSTFSGHISR-IVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSI 456 (620)
Q Consensus 393 --------~~~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~-------~~~~LlLLDEpt~glD~~~~~~l~~al 456 (620)
+.+++|...+++.|.+.+.++.||||+-| +.++...+ ....|+|+|||.++||.....++-. +
T Consensus 96 ~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr-l 174 (248)
T COG4138 96 HQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR-L 174 (248)
T ss_pred cCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH-H
Confidence 23456777889999999999999999984 55543321 2346999999999999988777766 8
Q ss_pred HHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 457 l~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+..+...|.+|||++||++ ..+.+++.+.+..|++...
T Consensus 175 l~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred HHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence 8889999999999999998 5688999999998887654
No 397
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=1.4e-17 Score=157.20 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=126.8
Q ss_pred EEEeeeeeecCCc----------cc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------
Q 007057 327 MTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------- 377 (620)
Q Consensus 327 l~~~~l~~~y~~~----------~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------- 377 (620)
++++|++|.|... .| ++||+++.| +.++|+|.||||||||.|++ |.+.+-
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4567777777421 23 999999999 89999999999999999999 555431
Q ss_pred --HhhCccccCCCCCCccH-----------------------HHHH---HHHcCC-chhhccccccchHHHH-HHHHHHH
Q 007057 378 --SKAGLYLPAKNHPRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 378 --a~~G~~vp~~~~~~l~~-----------------------~d~i---~~~ig~-~~~~~~~~s~lSgg~k-rl~~i~~ 427 (620)
++..-.+++++...+.. -.+| +..+|+ .|..+-++..+|.||+ |++++++
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA 163 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA 163 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence 11111223322111111 1122 344554 3567789999999999 6999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
++-+|+++|.||..++||...+..|...+++.-.+.|...|.||.++. ++.++|.++++..|+|+...
T Consensus 164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999777744456888999999988 77899999999999987654
No 398
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=2e-17 Score=188.48 Aligned_cols=152 Identities=22% Similarity=0.317 Sum_probs=125.2
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCccccCCCC--CCcc------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLP------ 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~vp~~~~--~~l~------ 393 (620)
+++..+.+| +++||.||+||||||||+++ |...- +.++-.||+|+.. ..++
T Consensus 48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~ 126 (613)
T KOG0061|consen 48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLR 126 (613)
T ss_pred CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHH
Confidence 999999999 99999999999999999999 44321 2233457777641 1111
Q ss_pred ------------------HHHHHHHHcCCchhhccccc-----cchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 007057 394 ------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (620)
Q Consensus 394 ------------------~~d~i~~~ig~~~~~~~~~s-----~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~ 449 (620)
.+++++..+|+..-.+..++ .+||||+ |++.+..++++|.++++||||+|||....
T Consensus 127 f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA 206 (613)
T KOG0061|consen 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 (613)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence 25678888998877777776 4999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeCceEEEec
Q 007057 450 VALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 450 ~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~g~~~~~~ 495 (620)
..+.. +++.+++.|.|||++=|.+. +-.+.|+...+.+|++.|..
T Consensus 207 ~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 207 LQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999 56667777999999999985 67899999999999998875
No 399
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=1.6e-17 Score=204.87 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=118.1
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH----H-----------H---H----hhCccccCCCC--CCccH--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----L-----------M---S----KAGLYLPAKNH--PRLPW-- 394 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~----~-----------~---a----~~G~~vp~~~~--~~l~~-- 394 (620)
++|+.+.+| ++++|+||||||||||||+| |+.. . + . +...|+|+... ..+++
T Consensus 79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 899999999 99999999999999999999 7641 1 1 0 11246666531 11111
Q ss_pred ---------------------------HHHHHHHcCCchhhccc-----cccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 395 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 395 ---------------------------~d~i~~~ig~~~~~~~~-----~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
.+.++..+|+.+..++. +..|||||| |+.++++++.+|++++|||||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 12355667777655544 467999999 688889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccCh-h-HHhhccccceeeCceEEEec
Q 007057 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA-D-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~-~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
+|||+.....+.+ +++.+.+ .|.|+|+++|+. + +..++|++..+.+|++.+..
T Consensus 238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 9999999999999 5555665 488999999996 3 67899999999999988764
No 400
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=4.1e-17 Score=166.42 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=64.3
Q ss_pred cccccchHHHH-HHHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccc
Q 007057 410 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (620)
Q Consensus 410 ~~~s~lSgg~k-rl~~i~~l~~----~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~ 484 (620)
+++..||+||+ +++++++++. +|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++...||+++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 34589999999 5777787765 489999999999999999999998 44556666889999999988888899887
Q ss_pred eee
Q 007057 485 RFE 487 (620)
Q Consensus 485 ~~~ 487 (620)
.+.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 653
No 401
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=4.5e-17 Score=166.49 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=65.6
Q ss_pred hhhccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhc
Q 007057 406 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (620)
Q Consensus 406 ~~~~~~~s~lSgg~k-rl~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~ 480 (620)
+..+..+..||+||+ +++++++++ .+|+++|+||||+|||+.....+... +..+.+ |.++|++||+.++...|
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~-l~~~~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRM-IKTHFK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHcC-CCEEEEEECCHHHHHhC
Confidence 445678999999999 477777765 67899999999999999999999994 444543 78999999998888889
Q ss_pred ccccee
Q 007057 481 DKDTRF 486 (620)
Q Consensus 481 ~~~~~~ 486 (620)
|+++.+
T Consensus 236 d~v~~~ 241 (251)
T cd03273 236 NVLFRT 241 (251)
T ss_pred CEEEEE
Confidence 988664
No 402
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=3.4e-17 Score=191.66 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=124.8
Q ss_pred CCeEEEeeeeeecCCcc---c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh-------H------------HHH
Q 007057 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------S------------LMS 378 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~---v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli-------~------------~~a 378 (620)
+|.++++||+|.|..++ | ++|+++.+| +.++|+||+||||||.+.++ -.. . .+.
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 35799999999997654 3 999999999 99999999999999999998 121 1 122
Q ss_pred hhCccccCCCCCCc--cHHHHHHHH----------------------cCCch----hhccccccchHHHH-HHHHHHHhc
Q 007057 379 KAGLYLPAKNHPRL--PWFDLILAD----------------------IGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 379 ~~G~~vp~~~~~~l--~~~d~i~~~----------------------ig~~~----~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
+.-..|.|++ .-+ ++.++|.-- .++.+ .+-..-..|||||| |+++|++++
T Consensus 1064 ~~i~lVsQEP-~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1064 KQIGLVSQEP-VLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred HhcceeccCc-hhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 2223555554 111 122222110 01112 23345568999999 599999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
.+|++|||||-|+.||.++-..+-+| ++... .|.|+|++.|.+...+-||.+.+++||++...
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeA-Ld~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEA-LDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHH-HHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999988888775 44433 37899999999999999999999999998765
No 403
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.8e-17 Score=173.15 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=124.3
Q ss_pred CCCeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-------H------------HHh
Q 007057 323 ENSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-------L------------MSK 379 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-------~------------~a~ 379 (620)
.+|.++++||+|.|+. ++| ++||++.+| +.++|+||+|+||||+||.+ .+.. + +.+
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred cCCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 4578999999999964 555 999999999 99999999999999999998 2221 1 333
Q ss_pred hCccccCCCCCCcc--HH------------H---------HHHHHc-CCch----hhccccccchHHHH-HHHHHHHhcC
Q 007057 380 AGLYLPAKNHPRLP--WF------------D---------LILADI-GDHQ----SLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 380 ~G~~vp~~~~~~l~--~~------------d---------~i~~~i-g~~~----~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
....|||+. .-+. ++ + +|.+++ +..+ .+-..--.||||+| |++.++.++.
T Consensus 613 ~IGVVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 613 SIGVVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred hcCcccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 344789875 1110 00 1 122221 1122 12223346999999 5888899999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
.|.+++|||.|+.||.....+|-.++. .+.. +.|.|++.|.+.-.--||.+..+++|.+...
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~-rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALA-RLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHH-HHhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 999999999999999999888877544 4555 4688999999887777899999999988654
No 404
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=7.5e-17 Score=170.30 Aligned_cols=153 Identities=25% Similarity=0.315 Sum_probs=115.0
Q ss_pred eEEEeeeeeecCCccccc-cceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------C
Q 007057 326 EMTVGSLSKGISDFPVPI-DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------P 390 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v~v-sl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~--------------~ 390 (620)
.++-.+++|.||+....+ .=++..| ++++++||||-|||||.|++ +|...|.++. +
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~L--------AG~ikPdeg~~~~~~vSyKPQyI~~ 412 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLL--------AGVIKPDEGSEEDLKVSYKPQYISP 412 (591)
T ss_pred eeecchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHH--------hccccCCCCCCccceEeecceeecC
Confidence 344556777777533311 1234456 99999999999999999999 5554444431 1
Q ss_pred Cc-------------------cHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 391 RL-------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 391 ~l-------------------~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
.. .+..+++..+.+++.+++++..||||+. |++.+++++.+++++|||||.++||.+.+.
T Consensus 413 ~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 413 DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred CCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 10 0123455566778889999999999998 588889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChhHH-hhccccceee
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE 487 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~l~-~~~~~~~~~~ 487 (620)
..+.+|-+.....+.|.+++-||..+. -++|+..+|.
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999977776667788999999999865 4577766654
No 405
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=1.2e-16 Score=157.60 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=94.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHH--------------HHhhCc------cccCCC--CC-CccHH--H
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------MSKAGL------YLPAKN--HP-RLPWF--D 396 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~--------------~a~~G~------~vp~~~--~~-~l~~~--d 396 (620)
+.++.+.+| +.+|+||||+||||+|.++.+..- +-+.|. ..+..+ .. ..... +
T Consensus 14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 455666666 789999999999999999843210 000110 011110 00 01111 2
Q ss_pred HHHHHcCCchhhccccccchHHHHH-HHHHHHh----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEE
Q 007057 397 LILADIGDHQSLEQNLSTFSGHISR-IVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV 469 (620)
Q Consensus 397 ~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l----~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~--~~~~vli 469 (620)
++.+.+...+..++++.+||+||++ +++++++ +.+|+++||||||+|+|+.....+.+.+.+...+ .+.++|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2223333355678899999999994 7777776 6999999999999999999999999966664444 2358999
Q ss_pred EccChhHHhhccccceee
Q 007057 470 TTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 470 ~TH~~~l~~~~~~~~~~~ 487 (620)
+||+++...-.|++.++.
T Consensus 172 ~th~~~~i~~~d~v~~~~ 189 (198)
T cd03276 172 TPQDISGLASSDDVKVFR 189 (198)
T ss_pred ECCcccccccccceeEEE
Confidence 999998544346665554
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.67 E-value=5.8e-17 Score=149.58 Aligned_cols=100 Identities=27% Similarity=0.486 Sum_probs=74.2
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCccccCCCC--CCcc------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLP------ 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~vp~~~~--~~l~------ 393 (620)
++|+++.+| ++++|+||||||||||++++ |+..+ ..+...++|+... ..+.
T Consensus 3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999 99999999999999999999 66542 1222234554421 1122
Q ss_pred --HHHHHHHHcCCchhhcccc----ccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 007057 394 --WFDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 394 --~~d~i~~~ig~~~~~~~~~----s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~ 442 (620)
.+++++..++..+..+..+ +.||+||+ +++++++++.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1334566777655555555 99999999 5999999999999999999996
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.2e-15 Score=179.49 Aligned_cols=95 Identities=28% Similarity=0.236 Sum_probs=79.8
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcC---CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~---~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+..+|+.. .+++++++|||||+ |+.++++++. +|+++||||||+|||+.+...+... +..+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~-L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEV-LQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCC
Confidence 44567664 47889999999999 5888888876 5899999999999999999999994 55567778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|++.+.
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 9977789999999 57777764
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=1.4e-15 Score=179.17 Aligned_cols=95 Identities=26% Similarity=0.252 Sum_probs=80.7
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcCCC---cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~---~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+..+|+.. .+++++++|||||+ |+.++++++.+| +++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 44556664 47889999999999 588889999998 9999999999999999999999 555577778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|++.+.
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977789999998 57777664
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.8e-16 Score=162.20 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=117.3
Q ss_pred EEEeeeeeecCCc--cccccceecCCceEEEEEcCCCCcHhHHHHHHhhhH--HHHhhCc-cccCC----CCCCc-----
Q 007057 327 MTVGSLSKGISDF--PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLAS--LMSKAGL-YLPAK----NHPRL----- 392 (620)
Q Consensus 327 l~~~~l~~~y~~~--~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~--~~a~~G~-~vp~~----~~~~l----- 392 (620)
|.++|.+.+-.++ +|+.++.|-.| +.++++||||-|||||||.||--. +...+.. +.-++ ..+.+
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 4566666655433 45899999999 999999999999999999994221 1000000 00000 00000
Q ss_pred ----------------------------------------------cHHHHHHHHcCCc-hhhccccccchHHHH-HHHH
Q 007057 393 ----------------------------------------------PWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (620)
Q Consensus 393 ----------------------------------------------~~~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~ 424 (620)
+...+|++-+|.+ +..+++...||||.+ |+++
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 0012345555554 345788899999999 8999
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEecCc
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~~~ 497 (620)
++++..+|.|++|||||+|||... +.| +-.||.....|.+|||||.. +..+|+.++-+.+.++.++.++
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNA---VIW-LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNA---VIW-LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred HHHHhcCceeeeecCCccccccce---eee-hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 999999999999999999999854 444 55677777889999999988 6689999888877766555443
No 410
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=3.4e-15 Score=182.98 Aligned_cols=96 Identities=24% Similarity=0.237 Sum_probs=80.6
Q ss_pred HHHHcCCchh-hccccccchHHHH-HHHHHHHhc---CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 007057 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 398 i~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~---~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH 472 (620)
.+..+|+.+. +++++.+|||||+ |++++++++ .+|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3456677765 7899999999999 588888886 6999999999999999999999999 55667777889999999
Q ss_pred ChhHHhhccccceee------CceEEEe
Q 007057 473 YADLSCLKDKDTRFE------NAATEFS 494 (620)
Q Consensus 473 ~~~l~~~~~~~~~~~------~g~~~~~ 494 (620)
++++..+||+++.+. +|++...
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEe
Confidence 999668999999885 5666543
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=2.5e-15 Score=158.90 Aligned_cols=125 Identities=26% Similarity=0.327 Sum_probs=101.6
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--------------------------------------
Q 007057 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------------------------------- 389 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-------------------------------------- 389 (620)
.+| ++++|+||||-||||.+|++ +|..+|.-|.
T Consensus 98 r~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 98 RPG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence 357 99999999999999999999 5555554321
Q ss_pred --------------------CCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 390 --------------------PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 390 --------------------~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
..-+.+|.+.+.+++...+++.++.||||+. |++++.+++.+.+++++|||++.||..+
T Consensus 169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q 248 (591)
T COG1245 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248 (591)
T ss_pred HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH
Confidence 0012355667788888999999999999998 5888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccChhH-Hhhccc
Q 007057 449 GVALATSILQYLRDRVGLAVVTTHYADL-SCLKDK 482 (620)
Q Consensus 449 ~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~ 482 (620)
+...+. +++.|.+.+.+||+|.||+.+ .-++|.
T Consensus 249 Rl~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 249 RLNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred HHHHHH-HHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 999999 556677668899999999984 445553
No 412
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.62 E-value=1.9e-15 Score=145.27 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=123.1
Q ss_pred CCCeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh-------HHHHhh----------C
Q 007057 323 ENSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SLMSKA----------G 381 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli-------~~~a~~----------G 381 (620)
++..+++.++.+.|.. .++ ++|+.++.| ....++|.||||||||||++ |-- .++.+. |
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3568999999999953 233 999999999 89999999999999999999 211 111000 0
Q ss_pred c----------------cccCCCCCCccHHHHHHHHcCCc-------------hhhccccccchHHHH-HHHHHHHhcCC
Q 007057 382 L----------------YLPAKNHPRLPWFDLILADIGDH-------------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 382 ~----------------~vp~~~~~~l~~~d~i~~~ig~~-------------~~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
- -+|-.+ .++.- .++..+|-. -++.-.....|-||+ |+.+++.++.+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~--D~sae-~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQG--DISAE-HMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ceeEecccccccccccccccccc--cccHH-HHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 0 111111 11211 222222211 133456678899999 57777889999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
-.++||||.|-.||...+..|.+-+.+..-.+|+|++.+||..+ ++...++...+.+|++...
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 99999999999999999999999666666678999999999987 9999999999999988653
No 413
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=1.7e-15 Score=151.20 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=60.4
Q ss_pred hccccccchHHHHHHHHHHH-----hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEccChh-HHhh
Q 007057 408 LEQNLSTFSGHISRIVDILE-----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V-GLAVVTTHYAD-LSCL 479 (620)
Q Consensus 408 ~~~~~s~lSgg~krl~~i~~-----l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~-~~vli~TH~~~-l~~~ 479 (620)
....+.+||+||+|+..++. ++.+|+++|+||||+|+|+.....+...+.+ +.+. + .++|++||++. ...+
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhhccCCcc
Confidence 45678899999997554432 3689999999999999999999999985555 4444 4 47999999974 5566
Q ss_pred ccc--cceeeCc
Q 007057 480 KDK--DTRFENA 489 (620)
Q Consensus 480 ~~~--~~~~~~g 489 (620)
+++ +..+.+|
T Consensus 199 ~~~~~v~~l~~g 210 (213)
T cd03277 199 HEKMTVLCVYNG 210 (213)
T ss_pred cCceEEEEEecC
Confidence 653 4445554
No 414
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.60 E-value=6.3e-15 Score=143.00 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=60.7
Q ss_pred chHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeC
Q 007057 415 FSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (620)
Q Consensus 415 lSgg~k-rl~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~ 488 (620)
||+||+ ++.++++++ .+|+++|+|||++|+|+.....+...+ ..+.+.|.++|++||+.+....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L-~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI-KEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 999999 577777664 799999999999999999999999854 4455557899999999987778888777643
No 415
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=6.6e-15 Score=176.29 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=133.6
Q ss_pred CCCeEEEeeeeeecCC---c-cc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------hhCccccCCCCC
Q 007057 323 ENSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP 390 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~---~-~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~~G~~vp~~~~~ 390 (620)
++..++++|.+++.+. . +. ++||++++| +.++|+||-|||||+||.++ |-+.... ..-.|+||.+..
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3456889999999864 1 23 999999999 99999999999999999999 6655431 112488887521
Q ss_pred C---c------------cHHHHHHHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 391 R---L------------PWFDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 391 ~---l------------~~~d~i~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
. + ..+++++....+.. .+-.+--+|||||| |+++|++.-.+.+++|||-|.+.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 0 0 12445554444433 33456679999999 79999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|.+.+..|.+.++..+.+ ++|+|+|||..++...||.++.++||++...
T Consensus 674 VDahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 9999999999988854443 6899999998888899999999999998654
No 416
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.59 E-value=8.7e-15 Score=162.71 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=120.7
Q ss_pred CCeEEEeeeeeecCCccc---cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------HHhh-CccccCCCCCC
Q 007057 324 NSEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MSKA-GLYLPAKNHPR 391 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v---~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------~a~~-G~~vp~~~~~~ 391 (620)
+..+.++|++..-++..+ +.+|.+++| +.+.|+||||||||||+|+| ||=++ .+.. -.|+||.++..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence 467899999998865333 999999999 99999999999999999999 55433 1111 25777765311
Q ss_pred cc------------------HHHHHHHHcCCchhhcc------ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 392 LP------------------WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 392 l~------------------~~d~i~~~ig~~~~~~~------~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
.+ -+.+++..+|+.+.+++ =-..||+||+ |+++|+.++++|++++|||-|++||+
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 11 13356667776654332 2357999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
.....+...+.+.|- +.|+|-|+|-..+..+.++...+
T Consensus 549 ~~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 549 ETEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhheee
Confidence 999999986655432 67999999998887776654443
No 417
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.2e-14 Score=174.16 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=129.4
Q ss_pred CCeEEEeeeeeecCCc--cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~--~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
+|.|+++|++.+|... .| ++||+|.+| +.+||+|..|||||||+.++ .++.+ +..
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 4689999999999653 44 999999999 99999999999999999998 54432 222
Q ss_pred hCccccCCCC-------CCccHHH--------HHHHHc-----------CCchhhccccccchHHHHH-HHHHHHhcCCC
Q 007057 380 AGLYLPAKNH-------PRLPWFD--------LILADI-----------GDHQSLEQNLSTFSGHISR-IVDILELVSRE 432 (620)
Q Consensus 380 ~G~~vp~~~~-------~~l~~~d--------~i~~~i-----------g~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~ 432 (620)
.-..+||++. ..+.+++ +.++.. |++..+..+-+.||.|||| ++++++++.++
T Consensus 1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 3347888861 1222222 123322 3344455667889999998 89999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++++|||.|++.|+..-.-|-+.|.+.++ ++|||.+-|.+.-.--+|++.++++|++...
T Consensus 1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 99999999999999876666665555554 6899999999987777999999999998543
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=8e-15 Score=172.01 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=130.0
Q ss_pred CeEEEeeeeeec----CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hh-----hH-------------HHHh
Q 007057 325 SEMTVGSLSKGI----SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-----AS-------------LMSK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y----~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gl-----i~-------------~~a~ 379 (620)
.+..-.|+++.- +.+.+ +|+=-+.+| ...+|+|++||||||||+++ |- +. -.++
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcc
Confidence 344455665544 23333 888889999 89999999999999999999 22 10 0122
Q ss_pred hCccccCCC--CCC------------------------ccHHHHHHHHcCCchhhcccccc----chHHHH-HHHHHHHh
Q 007057 380 AGLYLPAKN--HPR------------------------LPWFDLILADIGDHQSLEQNLST----FSGHIS-RIVDILEL 428 (620)
Q Consensus 380 ~G~~vp~~~--~~~------------------------l~~~d~i~~~ig~~~~~~~~~s~----lSgg~k-rl~~i~~l 428 (620)
.-+||-|.. .+. ..++++++..+++.+..+.-+.. ||.+|| |+.++..+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE
Confidence 223443332 001 12577888888888766655555 999999 57777889
Q ss_pred cCCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeC-ceEEEec------Ccc
Q 007057 429 VSRE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFSL------ETL 498 (620)
Q Consensus 429 ~~~~-~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~-g~~~~~~------~~l 498 (620)
+.+| .||+|||||+|||..+...+.+ +++.+.+.|.|||+|-|.+. +-+..|+...++. |++++.. .++
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 9999 8999999999999999999998 77889999999999999986 5577788777754 5666643 233
Q ss_pred ccchhhccCCC
Q 007057 499 RPTYRILWGST 509 (620)
Q Consensus 499 ~~~y~l~~g~~ 509 (620)
..+|.-..|..
T Consensus 1024 i~YFes~~~~~ 1034 (1391)
T KOG0065|consen 1024 IEYFESIGGVK 1034 (1391)
T ss_pred HHHHHhcCCcc
Confidence 44555544443
No 419
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.3e-14 Score=149.58 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=122.2
Q ss_pred CCeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hh-------hH------------HHHhh
Q 007057 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-------AS------------LMSKA 380 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gl-------i~------------~~a~~ 380 (620)
.+.+.+.+|++.|.. +++ +++|+++.| +.++|+||+|+||||+++.+ -. +. .+.++
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 356789999999965 444 999999999 99999999999999999999 22 21 13444
Q ss_pred CccccCCCCCCcc--HH------------HHH---------HHHcC-Cchhhcc----ccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHPRLP--WF------------DLI---------LADIG-DHQSLEQ----NLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~~l~--~~------------d~i---------~~~ig-~~~~~~~----~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.+.|||+. +-+. .+ +.+ ...+. ..+-.+. .--.+||||| |++.++.++.+
T Consensus 339 Ig~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 339 IGIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred hCcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 55788874 2111 00 000 00000 1111222 2236899999 58888999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|++++|||.|+.||...-.+|..++-+ +. .|.|.+++-|.+.-.--||.++++++|.+...
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~-~~-~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALRE-VS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHH-Hh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 999999999999999999988875544 33 47899999999887777899999999998754
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.51 E-value=4.6e-14 Score=147.79 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=110.0
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCC-----------------Cc---cHHHHH--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHP-----------------RL---PWFDLI-- 398 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~-----------------~l---~~~d~i-- 398 (620)
++|+++.+| ++++|+|++|+||||+|+++ |....... -.|.|.+|.. .+ .+.+++
T Consensus 401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~e-e~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGE-EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhcccc-cccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence 999999999 99999999999999999999 44322110 1244554421 11 233443
Q ss_pred -----------HHHcCCch--hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007057 399 -----------LADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464 (620)
Q Consensus 399 -----------~~~ig~~~--~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~ 464 (620)
+.+.|+.| ....+.+.||.||+ |..++..++.+|++++.||..++||+.+...++..+-+...+.|
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 44444444 23578899999999 78888999999999999999999999999999997777555678
Q ss_pred cEEEEEccChhHH-hh-ccccceeeCce
Q 007057 465 GLAVVTTHYADLS-CL-KDKDTRFENAA 490 (620)
Q Consensus 465 ~~vli~TH~~~l~-~~-~~~~~~~~~g~ 490 (620)
.|++++||..++. .+ -|..+.+.-|.
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg~ 586 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYGK 586 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeeccc
Confidence 9999999999965 55 45555554444
No 421
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.7e-13 Score=149.75 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=116.0
Q ss_pred ccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhhCccccCCCC-----CCccH
Q 007057 341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGLYLPAKNH-----PRLPW 394 (620)
Q Consensus 341 v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~G~~vp~~~~-----~~l~~ 394 (620)
-++||++.+| ++++|.|-=|+|+|-+++++ |.-.. +.+-..|+|.+.. ...++
T Consensus 276 ~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 276 RDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 3899999999 99999999999999999999 64321 1111235554321 11122
Q ss_pred HHHH--------------------------HHHcCC-chhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 395 FDLI--------------------------LADIGD-HQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 395 ~d~i--------------------------~~~ig~-~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
.+++ ..+++. ..+.+.++++||||-+| +.+++.++.+|++|||||||+|.|.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 2221 222222 13567899999999885 8888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
-.+..+.. ++..+.+.|.+||++|-+++ +..+||++.+|.+|.+.-
T Consensus 435 GAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 435 GAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred chHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999 77778988999888888765 789999999999998864
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.50 E-value=6e-13 Score=142.94 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=110.8
Q ss_pred eEEEeeeeeecCC--ccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------HHhhCccccCCCCCCcc
Q 007057 326 EMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------MSKAGLYLPAKNHPRLP 393 (620)
Q Consensus 326 ~l~~~~l~~~y~~--~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------~a~~G~~vp~~~~~~l~ 393 (620)
.|.++||..--.. ..| ..+|.+++| --+.|+||||||||+|+|++ ||-++ ..+.-+|+||.++...+
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcC
Confidence 3567777665532 233 899999999 89999999999999999999 55443 22334678887643222
Q ss_pred H-----------------------HHHHHHHcCCc---------hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 007057 394 W-----------------------FDLILADIGDH---------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (620)
Q Consensus 394 ~-----------------------~d~i~~~ig~~---------~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEp 440 (620)
- ...|+..+.++ +.+..=-..||||++ |+..++.+-++|...+|||-
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 1 11222222222 222222347899999 58888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
|+...+.....+.++...+ |.+.|-+||.+.+-.+-.+...+
T Consensus 640 TsAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hcccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHHhc
Confidence 9999998888888765544 88999999999887765555444
No 423
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=146.34 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=115.4
Q ss_pred CeEEEeeeeeecCC-ccc---cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------H----hhCccccCCC
Q 007057 325 SEMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----KAGLYLPAKN 388 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v---~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------a----~~G~~vp~~~ 388 (620)
..+++++|+.+=.+ ..+ ++|+.|+.| +-+.|+||||||||.|||.+ ||=+.. . +--+|+||.+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 57889999887754 333 799999999 89999999999999999999 454321 1 1135889887
Q ss_pred CCCccH-----------------------HH---------HHHHHcCCch--hhccccccchHHHH-HHHHHHHhcCCCc
Q 007057 389 HPRLPW-----------------------FD---------LILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 389 ~~~l~~-----------------------~d---------~i~~~ig~~~--~~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
+..++- +. ++.++.|--| ....=..+||+||+ |+++|+.+.++|.
T Consensus 511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk 590 (659)
T KOG0060|consen 511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK 590 (659)
T ss_pred CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence 422210 11 2333443222 33344578999998 6999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
+.||||-|+.+|...-.++.. .+.+.|.|.|-|+|...+..+=+....+.
T Consensus 591 ~AiLDE~TSAv~~dvE~~~Yr----~~r~~giT~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 591 FAILDECTSAVTEDVEGALYR----KCREMGITFISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred eEEeechhhhccHHHHHHHHH----HHHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence 999999999999887776666 34445899999999998887666555553
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.6e-13 Score=138.94 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=61.1
Q ss_pred ccchHHHHH-HHHHHHh--cC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 413 STFSGHISR-IVDILEL--VS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 413 s~lSgg~kr-l~~i~~l--~~--~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
.+||+||++ ++++++. +. +|+++|+|||++|+|+.....+...+.+ +.+ +.++|++||++.+..+|++.+.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 359999994 6766543 33 9999999999999999999999995544 444 679999999999888999888776
Q ss_pred Cc
Q 007057 488 NA 489 (620)
Q Consensus 488 ~g 489 (620)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 64
No 425
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.42 E-value=9.7e-13 Score=129.33 Aligned_cols=169 Identities=28% Similarity=0.319 Sum_probs=130.8
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~--~l-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||++++++|++.|.+|.++|++|++.|+++.. .+ .....++++++|+++++.++..|+. ++.++..+..++..+..
T Consensus 33 ~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~ 111 (204)
T PF05192_consen 33 MGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRA-SPQDLLKLYKTLRSIIE 111 (204)
T ss_dssp HHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999986 22 2446678999999999999998875 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVA 157 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~ 157 (620)
+++++..... ..+.+..+...+++++.+.+.|.++||++.. ..+..+.
T Consensus 112 i~~~~~~~~~-------~~~~L~~l~~~l~~~~~l~~~i~~~id~~~~-~~~~~~~------------------------ 159 (204)
T PF05192_consen 112 IKKLLSERLE-------SSPLLRKLLSSLPDFSELLDEIESTIDEDKS-LAIREQD------------------------ 159 (204)
T ss_dssp HHHHHHCTSS-------STHHHHHHHHHHCSHHHHHHHHHHHBHTS-C-CHCTTSS------------------------
T ss_pred HHHHHHhhcc-------cHHHHHHHHHhcccHHHHHHHHHHHHhcCcH-HHHhccc------------------------
Confidence 9988653211 1245666777676777888888888876411 0000000
Q ss_pred HHHHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHH
Q 007057 158 AQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237 (620)
Q Consensus 158 ~~~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~il~~L 237 (620)
.| +. +..++.+|+.+|
T Consensus 160 ------------~I--~~--------------------------------------------------~~~~~~~i~~~L 175 (204)
T PF05192_consen 160 ------------II--RD--------------------------------------------------INDEEQRILREL 175 (204)
T ss_dssp ------------SB--ST--------------------------------------------------HHHHHHHHHHHH
T ss_pred ------------HH--HH--------------------------------------------------HHHHHHHHHHHH
Confidence 00 00 567888999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007057 238 TAEIAKSEREIKYLMDRVLEIDLAFARAG 266 (620)
Q Consensus 238 ~~~i~~~~~~l~~~~~~~~~lD~~~a~a~ 266 (620)
+..|.++.+.+..+++.+++|||++|+|+
T Consensus 176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 176 TNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985
No 426
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=3e-12 Score=143.99 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=69.3
Q ss_pred hhccccccchHHHH-HHHHHHHh---cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 407 SLEQNLSTFSGHIS-RIVDILEL---VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 407 ~~~~~~s~lSgg~k-rl~~i~~l---~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.+-++..||||||. |+.++..+ .+...|+||||||.||-+.+...|.. ++..|.+.|.|||++.|++++...||.
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHNLdVIk~AD~ 893 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHNLDVIKTADW 893 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecccceEeecCE
Confidence 35688999999998 58888665 45559999999999999999999999 788899999999999999999999998
Q ss_pred ccee
Q 007057 483 DTRF 486 (620)
Q Consensus 483 ~~~~ 486 (620)
++.+
T Consensus 894 IIDL 897 (935)
T COG0178 894 IIDL 897 (935)
T ss_pred EEEc
Confidence 7765
No 427
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.38 E-value=3e-12 Score=157.59 Aligned_cols=89 Identities=27% Similarity=0.151 Sum_probs=74.2
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~---~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+.++|+.- .+.++..||||||. |+.++..+..+ +.|+||||||+||++.+...|.. +++.|.+.|.|||++.||
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence 34445442 45789999999999 58888777644 78999999999999999999999 677799999999999999
Q ss_pred hhHHhhccccceeeC
Q 007057 474 ADLSCLKDKDTRFEN 488 (620)
Q Consensus 474 ~~l~~~~~~~~~~~~ 488 (620)
+++...||.++.+..
T Consensus 1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHHhCCEEEEcCC
Confidence 998888998887644
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=1.7e-12 Score=125.32 Aligned_cols=147 Identities=14% Similarity=0.241 Sum_probs=110.1
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH---------------------------HHHhhCccccCCCCCCcc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRLP 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~---------------------------~~a~~G~~vp~~~~~~l~ 393 (620)
.+|+++..| ++-+++|.+|||||-.-|.| |... +.++..+.+++++..-+.
T Consensus 25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 899999999 99999999999999999999 5542 012222333333311111
Q ss_pred ---------------------HH----------HHHHHHcCCch---hhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 394 ---------------------WF----------DLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 394 ---------------------~~----------d~i~~~ig~~~---~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
++ -.++.++|..| -...++..+.-|+- ++.++.+++..|.|+|.|
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence 00 02456777653 45677888888887 488889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChh-HHhhccccceeeCce
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~-l~~~~~~~~~~~~g~ 490 (620)
|||+.++|.....+.. ++..+.+. +.++++++||+. +...||++.++--|.
T Consensus 184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 9999999999999999 66667654 668899999987 779999987765553
No 429
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=3.1e-11 Score=124.90 Aligned_cols=76 Identities=24% Similarity=0.200 Sum_probs=53.9
Q ss_pred ccccchHHHHH-HHHHHHh---------cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh-hHHhh
Q 007057 411 NLSTFSGHISR-IVDILEL---------VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCL 479 (620)
Q Consensus 411 ~~s~lSgg~kr-l~~i~~l---------~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~-~l~~~ 479 (620)
..+.+|+||++ +.+++++ ..+|+++|||||+++||+.....+...+.+ .+ .++++||+. .+..+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~----~~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG----RV-QTFVTTTDLADFDAL 254 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc----CC-CEEEEeCCchhccch
Confidence 35567999995 6666665 379999999999999999999988774433 23 355555554 46666
Q ss_pred c---cccceeeCceE
Q 007057 480 K---DKDTRFENAAT 491 (620)
Q Consensus 480 ~---~~~~~~~~g~~ 491 (620)
| .+++.+.+|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 45566666654
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.20 E-value=4.2e-11 Score=126.20 Aligned_cols=138 Identities=22% Similarity=0.318 Sum_probs=106.4
Q ss_pred cccceecCC----ceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc------------------------
Q 007057 342 PIDIKVECE----TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP------------------------ 393 (620)
Q Consensus 342 ~vsl~i~~g----~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~------------------------ 393 (620)
+..+.|..| .++++.+|.||.|||||++++ +|...|.++ ..+|
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~ml--------ag~~~pd~~-~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRML--------AGRLKPDEG-GEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHH--------hcCCCCCcc-CcccccceeccccccCccccchHHHHHH
Confidence 555555544 479999999999999999999 554444443 1111
Q ss_pred -----------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q 007057 394 -----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (620)
Q Consensus 394 -----------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~ 461 (620)
+..+++.-+..++.+++.+.+||||+. |+++++.+-..++++++|||.+-||.+.+......+.+++.
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfil 504 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFIL 504 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 122344455567788999999999998 58888889999999999999999999999888887777776
Q ss_pred cCCcEEEEEccChhHH-hhccccceeeC
Q 007057 462 DRVGLAVVTTHYADLS-CLKDKDTRFEN 488 (620)
Q Consensus 462 ~~~~~vli~TH~~~l~-~~~~~~~~~~~ 488 (620)
..+.|-.+|.||.-.+ -++|+++.+..
T Consensus 505 hakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 505 HAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred hccchhhhhhhHHHHHHhhcceeEEEec
Confidence 7778999999998866 46888776643
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.18 E-value=2.1e-10 Score=114.65 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=49.5
Q ss_pred cchHHHHH-HHHHH--H--hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 414 TFSGHISR-IVDIL--E--LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 414 ~lSgg~kr-l~~i~--~--l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
.+||||+. +++++ + ...+.+++|||||.++||+.....+... +..+.+ ..-+|++||+..+...++..+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~-l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADL-LKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHH-HHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccc-ccccccccccccccccccccccc
Confidence 99999994 44443 3 3567789999999999999999999984 444443 36799999999988888876654
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=7.9e-11 Score=139.08 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=81.2
Q ss_pred HHHcCCchh-hccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 399 ~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~--~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+|+... +++.+++|||||+ |+.++++++.+| .++||||||+||||.+...|.. ++..+.+.|.|||+|||++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 455677644 6899999999999 588888888875 8999999999999999999999 5666787889999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 007057 475 DLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 475 ~l~~~~~~~~~~------~~g~~~~~ 494 (620)
++...||+++.+ .+|.+.+.
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeec
Confidence 966799999999 77887664
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.14 E-value=3.8e-10 Score=121.69 Aligned_cols=169 Identities=19% Similarity=0.248 Sum_probs=129.7
Q ss_pred CCCeEEEeeeeeecCC--ccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HH
Q 007057 323 ENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MS 378 (620)
Q Consensus 323 g~~~l~~~~l~~~y~~--~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a 378 (620)
|..++++++++..-.. ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-.+ +.
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 5678899999887643 234 999999999 99999999999999999999 76532 01
Q ss_pred hhC-ccccCCCC-----CCccHHHH----------------------------HHHHcCCc-hhhccccccchHHHHH-H
Q 007057 379 KAG-LYLPAKNH-----PRLPWFDL----------------------------ILADIGDH-QSLEQNLSTFSGHISR-I 422 (620)
Q Consensus 379 ~~G-~~vp~~~~-----~~l~~~d~----------------------------i~~~ig~~-~~~~~~~s~lSgg~kr-l 422 (620)
..| .|+|.+.. ..++..++ +...++.. .+...+..+||||.+| +
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 112 35665431 12233332 22333332 3456778999999885 7
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEE
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~ 493 (620)
.+++.+..+|+|||+..||.|||....+.+...+++ ..+.|+.|+++|-|++ +..+||++.++.+|.+.-
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 788999999999999999999999999999997776 6777899999999987 779999999999998753
No 434
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.14 E-value=1.1e-10 Score=138.07 Aligned_cols=95 Identities=24% Similarity=0.204 Sum_probs=81.6
Q ss_pred HHHcCCchh-hccccccchHHHHH-HHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 399 LADIGDHQS-LEQNLSTFSGHISR-IVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 399 ~~~ig~~~~-~~~~~s~lSgg~kr-l~~i~~l~~~~--~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+|+... +++++.+|||||+| +.++.+++.+| .++||||||+||||.+...|.. ++..+.+.|.|||+|||++
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 556677654 78999999999994 88888888886 8999999999999999999999 5666788889999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 007057 475 DLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 475 ~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+....||++..+ .+|++.+.
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeec
Confidence 866679999999 77787664
No 435
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.09 E-value=6.3e-10 Score=106.25 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=59.2
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 410 ~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
..+..-|-|+-=+.++..-.++.-++|||||-++|.|.-+..+.. ++..+.+.|+-+||+||.+-+..+
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred cchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhheeC
Confidence 346667888888888888889999999999999999999999887 888899999999999999865443
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.07 E-value=3.3e-10 Score=109.37 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHHhhCc----cccCC----C-CCCccH---H---HHHHHHcCC--chhhcccccc
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGL----YLPAK----N-HPRLPW---F---DLILADIGD--HQSLEQNLST 414 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~----~vp~~----~-~~~l~~---~---d~i~~~ig~--~~~~~~~~s~ 414 (620)
.++|+|+||+|||||++.+ +.+. ..|. ++.+. + ...+.. . ...+...+. .....+....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---EEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEe
Confidence 4789999999999999998 3221 1121 11110 0 000000 0 011122221 2223455677
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceE
Q 007057 415 FSGHIS-RIVDILELVSRESLVLIDEIG--SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (620)
Q Consensus 415 lSgg~k-rl~~i~~l~~~~~LlLLDEpt--~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~ 491 (620)
+|++++ ....+...+.+|+++++|||+ .++|+.....+.. +.+.+.++|+|+|+..+..+++++..+.++.+
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 888888 466566677899999999954 4555554444443 22448899999999777788998888888766
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.99 E-value=2.3e-09 Score=110.63 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC-----CccHHH---HHHHHc-CCch-hhccccccchHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADI-GDHQ-SLEQNLSTFSGHISR 421 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~-----~l~~~d---~i~~~i-g~~~-~~~~~~s~lSgg~kr 421 (620)
..++|+||||||||||++.+ +|...|..|.. .+..++ ++...+ +..+ .+....+.+-+-.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 46899999999999999999 77777765421 222222 222111 1111 111222223222221
Q ss_pred -HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 422 -IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 422 -l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
-...+..+.+|+++|+|||++. ....++++.+. .|.++|+|||+..+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 1122334479999999999742 22333555444 58899999998766444
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.88 E-value=9.9e-09 Score=103.76 Aligned_cols=135 Identities=13% Similarity=0.229 Sum_probs=75.6
Q ss_pred EEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHH-HHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcCCc
Q 007057 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405 (620)
Q Consensus 328 ~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTl-Lk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~ 405 (620)
.++++++.+++ -+++| ++++|+||||+||||+ ++.+ +++. ....+.|+..+. ..-.+..++ ..+|..
T Consensus 9 ~~~~ld~~l~g-------gi~~g-~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~-~~~~~~~~~-~~~g~~ 77 (230)
T PRK08533 9 SRDELHKRLGG-------GIPAG-SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQL-TTTEFIKQM-MSLGYD 77 (230)
T ss_pred EEeeeehhhCC-------CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCC-CHHHHHHHH-HHhCCc
Confidence 45566665544 26788 8999999999999999 4555 3322 112234444333 122223322 334431
Q ss_pred --hhhcc------c-cccchHHHH---HHHHHHHh--cCCCcEEEEcCCCCCC----CHHHHHHHHHHHHHHHhcCCcEE
Q 007057 406 --QSLEQ------N-LSTFSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLA 467 (620)
Q Consensus 406 --~~~~~------~-~s~lSgg~k---rl~~i~~l--~~~~~LlLLDEpt~gl----D~~~~~~l~~all~~l~~~~~~v 467 (620)
+.... . ...+|++.. .+..++.. ..+|+++++|||++++ |+.....+.. +++.+.+.|.|+
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~tv 156 (230)
T PRK08533 78 INKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKVI 156 (230)
T ss_pred hHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCEE
Confidence 11110 0 012344432 22222222 3579999999999999 7777777766 666676667755
Q ss_pred EEEccChh
Q 007057 468 VVTTHYAD 475 (620)
Q Consensus 468 li~TH~~~ 475 (620)
++ ||+..
T Consensus 157 i~-t~~~~ 163 (230)
T PRK08533 157 IL-TANPK 163 (230)
T ss_pred EE-Eeccc
Confidence 55 55543
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.87 E-value=8.6e-09 Score=99.92 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=76.3
Q ss_pred EEEEcCCCCcHhHHHHHHhhhHHH-HhhCccccCCCCCCccHHHHHHHHcC----------CchhhccccccchHHHHH-
Q 007057 354 VVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIG----------DHQSLEQNLSTFSGHISR- 421 (620)
Q Consensus 354 ~~I~GpNGsGKSTlLk~iGli~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig----------~~~~~~~~~s~lSgg~kr- 421 (620)
++|.||.|+|||||.-.+..-... .....|+..+. ...-+.+.+..+| .....+..+..+|+|+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 689999999999998887322211 11223443332 1111112222223 333456677788988875
Q ss_pred ----HHHHHH--hcCCCcEEEEcCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 422 ----IVDILE--LVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 422 ----l~~i~~--l~~~~~LlLLDEpt~glD---~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
+..+.. ...+|+++++|||+..+| +.....+.. ++..+++.|.|+|+++|+..
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEecccc
Confidence 233322 356899999999999999 666666665 66777777899999999865
No 440
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.83 E-value=7.2e-09 Score=103.01 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=46.3
Q ss_pred ccccchHHHHHH-HHHHHhc--CCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH
Q 007057 411 NLSTFSGHISRI-VDILELV--SRE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (620)
Q Consensus 411 ~~s~lSgg~krl-~~i~~l~--~~~-~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l 476 (620)
+.+.+|.|++++ .++..+. ... .++++|||-+||.|.....+.. ++..+.+.+.-+|+|||.+.+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence 456679999985 5444433 333 9999999999999999999997 445555556789999999764
No 441
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.76 E-value=3.7e-08 Score=112.26 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=82.9
Q ss_pred ccchHHHH-HHHHHHHhcCC----CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 413 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 413 s~lSgg~k-rl~~i~~l~~~----~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
..+||||+ ++.++++++.. |+++|||||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 58999999 68888877654 69999999999999999999999 5555664 789999999999888999998887
Q ss_pred CceEEEecCccccchhhccCCCCCchHHHHHHHcC---CCHHHHHHHHHHH
Q 007057 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV 535 (620)
Q Consensus 488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---~~~~v~~~a~~~~ 535 (620)
++.. +..+..... ...+..--.++|+++| +.+..++.|++.+
T Consensus 517 k~~~--~~~t~s~i~----~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGRTATRVR----PLSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCcEEEEEE----ECCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6532 111111111 1223344567899884 3455566666654
No 442
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.72 E-value=3.7e-08 Score=104.37 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=65.7
Q ss_pred HHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHh
Q 007057 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~ 478 (620)
..+.+...+++.+..+|||+- +.+++++.+...++.++|||.+-||...+...+. .++.+..-..-+|+|.||+.+..
T Consensus 199 ~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~YiIVVEHDLsVLD 277 (592)
T KOG0063|consen 199 DQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRYIIVVEHDLSVLD 277 (592)
T ss_pred HHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCeEEEEEeechHHH
Confidence 334455667889999999998 5888888999999999999999999999999888 55667766788999999998654
Q ss_pred h
Q 007057 479 L 479 (620)
Q Consensus 479 ~ 479 (620)
+
T Consensus 278 y 278 (592)
T KOG0063|consen 278 Y 278 (592)
T ss_pred h
Confidence 3
No 443
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=3.9e-08 Score=116.69 Aligned_cols=152 Identities=21% Similarity=0.230 Sum_probs=113.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh-hC------------------ccccCCCCCCc---------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-AG------------------LYLPAKNHPRL--------- 392 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~-~G------------------~~vp~~~~~~l--------- 392 (620)
|++.-+++| +++.+.||.|||||||||.+ |-..-+.+ .| .|.++.. ..+
T Consensus 133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~D-vH~p~lTVreTl 210 (1391)
T KOG0065|consen 133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQD-VHFPELTVRETL 210 (1391)
T ss_pred CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccc-cccceeEEeehh
Confidence 899999999 99999999999999999999 33221100 11 1222221 111
Q ss_pred -------------c----------HHHHHHHHcCCchhhcc-----ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 393 -------------P----------WFDLILADIGDHQSLEQ-----NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 393 -------------~----------~~d~i~~~ig~~~~~~~-----~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
+ ..|.++..+|+....+. -..-.||||| |+..+-.++.+++++.+||+|+|
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 0 23456777887755443 4456899999 68888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChh--HHhhccccceeeCceEEEec
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~--l~~~~~~~~~~~~g~~~~~~ 495 (620)
||......+..++...-+..+.|++++-|... .-.+.|.+..+.+|.+++..
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 99999999999766655555778888888764 55788999999999998864
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=98.68 E-value=1e-07 Score=108.09 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=82.0
Q ss_pred cchHHHH-HHHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeC
Q 007057 414 TFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (620)
Q Consensus 414 ~lSgg~k-rl~~i~~l~~----~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~ 488 (620)
.+||||+ |+++++.++. +|+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 7899999 6888887664 689999999999999999999999 5555654 5899999999998899999888765
Q ss_pred ceEEEecCccccchhhccCCCCCchHHHHHHHcC---CCHHHHHHHHHHH
Q 007057 489 AATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV 535 (620)
Q Consensus 489 g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---~~~~v~~~a~~~~ 535 (620)
+.. ...+.... .-..+..-..++|+++| +.+..+..|++.+
T Consensus 508 ~~~--~~~t~s~i----~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ETD--GGMTETHM----QPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred ccc--CCeeeEEE----EECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 431 11111111 11223344567899884 2456666776654
No 445
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=4.1e-08 Score=119.54 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=68.2
Q ss_pred chhhccccccchHHHH-HHHHHHHhcC----------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 405 HQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 405 ~~~~~~~~s~lSgg~k-rl~~i~~l~~----------~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.....+++.+|||||+ +++++++++. +|+++||||||+|||+.....+.. ++..+...|.+|+|+||+
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCc
Confidence 3455678999999999 6777777653 799999999999999999999999 556677778899999999
Q ss_pred hhHH-hhccccceeeC
Q 007057 474 ADLS-CLKDKDTRFEN 488 (620)
Q Consensus 474 ~~l~-~~~~~~~~~~~ 488 (620)
.++. .+++++.++..
T Consensus 1020 ~~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1020 PEFRERIPHRILVKKT 1035 (1042)
T ss_pred HHHHHhhCCEEEEEEC
Confidence 9855 67887777643
No 446
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.67 E-value=2.6e-07 Score=101.42 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=93.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCc-----cHHHHHHH-HcCCchhhcc-----
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PWFDLILA-DIGDHQSLEQ----- 410 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l-----~~~d~i~~-~ig~~~~~~~----- 410 (620)
++ +.+.+| ++++|+|+||+|||||++++ +|...|..+...+ .-+.++.. .++.. .+.+
T Consensus 151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence 56 999999 99999999999999999999 5554444331000 00112221 22221 1222
Q ss_pred ccccchHHHH-HHHHH---HH--h--cCCCcEEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHHhc-
Q 007057 411 NLSTFSGHIS-RIVDI---LE--L--VSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD- 462 (620)
Q Consensus 411 ~~s~lSgg~k-rl~~i---~~--l--~~~~~LlLLD-----------------Ep--t~glD~~~~~~l~~all~~l~~- 462 (620)
..+.=|.+++ +...+ .+ + ....=|+++| || ++|+||.....+.. +++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence 2234455666 32211 11 1 2445588889 75 78999999998888 6777763
Q ss_pred -CCc-----EEEEEccChhHHhhccccceeeCceEEEec
Q 007057 463 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 463 -~~~-----~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
.|. ||++.|||++ ..+|+++..+.+|++..+.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence 453 8999999988 4889999999999998874
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.66 E-value=9.4e-08 Score=89.45 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHH--HHHcCCchh---hccccccchHHH-HHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQS---LEQNLSTFSGHI-SRIVDI 425 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i--~~~ig~~~~---~~~~~s~lSgg~-krl~~i 425 (620)
+++|+||||+||||+++.+ +..........|+..+. ......... +...+..+. ........+.+. .+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE-EIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc-chHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999999 32222111112333322 111111111 111111111 111111222322 245556
Q ss_pred HHhcCCCcEEEEcCCCCCC----------CHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 426 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~gl----------D~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
.....++.++++|||++-+ +......+.. +...+.+.+.++|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE-LLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhcCCceEEEEEecCC
Confidence 6678899999999999544 4443444444 67777667889999999875
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.57 E-value=4e-07 Score=92.12 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHH-HHhhCccccCCCCCCccHHHHHHHHcCCc--hhhc-----------ccc
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLE-----------QNL 412 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~~~-----------~~~ 412 (620)
+++| .++.|+||+|+|||||..++..-.+ ....+.|+-.+. ..-.+..+ +..+|.. +.+. ...
T Consensus 22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence 4567 8999999999999999999832211 123344555443 11122222 2333321 1111 112
Q ss_pred ccchHHHHH-HHHHHHhcC--CCcEEEEcCCCCCC---CHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 413 STFSGHISR-IVDILELVS--RESLVLIDEIGSGT---DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 413 s~lSgg~kr-l~~i~~l~~--~~~LlLLDEpt~gl---D~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
+..+.++.+ +..+...+. +|+++++|||+..+ |+.....+.. .+..+.+.++|+++++|...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence 233455554 444555443 89999999999654 4444344444 34445667889999999764
No 449
>PRK03918 chromosome segregation protein; Provisional
Probab=98.56 E-value=1.3e-07 Score=113.37 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=64.3
Q ss_pred ccccccchHHHHH-HHHH------HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 409 EQNLSTFSGHISR-IVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 409 ~~~~s~lSgg~kr-l~~i------~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
..++.+|||||++ ++++ ++++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++...|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence 5678899999995 4443 346789999999999999999999999995544 5555679999999999888899
Q ss_pred ccceee
Q 007057 482 KDTRFE 487 (620)
Q Consensus 482 ~~~~~~ 487 (620)
+++.+.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 888775
No 450
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.55 E-value=1.2e-07 Score=107.88 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=68.2
Q ss_pred HHHHHHcCCchhhccccccchHHHH-HHHHHHHhc----------CCCcEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcC
Q 007057 396 DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRDR 463 (620)
Q Consensus 396 d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~----------~~~~LlLLDEpt-~glD~~~~~~l~~all~~l~~~ 463 (620)
+......|.. ...+.+|||||+ +++++++++ .+|+++|||||| +++|+.....+.. ++..+ .
T Consensus 453 ~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~ 526 (562)
T PHA02562 453 NETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--K 526 (562)
T ss_pred hhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--C
Confidence 3444444543 347899999999 577777665 589999999998 7899999999988 55555 4
Q ss_pred CcEEEEEccChhHHhhccccceeeC
Q 007057 464 VGLAVVTTHYADLSCLKDKDTRFEN 488 (620)
Q Consensus 464 ~~~vli~TH~~~l~~~~~~~~~~~~ 488 (620)
+.++|++||+.++...+++++.+.+
T Consensus 527 ~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 527 DTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCeEEEEECchhchhhhhcEEEEEE
Confidence 7899999999887788888887764
No 451
>PRK01156 chromosome segregation protein; Provisional
Probab=98.49 E-value=3e-07 Score=110.50 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred ccccccchHHHH-HHHHH------HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC--cEEEEEccChhHHhh
Q 007057 409 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCL 479 (620)
Q Consensus 409 ~~~~s~lSgg~k-rl~~i------~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~--~~vli~TH~~~l~~~ 479 (620)
..++..||||++ +++++ ++++.+|++++|||||+|||+.....+...+...+...+ .++|++||++++...
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 357889999999 46543 557889999999999999999999999885544455443 379999999998889
Q ss_pred ccccceee
Q 007057 480 KDKDTRFE 487 (620)
Q Consensus 480 ~~~~~~~~ 487 (620)
|++++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99988775
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=1.8e-07 Score=102.01 Aligned_cols=149 Identities=10% Similarity=0.046 Sum_probs=87.5
Q ss_pred EeeeeeecCC--ccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCC------CCCccH---HHH
Q 007057 329 VGSLSKGISD--FPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN------HPRLPW---FDL 397 (620)
Q Consensus 329 ~~~l~~~y~~--~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~------~~~l~~---~d~ 397 (620)
.+.++..|.. +.++..+.+.+| +.++|+|+||+|||||++++ ++...|..+ .....+ +.+
T Consensus 133 r~~i~~~l~TGiraID~ll~I~~G-qri~I~G~sG~GKTtLl~~I--------a~~~~~~~gvI~~iGerg~ev~e~~~~ 203 (432)
T PRK06793 133 REEITDVFETGIKSIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMI--------AKNAKADINVISLVGERGREVKDFIRK 203 (432)
T ss_pred eechhhccCCCCEEEeccceecCC-cEEEEECCCCCChHHHHHHH--------hccCCCCeEEEEeCCCCcccHHHHHHH
Confidence 3344444532 334667999999 99999999999999999999 443333221 001111 222
Q ss_pred HHHHcCCch-hhccccccchHHHH-HHHHHHHhc-------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007057 398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 468 (620)
Q Consensus 398 i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~-------~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vl 468 (620)
.+..-|+.. -+-...+.-|.+++ +...+...+ .++-|+++|+||++.|+. ..+.. .+...-..|-+..
T Consensus 204 ~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~ 280 (432)
T PRK06793 204 ELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLL 280 (432)
T ss_pred HhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeee
Confidence 222222221 12345678889998 444443322 688899999999999996 33333 2333333355677
Q ss_pred EEccChhHHhhccccceeeCceEE
Q 007057 469 VTTHYADLSCLKDKDTRFENAATE 492 (620)
Q Consensus 469 i~TH~~~l~~~~~~~~~~~~g~~~ 492 (620)
+.||...+.+-+. ....|++.
T Consensus 281 ~~s~l~~L~ERag---~~~~GSiT 301 (432)
T PRK06793 281 MESYMKKLLERSG---KTQKGSIT 301 (432)
T ss_pred eeccchhHHHHhc---cCCCcceE
Confidence 7788544443332 23566653
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.44 E-value=1.5e-07 Score=99.33 Aligned_cols=129 Identities=9% Similarity=0.074 Sum_probs=71.1
Q ss_pred ccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHH-cCCchhhc---cccccchHH
Q 007057 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD-IGDHQSLE---QNLSTFSGH 418 (620)
Q Consensus 343 vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~-ig~~~~~~---~~~s~lSgg 418 (620)
+++.+..| ..++|+||+||||||||+++ ++.+.|..+ +-.++...+. +.....+. .....-.++
T Consensus 137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~---iv~ied~~El~~~~~~~~~l~~~~~~~~~~~ 204 (308)
T TIGR02788 137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDER---IITIEDTREIFLPHPNYVHLFYSKGGQGLAK 204 (308)
T ss_pred HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCcccc---EEEEcCccccCCCCCCEEEEEecCCCCCcCc
Confidence 44667778 89999999999999999999 665433332 1111111110 00000000 000000111
Q ss_pred HH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceE
Q 007057 419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (620)
Q Consensus 419 ~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~ 491 (620)
.. .-.+..++..+|+++++|||.. ..... +++.+.....+++.|+|..+.....++...+..+++
T Consensus 205 ~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~ 270 (308)
T TIGR02788 205 VTPKDLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQ 270 (308)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccc
Confidence 11 1122244679999999999995 12222 445444323356999999887766777665544433
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.43 E-value=2e-07 Score=92.85 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=37.8
Q ss_pred cccchHH--HH-HHHHHHHhcCCCcEEEEcCCC-----CCCCHHHHHHHHHHHHHHHh
Q 007057 412 LSTFSGH--IS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR 461 (620)
Q Consensus 412 ~s~lSgg--~k-rl~~i~~l~~~~~LlLLDEpt-----~glD~~~~~~l~~all~~l~ 461 (620)
.|..+|+ ++ ...+++.++.+|+++++|||| +||||.....+.+. +..++
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~-~~~~~ 204 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKE-LQAAA 204 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHH-HHHHh
Confidence 3445554 33 366778899999999999999 99999999999984 44444
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.42 E-value=3.6e-07 Score=90.26 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=59.6
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCC
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~ 431 (620)
+++|+||+||||||+++.+ +.+... ..+..+--+....+. .......+. ...+.....+|+. .+..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~-----~i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFEN-----ALKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHH-----HHHHHhcCC
Confidence 7899999999999999987 222110 011111111101100 000000000 0001111223332 223446678
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccce
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~ 485 (620)
|+++++|||. |+.....+ ++ ....|..++.|+|..+.....++...
T Consensus 75 pd~ii~gEir---d~e~~~~~----l~-~a~~G~~v~~t~Ha~~~~~~~~Rl~~ 120 (198)
T cd01131 75 PDVILVGEMR---DLETIRLA----LT-AAETGHLVMSTLHTNSAAKTIDRIID 120 (198)
T ss_pred cCEEEEcCCC---CHHHHHHH----HH-HHHcCCEEEEEecCCcHHHHHhHHHh
Confidence 9999999995 66543332 33 23457889999999875555555433
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.41 E-value=2.3e-06 Score=76.92 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHh-hCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhc
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~ 429 (620)
..++|+||+|+||||+++.+........ ...++..+........... ...........++.+. +.....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999921111000 0111111110111111111 1122223333344444 333334444
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEccC
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~-----all~~l~~~~~~vli~TH~ 473 (620)
..+.++++||+..-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4579999999999999887765543 1122233445678888884
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.40 E-value=5.9e-07 Score=109.24 Aligned_cols=69 Identities=20% Similarity=0.094 Sum_probs=60.1
Q ss_pred hccccccchHHHH-HHHHHHHhcC--------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH
Q 007057 408 LEQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (620)
Q Consensus 408 ~~~~~s~lSgg~k-rl~~i~~l~~--------~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~ 477 (620)
..+++.+|||||+ +++++++++. +|+++||||||+|||+.....+.. ++..+.+.|.+|+|+||..++.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHH
Confidence 3578999999999 5888888764 899999999999999999999998 5677888889999999977765
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=6.2e-07 Score=91.61 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=52.0
Q ss_pred cchHHH--------H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEccChhHHhhcccc
Q 007057 414 TFSGHI--------S-RIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (620)
Q Consensus 414 ~lSgg~--------k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~-l~~all~~l~~~~~~vli~TH~~~l~~~~~~~ 483 (620)
.+|||+ + ++..+++...++++.+| ||..+|+.+-.. + +++.+...+.+.|+.||.+......+.+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 457787 5 46666766679999999 999999533322 2 2455555567899999998777777777
Q ss_pred ceeeCceE
Q 007057 484 TRFENAAT 491 (620)
Q Consensus 484 ~~~~~g~~ 491 (620)
.++..|+.
T Consensus 204 ~vl~s~sr 211 (249)
T cd01128 204 DILKSGTR 211 (249)
T ss_pred EEcCCCCc
Confidence 77777765
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.33 E-value=7.7e-07 Score=109.50 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=63.5
Q ss_pred hccccccchHHHH-HHHHHHHh----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 408 LEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 408 ~~~~~s~lSgg~k-rl~~i~~l----~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.+..+..|||||+ ++++++++ +.+|+++|||||++|+|+.....+.. ++..+.+ +.++||+||++.+..+||+
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d~ 1160 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVADQ 1160 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhhh
Confidence 4578889999999 57776665 47789999999999999999999988 5555554 4789999999998788998
Q ss_pred ccee
Q 007057 483 DTRF 486 (620)
Q Consensus 483 ~~~~ 486 (620)
++.+
T Consensus 1161 ~~~~ 1164 (1179)
T TIGR02168 1161 LYGV 1164 (1179)
T ss_pred Heee
Confidence 8664
No 460
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=2.2e-06 Score=106.74 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=59.5
Q ss_pred hhccccccchHHHHH-------HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccChh
Q 007057 407 SLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (620)
Q Consensus 407 ~~~~~~s~lSgg~kr-------l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~----~~~~~vli~TH~~~ 475 (620)
......+.|||||++ ++++++++.+|.+++|||||+|||+.....|...+...+. ..|.++|++||+++
T Consensus 1192 ~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1192 TALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred eecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 334455799999996 6677889999999999999999999999999886665432 23679999999998
Q ss_pred -HHhhc
Q 007057 476 -LSCLK 480 (620)
Q Consensus 476 -l~~~~ 480 (620)
+..+|
T Consensus 1272 ~~~~~~ 1277 (1311)
T TIGR00606 1272 FVELLG 1277 (1311)
T ss_pred HHHHHh
Confidence 44555
No 461
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.20 E-value=2.9e-06 Score=102.13 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=65.2
Q ss_pred ccccccchHHHH-HHHHHHH------hcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 409 EQNLSTFSGHIS-RIVDILE------LVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 409 ~~~~s~lSgg~k-rl~~i~~------l~~~--~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
.+++++||||++ .++++++ +..+ -++++|||||.+||+.....++. +++.+...+.+|+||||+.++...
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence 579999999999 4555433 2344 58999999999999999999999 566677768899999999999999
Q ss_pred ccccceeeC
Q 007057 480 KDKDTRFEN 488 (620)
Q Consensus 480 ~~~~~~~~~ 488 (620)
++..+.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 998877653
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.08 E-value=4.9e-06 Score=102.55 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=62.5
Q ss_pred ccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccc
Q 007057 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (620)
Q Consensus 409 ~~~~s~lSgg~k-rl~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~ 483 (620)
...++.|||||+ .+++++.++ .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+||++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhccee
Confidence 456789999999 466666654 5889999999999999999999998 5555554 46799999998877899988
Q ss_pred ceee
Q 007057 484 TRFE 487 (620)
Q Consensus 484 ~~~~ 487 (620)
+.+.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 7654
No 463
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=1.3e-05 Score=91.53 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=75.3
Q ss_pred HHHcCCc-hhhccccccchHHHH-HHHHHHHhcC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 399 LADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 399 ~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~--~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+.++|+. =.+++...||||||. |+.++..+-. -.=+++||||.-||-+.+-..|.. .++.|++.|.|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence 3445554 257899999999998 4777765433 235899999999999999999999 6677999999999999999
Q ss_pred hHHhhccccceee------CceEEEe
Q 007057 475 DLSCLKDKDTRFE------NAATEFS 494 (620)
Q Consensus 475 ~l~~~~~~~~~~~------~g~~~~~ 494 (620)
+....||+++-+. .|.+++.
T Consensus 544 dti~~AD~iIDiGPgAG~~GGeIv~~ 569 (935)
T COG0178 544 DTIRAADHIIDIGPGAGEHGGEIVAE 569 (935)
T ss_pred HHHhhcCEEEeeCCCCCcCCCEEEEc
Confidence 9999999887654 3456554
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.03 E-value=8.5e-06 Score=97.93 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=59.0
Q ss_pred cccccchHHHHH-HHHH------HHhcC-----CC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEccChh
Q 007057 410 QNLSTFSGHISR-IVDI------LELVS-----RE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD 475 (620)
Q Consensus 410 ~~~s~lSgg~kr-l~~i------~~l~~-----~~-~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~-~vli~TH~~~ 475 (620)
.++..||||+++ ++++ ..++. .| .++||||||+|+|+.....+.. ++..+...|. +||++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence 457899999985 3322 23333 22 6799999999999999999998 6666765554 7999999999
Q ss_pred HHhhccccceee
Q 007057 476 LSCLKDKDTRFE 487 (620)
Q Consensus 476 l~~~~~~~~~~~ 487 (620)
+...|++++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 778899888775
No 465
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=98.02 E-value=6.7e-05 Score=64.20 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=68.5
Q ss_pred CcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCcccccccC-ceEEEEecccccCCCCcEEEEEecCCcEEEec
Q 007057 130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFME 208 (620)
Q Consensus 130 ~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~-r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~e 208 (620)
+++++|+.+|+.+.++.+.++.++++.. ...++....+...+. +|+|.|+......+|.+|+..++..+..+|.+
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~----~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t 76 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIR----KKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTT 76 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHH----HHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEEC
Confidence 5799999999999999998888877754 345555555555554 89999999998888989999888888888887
Q ss_pred cchhhhhhhHHHHH
Q 007057 209 PKGAVEFNNMEVRL 222 (620)
Q Consensus 209 p~~~~~l~n~~~~l 222 (620)
|. +..|+.++.++
T Consensus 77 ~~-l~~L~~~~~~~ 89 (92)
T PF05190_consen 77 PE-LKELNEELKEA 89 (92)
T ss_dssp HH-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 74 77777776554
No 466
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.01 E-value=1.1e-05 Score=95.80 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=47.7
Q ss_pred hcCCCcEEEEcCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH----------hhccccceeeCceE
Q 007057 428 LVSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYADLS----------CLKDKDTRFENAAT 491 (620)
Q Consensus 428 l~~~~~LlLLDEpt~gl-D~~~~~~l~~all~~l~~~~~~vli~TH~~~l~----------~~~~~~~~~~~g~~ 491 (620)
+..+|.++++|||..++ |+.....+.. +++.+.+.|++++++||+.+.. ..|+..+.+.++.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 35799999999999999 6887777777 5666777789999999998733 24555555555543
No 467
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=6.5e-05 Score=77.59 Aligned_cols=66 Identities=24% Similarity=0.229 Sum_probs=50.4
Q ss_pred cchHHHHH-HHHHHHhc--CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 414 TFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 414 ~lSgg~kr-l~~i~~l~--~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
.||-|..| ++++..+. ..|.++++|||-.+|-|.---+|+..+-. ..+. .-|+++||...+.+...
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~s-Aak~-sQv~VsTHS~rLl~~~e 338 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRS-AAKR-SQVIVSTHSPRLLNAVE 338 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHH-hhcc-ceEEEEeCCHHHHhhcc
Confidence 78988876 66665554 46789999999999999999999884444 3443 37999999988665433
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.95 E-value=1.3e-05 Score=81.35 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.7
Q ss_pred cCCCcEEEEcCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt~------glD~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
..+|++||+| |.+ ..|+.....+...+.+...+.++++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 5799999999 654 478888888888555544456899999999863
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.95 E-value=1.3e-05 Score=86.02 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=33.5
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.++-.+|+++++||+. |+........ ....|..++.|.|-.+.....++
T Consensus 190 ~~lr~~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~~~~R 238 (343)
T TIGR01420 190 AALREDPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQTIER 238 (343)
T ss_pred HhhccCCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHHHHHH
Confidence 3466899999999996 7776654333 23447888999998664433333
No 470
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.95 E-value=2.7e-05 Score=70.64 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHH--HHHHHHcCCchhhccccccchHHHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWF--DLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~--d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~ 426 (620)
.+ ..+.|+||.|+||||+++.+ ...+..... .+-++ ................ ........
T Consensus 18 ~~-~~v~i~G~~G~GKT~l~~~i--------~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 79 (151)
T cd00009 18 PP-KNLLLYGPPGTGKTTLARAI--------ANELFRPGA--PFLYLNASDLLEGLVVAELFGHF-------LVRLLFEL 79 (151)
T ss_pred CC-CeEEEECCCCCCHHHHHHHH--------HHHhhcCCC--CeEEEehhhhhhhhHHHHHhhhh-------hHhHHHHh
Confidence 35 78999999999999999999 221111111 11000 0110000000000000 11233334
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-----CCcEEEEEccChh
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD 475 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-----~~~~vli~TH~~~ 475 (620)
....++.++++||.-.. ++.....+.. ++..+.. .+..+|++|+...
T Consensus 80 ~~~~~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 80 AEKAKPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hccCCCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence 45678899999998775 5555566666 3444432 4567888888754
No 471
>PRK09183 transposase/IS protein; Provisional
Probab=97.95 E-value=2.4e-05 Score=80.64 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~kr 421 (620)
..++ +..| +.++|+||+|+|||+|..++|..... .|.-+- .++ ...++..+.... .. ..+ .
T Consensus 95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~-----~~~-~~~l~~~l~~a~-~~---~~~----~- 155 (259)
T PRK09183 95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR-----FTT-AADLLLQLSTAQ-RQ---GRY----K- 155 (259)
T ss_pred cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE-----EEe-HHHHHHHHHHHH-HC---CcH----H-
Confidence 4555 7788 88999999999999999999544321 231110 011 112222221100 00 001 0
Q ss_pred HHHHHHhcCCCcEEEEcCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 422 IVDILELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~g-lD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.........++++++||.+.. .+......+.. ++....+.+ .+|+||+..
T Consensus 156 -~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 156 -TTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred -HHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence 111123578899999999853 66655556666 555544444 567788774
No 472
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.91 E-value=0.00014 Score=83.81 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH-hhh
Q 007057 352 RVVVITGPNTGGKTASMKTL-GLA 374 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i-Gli 374 (620)
..++|+||||+||||+.+++ +..
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999999999999 443
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.91 E-value=4.6e-06 Score=82.04 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=55.8
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhH-----HHHhhCccccCCC---------------CCCccHHHHHHHHcCCchhhccc
Q 007057 353 VVVITGPNTGGKTASMKTL-GLAS-----LMSKAGLYLPAKN---------------HPRLPWFDLILADIGDHQSLEQN 411 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~-----~~a~~G~~vp~~~---------------~~~l~~~d~i~~~ig~~~~~~~~ 411 (620)
+++|+||+|||||||.+++ +++. ++..-..+.+... ...+..+...+..+...+.+..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 4799999999999999999 5541 1100111110000 00111223344555555566777
Q ss_pred cccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 412 ~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
.-.+|.|++....+ .+.+++++|+|.|+.+.++
T Consensus 81 ~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 81 VYDFKTHSRLKETV--TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence 77888877632222 4678899999999999987
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=4.4e-05 Score=84.72 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=36.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--hhCccccCCCCCCccHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGLYLPAKNHPRLPWFDLI 398 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--~~G~~vp~~~~~~l~~~d~i 398 (620)
+.+..+..| .+++++||||+||||++..+ +...... ....+++++. .+++.++++
T Consensus 248 ~~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQL 305 (484)
T PRK06995 248 SEDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQL 305 (484)
T ss_pred CccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHH
Confidence 344556678 89999999999999999999 3332221 1123566664 456666655
No 475
>PRK00064 recF recombination protein F; Reviewed
Probab=97.89 E-value=2.5e-05 Score=84.31 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=57.7
Q ss_pred ccccccchHHHHH-HHHHHHhc---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HH
Q 007057 409 EQNLSTFSGHISR-IVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (620)
Q Consensus 409 ~~~~s~lSgg~kr-l~~i~~l~---------~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~ 477 (620)
......+|.||++ +.+++.++ .+|+++|||||+++||+..+..+...+.+ .+..+++|||+.+ +.
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~ 343 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLA 343 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhh
Confidence 3566789999995 66666553 79999999999999999999888773322 2457899999876 44
Q ss_pred hhc--cccceeeCceE
Q 007057 478 CLK--DKDTRFENAAT 491 (620)
Q Consensus 478 ~~~--~~~~~~~~g~~ 491 (620)
.++ .+++.+.+|.+
T Consensus 344 ~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 344 DLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhccCcEEEEeCCEE
Confidence 443 24556666654
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.88 E-value=1e-05 Score=71.76 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=27.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.+.+| ++++|+||+|||||||++++
T Consensus 7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 7 GVLVDVYGK-VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence 788999999 99999999999999999998
No 477
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=0.0004 Score=75.06 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=38.3
Q ss_pred CeEEEeeeeeecCCc-c-------------ccccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 325 SEMTVGSLSKGISDF-P-------------VPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~-~-------------v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+.+.++||++.|.+. . +++.+.+.+| +.++|+||.|+||||+++.+
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence 457788888888542 1 1677888999 99999999999999999998
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.87 E-value=1.2e-05 Score=78.50 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
-+.+.+..| ..++|+|||||||||+++++
T Consensus 17 ~l~~~v~~g-~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 17 YLWLAVEAR-KNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 355667788 89999999999999999999
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.81 E-value=0.0002 Score=71.97 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=65.1
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH-HhhCccccCCCCCCccHHHHHHHHcCCc-------------hhh----
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH-------------QSL---- 408 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~-------------~~~---- 408 (620)
+++| ++++|.||+|+|||||...+..-.+. ...+.|+..+.. ...+-+....+|.. +..
T Consensus 17 i~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~--~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 17 IPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES--RESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 5678 99999999999999999887321111 112234433221 11111111222211 000
Q ss_pred --ccccccchHHHH--HHHHHHHhc-CCCcEEEEcCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 409 --EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 409 --~~~~s~lSgg~k--rl~~i~~l~-~~~~LlLLDEpt~gl--D~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
...+..++..+. ++..+.... .++.++++|-|+.-+ +|.....+...+...+++.+.|+|+++|..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 001122333332 222222222 256788888886542 443334444556666777899999999964
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00024 Score=77.77 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=53.6
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--HhhCccccCCCCCCccHHHHHHH---HcCCchhhccccccchHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL-GLASLM--SKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISR 421 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~s~lSgg~kr 421 (620)
..| ++++++||||+||||+++.+ |..... ...+.++..+. .+++.++++.. .+|..-. ...... .
T Consensus 189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~~------~v~~~~-d 259 (420)
T PRK14721 189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSVR------SIKDIA-D 259 (420)
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCcee------cCCCHH-H
Confidence 567 89999999999999999988 432211 12234455554 56777776532 2332211 111111 2
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~ 448 (620)
+..++..+.+.+++++|.+ |..+..
T Consensus 260 l~~al~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 260 LQLMLHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHHHHHhcCCCEEEecCC--CCCcch
Confidence 3344445678899999976 555543
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.73 E-value=2.7e-05 Score=61.98 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=23.2
Q ss_pred ccceecC-CceEEEEEcCCCCcHhHHHHHH
Q 007057 343 IDIKVEC-ETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 343 vsl~i~~-g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.++.+.+ | .+++|+||||+||||+|..+
T Consensus 15 ~~~~~~~~g-~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 15 ETIDFDPRG-DVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred eEEeecCCC-cEEEEECCCCCCHHHHHHHH
Confidence 3455554 4 68999999999999999999
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.71 E-value=0.00035 Score=77.13 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=85.5
Q ss_pred ccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC-----CCccHHHHHH-HHcCCchhhcc----
Q 007057 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-----PRLPWFDLIL-ADIGDHQSLEQ---- 410 (620)
Q Consensus 341 v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~-----~~l~~~d~i~-~~ig~~~~~~~---- 410 (620)
++.-+.+.+| ++++|+||||+|||||++++ .+...|..+. ..-.-+..+. ..++.. .+.+
T Consensus 154 iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I--------~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~-~l~~tvvv 223 (440)
T TIGR01026 154 IDGLLTVGKG-QRIGIFAGSGVGKSTLLGMI--------ARNTEADVNVIALIGERGREVREFIEHDLGEE-GLKRSVVV 223 (440)
T ss_pred eeeccccCCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCEEEEEEEeecchHHHHHHHHHhccc-ccceEEEE
Confidence 4444899999 99999999999999999999 4433222110 0000111121 222211 1111
Q ss_pred -ccccchHHHH-HHHHH---HH--h--cCCCcEEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHHhc
Q 007057 411 -NLSTFSGHIS-RIVDI---LE--L--VSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD 462 (620)
Q Consensus 411 -~~s~lSgg~k-rl~~i---~~--l--~~~~~LlLLD-----------------Ep--t~glD~~~~~~l~~all~~l~~ 462 (620)
..+.=|-+++ +...+ .+ + ....-|+++| || +.|.||.....+.. +++....
T Consensus 224 ~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~ERag~ 302 (440)
T TIGR01026 224 VATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLERAGA 302 (440)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHHHhcc
Confidence 1222234555 21111 11 1 2344567777 53 56899988888888 7777665
Q ss_pred CCc-------EEEEEccChhHHhhccccceeeCceEEEec
Q 007057 463 RVG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 463 ~~~-------~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
.++ ||++.+||+ ...+++....+.+|++.++.
T Consensus 303 ~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr 341 (440)
T TIGR01026 303 SGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSR 341 (440)
T ss_pred CCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEec
Confidence 555 778889987 34577888888999998874
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.70 E-value=0.00026 Score=78.65 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=72.3
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHh-hhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iG-li~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
+.+| .++.|.|++|+|||||+.++. .+........|+-.+. ...-+..-..++|....--.-....+. .++...
T Consensus 91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~--~~I~~~ 165 (454)
T TIGR00416 91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNW--EQICAN 165 (454)
T ss_pred ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCH--HHHHHH
Confidence 4578 899999999999999999982 2211111223443332 111111123345543211011111111 122111
Q ss_pred HHhcCCCcEEEEcCCCCCCC---------HHHHHHHHHHHHHHHhcCCcEEEEEccChh---------HHhhccccceee
Q 007057 426 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRFE 487 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD---------~~~~~~l~~all~~l~~~~~~vli~TH~~~---------l~~~~~~~~~~~ 487 (620)
. --.+|+++++|-...=.. +.....+...+.+..++.+.|+++++|... +..++|.++.+.
T Consensus 166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le 244 (454)
T TIGR00416 166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE 244 (454)
T ss_pred H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEe
Confidence 1 235799999998764221 222334444466666778999999999643 234566665554
Q ss_pred C
Q 007057 488 N 488 (620)
Q Consensus 488 ~ 488 (620)
.
T Consensus 245 ~ 245 (454)
T TIGR00416 245 G 245 (454)
T ss_pred c
Confidence 3
No 484
>PRK04296 thymidine kinase; Provisional
Probab=97.69 E-value=0.00015 Score=71.14 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=66.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCc----cccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHH
Q 007057 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGL----YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~----~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
| .+.+|+||.|+||||++..+.. -+...|. +.|.-. .... ...+..++|..-.. ............+..
T Consensus 2 g-~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 2 A-KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE- 74 (190)
T ss_pred c-EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEecccc-cccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh-
Confidence 5 7899999999999998877622 1111231 223211 1111 22344455532110 011111111111111
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC-----------hhHHhhccccceeeC
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-----------ADLSCLKDKDTRFEN 488 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~-----------~~l~~~~~~~~~~~~ 488 (620)
...+.++|++||.-. ++... +.+ +++.+...|.+|+++.++ ..+..+||.+..+..
T Consensus 75 --~~~~~dvviIDEaq~-l~~~~---v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 75 --EGEKIDCVLIDEAQF-LDKEQ---VVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred --hCCCCCEEEEEcccc-CCHHH---HHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 345779999999932 44322 333 566667778999999999 235567777766544
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.67 E-value=3.6e-05 Score=86.35 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=64.7
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH--HhhCccccCCCCCCccHHHHHHHHcCCch--hh--------cc----
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDHQ--SL--------EQ---- 410 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~--a~~G~~vp~~~~~~l~~~d~i~~~ig~~~--~~--------~~---- 410 (620)
+++| ..+.|+||+|+|||||..++...... ...+.|+-.+. ..-. +-+-+..+|..- .. +.
T Consensus 18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-~~~~-l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-SPQD-IIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CHHH-HHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 4578 89999999999999999988221111 23445554332 1111 112222333210 00 00
Q ss_pred ----ccccchHHHH--HHHHHHHhcCCCcEEEEc---CCCCCCCH--HHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 411 ----NLSTFSGHIS--RIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 411 ----~~s~lSgg~k--rl~~i~~l~~~~~LlLLD---Ept~glD~--~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
.+..+..... ++.... --.+++.+++| .+....|. ..+..+.. ++..+++.|+|+|++||+.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~l-s~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAI-RKYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHHHHHHHHH-HHhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence 0111211111 111111 12456777888 33334443 34455555 67778888999999999864
No 486
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=5.9e-05 Score=81.53 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=48.8
Q ss_pred ccchHHHHH-HHHHHHhcC---------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 413 STFSGHISR-IVDILELVS---------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 413 s~lSgg~kr-l~~i~~l~~---------~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
..+|.||++ +.+++.++. +|+++|||||+++||+..+..+...+.+ .|..+++|||+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~----~~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS----LGVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh----cCCEEEEEecChh
Confidence 467999995 777777777 8999999999999999999988874333 2678999999876
No 487
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.65 E-value=6.9e-05 Score=73.20 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHhHHHHHHhhhHHHHhhC-ccccCCCC-------CCccHHHHHHHHcCCchhhccccccchHHHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTLGLASLMSKAG-LYLPAKNH-------PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~iGli~~~a~~G-~~vp~~~~-------~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~ 424 (620)
+++|||.-||||||+.+.+. ..| ..+-.... ..-+.+..+...+|.. .++. .|...+..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~------~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~-i~~~-----~g~idr~~L 68 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLA------DKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQ-ILNE-----DGELDRKAL 68 (188)
T ss_pred CEEEECCCCCCHHHHHHHHH------HhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHH-HhCC-----CCCCCHHHH
Confidence 47999999999999999981 122 22221110 1113455666666622 1111 233447777
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh---HHhhcccccee
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD---LSCLKDKDTRF 486 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~---l~~~~~~~~~~ 486 (620)
+..+..+|..+..+| +.++|.-...+...+ ..+...+.++++.+|.+. +..+|+.++.+
T Consensus 69 ~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V 130 (188)
T TIGR00152 69 GERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQSKLAYVLLDVPLLFENKLRSLCDRVIVV 130 (188)
T ss_pred HHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhcCCCEEEEEchHhhhCCcHHhCCEEEEE
Confidence 888888998877776 889999999888744 434444568999999874 34556655443
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.64 E-value=0.00045 Score=74.79 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhh-hHHHHhhCccccCCCCCCccHHHHHHHHcCCch-hhccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGl-i~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~s~lSgg~krl~~ 424 (620)
+.+| .++.|.||+|+|||||+.++.. +..-.....|+..+. ....+..-..++|... .+. -..... ..++..
T Consensus 79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~-l~~e~~--le~I~~ 152 (372)
T cd01121 79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLY-LLAETN--LEDILA 152 (372)
T ss_pred ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEE-EEccCc--HHHHHH
Confidence 4567 8999999999999999999832 111111223443332 1222222234555432 111 011111 112111
Q ss_pred HHHhcCCCcEEEEcCCCC----CCC-----HHHHHHHHHHHHHHHhcCCcEEEEEccChh---------HHhhcccccee
Q 007057 425 ILELVSRESLVLIDEIGS----GTD-----PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRF 486 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~----glD-----~~~~~~l~~all~~l~~~~~~vli~TH~~~---------l~~~~~~~~~~ 486 (620)
.. ...+|++|++|+... .+| ......+...+.+..++.+.++|++.|-.. +..++|.++.+
T Consensus 153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~l 231 (372)
T cd01121 153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYF 231 (372)
T ss_pred HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEE
Confidence 11 235899999999743 222 222233444466666777889999988532 34456655555
Q ss_pred e
Q 007057 487 E 487 (620)
Q Consensus 487 ~ 487 (620)
+
T Consensus 232 e 232 (372)
T cd01121 232 E 232 (372)
T ss_pred E
Confidence 4
No 489
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00038 Score=75.10 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=58.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH---hhCccccCCCCCCccHHHHHH---HHcCCchhhccccccc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS---KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a---~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~s~l 415 (620)
.++..+..| .+++++||||+||||++..++-..... ....++..+. ..++-.+++- ..+|..-..-+....+
T Consensus 129 ~~~~~~~~g-~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~~~~~~l 206 (374)
T PRK14722 129 SEDALMERG-GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAVKDGGDL 206 (374)
T ss_pred CCCccccCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCceEecCCcccH
Confidence 455677888 899999999999999999994322221 1123444443 3455555543 2334321111112222
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEcCCCCC-CCHHHHHHH
Q 007057 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVAL 452 (620)
Q Consensus 416 Sgg~krl~~i~~l~~~~~LlLLDEpt~g-lD~~~~~~l 452 (620)
...+.-..+.+++|+|.|+.. .|......+
T Consensus 207 -------~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~L 237 (374)
T PRK14722 207 -------QLALAELRNKHMVLIDTIGMSQRDRTVSDQI 237 (374)
T ss_pred -------HHHHHHhcCCCEEEEcCCCCCcccHHHHHHH
Confidence 223344567899999999765 344433333
No 490
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00012 Score=77.96 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=42.7
Q ss_pred ccchHHHHH-HHHHHHh---------cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HH
Q 007057 413 STFSGHISR-IVDILEL---------VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (620)
Q Consensus 413 s~lSgg~kr-l~~i~~l---------~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~ 477 (620)
...|-||++ +.+++.+ ..+++++|||+.++.||+.-+..|+.. .+.+.-+++||-+.+ +.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-----~~~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-----IELGVQVFVTTTDLEDID 344 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-----cccCCeEEEEccCHHHhh
Confidence 456778886 4444332 357799999999999999999998883 233566777776655 44
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00076 Score=78.48 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=59.0
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--hhCccccCCCCCCccHHHHHHH---HcCCchhhccccccc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTF 415 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~s~l 415 (620)
+.++.+..| ++++++||||+||||++..+ +...... +.-.++..+. .+++..+++.. .+|..-..-.
T Consensus 177 ~~~~~~~~g-~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~----- 249 (767)
T PRK14723 177 DEDALLAQG-GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVK----- 249 (767)
T ss_pred CCCcccCCC-eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccC-----
Confidence 445556677 89999999999999999999 4432221 1113445543 45566665532 3333211111
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEcCCCCC-CCHHHHHHHH
Q 007057 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALA 453 (620)
Q Consensus 416 Sgg~krl~~i~~l~~~~~LlLLDEpt~g-lD~~~~~~l~ 453 (620)
+. ..+..++.-+.+.++||+|=|+.. .|......+.
T Consensus 250 ~~--~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~ 286 (767)
T PRK14723 250 DA--ADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIA 286 (767)
T ss_pred CH--HHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHH
Confidence 11 123333344557799999988843 5655444443
No 492
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.56 E-value=0.00023 Score=73.16 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.++..+..+..+++|+||||+||||+++.+
T Consensus 34 ~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 34 YLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 344445555358999999999999999998
No 493
>PRK06526 transposase; Provisional
Probab=97.56 E-value=0.00034 Score=71.89 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=60.0
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~ 427 (620)
..+ ..++|+||.|+|||+|...+|.-.. +.|.- +.+.-..+++..+.... +.| .....+.
T Consensus 96 ~~~-~nlll~Gp~GtGKThLa~al~~~a~--~~g~~------v~f~t~~~l~~~l~~~~---------~~~--~~~~~l~ 155 (254)
T PRK06526 96 TGK-ENVVFLGPPGTGKTHLAIGLGIRAC--QAGHR------VLFATAAQWVARLAAAH---------HAG--RLQAELV 155 (254)
T ss_pred hcC-ceEEEEeCCCCchHHHHHHHHHHHH--HCCCc------hhhhhHHHHHHHHHHHH---------hcC--cHHHHHH
Confidence 345 6799999999999999999954322 22321 11111223333332110 001 1111122
Q ss_pred hcCCCcEEEEcCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 428 LVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 428 l~~~~~LlLLDEpt~g-lD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.+.++++||+||++.- .++.....+.. ++....+. +.+|++|+..
T Consensus 156 ~l~~~dlLIIDD~g~~~~~~~~~~~L~~-li~~r~~~-~s~IitSn~~ 201 (254)
T PRK06526 156 KLGRYPLLIVDEVGYIPFEPEAANLFFQ-LVSSRYER-ASLIVTSNKP 201 (254)
T ss_pred HhccCCEEEEcccccCCCCHHHHHHHHH-HHHHHHhc-CCEEEEcCCC
Confidence 3467899999999864 56666666666 55543443 4578888875
No 494
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.0023 Score=66.32 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHh-hhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iG-li~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~ 427 (620)
+| ++++++||||+||||+++.++ .+........++-..+ .+++.++++.......+ +.- ....+. ..+..++.
T Consensus 74 ~~-~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~-~~~-~~~~~~--~~l~~~l~ 147 (270)
T PRK06731 74 EV-QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIG-FEV-IAVRDE--AAMTRALT 147 (270)
T ss_pred CC-CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcC-ceE-EecCCH--HHHHHHHH
Confidence 56 899999999999999999993 2221111223344443 34555655543322111 000 001111 12222221
Q ss_pred ---hcCCCcEEEEcCCCCCC-CHHHHHHHHH
Q 007057 428 ---LVSRESLVLIDEIGSGT-DPSEGVALAT 454 (620)
Q Consensus 428 ---l~~~~~LlLLDEpt~gl-D~~~~~~l~~ 454 (620)
-..+.+++|+|-|++.- |...-..+..
T Consensus 148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~ 178 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIE 178 (270)
T ss_pred HHHhcCCCCEEEEECCCCCcCCHHHHHHHHH
Confidence 22467999999999874 5555555554
No 495
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.55 E-value=0.00026 Score=71.33 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-------hhCccccCCCCCCccHHHHHHHHcCCc-hhhcccc---ccc
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 415 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~---s~l 415 (620)
++.| +++.|+||+|+||||++.++.....+. ....|+-.++......+.+++..++.. +.+...+ ..+
T Consensus 16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 4578 999999999999999999994332221 122344333321222333444443321 1111111 112
Q ss_pred hHHHH-H-HHHHHH---hcCCCcEEEEcCCCCCC-----C---HHHHHH----HHHHHHHHHhcCCcEEEEEccCh
Q 007057 416 SGHIS-R-IVDILE---LVSRESLVLIDEIGSGT-----D---PSEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 416 Sgg~k-r-l~~i~~---l~~~~~LlLLDEpt~gl-----D---~~~~~~----l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+. . +..+.. -..++.+|++|-.++-. + ...+.. +...+.....+.+++||+++|-.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 22211 1 122211 12278999999998521 1 123322 33323232245688888888754
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.53 E-value=0.00025 Score=87.69 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=23.5
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++....+ ++++|+||+|+|||||++.+
T Consensus 201 ~l~~~~~-~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 201 HLESEEV-RMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred ccccCce-EEEEEEcCCCCchHHHHHHH
Confidence 4455566 89999999999999999999
No 497
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.52 E-value=0.0003 Score=76.89 Aligned_cols=103 Identities=23% Similarity=0.224 Sum_probs=56.7
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHH--HH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV--DI 425 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~--~i 425 (620)
.++ ..+.|.||+|+|||++.|.+ ++..- . ....+..- .+. .+.+. .+.+.+. +.
T Consensus 177 ~~p-kgvLL~GppGTGKT~LAkal--------A~~l~-~-~fi~i~~s-~l~---------~k~~g---e~~~~lr~lf~ 232 (398)
T PTZ00454 177 DPP-RGVLLYGPPGTGKTMLAKAV--------AHHTT-A-TFIRVVGS-EFV---------QKYLG---EGPRMVRDVFR 232 (398)
T ss_pred CCC-ceEEEECCCCCCHHHHHHHH--------HHhcC-C-CEEEEehH-HHH---------HHhcc---hhHHHHHHHHH
Confidence 344 56899999999999999999 22110 0 00011100 111 11111 1122222 22
Q ss_pred HHhcCCCcEEEEcCC----------CCCCCHHHHHHHHHHHHHHHhc----CCcEEEEEccChh
Q 007057 426 LELVSRESLVLIDEI----------GSGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (620)
Q Consensus 426 ~~l~~~~~LlLLDEp----------t~glD~~~~~~l~~all~~l~~----~~~~vli~TH~~~ 475 (620)
.+....|.+|++||+ .+|.|......+.. ++..+.. .+..+|++||+.+
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~-LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE-LLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH-HHHHhhccCCCCCEEEEEecCCch
Confidence 345678999999993 44556555545544 5554432 2457899999876
No 498
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.52 E-value=0.00013 Score=81.67 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=67.7
Q ss_pred eeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCch-
Q 007057 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ- 406 (620)
Q Consensus 330 ~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~- 406 (620)
.|++..||...+ .+++.+..| +.++|+||||+||||+++.+ .|...|.++...+. ...++...|...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G-~~llliG~~GsGKTtLak~L--------~gllpp~~g~e~le-~~~i~s~~g~~~~ 257 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG-HNLLLIGPPGTGKTMLASRI--------NGLLPDLSNEEALE-SAAILSLVNAESV 257 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC-cEEEEECCCCCcHHHHHHHH--------hccCCCCCCcEEEe-cchhhhhhccccc
Confidence 467777776555 888999888 99999999999999999999 66666655532222 223333333211
Q ss_pred --hhc-ccc---------ccchH-HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 007057 407 --SLE-QNL---------STFSG-HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (620)
Q Consensus 407 --~~~-~~~---------s~lSg-g~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~a 455 (620)
.+. ++. ..|-| |.. +-. ...+++ ..+++|||. .-+++.....|.+.
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG-~l~~A~-gGvLfLDEi-~e~~~~~~~~L~~~ 317 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGAIPGPG-EISLAH-NGVLFLDEL-PEFERRTLDALREP 317 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCceehhh-Hhhhcc-CCEEecCCc-hhCCHHHHHHHHHH
Confidence 110 110 11223 322 211 223334 479999997 44777666666663
No 499
>PRK06893 DNA replication initiation factor; Validated
Probab=97.51 E-value=0.00033 Score=70.82 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCC
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~ 431 (620)
..+.|.||.|+|||+|+..+|-.... .|. ....++. ... ..++. .+...+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~--~~~-----~~~y~~~-~~~--------------~~~~~------~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL--NQR-----TAIYIPL-SKS--------------QYFSP------AVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCC-----CeEEeeH-HHh--------------hhhhH------HHHhhccc
Confidence 56899999999999999999433211 111 0011111 100 00000 11223457
Q ss_pred CcEEEEcCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 432 ESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 432 ~~LlLLDEpt~gl-D~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.++|++||+.... +......+.. ++....+.++++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~-l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFD-LFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHH-HHHHHHHcCCcEEEEeCCC
Confidence 7999999998865 4444455666 6666776677777766664
No 500
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.50 E-value=6.9e-05 Score=82.26 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=28.8
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS 375 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~ 375 (620)
++++++.+| ++++|+|||||||||||+ .|+..
T Consensus 24 ~Vsl~i~~G-Eiv~L~G~SGsGKSTLLr-~~l~~ 55 (504)
T TIGR03238 24 KFNKELPSS-SLLFLCGSSGDGKSEILA-ENKRK 55 (504)
T ss_pred CCceeecCC-CEEEEECCCCCCHHHHHh-cCCCC
Confidence 899999999 999999999999999999 64443
Done!