Query 007057
Match_columns 620
No_of_seqs 468 out of 4572
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 1.2E-69 4.2E-74 629.9 34.6 482 1-538 302-796 (800)
2 3thx_B DNA mismatch repair pro 100.0 1.8E-63 6.3E-68 582.8 41.5 488 1-536 355-875 (918)
3 3thx_A DNA mismatch repair pro 100.0 1.6E-63 5.4E-68 585.0 39.5 494 1-541 337-854 (934)
4 1ewq_A DNA mismatch repair pro 100.0 7.8E-63 2.7E-67 569.9 40.8 467 1-538 283-762 (765)
5 2o8b_B DNA mismatch repair pro 100.0 6.5E-62 2.2E-66 577.7 32.4 490 1-540 431-987 (1022)
6 2pcj_A ABC transporter, lipopr 100.0 5.1E-30 1.7E-34 256.2 17.7 167 326-494 4-220 (224)
7 3gfo_A Cobalt import ATP-bindi 100.0 5.3E-30 1.8E-34 263.5 17.6 167 326-494 7-225 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 9.6E-30 3.3E-34 259.1 17.9 168 325-494 14-227 (256)
9 3tif_A Uncharacterized ABC tra 100.0 1E-29 3.5E-34 255.8 17.3 166 327-494 2-226 (235)
10 4g1u_C Hemin import ATP-bindin 100.0 7.8E-30 2.7E-34 261.2 16.8 167 326-494 11-229 (266)
11 2olj_A Amino acid ABC transpor 100.0 2.1E-29 7.2E-34 257.5 18.2 167 326-494 24-240 (263)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-29 6.9E-34 267.4 18.2 168 326-494 4-220 (359)
13 1g6h_A High-affinity branched- 100.0 2.5E-29 8.4E-34 256.3 17.3 167 326-494 7-234 (257)
14 1b0u_A Histidine permease; ABC 100.0 2.6E-29 8.9E-34 256.9 16.8 167 326-494 6-234 (262)
15 1ji0_A ABC transporter; ATP bi 100.0 2.4E-29 8.2E-34 253.9 15.8 167 326-494 6-220 (240)
16 3tui_C Methionine import ATP-b 100.0 4.3E-29 1.5E-33 265.1 17.9 170 324-495 22-246 (366)
17 2nq2_C Hypothetical ABC transp 100.0 1.4E-28 4.9E-33 250.1 16.9 166 326-494 4-209 (253)
18 1z47_A CYSA, putative ABC-tran 100.0 2.3E-28 7.8E-33 259.3 18.8 170 323-494 11-227 (355)
19 3rlf_A Maltose/maltodextrin im 100.0 1.6E-28 5.3E-33 262.4 17.4 167 326-494 3-215 (381)
20 2yz2_A Putative ABC transporte 100.0 2.1E-28 7.3E-33 250.6 17.6 167 326-494 2-219 (266)
21 2ihy_A ABC transporter, ATP-bi 100.0 6.7E-29 2.3E-33 255.9 12.0 168 325-494 20-244 (279)
22 2yyz_A Sugar ABC transporter, 100.0 5.2E-28 1.8E-32 257.1 18.4 168 326-494 3-215 (359)
23 3d31_A Sulfate/molybdate ABC t 100.0 3.9E-28 1.3E-32 257.2 17.4 167 327-494 2-209 (348)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 3.1E-28 1.1E-32 247.2 15.5 167 326-494 3-225 (250)
25 2ff7_A Alpha-hemolysin translo 100.0 5.3E-28 1.8E-32 245.1 17.1 166 326-494 7-224 (247)
26 2ixe_A Antigen peptide transpo 100.0 5.8E-28 2E-32 248.0 17.1 168 325-494 15-237 (271)
27 2onk_A Molybdate/tungstate ABC 100.0 3.5E-28 1.2E-32 245.3 15.0 164 327-494 2-208 (240)
28 2it1_A 362AA long hypothetical 100.0 6.1E-28 2.1E-32 256.9 17.0 167 326-494 3-215 (362)
29 1g29_1 MALK, maltose transport 100.0 9.8E-28 3.4E-32 256.4 17.6 168 326-494 3-221 (372)
30 1v43_A Sugar-binding transport 99.9 9E-28 3.1E-32 256.4 15.9 168 326-494 11-223 (372)
31 2zu0_C Probable ATP-dependent 99.9 1.3E-27 4.4E-32 245.0 15.7 168 325-494 19-246 (267)
32 1sgw_A Putative ABC transporte 99.9 5.3E-28 1.8E-32 239.8 12.1 158 325-486 9-206 (214)
33 1oxx_K GLCV, glucose, ABC tran 99.9 1.3E-27 4.4E-32 253.9 15.9 168 326-494 3-222 (353)
34 2qi9_C Vitamin B12 import ATP- 99.9 3.4E-27 1.2E-31 239.3 16.8 164 326-494 4-214 (249)
35 2pjz_A Hypothetical protein ST 99.9 2.9E-27 1E-31 241.6 16.2 161 327-494 2-207 (263)
36 1mv5_A LMRA, multidrug resista 99.9 1.4E-27 4.9E-32 241.3 13.3 164 327-493 2-217 (243)
37 2pze_A Cystic fibrosis transme 99.9 3.3E-27 1.1E-31 236.6 14.3 168 325-494 5-210 (229)
38 2ghi_A Transport protein; mult 99.9 6.2E-27 2.1E-31 239.0 16.3 167 325-494 16-234 (260)
39 2cbz_A Multidrug resistance-as 99.9 5E-27 1.7E-31 236.5 14.2 167 326-494 3-209 (237)
40 3nh6_A ATP-binding cassette SU 99.9 8.3E-27 2.8E-31 243.0 15.8 167 325-494 52-269 (306)
41 3gd7_A Fusion complex of cysti 99.9 3.4E-26 1.2E-30 245.7 13.0 167 325-494 18-234 (390)
42 2bbs_A Cystic fibrosis transme 99.9 2.2E-25 7.6E-30 230.8 10.8 167 325-494 39-239 (290)
43 3ozx_A RNAse L inhibitor; ATP 99.9 8.5E-25 2.9E-29 244.5 14.9 164 324-488 267-461 (538)
44 1yqt_A RNAse L inhibitor; ATP- 99.9 1.8E-24 6.2E-29 242.1 16.5 163 325-488 286-477 (538)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 2E-24 6.8E-29 241.8 16.7 156 330-488 25-233 (538)
46 3bk7_A ABC transporter ATP-bin 99.9 3.2E-24 1.1E-28 242.9 18.1 163 325-488 356-547 (607)
47 3b5x_A Lipid A export ATP-bind 99.9 3.2E-24 1.1E-28 242.8 17.1 167 325-494 340-559 (582)
48 3bk7_A ABC transporter ATP-bin 99.9 4.2E-24 1.4E-28 242.0 18.0 156 330-488 95-303 (607)
49 3b60_A Lipid A export ATP-bind 99.9 2.9E-24 9.9E-29 243.1 16.1 167 325-494 340-559 (582)
50 2yl4_A ATP-binding cassette SU 99.9 4.9E-24 1.7E-28 241.8 16.3 167 325-494 339-562 (595)
51 3qf4_B Uncharacterized ABC tra 99.9 5.2E-24 1.8E-28 241.7 15.9 167 325-494 353-570 (598)
52 3qf4_A ABC transporter, ATP-bi 99.9 8.8E-24 3E-28 239.2 16.5 167 325-494 340-558 (587)
53 4a82_A Cystic fibrosis transme 99.9 8.1E-24 2.8E-28 239.2 15.2 167 325-494 338-556 (578)
54 3j16_B RLI1P; ribosome recycli 99.9 2.1E-23 7.2E-28 235.9 16.8 156 331-488 82-296 (608)
55 2iw3_A Elongation factor 3A; a 99.9 3.3E-23 1.1E-27 243.0 18.1 162 326-492 435-624 (986)
56 2iw3_A Elongation factor 3A; a 99.9 4.9E-24 1.7E-28 250.0 10.8 95 396-494 881-979 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 9.8E-23 3.4E-27 230.5 14.6 164 330-493 350-550 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.9 3.6E-22 1.2E-26 223.3 16.9 155 331-488 4-212 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 1E-21 3.5E-26 225.8 14.9 95 399-494 186-290 (670)
60 3g5u_A MCG1178, multidrug resi 99.9 2.5E-21 8.4E-26 236.5 15.8 168 324-494 1028-1250(1284)
61 3g5u_A MCG1178, multidrug resi 99.8 5.9E-21 2E-25 233.2 14.3 167 325-494 386-605 (1284)
62 3ux8_A Excinuclease ABC, A sub 99.8 1.9E-20 6.5E-25 215.2 13.8 95 399-494 527-632 (670)
63 4f4c_A Multidrug resistance pr 99.8 2.7E-20 9.4E-25 227.8 15.7 168 324-494 413-633 (1321)
64 4f4c_A Multidrug resistance pr 99.8 2.5E-20 8.6E-25 228.1 12.8 167 324-494 1074-1296(1321)
65 2r6f_A Excinuclease ABC subuni 99.8 1.6E-19 5.6E-24 210.3 17.0 97 397-494 827-934 (972)
66 2ygr_A Uvrabc system protein A 99.8 3E-19 1E-23 208.8 18.0 97 397-494 845-952 (993)
67 2vf7_A UVRA2, excinuclease ABC 99.8 1.5E-19 5.1E-24 210.1 15.2 97 397-494 712-819 (842)
68 4gp7_A Metallophosphoesterase; 99.8 5.1E-20 1.7E-24 175.7 6.4 134 342-479 1-164 (171)
69 3pih_A Uvrabc system protein A 99.8 4.8E-19 1.6E-23 207.5 14.7 96 398-494 788-894 (916)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6.5E-19 2.2E-23 188.2 13.5 83 409-492 274-363 (365)
71 4aby_A DNA repair protein RECN 99.8 1.3E-18 4.6E-23 188.1 13.9 82 411-494 291-380 (415)
72 2npi_A Protein CLP1; CLP1-PCF1 99.7 5.9E-20 2E-24 201.5 -3.4 156 325-492 117-329 (460)
73 1ye8_A Protein THEP1, hypothet 99.7 7.6E-18 2.6E-22 162.0 3.7 125 353-482 2-152 (178)
74 1e69_A Chromosome segregation 99.7 1.4E-16 4.7E-21 167.2 12.6 84 408-493 213-303 (322)
75 3b85_A Phosphate starvation-in 99.7 2.6E-18 8.8E-23 169.4 -2.3 122 347-478 19-162 (208)
76 3qkt_A DNA double-strand break 99.7 4.7E-16 1.6E-20 164.3 14.9 78 409-487 243-327 (339)
77 1tq4_A IIGP1, interferon-induc 99.6 1.9E-16 6.4E-21 171.1 -1.0 139 342-484 41-248 (413)
78 1tf7_A KAIC; homohexamer, hexa 99.5 2.4E-15 8.1E-20 168.1 6.5 160 326-490 257-444 (525)
79 1znw_A Guanylate kinase, GMP k 99.5 2.4E-16 8.1E-21 154.6 -3.8 60 427-487 137-202 (207)
80 2ehv_A Hypothetical protein PH 99.5 2.5E-14 8.4E-19 142.8 9.7 138 346-487 26-206 (251)
81 2obl_A ESCN; ATPase, hydrolase 99.5 2.5E-15 8.7E-20 159.1 2.1 154 326-495 45-248 (347)
82 2v9p_A Replication protein E1; 99.5 2E-16 6.9E-21 164.3 -8.3 139 327-494 102-258 (305)
83 2pt7_A CAG-ALFA; ATPase, prote 99.5 2.5E-15 8.6E-20 158.2 -0.9 136 329-489 151-290 (330)
84 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 3.8E-13 1.3E-17 125.3 10.5 79 407-486 50-135 (148)
85 4a74_A DNA repair and recombin 99.4 1.3E-13 4.5E-18 135.7 6.9 143 346-489 21-200 (231)
86 1tf7_A KAIC; homohexamer, hexa 99.4 3.4E-14 1.2E-18 158.7 2.9 152 331-488 17-209 (525)
87 1cr0_A DNA primase/helicase; R 99.4 4.5E-13 1.5E-17 138.2 10.7 146 342-491 27-237 (296)
88 3b9q_A Chloroplast SRP recepto 99.4 1.2E-13 4E-18 143.7 5.9 122 342-474 92-257 (302)
89 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.1E-12 3.6E-17 129.1 12.3 140 346-488 19-191 (235)
90 2dpy_A FLII, flagellum-specifi 99.4 7.3E-14 2.5E-18 152.4 2.9 157 326-495 131-337 (438)
91 1nlf_A Regulatory protein REPA 99.4 4.7E-13 1.6E-17 137.0 8.6 126 346-476 26-183 (279)
92 2eyu_A Twitching motility prot 99.4 5.3E-14 1.8E-18 143.3 1.0 125 342-487 19-146 (261)
93 3aez_A Pantothenate kinase; tr 99.4 8.8E-15 3E-19 152.9 -6.4 153 325-488 42-244 (312)
94 2og2_A Putative signal recogni 99.3 7.6E-13 2.6E-17 140.5 7.7 122 342-474 149-314 (359)
95 3ec2_A DNA replication protein 99.3 4.1E-13 1.4E-17 128.1 4.7 110 343-474 31-143 (180)
96 2cvh_A DNA repair and recombin 99.3 2.7E-11 9.3E-16 118.3 12.5 140 346-488 16-184 (220)
97 3pih_A Uvrabc system protein A 99.3 1E-11 3.5E-16 145.7 10.8 97 397-494 446-552 (916)
98 2r6f_A Excinuclease ABC subuni 99.2 1.8E-11 6E-16 143.1 11.3 96 398-494 487-592 (972)
99 1z6g_A Guanylate kinase; struc 99.2 2.1E-13 7.2E-18 134.9 -4.8 134 342-482 15-203 (218)
100 2ygr_A Uvrabc system protein A 99.2 2.1E-11 7.3E-16 142.9 10.7 95 399-494 505-609 (993)
101 2vf7_A UVRA2, excinuclease ABC 99.2 2.9E-11 9.9E-16 140.8 11.6 96 398-494 362-467 (842)
102 3sop_A Neuronal-specific septi 99.2 1.2E-12 4.2E-17 133.8 -0.1 114 353-475 4-151 (270)
103 3jvv_A Twitching mobility prot 99.2 3.6E-12 1.2E-16 135.4 3.0 124 346-487 119-244 (356)
104 2jeo_A Uridine-cytidine kinase 99.2 3.7E-12 1.3E-16 127.9 2.3 122 342-478 17-170 (245)
105 2i3b_A HCR-ntpase, human cance 99.2 4.5E-12 1.6E-16 122.8 1.7 131 352-492 2-166 (189)
106 3asz_A Uridine kinase; cytidin 99.2 6.3E-14 2.1E-18 137.0 -12.2 124 347-474 3-161 (211)
107 1pzn_A RAD51, DNA repair and r 99.1 8.2E-11 2.8E-15 124.6 10.3 131 344-475 125-287 (349)
108 1n0w_A DNA repair protein RAD5 99.1 2.7E-10 9.3E-15 112.9 10.5 129 346-475 20-175 (243)
109 2kjq_A DNAA-related protein; s 99.1 1.6E-10 5.5E-15 107.5 7.5 85 349-473 35-124 (149)
110 1pui_A ENGB, probable GTP-bind 99.0 1.2E-10 4.2E-15 112.8 5.3 132 327-460 4-197 (210)
111 2qnr_A Septin-2, protein NEDD5 99.0 1.5E-11 5.1E-16 127.7 -1.4 128 330-475 2-168 (301)
112 3kta_B Chromosome segregation 99.0 8.4E-10 2.9E-14 105.3 9.7 77 408-486 58-139 (173)
113 4ad8_A DNA repair protein RECN 99.0 3.9E-10 1.3E-14 125.6 7.6 79 409-489 391-473 (517)
114 1lw7_A Transcriptional regulat 99.0 5.2E-11 1.8E-15 126.7 0.3 143 342-485 160-340 (365)
115 2qag_C Septin-7; cell cycle, c 99.0 1.6E-10 5.4E-15 125.1 4.0 130 325-475 10-178 (418)
116 2ewv_A Twitching motility prot 99.0 1E-10 3.5E-15 125.0 2.1 122 346-486 132-256 (372)
117 3szr_A Interferon-induced GTP- 99.0 1.4E-10 4.8E-15 131.6 2.8 48 429-476 144-198 (608)
118 1rj9_A FTSY, signal recognitio 98.8 8.6E-10 2.9E-14 114.6 2.9 117 349-476 101-260 (304)
119 1s96_A Guanylate kinase, GMP k 98.8 3.6E-09 1.2E-13 104.7 6.8 118 345-476 11-142 (219)
120 1htw_A HI0065; nucleotide-bind 98.8 3.8E-10 1.3E-14 106.1 -0.3 55 329-393 10-66 (158)
121 2qag_B Septin-6, protein NEDD5 98.8 3.5E-09 1.2E-13 114.5 6.5 146 327-474 17-219 (427)
122 1w1w_A Structural maintenance 98.8 1.2E-08 4.1E-13 110.9 9.7 78 409-487 328-410 (430)
123 3auy_A DNA double-strand break 98.8 1.2E-08 4.2E-13 108.7 9.0 76 410-487 276-359 (371)
124 3lda_A DNA repair protein RAD5 98.7 1.7E-08 5.8E-13 108.6 9.7 128 346-474 174-328 (400)
125 1sxj_E Activator 1 40 kDa subu 98.7 1.8E-08 6E-13 105.8 9.2 44 429-475 132-175 (354)
126 2px0_A Flagellar biosynthesis 98.7 1.1E-07 3.8E-12 98.3 12.8 134 349-494 104-247 (296)
127 2gza_A Type IV secretion syste 98.7 3.6E-09 1.2E-13 112.5 1.5 124 342-487 167-300 (361)
128 2o5v_A DNA replication and rep 98.7 2.5E-08 8.6E-13 105.8 7.5 79 409-494 259-348 (359)
129 2dr3_A UPF0273 protein PH0284; 98.6 3.3E-07 1.1E-11 90.6 11.9 58 430-487 127-195 (247)
130 2zr9_A Protein RECA, recombina 98.5 5.4E-07 1.8E-11 95.3 12.9 122 347-475 58-199 (349)
131 2bbw_A Adenylate kinase 4, AK4 98.5 1E-08 3.6E-13 102.6 -0.3 30 429-458 162-195 (246)
132 1ls1_A Signal recognition part 98.5 3.6E-07 1.2E-11 94.4 10.5 132 330-471 80-219 (295)
133 1udx_A The GTP-binding protein 98.4 2.2E-08 7.7E-13 108.2 -1.2 131 342-481 149-317 (416)
134 3e70_C DPA, signal recognition 98.4 4.1E-07 1.4E-11 95.3 8.0 28 347-375 126-154 (328)
135 1zp6_A Hypothetical protein AT 98.4 4.1E-08 1.4E-12 93.7 0.3 25 346-371 5-29 (191)
136 1vma_A Cell division protein F 98.4 1.2E-06 4.2E-11 90.9 11.3 94 342-442 96-197 (306)
137 2bdt_A BH3686; alpha-beta prot 98.4 4.2E-09 1.5E-13 100.8 -7.3 49 442-494 126-176 (189)
138 2yhs_A FTSY, cell division pro 98.3 1E-06 3.6E-11 96.5 9.3 33 342-375 285-318 (503)
139 1odf_A YGR205W, hypothetical 3 98.3 1.4E-07 4.8E-12 97.2 1.8 98 349-448 30-169 (290)
140 1nij_A Hypothetical protein YJ 98.3 4E-07 1.4E-11 94.9 4.2 49 413-474 140-189 (318)
141 3hr8_A Protein RECA; alpha and 98.2 1.2E-05 4E-10 85.1 13.5 121 347-473 58-197 (356)
142 3lnc_A Guanylate kinase, GMP k 98.1 8.8E-07 3E-11 87.5 3.3 29 342-371 19-47 (231)
143 1sq5_A Pantothenate kinase; P- 98.1 1.9E-07 6.5E-12 96.9 -2.0 45 325-371 36-100 (308)
144 2r6a_A DNAB helicase, replicat 98.1 9.5E-06 3.3E-10 88.6 11.2 125 345-472 198-362 (454)
145 2qm8_A GTPase/ATPase; G protei 98.1 2.5E-07 8.6E-12 97.3 -1.4 47 327-374 30-79 (337)
146 1fnn_A CDC6P, cell division co 98.0 1.1E-05 3.8E-10 84.9 9.7 119 353-477 46-172 (389)
147 3tr0_A Guanylate kinase, GMP k 98.0 2.1E-06 7.3E-11 82.5 3.7 30 344-374 1-31 (205)
148 2xau_A PRE-mRNA-splicing facto 98.0 3.6E-06 1.2E-10 98.0 5.7 133 347-482 106-261 (773)
149 3euj_A Chromosome partition pr 97.9 4.3E-06 1.5E-10 91.8 4.6 38 342-389 22-59 (483)
150 2ce7_A Cell division protein F 97.9 2.3E-05 7.8E-10 86.1 9.7 108 342-475 43-165 (476)
151 3nwj_A ATSK2; P loop, shikimat 97.9 1.9E-06 6.4E-11 86.8 0.8 45 326-371 17-68 (250)
152 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 2.6E-07 9E-12 99.0 -7.7 59 431-492 139-203 (392)
153 1v5w_A DMC1, meiotic recombina 97.8 4.8E-05 1.6E-09 80.0 9.2 128 347-475 119-275 (343)
154 2e87_A Hypothetical protein PH 97.8 1.4E-05 4.8E-10 84.4 4.8 114 352-475 168-293 (357)
155 1qhl_A Protein (cell division 97.7 1.6E-06 5.4E-11 86.1 -3.1 49 326-389 9-57 (227)
156 2rcn_A Probable GTPase ENGC; Y 97.7 1.3E-05 4.4E-10 84.8 3.4 102 342-462 208-346 (358)
157 2z4s_A Chromosomal replication 97.7 1.9E-05 6.5E-10 85.9 4.7 102 352-474 131-237 (440)
158 1p9r_A General secretion pathw 97.7 5.2E-06 1.8E-10 89.7 0.0 43 326-371 143-187 (418)
159 3c8u_A Fructokinase; YP_612366 97.7 1.8E-05 6.3E-10 76.7 3.8 28 347-375 19-47 (208)
160 1lvg_A Guanylate kinase, GMP k 97.7 1.2E-05 4E-10 77.8 2.3 26 348-374 2-28 (198)
161 3kta_A Chromosome segregation 97.7 2.4E-05 8.2E-10 73.8 4.5 28 342-371 19-46 (182)
162 2z43_A DNA repair and recombin 97.7 6.4E-05 2.2E-09 78.3 8.0 127 347-474 104-258 (324)
163 3kl4_A SRP54, signal recogniti 97.7 0.00013 4.5E-09 78.9 10.3 118 349-473 96-223 (433)
164 3a00_A Guanylate kinase, GMP k 97.6 1.7E-05 5.7E-10 75.6 2.6 23 352-374 2-25 (186)
165 3uie_A Adenylyl-sulfate kinase 97.6 1.9E-05 6.6E-10 76.0 2.9 40 331-371 4-45 (200)
166 2j41_A Guanylate kinase; GMP, 97.6 2.2E-05 7.7E-10 75.3 3.2 26 345-371 1-26 (207)
167 3k1j_A LON protease, ATP-depen 97.6 3.1E-06 1.1E-10 95.8 -3.5 39 332-371 40-80 (604)
168 2qby_A CDC6 homolog 1, cell di 97.6 1.6E-05 5.5E-10 83.3 2.0 120 352-476 46-175 (386)
169 1u94_A RECA protein, recombina 97.6 0.00037 1.3E-08 73.6 12.4 121 347-474 60-200 (356)
170 2w58_A DNAI, primosome compone 97.5 2.8E-05 9.6E-10 74.6 2.7 20 352-371 55-74 (202)
171 1in4_A RUVB, holliday junction 97.5 1.7E-05 6E-10 82.9 1.3 45 327-371 19-71 (334)
172 1zu4_A FTSY; GTPase, signal re 97.5 0.00062 2.1E-08 70.8 13.0 29 342-371 97-125 (320)
173 2ius_A DNA translocase FTSK; n 97.5 2.3E-05 7.8E-10 86.6 2.2 29 342-371 159-187 (512)
174 4a1f_A DNAB helicase, replicat 97.5 0.00012 3.9E-09 76.9 7.4 116 346-473 42-165 (338)
175 1w1w_A Structural maintenance 97.5 4.7E-05 1.6E-09 82.4 3.9 41 326-371 6-46 (430)
176 2x8a_A Nuclear valosin-contain 97.5 0.00021 7.3E-09 72.6 8.4 27 342-371 38-64 (274)
177 2oap_1 GSPE-2, type II secreti 97.4 3.6E-05 1.2E-09 85.3 1.8 38 342-388 252-289 (511)
178 4eun_A Thermoresistant glucoki 97.4 7.6E-05 2.6E-09 71.8 3.7 27 344-371 23-49 (200)
179 1kgd_A CASK, peripheral plasma 97.4 7.2E-05 2.5E-09 70.8 3.4 22 349-371 4-25 (180)
180 3pxg_A Negative regulator of g 97.3 0.00074 2.5E-08 73.9 11.3 67 545-611 397-467 (468)
181 2i1q_A DNA repair and recombin 97.3 0.00035 1.2E-08 72.4 8.0 127 347-474 95-259 (322)
182 1u0l_A Probable GTPase ENGC; p 97.3 7.8E-05 2.7E-09 76.9 3.0 36 345-389 164-199 (301)
183 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00016 5.3E-09 66.7 4.7 27 344-372 18-44 (149)
184 3m6a_A ATP-dependent protease 97.3 2.4E-05 8.1E-10 87.5 -1.3 40 330-371 87-128 (543)
185 4e22_A Cytidylate kinase; P-lo 97.3 7.7E-05 2.6E-09 74.8 2.3 35 348-388 25-59 (252)
186 2o5v_A DNA replication and rep 97.3 0.00016 5.4E-09 76.6 4.7 29 342-372 19-47 (359)
187 1l8q_A Chromosomal replication 97.3 0.00046 1.6E-08 71.3 8.0 43 430-473 97-140 (324)
188 3b9p_A CG5977-PA, isoform A; A 97.3 0.00072 2.4E-08 68.7 9.3 20 352-371 55-74 (297)
189 3bos_A Putative DNA replicatio 97.3 7.7E-05 2.6E-09 72.7 1.8 22 349-371 51-72 (242)
190 3tau_A Guanylate kinase, GMP k 97.2 0.00013 4.3E-09 70.8 3.3 23 348-371 6-28 (208)
191 3vaa_A Shikimate kinase, SK; s 97.2 0.00014 4.6E-09 70.0 3.4 29 342-371 17-45 (199)
192 3llm_A ATP-dependent RNA helic 97.2 0.0005 1.7E-08 67.8 7.2 131 347-480 73-227 (235)
193 1t9h_A YLOQ, probable GTPase E 97.2 7.6E-05 2.6E-09 77.3 1.0 35 345-388 168-202 (307)
194 1njg_A DNA polymerase III subu 97.2 0.0017 5.8E-08 62.4 10.3 20 352-371 46-65 (250)
195 2yv5_A YJEQ protein; hydrolase 97.1 0.00021 7E-09 73.8 3.7 34 346-389 161-194 (302)
196 1sxj_C Activator 1 40 kDa subu 97.1 0.00027 9.2E-09 73.7 4.6 39 332-371 24-66 (340)
197 3bh0_A DNAB-like replicative h 97.1 0.00077 2.6E-08 69.8 7.7 121 346-474 64-191 (315)
198 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00071 2.4E-08 70.3 7.3 106 346-473 119-235 (331)
199 1ixz_A ATP-dependent metallopr 97.1 7.9E-05 2.7E-09 74.3 0.1 41 328-371 27-69 (254)
200 2vp4_A Deoxynucleoside kinase; 97.1 0.00019 6.3E-09 70.8 2.7 25 346-371 16-40 (230)
201 3tqc_A Pantothenate kinase; bi 97.1 7.2E-05 2.5E-09 77.9 -0.4 19 353-371 94-112 (321)
202 1xp8_A RECA protein, recombina 97.1 0.0046 1.6E-07 65.5 13.5 120 347-474 71-211 (366)
203 3cf0_A Transitional endoplasmi 97.1 0.00078 2.7E-08 69.1 7.4 25 346-371 45-69 (301)
204 1qvr_A CLPB protein; coiled co 97.1 0.0034 1.2E-07 73.7 13.7 20 352-371 192-211 (854)
205 3qks_A DNA double-strand break 97.1 0.0004 1.4E-08 67.3 4.7 27 343-371 17-43 (203)
206 1iy2_A ATP-dependent metallopr 97.0 9.7E-05 3.3E-09 74.8 0.0 41 328-371 51-93 (278)
207 1knq_A Gluconate kinase; ALFA/ 97.0 0.00032 1.1E-08 65.5 3.6 23 348-371 6-28 (175)
208 2qgz_A Helicase loader, putati 97.0 0.00018 6.3E-09 74.4 2.0 105 352-474 153-258 (308)
209 1rz3_A Hypothetical protein rb 97.0 0.0003 1E-08 67.7 3.0 25 346-371 18-42 (201)
210 1ypw_A Transitional endoplasmi 97.0 0.00087 3E-08 78.3 7.3 27 344-371 232-258 (806)
211 3ney_A 55 kDa erythrocyte memb 97.0 0.00039 1.3E-08 67.3 3.5 25 346-371 15-39 (197)
212 3lxx_A GTPase IMAP family memb 96.9 0.00039 1.3E-08 68.6 3.6 113 352-473 30-155 (239)
213 1kag_A SKI, shikimate kinase I 96.9 0.00031 1.1E-08 65.3 2.7 20 352-371 5-24 (173)
214 2ffh_A Protein (FFH); SRP54, s 96.9 0.0019 6.6E-08 69.7 9.1 38 331-371 81-118 (425)
215 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00085 2.9E-08 74.0 6.2 40 329-371 43-84 (499)
216 1j8m_F SRP54, signal recogniti 96.9 0.0054 1.9E-07 63.0 11.6 39 331-371 79-118 (297)
217 2v1u_A Cell division control p 96.9 0.00096 3.3E-08 69.7 6.0 119 352-475 45-178 (387)
218 1svm_A Large T antigen; AAA+ f 96.8 0.00037 1.3E-08 74.2 2.6 29 342-371 161-189 (377)
219 1lv7_A FTSH; alpha/beta domain 96.8 0.0035 1.2E-07 62.2 9.6 20 352-371 46-65 (257)
220 2dy1_A Elongation factor G; tr 96.7 0.0012 4.1E-08 75.4 6.0 42 429-476 97-138 (665)
221 1ega_A Protein (GTP-binding pr 96.7 0.0048 1.6E-07 63.4 9.7 64 415-483 101-169 (301)
222 2f1r_A Molybdopterin-guanine d 96.7 0.00029 1E-08 66.6 0.4 20 352-371 3-22 (171)
223 2b8t_A Thymidine kinase; deoxy 96.7 0.0013 4.6E-08 64.8 5.0 121 349-485 11-148 (223)
224 2p67_A LAO/AO transport system 96.7 0.00017 5.8E-09 75.7 -1.5 41 330-371 34-76 (341)
225 2qt1_A Nicotinamide riboside k 96.7 0.00082 2.8E-08 64.6 3.4 25 346-371 17-41 (207)
226 3h4m_A Proteasome-activating n 96.7 0.0025 8.5E-08 64.2 7.1 23 348-371 49-71 (285)
227 4eaq_A DTMP kinase, thymidylat 96.6 0.0067 2.3E-07 59.8 9.8 23 348-371 24-46 (229)
228 1sxj_D Activator 1 41 kDa subu 96.6 0.0028 9.6E-08 65.6 7.3 43 430-475 132-174 (353)
229 1jjv_A Dephospho-COA kinase; P 96.6 0.00095 3.3E-08 64.0 3.1 20 352-371 3-22 (206)
230 1oix_A RAS-related protein RAB 96.6 0.0012 4.1E-08 62.6 3.7 20 352-371 30-49 (191)
231 3io5_A Recombination and repai 96.6 0.015 5.1E-07 60.2 12.1 123 347-475 26-173 (333)
232 1y63_A LMAJ004144AAA protein; 96.6 0.0011 3.9E-08 62.6 3.5 29 342-371 2-30 (184)
233 4fcw_A Chaperone protein CLPB; 96.6 0.0021 7.2E-08 65.5 5.7 20 352-371 48-67 (311)
234 2p65_A Hypothetical protein PF 96.5 0.00035 1.2E-08 65.0 -0.4 20 352-371 44-63 (187)
235 3cr8_A Sulfate adenylyltranfer 96.5 0.00078 2.7E-08 75.2 2.2 25 346-371 365-389 (552)
236 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.9E-08 63.3 3.0 19 353-371 3-21 (204)
237 4ad8_A DNA repair protein RECN 96.4 0.00082 2.8E-08 74.5 1.9 31 342-374 53-83 (517)
238 1jbk_A CLPB protein; beta barr 96.4 0.00047 1.6E-08 64.1 -0.2 20 352-371 44-63 (195)
239 1cke_A CK, MSSA, protein (cyti 96.4 0.0014 4.9E-08 63.6 3.2 20 352-371 6-25 (227)
240 3cmw_A Protein RECA, recombina 96.4 0.017 5.7E-07 71.9 13.2 120 347-473 729-868 (1706)
241 2q6t_A DNAB replication FORK h 96.4 0.012 4.1E-07 63.8 10.7 116 347-471 197-317 (444)
242 2pez_A Bifunctional 3'-phospho 96.4 0.0018 6E-08 60.7 3.6 22 349-371 4-25 (179)
243 3auy_A DNA double-strand break 96.4 0.0015 5.1E-08 69.2 3.4 30 342-373 18-47 (371)
244 3t15_A Ribulose bisphosphate c 96.4 0.0059 2E-07 62.4 7.7 20 352-371 37-56 (293)
245 2lw1_A ABC transporter ATP-bin 96.3 0.016 5.4E-07 48.6 8.7 53 542-594 22-84 (89)
246 3dm5_A SRP54, signal recogniti 96.3 0.024 8.3E-07 61.3 12.4 99 352-454 101-206 (443)
247 2f9l_A RAB11B, member RAS onco 96.2 0.0021 7.1E-08 61.1 3.1 19 353-371 7-25 (199)
248 2qor_A Guanylate kinase; phosp 96.2 0.002 6.9E-08 61.9 2.9 24 347-371 9-32 (204)
249 3d8b_A Fidgetin-like protein 1 96.2 0.012 4.2E-07 61.7 9.1 20 352-371 118-137 (357)
250 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.017 5.8E-07 57.0 9.7 20 352-371 40-59 (262)
251 2zts_A Putative uncharacterize 96.2 0.021 7.2E-07 55.7 10.3 46 429-474 133-182 (251)
252 3cmw_A Protein RECA, recombina 96.2 0.027 9.1E-07 70.1 13.2 122 347-474 380-520 (1706)
253 3ice_A Transcription terminati 96.1 0.0022 7.6E-08 68.1 2.7 46 325-371 132-194 (422)
254 2r8r_A Sensor protein; KDPD, P 96.1 0.0016 5.4E-08 64.3 1.5 121 349-477 4-130 (228)
255 2orv_A Thymidine kinase; TP4A 96.1 0.023 7.9E-07 56.1 9.7 126 342-486 11-149 (234)
256 3t61_A Gluconokinase; PSI-biol 95.9 0.003 1E-07 60.4 2.6 20 352-371 19-38 (202)
257 4b4t_L 26S protease subunit RP 95.9 0.037 1.3E-06 59.8 11.4 99 352-475 216-331 (437)
258 3co5_A Putative two-component 95.8 0.019 6.5E-07 51.8 7.6 41 431-473 75-115 (143)
259 2chg_A Replication factor C sm 95.8 0.04 1.4E-06 52.0 10.2 19 353-371 40-58 (226)
260 3cmu_A Protein RECA, recombina 95.8 0.037 1.3E-06 69.7 12.4 119 347-472 1424-1562(2050)
261 2www_A Methylmalonic aciduria 95.8 0.0038 1.3E-07 65.6 3.0 22 349-371 73-94 (349)
262 3cm0_A Adenylate kinase; ATP-b 95.8 0.0047 1.6E-07 57.8 3.2 22 349-371 3-24 (186)
263 2yvu_A Probable adenylyl-sulfa 95.7 0.0058 2E-07 57.5 3.8 23 348-371 11-33 (186)
264 3bgw_A DNAB-like replicative h 95.7 0.021 7.1E-07 62.0 8.6 27 347-374 194-220 (444)
265 3pxi_A Negative regulator of g 95.7 0.08 2.7E-06 61.2 14.0 20 352-371 202-221 (758)
266 1m7g_A Adenylylsulfate kinase; 95.7 0.0048 1.6E-07 59.5 3.1 26 345-371 20-45 (211)
267 3syl_A Protein CBBX; photosynt 95.7 0.034 1.2E-06 56.3 9.6 20 352-371 68-87 (309)
268 1q57_A DNA primase/helicase; d 95.6 0.033 1.1E-06 61.1 9.9 26 347-373 239-264 (503)
269 3cmu_A Protein RECA, recombina 95.6 0.066 2.2E-06 67.6 13.4 121 347-474 380-520 (2050)
270 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.037 1.3E-06 57.2 9.6 20 352-371 46-65 (322)
271 4b4t_K 26S protease regulatory 95.6 0.016 5.5E-07 62.5 7.0 99 352-475 207-322 (428)
272 2qag_A Septin-2, protein NEDD5 95.6 0.0028 9.6E-08 66.9 1.0 39 326-371 17-57 (361)
273 1ypw_A Transitional endoplasmi 95.6 0.0025 8.4E-08 74.5 0.5 28 343-371 504-531 (806)
274 3kb2_A SPBC2 prophage-derived 95.5 0.0061 2.1E-07 56.0 3.1 20 352-371 2-21 (173)
275 3n70_A Transport activator; si 95.5 0.018 6.1E-07 52.1 6.1 20 352-371 25-44 (145)
276 3lw7_A Adenylate kinase relate 95.4 0.008 2.7E-07 55.0 3.2 20 352-371 2-21 (179)
277 1q3t_A Cytidylate kinase; nucl 95.3 0.0082 2.8E-07 59.0 3.4 23 348-371 14-36 (236)
278 1jr3_A DNA polymerase III subu 95.3 0.032 1.1E-06 58.0 8.0 20 352-371 39-58 (373)
279 3pfi_A Holliday junction ATP-d 95.3 0.04 1.4E-06 56.7 8.7 20 352-371 56-75 (338)
280 2wji_A Ferrous iron transport 95.3 0.0084 2.9E-07 55.0 3.1 20 352-371 4-23 (165)
281 4b4t_J 26S protease regulatory 95.3 0.037 1.3E-06 59.1 8.4 99 352-475 183-298 (405)
282 1np6_A Molybdopterin-guanine d 95.3 0.0087 3E-07 56.5 3.2 20 352-371 7-26 (174)
283 4b4t_M 26S protease regulatory 95.3 0.036 1.2E-06 59.8 8.4 20 352-371 216-235 (434)
284 1ex7_A Guanylate kinase; subst 95.3 0.0073 2.5E-07 57.7 2.6 20 352-371 2-21 (186)
285 1hqc_A RUVB; extended AAA-ATPa 95.2 0.046 1.6E-06 55.7 8.7 20 352-371 39-58 (324)
286 2gj8_A MNME, tRNA modification 95.2 0.0095 3.2E-07 55.3 3.2 22 349-371 3-24 (172)
287 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.7E-07 57.1 3.6 20 352-371 5-24 (218)
288 1qhx_A CPT, protein (chloramph 95.2 0.01 3.6E-07 55.0 3.3 20 352-371 4-23 (178)
289 2rhm_A Putative kinase; P-loop 95.1 0.011 3.8E-07 55.5 3.4 22 349-371 4-25 (193)
290 1xx6_A Thymidine kinase; NESG, 95.1 0.025 8.6E-07 54.2 5.9 121 349-486 7-141 (191)
291 1w5s_A Origin recognition comp 95.1 0.023 7.7E-07 59.9 6.1 20 352-371 51-72 (412)
292 2ze6_A Isopentenyl transferase 95.0 0.011 3.9E-07 58.9 3.4 20 352-371 2-21 (253)
293 1kht_A Adenylate kinase; phosp 95.0 0.012 4E-07 55.0 3.3 20 352-371 4-23 (192)
294 1ly1_A Polynucleotide kinase; 95.0 0.013 4.4E-07 54.2 3.4 20 352-371 3-22 (181)
295 2wjg_A FEOB, ferrous iron tran 95.0 0.012 4.1E-07 54.7 3.1 20 352-371 8-27 (188)
296 3hu3_A Transitional endoplasmi 94.9 0.034 1.2E-06 61.0 7.1 20 352-371 239-258 (489)
297 2p5t_B PEZT; postsegregational 94.9 0.01 3.4E-07 59.1 2.6 25 346-371 28-52 (253)
298 4b4t_H 26S protease regulatory 94.9 0.061 2.1E-06 58.3 8.8 99 352-475 244-359 (467)
299 2qp9_X Vacuolar protein sortin 94.9 0.054 1.8E-06 56.8 8.2 20 352-371 85-104 (355)
300 1d2n_A N-ethylmaleimide-sensit 94.9 0.035 1.2E-06 55.5 6.5 20 352-371 65-84 (272)
301 1via_A Shikimate kinase; struc 94.8 0.011 3.9E-07 54.9 2.6 19 353-371 6-24 (175)
302 2jaq_A Deoxyguanosine kinase; 94.8 0.014 4.9E-07 55.1 3.2 19 353-371 2-20 (205)
303 3iij_A Coilin-interacting nucl 94.8 0.013 4.3E-07 54.8 2.7 22 349-371 10-31 (180)
304 1gvn_B Zeta; postsegregational 94.7 0.015 5E-07 59.3 3.3 22 349-371 32-53 (287)
305 2zej_A Dardarin, leucine-rich 94.7 0.016 5.5E-07 54.1 3.2 19 353-371 4-22 (184)
306 2bjv_A PSP operon transcriptio 94.6 0.011 3.7E-07 58.9 2.1 20 352-371 30-49 (265)
307 2j9r_A Thymidine kinase; TK1, 94.6 0.086 2.9E-06 51.4 8.2 122 348-486 26-161 (214)
308 4b4t_I 26S protease regulatory 94.6 0.082 2.8E-06 56.8 8.8 100 352-476 217-333 (437)
309 3u61_B DNA polymerase accessor 94.6 0.084 2.9E-06 54.0 8.7 20 352-371 49-68 (324)
310 2ga8_A Hypothetical 39.9 kDa p 94.5 0.013 4.6E-07 61.5 2.3 29 342-371 14-44 (359)
311 1sxj_A Activator 1 95 kDa subu 94.5 0.036 1.2E-06 61.2 5.9 20 352-371 78-97 (516)
312 2v54_A DTMP kinase, thymidylat 94.5 0.021 7.2E-07 54.1 3.5 22 349-371 3-24 (204)
313 1uf9_A TT1252 protein; P-loop, 94.5 0.02 6.9E-07 54.1 3.4 20 352-371 9-28 (203)
314 3pvs_A Replication-associated 94.5 0.027 9.1E-07 61.2 4.7 19 353-371 52-70 (447)
315 1gtv_A TMK, thymidylate kinase 94.4 0.0093 3.2E-07 57.1 0.9 19 353-371 2-20 (214)
316 3eie_A Vacuolar protein sortin 94.4 0.085 2.9E-06 54.2 8.2 20 352-371 52-71 (322)
317 2zan_A Vacuolar protein sortin 94.4 0.061 2.1E-06 58.2 7.4 20 352-371 168-187 (444)
318 3r20_A Cytidylate kinase; stru 94.4 0.02 6.8E-07 56.7 3.2 20 352-371 10-29 (233)
319 1ojl_A Transcriptional regulat 94.4 0.013 4.3E-07 60.3 1.8 20 352-371 26-45 (304)
320 1iqp_A RFCS; clamp loader, ext 94.4 0.042 1.4E-06 55.8 5.7 19 353-371 48-66 (327)
321 1tev_A UMP-CMP kinase; ploop, 94.3 0.023 8E-07 53.1 3.5 20 352-371 4-23 (196)
322 3t34_A Dynamin-related protein 94.3 0.021 7E-07 60.0 3.4 26 342-371 29-54 (360)
323 2plr_A DTMP kinase, probable t 94.3 0.024 8.3E-07 53.8 3.6 22 349-371 3-24 (213)
324 3vfd_A Spastin; ATPase, microt 94.3 0.15 5E-06 53.9 10.0 20 352-371 149-168 (389)
325 2z0h_A DTMP kinase, thymidylat 94.3 0.022 7.4E-07 53.6 3.1 19 353-371 2-20 (197)
326 2c95_A Adenylate kinase 1; tra 94.2 0.024 8.2E-07 53.2 3.2 22 349-371 8-29 (196)
327 1nks_A Adenylate kinase; therm 94.2 0.024 8E-07 52.9 3.1 20 352-371 2-21 (194)
328 3ake_A Cytidylate kinase; CMP 94.2 0.023 8E-07 53.8 3.1 19 353-371 4-22 (208)
329 2vli_A Antibiotic resistance p 94.0 0.021 7.4E-07 53.0 2.5 20 352-371 6-25 (183)
330 2wwf_A Thymidilate kinase, put 94.0 0.027 9.2E-07 53.7 3.3 22 349-371 9-30 (212)
331 1nn5_A Similar to deoxythymidy 94.0 0.026 9E-07 53.8 3.2 23 348-371 7-29 (215)
332 3trf_A Shikimate kinase, SK; a 94.0 0.029 9.8E-07 52.4 3.2 20 352-371 6-25 (185)
333 2ohf_A Protein OLA1, GTP-bindi 93.9 0.055 1.9E-06 57.7 5.7 25 346-371 18-42 (396)
334 1xjc_A MOBB protein homolog; s 93.9 0.029 1E-06 52.7 3.2 20 352-371 5-24 (169)
335 2a5y_B CED-4; apoptosis; HET: 93.8 0.21 7.2E-06 55.3 10.4 118 351-479 152-280 (549)
336 1qf9_A UMP/CMP kinase, protein 93.6 0.04 1.4E-06 51.4 3.5 20 352-371 7-26 (194)
337 2bwj_A Adenylate kinase 5; pho 93.6 0.025 8.7E-07 53.2 2.1 23 348-371 10-32 (199)
338 3fb4_A Adenylate kinase; psych 93.6 0.035 1.2E-06 53.3 3.1 19 353-371 2-20 (216)
339 2pbr_A DTMP kinase, thymidylat 93.6 0.036 1.2E-06 51.8 3.1 19 353-371 2-20 (195)
340 1g5t_A COB(I)alamin adenosyltr 93.5 0.22 7.4E-06 47.8 8.5 63 422-488 109-179 (196)
341 1f6b_A SAR1; gtpases, N-termin 93.5 0.024 8.2E-07 53.7 1.8 28 342-371 18-45 (198)
342 1m2o_B GTP-binding protein SAR 93.5 0.037 1.2E-06 52.0 3.0 28 342-371 16-43 (190)
343 3cf2_A TER ATPase, transitiona 93.5 0.094 3.2E-06 60.9 7.0 20 352-371 239-258 (806)
344 2qtf_A Protein HFLX, GTP-bindi 93.4 0.036 1.2E-06 58.5 3.1 22 350-371 178-199 (364)
345 1e6c_A Shikimate kinase; phosp 93.4 0.034 1.2E-06 51.1 2.6 20 352-371 3-22 (173)
346 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.043 1.5E-06 54.7 3.6 20 352-371 5-24 (260)
347 2pt5_A Shikimate kinase, SK; a 93.4 0.042 1.4E-06 50.3 3.2 19 353-371 2-20 (168)
348 3dl0_A Adenylate kinase; phosp 93.3 0.041 1.4E-06 52.8 3.1 19 353-371 2-20 (216)
349 1ukz_A Uridylate kinase; trans 93.2 0.049 1.7E-06 51.6 3.6 20 352-371 16-35 (203)
350 3k53_A Ferrous iron transport 93.1 0.043 1.5E-06 55.0 3.1 20 352-371 4-23 (271)
351 1zd8_A GTP:AMP phosphotransfer 93.1 0.045 1.6E-06 53.1 3.1 20 352-371 8-27 (227)
352 3dz8_A RAS-related protein RAB 93.0 0.022 7.6E-07 53.3 0.8 19 353-371 25-43 (191)
353 1a7j_A Phosphoribulokinase; tr 93.0 0.031 1.1E-06 57.0 1.9 20 352-371 6-25 (290)
354 1mky_A Probable GTP-binding pr 93.0 0.045 1.5E-06 59.0 3.3 20 352-371 181-200 (439)
355 2v3c_C SRP54, signal recogniti 92.9 0.14 4.9E-06 55.2 7.0 21 352-372 100-120 (432)
356 1aky_A Adenylate kinase; ATP:A 92.9 0.055 1.9E-06 52.2 3.4 20 352-371 5-24 (220)
357 2xb4_A Adenylate kinase; ATP-b 92.9 0.052 1.8E-06 52.7 3.2 19 353-371 2-20 (223)
358 1qvr_A CLPB protein; coiled co 92.8 0.026 9E-07 66.2 1.2 21 352-372 589-609 (854)
359 2cdn_A Adenylate kinase; phosp 92.8 0.061 2.1E-06 51.0 3.5 20 352-371 21-40 (201)
360 2grj_A Dephospho-COA kinase; T 92.7 0.057 1.9E-06 51.6 3.1 20 352-371 13-32 (192)
361 1zak_A Adenylate kinase; ATP:A 92.7 0.048 1.6E-06 52.7 2.6 20 352-371 6-25 (222)
362 2ged_A SR-beta, signal recogni 92.7 0.059 2E-06 50.2 3.2 20 352-371 49-68 (193)
363 1w36_D RECD, exodeoxyribonucle 92.6 0.12 4.2E-06 58.2 6.2 22 349-371 163-184 (608)
364 1fzq_A ADP-ribosylation factor 92.6 0.058 2E-06 50.1 2.9 20 352-371 17-36 (181)
365 1zuh_A Shikimate kinase; alpha 92.5 0.064 2.2E-06 49.2 3.2 20 352-371 8-27 (168)
366 1uj2_A Uridine-cytidine kinase 92.5 0.059 2E-06 53.3 3.1 20 352-371 23-42 (252)
367 1sxj_B Activator 1 37 kDa subu 92.5 0.37 1.3E-05 48.5 9.1 18 354-371 45-62 (323)
368 4ag6_A VIRB4 ATPase, type IV s 92.5 0.055 1.9E-06 57.3 2.9 20 352-371 36-55 (392)
369 2dby_A GTP-binding protein; GD 92.4 0.069 2.4E-06 56.4 3.6 19 353-371 3-21 (368)
370 2iyv_A Shikimate kinase, SK; t 92.4 0.05 1.7E-06 50.7 2.3 20 352-371 3-22 (184)
371 3tw8_B RAS-related protein RAB 92.4 0.09 3.1E-06 47.9 4.0 20 352-371 10-29 (181)
372 2f6r_A COA synthase, bifunctio 92.4 0.06 2E-06 54.5 3.0 22 351-372 75-96 (281)
373 2erx_A GTP-binding protein DI- 92.3 0.1 3.6E-06 46.9 4.3 19 353-371 5-23 (172)
374 1z2a_A RAS-related protein RAB 92.3 0.066 2.3E-06 48.2 2.9 19 353-371 7-25 (168)
375 1moz_A ARL1, ADP-ribosylation 92.3 0.048 1.6E-06 50.2 1.9 20 352-371 19-38 (183)
376 3te6_A Regulatory protein SIR3 92.2 0.29 9.8E-06 50.6 7.9 116 349-475 44-174 (318)
377 1z08_A RAS-related protein RAB 92.2 0.092 3.1E-06 47.4 3.7 19 353-371 8-26 (170)
378 2dyk_A GTP-binding protein; GT 92.2 0.082 2.8E-06 47.3 3.4 19 353-371 3-21 (161)
379 1ltq_A Polynucleotide kinase; 92.2 0.074 2.5E-06 53.8 3.4 20 352-371 3-22 (301)
380 1z0j_A RAB-22, RAS-related pro 92.1 0.094 3.2E-06 47.3 3.7 19 353-371 8-26 (170)
381 4edh_A DTMP kinase, thymidylat 92.1 0.085 2.9E-06 51.3 3.5 22 349-371 5-26 (213)
382 3tlx_A Adenylate kinase 2; str 92.1 0.086 3E-06 52.0 3.6 22 349-371 28-49 (243)
383 1kao_A RAP2A; GTP-binding prot 92.1 0.075 2.6E-06 47.6 2.9 19 353-371 5-23 (167)
384 2yc2_C IFT27, small RAB-relate 92.0 0.071 2.4E-06 50.0 2.9 20 352-371 21-40 (208)
385 2ce2_X GTPase HRAS; signaling 92.0 0.077 2.6E-06 47.4 2.9 19 353-371 5-23 (166)
386 1e4v_A Adenylate kinase; trans 92.0 0.073 2.5E-06 51.1 2.9 19 353-371 2-20 (214)
387 2lkc_A Translation initiation 92.0 0.12 4.2E-06 47.0 4.4 20 352-371 9-28 (178)
388 1u8z_A RAS-related protein RAL 91.9 0.078 2.7E-06 47.5 2.9 19 353-371 6-24 (168)
389 1w4r_A Thymidine kinase; type 91.9 0.095 3.2E-06 50.3 3.6 107 349-476 19-129 (195)
390 1ek0_A Protein (GTP-binding pr 91.9 0.078 2.7E-06 47.7 2.9 19 353-371 5-23 (170)
391 1ky3_A GTP-binding protein YPT 91.9 0.08 2.7E-06 48.3 2.9 20 352-371 9-28 (182)
392 2orw_A Thymidine kinase; TMTK, 91.8 0.084 2.9E-06 49.9 3.1 21 350-371 3-23 (184)
393 1wms_A RAB-9, RAB9, RAS-relate 91.8 0.083 2.8E-06 48.2 2.9 19 353-371 9-27 (177)
394 3q72_A GTP-binding protein RAD 91.8 0.076 2.6E-06 47.8 2.7 19 353-371 4-22 (166)
395 1c1y_A RAS-related protein RAP 91.7 0.084 2.9E-06 47.4 2.9 19 353-371 5-23 (167)
396 3q85_A GTP-binding protein REM 91.7 0.084 2.9E-06 47.7 2.9 19 353-371 4-22 (169)
397 2nzj_A GTP-binding protein REM 91.7 0.085 2.9E-06 47.9 2.9 19 353-371 6-24 (175)
398 3v9p_A DTMP kinase, thymidylat 91.6 0.076 2.6E-06 52.2 2.6 23 348-371 23-45 (227)
399 2iut_A DNA translocase FTSK; n 91.6 0.07 2.4E-06 59.4 2.5 29 342-371 206-234 (574)
400 1g16_A RAS-related protein SEC 91.6 0.083 2.8E-06 47.6 2.7 19 353-371 5-23 (170)
401 3b1v_A Ferrous iron uptake tra 91.5 0.097 3.3E-06 52.8 3.3 20 352-371 4-23 (272)
402 3t1o_A Gliding protein MGLA; G 91.5 0.085 2.9E-06 48.9 2.7 20 352-371 15-34 (198)
403 1upt_A ARL1, ADP-ribosylation 91.5 0.1 3.4E-06 47.2 3.1 20 352-371 8-27 (171)
404 2cxx_A Probable GTP-binding pr 91.4 0.12 4.2E-06 47.6 3.7 19 353-371 3-21 (190)
405 1svi_A GTP-binding protein YSX 91.3 0.091 3.1E-06 48.9 2.7 20 352-371 24-43 (195)
406 3lv8_A DTMP kinase, thymidylat 91.3 0.1 3.5E-06 51.6 3.1 22 349-371 26-47 (236)
407 3pqc_A Probable GTP-binding pr 91.3 0.092 3.2E-06 48.6 2.7 20 352-371 24-43 (195)
408 4dsu_A GTPase KRAS, isoform 2B 91.2 0.1 3.5E-06 48.0 2.9 19 353-371 6-24 (189)
409 4tmk_A Protein (thymidylate ki 91.2 0.11 3.7E-06 50.5 3.2 22 349-371 2-23 (213)
410 1r2q_A RAS-related protein RAB 91.2 0.1 3.6E-06 46.8 2.9 19 353-371 8-26 (170)
411 2fn4_A P23, RAS-related protei 91.1 0.098 3.4E-06 47.7 2.7 20 352-371 10-29 (181)
412 4dcu_A GTP-binding protein ENG 91.1 0.12 4E-06 56.0 3.7 20 352-371 24-43 (456)
413 3ihw_A Centg3; RAS, centaurin, 91.0 0.11 3.7E-06 48.5 2.9 20 352-371 21-40 (184)
414 1r8s_A ADP-ribosylation factor 91.0 0.11 3.8E-06 46.6 2.9 19 353-371 2-20 (164)
415 3zvl_A Bifunctional polynucleo 91.0 0.12 4E-06 55.5 3.5 20 352-371 259-278 (416)
416 3clv_A RAB5 protein, putative; 91.0 0.14 4.9E-06 47.3 3.7 20 352-371 8-27 (208)
417 3umf_A Adenylate kinase; rossm 90.9 0.13 4.5E-06 50.1 3.6 25 346-371 25-49 (217)
418 2y8e_A RAB-protein 6, GH09086P 90.9 0.1 3.5E-06 47.4 2.7 19 353-371 16-34 (179)
419 3bc1_A RAS-related protein RAB 90.9 0.11 3.8E-06 47.8 2.9 20 352-371 12-31 (195)
420 2oil_A CATX-8, RAS-related pro 90.9 0.11 3.8E-06 48.3 2.9 19 353-371 27-45 (193)
421 2a9k_A RAS-related protein RAL 90.9 0.11 3.9E-06 47.5 2.9 20 352-371 19-38 (187)
422 3be4_A Adenylate kinase; malar 90.9 0.12 4.1E-06 49.8 3.1 20 352-371 6-25 (217)
423 3d3q_A TRNA delta(2)-isopenten 90.9 0.12 4.1E-06 53.9 3.3 20 352-371 8-27 (340)
424 1z0f_A RAB14, member RAS oncog 90.8 0.12 4E-06 47.1 2.9 20 352-371 16-35 (179)
425 2hxs_A RAB-26, RAS-related pro 90.8 0.12 4.1E-06 47.1 2.9 19 353-371 8-26 (178)
426 1z6t_A APAF-1, apoptotic prote 90.6 0.7 2.4E-05 51.2 9.6 21 351-371 147-167 (591)
427 2bme_A RAB4A, RAS-related prot 90.6 0.12 4E-06 47.7 2.7 20 352-371 11-30 (186)
428 2efe_B Small GTP-binding prote 90.6 0.13 4.4E-06 47.0 2.9 19 353-371 14-32 (181)
429 1nrj_B SR-beta, signal recogni 90.6 0.13 4.5E-06 48.9 3.1 20 352-371 13-32 (218)
430 3exa_A TRNA delta(2)-isopenten 90.6 0.15 5E-06 52.7 3.6 20 352-371 4-23 (322)
431 3con_A GTPase NRAS; structural 90.5 0.14 4.7E-06 47.5 3.1 20 352-371 22-41 (190)
432 3kkq_A RAS-related protein M-R 90.5 0.14 4.7E-06 47.1 3.1 20 352-371 19-38 (183)
433 2ocp_A DGK, deoxyguanosine kin 90.5 0.14 4.8E-06 50.1 3.4 20 352-371 3-22 (241)
434 2g6b_A RAS-related protein RAB 90.5 0.13 4.4E-06 46.9 2.9 20 352-371 11-30 (180)
435 3tkl_A RAS-related protein RAB 90.5 0.17 5.8E-06 47.0 3.7 20 352-371 17-36 (196)
436 1m7b_A RND3/RHOE small GTP-bin 90.5 0.12 4.1E-06 47.8 2.7 20 352-371 8-27 (184)
437 2bov_A RAla, RAS-related prote 90.4 0.13 4.4E-06 48.2 2.9 20 352-371 15-34 (206)
438 3ld9_A DTMP kinase, thymidylat 90.4 0.16 5.5E-06 49.8 3.6 23 348-371 19-41 (223)
439 3crm_A TRNA delta(2)-isopenten 90.4 0.14 4.9E-06 53.0 3.4 20 352-371 6-25 (323)
440 2h92_A Cytidylate kinase; ross 90.3 0.12 4.1E-06 49.5 2.6 20 352-371 4-23 (219)
441 2qmh_A HPR kinase/phosphorylas 90.3 0.15 5.2E-06 49.2 3.3 22 349-371 33-54 (205)
442 3cbq_A GTP-binding protein REM 90.3 0.12 4.2E-06 48.7 2.6 20 352-371 24-43 (195)
443 3llu_A RAS-related GTP-binding 90.3 0.14 4.9E-06 48.0 3.1 20 352-371 21-40 (196)
444 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.14 4.7E-06 46.9 2.9 19 353-371 7-25 (186)
445 2ew1_A RAS-related protein RAB 90.2 0.16 5.6E-06 48.2 3.4 20 352-371 27-46 (201)
446 1vg8_A RAS-related protein RAB 90.2 0.15 5.2E-06 47.8 3.2 20 352-371 9-28 (207)
447 2wsm_A Hydrogenase expression/ 90.2 0.14 4.8E-06 48.9 3.0 20 352-371 31-50 (221)
448 2gno_A DNA polymerase III, gam 90.2 0.52 1.8E-05 48.2 7.4 20 352-371 19-38 (305)
449 3t5g_A GTP-binding protein RHE 90.1 0.15 5E-06 46.8 2.9 20 352-371 7-26 (181)
450 1ksh_A ARF-like protein 2; sma 90.1 0.16 5.4E-06 46.9 3.1 20 352-371 19-38 (186)
451 1ak2_A Adenylate kinase isoenz 90.0 0.17 6E-06 49.2 3.5 20 352-371 17-36 (233)
452 2gf0_A GTP-binding protein DI- 89.9 0.14 4.9E-06 47.6 2.7 20 352-371 9-28 (199)
453 3foz_A TRNA delta(2)-isopenten 89.9 0.17 5.7E-06 52.2 3.4 20 352-371 11-30 (316)
454 3tmk_A Thymidylate kinase; pho 89.9 0.16 5.6E-06 49.4 3.2 22 349-371 4-25 (216)
455 2gf9_A RAS-related protein RAB 89.9 0.15 5.3E-06 47.2 2.9 20 352-371 23-42 (189)
456 1a5t_A Delta prime, HOLB; zinc 89.9 1.9 6.5E-05 44.3 11.5 20 352-371 25-44 (334)
457 2fg5_A RAB-22B, RAS-related pr 89.8 0.15 5.1E-06 47.6 2.7 20 352-371 24-43 (192)
458 1r6b_X CLPA protein; AAA+, N-t 89.7 0.18 6.3E-06 58.0 3.9 19 353-371 490-508 (758)
459 3lxw_A GTPase IMAP family memb 89.7 0.18 6.1E-06 49.8 3.3 20 352-371 22-41 (247)
460 2il1_A RAB12; G-protein, GDP, 89.7 0.16 5.6E-06 47.4 2.9 19 353-371 28-46 (192)
461 2o52_A RAS-related protein RAB 89.6 0.15 5.2E-06 48.0 2.7 20 352-371 26-45 (200)
462 3bwd_D RAC-like GTP-binding pr 89.6 0.17 5.8E-06 46.3 2.9 20 352-371 9-28 (182)
463 2a5j_A RAS-related protein RAB 89.6 0.17 5.8E-06 47.1 2.9 19 353-371 23-41 (191)
464 1z06_A RAS-related protein RAB 89.5 0.18 6E-06 46.8 2.9 20 352-371 21-40 (189)
465 1wf3_A GTP-binding protein; GT 89.4 0.19 6.4E-06 51.4 3.3 19 353-371 9-27 (301)
466 2cjw_A GTP-binding protein GEM 89.4 0.18 6E-06 47.4 2.9 19 353-371 8-26 (192)
467 1zj6_A ADP-ribosylation factor 89.4 0.18 6.1E-06 46.7 2.9 20 352-371 17-36 (187)
468 1zbd_A Rabphilin-3A; G protein 89.3 0.18 6.1E-06 47.3 2.9 19 353-371 10-28 (203)
469 3reg_A RHO-like small GTPase; 89.3 0.18 6.2E-06 47.0 2.9 20 352-371 24-43 (194)
470 4bas_A ADP-ribosylation factor 89.3 0.2 6.8E-06 46.6 3.2 20 352-371 18-37 (199)
471 1zd9_A ADP-ribosylation factor 89.3 0.18 6.2E-06 46.8 2.9 20 352-371 23-42 (188)
472 1x3s_A RAS-related protein RAB 89.3 0.2 6.8E-06 46.3 3.1 20 352-371 16-35 (195)
473 2atv_A RERG, RAS-like estrogen 89.2 0.19 6.4E-06 47.0 2.9 20 352-371 29-48 (196)
474 3oes_A GTPase rhebl1; small GT 89.2 0.17 5.9E-06 47.6 2.7 20 352-371 25-44 (201)
475 1r6b_X CLPA protein; AAA+, N-t 89.2 0.1 3.5E-06 60.2 1.3 20 352-371 208-227 (758)
476 2h57_A ADP-ribosylation factor 89.2 0.16 5.6E-06 47.1 2.4 20 352-371 22-41 (190)
477 3iev_A GTP-binding protein ERA 89.1 0.2 6.8E-06 51.3 3.3 20 352-371 11-30 (308)
478 2hf9_A Probable hydrogenase ni 89.1 0.19 6.4E-06 48.2 2.9 20 352-371 39-58 (226)
479 2bcg_Y Protein YP2, GTP-bindin 89.1 0.18 6E-06 47.5 2.7 20 352-371 9-28 (206)
480 3t5d_A Septin-7; GTP-binding p 89.1 0.17 5.9E-06 50.6 2.7 19 353-371 10-28 (274)
481 2p5s_A RAS and EF-hand domain 89.0 0.19 6.6E-06 47.1 2.9 20 352-371 29-48 (199)
482 3sr0_A Adenylate kinase; phosp 89.0 0.21 7.1E-06 48.2 3.1 19 353-371 2-20 (206)
483 2xtp_A GTPase IMAP family memb 89.0 0.19 6.6E-06 49.5 3.0 20 352-371 23-42 (260)
484 2xxa_A Signal recognition part 89.0 4 0.00014 43.8 13.5 21 352-372 101-121 (433)
485 2b6h_A ADP-ribosylation factor 88.9 0.18 6.3E-06 47.2 2.7 20 352-371 30-49 (192)
486 3iby_A Ferrous iron transport 88.9 0.2 6.9E-06 49.9 3.0 19 353-371 3-21 (256)
487 2iwr_A Centaurin gamma 1; ANK 88.9 0.16 5.4E-06 46.4 2.1 19 353-371 9-27 (178)
488 1p5z_B DCK, deoxycytidine kina 88.9 0.14 4.9E-06 50.8 2.0 24 347-371 21-44 (263)
489 3tqf_A HPR(Ser) kinase; transf 88.8 0.24 8.1E-06 46.7 3.2 22 349-371 15-36 (181)
490 2q3h_A RAS homolog gene family 88.8 0.2 7E-06 46.8 2.9 20 352-371 21-40 (201)
491 3cph_A RAS-related protein SEC 88.8 0.2 7E-06 47.1 2.9 20 352-371 21-40 (213)
492 4hlc_A DTMP kinase, thymidylat 88.7 0.25 8.5E-06 47.6 3.5 20 352-371 3-22 (205)
493 1gwn_A RHO-related GTP-binding 88.7 0.19 6.6E-06 47.8 2.7 20 352-371 29-48 (205)
494 2h17_A ADP-ribosylation factor 88.7 0.19 6.3E-06 46.4 2.4 20 352-371 22-41 (181)
495 2f7s_A C25KG, RAS-related prot 88.6 0.22 7.4E-06 47.3 2.9 19 353-371 27-45 (217)
496 3c5c_A RAS-like protein 12; GD 88.6 0.22 7.5E-06 46.3 2.9 20 352-371 22-41 (187)
497 3a8t_A Adenylate isopentenyltr 88.6 0.25 8.7E-06 51.4 3.6 20 352-371 41-60 (339)
498 2j1l_A RHO-related GTP-binding 88.5 0.2 7E-06 47.7 2.7 20 352-371 35-54 (214)
499 2fh5_B SR-beta, signal recogni 88.5 0.24 8E-06 46.9 3.1 20 352-371 8-27 (214)
500 2fu5_C RAS-related protein RAB 88.5 0.15 5E-06 46.9 1.6 20 352-371 9-28 (183)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=1.2e-69 Score=629.94 Aligned_cols=482 Identities=21% Similarity=0.291 Sum_probs=415.0
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~l~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~~ 80 (620)
||+|++++|++.|+.|.++|++|++.|+++..+......+|++++|++|++.|+..|. ++|+||..++++|..++.+++
T Consensus 302 ~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~l~~ 380 (800)
T 1wb9_A 302 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRT-ARPRDLARMRHAFQQLPELRA 380 (800)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTC-CCHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999987722345668999999999999999985 699999999999999999999
Q ss_pred HHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHhHHHHHHHH
Q 007057 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL 153 (620)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~~~l 153 (620)
++... ..+.|..+...+..++++.+.|.++|+++ ++.|+|++|++|+.+|+.+++.++++.+++
T Consensus 381 ~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~ 451 (800)
T 1wb9_A 381 QLETV---------DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 451 (800)
T ss_dssp HHHSC---------CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88642 13456677777888999999999999976 368999999999999999998888888876
Q ss_pred HHHHHHHHHhcCCCCccccccc-CceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHHHHH
Q 007057 154 KKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (620)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~r~-~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~ee~~ 232 (620)
++. ....++....+.+.+ .+|||+|+.+++..+|++|++.+|.+|+++|++|. +.++++++.++..++..+|.+
T Consensus 452 ~~~----~~~~~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~ 526 (800)
T 1wb9_A 452 VRE----RERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQ 526 (800)
T ss_dssp HHH----HHHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHhCCCceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 553 233455544444433 36999999999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhccccc
Q 007057 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAAS 312 (620)
Q Consensus 233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~ 312 (620)
|+.+|+..+..+...+..+.+.+++||+++|+|.+|.+++||+|.+++++ .|.|++||||+++. ...
T Consensus 527 i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~-~~~------ 593 (800)
T 1wb9_A 527 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQ-VLN------ 593 (800)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHH-HCS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCC------CEEEEeccccEEEc-cCC------
Confidence 99999999999999999999999999999999999999999999998753 69999999999832 110
Q ss_pred CCCCCCcCCCCCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC
Q 007057 313 SNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (620)
Q Consensus 313 ~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~ 390 (620)
+.++ ++++. ++| ++++|+||||||||||||+++.+.++++.|.++|+.. .
T Consensus 594 -------------------------~~~vlndisl~-~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~-~ 645 (800)
T 1wb9_A 594 -------------------------EPFIANPLNLS-PQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-V 645 (800)
T ss_dssp -------------------------SCCCCEEEEEC-SSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-E
T ss_pred -------------------------Cceeeeccccc-CCC-cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhc-c
Confidence 1245 55555 567 9999999999999999999988889999999999875 6
Q ss_pred CccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEE
Q 007057 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVV 469 (620)
Q Consensus 391 ~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli 469 (620)
.++++++++.+++..+++..+.|+||+||+++..++..+++|+|+||||||+|||+.++.+++.++++++.+ .|+++|+
T Consensus 646 ~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~ 725 (800)
T 1wb9_A 646 EIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF 725 (800)
T ss_dssp EECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence 778888899999999999999999999999999998899999999999999999999999998889999987 4899999
Q ss_pred EccChhHHhhccccceeeCceEEEecC--ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007057 470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (620)
Q Consensus 470 ~TH~~~l~~~~~~~~~~~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~ 538 (620)
+|||+++..+|++...+.|++|.++.. .+.++|++..|.++.|||+.+|+.+|+|++++++|++.+..+
T Consensus 726 ~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~l 796 (800)
T 1wb9_A 726 ATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796 (800)
T ss_dssp ECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999888999999999999988754 589999999999999999999999999999999999988654
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.8e-63 Score=582.83 Aligned_cols=488 Identities=21% Similarity=0.264 Sum_probs=380.5
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~----~l~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (620)
||+|++|+|+..|+.|.++|++||+.|+++.. +.......|++++|++|++.|+..|++ +|+||..++++|..+.
T Consensus 355 mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~~~dl~~l~~~l~~l~ 433 (918)
T 3thx_B 355 FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-STQEFFLIVKTLYHLK 433 (918)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998741 122334578999999999999999886 8999999999999877
Q ss_pred -HHHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCC-cCHHHHHHHHHHHHhHH
Q 007057 77 -NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDR-ASEDLELIRAERKRNME 147 (620)
Q Consensus 77 -~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~-------~~~I~d~-as~~L~~iR~~~~~~~~ 147 (620)
.++..+..... ....+.|..++..++.+.+....+...|+++ ++.+.+. ..|.|+.+|+..++...
T Consensus 434 ~~l~~~l~~~~~-----~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 508 (918)
T 3thx_B 434 SEFQAIIPAVNS-----HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID 508 (918)
T ss_dssp HHHHHHHHHHHH-----TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-----hccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHH
Confidence 55555432211 0011223333332211111112333333321 1123332 36889988888888777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHH
Q 007057 148 NLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227 (620)
Q Consensus 148 ~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~ 227 (620)
.+++.+.+.... .. ...-.+++.+++||+|+|+.++...+|+.|+..++.++..+|++|. ++++++++..++.+..
T Consensus 509 ~~~~~l~~~~~~-i~--~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpe-l~~~~~~~~~~~e~~~ 584 (918)
T 3thx_B 509 EIRMHLQEIRKI-LK--NPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPF-IVENYRHLNQLREQLV 584 (918)
T ss_dssp HHHHHHHHHHHH-HT--CTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hC--cccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHH-HHHHHHHHHHHHHHHH
Confidence 777776553221 11 1122366778889999999999999997777777777777899885 8899998888777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhh
Q 007057 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307 (620)
Q Consensus 228 ~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~ 307 (620)
..|.+++.++...+.++...+..+.+.+++|||++|+|.+|..++||+|.+++++ .|.|+++|||+++. .+..
T Consensus 585 ~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~-~~~~ 657 (918)
T 3thx_B 585 LDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------KIVIKNGRHPVIDV-LLGE 657 (918)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------EEEEEEECCHHHHH-HTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCC------cEEEEeccchhhhh-hhcc
Confidence 7788888899999999999999999999999999999999999999999998853 79999999999832 2211
Q ss_pred cccccCCCCCCcCCCCCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCcccc
Q 007057 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP 385 (620)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp 385 (620)
. +.+| +++|++.+| ++++|+||||||||||||++|++.+|+|.|+++|
T Consensus 658 ~-----------------------------~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp 707 (918)
T 3thx_B 658 Q-----------------------------DQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP 707 (918)
T ss_dssp C-----------------------------SSSCCEEEEECTTSC-CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred C-----------------------------CceecccccccCCCC-eEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence 0 1245 677777788 9999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 007057 386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RV 464 (620)
Q Consensus 386 ~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~ 464 (620)
+.. ..++++++++.++|..+++..++|+||+||++++.++..+++|+||||||||+||||.++.++++++++++.+ .|
T Consensus 708 a~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 708 AEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp SSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred chh-hhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 975 6778888899999999999999999999999988888779999999999999999999999999889999865 58
Q ss_pred cEEEEEccChhHHhhccccce-eeCceEEEe----------------cCccccchhhccCCCCCchHHHHHHHcCCCHHH
Q 007057 465 GLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGSTGDSNALNIAKSIGFDRKI 527 (620)
Q Consensus 465 ~~vli~TH~~~l~~~~~~~~~-~~~g~~~~~----------------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v 527 (620)
+++|++|||+++..++++... +.|++|.+. .+.+.|+|++..|.++.|||+.+|+.+|+|++|
T Consensus 787 ~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~v 866 (918)
T 3thx_B 787 SLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 866 (918)
T ss_dssp CEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHH
T ss_pred CeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHH
Confidence 999999999999999998875 889999873 236899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007057 528 IQRAQKLVE 536 (620)
Q Consensus 528 ~~~a~~~~~ 536 (620)
+++|++...
T Consensus 867 i~rA~~~~~ 875 (918)
T 3thx_B 867 LKKAAHKSK 875 (918)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999765
No 3
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.6e-63 Score=584.96 Aligned_cols=494 Identities=18% Similarity=0.237 Sum_probs=400.7
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCC-CCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~---l~~~~~-~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (620)
||+|++|+|+..|+.|.++|++||+.|+++... .....- .|++++|++|++.|+..|+. +|+||..++.+|..++
T Consensus 337 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~-~~~dl~~l~~~l~~~~ 415 (934)
T 3thx_A 337 QGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA-NLQDCYRLYQGINQLP 415 (934)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC-CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988642 222232 59999999999999999886 8999999999999999
Q ss_pred HHHHHHHHhhhccCCccc--ccchHHHHHhcCCChHHHHHHHhhhhccC----C-CcccCCcCHHHHHHHHHHHHhHHHH
Q 007057 77 NVWKKLTEAAELDGDSLQ--RYSPLLELLKNCNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENL 149 (620)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~l~~~I~~~id~~----~-~~I~d~as~~L~~iR~~~~~~~~~l 149 (620)
.++..|............ ...++... +..++++.+.|.++||++ + +.|++++|++|+++|+.+++.++++
T Consensus 416 ~l~~~l~~~~~~~~~~l~~~~~~~l~~~---~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l 492 (934)
T 3thx_A 416 NVIQALEKHEGKHQKLLLAVFVTPLTDL---RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKM 492 (934)
T ss_dssp HHHHHHHHTCCSSSTTGGGGTHHHHHHH---HHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHH---HhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999988753210000000 01223222 335677888899999864 3 5799999999999999999988888
Q ss_pred HHHHHHHHHHHHHhcCC---CCcccccccC-ceEEEEecccccC--CCCcEEEEEecCCcEEEeccchhhhhhhHHHHHh
Q 007057 150 DSLLKKVAAQIFQAGGI---DKPLITKRRS-RMCVGIKASHKYL--LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLS 223 (620)
Q Consensus 150 ~~~l~~~~~~~~~~~~~---~~~~i~~r~~-r~~i~vk~~~~~~--~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~ 223 (620)
.+++.+.. +..++ ....+.+.+. +|+|.|+...... .|..|+..++.++..+|++| ++.++++++..+.
T Consensus 493 ~~~~~~~~----~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~-el~~l~~~~~~~~ 567 (934)
T 3thx_A 493 QSTLISAA----RDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS-KLTSLNEEYTKNK 567 (934)
T ss_dssp HHHHHHHH----HHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECT-THHHHHHHHTTTT
T ss_pred HHHHHHHH----HHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECH-HHHHHHHHHHHHH
Confidence 88776643 33444 3445555544 7998887543322 24457777777777788766 5889999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccceecCCCCCCCcceEEEcccccCccc
Q 007057 224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (620)
Q Consensus 224 ~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~--~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 301 (620)
.++..+|.+|+.+|+..+..+...+..+.+.+++||+++|+|.+|.. ++||+|.+++.+ +..|.|+++|||++.
T Consensus 568 ~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~le 643 (934)
T 3thx_A 568 TEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACVE 643 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCC----CcceEeecCccchhh
Confidence 88889999999999999999999999999999999999999999987 789999998732 136999999999994
Q ss_pred cchhhhcccccCCCCCCcCCCCCCeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHh
Q 007057 302 GSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379 (620)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~ 379 (620)
.. . ++.+| +++|.+.+| ++++|+||||||||||||++|++.+|+|
T Consensus 644 ~~---~-----------------------------~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~aq 690 (934)
T 3thx_A 644 VQ---D-----------------------------EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMAQ 690 (934)
T ss_dssp TC----------------------------------CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hc---C-----------------------------CceeecccceeecCCC-eEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 21 0 01245 667777778 9999999999999999999999999999
Q ss_pred hCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 007057 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (620)
Q Consensus 380 ~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~ 459 (620)
+|+|+|+.+ ..++.+++++.++|..+++.+++|+||+||++++.++..+++|+||||||||+||||.++.+++++++++
T Consensus 691 ~G~~vpa~~-~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~ 769 (934)
T 3thx_A 691 IGCFVPCES-AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769 (934)
T ss_dssp HTCCBSEEE-EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHH
T ss_pred cCCcccccc-ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999986 6788888999999999999999999999999998888889999999999999999999999999999999
Q ss_pred Hhc-CCcEEEEEccChhHHhhccccceeeCceEEE--ecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 007057 460 LRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536 (620)
Q Consensus 460 l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~ 536 (620)
+.+ .|+++|++|||+++..+|++...+.||++.+ +.+.+.+.|++..|.++.|+|+.+|+.+|+|++++++|++.+.
T Consensus 770 l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~ 849 (934)
T 3thx_A 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKAL 849 (934)
T ss_dssp HHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 986 4899999999999999999999999999975 4567899999999999999999999999999999999999998
Q ss_pred Hhcch
Q 007057 537 RLRPE 541 (620)
Q Consensus 537 ~~~~~ 541 (620)
.+...
T Consensus 850 ~le~~ 854 (934)
T 3thx_A 850 ELEEF 854 (934)
T ss_dssp HTTTT
T ss_pred HHHhc
Confidence 76543
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=7.8e-63 Score=569.94 Aligned_cols=467 Identities=22% Similarity=0.292 Sum_probs=397.1
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH--H-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM--M-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~--l-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (620)
||+|++++|++.|+.|.++|++|++.|+++... + .....+|++++|+++++.|+..|. ++|+||..+++++..++.
T Consensus 283 ~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~ 361 (765)
T 1ewq_A 283 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGR-ASPKDLGALRRSLQILPE 361 (765)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999773 2 245568999999999999999886 699999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHhHHHHH
Q 007057 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (620)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~I~~~id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (620)
++..+. +...+..++++.+.|.++|+++ ++.|+|++|++|+.+|+.+++.++++.
T Consensus 362 l~~~l~------------------l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 423 (765)
T 1ewq_A 362 LRALLG------------------EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL 423 (765)
T ss_dssp HHHHHC------------------TTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 888763 1233556788899999999865 357999999999999999888888777
Q ss_pred HHHHHHHHHHHHhcCCCCcccccccC-ceEEEEecccccCCCCcEEEEEecCCcEEEeccchhhhhhhHHHHHhHHHHHH
Q 007057 151 SLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (620)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~~-r~~i~vk~~~~~~~~~g~~~~~s~~g~~~~~ep~~~~~l~n~~~~l~~~e~~e 229 (620)
++..+. ....++....+.+.+. +|+|+|+.++...+|+.|++.+|.+|.++|++|. +.++++++.++..++..+
T Consensus 424 ~~~~~~----~~~~~~~~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~ 498 (765)
T 1ewq_A 424 ELEERE----RERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRR 498 (765)
T ss_dssp HHHHHH----HHHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHcCCCceEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 766543 3344665555544443 6999999999999997799999999999999998 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 007057 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (620)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (620)
|.+|+.+|++.+..+...+..+.+.+++||+++|+|.+|.+++||+|.+ +. .|.++++|||+++. . .
T Consensus 499 e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~~-------~i~i~~~rHP~le~----~-~ 565 (765)
T 1ewq_A 499 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-GD-------RLQIRAGRHPVVER----R-T 565 (765)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-SS-------SEEEEEECCTTGGG----T-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-CC-------cEEEEEeECceEcc----C-C
Confidence 9999999999999999999999999999999999999999999999999 32 59999999999831 0 1
Q ss_pred cccCCCCCCcCCCCCCeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
.+++.++++. | ++++|+||||||||||||+++.+.++++.|.++|+..
T Consensus 566 -----------------------------~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~- 613 (765)
T 1ewq_A 566 -----------------------------EFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE- 613 (765)
T ss_dssp -----------------------------CCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-
T ss_pred -----------------------------ceEeeeccCC-C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhc-
Confidence 2565556666 8 9999999999999999999988888899999999864
Q ss_pred CCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 007057 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469 (620)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli 469 (620)
..++++++++.+++..+++..+.|+|+.++.+++.++..+++|+|+||||||+||++.++.++++++++++.+.|+++|+
T Consensus 614 ~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~ 693 (765)
T 1ewq_A 614 AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF 693 (765)
T ss_dssp EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 56777888888889998888877777666656666666799999999999999999888888877788888877889999
Q ss_pred EccChhHHhhccccceeeCceEEEecC--ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007057 470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (620)
Q Consensus 470 ~TH~~~l~~~~~~~~~~~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~ 538 (620)
+|||+++..++ ...+.|++|.++.. .+.++|++..|.++.|||+++|+.+|+|++++++|++.+..+
T Consensus 694 ~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~l 762 (765)
T 1ewq_A 694 ATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762 (765)
T ss_dssp ECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999988887 66788999988754 588999999999999999999999999999999999988754
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=6.5e-62 Score=577.67 Aligned_cols=490 Identities=20% Similarity=0.266 Sum_probs=372.9
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhc-CCC-----------------
Q 007057 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVS-GQL----------------- 59 (620)
Q Consensus 1 ~G~~~~~~~~l~~~~~~~~i~~~l~~t~e~~~~---l~~~~~~l~~i~Di~~~l~r~~~-g~~----------------- 59 (620)
||+|++|+|+..|+.|.++|++||+.|+++... .....-.|++++|++|++.|+.. |+.
T Consensus 431 mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~ 510 (1022)
T 2o8b_B 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET 510 (1022)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHH
T ss_pred hhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhh
Confidence 899999999999999999999999999988642 12233468899999999999987 441
Q ss_pred -CCHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCcccccchHHHHHh--------cCCChHHHHHHHhhhhcc----C
Q 007057 60 -LSPSEICAVRRT---LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLK--------NCNFLTELEEKIGFCIDC----K 123 (620)
Q Consensus 60 -l~~~el~~i~~~---l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~l~~~I~~~id~----~ 123 (620)
.++.++.++... +..+..+...+..... .. ..+.|..+.. .++.+.++.+.|.++||+ +
T Consensus 511 ~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~--~~---~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~ 585 (1022)
T 2o8b_B 511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD--GF---KSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARK 585 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC---CCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc--cc---CcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhc
Confidence 134445555444 5666667766653211 00 1122444442 345667777788899985 1
Q ss_pred CCcc--cCCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-CcccccccCceEEEEecccccC-CCCcEEEEEe
Q 007057 124 LLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSRMCVGIKASHKYL-LPDGIALNVS 199 (620)
Q Consensus 124 ~~~I--~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~r~~r~~i~vk~~~~~~-~~~g~~~~~s 199 (620)
++.| ++++|++|+++|+.+++.++++.+++.+. ....++. ..+++.+++||+|+|+.++... +|+.|++.++
T Consensus 586 ~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~----~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t 661 (1022)
T 2o8b_B 586 TGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ----RNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKST 661 (1022)
T ss_dssp SCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSS----GGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEE
T ss_pred CCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEeee
Confidence 2344 78899999999999998888888776553 2334544 3356678889999999999887 8989999999
Q ss_pred cCCcEEEeccchhhhhhhHHHHHhHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCc
Q 007057 200 SSGATYFMEPKGAVEFNNMEVRLSNSE---IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGV 274 (620)
Q Consensus 200 ~~g~~~~~ep~~~~~l~n~~~~l~~~e---~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~ 274 (620)
.+|.++|++|. +++...++...+ ...+.++..++...+..+...+..+.+.++.||+++|+|.+|. .++||
T Consensus 662 ~~~~~rf~t~e----l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~ 737 (1022)
T 2o8b_B 662 KKGCKRYWTKT----IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMC 737 (1022)
T ss_dssp TTEEEECCTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEE
T ss_pred ccCccEEechH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcc
Confidence 99999999885 555555544332 2334456666666777789999999999999999999999999 78999
Q ss_pred cceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCcCCCCCCeEEEeeeeeec-CCccc--cccceecC--
Q 007057 275 CPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGI-SDFPV--PIDIKVEC-- 349 (620)
Q Consensus 275 ~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y-~~~~v--~vsl~i~~-- 349 (620)
+|.+++.. +.+..|.+++||||++... | ++.+| +++|.+.+
T Consensus 738 ~P~~~~~~--~~~~~l~i~~~rHP~l~~~--------------------------------~~~~~~v~ndi~l~~~~~~ 783 (1022)
T 2o8b_B 738 RPVILLPE--DTPPFLELKGSRHPCITKT--------------------------------FFGDDFIPNDILIGCEEEE 783 (1022)
T ss_dssp CCEECCTT--TSCCCEEEEEECCCC--------------------------------------CCCCCCEEEEESCCCSC
T ss_pred CCccccCC--CCCceEEEEeccccEEEEE--------------------------------ecCCceEeeeeeecccccc
Confidence 99998420 0123699999999998321 1 12245 56666655
Q ss_pred -----CceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHH
Q 007057 350 -----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 350 -----g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~ 424 (620)
| ++++|+||||||||||||++|++.+|+|+|+|||+.. ..++++++++.++|..+++..+.|+||+||++++.
T Consensus 784 ~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~ 861 (1022)
T 2o8b_B 784 QENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 861 (1022)
T ss_dssp C---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC---------CHHHHHHHHHHH
T ss_pred ccCCCC-cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc-CCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHH
Confidence 7 8999999999999999999999999999999999986 67888899999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhHHh-hccccceeeCceEEE---------
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSC-LKDKDTRFENAATEF--------- 493 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l~~-~~~~~~~~~~g~~~~--------- 493 (620)
|++++++|+||||||||+|||+.++.+++.++++++.+. |+++|++|||+++.. ++++.. +.+|++.+
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~-v~~g~~~~~~~~~~~~~ 940 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA-VRLGHMACMVENECEDP 940 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS-EEEEEEEEC--------
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce-eecCeEEEEEecCcccC
Confidence 999999999999999999999999999888899999876 899999999999765 566554 45788773
Q ss_pred ecCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 007057 494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 540 (620)
Q Consensus 494 ~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~v~~~a~~~~~~~~~ 540 (620)
+.+.+.++|++..|.++.|||+++|+.+|+|++++++|++....+..
T Consensus 941 ~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~ 987 (1022)
T 2o8b_B 941 SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987 (1022)
T ss_dssp -----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 24578899999999999999999999999999999999999876644
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=5.1e-30 Score=256.18 Aligned_cols=167 Identities=18% Similarity=0.218 Sum_probs=138.5
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------HHh
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MSK 379 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------------------~a~ 379 (620)
+++++|++++|++..+ ++||++++| ++++|+||||||||||||++ |++.+ ..+
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 5789999999987665 999999999 99999999999999999999 77643 012
Q ss_pred hCccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 380 AGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 380 ~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.-.|+|+... ..+++ +++++..+|+.+..++++++|||||+ |++++++++.+|+++
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2357887642 11222 22356677888888999999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+.. ++..+.+.|.|+|++|||.++..+||+++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 455566558899999999986689999999999998764
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=5.3e-30 Score=263.50 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=138.5
Q ss_pred eEEEeeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------------------HHhh
Q 007057 326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------------------~a~~ 380 (620)
.++++||+++|++.. + ++||++.+| ++++|+||||||||||||++ |++.+ +.+.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 689999999997533 4 999999999 99999999999999999999 77643 1122
Q ss_pred CccccCCCC---CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 381 GLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 381 G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
-.|+||... ..+++. ++++..+|+.+..++++++|||||+ |++++++++.+|++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 347887631 122332 3456778888889999999999999 588999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+||||.....+.. ++..+. +.|.|+|++|||++ +..+||+++.+.+|++..+
T Consensus 166 lLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp EEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred EEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 555565 55889999999998 5579999999999998765
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=9.6e-30 Score=259.09 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=138.4
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCcc
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLY 383 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~ 383 (620)
+.++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+ ..+.-.|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 36899999999987666 999999999 99999999999999999999 77643 1112347
Q ss_pred ccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 007057 384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (620)
Q Consensus 384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDE 439 (620)
+|+... ..+++ ++.++..+|+.+..++++++|||||+ |++++++++.+|+++||||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 777642 12222 22346677888888999999999999 5889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+... +..+.+.|.|+|++|||++. ..+|++++.+.+|++...
T Consensus 173 Pts~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp TTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred CccccCHHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 9999999999999994 55566668899999999984 578999999999998754
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=1e-29 Score=255.83 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=134.6
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------------
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------------- 376 (620)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 688999999973 233 999999999 99999999999999999999 77643
Q ss_pred HHhhCccccCCCC--CCccHHHH------------------------HHHHcCCchhh-ccccccchHHHH-HHHHHHHh
Q 007057 377 MSKAGLYLPAKNH--PRLPWFDL------------------------ILADIGDHQSL-EQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 377 ~a~~G~~vp~~~~--~~l~~~d~------------------------i~~~ig~~~~~-~~~~s~lSgg~k-rl~~i~~l 428 (620)
..+.-.|+||... ..+++.++ ++..+|+.+.. ++++++|||||+ |+++++++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0122457888752 12233332 34556666654 889999999999 58899999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~-~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++|||+++..+||+++.+.+|++...
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999 4555654 48999999999998889999999999998754
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=7.8e-30 Score=261.23 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=138.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhCcc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G~~ 383 (620)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+ +++...|
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 6899999999998776 999999999 99999999999999999999 77643 2233456
Q ss_pred ccCCCCC--CccH-------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC------CCcEE
Q 007057 384 LPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESLV 435 (620)
Q Consensus 384 vp~~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~------~~~Ll 435 (620)
+|+.... .+++ +++++..+|+.+..++.+++|||||+ |++++++++. +|++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL 169 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL 169 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 7765421 1222 33567778888888999999999999 5888899998 99999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+||||.....+.+ ++..+.+. +.|+|++|||+++ ..+||+++.+.+|++..+
T Consensus 170 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp EECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 55556544 5699999999984 579999999999999765
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=2.1e-29 Score=257.51 Aligned_cols=167 Identities=20% Similarity=0.242 Sum_probs=137.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------H----------HhhC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------M----------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------~----------a~~G 381 (620)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+ + .+..
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 5899999999987665 999999999 99999999999999999999 77643 0 1223
Q ss_pred ccccCCCC--CCccH----------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 382 LYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 382 ~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
.|+|+... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 47787642 11222 22356677888888999999999999 5888999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||||+|||+.....+.. ++..+.+.|.|+|++|||++ +..+||+++.+.+|++...
T Consensus 183 LDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999 45556656889999999998 4579999999999998754
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=2e-29 Score=267.42 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=141.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------HhhC
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~G 381 (620)
.++++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 5789999999998766 999999999 99999999999999999999 776531 1223
Q ss_pred ccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.|+||+.. +.+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 46777641 12233 33457788899999999999999999 58999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+..+..+...+.+...+.|.|+|+||||.+ ...+||++..+.+|++...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 99999999999999998677766677899999999998 5589999999999998765
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=2.5e-29 Score=256.35 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=137.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------HHhhCc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~--------------------~a~~G~ 382 (620)
+++++||+++|++..+ ++||++++| ++++|+||||||||||||++ |++.+ ..+...
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999988666 999999999 99999999999999999999 87643 011234
Q ss_pred cccCCCC--CCc---------------c-------------------HHHHHHHHcCCchhhccccccchHHHH-HHHHH
Q 007057 383 YLPAKNH--PRL---------------P-------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (620)
Q Consensus 383 ~vp~~~~--~~l---------------~-------------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i 425 (620)
|+|+... ..+ + .+++++..+|+.+..++++++|||||+ |++++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 6776541 000 1 123456778888888999999999999 58889
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++++.+|+++||||||+|||+.....+... +..+.+.|.|+|++|||++ +..+||+++.+.+|++..+
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~-l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999994 5556666889999999998 5689999999999998754
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=2.6e-29 Score=256.87 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=137.5
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------H--------------
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------M-------------- 377 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------~-------------- 377 (620)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 5889999999987665 999999999 99999999999999999999 77642 1
Q ss_pred -------HhhCccccCCCC--CCccHH----------------------HHHHHHcCCchh-hccccccchHHHH-HHHH
Q 007057 378 -------SKAGLYLPAKNH--PRLPWF----------------------DLILADIGDHQS-LEQNLSTFSGHIS-RIVD 424 (620)
Q Consensus 378 -------a~~G~~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~-~~~~~s~lSgg~k-rl~~ 424 (620)
.+...|+|+... ..+++. ++++..+|+.+. .++++++|||||+ |+++
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 112347777641 112222 235667788887 8999999999999 5889
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||++. ..+||+++.+.+|++...
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999 455566668899999999984 579999999999998754
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.4e-29 Score=253.86 Aligned_cols=167 Identities=21% Similarity=0.239 Sum_probs=136.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh-Cc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA-GL 382 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~-G~ 382 (620)
+++++||+++|++..+ ++||++++| ++++|+||||||||||||++ |++.+ ..+. ..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 6899999999988665 999999999 99999999999999999999 87643 0111 34
Q ss_pred cccCCCC--CCccH--------------------HHHHHHHc-CCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 007057 383 YLPAKNH--PRLPW--------------------FDLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (620)
Q Consensus 383 ~vp~~~~--~~l~~--------------------~d~i~~~i-g~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLD 438 (620)
|+|+... ..+++ ++.++..+ |+.+..++++++|||||+ |++++++++.+|+++|||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7777641 11222 23345556 376777899999999999 588999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 439 Ept~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
|||+|||+.....+... +..+.+.|.|+|++|||++ +..+||+++.+.+|++...
T Consensus 165 EPts~LD~~~~~~l~~~-l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp CTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999994 4556656889999999997 6689999999999998654
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=4.3e-29 Score=265.08 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=139.8
Q ss_pred CCeEEEeeeeeecCCc----cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH--------------------
Q 007057 324 NSEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------- 376 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~----~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------- 376 (620)
..+|+++||+|+|++. .+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3579999999999642 23 999999999 99999999999999999999 77643
Q ss_pred --HHhhCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 377 --MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 377 --~a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
..+.-.|+||... ..+++. ++++..+|+.+..++++++|||||+ |++++++++.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1122347888752 122332 3456778898899999999999999 5888999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEec
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~~ 495 (620)
+|++|||||||+||||.....+.. ++..+. +.|.|+|++|||++ +..+||++..+.+|++..+.
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECC
T ss_pred CCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999 555565 45899999999998 45899999999999997653
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=1.4e-28 Score=250.11 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=135.6
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------HhhCccccCCCCC--Ccc
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 393 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------a~~G~~vp~~~~~--~l~ 393 (620)
+++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|+.... .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCB
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCC
Confidence 578999999998 6655 999999999 99999999999999999999 776542 1122467775411 111
Q ss_pred H-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 394 W-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 394 ~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+ ++.++..+|+.+..++++++|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 23456677888888999999999999 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 448 EGVALATSILQYLRDR-VGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all~~l~~~-~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
....+...+ ..+.+. |.|+|++|||.+. ..+||+++.+.+|+ ...
T Consensus 163 ~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 163 NQDIVLSLL-IDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HHHHHHHHH-HHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred HHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 999999954 555554 8899999999984 58999999999998 543
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.96 E-value=2.3e-28 Score=259.34 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=138.8
Q ss_pred CCCeEEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhC
Q 007057 323 ENSEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAG 381 (620)
Q Consensus 323 g~~~l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G 381 (620)
|...++++||+++| ++..+ ++||++++| ++++|+||||||||||||+| |++.+- .+..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 44579999999999 77655 999999999 99999999999999999999 776431 1112
Q ss_pred ccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.|+||... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 169 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLF 169 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 36666531 12222 23456778888889999999999999 58999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 438 DEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||+|||+..+..+...+. .+. +.|.|+|+||||.+ ...+||++..+.+|++...
T Consensus 170 DEP~s~LD~~~r~~l~~~l~-~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVR-QVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHH-HHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999554 454 45889999999998 4589999999999998754
No 19
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.6e-28 Score=262.35 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=138.6
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 4789999999998766 999999999 99999999999999999999 776531 11123677
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
|+.. +.+++. ++++..+|+.+..++++++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7641 222332 3456778898999999999999999 588999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
++||+..+..+... +..+. +.|.|+|+||||++ ...+||++..+.+|++...
T Consensus 162 s~LD~~~~~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 162 SNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTSCHHHHHHHHHH-HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCHHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999994 44554 45899999999997 5589999999999998764
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=2.1e-28 Score=250.63 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=136.3
Q ss_pred eEEEeeeeeecC--C---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH----------------HHhhC
Q 007057 326 EMTVGSLSKGIS--D---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------MSKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y~--~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~----------------~a~~G 381 (620)
+++++||+++|+ + +.+ ++||++.+| ++++|+||||||||||||+| |++.+ ..+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 378999999997 4 344 999999999 99999999999999999999 87643 11223
Q ss_pred ccccCCC---CCCccH--------------------HHHHHHHcCCc--hhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 382 LYLPAKN---HPRLPW--------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 382 ~~vp~~~---~~~l~~--------------------~d~i~~~ig~~--~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.|+|+.. ...+++ +++++..+|+. +..++.+++|||||+ |++++++++.+|+++
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 4677752 111111 34567778888 888999999999999 589999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+.....+... +..+.+.|.|+|++|||++ +..+||+++.+.+|++...
T Consensus 161 lLDEPts~LD~~~~~~l~~~-l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRI-VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred EEcCccccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999994 4556555889999999988 5578999999999998754
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=6.7e-29 Score=255.95 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=136.0
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH---------------------Hhh
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~---------------------a~~ 380 (620)
.+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 46899999999988666 999999999 99999999999999999999 776431 111
Q ss_pred CccccCCCC----CCccH-------------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 381 GLYLPAKNH----PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 381 G~~vp~~~~----~~l~~-------------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
..|+|+... ..+++ +++++..+|+.+..++++++|||||+ |++++++++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence 235555420 00111 23456677888888999999999999 5889999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEccChhH-HhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~v--li~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
+|+++||||||+|||+.....+...+ ..+.+.|.|+ |++|||++. ..+||+++.+.+|++...
T Consensus 179 ~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 179 QPQVLILDEPAAGLDFIARESLLSIL-DSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHH-HHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999954 4455557899 999999984 589999999999998754
No 22
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=5.2e-28 Score=257.09 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=138.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+|+|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.|+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 4789999999988655 999999999 99999999999999999999 776531 11223677
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
|... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 7641 12222 33567788888889999999999999 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554433345889999999988 4589999999999998754
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=3.9e-28 Score=257.19 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=137.2
Q ss_pred EEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-----------------HHhhCccccCC
Q 007057 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------MSKAGLYLPAK 387 (620)
Q Consensus 327 l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-----------------~a~~G~~vp~~ 387 (620)
++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |+..+ ..+.-.|+||.
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 678999999987623 999999999 99999999999999999999 77643 12223477876
Q ss_pred CC--CCccH------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 388 NH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 388 ~~--~~l~~------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
.. ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 41 22222 23456778888889999999999999 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999554433445889999999987 5589999999999998754
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=3.1e-28 Score=247.23 Aligned_cols=167 Identities=22% Similarity=0.210 Sum_probs=129.9
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hh--hHH-------------------HHhh-
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL--ASL-------------------MSKA- 380 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gl--i~~-------------------~a~~- 380 (620)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+ +.+ ..+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 4789999999987666 999999999 99999999999999999999 87 321 1122
Q ss_pred CccccCCCC--CCccH------------------------HHHHHHHcCC-chhhcccccc-chHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNH--PRLPW------------------------FDLILADIGD-HQSLEQNLST-FSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~--~~l~~------------------------~d~i~~~ig~-~~~~~~~~s~-lSgg~k-rl~~i~~l~~~ 431 (620)
..|+|+... ..+++ +++++..+|+ .+..++++++ |||||+ |++++++++.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 246777642 11121 1234555677 4677889999 999999 58899999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hh-ccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~-~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.++. .+ ||+++.+.+|++...
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999 5555666688999999999854 56 599999999988754
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=5.3e-28 Score=245.09 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=130.5
Q ss_pred eEEEeeeeeec--CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 326 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 326 ~l~~~~l~~~y--~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
.++++||+++| ++..+ ++||++++| ++++|+||||||||||||+| |++.+ +.+..
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 57899999999 34445 999999999 99999999999999999999 77643 12223
Q ss_pred ccccCCCCC-CccHHH---------------HHHHHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFD---------------LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+|+.... ..++.+ .++..+++.+.++ +++++|||||+ |++++++++.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 477876421 113333 2334455554443 34589999999 5899999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||+|||+.....+...+. .+. .|.|+|++||+++....||+++.+.+|++...
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~-~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMH-KIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHH-HHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH-HHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999554 455 48899999999986667999999999998754
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=5.8e-28 Score=248.02 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=132.6
Q ss_pred CeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
++++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ +.+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 47899999999975 445 999999999 99999999999999999999 77643 122
Q ss_pred hCccccCCCCC-CccHHHHH-------------------------HHHc--CCchhhccccccchHHHH-HHHHHHHhcC
Q 007057 380 AGLYLPAKNHP-RLPWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d~i-------------------------~~~i--g~~~~~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
...|+|+.... ..++.+++ +..+ |+...+++++++|||||+ |++++++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 23478876421 12333332 2222 334445678899999999 5899999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|++|||||||+|||+.....+.. ++..+. +.+.|+|++||+.+....||+++.+.+|++...
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 445554 357899999999986667999999999988654
No 27
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=3.5e-28 Score=245.30 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=133.6
Q ss_pred EEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCccccCC
Q 007057 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (620)
Q Consensus 327 l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp~~ 387 (620)
++++||+++|++. + ++||++++ ++++|+||||||||||||++ |++.+. .+.-.|+|+.
T Consensus 2 l~~~~l~~~y~~~-l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGNF-RLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCCE-EeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 5789999999864 5 99999987 69999999999999999999 776531 1112467776
Q ss_pred CC--CCccH-------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 007057 388 NH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (620)
Q Consensus 388 ~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD 445 (620)
.. ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 41 11121 23456778888888999999999999 5889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 446 PSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~-~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+.....+...+ ..+.+ .|.|+|++|||.+ +..+||+++.+.+|++...
T Consensus 159 ~~~~~~~~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 159 LKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHHHHH-HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999954 44544 4889999999988 5689999999999998764
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=6.1e-28 Score=256.86 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=137.4
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.|+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 4789999999987655 999999999 99999999999999999999 776531 11224677
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
|... ..+++. ++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 7641 222322 3456678888889999999999999 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+..+..+...+ ..+. +.|.|+|+||||.+ ...+||++..+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 162 SNLDALLRLEVRAEL-KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp GGSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999954 4454 44889999999998 4589999999999998754
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=9.8e-28 Score=256.43 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=137.1
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------Hh
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK 379 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a~ 379 (620)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 4789999999987655 999999999 99999999999999999999 776431 01
Q ss_pred hCccccCCCC--CCccHH---------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEE
Q 007057 380 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (620)
Q Consensus 380 ~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~Ll 435 (620)
.-.|+||... ..+++. ++++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1236777641 222322 2456677888889999999999999 589999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 436 LLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
||||||+|||+..+..+...+.+...+.|.|+|+||||.+ ...+||++..+.+|++...
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999554433345889999999988 4589999999999998754
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=9e-28 Score=256.43 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=136.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------HhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------a~~G~~vp 385 (620)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.|+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 4789999999987655 999999999 99999999999999999999 776431 11223667
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 007057 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (620)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt 441 (620)
|... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6531 11222 33567788998899999999999999 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||+..+..+...+.+...+.|.|+|+||||.+ ...+||++..+.+|++...
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554433344889999999988 4589999999999998754
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.3e-27 Score=244.98 Aligned_cols=168 Identities=21% Similarity=0.203 Sum_probs=133.2
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh--HH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli--~~-------------------~a~~ 380 (620)
..++++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+ ..+.
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 36899999999987665 999999999 99999999999999999999 873 11 1122
Q ss_pred -CccccCCCCC--CccH----------------------------HHHHHHHcCCc-hhhccccc-cchHHHH-HHHHHH
Q 007057 381 -GLYLPAKNHP--RLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDIL 426 (620)
Q Consensus 381 -G~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-~lSgg~k-rl~~i~ 426 (620)
..|+|+.... .+++ +++++..+|+. +..+++++ +|||||+ |+++++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 2467776421 1111 12345667775 45677887 5999999 588999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH-hh-ccccceeeCceEEEe
Q 007057 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~-~~-~~~~~~~~~g~~~~~ 494 (620)
+++.+|+++||||||+|||+.....+.+ ++..+.+.|.|+|++|||.++. .+ ||+++.+.+|++...
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999998 5555666688999999999855 55 899999999998754
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=5.3e-28 Score=239.81 Aligned_cols=158 Identities=19% Similarity=0.255 Sum_probs=126.7
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------HhhCccccCC
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAK 387 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~~G~~vp~~ 387 (620)
..|+++||+++|++ .+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|+.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 46899999999988 66 999999999 99999999999999999999 776431 1223477776
Q ss_pred CC--CCccHH-------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 007057 388 NH--PRLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (620)
Q Consensus 388 ~~--~~l~~~-------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD 445 (620)
.. ..+++. +.++..+|+.+. ++++++|||||+ |++++++++.+|+++||||||+|||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 42 112222 234556677766 889999999999 5889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhcccccee
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF 486 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~ 486 (620)
+.....+...+ ..+.+.|.|+|++||+.+ +..+|++++.+
T Consensus 166 ~~~~~~l~~~l-~~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 166 EDSKHKVLKSI-LEILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp TTTHHHHHHHH-HHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred HHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 99999999954 455555789999999988 45778877654
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=1.3e-27 Score=253.92 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=137.3
Q ss_pred eEEEeeeeeecCCcc--c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------------------H
Q 007057 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S 378 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~--v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------------------a 378 (620)
+++++||+++|++.. + ++||++.+| ++++|+||||||||||||+| |+..+- .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 478999999998765 5 999999999 99999999999999999999 776431 0
Q ss_pred hhCccccCCCC--CCccH---------------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcE
Q 007057 379 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 379 ~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
+.-.|+||... ..+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11236676541 12222 23467778888889999999999999 58999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554433345889999999988 5589999999999998754
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=3.4e-27 Score=239.31 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=133.9
Q ss_pred eEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhCcccc
Q 007057 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G~~vp 385 (620)
+++++||+++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+ +.+.-.|+|
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEceEEE---EEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence 5788999987 234 999999999 99999999999999999999 87642 112234777
Q ss_pred CCCC--CCccH----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCc-------EEEEcC
Q 007057 386 AKNH--PRLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES-------LVLIDE 439 (620)
Q Consensus 386 ~~~~--~~l~~----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~-------LlLLDE 439 (620)
+... ..+++ ++.++..+|+.+..++++++|||||+ |++++++++.+|+ ++||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 7642 11122 34567778888889999999999999 5888999999999 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH-HhhccccceeeCceEEEe
Q 007057 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 440 pt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
||+|||+.....+... +..+.+.|.|+|++|||.+. ..+|++++.+.+|++...
T Consensus 160 Pts~LD~~~~~~l~~~-l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKI-LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp TTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CcccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999994 45565558899999999985 589999999999998654
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.9e-27 Score=241.62 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=131.8
Q ss_pred EEEeeeeeecCC----ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH----------------hhCc-
Q 007057 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGL- 382 (620)
Q Consensus 327 l~~~~l~~~y~~----~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a----------------~~G~- 382 (620)
++++||+++|++ +.+ ++||++. | ++++|+||||||||||||++ |++ +-. +.-.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 678999999976 555 9999999 9 99999999999999999999 877 510 0123
Q ss_pred cccCCCCCCccHH-----------------HHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 007057 383 YLPAKNHPRLPWF-----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (620)
Q Consensus 383 ~vp~~~~~~l~~~-----------------d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~g 443 (620)
|+|+.....+++. ++++..+|+. +..++++++|||||+ |++++++++.+|+++||||||+|
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 7777642223322 3456678888 888999999999999 58899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhcc-ccceeeCceEEEe
Q 007057 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD-KDTRFENAATEFS 494 (620)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~-~~~~~~~g~~~~~ 494 (620)
||+.....+.+. +..+.+ |+|++|||++ +..+|+ +++.+.+|++...
T Consensus 159 LD~~~~~~l~~~-L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 159 VDAARRHVISRY-IKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp CCHHHHHHHHHH-HHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred cCHHHHHHHHHH-HHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 999999999984 444443 9999999988 468999 9999999988654
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=1.4e-27 Score=241.29 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=128.2
Q ss_pred EEEeeeeeec-CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------------------HhhCcc
Q 007057 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (620)
Q Consensus 327 l~~~~l~~~y-~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------------------a~~G~~ 383 (620)
++++||+++| ++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.|
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 6789999999 55555 999999999 99999999999999999999 776431 112346
Q ss_pred ccCCCCC-CccH----------------HHHHHHHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCCCcE
Q 007057 384 LPAKNHP-RLPW----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 384 vp~~~~~-~l~~----------------~d~i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~~~L 434 (620)
+|+.... ..++ +.+++..+++.+.++ +++++|||||+ |++++++++.+|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 7765411 0122 223444555554433 45689999999 59999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEE
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~ 493 (620)
+||||||+|||+.....+...+ ..+. .+.|+|++||+.+....||+++.+.+|++..
T Consensus 161 llLDEPts~LD~~~~~~i~~~l-~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKAL-DSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHH-HHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEEECCcccCCHHHHHHHHHHH-HHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999954 4455 4889999999998666799999999998754
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=3.3e-27 Score=236.57 Aligned_cols=168 Identities=16% Similarity=0.102 Sum_probs=127.3
Q ss_pred CeEEEeeeeeecC--Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh------hCccccCCCCC-Cc
Q 007057 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RL 392 (620)
Q Consensus 325 ~~l~~~~l~~~y~--~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~------~G~~vp~~~~~-~l 392 (620)
+.++++||+++|+ +..+ ++||++++| ++++|+||||||||||||++ |++.+..- ...|+|+.... ..
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 3689999999995 3445 999999999 99999999999999999999 77654210 11367776421 11
Q ss_pred cHHHHH--------------HHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 007057 393 PWFDLI--------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (620)
Q Consensus 393 ~~~d~i--------------~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~ 446 (620)
++.+++ +...++.+.+ .++.++|||||+ |++++++++.+|+++||||||+|||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 333332 2333443322 234589999999 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
.....+.+.++..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 164 ~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 164 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 999998874333333 37899999999986667999999999998754
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=6.2e-27 Score=239.00 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=129.6
Q ss_pred CeEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhh
Q 007057 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~ 380 (620)
..++++||+++|++. .+ ++||++++| ++++|+||||||||||||+| |++.+ ..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence 368999999999752 34 999999999 99999999999999999999 77532 1122
Q ss_pred CccccCCCCC-CccHHHHH---------------HHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFDLI---------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
-.|+|+.... ..++.+++ +..+++.+.+ .+.+++|||||+ |++++++++.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 3477776421 12333332 3334443322 356789999999 589999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+... +..+.+ +.|+|++||+.+....||+++.+.+|++...
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~-l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKA-VEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHH-HHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999884 455554 7899999999986667999999999988654
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=236.48 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=127.5
Q ss_pred eEEEeeeeeecC--Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh------hCccccCCCC-CCcc
Q 007057 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PRLP 393 (620)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~------~G~~vp~~~~-~~l~ 393 (620)
+++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+..- .-.|+|+... ...+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 478999999997 3445 999999999 99999999999999999999 77654210 0136777642 1223
Q ss_pred HHHHH--------------HHHcCCch-----------hhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 007057 394 WFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (620)
Q Consensus 394 ~~d~i--------------~~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~ 447 (620)
+.+++ ...++..+ .+++++++|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 33332 22222221 24577899999999 589999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 448 EGVALATSIL--QYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 448 ~~~~l~~all--~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
....+...+. ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 162 ~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 162 VGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 9999988543 2233 47899999999986668999999999988654
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=8.3e-27 Score=243.00 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=130.5
Q ss_pred CeEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.|+++||+|+|+ +..+ ++||+|++| ++++|+||||||||||+|+| |++.+ +.+.-
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4689999999995 3445 999999999 99999999999999999999 77643 22334
Q ss_pred ccccCCCCC-CccHHHHH---------------HHHcCCchh-----------hccccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDLI---------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.|+||.... ..++.+++ +...++.+. +......|||||+ |++++++++.+|+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 578887521 11333333 333333333 3345579999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|||||||++||+.....+...+.+ +.+ +.|+|++||+++....||+++.+.+|++...
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~~-l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAK-VCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVER 269 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHH-HHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999985544 544 6899999999996666999999999998765
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=245.65 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=136.0
Q ss_pred CeEEEeeeeeec--CCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH------------------HHhhC
Q 007057 325 SEMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y--~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------~a~~G 381 (620)
+.|+++||+|+| ++..+ ++||+|.+| ++++|+||||||||||||+| |+... +.+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 468999999999 55555 999999999 99999999999999999999 77531 12233
Q ss_pred ccccCCCCC-CccH--------------HHHHHHHcCCchhhcccccc-----------chHHHH-HHHHHHHhcCCCcE
Q 007057 382 LYLPAKNHP-RLPW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (620)
Q Consensus 382 ~~vp~~~~~-~l~~--------------~d~i~~~ig~~~~~~~~~s~-----------lSgg~k-rl~~i~~l~~~~~L 434 (620)
.|+||.... ..++ +.+++..+++.+.+++.++. |||||+ |++++++++.+|++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 478876521 1122 33456778888888888888 999999 59999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 435 lLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+||||||+|||+..+..+...+ ..+. .+.|+|++||+.+....||++..+.+|++...
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l-~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTL-KQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHH-HTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999988844 4343 46899999999986677999999999998764
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=2.2e-25 Score=230.78 Aligned_cols=167 Identities=15% Similarity=0.078 Sum_probs=115.3
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH------hhCccccCCCCC-CccHH
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLPWF 395 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a------~~G~~vp~~~~~-~l~~~ 395 (620)
+.++++||++.+ ...+ ++||++.+| ++++|+||||||||||||+| |++.+.. ..-.|+|+.... ..++.
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK 116 (290)
T ss_dssp -----------C-CCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence 357889999864 2223 999999999 99999999999999999999 7765421 011367776421 12444
Q ss_pred HHHH-------------HHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 007057 396 DLIL-------------ADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (620)
Q Consensus 396 d~i~-------------~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~ 450 (620)
+++. ...++.+.++ +++++|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 117 enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 117 ENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 4442 2233333222 23479999999 588999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 451 ~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
.+...++..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 197 ~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 197 EIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 98874333343 37899999999986667999999999998654
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=8.5e-25 Score=244.51 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=127.9
Q ss_pred CCeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-------HhhCccccCCCCC--Cc
Q 007057 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RL 392 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-------a~~G~~vp~~~~~--~l 392 (620)
...++++|+++.|++..+ .+++++.+| ++++|+||||||||||+|+| |++.+. .+.-.++|+.... ..
T Consensus 267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~ 345 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDG 345 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSS
T ss_pred cceEEEcceEEEECCEEEEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCC
Confidence 346889999999988555 678999999 99999999999999999999 665432 1111244543211 12
Q ss_pred cHH------------------HHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHH
Q 007057 393 PWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (620)
Q Consensus 393 ~~~------------------d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~ 453 (620)
++. ++++..+++.+..++++++|||||+ |++++++++.+|++|||||||+|||+..+..+.
T Consensus 346 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 425 (538)
T 3ozx_A 346 TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA 425 (538)
T ss_dssp BHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 222 2334456667778899999999999 588899999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 454 ~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
..+.+...+.|.|+|+||||++ +..+||+++.+.+
T Consensus 426 ~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9554433456889999999998 4578999998875
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=1.8e-24 Score=242.15 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=128.7
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------HhhCccccCCCCC--CccH
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW 394 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------a~~G~~vp~~~~~--~l~~ 394 (620)
.+++++|+++.|++... .+++++.+| ++++|+||||||||||||+| |++.+- .....|+|+.... .+++
T Consensus 286 ~~l~~~~l~~~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeeEEEEECCEEEEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH
Confidence 46889999999987544 788899999 99999999999999999999 766542 1112367775421 2222
Q ss_pred HH-----------------HHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 007057 395 FD-----------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (620)
Q Consensus 395 ~d-----------------~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~al 456 (620)
.+ +++..+|+.+..++++++|||||+ |++++++++.+|++|||||||+|||+.....+...+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11 233445677778999999999999 588889999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 457 l~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
.+...+.|.|+|++|||++ +..+||+++.+.+
T Consensus 445 ~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 445 RHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4433356889999999998 5579999998875
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=2e-24 Score=241.84 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=122.2
Q ss_pred eeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-h------------hC-----------
Q 007057 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------AG----------- 381 (620)
Q Consensus 330 ~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-~------------~G----------- 381 (620)
+||+|+|++.. + ++| ++.+| ++++|+||||||||||||+| |++.+-. . .|
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 58999998753 4 888 89999 99999999999999999999 6653210 0 00
Q ss_pred ------ccccCCCC--C---Ccc------------HHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 ------LYLPAKNH--P---RLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ------~~vp~~~~--~---~l~------------~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.++|+... . ... .+++++..+|+.+..++++++|||||+ |++++++++.+|++|||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFF 182 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01222100 0 001 134577888998889999999999999 58888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
||||+|||+.....+.. +++.+.+.|.|+|++|||++ +..+||+++.+.+
T Consensus 183 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 183 DEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999999999999999 55556667899999999998 5578999887754
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=3.2e-24 Score=242.86 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=130.1
Q ss_pred CeEEEeeeeeecCCccc-cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH------HhhCccccCCCCC--CccH
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW 394 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------a~~G~~vp~~~~~--~l~~ 394 (620)
..++++|+++.|++..+ .+++++.+| ++++|+||||||||||||+| |++.+- ...-.|+||.... .+++
T Consensus 356 ~~l~~~~l~~~~~~~~l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv 434 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSFKLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 434 (607)
T ss_dssp EEEEECCEEEECSSCEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeceEEEecceEEEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcH
Confidence 46889999999987544 788899999 99999999999999999999 766532 1112367776421 1222
Q ss_pred -----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 007057 395 -----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (620)
Q Consensus 395 -----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~al 456 (620)
.++++..+|+.+..++++++|||||+ |++++++++.+|+++||||||+|||+..+..+...+
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 12345667888888999999999999 588889999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 457 l~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
.+...+.|.|+|++|||++ +..+||+++.+.+
T Consensus 515 ~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4433456889999999998 4578999998874
No 47
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=3.2e-24 Score=242.79 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=129.9
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ ..+ ++|+++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQG-KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 46899999999974 445 999999999 99999999999999999999 76543 1122
Q ss_pred CccccCCCCC-CccHHH----------------HHHHHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHP-RLPWFD----------------LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d----------------~i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
-.++||+... ..++.+ +++...++.+.++ .+..+|||||+ |++++++++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3467776410 011222 2334444444433 34589999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+.+.+. .+.+ |.|+|++||+++....||+++.+.+|++...
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~-~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALD-ELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHH-HHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999988554 4554 7899999999986678999999999998754
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=4.2e-24 Score=241.97 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=122.8
Q ss_pred eeeeeecCCcc-c--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-h------------hC-----------
Q 007057 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------AG----------- 381 (620)
Q Consensus 330 ~~l~~~y~~~~-v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-~------------~G----------- 381 (620)
+||+++||+.. + ++| ++.+| ++++|+||||||||||||+| |++.+-. . .|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 89999998753 4 888 89999 99999999999999999999 6653210 0 00
Q ss_pred ------ccccCCCC--C---C------------ccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 382 ------LYLPAKNH--P---R------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 382 ------~~vp~~~~--~---~------------l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
.++|+... . . ...+++++..+|+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11222100 0 0 01245678888998889999999999999 58888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
||||+|||+..+..+.. +++.+.+.|.|+|+||||++ +..+||++..+.+
T Consensus 253 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEEECC
Confidence 99999999999999999 55556666899999999998 4578998887754
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=2.9e-24 Score=243.09 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=131.0
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ +.+ ++|+++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 46899999999973 445 999999999 99999999999999999999 77643 1223
Q ss_pred CccccCCCCC-CccHHHH----------------HHHHcCCchhhc-----------cccccchHHHH-HHHHHHHhcCC
Q 007057 381 GLYLPAKNHP-RLPWFDL----------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~----------------i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
-.|+||+... ..++.++ ++...++.+.++ .+..+|||||+ |++++++++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3478886521 1123333 333344443333 35589999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||+|||+.....+.+.+. .+.+ |.|+|++||+++....||+++.+.+|++...
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~-~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 499 SPILILDEATSALDTESERAIQAALD-ELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHH-HHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHH-HHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999998554 4554 7899999999986678999999999998754
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=4.9e-24 Score=241.84 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=129.5
Q ss_pred Ce-EEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HH
Q 007057 325 SE-MTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (620)
Q Consensus 325 ~~-l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a 378 (620)
+. ++++||+++|++. .+ ++||++++| ++++|+||||||||||+|++ |+..+ +.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTT-CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 35 8999999999752 34 999999999 99999999999999999999 77643 12
Q ss_pred hhCccccCCCCC-CccHHH------------------HHHHHcCCchhhc-----------cccccchHHHH-HHHHHHH
Q 007057 379 KAGLYLPAKNHP-RLPWFD------------------LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d------------------~i~~~ig~~~~~~-----------~~~s~lSgg~k-rl~~i~~ 427 (620)
+.-.++||+... ..++.+ +++...++.+.++ .+..+|||||+ |++++++
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 223477876521 112222 3344445443322 23489999999 5999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|+++||||||++||+.....+.+.+ ..+.+ +.|+|++||+++....||+++.+.+|++...
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEAL-DRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999998854 44555 7899999999986677999999999998754
No 51
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=5.2e-24 Score=241.70 Aligned_cols=167 Identities=12% Similarity=0.114 Sum_probs=130.0
Q ss_pred CeEEEeeeeeecCC-ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhhC
Q 007057 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (620)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~G 381 (620)
+.++++||+++|++ ..+ ++|+++++| ++++|+||||||||||+|++ |+..+ +.+.-
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTT-CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 46899999999964 344 999999999 99999999999999999999 77643 12233
Q ss_pred ccccCCCCC-CccHHHHHH---------------HHcCCchhhcc-----------ccccchHHHH-HHHHHHHhcCCCc
Q 007057 382 LYLPAKNHP-RLPWFDLIL---------------ADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES 433 (620)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i~---------------~~ig~~~~~~~-----------~~s~lSgg~k-rl~~i~~l~~~~~ 433 (620)
.++||+... ..++.+++. ...+..+.+++ ...+|||||+ |++++++++.+|+
T Consensus 432 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ 511 (598)
T 3qf4_B 432 GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511 (598)
T ss_dssp EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 478877521 123444442 22233333333 2378999999 5999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 434 LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++||||||++||+.....+.+.+.+ +. .|.|+|++||+++....||++..+.+|++...
T Consensus 512 illlDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 512 ILILDEATSNVDTKTEKSIQAAMWK-LM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHHHH-HH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-Hc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999885544 44 47899999999997777999999999998754
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=8.8e-24 Score=239.25 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=131.1
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPG-SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 46899999999953 345 999999999 99999999999999999999 76643 1233
Q ss_pred CccccCCCCC-CccHHHHH---------------HHHcCC-----------chhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~~ig~-----------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
-.|+||+... ..++.+++ ....+. +..+.++..+|||||+ |++++++++.+|
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 4578887521 11233322 222222 2334567789999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||++||+.....+.+.+.+ +. .+.|+|++||+++....||++..+.+|++...
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKR-YT-KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHH-HS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHH-hC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999996544 43 47899999999997789999999999998765
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=8.1e-24 Score=239.23 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=129.6
Q ss_pred CeEEEeeeeeecCC--ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHhh
Q 007057 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (620)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~~ 380 (620)
+.++++||+++|++ ..+ ++|+++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46899999999964 344 999999999 99999999999999999999 77643 1223
Q ss_pred CccccCCCCC-CccHHHHH---------------HHHcCCchhh-----------ccccccchHHHH-HHHHHHHhcCCC
Q 007057 381 GLYLPAKNHP-RLPWFDLI---------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
-.|+||+... ..++.+++ +...+..+.+ ..+..+|||||+ |++++++++.+|
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 3578887521 11333333 2333333332 344578999999 599999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+++||||||+|||+.....+.+. ++.+. .+.|+|++||+++....||++..+.+|++...
T Consensus 497 ~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQEA-LDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHH-HHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHHH-HHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999998888884 44454 36899999999997677999999999998765
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-23 Score=235.93 Aligned_cols=156 Identities=18% Similarity=0.143 Sum_probs=117.0
Q ss_pred eeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH-h--------------hCc----------
Q 007057 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K--------------AGL---------- 382 (620)
Q Consensus 331 ~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-~--------------~G~---------- 382 (620)
|++++|+.... .....+.+| ++++|+||||||||||||+| |++.+-. . .|.
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~G-ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCCCCCCC-CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 46677765432 333357889 99999999999999999999 5543210 0 000
Q ss_pred -------cccCCCC--------C--------------CccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCC
Q 007057 383 -------YLPAKNH--------P--------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (620)
Q Consensus 383 -------~vp~~~~--------~--------------~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~ 432 (620)
+.|+... . .-..+++++..+|+.+..++.+++|||||+ |++++++++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p 240 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA 240 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCC
Confidence 0011000 0 001234567788998999999999999999 588889999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 433 ~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
+++||||||+|||+.+...+.. +++.+.+.|.|+|++|||++ +..+||++..+.+
T Consensus 241 ~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~ 296 (608)
T 3j16_B 241 DVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296 (608)
T ss_dssp SEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred CEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999998 66667777899999999998 5678999887754
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=3.3e-23 Score=243.00 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=129.3
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH--hhhH---HHHhh-CccccCCC---CCCccH
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--GLAS---LMSKA-GLYLPAKN---HPRLPW 394 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i--Gli~---~~a~~-G~~vp~~~---~~~l~~ 394 (620)
.+...|++++||++.+ ++||++.+| ++++|+||||||||||||+| |.+. ..... ..|+|+.. ...++.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence 5777799999998766 999999999 99999999999999999999 3221 00000 13555432 112222
Q ss_pred --------------HHHHHHHcCCc-hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 395 --------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 395 --------------~d~i~~~ig~~-~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
+.+++..+|+. +..++++++|||||+ |++++++++.+|++|||||||+|||+.....+...+.+
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 33456778884 678999999999999 58888999999999999999999999999999884443
Q ss_pred HHhcCCcEEEEEccChh-HHhhccccceeeCceEE
Q 007057 459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (620)
Q Consensus 459 ~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~g~~~ 492 (620)
.|.|+|++|||++ +..+|++++.+.+|++.
T Consensus 594 ----~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 594 ----CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred ----CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 4889999999998 56899999999999986
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=4.9e-24 Score=249.96 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=79.4
Q ss_pred HHHHHHcCCchh--hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 007057 396 DLILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 396 d~i~~~ig~~~~--~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH 472 (620)
++++..+|+... .++++++|||||+ |++++++++.+|++|||||||+|||+.....+...+ .+.++++|++||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L----~~~g~tVIiISH 956 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL----KEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH----HSCSSEEEEECS
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH----HHhCCEEEEEEC
Confidence 456777888653 5889999999999 588999999999999999999999999988777743 334679999999
Q ss_pred ChhH-HhhccccceeeCceEEEe
Q 007057 473 YADL-SCLKDKDTRFENAATEFS 494 (620)
Q Consensus 473 ~~~l-~~~~~~~~~~~~g~~~~~ 494 (620)
|.++ ..+|++++.+.+|++...
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC-
T ss_pred CHHHHHHhCCEEEEEECCEEEEe
Confidence 9985 589999999999987543
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.8e-23 Score=230.48 Aligned_cols=164 Identities=21% Similarity=0.217 Sum_probs=121.7
Q ss_pred eeeeeecCCc--cc-cccceecCCc----eEEEEEcCCCCcHhHHHHHH-hhhHHHHh------hCccccCCCCCC--cc
Q 007057 330 GSLSKGISDF--PV-PIDIKVECET----RVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHPR--LP 393 (620)
Q Consensus 330 ~~l~~~y~~~--~v-~vsl~i~~g~----~~~~I~GpNGsGKSTlLk~i-Gli~~~a~------~G~~vp~~~~~~--l~ 393 (620)
.+++++|++. .+ +++|++.+|. ++++|+||||||||||||+| |+..+..- .-.|+|+..... .+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 3455666542 22 7888887761 57999999999999999999 66554210 012455542111 12
Q ss_pred H-----------------HHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 007057 394 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (620)
Q Consensus 394 ~-----------------~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~a 455 (620)
+ .+.++..+++.+..++.+++|||||+ |++++++++.+|++|||||||+|||+..+..+...
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 2 23445667777888999999999999 58888999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEccChh-HHhhccccceeeC--ceEEE
Q 007057 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN--AATEF 493 (620)
Q Consensus 456 ll~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~--g~~~~ 493 (620)
+.+...+.|.|+|++|||++ +..+||+++.+.+ |.+..
T Consensus 510 l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 44433456899999999998 4578999998875 55544
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=3.6e-22 Score=223.26 Aligned_cols=155 Identities=16% Similarity=0.074 Sum_probs=113.3
Q ss_pred eeeeecCCccc-ccccee-cCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH---------------hhCc----------
Q 007057 331 SLSKGISDFPV-PIDIKV-ECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGL---------- 382 (620)
Q Consensus 331 ~l~~~y~~~~v-~vsl~i-~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---------------~~G~---------- 382 (620)
+++.+||.+.. -..+.+ .+| ++++|+||||||||||||+| |++.+-. -.|.
T Consensus 4 ~~~~~~~~~~f~l~~l~~~~~G-ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCCCCTT-EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCCCCCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 45667764322 223444 367 99999999999999999999 5542210 0000
Q ss_pred -------cccCCC----C-CCc------------cHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 007057 383 -------YLPAKN----H-PRL------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (620)
Q Consensus 383 -------~vp~~~----~-~~l------------~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLL 437 (620)
..++.. . ... ...+.++..+|+....++++++|||||+ +++++++++.+|+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 000000 0 000 0134577888999899999999999999 58888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-HHhhccccceeeC
Q 007057 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (620)
Q Consensus 438 DEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-l~~~~~~~~~~~~ 488 (620)
||||+|||+.+...+.. +++.+.+ |.|+|++|||++ +..+||++..+.+
T Consensus 163 DEPts~LD~~~~~~l~~-~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAK-AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred ECCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 99999999999999998 5666765 899999999998 5678998877654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=1e-21 Score=225.77 Aligned_cols=95 Identities=23% Similarity=0.231 Sum_probs=81.4
Q ss_pred HHHcCCchh-hccccccchHHHH-HHHHHHHhcCCCc--EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 399 ~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~~--LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+|+.+. .++++++|||||+ |++++++++.+|+ +|||||||+||||.....+.+ ++..+.+.|.|+|+||||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence 445666543 5889999999999 5888899999988 999999999999999999999 5666777789999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 007057 475 DLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 475 ~l~~~~~~~~~~------~~g~~~~~ 494 (620)
++...||+++.+ .+|++.+.
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAA 290 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHhhCCEEEEecccccccCCEEEEe
Confidence 977789999988 77887654
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=2.5e-21 Score=236.51 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=129.1
Q ss_pred CCeEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HH
Q 007057 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a 378 (620)
.+.++++||+++|++. .+ ++||++.+| ++++|+||||||||||++++ |+..+ +.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G-e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG-QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS-SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 3579999999999753 34 999999999 99999999999999999999 76543 12
Q ss_pred hhCccccCCCCC-CccHHHHH-----------------HHHcCCchhh-----------ccccccchHHHH-HHHHHHHh
Q 007057 379 KAGLYLPAKNHP-RLPWFDLI-----------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILEL 428 (620)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d~i-----------------~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~l 428 (620)
+.-.++||+... ..++.+++ ....+..+.+ ..+.+.|||||+ |+++++++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 233477877510 11222222 2333333322 234568999999 59999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+.+|+++||||||+|||+.....+.+++ +.+ ..|.|+|++||+++....||+++++.+|++...
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999999988855 433 347899999999996677999999999998764
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=5.9e-21 Score=233.15 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=127.3
Q ss_pred CeEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HHh
Q 007057 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a~ 379 (620)
+.++++||+|+|++. ++ ++||++++| ++++|+||||||||||++++ |+..+ +.+
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTT-CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 568999999999742 34 999999999 99999999999999999999 66543 122
Q ss_pred hCccccCCCCC-CccHHHHHH---------------HHcCCch-----------hhccccccchHHHH-HHHHHHHhcCC
Q 007057 380 AGLYLPAKNHP-RLPWFDLIL---------------ADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (620)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d~i~---------------~~ig~~~-----------~~~~~~s~lSgg~k-rl~~i~~l~~~ 431 (620)
.-.+|||+... .-++.+++. ...+..+ .+..+..+|||||| |++++++++.+
T Consensus 465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 23478887521 113333332 2222222 23345678999999 59999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 432 ~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
|+++||||||++||+.....+..++ +.+. .|.|+|++||+++....||++.++.+|++...
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~l-~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAAL-DKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHHH-HHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-HHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999887777744 4443 47899999999996667999999999987643
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=1.9e-20 Score=215.18 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcCCC---cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~---~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+..+|+.. ..++++++|||||+ |++++++++.+| ++|||||||+||||.....+.. ++..+.+.|.|+|+||||
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 34455543 45789999999999 588889998776 5999999999999999999999 556677778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|++..+
T Consensus 606 ~~~~~~~d~i~~l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 606 LDVIKTADYIIDLGPEGGDRGGQIVAV 632 (670)
T ss_dssp HHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977889999999 78888765
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=2.7e-20 Score=227.84 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=129.4
Q ss_pred CCeEEEeeeeeecCC---ccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HH
Q 007057 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~---~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a 378 (620)
++.++++||+|+|++ .++ ++||++++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTT-CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCC-cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 356999999999963 345 999999999 99999999999999999999 65532 22
Q ss_pred hhCccccCCCCC-CccHHHHH---------------HHHcCCchh-----------hccccccchHHHH-HHHHHHHhcC
Q 007057 379 KAGLYLPAKNHP-RLPWFDLI---------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS 430 (620)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~-----------~~~~~s~lSgg~k-rl~~i~~l~~ 430 (620)
+.-.||||++.. .-++.++| ....++.+. +..+-..|||||| |+++|+++..
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 234477777521 11223332 233333332 2345578999999 6999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
+|+++||||||++||+.....+.+++.+ +.+ +.|+|++||.+.....||+++++++|++...
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~-~~~-~~T~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDK-AAK-GRTTIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHH-HHT-TSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHH-HhC-CCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 9999999999999999987777775544 443 7899999999998889999999999999765
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=2.5e-20 Score=228.15 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=127.8
Q ss_pred CCeEEEeeeeeecCCc---cc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------HH
Q 007057 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (620)
Q Consensus 324 ~~~l~~~~l~~~y~~~---~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-------------------~a 378 (620)
.+.++++||+++|++. +| ++||+|++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPG-QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTT-CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCC-CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 3579999999999542 45 999999999 99999999999999999999 65432 22
Q ss_pred hhCccccCCCCCCc--cHHH-----------------HHHHHcCCchhh-----------ccccccchHHHH-HHHHHHH
Q 007057 379 KAGLYLPAKNHPRL--PWFD-----------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILE 427 (620)
Q Consensus 379 ~~G~~vp~~~~~~l--~~~d-----------------~i~~~ig~~~~~-----------~~~~s~lSgg~k-rl~~i~~ 427 (620)
+.-.+|||++. -+ ++.+ +.+...++.+.+ ..+-+.|||||| |+++|++
T Consensus 1153 ~~i~~V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 33347777752 11 1222 233334443322 234467999999 5999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceeeCceEEEe
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
++.+|++|||||||+++|+.+-..+.+++.+ +. .++|+|+++|.+.....||+++++++|++...
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~-~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR-AR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTT-TS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHH-Hc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998877775433 22 37899999999987788999999999998754
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=1.6e-19 Score=210.35 Aligned_cols=97 Identities=25% Similarity=0.227 Sum_probs=83.0
Q ss_pred HHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 397 ~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~---~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+++||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566778776 67899999999999 58888999876 59999999999999999999999 5566777789999999
Q ss_pred cChhHHhhcccccee------eCceEEEe
Q 007057 472 HYADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 472 H~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
||+++...||+++.+ .+|++...
T Consensus 906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp CCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred CCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 999977789999999 57777654
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.80 E-value=3e-19 Score=208.83 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=82.8
Q ss_pred HHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 397 ~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~---~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+++||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 3566777776 67899999999999 58888999875 59999999999999999999999 5566777789999999
Q ss_pred cChhHHhhcccccee------eCceEEEe
Q 007057 472 HYADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 472 H~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
||+++...||+++.+ .+|++.+.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 999977889999999 57887654
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=1.5e-19 Score=210.14 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=82.5
Q ss_pred HHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 397 ~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~---~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+++||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 3456667765 46899999999999 58888889885 79999999999999999999999 5666777799999999
Q ss_pred cChhHHhhcccccee------eCceEEEe
Q 007057 472 HYADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 472 H~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
||+++...||+++.+ .+|++...
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~ 819 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence 999966889999999 57888654
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=5.1e-20 Score=175.68 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=89.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH--hhhHH--HHhhCccccCCC-CCCccH--HHHH------HHHcCCchhh
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASL--MSKAGLYLPAKN-HPRLPW--FDLI------LADIGDHQSL 408 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i--Gli~~--~a~~G~~vp~~~-~~~l~~--~d~i------~~~ig~~~~~ 408 (620)
++||++++| ++++|+||||||||||+|++ |...+ -.-.| ++++.. ...+.. ++.+ ....|.....
T Consensus 1 ~vsl~i~~g-ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 1 SMKLTIPEL-SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp CEEEEEESS-EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccccCCCC-EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 478999999 99999999999999999965 21110 00023 343332 111111 1111 1223333222
Q ss_pred ccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 409 EQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPS----------------EGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 409 ~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~~----------------~~~~l~~all~~l~~~~~~vli~T 471 (620)
......|+|++| ++++++++.+|.+++|||||++||+. ....+.. ++..+.+.|.|+|++|
T Consensus 79 -~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 79 -DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQREGFRYVYIL 156 (171)
T ss_dssp -ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHHTCSEEEEE
T ss_pred -ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhcCCcEEEEe
Confidence 234455899985 88889999999999999999999999 4466666 4444555588999999
Q ss_pred cChhHHhh
Q 007057 472 HYADLSCL 479 (620)
Q Consensus 472 H~~~l~~~ 479 (620)
||++...-
T Consensus 157 H~~~~~~~ 164 (171)
T 4gp7_A 157 NSPEEVEE 164 (171)
T ss_dssp CSHHHHHH
T ss_pred CCHHHhhh
Confidence 99986543
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=4.8e-19 Score=207.53 Aligned_cols=96 Identities=28% Similarity=0.287 Sum_probs=81.0
Q ss_pred HHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCC---cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 007057 398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 398 i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~---~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH 472 (620)
++..+|+.. .+.+++++|||||+ |++++++++.+| +|+||||||+|||+.+...|.. ++..+.+.|.|||++||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~~G~TVIvI~H 866 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVDRGNTVIVIEH 866 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 455666654 35789999999999 588889998654 7999999999999999999999 55667777899999999
Q ss_pred ChhHHhhcccccee------eCceEEEe
Q 007057 473 YADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 473 ~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
|+++...||+++.+ .+|++...
T Consensus 867 dL~~i~~ADrIivLgp~gg~~~G~Iv~~ 894 (916)
T 3pih_A 867 NLDVIKNADHIIDLGPEGGKEGGYIVAT 894 (916)
T ss_dssp CHHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred CHHHHHhCCEEEEecCCCCCCCCEEEEE
Confidence 99977779999999 77888765
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.78 E-value=6.5e-19 Score=188.17 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=73.7
Q ss_pred ccccccchHHHH-HHHHHHHhc------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 409 EQNLSTFSGHIS-RIVDILELV------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 409 ~~~~s~lSgg~k-rl~~i~~l~------~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
++++++|||||+ +++++++++ .+|+++||||||+||||.....+.. ++..+.+.|.|+|++||++++...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence 468889999999 478778777 7999999999999999999999998 56667777899999999999888899
Q ss_pred ccceeeCceEE
Q 007057 482 KDTRFENAATE 492 (620)
Q Consensus 482 ~~~~~~~g~~~ 492 (620)
+++.+.+|++.
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999874
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.77 E-value=1.3e-18 Score=188.10 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=69.7
Q ss_pred cccc-chHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 411 NLST-FSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 411 ~~s~-lSgg~k-rl~~i~~l~~~~--~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
+++. +||||+ ++.++++++.+| ++|||||||+|||+.....|... +..+. .+++||+|||++++..+||+++.+
T Consensus 291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~-L~~l~-~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-LSRLA-DTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH-HHHHT-TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHh-CCCEEEEEeCcHHHHhhcCeEEEE
Confidence 3344 599999 588889999999 99999999999999999999994 45555 478999999999988899999999
Q ss_pred ----eCceEEEe
Q 007057 487 ----ENAATEFS 494 (620)
Q Consensus 487 ----~~g~~~~~ 494 (620)
.+|++...
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 78876544
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.9e-20 Score=201.54 Aligned_cols=156 Identities=15% Similarity=0.030 Sum_probs=112.9
Q ss_pred CeEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHh-h-----------CccccCCCC--
Q 007057 325 SEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-A-----------GLYLPAKNH-- 389 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~-~-----------G~~vp~~~~-- 389 (620)
.+++++||++.|+ ++++++.+| ++++|+||||||||||+|+| |++.+... . ..++|+...
T Consensus 117 ~mi~~~nl~~~y~----~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~ 191 (460)
T 2npi_A 117 TMKYIYNLHFMLE----KIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISAT 191 (460)
T ss_dssp THHHHHHHHHHHH----HHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEE
T ss_pred chhhhhhhhehhh----cCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhc
Confidence 3567889999986 588999999 99999999999999999999 88765532 1 135555431
Q ss_pred ---CCccHHHHH------------------HHHcCCchhhccccccchHHHH-HHHHHHH--hcCCCcE----EEEcC-C
Q 007057 390 ---PRLPWFDLI------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILE--LVSRESL----VLIDE-I 440 (620)
Q Consensus 390 ---~~l~~~d~i------------------~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~--l~~~~~L----lLLDE-p 440 (620)
..++..+++ +..+|+.+..+ ..+|||||+ |++++++ ++.+|++ +|||| |
T Consensus 192 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 192 PISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp ECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred ccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 011222222 12233333333 789999999 5999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh--H----H-hhccc-----cceee-CceEE
Q 007057 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--L----S-CLKDK-----DTRFE-NAATE 492 (620)
Q Consensus 441 t~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~--l----~-~~~~~-----~~~~~-~g~~~ 492 (620)
|++||+. ...|.. + +.+.+.++|++||+.+ + . .+|++ ++.+. +|.+.
T Consensus 270 ts~LD~~-~~~l~~-l---~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 270 ISQLDEN-LAELHH-I---IEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp GGGSCSS-CHHHHH-H---HHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred ccccChh-HHHHHH-H---HHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9999998 333333 3 2334778999999976 3 3 78998 88887 77765
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.68 E-value=7.6e-18 Score=162.02 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=81.5
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccC----CCCCCccH-------HHHHHHHcCCc--hhhccccccchHH
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPA----KNHPRLPW-------FDLILADIGDH--QSLEQNLSTFSGH 418 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~----~~~~~l~~-------~d~i~~~ig~~--~~~~~~~s~lSgg 418 (620)
.++|+||||||||||+|++ |++.+. -.|..... .....+++ .++++..++.. ...++++.+||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~-~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG-EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-CCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 5799999999999999999 776421 11211100 00001110 00111111111 2457788899999
Q ss_pred HH-HHHHHHH-----hcCCCcEEEEcC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc---Chh-HHhhccc
Q 007057 419 IS-RIVDILE-----LVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YAD-LSCLKDK 482 (620)
Q Consensus 419 ~k-rl~~i~~-----l~~~~~LlLLDE--pt~glD~~~~~~l~~all~~l~~~~~~vli~TH---~~~-l~~~~~~ 482 (620)
|+ +++++++ ++.+|+++|||| ||+++|+.....+... +.+.+.++|++|| +.+ +..++++
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~----l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI----MHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH----HTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH----HhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 99 5888885 899999999999 9999999988777763 3334667888886 655 4467775
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.68 E-value=1.4e-16 Score=167.16 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=67.0
Q ss_pred hccccccchHHHHH-HHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 408 LEQNLSTFSGHISR-IVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 408 ~~~~~s~lSgg~kr-l~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
.+..++.||+||+| ++++++++ .+|+++||||||++||+.....+.. ++..+. .+.++|++||+.++..+||+
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCce
Confidence 34567899999995 77777765 6889999999999999999999998 455554 47899999999887788887
Q ss_pred c--ceeeCceEEE
Q 007057 483 D--TRFENAATEF 493 (620)
Q Consensus 483 ~--~~~~~g~~~~ 493 (620)
. +.+.+|.-.+
T Consensus 291 ~~~v~~~~g~s~~ 303 (322)
T 1e69_A 291 LHGVTMVNGVSAI 303 (322)
T ss_dssp EEEEEESSSCEEE
T ss_pred EEEEEEeCCEEEE
Confidence 5 5566665443
No 75
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=2.6e-18 Score=169.43 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=73.1
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH----------------hhCccccCCCCCCc-cHHHHHHHHcC---Cc
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHPRL-PWFDLILADIG---DH 405 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a----------------~~G~~vp~~~~~~l-~~~d~i~~~ig---~~ 405 (620)
+.+| ++++|+||||||||||||++ |+ .+.. +...|+|+.....+ .++...+..+. ..
T Consensus 19 i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 19 IDTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 4789 99999999999999999999 77 6521 11224555421112 11111111111 11
Q ss_pred hhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHh
Q 007057 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (620)
Q Consensus 406 ~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~ 478 (620)
+.+..-+.. +.||+ |++++++++.+|+++||||||+| ....+.. ++..+ +.|.|+| +|||++...
T Consensus 97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~-~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM-FLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH-HHTTB-CTTCEEE-EEEC-----
T ss_pred HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH-HHHHh-cCCCEEE-EECCHHHHh
Confidence 111111111 22888 69999999999999999999999 5666666 44445 5577888 999987543
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=4.7e-16 Score=164.29 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=65.0
Q ss_pred ccccccchHHHHH-------HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 409 EQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 409 ~~~~s~lSgg~kr-------l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
+++++.|||||+| ++++++++.+|+++||||||+||||.....+.. ++..+...+.++|++||+.++...|+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 5678999999996 344456788999999999999999999999998 45555666789999999988888899
Q ss_pred ccceee
Q 007057 482 KDTRFE 487 (620)
Q Consensus 482 ~~~~~~ 487 (620)
+++.+.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887653
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.56 E-value=1.9e-16 Score=171.12 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=99.6
Q ss_pred cccceecCCce--------------------EEEEEcCCCCcHhHHHHHH-hhhHHHH-----------hhCccccCCCC
Q 007057 342 PIDIKVECETR--------------------VVVITGPNTGGKTASMKTL-GLASLMS-----------KAGLYLPAKNH 389 (620)
Q Consensus 342 ~vsl~i~~g~~--------------------~~~I~GpNGsGKSTlLk~i-Gli~~~a-----------~~G~~vp~~~~ 389 (620)
++++++++| + +++|+||||||||||+|++ |+..+-. +. .++|+...
T Consensus 41 ~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~ 118 (413)
T 1tq4_A 41 LIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPN 118 (413)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSS
T ss_pred hccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccc
Confidence 899999999 8 9999999999999999999 6554310 11 23333321
Q ss_pred -CCcc------------HHHHHHHHcCCchhhccccccchHH--HH-HHHHHHHhcC----------CCcEEEEcCCCCC
Q 007057 390 -PRLP------------WFDLILADIGDHQSLEQNLSTFSGH--IS-RIVDILELVS----------RESLVLIDEIGSG 443 (620)
Q Consensus 390 -~~l~------------~~d~i~~~ig~~~~~~~~~s~lSgg--~k-rl~~i~~l~~----------~~~LlLLDEpt~g 443 (620)
..+. .+++++..+++.+. +..+. +|+| |+ ++.++++++. +|+++++||||+|
T Consensus 119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred cCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 0111 14567777777654 33333 9998 88 5777788777 9999999999999
Q ss_pred CCHHHHHHHHHHHHHHH----hcC----CcEEEEEccChh---HHhhccccc
Q 007057 444 TDPSEGVALATSILQYL----RDR----VGLAVVTTHYAD---LSCLKDKDT 484 (620)
Q Consensus 444 lD~~~~~~l~~all~~l----~~~----~~~vli~TH~~~---l~~~~~~~~ 484 (620)
||+..+..+...+.+.. .+. ..+++++||+.+ +..+++.+.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999888555542 222 256889999865 667777664
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=2.4e-15 Score=168.07 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=112.5
Q ss_pred eEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC-ccccCCCCCCccHHHHH-----
Q 007057 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG-LYLPAKNHPRLPWFDLI----- 398 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G-~~vp~~~~~~l~~~d~i----- 398 (620)
.+.+++++.+|++-.--++..+.+| ++++|+||||+|||||++++ |+........ .+.+++. .-.++.+.
T Consensus 257 ~~~~~~l~~g~~~ld~vL~g~i~~G-~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMCGGGFFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGM 333 (525)
T ss_dssp CCCCCEECCSCHHHHHHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHHHTTSC
T ss_pred ccccceeecChHHHHHHhCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCC
Confidence 3456677766643100124588899 99999999999999999999 5554321111 2334432 11111111
Q ss_pred ----HHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEE
Q 007057 399 ----LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS-----EGVALATSILQYLRDRVGLAV 468 (620)
Q Consensus 399 ----~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~-----~~~~l~~all~~l~~~~~~vl 468 (620)
+...|.....+..+.+||+|++ ++.+++.+..+|++||+| ||+|+|+. .+..+.. ++..+++.|.|+|
T Consensus 334 ~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~~g~tvi 411 (525)
T 1tf7_A 334 DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQEEITGL 411 (525)
T ss_dssp CHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHHTTCEEE
T ss_pred CHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHhCCCEEE
Confidence 1123444455677889999999 477778899999999999 99999998 7777777 7777888899999
Q ss_pred EEccCh----------h-HHhhccccceeeCce
Q 007057 469 VTTHYA----------D-LSCLKDKDTRFENAA 490 (620)
Q Consensus 469 i~TH~~----------~-l~~~~~~~~~~~~g~ 490 (620)
++||+. . +..+||+++.+.++.
T Consensus 412 lvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 412 FTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999998 5 557899888776653
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.52 E-value=2.4e-16 Score=154.56 Aligned_cols=60 Identities=12% Similarity=-0.170 Sum_probs=47.1
Q ss_pred HhcCCCcEEEEcCCCCCC----CHHHHHHHHHHHHHHHh-cCCcEEEEEccChh-HHhhccccceee
Q 007057 427 ELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (620)
Q Consensus 427 ~l~~~~~LlLLDEpt~gl----D~~~~~~l~~all~~l~-~~~~~vli~TH~~~-l~~~~~~~~~~~ 487 (620)
+++.+|++++||||++|+ |+.....+... +..+. +.+.++|++|||++ ...+|++++.+.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 467789999999999997 77788888884 45565 45789999999998 557899887763
No 80
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=2.5e-14 Score=142.82 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=77.7
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHh-hhHHHHhhC-ccccCCCCCCccHHHHHHHHcCCc-hh---------------
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAG-LYLPAKNHPRLPWFDLILADIGDH-QS--------------- 407 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iG-li~~~a~~G-~~vp~~~~~~l~~~d~i~~~ig~~-~~--------------- 407 (620)
.+++| ++++|+||||||||||++++. ...+....+ .++.... ...........+|.. +.
T Consensus 26 gi~~G-~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC--CHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 57899 999999999999999999993 111111111 1221111 111111112222211 00
Q ss_pred --------hccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC-----HHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 408 --------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD-----PSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 408 --------~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD-----~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.....+..+.++. ..........+|+++++||||+++| +.....+.. +++.+++.|.|+|++||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~-l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK-LNTILLEMGVTTILTTEA 181 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH-HHHHHHHHCCEEEEEECC
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 0001111222222 1111122358999999999999996 444444555 777788779999999999
Q ss_pred hhH----------Hhhc-cccceee
Q 007057 474 ADL----------SCLK-DKDTRFE 487 (620)
Q Consensus 474 ~~l----------~~~~-~~~~~~~ 487 (620)
.+. ..+| |+++.+.
T Consensus 182 ~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 182 PDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp C----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCcccccccChhhEeeeEEEEEe
Confidence 874 3677 8887764
No 81
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.51 E-value=2.5e-15 Score=159.12 Aligned_cols=154 Identities=8% Similarity=0.089 Sum_probs=107.6
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH--------------Hh-hC-----
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SK-AG----- 381 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~--------------a~-~G----- 381 (620)
.++++++++.|+ +..+ ++ |.+.+| ++++|+||||+||||||++| |+..+- .. .+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 466789999997 4334 67 999999 99999999999999999999 664320 00 00
Q ss_pred ------ccccCCCCCCccHHHH---HHHHcCCchh----------hccccccchHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 007057 382 ------LYLPAKNHPRLPWFDL---ILADIGDHQS----------LEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 382 ------~~vp~~~~~~l~~~d~---i~~~ig~~~~----------~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~ 442 (620)
.++++.. .+...+ .+..++..+. +-..++.||+||++++++ +.+|.+ |+
T Consensus 123 ~~~~~v~~~~~~~---~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 123 TLSKCVLVVTTSD---RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RG 190 (347)
T ss_dssp HHTTEEEEEECTT---SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BT
T ss_pred hhhceEEEEECCC---CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------cc
Confidence 1112111 111121 1111111111 115789999999767777 566666 99
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCc-----EEEEEccChhHHhhccccceeeCceEEEec
Q 007057 443 GTDPSEGVALATSILQYLRD--RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 443 glD~~~~~~l~~all~~l~~--~~~-----~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
|+||.....+.. +++.+.+ .|. ||+++|||++ ..+|+++..+.+|++..+.
T Consensus 191 Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 191 GFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp TBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred CCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 999999999988 6776764 466 8899999998 7789999999999998763
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.48 E-value=2e-16 Score=164.32 Aligned_cols=139 Identities=11% Similarity=0.006 Sum_probs=98.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCC--------CCcc--
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH--------PRLP-- 393 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~--------~~l~-- 393 (620)
|+++||++.|+ ..+ ++++++++| ++++|+||||||||||+++| |++ -.++-.++|+... ..+.
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~G-e~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~~ 177 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKK-NCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAALV 177 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTC-SEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEEE
T ss_pred EEEEEEEEEcC-hhhhccceEEecCC-CEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhccC
Confidence 56788999997 444 999999999 99999999999999999999 765 1112234555431 0111
Q ss_pred -----HHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007057 394 -----WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 468 (620)
Q Consensus 394 -----~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vl 468 (620)
.....+..+ +.+.++ ...|||||+|+ +++++.+|++|| |++||+.....+..
T Consensus 178 ~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~~-------------- 234 (305)
T 2v9p_A 178 DDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYLY-------------- 234 (305)
T ss_dssp EEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGGG--------------
T ss_pred ccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------
Confidence 122333332 222333 67999999977 888999999999 99999988776642
Q ss_pred EEccChhHHhhccccceeeCceEEEe
Q 007057 469 VTTHYADLSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 469 i~TH~~~l~~~~~~~~~~~~g~~~~~ 494 (620)
.||+......||++ .+.+|++...
T Consensus 235 -ltH~~~~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 235 -LHSRVQTFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp -GTTTEEEEECCCCC-CCC---CCCC
T ss_pred -HhCCHHHHHhCCEE-EEeCCEEEEe
Confidence 18998877889999 9999987643
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.47 E-value=2.5e-15 Score=158.23 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=91.7
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCch
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ 406 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~ 406 (620)
++++++ | ..+ ++++.+.+| ++++|+|||||||||||+++ .|.+.|.++...+.-.+ .+...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l--------~g~~~~~~g~i~i~~~~----e~~~~- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSI--------MEFIPKEERIISIEDTE----EIVFK- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHT-CCEEEEESTTSCHHHHHHHG--------GGGSCTTSCEEEEESSC----CCCCS-
T ss_pred cCchhh-H--HHHHhhhhhhccCC-CEEEEECCCCCCHHHHHHHH--------hCCCcCCCcEEEECCee----ccccc-
Confidence 445555 5 224 889999999 99999999999999999999 67666655522111000 01111
Q ss_pred hhccccccch-HHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccc
Q 007057 407 SLEQNLSTFS-GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (620)
Q Consensus 407 ~~~~~~s~lS-gg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~ 484 (620)
.....++-++ ||++ +.++++++..+|+++|+|||++. .+.. +++.+...+.++|+|||+.+....++++.
T Consensus 214 ~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 214 HHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------EAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred cchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHH-HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 0112222232 6787 57888899999999999999982 1233 34445543447999999998778888887
Q ss_pred eeeCc
Q 007057 485 RFENA 489 (620)
Q Consensus 485 ~~~~g 489 (620)
.+.+|
T Consensus 286 ~l~~g 290 (330)
T 2pt7_A 286 NMSSS 290 (330)
T ss_dssp HHHHT
T ss_pred ehhcC
Confidence 77655
No 84
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.43 E-value=3.8e-13 Score=125.31 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=67.4
Q ss_pred hhccccccchHHHHH-HHHH------HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 407 SLEQNLSTFSGHISR-IVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 407 ~~~~~~s~lSgg~kr-l~~i------~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
..++++++|||||+| ++++ ++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++..+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDA 128 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHh
Confidence 357889999999995 6554 56889999999999999999999999998 455566567899999999988889
Q ss_pred cccccee
Q 007057 480 KDKDTRF 486 (620)
Q Consensus 480 ~~~~~~~ 486 (620)
|++++.+
T Consensus 129 ~d~ii~l 135 (148)
T 1f2t_B 129 ADHVIRI 135 (148)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 9998887
No 85
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.42 E-value=1.3e-13 Score=135.74 Aligned_cols=143 Identities=14% Similarity=0.126 Sum_probs=82.1
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC------ccccCCCCCCccHHHHHHHHcCCch-hhccc---ccc
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG------LYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST 414 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G------~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~s~ 414 (620)
-+++| ++++|+||||||||||++++ |++.+-...| .++..........+..++..++... .+..+ ...
T Consensus 21 gi~~G-~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 21 GIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 47789 99999999999999999999 4333211111 1222211111112334555555432 11111 123
Q ss_pred chHHHH-H-HHHHHHh-------cCCCcEEEEcCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 415 FSGHIS-R-IVDILEL-------VSRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 415 lSgg~k-r-l~~i~~l-------~~~~~LlLLDEpt~glD~~~------------~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
++.+.+ + +..+..+ ..+|+++++|||++++|+.. ...+...+.+...+.|.|+|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344333 2 3333322 45999999999999999841 1255554555445568999999995
Q ss_pred h----h-HHhhccccceeeCc
Q 007057 474 A----D-LSCLKDKDTRFENA 489 (620)
Q Consensus 474 ~----~-l~~~~~~~~~~~~g 489 (620)
. . +..+|+.++.+.++
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 4 3 45677877776653
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.42 E-value=3.4e-14 Score=158.69 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=92.7
Q ss_pred eeeeecCCccc--cccc-eecCCceEEEEEcCCCCcHhHHHHH--H-hhhHHHHhhCc-cccCCCCCCccHHHHHHHHcC
Q 007057 331 SLSKGISDFPV--PIDI-KVECETRVVVITGPNTGGKTASMKT--L-GLASLMSKAGL-YLPAKNHPRLPWFDLILADIG 403 (620)
Q Consensus 331 ~l~~~y~~~~v--~vsl-~i~~g~~~~~I~GpNGsGKSTlLk~--i-Gli~~~a~~G~-~vp~~~~~~l~~~d~i~~~ig 403 (620)
++.+.+++..+ ++++ .+++| ++++|+||||||||||+++ + |+..+- .|. ++-... .... .......+|
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~-~~~~-~~~~~~~~g 91 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEE-TPQD-IIKNARSFG 91 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSS-CHHH-HHHHHGGGT
T ss_pred ccccccCCchhHHHhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeC-CHHH-HHHHHHHcC
Confidence 34443434344 8999 99999 9999999999999999999 4 555431 121 221111 0000 001111111
Q ss_pred Cc------------------hhhccccccchHHHHHHHHHHHh-cCCCcEEEEcCCCC-----CCCHHHHHHHHHHHHHH
Q 007057 404 DH------------------QSLEQNLSTFSGHISRIVDILEL-VSRESLVLIDEIGS-----GTDPSEGVALATSILQY 459 (620)
Q Consensus 404 ~~------------------~~~~~~~s~lSgg~krl~~i~~l-~~~~~LlLLDEpt~-----glD~~~~~~l~~all~~ 459 (620)
.. .....-+..+..+...-..+..+ ..+|.+|+|||||+ ++|+..+..+.. ++..
T Consensus 92 ~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~-ll~~ 170 (525)
T 1tf7_A 92 WDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR-LVAR 170 (525)
T ss_dssp CCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH-HHHH
T ss_pred CChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH-HHHH
Confidence 10 00011122333332222222222 36799999999997 468999888888 7777
Q ss_pred HhcCCcEEEEEccChhH----------HhhccccceeeC
Q 007057 460 LRDRVGLAVVTTHYADL----------SCLKDKDTRFEN 488 (620)
Q Consensus 460 l~~~~~~vli~TH~~~l----------~~~~~~~~~~~~ 488 (620)
+++.|.|+|++||+.+. ..+||+++.+.+
T Consensus 171 l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 171 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 87778999999999874 245999988876
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.41 E-value=4.5e-13 Score=138.23 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=86.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC---ccccCCCCCCccHHHHHHHHc-CC------------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG---LYLPAKNHPRLPWFDLILADI-GD------------ 404 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G---~~vp~~~~~~l~~~d~i~~~i-g~------------ 404 (620)
++++.+.+| ++++|+||||+|||||++++ |.+.+- .| .|+..+. ..-.+...+.... +.
T Consensus 27 ~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 27 DKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE-SVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp HHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS-CHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC-CHHHHHHHHHHHHcCCChhhccccccCC
Confidence 778899999 99999999999999999999 444332 13 1111111 0000001110000 00
Q ss_pred -----------------chhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC---C---CCH-HHHHHHHHHHHHH
Q 007057 405 -----------------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS---G---TDP-SEGVALATSILQY 459 (620)
Q Consensus 405 -----------------~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~---g---lD~-~~~~~l~~all~~ 459 (620)
.-.+...+..+|.++. +...++++..+|++||+|||++ + +|+ .....+...+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0011222245777764 5444777889999999999999 4 344 4555666644433
Q ss_pred HhcCCcEEEEEccCh-----------------------hHHhhccccceeeCceE
Q 007057 460 LRDRVGLAVVTTHYA-----------------------DLSCLKDKDTRFENAAT 491 (620)
Q Consensus 460 l~~~~~~vli~TH~~-----------------------~l~~~~~~~~~~~~g~~ 491 (620)
..+.+.+||++||+. .+..+||.++.+.++..
T Consensus 183 a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 183 AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344589999999995 34568898888876653
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.41 E-value=1.2e-13 Score=143.71 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=83.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------H-hh-CccccCCCCCCcc--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------S-KA-GLYLPAKNHPRLP-- 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a-~~-G~~vp~~~~~~l~-- 393 (620)
++++.+.+| ++++|+|||||||||+++.+ |++.+. + +. ..++|+......+
T Consensus 92 ~l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 688888999 99999999999999999999 776431 0 11 2355655320222
Q ss_pred -HHHHHHH------------HcCCchhhccccccchHHHHHHHHHHHhcCCCc--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~--LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
.++++.. .+|..+..++.+.+|| .++++++++++.+|. +++|| ||+|+|+.... +
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-------~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-------H
Confidence 3344321 1233344455667788 446788888999999 99999 99999997542 2
Q ss_pred HHh-cCCcEEEEEccCh
Q 007057 459 YLR-DRVGLAVVTTHYA 474 (620)
Q Consensus 459 ~l~-~~~~~vli~TH~~ 474 (620)
.+. ..+.++|++||..
T Consensus 241 ~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 241 EFNEVVGITGLILTKLD 257 (302)
T ss_dssp HHHHHTCCCEEEEECCS
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 233 3578999999943
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.40 E-value=1.1e-12 Score=129.07 Aligned_cols=140 Identities=13% Similarity=0.051 Sum_probs=84.9
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcCCch-hh--------cc-----
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SL--------EQ----- 410 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~--------~~----- 410 (620)
.+.+| ++++|+||||+|||||++++ +.+........|+..+. ....+...+..++... .. +.
T Consensus 19 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 19 GIPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp SEETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEecccccc
Confidence 57789 99999999999999999999 33332111112222221 1111112222333210 00 00
Q ss_pred ----ccccchHHHHH-HHHHHHhcCCCc--EEEEcCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEccCh-------
Q 007057 411 ----NLSTFSGHISR-IVDILELVSRES--LVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA------- 474 (620)
Q Consensus 411 ----~~s~lSgg~kr-l~~i~~l~~~~~--LlLLDEpt~gl--D~~~~~~l~~all~~l~~~~~~vli~TH~~------- 474 (620)
.....|.++.+ .........+|+ ++++|||++++ |+.....+...+.+...+.+.++|++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~ 175 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAF 175 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---------
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccc
Confidence 01233667653 333333446899 99999999877 998888888866555456688999999998
Q ss_pred -h-HHhhccccceeeC
Q 007057 475 -D-LSCLKDKDTRFEN 488 (620)
Q Consensus 475 -~-l~~~~~~~~~~~~ 488 (620)
. +..+||.++.+..
T Consensus 176 ~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 176 GFGVEHVADGIIRFRR 191 (235)
T ss_dssp --CHHHHCSEEEEEEE
T ss_pred ccchheeeeEEEEEEE
Confidence 3 6678888877654
No 90
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.39 E-value=7.3e-14 Score=152.35 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=110.6
Q ss_pred eEEEeeeeeecC-Cccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH-------------------------
Q 007057 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (620)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~------------------------- 376 (620)
.++++++++.|+ +..+ ++ |.+.+| ++++|+|||||||||||++| |+..+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 456789999997 4444 78 999999 99999999999999999999 66421
Q ss_pred --HHhhCccccCCCCCCc---cHHHHH------HHHcCCc-hhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 007057 377 --MSKAGLYLPAKNHPRL---PWFDLI------LADIGDH-QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGT 444 (620)
Q Consensus 377 --~a~~G~~vp~~~~~~l---~~~d~i------~~~ig~~-~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~gl 444 (620)
+.+.-.++++.....+ ...+.+ +...+.. ..+-..++.||+|+++++++ +.+|++ |+|+
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~gl 279 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGY 279 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSC
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccC
Confidence 1111235665421111 111221 1111110 11223578999999778777 777777 9999
Q ss_pred CHHHHHHHHHHHHHHHhc---C-Cc-----EEEEEccChhHHhhccccceeeCceEEEec
Q 007057 445 DPSEGVALATSILQYLRD---R-VG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (620)
Q Consensus 445 D~~~~~~l~~all~~l~~---~-~~-----~vli~TH~~~l~~~~~~~~~~~~g~~~~~~ 495 (620)
||.....+.. +++.+.+ . |. |++++|||++ ..+||+...+.+|++..+.
T Consensus 280 D~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 280 PPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp CTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred CHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 9999999988 6666655 3 53 8999999998 7889999999999988763
No 91
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.38 E-value=4.7e-13 Score=137.04 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=80.4
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH----------HhhCccccCCCCCCccHH-H---------------HH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLM----------SKAGLYLPAKNHPRLPWF-D---------------LI 398 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~----------a~~G~~vp~~~~~~l~~~-d---------------~i 398 (620)
-+.+| ++++|+||||+|||||++++ +.+..- .....|+..+.. ...+ . .+
T Consensus 26 gl~~G-~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~--~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 26 NMVAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp TEETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CccCC-CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC--HHHHHHHHHHHHhhcChhhhhhc
Confidence 36788 99999999999999999999 433210 000113332221 1111 1 11
Q ss_pred HHHcCCchhhccccccchHHHHHHHHHHHhcCCCcEEEEcCCCC--CCCHHHH---HHHHHHHHHHHhcCCcEEEEEccC
Q 007057 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS--GTDPSEG---VALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 399 ~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~--glD~~~~---~~l~~all~~l~~~~~~vli~TH~ 473 (620)
+..+++.+..++.+..+|+|+.+. +++++.+|++||+|||++ ++|+... ..+...+.....+.|+|+|++||+
T Consensus 103 ~~~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 103 ADGLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp HHHEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cCceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 233444444566788999998653 345667899999999999 9998543 566664544445668999999999
Q ss_pred hhH
Q 007057 474 ADL 476 (620)
Q Consensus 474 ~~l 476 (620)
...
T Consensus 181 ~~~ 183 (279)
T 1nlf_A 181 SKG 183 (279)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.38 E-value=5.3e-14 Score=143.32 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=76.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcC-Cch-hhccccccchHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGH 418 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~-~~~~~~s~lSgg 418 (620)
+++ +.+| ++++|+|||||||||||+++ |++.+. ..|....... .+.++.+ ...+ ..+ .+.....+|
T Consensus 19 ~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~--~i~~~~~--~~~~~v~q~~~gl~~~~l--- 87 (261)
T 2eyu_A 19 ELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIED--PIEYVFK--HKKSIVNQREVGEDTKSF--- 87 (261)
T ss_dssp HGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEES--SCCSCCC--CSSSEEEEEEBTTTBSCH---
T ss_pred HHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCC--cceeecC--CcceeeeHHHhCCCHHHH---
Confidence 666 7889 99999999999999999999 555432 0122111100 0000000 0000 000 000011233
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 419 ~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
+.+++.+++.+|+++|+|||+ |+.....+. +. ...|.+++++||+.+....+++...+.
T Consensus 88 --~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~-~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 --ADALRAALREDPDVIFVGEMR---DLETVETAL----RA-AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp --HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HH-HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred --HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HH-HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 567777788899999999999 887754433 32 245889999999988777777765543
No 93
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.36 E-value=8.8e-15 Score=152.86 Aligned_cols=153 Identities=7% Similarity=0.042 Sum_probs=98.9
Q ss_pred CeEEEeeeeeecCCccccccce-----------------------ecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHH--
Q 007057 325 SEMTVGSLSKGISDFPVPIDIK-----------------------VECETRVVVITGPNTGGKTASMKTL-GLASLMS-- 378 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v~vsl~-----------------------i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a-- 378 (620)
+.|++++|++.|+...-.+++. +.+| ++++|+||||||||||+|+| |++.+..
T Consensus 42 ~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 42 EQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP-FIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC-EEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred CeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC-EEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 4678899999995211144432 6788 99999999999999999999 7765431
Q ss_pred hhCccccCCCCC---------------C------ccHHHHHHHHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEE
Q 007057 379 KAGLYLPAKNHP---------------R------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (620)
Q Consensus 379 ~~G~~vp~~~~~---------------~------l~~~d~i~~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlL 436 (620)
....++|+.+.. . ...+.+++..++ ....+..+.+||+||+ ++..+++++.+|++||
T Consensus 121 ~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilI 199 (312)
T 3aez_A 121 PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILI 199 (312)
T ss_dssp CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEE
T ss_pred CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEE
Confidence 011244443210 0 012334555555 3333567889999999 4677788999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH--HhhccccceeeC
Q 007057 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFEN 488 (620)
Q Consensus 437 LDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l--~~~~~~~~~~~~ 488 (620)
+|||+..+|+.. ..+.+.-..+|+++|+.++ ..+..+...+.+
T Consensus 200 lDep~~~~d~~~---------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 200 LEGLNVLQTGPT---------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EECTTTTCCCSS---------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ECCccccCCcch---------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 999999998621 0122222356778888763 345555444333
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.35 E-value=7.6e-13 Score=140.49 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=83.8
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----------------------H-hh-CccccCCCCCCcc--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------S-KA-GLYLPAKNHPRLP-- 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----------------------a-~~-G~~vp~~~~~~l~-- 393 (620)
++++++.+| ++++|+|||||||||+++.+ |++.+- + +. ..++|+......+
T Consensus 149 ~l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 678888899 99999999999999999999 766431 0 11 2345654310222
Q ss_pred -HHHHHHH------------HcCCchhhccccccchHHHHHHHHHHHhcCCCc--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 007057 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~--LlLLDEpt~glD~~~~~~l~~all~ 458 (620)
.++++.. ..|..+..++.+++|| .++++++++++.+|. +++|| ||+|+|+.... .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~ 297 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 297 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------H
Confidence 2344321 1233344455667788 446888889999999 99999 99999997542 2
Q ss_pred HHh-cCCcEEEEEccCh
Q 007057 459 YLR-DRVGLAVVTTHYA 474 (620)
Q Consensus 459 ~l~-~~~~~vli~TH~~ 474 (620)
.+. ..+.|+|++||..
T Consensus 298 ~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 298 EFNEVVGITGLILTKLD 314 (359)
T ss_dssp HHHHHTCCCEEEEESCT
T ss_pred HHHHhcCCeEEEEecCc
Confidence 233 3478999999953
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=4.1e-13 Score=128.07 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred ccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC--CccHHHHHHHHcCCchhhccccccchHHHH
Q 007057 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS 420 (620)
Q Consensus 343 vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~--~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k 420 (620)
-++.+.+| +.++|+||||+|||||++++ .+...|..+.. .++ ...++..+. ..++.+..
T Consensus 31 ~~~~~~~g-~~~~l~G~~G~GKTtL~~~i--------~~~~~~~~g~~~~~~~-~~~~~~~~~---------~~~~~~~~ 91 (180)
T 3ec2_A 31 HNFNPEEG-KGLTFVGSPGVGKTHLAVAT--------LKAIYEKKGIRGYFFD-TKDLIFRLK---------HLMDEGKD 91 (180)
T ss_dssp HSCCGGGC-CEEEECCSSSSSHHHHHHHH--------HHHHHHHSCCCCCEEE-HHHHHHHHH---------HHHHHTCC
T ss_pred HhccccCC-CEEEEECCCCCCHHHHHHHH--------HHHHHHHcCCeEEEEE-HHHHHHHHH---------HHhcCchH
Confidence 35667778 89999999999999999999 44343333311 122 222222211 00111110
Q ss_pred HHHHHHHhcCCCcEEEEcCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 421 RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 421 rl~~i~~l~~~~~LlLLDEpt~-glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+ .+...+.+|++|+||||+. ++|+.....+.. +++...+.+.++|++||+.
T Consensus 92 ~--~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T--KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S--HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHHTTCEEEEECCCC
T ss_pred H--HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHHcCCCEEEEcCCC
Confidence 0 1222345899999999995 999998888777 6676776788999999986
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.26 E-value=2.7e-11 Score=118.28 Aligned_cols=140 Identities=19% Similarity=0.111 Sum_probs=84.2
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCch--hhc-cccccchHHH--H
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ--SLE-QNLSTFSGHI--S 420 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~--~~~-~~~s~lSgg~--k 420 (620)
-+++| ++++|+||||+|||||++++.. .......|+..+.......+.++...++... ..+ -.+...++++ +
T Consensus 16 gi~~G-~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 16 GFAPG-VLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp SBCTT-SEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCcCC-EEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 36788 9999999999999999999933 1111123444332112222334444444321 111 1233344443 2
Q ss_pred -HHHHHHHhcCC-CcEEEEcCCCCCCCHHH--------HHHHHHHHHHHHhcCCcEEEEEccChh--------------H
Q 007057 421 -RIVDILELVSR-ESLVLIDEIGSGTDPSE--------GVALATSILQYLRDRVGLAVVTTHYAD--------------L 476 (620)
Q Consensus 421 -rl~~i~~l~~~-~~LlLLDEpt~glD~~~--------~~~l~~all~~l~~~~~~vli~TH~~~--------------l 476 (620)
.+..+++++.+ |++||+|||++++|+.. ...+...+.+...+.+.++|+++|... +
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 35566677765 99999999999999743 233444344433455889999999854 3
Q ss_pred HhhccccceeeC
Q 007057 477 SCLKDKDTRFEN 488 (620)
Q Consensus 477 ~~~~~~~~~~~~ 488 (620)
..+||.++.+..
T Consensus 173 ~~~~d~vi~l~~ 184 (220)
T 2cvh_A 173 GYRCKDILRLDK 184 (220)
T ss_dssp HHTSSEEEEEEE
T ss_pred eecCcEEEEEEE
Confidence 467777766643
No 97
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=1e-11 Score=145.74 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=84.0
Q ss_pred HHHHHcCCch-hhccccccchHHHH-HHHHHHHhcCCCc--EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 007057 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 397 ~i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~~~--LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH 472 (620)
..+..+|+.. ..++.+++|||||+ |+.++++++.+|+ ++||||||+||||.+...|.+ +++.+.+.|.|+|+|||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3566788875 47899999999999 5888899998777 999999999999999999999 66778888999999999
Q ss_pred ChhHHhhcccccee------eCceEEEe
Q 007057 473 YADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 473 ~~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
|+++...||+++.+ .+|.+.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~ 552 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ 552 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence 99977779999999 77887664
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.23 E-value=1.8e-11 Score=143.15 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=83.6
Q ss_pred HHHHcCCch-hhccccccchHHHH-HHHHHHHhcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 398 i~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~--~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.+..+|+.. .+++.+++|||||+ |+.++.+++.+ |.++||||||+||||.+...|.. +++.|.+.|.|||+||||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 367788875 47999999999999 58888888887 48999999999999999999999 677788889999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|.+.+.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~ 592 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAA 592 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEe
Confidence 9977789999998 57777764
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.22 E-value=2.1e-13 Score=134.93 Aligned_cols=134 Identities=13% Similarity=-0.010 Sum_probs=76.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhh--C----------------ccccCCCCCCccHHHHHHH--
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA--G----------------LYLPAKNHPRLPWFDLILA-- 400 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~--G----------------~~vp~~~~~~l~~~d~i~~-- 400 (620)
++||++.+| ++++|+||||||||||+|++ |+.+ ... | .|+|+.. ..|.....
T Consensus 15 ~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ 87 (218)
T 1z6g_A 15 VPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEFP--NYFYFSVSCTTRKKREKEKEGVDYYFIDK----TIFEDKLKNE 87 (218)
T ss_dssp -------CC-CCEEEECSTTSSHHHHHHHHHHHST--TTEEECCCEECSCCCSSCCBTTTBEECCH----HHHHHHHHTT
T ss_pred CCceecCCC-CEEEEECCCCCCHHHHHHHHHhhCC--CcEEEeecccCCCCCcccccCCeEEECCH----HHHHHhhhcc
Confidence 899999999 99999999999999999999 6652 110 0 0111110 11211100
Q ss_pred -H-----c-----CCc-----hhhc-----cccccchHHHHH-HHH-----HHHhcCCCcEEEEcCCCCCCCHHHHHHHH
Q 007057 401 -D-----I-----GDH-----QSLE-----QNLSTFSGHISR-IVD-----ILELVSRESLVLIDEIGSGTDPSEGVALA 453 (620)
Q Consensus 401 -~-----i-----g~~-----~~~~-----~~~s~lSgg~kr-l~~-----i~~l~~~~~LlLLDEpt~glD~~~~~~l~ 453 (620)
. + |.. +.+. --...+|||+++ +++ ++.++.+|++++||||++++|......+.
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 0 0 000 0000 011467999995 555 45678899999999999999988777776
Q ss_pred HHHHHHHhc------CCcEEEEEccChhHH-hhccc
Q 007057 454 TSILQYLRD------RVGLAVVTTHYADLS-CLKDK 482 (620)
Q Consensus 454 ~all~~l~~------~~~~vli~TH~~~l~-~~~~~ 482 (620)
..+.....+ .....|+++|+.+.+ ..+++
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ 203 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKN 203 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHH
Confidence 655433222 356778999987633 33433
No 100
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.21 E-value=2.1e-11 Score=142.91 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=82.0
Q ss_pred HHHcCCch-hhccccccchHHHH-HHHHHHHhcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 399 ~~~ig~~~-~~~~~~s~lSgg~k-rl~~i~~l~~~--~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+|+.. .+++.+++|||||+ |+.++.+++.+ |.++||||||+||||.+...|.. +++.|.+.|.|||+||||+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCEEEEECCCH
Confidence 66778875 47999999999999 48888888887 58999999999999999999999 6777888899999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 007057 475 DLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 475 ~l~~~~~~~~~~------~~g~~~~~ 494 (620)
++...||+++.+ .+|.+.+.
T Consensus 584 ~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 584 DTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp HHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred HHHHhCCEEEEecCccccCCCEEEEe
Confidence 977789999998 46666553
No 101
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.21 E-value=2.9e-11 Score=140.78 Aligned_cols=96 Identities=22% Similarity=0.212 Sum_probs=84.1
Q ss_pred HHHHcCCchh-hccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 398 i~~~ig~~~~-~~~~~s~lSgg~k-rl~~i~~l~~~~--~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.+..+|+... +++.+++|||||+ +++++.+++.+| .++||||||+||||.+...|.. +++.|.+.|.|||++||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCC
Confidence 4667888754 7999999999999 588889999998 4999999999999999999999 777788889999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 007057 474 ADLSCLKDKDTRF------ENAATEFS 494 (620)
Q Consensus 474 ~~l~~~~~~~~~~------~~g~~~~~ 494 (620)
+++...||+++.+ .+|.+.+.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 9977789999998 57777664
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=1.2e-12 Score=133.82 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHHh----------------hCccccCCCCC--CccHHH--------------HHH
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMSK----------------AGLYLPAKNHP--RLPWFD--------------LIL 399 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a~----------------~G~~vp~~~~~--~l~~~d--------------~i~ 399 (620)
.++|+||||||||||||++ |+..+-.. .-.++|+.... .+++.| +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4799999999999999999 76644210 01234443210 111111 111
Q ss_pred HHcCCchhhccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 400 ~~ig~~~~~~~~~s~lSgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
..+...+..+....+|||||+ ++..+++++. +++||||+.|+|+.+.. +++.+.+. .++|++.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccc
Confidence 222224455667889999999 4666666553 99999999999998833 34446655 77777777654
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.20 E-value=3.6e-12 Score=135.37 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=73.1
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcC-CchhhccccccchHHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQSLEQNLSTFSGHISRIV 423 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~~~~~~~s~lSgg~krl~ 423 (620)
...+| .+++|+|||||||||||+++ |++.... .|..+-.+....+.. .. ..+ ..+ .......++.. -+
T Consensus 119 ~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~-~~---~~~~v~q-~~~~~~~~~~~---~~ 188 (356)
T 3jvv_A 119 SDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVH-ES---KKCLVNQ-REVHRDTLGFS---EA 188 (356)
T ss_dssp HHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCC-CC---SSSEEEE-EEBTTTBSCHH---HH
T ss_pred HhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhh-hc---cccceee-eeeccccCCHH---HH
Confidence 55677 79999999999999999999 6554431 111110000011100 00 000 000 00011112211 16
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
+++++..+|+++|+|||+ |+.....+.. +...|.++|+|||+.+....++++..+.
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~-----~~~~G~~vl~t~H~~~~~~~~dRli~l~ 244 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALT-----AAETGHLVFGTLHTTSAAKTIDRVVDVF 244 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHH-----HHHTTCEEEEEESCSSHHHHHHHHHHTS
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHH-----HHhcCCEEEEEEccChHHHHHHHHhhhc
Confidence 677899999999999998 6655333333 3445889999999998767788876653
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.19 E-value=3.7e-12 Score=127.94 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=72.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHH-----HhhCccccCCCC-CCccHHH------------------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----SKAGLYLPAKNH-PRLPWFD------------------ 396 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~-----a~~G~~vp~~~~-~~l~~~d------------------ 396 (620)
++||++.+| .+++|+|||||||||++|++ |++... ++.-.++|+... ..++..+
T Consensus 17 ~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (245)
T 2jeo_A 17 NLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFD 95 (245)
T ss_dssp ------CCS-EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBC
T ss_pred ceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccccc
Confidence 899999999 99999999999999999999 544210 001113444321 1112211
Q ss_pred -----HHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007057 397 -----LILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (620)
Q Consensus 397 -----~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~ 470 (620)
+.+..+ .+.....+..||+|+++ +.. .+++.+|+++|+|||....++. +. + + .+.+++++
T Consensus 96 ~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~----~-~--~~~~i~v~ 161 (245)
T 2jeo_A 96 NDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IR----D-M--FHLRLFVD 161 (245)
T ss_dssp HHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HH----T-T--CSEEEEEE
T ss_pred HHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HH----H-h--cCeEEEEE
Confidence 122211 22334577889999984 433 4667889999999998877753 11 1 1 26799999
Q ss_pred ccCh-hHHh
Q 007057 471 THYA-DLSC 478 (620)
Q Consensus 471 TH~~-~l~~ 478 (620)
||+. .+.+
T Consensus 162 th~~~~~~r 170 (245)
T 2jeo_A 162 TDSDVRLSR 170 (245)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 9973 3543
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.17 E-value=4.5e-12 Score=122.81 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCC---------CCccHH-H------HHHHHcCC--c-----hh
Q 007057 352 RVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH---------PRLPWF-D------LILADIGD--H-----QS 407 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~---------~~l~~~-d------~i~~~ig~--~-----~~ 407 (620)
++++|+||||+|||||++++ |++. - .| +.-.+. ..+++. . ..+..++. . ..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~--~G--i~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~ 76 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-S--SG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECR 76 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-H--TT--CCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-c--CC--EEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccc
Confidence 68999999999999999999 6654 2 33 111110 000000 0 00001110 0 12
Q ss_pred hccccccchHHHHH-HHHHH----HhcCCCcEEEEcC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEE---EEccChhHH
Q 007057 408 LEQNLSTFSGHISR-IVDIL----ELVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAV---VTTHYADLS 477 (620)
Q Consensus 408 ~~~~~s~lSgg~kr-l~~i~----~l~~~~~LlLLDE--pt~glD~~~~~~l~~all~~l~~~~~~vl---i~TH~~~l~ 477 (620)
+.+....+|+|++. +..+. +.+.+|+++|||| |+..+|+....+|.+ .+.....++| .+||+.. .
T Consensus 77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~----~l~~~~~~ilgti~vsh~~~-~ 151 (189)
T 2i3b_A 77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ----TLSTPGTIILGTIPVPKGKP-L 151 (189)
T ss_dssp SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH----HHHCSSCCEEEECCCCCSSC-C
T ss_pred cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH----HHhCCCcEEEEEeecCCCCc-h
Confidence 34456678999984 43333 3588999999999 788899876555544 3333333332 3349864 2
Q ss_pred hhccccceeeCceEE
Q 007057 478 CLKDKDTRFENAATE 492 (620)
Q Consensus 478 ~~~~~~~~~~~g~~~ 492 (620)
.+++++....++++.
T Consensus 152 ~~vd~i~~~~~~~i~ 166 (189)
T 2i3b_A 152 ALVEEIRNRKDVKVF 166 (189)
T ss_dssp TTHHHHHTTCCSEEE
T ss_pred HHHHHHeecCCcEEE
Confidence 345555555666654
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.16 E-value=6.3e-14 Score=137.01 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=85.7
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCC----CCcc------------------HHHHHHHHcC
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----PRLP------------------WFDLILADIG 403 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~----~~l~------------------~~d~i~~~ig 403 (620)
..+| .+++|+|||||||||++|++ |++.+ + ..++++... ..++ .+.+++..++
T Consensus 3 ~~~~-~~i~i~G~~GsGKSTl~~~l~~~~~~--~-i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (211)
T 3asz_A 3 APKP-FVIGIAGGTASGKTTLAQALARTLGE--R-VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALL 78 (211)
T ss_dssp --CC-EEEEEEESTTSSHHHHHHHHHHHHGG--G-EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCc-EEEEEECCCCCCHHHHHHHHHHHhCC--C-eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHH
Confidence 3567 89999999999999999999 66542 1 123333221 1111 1334455566
Q ss_pred CchhhccccccchHHHH-----HHHHHHHhcCCCcEEEEcCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 404 DHQSLEQNLSTFSGHIS-----RIVDILELVSRESLVLIDEIGSG-------TDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 404 ~~~~~~~~~s~lSgg~k-----rl~~i~~l~~~~~LlLLDEpt~g-------lD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
..+.+..+...+|+|++ ++..+..++.+|.++++|||+++ +|+.....+...+.+...+.|.+++.++
T Consensus 79 ~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~ 158 (211)
T 3asz_A 79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVV 158 (211)
T ss_dssp TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 66667778889999974 23344556778888888999999 8998888888866655556678888889
Q ss_pred cCh
Q 007057 472 HYA 474 (620)
Q Consensus 472 H~~ 474 (620)
|+.
T Consensus 159 ~~~ 161 (211)
T 3asz_A 159 AQY 161 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.15 E-value=8.2e-11 Score=124.64 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=78.3
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhh----C--ccccCCCCCCccHHHHHHHHcCCch-hhcccc---
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA----G--LYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL--- 412 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~----G--~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~--- 412 (620)
...+++| ++++|+||||||||||++++ +.+...... | .|+-.........+..++...+... .+..++
T Consensus 125 ~ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 125 GGGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp TSSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred cCCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 4678899 99999999999999999999 443211112 1 2333332111112333444444321 111111
Q ss_pred ccc-hHHHHH-HHHHHHhc-------CCCcEEEEcCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEc
Q 007057 413 STF-SGHISR-IVDILELV-------SRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 413 s~l-Sgg~kr-l~~i~~l~-------~~~~LlLLDEpt~glD~~~------------~~~l~~all~~l~~~~~~vli~T 471 (620)
..+ |.++.+ +..+..++ .+|++||+||||+++|+.. ...+...+.....+.+.++|+++
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 204 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 111 456654 55555555 6899999999999999852 23344434444445688999999
Q ss_pred cChh
Q 007057 472 HYAD 475 (620)
Q Consensus 472 H~~~ 475 (620)
|...
T Consensus 284 h~~~ 287 (349)
T 1pzn_A 284 QVQA 287 (349)
T ss_dssp ECC-
T ss_pred cccc
Confidence 9865
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.09 E-value=2.7e-10 Score=112.87 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=69.4
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH------hhC-ccccCCCCCCccHHHHHHHHcCCch-hhcc---cccc
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS------KAG-LYLPAKNHPRLPWFDLILADIGDHQ-SLEQ---NLST 414 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a------~~G-~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~---~~s~ 414 (620)
-+++| ++++|+||||+|||||++++.....+. ..+ .|+..+.......+.+++..+|... .+.. ....
T Consensus 20 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 20 GIETG-SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp SEETT-SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCC-eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 36788 999999999999999999992211110 011 1222221111112334555565431 1101 1123
Q ss_pred chHHHH-H-HHHHHHh--cCCCcEEEEcCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 415 FSGHIS-R-IVDILEL--VSRESLVLIDEIGSGTDPS-------E-----GVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 415 lSgg~k-r-l~~i~~l--~~~~~LlLLDEpt~glD~~-------~-----~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
++..+. + +..+... ..+|++|++|||++.+|+. . ...+...+.+...+.+.+||+++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 444443 2 2223332 3689999999999999985 2 233444444444456899999999764
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=1.6e-10 Score=107.47 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC---ccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~ 424 (620)
+| +.++|+||||+|||||++++ +.+.. .| .|++..... ..
T Consensus 35 ~g-~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~------------------~~-------------- 78 (149)
T 2kjq_A 35 HG-QFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMP------------------LT-------------- 78 (149)
T ss_dssp CC-SEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSC------------------CC--------------
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhh------------------HH--------------
Confidence 67 89999999999999999999 33321 12 122222100 00
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEccC
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHY 473 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~-vli~TH~ 473 (620)
.++.++++|+||||+. +++.....+.. +++.+.+.|.+ +|++||.
T Consensus 79 --~~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 --DAAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp --GGGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTCCEEEEEESS
T ss_pred --HHHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCCcEEEEECCC
Confidence 2356799999999998 55555666766 66767776777 8888885
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.04 E-value=1.2e-10 Score=112.79 Aligned_cols=132 Identities=16% Similarity=0.062 Sum_probs=78.0
Q ss_pred EEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---HHhhCc-------------cccC-CC
Q 007057 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---MSKAGL-------------YLPA-KN 388 (620)
Q Consensus 327 l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---~a~~G~-------------~vp~-~~ 388 (620)
++++|+++.|+. .+-.++.+.+| ..++|+|+||+|||||++.+ |.... -...|. .+-. .|
T Consensus 4 l~~~~~~~~~~~-~~l~~~~~~~~-~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G 81 (210)
T 1pui_A 4 LNYQQTHFVMSA-PDIRHLPSDTG-IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81 (210)
T ss_dssp -------CEEEE-SSGGGSSCSCS-EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCC
T ss_pred hhhhhhhheeec-CCHhHCCCCCC-cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcC
Confidence 678999999974 34233889999 89999999999999999999 54300 000110 0000 00
Q ss_pred CC-------------------------------------CccHHH----HHHHHcCCchh-hccccccchHHHHH--HHH
Q 007057 389 HP-------------------------------------RLPWFD----LILADIGDHQS-LEQNLSTFSGHISR--IVD 424 (620)
Q Consensus 389 ~~-------------------------------------~l~~~d----~i~~~ig~~~~-~~~~~s~lSgg~kr--l~~ 424 (620)
.. .....+ ..+...+.... +..+...+|+|+++ +..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~ 161 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 161 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHH
Confidence 00 000000 11122232221 24567788999884 466
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l 460 (620)
+++++.++.++++||||+++|+.....+...+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 162 VREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 777888888889999999999999999998666644
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.03 E-value=1.5e-11 Score=127.74 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=60.3
Q ss_pred eeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hh-hHHHH---------------hhCccccCCCCC
Q 007057 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-ASLMS---------------KAGLYLPAKNHP 390 (620)
Q Consensus 330 ~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gl-i~~~a---------------~~G~~vp~~~~~ 390 (620)
.||++.|+++.+ +++|.| +|+||||+|||||++++ |. +.+-. ..-.++++....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE-------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE-------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 478889987766 777665 89999999999999997 54 22110 000122221100
Q ss_pred --CccHHH------H---------HHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCC-CCHHHHHH
Q 007057 391 --RLPWFD------L---------ILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSG-TDPSEGVA 451 (620)
Q Consensus 391 --~l~~~d------~---------i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~g-lD~~~~~~ 451 (620)
.+.++| . +... +.+..+..+..+|||++| +..++++ -++++||||++ +|+...
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH----CCFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEECSSSSSCCHHHH--
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeecCcccCCCHHHH--
Confidence 011100 0 0000 011122556677777764 2222222 29999999985 999873
Q ss_pred HHHHHHHHHhcC-CcEEEEEccChh
Q 007057 452 LATSILQYLRDR-VGLAVVTTHYAD 475 (620)
Q Consensus 452 l~~all~~l~~~-~~~vli~TH~~~ 475 (620)
. +++.+... +.++|+++||+.
T Consensus 147 --~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 --A-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp --H-HHHHHTTTSCEEEEECCGGGS
T ss_pred --H-HHHHHHhcCCEEEEEEeCCCC
Confidence 2 44445543 668899999973
No 112
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.01 E-value=8.4e-10 Score=105.29 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=63.0
Q ss_pred hccccccchHHHHH-HHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccc
Q 007057 408 LEQNLSTFSGHISR-IVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (620)
Q Consensus 408 ~~~~~s~lSgg~kr-l~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~ 482 (620)
..+.++.|||||++ ++++++++ .+|+++||||||+|||+.....+.. ++..+.+ +.++|++||+..+...|++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~ 135 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADK 135 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCE
Confidence 34678899999994 77777775 5679999999999999999999998 4555554 4689999999888888998
Q ss_pred ccee
Q 007057 483 DTRF 486 (620)
Q Consensus 483 ~~~~ 486 (620)
++.+
T Consensus 136 i~~v 139 (173)
T 3kta_B 136 IIGV 139 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 113
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.99 E-value=3.9e-10 Score=125.57 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=69.3
Q ss_pred ccccccc-hHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccc
Q 007057 409 EQNLSTF-SGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (620)
Q Consensus 409 ~~~~s~l-Sgg~k-rl~~i~~l~~~~--~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~ 484 (620)
.++++.| ||||+ +++++++++.+| +++||||||+|||+.....+.. ++..+.+ +.+||++||++++..+||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence 3678888 99999 588889999999 9999999999999999999999 5555666 789999999999888899999
Q ss_pred eeeCc
Q 007057 485 RFENA 489 (620)
Q Consensus 485 ~~~~g 489 (620)
.+.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88655
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.98 E-value=5.2e-11 Score=126.73 Aligned_cols=143 Identities=9% Similarity=-0.033 Sum_probs=80.3
Q ss_pred cccceecC--CceEEEEEcCCCCcHhHHHHHH-hhhHHHH--hhCc-ccc----CCCC-CCccHHHHHHH----------
Q 007057 342 PIDIKVEC--ETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGL-YLP----AKNH-PRLPWFDLILA---------- 400 (620)
Q Consensus 342 ~vsl~i~~--g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a--~~G~-~vp----~~~~-~~l~~~d~i~~---------- 400 (620)
.+++.+.+ | +.++|+||||||||||+|+| |+..+.. ..|. +++ .... ....-+.++..
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 57788888 9 99999999999999999999 6654321 0011 111 0000 00000111110
Q ss_pred Hc------CCchhhccccccchHHHHH-HHHHHH-hcCCCcEEEEcC---CC------CCCCHHHHHHHHHHHHHHHhcC
Q 007057 401 DI------GDHQSLEQNLSTFSGHISR-IVDILE-LVSRESLVLIDE---IG------SGTDPSEGVALATSILQYLRDR 463 (620)
Q Consensus 401 ~i------g~~~~~~~~~s~lSgg~kr-l~~i~~-l~~~~~LlLLDE---pt------~glD~~~~~~l~~all~~l~~~ 463 (620)
.+ +..+.....+...|+|+++ ..+... ...+|++++||| |+ .++|+..+..++.++.+.+.+.
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 00 0111112223344555443 322332 346899999999 65 5889999999999776655555
Q ss_pred CcEEEEEccChhHHhhccccce
Q 007057 464 VGLAVVTTHYADLSCLKDKDTR 485 (620)
Q Consensus 464 ~~~vli~TH~~~l~~~~~~~~~ 485 (620)
+.++|++||.....++++....
T Consensus 319 ~~~ililde~~~~~r~~~~i~~ 340 (365)
T 1lw7_A 319 KVPYIEIESPSYLDRYNQVKAV 340 (365)
T ss_dssp GCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHH
Confidence 7889999987555566655443
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.6e-10 Score=125.13 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=68.6
Q ss_pred CeEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC--CC---------
Q 007057 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--PR--------- 391 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~--~~--------- 391 (620)
+.+.++||++.|++..+ +++|+| +|+||||+|||||++++ +|...|..+. ..
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I-------~lvG~sGaGKSTLln~L--------~g~~~~~~~~~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL-------MVVGESGLGKSTLINSL--------FLTDLYSPEYPGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE-------EEECCTTSSHHHHHHHH--------TTCCCCCCCCCSCC-----CCEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE-------EEECCCCCcHHHHHHHH--------hCCCCCCCCCCCcccCCccceee
Confidence 35788999999987666 777765 89999999999999999 4443321110 00
Q ss_pred --ccH-H--HHHH------HHcCCchhhc-----ccc-----ccchHHHH-HHHHHHHhcCCCc---EEEEcCCC-CCCC
Q 007057 392 --LPW-F--DLIL------ADIGDHQSLE-----QNL-----STFSGHIS-RIVDILELVSRES---LVLIDEIG-SGTD 445 (620)
Q Consensus 392 --l~~-~--d~i~------~~ig~~~~~~-----~~~-----s~lSgg~k-rl~~i~~l~~~~~---LlLLDEpt-~glD 445 (620)
+++ + +.++ ...|.....+ ..+ ..|+.+++ ++.++++++.+|. +|++|||| .|+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 000 0 0000 0001100000 000 12333343 2445566788999 99999999 6999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
+.+.. +++.+.. +..+|+|.|-.+
T Consensus 155 ~~d~~-----~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 155 PLDIE-----FMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHHH-----HHHHHTT-TSEEEEEEESTT
T ss_pred HHHHH-----HHHHHhc-cCcEEEEEEccc
Confidence 98742 3444554 566666665543
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.97 E-value=1e-10 Score=124.96 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=71.3
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcC-Cch-hhccccccchHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRI 422 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~-~~~~~~s~lSgg~krl 422 (620)
.+.+| ++++|+|||||||||+|+++ |++.... .|..+-.+....+.. . ..++ ..+ .+......|++
T Consensus 132 ~~~~g-~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~~-~---~~~~~v~Q~~~g~~~~~~~~----- 200 (372)
T 2ewv_A 132 CHRKM-GLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVF-K---HKKSIVNQREVGEDTKSFAD----- 200 (372)
T ss_dssp TTSSS-EEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCSHH-----
T ss_pred hhcCC-CEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhhh-c---cCceEEEeeecCCCHHHHHH-----
Confidence 36788 89999999999999999999 5544320 122111110011100 0 0000 000 01113455643
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccccee
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~ 486 (620)
.+..++..+|+++++|||+ |+.....+ ++. ...|.+++.++|+.+....+++...+
T Consensus 201 ~l~~~L~~~pd~illdE~~---d~e~~~~~----l~~-~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR---DLETVETA----LRA-AETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHH-HTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHhhhCcCEEEECCCC---CHHHHHHH----HHH-HhcCCEEEEEECcchHHHHHHHHHHh
Confidence 4455677899999999999 76553332 332 24578899999998776777765443
No 117
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.96 E-value=1.4e-10 Score=131.56 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.7
Q ss_pred cCCCcEEEEcCC------CCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccChhH
Q 007057 429 VSRESLVLIDEI------GSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL 476 (620)
Q Consensus 429 ~~~~~LlLLDEp------t~glD~~~~~~l~~all~~l~~~-~~~vli~TH~~~l 476 (620)
...|+|+|+||| |+|+|+.....+...+.+++.+. +.+++++||+.++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 357999999999 99999999989888666655544 5577899999763
No 118
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.83 E-value=8.6e-10 Score=114.59 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=65.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH-hhhHHH------------------------HhhC-ccccCCCCCCcc---HHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL-GLASLM------------------------SKAG-LYLPAKNHPRLP---WFDLIL 399 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~------------------------a~~G-~~vp~~~~~~l~---~~d~i~ 399 (620)
+| ++++|+|||||||||+++.+ |++.+. .+.+ .++++.. ...+ .++.+.
T Consensus 101 ~g-~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~-~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE-GTDSAALAYDAVQ 178 (304)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT-TCCHHHHHHHHHH
T ss_pred CC-eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHH
Confidence 46 89999999999999999999 665431 0111 2455543 1122 233332
Q ss_pred H---H---------cCCchhhccccccchHHHHHHHHHHHhcCCCc--EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 007057 400 A---D---------IGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (620)
Q Consensus 400 ~---~---------ig~~~~~~~~~s~lSgg~krl~~i~~l~~~~~--LlLLDEpt~glD~~~~~~l~~all~~l~~~~~ 465 (620)
. . .|..+.....++.+| .++++++++++.+|. ++.|| |+++.+ +...+..+....+.
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs--~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~ 249 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELK--KVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGL 249 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHH--HHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCC
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHH--HHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCC
Confidence 1 0 111122222334444 235777788999999 55555 444443 33322222223378
Q ss_pred EEEEEccChhH
Q 007057 466 LAVVTTHYADL 476 (620)
Q Consensus 466 ~vli~TH~~~l 476 (620)
++|++||+.+.
T Consensus 250 t~iivTh~d~~ 260 (304)
T 1rj9_A 250 TGVIVTKLDGT 260 (304)
T ss_dssp SEEEEECTTSS
T ss_pred cEEEEECCccc
Confidence 99999998543
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.82 E-value=3.6e-09 Score=104.72 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=62.5
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCcc-c----cCCCC-CCcc-------HHHHHHHHcCCchhhcc
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-L----PAKNH-PRLP-------WFDLILADIGDHQSLEQ 410 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~-v----p~~~~-~~l~-------~~d~i~~~ig~~~~~~~ 410 (620)
-..++| ++++|+||||||||||+|++ |+..+-.-.|.. + |..+. ..+. .|......-...+.+.-
T Consensus 11 ~~~~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356789 99999999999999999999 665420001110 0 10000 0011 12221110000111110
Q ss_pred ccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH
Q 007057 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (620)
Q Consensus 411 ~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l 476 (620)
. ..+.|--+ ..+...+..+.++||| +|+.....+...+. .+.+|+++||+++.
T Consensus 90 ~-~~~yg~~~--~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~ 142 (219)
T 1s96_A 90 F-GNYYGTSR--EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIE 142 (219)
T ss_dssp T-TEEEEEEH--HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHH
T ss_pred H-hccCCCCH--HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHH
Confidence 0 01111001 1234455668999999 99999888877332 47899999999873
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.82 E-value=3.8e-10 Score=106.05 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=45.2
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCcc
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~ 393 (620)
..++++.|++..+ ++||++.+| ++++|+||||||||||+|++ +|.. |.+|.+.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l--------~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGM--------LQGI-GHQGNVKSP 66 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHH--------HHHT-TCCSCCCCC
T ss_pred CHHHHHHHHHHHHHhccccccCCC-CEEEEECCCCCCHHHHHHHH--------HHhC-CCCCeEEEC
Confidence 3567888876555 899999999 99999999999999999999 7776 777654443
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=3.5e-09 Score=114.45 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=85.5
Q ss_pred EEEeeeeeecCCccc-cccceecCCceE--EEEEcCCCCcHhHHHHHH-hhhH---HHH--------hhCccccCCCCC-
Q 007057 327 MTVGSLSKGISDFPV-PIDIKVECETRV--VVITGPNTGGKTASMKTL-GLAS---LMS--------KAGLYLPAKNHP- 390 (620)
Q Consensus 327 l~~~~l~~~y~~~~v-~vsl~i~~g~~~--~~I~GpNGsGKSTlLk~i-Gli~---~~a--------~~G~~vp~~~~~- 390 (620)
+++.+ +++|++.++ ++|+++.+| ++ ++|+||||+||||||++| |+.. ... +...++|+....
T Consensus 17 l~~~~-~~~y~~~~L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLPDQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--CHHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCeecCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 44555 778876546 899999999 89 999999999999999999 6531 010 011234443210
Q ss_pred -------------Ccc--------------HHHHHHHHc-CCchh----hccc----c---ccchHHHH--HHHHHHHhc
Q 007057 391 -------------RLP--------------WFDLILADI-GDHQS----LEQN----L---STFSGHIS--RIVDILELV 429 (620)
Q Consensus 391 -------------~l~--------------~~d~i~~~i-g~~~~----~~~~----~---s~lSgg~k--rl~~i~~l~ 429 (620)
.+. -++..+... +.... .+.. + ...+.|.. .+.++..+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 000 011122222 22111 1111 1 01112222 356666677
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.+.++|++|+|+..+.+.+...+...+.+.+...|..++.+|.+-
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 889999999999999999999998877777888888888877653
No 122
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.78 E-value=1.2e-08 Score=110.86 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=65.2
Q ss_pred ccccccchHHHHH-HHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcccc
Q 007057 409 EQNLSTFSGHISR-IVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (620)
Q Consensus 409 ~~~~s~lSgg~kr-l~~i~~l~----~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~ 483 (620)
.++++.|||||++ ++++++++ .+|+++|||||+++||+.....+.. ++..+...+.++|++||+..+...|+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEE
Confidence 4667899999995 77778777 6899999999999999999999998 4555555577999999998877889988
Q ss_pred ceee
Q 007057 484 TRFE 487 (620)
Q Consensus 484 ~~~~ 487 (620)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 123
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.76 E-value=1.2e-08 Score=108.68 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred cccccchHHHHH-HHH------HHHhcCC-CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhcc
Q 007057 410 QNLSTFSGHISR-IVD------ILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (620)
Q Consensus 410 ~~~s~lSgg~kr-l~~------i~~l~~~-~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~ 481 (620)
.+++.+||||++ +++ +++++.+ |+++||||||+|||+.....+... +..+.. +.+||+|||+.++..+|+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKS-IPQMIIITHHRELEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCS-CSEEEEEESCGGGGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhcc-CCeEEEEEChHHHHhhCC
Confidence 567899999995 533 3456788 999999999999999999999984 444543 468999999998888899
Q ss_pred ccceee
Q 007057 482 KDTRFE 487 (620)
Q Consensus 482 ~~~~~~ 487 (620)
+++.+.
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887775
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.75 E-value=1.7e-08 Score=108.64 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-hhC------ccccCCCCCCccHHHHHHHHcCCchh-hcc---cccc
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAG------LYLPAKNHPRLPWFDLILADIGDHQS-LEQ---NLST 414 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-~~G------~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~---~~s~ 414 (620)
-|.+| ++++|+||||+|||||++++.+..... ..| .|+-.+.......+.++...+|.... +.. ....
T Consensus 174 GI~~G-ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 174 GVETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp SEETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CcCCC-cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 35688 999999999999999999773221110 011 23322221111223445666775321 111 1122
Q ss_pred chHHH-HH-HHHHHH--hcCCCcEEEEcCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 415 FSGHI-SR-IVDILE--LVSRESLVLIDEIGSGTDPSEG------------VALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 415 lSgg~-kr-l~~i~~--l~~~~~LlLLDEpt~glD~~~~------------~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
++... .. +..+.. ...+|++|++|||++.+|+... ..+...+.+...+.+.+||++||..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 23322 22 222222 2357999999999999986432 3344534443345589999999983
No 125
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=1.8e-08 Score=105.83 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=34.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
..+|.++|+|||++ +|+....+|.. +++... .+.++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHST-TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhc-CCCEEEEEeCCHH
Confidence 55889999999999 99998888877 444433 3578999999975
No 126
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.68 E-value=1.1e-07 Score=98.26 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH-hhhHH-HHhhCccccCCCCCCccHHHHHHH---HcCCchhhccccccchHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL-GLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV 423 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i-Gli~~-~a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~s~lSgg~krl~ 423 (620)
+| ++++|+||||+||||+++.+ +.+.. ..+.-.++.++. ......+++-. ..|..... ..+... +.
T Consensus 104 ~g-~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~-----~~~~~~--l~ 174 (296)
T 2px0_A 104 HS-KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPLEV-----CYTKEE--FQ 174 (296)
T ss_dssp CS-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCCCB-----CSSHHH--HH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCeEe-----cCCHHH--HH
Confidence 56 89999999999999999999 33332 111123455543 23334443322 22322111 122222 23
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCc-EEEE-EccChh-HHhhccccceeeCceEEEe
Q 007057 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVG-LAVV-TTHYAD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~--~~~-~vli-~TH~~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.+++.+.+++++|+| |.|+|+.....+.. +.+.+.. ... ++++ +||... +..+++....+..+.+.+.
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 333345889999999 88899876554444 4443331 122 3344 489865 6677776655555666654
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.67 E-value=3.6e-09 Score=112.51 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=73.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccc------
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTF------ 415 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~l------ 415 (620)
++++.+.+| ++++|+||||||||||++++ .|.+.|..+...+.-.. .+.... ....++.+
T Consensus 167 ~l~~~i~~G-~~i~ivG~sGsGKSTll~~l--------~~~~~~~~g~I~ie~~~----e~~~~~-~~~~v~~v~~q~~~ 232 (361)
T 2gza_A 167 FLRRAVQLE-RVIVVAGETGSGKTTLMKAL--------MQEIPFDQRLITIEDVP----ELFLPD-HPNHVHLFYPSEAK 232 (361)
T ss_dssp HHHHHHHTT-CCEEEEESSSSCHHHHHHHH--------HTTSCTTSCEEEEESSS----CCCCTT-CSSEEEEECC----
T ss_pred HHHHHHhcC-CEEEEECCCCCCHHHHHHHH--------HhcCCCCceEEEECCcc----ccCccc-cCCEEEEeecCccc
Confidence 789999999 99999999999999999999 67666655422211000 001000 00111111
Q ss_pred ---hHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhhccccceee
Q 007057 416 ---SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (620)
Q Consensus 416 ---Sgg~k-rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~~~~~~~~~ 487 (620)
++++. +-.+..++...|+.+++||+.. ..... +++.+.....+++.++|.......++++..+.
T Consensus 233 ~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 233 EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMV 300 (361)
T ss_dssp ------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHH
Confidence 13333 2333345667899999999975 12223 34444443446799999977666666655543
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.66 E-value=2.5e-08 Score=105.82 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=65.7
Q ss_pred ccccc-cchHHHHH-HHHHHHhc---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH
Q 007057 409 EQNLS-TFSGHISR-IVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (620)
Q Consensus 409 ~~~~s-~lSgg~kr-l~~i~~l~---------~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~ 477 (620)
+++++ .+|+||+| ++++++++ .+|+++||||||++||+..+..+...+ ..+ +.|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l-~~~---~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA-ASV---PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH-HHS---SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH-Hhc---CcEEEEEEec-cc-
Confidence 45677 89999995 88888888 899999999999999999999998844 333 2688999995 33
Q ss_pred hhccccceeeCceEEEe
Q 007057 478 CLKDKDTRFENAATEFS 494 (620)
Q Consensus 478 ~~~~~~~~~~~g~~~~~ 494 (620)
.+++++.+.+|++...
T Consensus 333 -~~~~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPV 348 (359)
T ss_dssp -TCSEEEEEETTEEEEC
T ss_pred -cCCEEEEEECCEEEec
Confidence 8899999999988654
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.56 E-value=3.3e-07 Score=90.56 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEccChhH---------Hhhccccceee
Q 007057 430 SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYADL---------SCLKDKDTRFE 487 (620)
Q Consensus 430 ~~~~LlLLDEpt~gl--D~~~~~~l~~all~~l~~~~~~vli~TH~~~l---------~~~~~~~~~~~ 487 (620)
.+++++++|+|+... |+.....+...+.+.+.+.+.++|+++|.... ..+||.++.+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEE
Confidence 478999999999887 66455556665777777778999999998642 35666665543
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.52 E-value=5.4e-07 Score=95.27 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=67.3
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhh-hHHHHhhCccccCCCCCCccHHHHHHHHcCCch-hhccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGl-i~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~s~lSgg~krl~~ 424 (620)
+++| +++.|.||||+|||||+..+.. +........|+..+.. +.. .....+|... .+. -....+.++ .+..
T Consensus 58 l~~G-~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~--~~a~~lG~~~~~l~-i~~~~~~e~-~l~~ 130 (349)
T 2zr9_A 58 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP--EYAKKLGVDTDSLL-VSQPDTGEQ-ALEI 130 (349)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH--HHHHHTTCCGGGCE-EECCSSHHH-HHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH--HHHHHcCCCHHHeE-EecCCCHHH-HHHH
Confidence 5678 9999999999999999988832 2211112234444431 221 1244556431 111 011123332 2333
Q ss_pred HHHh--cCCCcEEEEcCCCCCCC----------H---HHH---HHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 425 ILEL--VSRESLVLIDEIGSGTD----------P---SEG---VALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 425 i~~l--~~~~~LlLLDEpt~glD----------~---~~~---~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
+..+ -.+|++|++|+|++.+. + ... ..+...+...+.+.++++|+++|...
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 4333 35699999999999883 2 111 12222243334566899999999753
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.52 E-value=1e-08 Score=102.56 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.1
Q ss_pred cCCCcEEEEc----CCCCCCCHHHHHHHHHHHHH
Q 007057 429 VSRESLVLID----EIGSGTDPSEGVALATSILQ 458 (620)
Q Consensus 429 ~~~~~LlLLD----Ept~glD~~~~~~l~~all~ 458 (620)
+.+|+++++| |||+|+|+.....+...+.+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 8899999999 99999999988888775544
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.49 E-value=3.6e-07 Score=94.38 Aligned_cols=132 Identities=17% Similarity=0.127 Sum_probs=70.1
Q ss_pred eeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHH---HHHHHcCCc
Q 007057 330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFD---LILADIGDH 405 (620)
Q Consensus 330 ~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d---~i~~~ig~~ 405 (620)
+++++.|+...-++++. +| ++++|+||||+||||+++.+ |++......-.++-... ..-.... .+....|+.
T Consensus 80 ~~l~~~~~~~~~~i~~~--~~-~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 80 EALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HHHHHHTTSSCCCCCCC--SS-EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCceeecC--CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeE
Confidence 34556665432356666 77 89999999999999999999 34332111111222211 1111111 222333332
Q ss_pred hhh---ccccccchHHHHHHHHHHHhcCCCcEEEEcCC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 406 QSL---EQNLSTFSGHISRIVDILELVSRESLVLIDEI-GSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 406 ~~~---~~~~s~lSgg~krl~~i~~l~~~~~LlLLDEp-t~glD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
-.. ...+.. ..+.++......+++++|+|+| +.|+|......+.. +...+. ...+++++.
T Consensus 156 ~~~~~~~~~p~~----l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 156 VLEVMDGESPES----IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLG-PDEVLLVLD 219 (295)
T ss_dssp EEECCTTCCHHH----HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHC-CSEEEEEEE
T ss_pred EEEcCCCCCHHH----HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-HhhhcC-CCEEEEEEe
Confidence 110 111111 1233333333478999999999 88999877777766 444332 233444443
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=2.2e-08 Score=108.18 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=80.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHH---------HHhhCccccCCC-----------C-------CCcc
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------MSKAGLYLPAKN-----------H-------PRLP 393 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~---------~a~~G~~vp~~~-----------~-------~~l~ 393 (620)
++++++..+ ..++|+|+|||||||||+++ |.... ....| +++..+ . ..++
T Consensus 149 ~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 149 RLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhh
Confidence 789999999 89999999999999999999 44210 00011 111110 0 0011
Q ss_pred HHHHHHHHcCCch------hh-ccccccchHHHHHH-HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 007057 394 WFDLILADIGDHQ------SL-EQNLSTFSGHISRI-VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (620)
Q Consensus 394 ~~d~i~~~ig~~~------~~-~~~~s~lSgg~krl-~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~ 465 (620)
...+..+...+ ++ ..++..||++++++ .++.+++..|.++++ +++|+... .....+.+.+.+.+.
T Consensus 227 --~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~ 299 (416)
T 1udx_A 227 --LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGL 299 (416)
T ss_dssp --HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTS
T ss_pred --HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCC
Confidence 11111111000 11 56778899999964 455778899999999 99999876 444446666666566
Q ss_pred EEEE-EccChh-HHhhcc
Q 007057 466 LAVV-TTHYAD-LSCLKD 481 (620)
Q Consensus 466 ~vli-~TH~~~-l~~~~~ 481 (620)
++++ ++|..+ +..+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKE 317 (416)
T ss_dssp CEEECCTTTCTTHHHHHH
T ss_pred eEEEEECCCccCHHHHHH
Confidence 6655 445544 554443
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.39 E-value=4.1e-07 Score=95.31 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.4
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH-hhhH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL-GLAS 375 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~ 375 (620)
..+| ++++|+|||||||||+++.+ |++.
T Consensus 126 ~~~g-~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 126 AEKP-YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SCSS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568 99999999999999999999 6654
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.39 E-value=4.1e-08 Score=93.66 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.7
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+.+| ++++|+|||||||||++|++
T Consensus 5 ~i~~g-~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 5 DDLGG-NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp -CCTT-EEEEEEECTTSCHHHHHHHH
T ss_pred CCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 35678 99999999999999999999
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.38 E-value=1.2e-06 Score=90.86 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=56.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHH---HHHHcCCchhhccccccchH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDHQSLEQNLSTFSG 417 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~---i~~~ig~~~~~~~~~s~lSg 417 (620)
++++...+| ++++|+||||+||||+++.+ +.+......-.++.++. ......++ ....+|..- +...|+
T Consensus 96 ~~~~~~~~~-~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~s~ 168 (306)
T 1vma_A 96 KLNVPPEPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV-----ISHSEG 168 (306)
T ss_dssp CCCCCSSSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE-----ECCSTT
T ss_pred CCcccCCCC-eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE-----EecCCc
Confidence 455666677 89999999999999999999 34332111111222221 12223333 333444431 234456
Q ss_pred HHH-HH---HHHHHhcCCCcEEEEcCCCC
Q 007057 418 HIS-RI---VDILELVSRESLVLIDEIGS 442 (620)
Q Consensus 418 g~k-rl---~~i~~l~~~~~LlLLDEpt~ 442 (620)
++. ++ ++..+...+++++|+|+|+.
T Consensus 169 ~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 655 34 44455788999999999986
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.37 E-value=4.2e-09 Score=100.75 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC-hh-HHhhccccceeeCceEEEe
Q 007057 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHY-AD-LSCLKDKDTRFENAATEFS 494 (620)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vli~TH~-~~-l~~~~~~~~~~~~g~~~~~ 494 (620)
.++|+..... .. .+..+...+.++|.+||. ++ ...+|+++. .+|++.++
T Consensus 126 ~~ld~~~~~~-~~-~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 126 EQMGERCLEL-VE-EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp ---CGGGGHH-HH-HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred ccCCHHHHHH-HH-HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 3789877766 55 444555556789999998 65 678888876 77766543
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.32 E-value=1e-06 Score=96.51 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS 375 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~ 375 (620)
+++|++.+| ++++|+||||||||||+++| |++.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhh
Confidence 788889999 99999999999999999999 6654
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.30 E-value=1.4e-07 Score=97.22 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH-hhhHHHH---hhCccccCCCC----------------------------CCccHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH----------------------------PRLPWFD 396 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a---~~G~~vp~~~~----------------------------~~l~~~d 396 (620)
++ .+++|+||+|||||||.+.+ +++.... ..+.+|+++++ ..+..+.
T Consensus 30 ~~-~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 30 CP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp SC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 45 89999999999999999998 5554321 11222233321 0112233
Q ss_pred HHHHHcCCc------h--hhccccccchHHHHH-HHHHHH-hcCCCcEEEEcCCCCCCCHHH
Q 007057 397 LILADIGDH------Q--SLEQNLSTFSGHISR-IVDILE-LVSRESLVLIDEIGSGTDPSE 448 (620)
Q Consensus 397 ~i~~~ig~~------~--~~~~~~s~lSgg~kr-l~~i~~-l~~~~~LlLLDEpt~glD~~~ 448 (620)
+.+..+... . .+...-..+||||.+ +..+.. .+ +|++||+||++.++|+..
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccc
Confidence 344444322 1 122344678999985 444322 23 899999999999999853
No 140
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.26 E-value=4e-07 Score=94.95 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHH-HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 413 STFSGHISRIVDI-LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 413 s~lSgg~krl~~i-~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.++|+|++|+..+ +.++++++++ ||| ..+.. .+..+. .+.+++++||+.
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~-~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHE-RLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHH-HHHHHC-SSSCEEECCSSC
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHH-HHHHhC-CCCeEEEecccC
Confidence 3689999987655 3355777766 777 44554 344444 478999999974
No 141
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=1.2e-05 Score=85.09 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=66.1
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
+++| +++.|+||||+|||||+.++ +.+........|+-.+.. +.. ....++|....--......+..+. +..+
T Consensus 58 i~~G-~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s--~~~--~ra~rlgv~~~~l~i~~~~~~e~~-l~~~ 131 (356)
T 3hr8_A 58 YPRG-RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA--LDP--VYAKNLGVDLKSLLISQPDHGEQA-LEIV 131 (356)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH--HHHHHHTCCGGGCEEECCSSHHHH-HHHH
T ss_pred ccCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc--cch--HHHHHcCCchhhhhhhhccCHHHH-HHHH
Confidence 5678 99999999999999999999 332221111235544331 121 144555654211111122333332 2222
Q ss_pred HH--hcCCCcEEEEcCCCCCCCHHH-------------HHHHH---HHHHHHHhcCCcEEEEEccC
Q 007057 426 LE--LVSRESLVLIDEIGSGTDPSE-------------GVALA---TSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 426 ~~--l~~~~~LlLLDEpt~glD~~~-------------~~~l~---~all~~l~~~~~~vli~TH~ 473 (620)
.. ....++++++|..+.-....+ ...+. ..+.....+.+.++|++.|-
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 22 246789999999877664111 12222 22333344568899999887
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.13 E-value=8.8e-07 Score=87.48 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++||++.+| ++++|+|||||||||+++++
T Consensus 19 ~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 19 PGSMLKSVG-VILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp ---CCEECC-CEEEEECSCC----CHHHHH
T ss_pred CCCcccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 899999999 99999999999999999999
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.11 E-value=1.9e-07 Score=96.93 Aligned_cols=45 Identities=11% Similarity=0.255 Sum_probs=38.3
Q ss_pred CeEEEeeeeeecCCccc-ccccee-------------------cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 325 SEMTVGSLSKGISDFPV-PIDIKV-------------------ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~vsl~i-------------------~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+.++++||++.|+. .+ ++++.+ .+| .+++|+||||||||||++++
T Consensus 36 ~~i~~~~v~~~y~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g-~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP-LSRLLNFYISSNLRRQAVLEQFLGTNGQRIP-YIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp TTCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCC-EEEEEEECTTSSHHHHHHHH
T ss_pred cccchHhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhccCCCCCC-EEEEEECCCCCCHHHHHHHH
Confidence 46788999999952 22 777777 778 99999999999999999999
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.11 E-value=9.5e-06 Score=88.61 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=68.9
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhC---ccccCCCCCCccHHHHHHH-HcCC----------------
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILA-DIGD---------------- 404 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G---~~vp~~~~~~l~~~d~i~~-~ig~---------------- 404 (620)
.-+.+| ++++|.||+|+|||||+..++...... .| .|+-.+. ..-.+..+++. ..|.
T Consensus 198 gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~ 274 (454)
T 2r6a_A 198 SGFQRS-DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM-SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWG 274 (454)
T ss_dssp SSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHH
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHH
Confidence 347789 999999999999999999993332221 12 2222211 11111222211 1111
Q ss_pred -----------chhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCH--------HHHHHHHHHHHHHHhcCC
Q 007057 405 -----------HQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDP--------SEGVALATSILQYLRDRV 464 (620)
Q Consensus 405 -----------~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~--------~~~~~l~~all~~l~~~~ 464 (620)
....-.....+|.++.+ .+..+....++++|++|+++...++ .....+...+.....+.+
T Consensus 275 ~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 275 KLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp HHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 01111123467877764 2222223368999999999987743 222344443333223558
Q ss_pred cEEEEEcc
Q 007057 465 GLAVVTTH 472 (620)
Q Consensus 465 ~~vli~TH 472 (620)
++||+++|
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 89999999
No 145
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.10 E-value=2.5e-07 Score=97.34 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=39.8
Q ss_pred EEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH-hhh
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA 374 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli 374 (620)
++++++++.|+...+ ++++++.+| .+++|+||||||||||++++ |++
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRA-IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCS-EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HeeCCcccccChHHHHHhCCcccCCC-eEEEEECCCCCCHHHHHHHHHHhh
Confidence 456788888865444 899999999 99999999999999999999 443
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.03 E-value=1.1e-05 Score=84.93 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHhHHHHHH-hhhHHHH-hhCccccCCCCC-CccHHHHHHHHcCCchhhccccccchHHHH--HHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL-GLASLMS-KAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGHIS--RIVDILE 427 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i-Gli~~~a-~~G~~vp~~~~~-~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k--rl~~i~~ 427 (620)
.++|+||+|+||||+++.+ +.+.... ..-.++.+.... ....+..++..++... +....+.+.. ++.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999 2221100 001123322211 1234556666665421 1112222222 2333333
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc---CCcEEEEEccChhHH
Q 007057 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVVTTHYADLS 477 (620)
Q Consensus 428 l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~---~~~~vli~TH~~~l~ 477 (620)
...+|.+|+|||+... |+.....|.. +++.+.. .+.++|++||+.++.
T Consensus 122 ~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred hcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEEEEEECCchHH
Confidence 4567889999999876 7766666655 3332333 467889999988643
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.03 E-value=2.1e-06 Score=82.49 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.6
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHH-hhh
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLA 374 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli 374 (620)
|+++.+| ++++|+|||||||||+++++ |+.
T Consensus 1 s~~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKA-NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCC-CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCC-cEEEEECcCCCCHHHHHHHHHhhC
Confidence 3566788 99999999999999999999 543
No 148
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.01 E-value=3.6e-06 Score=97.99 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=77.5
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHh-hCc----cccCCCCCCccHHHHHHHHcCCc--------------hh
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSK-AGL----YLPAKNHPRLPWFDLILADIGDH--------------QS 407 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~-~G~----~vp~~~~~~l~~~d~i~~~ig~~--------------~~ 407 (620)
+..| +.++|+|||||||||++.++-+...... .|. ..|... ......+.+...++.. ..
T Consensus 106 l~~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~-La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 106 YQNN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV-AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH-HHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred HhCC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH-HHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 4556 7999999999999998887722111111 021 123211 0111223333333321 01
Q ss_pred hccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EccChh-HHhhccc
Q 007057 408 LEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVV-TTHYAD-LSCLKDK 482 (620)
Q Consensus 408 ~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~-glD~~~~~~l~~all~~l~~~~~~vli-~TH~~~-l~~~~~~ 482 (620)
....+...+.|+.. .......+.++++||+|||.. ++|......+...+... .....++++ +||+.+ +..+.+.
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhcC
Confidence 23456677889884 444455789999999999995 99987766666645443 223346666 599875 5555543
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.95 E-value=4.3e-06 Score=91.76 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
++||++.+ ++++|+|||||||||||++| +|...|..|.
T Consensus 22 ~vsl~i~~--e~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~ 59 (483)
T 3euj_A 22 ARTFDFDE--LVTTLSGGNGAGKSTTMAGF--------VTALIPDLTL 59 (483)
T ss_dssp EEEEECCS--SEEEEECCTTSSHHHHHHHH--------HHHHCCCTTT
T ss_pred ceEEEEcc--ceEEEECCCCCcHHHHHHHH--------hcCCCCCCCE
Confidence 89999987 79999999999999999999 6666666653
No 150
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=2.3e-05 Score=86.05 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=59.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHH-
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS- 420 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~k- 420 (620)
.+++.++.| ++|+||+|+||||++|.++- +.+... ..++ ..+......+ .++.+
T Consensus 43 ~~g~~~p~g---vLL~GppGtGKT~Laraia~-----~~~~~f-----~~is----------~~~~~~~~~g--~~~~~~ 97 (476)
T 2ce7_A 43 RIGARMPKG---ILLVGPPGTGKTLLARAVAG-----EANVPF-----FHIS----------GSDFVELFVG--VGAARV 97 (476)
T ss_dssp TTTCCCCSE---EEEECCTTSSHHHHHHHHHH-----HHTCCE-----EEEE----------GGGTTTCCTT--HHHHHH
T ss_pred hcCCCCCCe---EEEECCCCCCHHHHHHHHHH-----HcCCCe-----eeCC----------HHHHHHHHhc--ccHHHH
Confidence 455555555 78999999999999999921 112110 0000 0001111111 13333
Q ss_pred HHHHHHHhcCCCcEEEEcCCC----------CCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccChh
Q 007057 421 RIVDILELVSRESLVLIDEIG----------SGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (620)
Q Consensus 421 rl~~i~~l~~~~~LlLLDEpt----------~glD~~~~~~l~~all~~l~----~~~~~vli~TH~~~ 475 (620)
+..+..+....|.+|++||+. .|.|+.....+.. ++..+. ..+..+|.+||..+
T Consensus 98 r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhccCCCCCEEEEEecCChh
Confidence 333445556789999999993 3556655444444 555443 23567889999976
No 151
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.91 E-value=1.9e-06 Score=86.85 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=29.9
Q ss_pred eEEEeee-eeec-CCccc--cccceecC---CceEEEEEcCCCCcHhHHHHHH
Q 007057 326 EMTVGSL-SKGI-SDFPV--PIDIKVEC---ETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 326 ~l~~~~l-~~~y-~~~~v--~vsl~i~~---g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.++++|+ +++| ++..+ ++++++.+ | ++++|+||+||||||+.+.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g-~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNG-RSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTT-CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCC-CEEEEECCCCCCHHHHHHHH
Confidence 5788999 9999 65555 99999999 9 89999999999999999999
No 152
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.81 E-value=2.6e-07 Score=98.97 Aligned_cols=59 Identities=8% Similarity=-0.105 Sum_probs=42.8
Q ss_pred CC--cEEEEcCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEccChh-HHhhccccc-eeeCc-eEE
Q 007057 431 RE--SLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDT-RFENA-ATE 492 (620)
Q Consensus 431 ~~--~LlLLDEpt~glD~~~~~~l~~all~~l-~~~~~~vli~TH~~~-l~~~~~~~~-~~~~g-~~~ 492 (620)
+| ++.++|||+.+.|+........ .++.+ ...|.|++ +|+.. +..+|+++. .+.+| ...
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~-~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~ 203 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI 203 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHH-HHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee
Confidence 67 8889999999999988877776 44445 45455543 99986 668888877 56777 543
No 153
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.79 E-value=4.8e-05 Score=79.99 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=68.9
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-------hhCccccCCCCCCccHHHHHHHHcCCchh--hcc--ccccc
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS--LEQ--NLSTF 415 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~--~~~--~~s~l 415 (620)
+++| +++.|.||+|+|||||+..++....+. ....|+..+.......+.++...+|.... +++ ....+
T Consensus 119 l~~G-~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 119 IESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp BCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 5688 999999999999999999984332111 11124443331111223344555655321 010 01122
Q ss_pred hHHHH-H-HHHHHHhc----CCCcEEEEcCCCCCCCHH--------H----HHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 416 SGHIS-R-IVDILELV----SRESLVLIDEIGSGTDPS--------E----GVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 416 Sgg~k-r-l~~i~~l~----~~~~LlLLDEpt~glD~~--------~----~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
++++. + +..+..++ .++++|++|.++.-..+. + ...+...+.....+.+.+||+++|...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 33322 2 22222222 678999999999876432 1 123333344444456889999999754
No 154
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.77 E-value=1.4e-05 Score=84.40 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCC--C----CCccHHH--H-HHHHcCCchhhccccccchHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--H----PRLPWFD--L-ILADIGDHQSLEQNLSTFSGHISRI 422 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~--~----~~l~~~d--~-i~~~ig~~~~~~~~~s~lSgg~krl 422 (620)
-.++|+|+||+|||||++.+ .|....... . ..+..+. . -+..++.....+.....+++++++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L--------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKAL--------TTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHH--------CSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH--------hCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 57899999999999999999 443211110 0 0001000 0 0001111222344566778888764
Q ss_pred HHHHHhcCCCcEEEEc-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc--cChh
Q 007057 423 VDILELVSRESLVLID-EIGSGTDPSEGVALATSILQYLRDRVGLAVVTT--HYAD 475 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLD-Ept~glD~~~~~~l~~all~~l~~~~~~vli~T--H~~~ 475 (620)
..+.....+.-++++| +++.|+|..+...+...+.... . +..+|++. ||..
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLPFLVVINKIDVA 293 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSCEEEEECCTTTC
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCCEEEEEECcccC
Confidence 4444455677899999 9999999988777766554432 2 45566666 7763
No 155
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.73 E-value=1.6e-06 Score=86.13 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=37.5
Q ss_pred eEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
.|+++|+...|+. ++++.+ ++++|+|||||||||||++| +|...|..|.
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~--~~~~i~GpnGsGKSTll~~i--------~g~~~~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDE--LVTTLSGGNGAGKSTTMAAF--------VTALIPDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHH--HHHHHHSCCSHHHHHHHHHH--------HHHHSCCTTT
T ss_pred EEEEEeeecccCC-----EEEEcC--cEEEEECCCCCCHHHHHHHH--------hcccccCCCe
Confidence 4677788776643 445544 58899999999999999999 7777777763
No 156
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.72 E-value=1.3e-05 Score=84.80 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=60.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH-hhhH-HHH-----hhC-----------ccccCCCC------------CC
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMS-----KAG-----------LYLPAKNH------------PR 391 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~-~~a-----~~G-----------~~vp~~~~------------~~ 391 (620)
++++.+ +| ++++|+||||+|||||++++ |+.. +.. ..| .++|+.+. ..
T Consensus 208 ~L~~~~-~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~ 285 (358)
T 2rcn_A 208 PLEEAL-TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWH 285 (358)
T ss_dssp HHHHHH-TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCC
T ss_pred HHHHhc-CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcC
Confidence 344433 67 89999999999999999999 6554 210 001 23444320 00
Q ss_pred cc------HHHHHHHHcCCchhhccccccchHHHHH-HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Q 007057 392 LP------WFDLILADIGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (620)
Q Consensus 392 l~------~~d~i~~~ig~~~~~~~~~s~lSgg~kr-l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~ 462 (620)
++ .|..++..+|+.+..+....++| |+++ ++++.+ +.+..+......+++.+.+
T Consensus 286 l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~g----------------li~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 286 LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENG----------------AIAETRFENYHRILESMAQ 346 (358)
T ss_dssp CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHT----------------SSCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHHh
Confidence 11 02234555677777788899999 8874 555543 3445566655556665543
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.71 E-value=1.9e-05 Score=85.91 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccH---HHHHHHHcCCchhhccccccchHHHHHHHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---FDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~---~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l 428 (620)
..++|.||+|+|||||++.++-.... . .|......++. ...+...+.. . ........
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~--~---~~~~~v~~v~~~~~~~~~~~~~~~------~---------~~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ--N---EPDLRVMYITSEKFLNDLVDSMKE------G---------KLNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH--H---CCSSCEEEEEHHHHHHHHHHHHHT------T---------CHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--h---CCCCeEEEeeHHHHHHHHHHHHHc------c---------cHHHHHHH
Confidence 57899999999999999999322111 0 01111011111 1111111100 0 01111222
Q ss_pred cC-CCcEEEEcCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 429 VS-RESLVLIDEIGSGTDP-SEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 429 ~~-~~~LlLLDEpt~glD~-~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
.. ++++|++||+..-.+. .....+.. +++.+.+.+..+|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 23 8999999999877764 45556666 5666677788899999974
No 158
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=5.2e-06 Score=89.72 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=33.0
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+.++++++.|+...+ ++ + ..+| .+++|+|||||||||||+++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~g-gii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPH-GIILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSS-EEEEEECSTTSCHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcC-CeEEEECCCCCCHHHHHHHH
Confidence 3456777777755433 44 4 3677 89999999999999999999
No 159
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.69 E-value=1.8e-05 Score=76.73 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.4
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH-hhhH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL-GLAS 375 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i-Gli~ 375 (620)
..+| ++++|+||||||||||+++| |++.
T Consensus 19 ~~~g-~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGR-QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSC-EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578 99999999999999999999 5554
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=1.2e-05 Score=77.75 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH-hhh
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL-GLA 374 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i-Gli 374 (620)
.+| ++++|+||||||||||+|++ |+.
T Consensus 2 ~~g-~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGP-RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357 89999999999999999999 544
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.69 E-value=2.4e-05 Score=73.80 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.+.+| +.+|+|||||||||++++|
T Consensus 19 ~~~~~~~~g--~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 19 KVVIPFSKG--FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp CEEEECCSS--EEEEEECTTSSHHHHHHHH
T ss_pred cEEEecCCC--cEEEECCCCCCHHHHHHHH
Confidence 455666676 8999999999999999999
No 162
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.68 E-value=6.4e-05 Score=78.31 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=69.9
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-------hhCccccCCCCCCccHHHHHHHHcCCchh-h-cc--ccccc
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-L-EQ--NLSTF 415 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~-~~--~~s~l 415 (620)
+++| +++.|.||+|+|||||+..++...... ....|+-.+.......+.+++..+|.... + +. ....+
T Consensus 104 l~~G-~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 104 IETR-TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 5678 899999999999999999984332111 11134433331111223344555665321 0 00 11223
Q ss_pred hHHHH-H-HHHHHHhc---CCCcEEEEcCCCCCCCH--------HHH----HHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 416 SGHIS-R-IVDILELV---SRESLVLIDEIGSGTDP--------SEG----VALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 416 Sgg~k-r-l~~i~~l~---~~~~LlLLDEpt~glD~--------~~~----~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+.++. + +..+..++ .++++|++|.++.-... .++ ..+...+.....+.+++||++.|-.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 44432 2 33444443 67999999999876532 122 2333334443445688999998865
No 163
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.66 E-value=0.00013 Score=78.95 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCc---cccCCCCCCccHHHHHH---HHcCCchhhccccccch-HHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFS-GHISR 421 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~---~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~s~lS-gg~kr 421 (620)
++ .+++++||||+||||++..++.. ++..|. ++.+.. .....++++. ...|..-. ....... ....+
T Consensus 96 ~~-~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~ 169 (433)
T 3kl4_A 96 LP-FIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAK 169 (433)
T ss_dssp SS-EEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCcee--eccccCCHHHHHH
Confidence 35 89999999999999999998322 222332 233332 2223344332 22232111 0000001 11111
Q ss_pred HHHHHHhcCCCcEEEEcCCCC-C--CCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 422 IVDILELVSRESLVLIDEIGS-G--TDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~-g--lD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.++..+...+++++|+|+|+. + .|+.....+.. +...+......+++.+|.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCcc
Confidence 222222346899999999995 5 78877766666 555443333345556665
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=1.7e-05 Score=75.65 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH-hhh
Q 007057 352 RVVVITGPNTGGKTASMKTL-GLA 374 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i-Gli 374 (620)
++++|+|||||||||++|++ |+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999 544
No 165
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.63 E-value=1.9e-05 Score=76.05 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=27.9
Q ss_pred eeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 331 ~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
|++..++.... ..++...+| ++++|+|||||||||++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g-~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKG-CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp ------CCCCHHHHHHHHTSCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCcccccccCHHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 34444443333 556666788 99999999999999999999
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.62 E-value=2.2e-05 Score=75.26 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.2
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++.+| .+++|+|||||||||+++.+
T Consensus 1 m~i~~g-~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 1 MDNEKG-LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp ---CCC-CEEEEECSTTSCHHHHHHHH
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 356788 89999999999999999999
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.61 E-value=3.1e-06 Score=95.79 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.3
Q ss_pred eeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 332 LSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 332 l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++.-||...+ .+++.+..| +.++|+||||+||||+++++
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHH
T ss_pred cceEECchhhHhhccccccCC-CEEEEEeCCCCCHHHHHHHH
Confidence 3344554444 888999999 89999999999999999999
No 168
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=1.6e-05 Score=83.33 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC---ccccCCC-CCCccHHHHHHHHcCCchhhccccccchHHH-H-HHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL-GLASLMSKAG---LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVD 424 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G---~~vp~~~-~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~-k-rl~~ 424 (620)
..++|+||+|+|||||++.+ +.+......+ .++.+.. ......+..++..++... +....+... . ++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHH
Confidence 68999999999999999998 2221110001 1111111 001112333333333211 111222222 2 2333
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEccChhH
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL---RDRVGLAVVTTHYADL 476 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l---~~~~~~vli~TH~~~l 476 (620)
.+.....|.+|++||+....+......+ ..+++.+ ...+.++|++||+..+
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l-~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDIL-YKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHH-HHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHH-HHHhhchhhcCCCeEEEEEEECCCCh
Confidence 3333455889999999765532111222 2244444 2335678999998763
No 169
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=0.00037 Score=73.64 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=65.3
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH-HhhCccccCCCCCCccHHHHHHHHcCCchh-hccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~~s~lSgg~krl~~ 424 (620)
+++| +++.|.||+|+|||||...++..... .....|+..+.. +.. .....+|.... +. -...-+..+. +..
T Consensus 60 l~~G-~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s--~~~--~~a~~~g~~~~~l~-i~~~~~~e~~-~~~ 132 (356)
T 1u94_A 60 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDP--IYARKLGVDIDNLL-CSQPDTGEQA-LEI 132 (356)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH--HHHHHTTCCGGGCE-EECCSSHHHH-HHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--ccH--HHHHHcCCChhhee-eeCCCCHHHH-HHH
Confidence 5678 89999999999999999888332221 112234544431 111 12445554311 10 0001122222 222
Q ss_pred HHHh--cCCCcEEEEcCCCCCCCHHH------------H----HHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 425 ILEL--VSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 425 i~~l--~~~~~LlLLDEpt~glD~~~------------~----~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+..+ ..++++|++|.++.-....+ . ..+...+...+.+.+++||+++|-.
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 2222 36799999999998764211 1 1223334444456788999999864
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.54 E-value=2.8e-05 Score=74.62 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||+|+||||+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.54 E-value=1.7e-05 Score=82.88 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=34.2
Q ss_pred EEEeeeeeecCCccc--cccceecCC------ceEEEEEcCCCCcHhHHHHHH
Q 007057 327 MTVGSLSKGISDFPV--PIDIKVECE------TRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 327 l~~~~l~~~y~~~~v--~vsl~i~~g------~~~~~I~GpNGsGKSTlLk~i 371 (620)
++.++++..||...+ ++++.+..| .+.++|+||||+|||||++++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence 345567777776554 677777543 157899999999999999999
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.54 E-value=0.00062 Score=70.83 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=26.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++|.+.++ ++++|+||||+||||++..+
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHH
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 567777788 99999999999999999999
No 173
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.53 E-value=2.3e-05 Score=86.59 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=25.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++.+.+..+ ..++|.|++||||||+|+++
T Consensus 159 pv~ldL~~~-pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 159 PVVADLAKM-PHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEEEEGGGS-CSEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcccC-ceEEEECCCCCCHHHHHHHH
Confidence 566777777 78999999999999999998
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.53 E-value=0.00012 Score=76.93 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=66.7
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCc---cccCCCCCCccHHHHHHHHc-CCc-hhhccccccchHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS 420 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~---~vp~~~~~~l~~~d~i~~~i-g~~-~~~~~~~s~lSgg~k 420 (620)
-+.+| ++++|.|++|+|||||+..++..... .|. |+.-+. ..-.+..+++... +.. +.+. -..||.++.
T Consensus 42 Gl~~G-~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~--~g~Ls~~e~ 115 (338)
T 4a1f_A 42 GFNKG-SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLE--SGRLDDDQW 115 (338)
T ss_dssp SBCTT-CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHH--HTCCCHHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHh--cCCCCHHHH
Confidence 36688 99999999999999999998443322 232 221111 1112233332221 221 1121 146888887
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cC-CcEEEEEccC
Q 007057 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DR-VGLAVVTTHY 473 (620)
Q Consensus 421 -rl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~-~~~vli~TH~ 473 (620)
++..+...+.+++++|.|+|+. ++.+-.+. ++.+. +. +..+|++-|-
T Consensus 116 ~~l~~a~~~l~~~~l~I~d~~~~--si~~i~~~----ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 116 ENLAKCFDHLSQKKLFFYDKSYV--RIEQIRLQ----LRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHHHHHSCEEEECCTTC--CHHHHHHH----HHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEeCCCCC--cHHHHHHH----HHHHHHhcCCCCEEEEech
Confidence 6777777777889999999864 44433332 33333 33 5566666543
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.49 E-value=4.7e-05 Score=82.39 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=32.5
Q ss_pred eEEEeeeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+.++|+ ++|++.. ++.+..| ++++|+||||+||||+|++|
T Consensus 6 ~l~~~~~-~~~~~~~---~~~~~~~-~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT---KVGFGES-NFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp EEEEESC-SSCCSEE---EEECTTC-SEEEEECSTTSSHHHHHHHH
T ss_pred EEEEeCE-EEECCce---eEEecCC-CEEEEECCCCCCHHHHHHHH
Confidence 3677888 7886532 2456667 89999999999999999999
No 176
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.48 E-value=0.00021 Score=72.58 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.++.| ++|+||||+|||||+|++
T Consensus 38 ~~~l~~~~G---vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 38 ALGLVTPAG---VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp HTTCCCCSE---EEEESSTTSCHHHHHHHH
T ss_pred HcCCCCCCe---EEEECCCCCcHHHHHHHH
Confidence 677888776 899999999999999999
No 177
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.41 E-value=3.6e-05 Score=85.27 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=31.9
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCC
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 388 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~ 388 (620)
.+++.+..| .+++|+|||||||||+|+++ .|...|..+
T Consensus 252 ~l~~~v~~g-~~i~I~GptGSGKTTlL~aL--------~~~i~~~~g 289 (511)
T 2oap_1 252 YLWLAIEHK-FSAIVVGETASGKTTTLNAI--------MMFIPPDAK 289 (511)
T ss_dssp HHHHHHHTT-CCEEEEESTTSSHHHHHHHH--------GGGSCTTCC
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH--------HhhCCCCCC
Confidence 678888999 88999999999999999999 665545443
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.40 E-value=7.6e-05 Score=71.79 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=21.3
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+...+| ++++|+|||||||||++|++
T Consensus 23 ~m~~~~g-~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 23 MMTGEPT-RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -----CC-CEEEEECCTTSCHHHHHHHH
T ss_pred hhcCCCC-cEEEEECCCCCCHHHHHHHH
Confidence 3455678 89999999999999999999
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=7.2e-05 Score=70.82 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| ++++|+||||||||||++.+
T Consensus 4 ~g-~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MR-KTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 46 89999999999999999999
No 180
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.35 E-value=0.00074 Score=73.88 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHhhccccc
Q 007057 545 HRKSELYQSLMEERRKLES--QARTAASLHAEIMDLYREVYTFCIIISHAKRA--FCFTVAIFLKLLPLWS 611 (620)
Q Consensus 545 ~~~e~~~~~le~~~~~le~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 611 (620)
..+++.++.++.+...... ..+++.++.++.+++++++++.+++|++-... -..|.+-.-..+-.|+
T Consensus 397 ~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (468)
T 3pxg_A 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWT 467 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHh
Confidence 3455555555544432211 12467888899999999999999999876543 2344455555555553
No 181
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.33 E-value=0.00035 Score=72.36 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHh----------hC-------ccccCCCCCCccHHHHHHHHcCCchh--
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AG-------LYLPAKNHPRLPWFDLILADIGDHQS-- 407 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~----------~G-------~~vp~~~~~~l~~~d~i~~~ig~~~~-- 407 (620)
+++| +++.|.||+|+|||||...++....+.. .| .|+..+.......+.+.+..+|....
T Consensus 95 l~~g-~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 95 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5678 9999999999999999999844322211 11 34433331111223344555555321
Q ss_pred hcc--ccccchHHHH-H-HHHHHHhc---CCCcEEEEcCCCCCCC--------HHHH----HHHHHHHHHHHhcCCcEEE
Q 007057 408 LEQ--NLSTFSGHIS-R-IVDILELV---SRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAV 468 (620)
Q Consensus 408 ~~~--~~s~lSgg~k-r-l~~i~~l~---~~~~LlLLDEpt~glD--------~~~~----~~l~~all~~l~~~~~~vl 468 (620)
+++ ....++..+. + +..+..++ .++++|++|..+.-.. ..++ ..+...+.....+.+++||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 010 1122344432 2 22233332 5689999999876432 2222 2334434444456788888
Q ss_pred EEccCh
Q 007057 469 VTTHYA 474 (620)
Q Consensus 469 i~TH~~ 474 (620)
++.|-.
T Consensus 254 ~~nq~~ 259 (322)
T 2i1q_A 254 VTNQVS 259 (322)
T ss_dssp EEECEE
T ss_pred EECcee
Confidence 888753
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=7.8e-05 Score=76.90 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=29.1
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
+.+..| ++++|+||||+||||||+++ .|...|..|.
T Consensus 164 f~~l~g-eiv~l~G~sG~GKSTll~~l--------~g~~~~~~G~ 199 (301)
T 1u0l_A 164 KEYLKG-KISTMAGLSGVGKSSLLNAI--------NPGLKLRVSE 199 (301)
T ss_dssp HHHHSS-SEEEEECSTTSSHHHHHHHH--------STTCCCC---
T ss_pred HHHhcC-CeEEEECCCCCcHHHHHHHh--------cccccccccc
Confidence 445568 89999999999999999999 8888887763
No 183
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.32 E-value=0.00016 Score=66.72 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHHh
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~iG 372 (620)
++.+.+| +.+|+||||+||||+|.+|.
T Consensus 18 ~i~f~~g--~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG--INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC--eEEEECCCCCCHHHHHHHHH
Confidence 3445444 89999999999999999993
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=2.4e-05 Score=87.47 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=29.7
Q ss_pred eeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 330 ~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++.+.|+...+ .+++.+ +| ..++|+||||+||||++|++
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g-~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KG-PILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CS-CEEEEESSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CC-CEEEEECCCCCCHHHHHHHH
Confidence 344455543222 566666 67 89999999999999999999
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.28 E-value=7.7e-05 Score=74.80 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=26.7
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCC
Q 007057 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 388 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~ 388 (620)
.+| .+++|+|||||||||++|+++ .+.|.+.|..+
T Consensus 25 ~~g-~~I~I~G~~GsGKSTl~k~La-----~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIA-PVITVDGPSGAGKGTLCKALA-----ESLNWRLLDSG 59 (252)
T ss_dssp TTS-CEEEEECCTTSSHHHHHHHHH-----HHTTCEEEEHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHH-----HhcCCCcCCCC
Confidence 467 899999999999999999991 01166666544
No 186
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.28 E-value=0.00016 Score=76.58 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=26.2
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHh
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iG 372 (620)
++++++.+| +++|+||||+||||+|++|.
T Consensus 19 ~~~~~~~~g--~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 19 PGTLNFPEG--VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp SEEEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEcCC--eEEEECCCCCChhHHHHHHH
Confidence 778888777 99999999999999999994
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.26 E-value=0.00046 Score=71.30 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 430 SRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 430 ~~~~LlLLDEpt~gl-D~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
.++.+|++||+..-. +......+.. +++.+.+.+..+|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~-~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEecC
Confidence 458999999996632 3355566665 555556666667776664
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.26 E-value=0.00072 Score=68.73 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||+|+||||+.+.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 67899999999999999999
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.25 E-value=7.7e-05 Score=72.68 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ ..++|+||+|+||||+++.+
T Consensus 51 ~~-~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GV-QAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SC-SEEEEECSTTSSHHHHHHHH
T ss_pred CC-CeEEEECCCCCCHHHHHHHH
Confidence 35 78999999999999999999
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00013 Score=70.85 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.4
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| ++++|+|||||||||+++.+
T Consensus 6 ~~g-~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 6 ERG-LLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred CCC-cEEEEECcCCCCHHHHHHHH
Confidence 367 89999999999999999999
No 191
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00014 Score=69.96 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++||.+.+| .+++|+||+||||||+.+.+
T Consensus 17 ~~~~~~~~~-~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 17 NLYFQSNAM-VRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -------CC-CEEEEECCTTSCHHHHHHHH
T ss_pred ceeEecCCC-CEEEEEcCCCCCHHHHHHHH
Confidence 889999999 89999999999999999999
No 192
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.0005 Score=67.81 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=63.4
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhh----CccccCCCC--CCccHHHHHHHHcCCch--------hhc---
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKA----GLYLPAKNH--PRLPWFDLILADIGDHQ--------SLE--- 409 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~----G~~vp~~~~--~~l~~~d~i~~~ig~~~--------~~~--- 409 (620)
+..| +.++|.||+||||||++...-+-...... +..+...+. ......+++...++..- ...
T Consensus 73 i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (235)
T 3llm_A 73 ISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESIL 151 (235)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEEC
T ss_pred HhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhcc
Confidence 3467 89999999999999998877222111110 011111110 11122333333332210 000
Q ss_pred ----cccccchHHHHHHHHHHHhcCCCcEEEEcCCCC-CCCHHHHHHHHHHHHHHHhcCCcEE-EEEccChh-HHhhc
Q 007057 410 ----QNLSTFSGHISRIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLA-VVTTHYAD-LSCLK 480 (620)
Q Consensus 410 ----~~~s~lSgg~krl~~i~~l~~~~~LlLLDEpt~-glD~~~~~~l~~all~~l~~~~~~v-li~TH~~~-l~~~~ 480 (620)
..+--.+.|... ..+...+.+-+++++||.=. ++|..........++....+. .++ +-+|...+ +..+.
T Consensus 152 ~~~~~~Ivv~Tpg~l~-~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~-~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 152 PRPHASIMFCTVGVLL-RKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV-RIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp CCSSSEEEEEEHHHHH-HHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS-EEEEEECSSCCHHHHHHT
T ss_pred CCCCCeEEEECHHHHH-HHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC-eEEEEecCCCHHHHHHHc
Confidence 011112334432 12333578889999999965 576655544444444432221 233 34666655 33443
No 193
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=7.6e-05 Score=77.29 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.8
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCC
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 388 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~ 388 (620)
+.+.+| ++++|+||||+|||||++++ .|...|..|
T Consensus 168 ~~~~~G-~~~~lvG~sG~GKSTLln~L--------~g~~~~~~G 202 (307)
T 1t9h_A 168 IPHFQD-KTTVFAGQSGVGKSSLLNAI--------SPELGLRTN 202 (307)
T ss_dssp GGGGTT-SEEEEEESHHHHHHHHHHHH--------CC-------
T ss_pred HhhcCC-CEEEEECCCCCCHHHHHHHh--------ccccccccc
Confidence 567789 89999999999999999999 777666665
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.15 E-value=0.0017 Score=62.40 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+++.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 195
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.13 E-value=0.00021 Score=73.79 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCC
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~ 389 (620)
.+..| ++++|+||||+|||||+|++ . ...|..|.
T Consensus 161 ~~l~G-~i~~l~G~sG~GKSTLln~l--------~-~~~~~~G~ 194 (302)
T 2yv5_A 161 DYLEG-FICILAGPSGVGKSSILSRL--------T-GEELRTQE 194 (302)
T ss_dssp HHTTT-CEEEEECSTTSSHHHHHHHH--------H-SCCCCCSC
T ss_pred hhccC-cEEEEECCCCCCHHHHHHHH--------H-HhhCcccc
Confidence 34467 89999999999999999999 7 66677664
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00027 Score=73.71 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=29.8
Q ss_pred eeeecCCccc--cccceecCCceE--EEEEcCCCCcHhHHHHHH
Q 007057 332 LSKGISDFPV--PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (620)
Q Consensus 332 l~~~y~~~~v--~vsl~i~~g~~~--~~I~GpNGsGKSTlLk~i 371 (620)
++..||...+ .++..+..| ++ ++++||+|+||||+++.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHH
Confidence 3334444333 667777778 66 999999999999999999
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.10 E-value=0.00077 Score=69.84 Aligned_cols=121 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHh-hCccccCCCCCCccHHHHHHHH-cCCc-hhhccccccchHHHH-H
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILAD-IGDH-QSLEQNLSTFSGHIS-R 421 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~-~G~~vp~~~~~~l~~~d~i~~~-ig~~-~~~~~~~s~lSgg~k-r 421 (620)
-+.+| ++++|.|+.|+|||||+..++....... ...|+..+. ..-.+..++... .+.. ..+..+...||.++. +
T Consensus 64 Gl~~G-~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~ 141 (315)
T 3bh0_A 64 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK 141 (315)
T ss_dssp SBCTT-CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHH
Confidence 36788 9999999999999999999843322211 112222221 111223333332 1222 112222123777766 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcE--EEEEccCh
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGL--AVVTTHYA 474 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~-~~~~~--vli~TH~~ 474 (620)
+..+...+.++.+++.|+|+ +++.+ |.. .++.+. +.+.. +|++-|..
T Consensus 142 l~~a~~~l~~~~i~i~d~~~--~~~~~---i~~-~i~~l~~~~~~~~~lVVID~l~ 191 (315)
T 3bh0_A 142 LSMAIGEISNSNINIFDKAG--QSVNY---IWS-KTRQTKRKNPGKRVIVMIDYLQ 191 (315)
T ss_dssp HHHHHHHHHTSCEEEECCSC--CBHHH---HHH-HHHHHHHTSSSCCEEEEEECGG
T ss_pred HHHHHHHHhCCCEEEECCCC--CCHHH---HHH-HHHHHHHhcCCCCeEEEEeCch
Confidence 66666666677899999986 44433 333 222333 33556 77776643
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.10 E-value=0.00071 Score=70.26 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
-+.+| .++.|.||.|+|||||...++.. ......|+..+....+. ..+ ...+..+..+
T Consensus 119 Gi~~g-sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~----------~~~---------~~le~~l~~i 176 (331)
T 2vhj_A 119 HRYAS-GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLS----------GYN---------TDFNVFVDDI 176 (331)
T ss_dssp EEEES-EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSST----------TCB---------CCHHHHHHHH
T ss_pred CCCCC-cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhh----------hhh---------cCHHHHHHHH
Confidence 34567 78899999999999999999443 11122344331000110 000 1112223223
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHH-----------HHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 426 LELVSRESLVLIDEIGSGTDPSE-----------GVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~glD~~~-----------~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
...+.+.++|++||.+.=..... ...+...+...+.+.++++|++|+-
T Consensus 177 ~~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 177 ARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 22222223999999986433222 2233333555555668899998874
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=7.9e-05 Score=74.28 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.2
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++++.+.|++..+ ++++.+++| ++|+||||+|||||++++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g---~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCCCCHHHHHHHH
Confidence 34566666655433 778888776 799999999999999999
No 200
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.09 E-value=0.00019 Score=70.81 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.9
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
...+| .+++|.|||||||||+++++
T Consensus 16 ~~~~g-~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 16 EGTQP-FTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TTCCC-EEEEEECSTTSCHHHHHHTT
T ss_pred CCCCc-eEEEEECCCCCCHHHHHHHH
Confidence 44678 99999999999999999999
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.08 E-value=7.2e-05 Score=77.93 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|||||||||+++++
T Consensus 94 iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 202
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.07 E-value=0.0046 Score=65.47 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=63.8
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH-HhhCccccCCCCCCccHHHHHHHHcCCchh-h-ccccccchHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQS-L-EQNLSTFSGHISRIV 423 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~-~~~~s~lSgg~krl~ 423 (620)
+++| +++.|.||.|+|||||...+...... .....|+..+.. .-+. ....+|.... + -..+ .+.. .-+.
T Consensus 71 l~~G-~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s-~~~~---~a~~~g~d~~~l~i~~~--~~~e-~~l~ 142 (366)
T 1xp8_A 71 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LDPV---YARALGVNTDELLVSQP--DNGE-QALE 142 (366)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH---HHHHTTCCGGGCEEECC--SSHH-HHHH
T ss_pred ccCC-cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC-hhHH---HHHHcCCCHHHceeecC--CcHH-HHHH
Confidence 5678 89999999999999999888332211 112234544431 1111 2445554321 1 0111 1222 2233
Q ss_pred HHHHh--cCCCcEEEEcCCCCCCC-H--H---------HH-HHHHH---HHHHHHhcCCcEEEEEccCh
Q 007057 424 DILEL--VSRESLVLIDEIGSGTD-P--S---------EG-VALAT---SILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 424 ~i~~l--~~~~~LlLLDEpt~glD-~--~---------~~-~~l~~---all~~l~~~~~~vli~TH~~ 474 (620)
.+..+ ..++++|++|.++.-.. . . .. ..+.. .+.....+.+++||+++|-.
T Consensus 143 ~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 143 IMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 33333 35789999999987541 1 0 11 11222 23333356688899988864
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00078 Score=69.11 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+..+ ..++|.||+|+||||+.+.+
T Consensus 45 ~~~~~-~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 45 GMTPS-KGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCCC-SEEEEECSSSSSHHHHHHHH
T ss_pred CCCCC-ceEEEECCCCcCHHHHHHHH
Confidence 45566 78999999999999999999
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.0034 Score=73.73 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||+|+||||+++.+
T Consensus 192 ~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 45799999999999999999
No 205
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.0004 Score=67.30 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.3
Q ss_pred ccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 343 vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.++.+.+| +.+|+||||+||||+|.+|
T Consensus 17 ~~i~f~~~--~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 17 TVVEFKEG--INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEECCSE--EEEEECCTTSSHHHHHHHH
T ss_pred eEEEeCCC--eEEEEcCCCCCHHHHHHHH
Confidence 34455544 8999999999999999999
No 206
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.03 E-value=9.7e-05 Score=74.83 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.7
Q ss_pred EEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 328 ~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++++.+.|+...+ ++++.++.| ++|+||||+|||||++++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g---vll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCcChHHHHHHHH
Confidence 35567777765444 788888776 799999999999999999
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00032 Score=65.49 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| .+++|+|||||||||+++.+
T Consensus 6 ~~g-~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 6 HDH-HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TTS-EEEEEECSTTSCHHHHHHHH
T ss_pred CCC-cEEEEEcCCCCCHHHHHHHH
Confidence 357 89999999999999999999
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00018 Score=74.37 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHHHhcCC
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~~l~~~ 431 (620)
..+.|.||.|+|||+|++.++-.... +.|..+ ..+. ...++..+.. .++.|.. ......+.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v-----~~~~-~~~l~~~l~~---------~~~~~~~--~~~~~~~~~ 214 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVST-----TLLH-FPSFAIDVKN---------AISNGSV--KEEIDAVKN 214 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCE-----EEEE-HHHHHHHHHC---------CCC------CCTTHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcE-----EEEE-HHHHHHHHHH---------HhccchH--HHHHHHhcC
Confidence 67899999999999999999432220 122110 0011 1222222110 0111110 001112345
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 432 ESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 432 ~~LlLLDEpt~-glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
+++|+|||++. .+++.....+...+++.....+..+|+||+..
T Consensus 215 ~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 215 VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 78999999964 23443334455445555433356678888753
No 209
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.97 E-value=0.0003 Score=67.70 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.6
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
...+| .+++|+|||||||||+++.+
T Consensus 18 ~~~~~-~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 18 KTAGR-LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp CCSSS-EEEEEEECTTSSHHHHHHHH
T ss_pred ccCCC-eEEEEECCCCCCHHHHHHHH
Confidence 34567 89999999999999999999
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.00087 Score=78.30 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.0
Q ss_pred cceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 344 sl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++.+.++ +.++|+||||+||||++|++
T Consensus 232 ~l~i~~~-~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 232 AIGVKPP-RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp SSCCCCC-CEEEECSCTTSSHHHHHHHH
T ss_pred hcCCCCC-CeEEEECcCCCCHHHHHHHH
Confidence 3466778 88999999999999999999
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00039 Score=67.30 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.0
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
...+| ++++|+||||+|||||++.+
T Consensus 15 ~~~~g-~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 15 YFQGR-KTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp -CCSC-CEEEEECCTTSSHHHHHHHH
T ss_pred CCCCC-CEEEEECcCCCCHHHHHHHH
Confidence 33468 89999999999999999999
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.95 E-value=0.00039 Score=68.60 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCC--CccHHHH-HHHHcCCc--hhhcccc---ccchHHHH--H
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--RLPWFDL-ILADIGDH--QSLEQNL---STFSGHIS--R 421 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~--~l~~~d~-i~~~ig~~--~~~~~~~---s~lSgg~k--r 421 (620)
-.++|+|++|+|||||++.+ .|...+..+.+ ..+..-. .....+.. ..++.+- ...+..+. +
T Consensus 30 ~~i~lvG~~g~GKStlin~l--------~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSI--------LGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHH--------HTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH--------cCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHH
Confidence 46899999999999999999 55444332211 0000000 00000000 0011110 01121221 2
Q ss_pred HHH-HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEccC
Q 007057 422 IVD-ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTHY 473 (620)
Q Consensus 422 l~~-i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~--~~~~vli~TH~ 473 (620)
+.. +.....+++++|+..+.+..+..+...+.. +.+.+.. ...++|+.||-
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEK-ILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHH-HHHHHHHHHGGGEEEEEECG
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHH-HHHHhhhhccceEEEEEeCC
Confidence 222 233456788888888887888766666555 4443322 12578888883
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00031 Score=65.28 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|||||||||+++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 214
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.92 E-value=0.0019 Score=69.65 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.0
Q ss_pred eeeeecCCccccccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 331 ~l~~~y~~~~v~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.|+...-++++. ++ .+++|+||||+||||++..+
T Consensus 81 ~L~~~~~~~~~~i~l~--~~-~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SS-EEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhCCCcccccCC--CC-eEEEEECCCCCCHHHHHHHH
Confidence 3445555433356666 67 89999999999999999999
No 215
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.00085 Score=74.00 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=29.6
Q ss_pred EeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 329 ~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++...|.+..+ ++++.++.| ++|+||||+|||||+|++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G---vLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE---EEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCce---EEEECCCCCCHHHHHHHH
Confidence 3445444543333 677777766 799999999999999999
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.88 E-value=0.0054 Score=62.99 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.4
Q ss_pred eeeeecCCcccc-ccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 331 SLSKGISDFPVP-IDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 331 ~l~~~y~~~~v~-vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.|++...+ +++... + .+++++||||+||||++..+
T Consensus 79 ~l~~~~~~~~~~~i~~~~~-~-~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 79 ELSNLFGGDKEPKVIPDKI-P-YVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp HHHHHTTCSCCCCCSCSSS-S-EEEEEECSSCSSTTHHHHHH
T ss_pred HHHHHhccccccccccCCC-C-eEEEEECCCCCCHHHHHHHH
Confidence 344445443335 677765 7 89999999999999999999
No 217
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.00096 Score=69.72 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHh-hhHHHH-hh--Cc---cccCCCC-CCccHHHHHHHHcCCchhhccccccchHHH-H-H
Q 007057 352 RVVVITGPNTGGKTASMKTLG-LASLMS-KA--GL---YLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-R 421 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iG-li~~~a-~~--G~---~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~-k-r 421 (620)
..+.|+||.|+||||+++.+. .+.... .. +. ++.+... .....+..++..++... +....+.+. . +
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEVYER 120 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence 678999999999999999992 221110 00 21 2222211 11233555666665421 111222222 2 2
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHH-HHHHHHHHHHHHHh----cCCcEEEEEccChh
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPS-EGVALATSILQYLR----DRVGLAVVTTHYAD 475 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~-~~~~l~~all~~l~----~~~~~vli~TH~~~ 475 (620)
+...+.....+.+|++||+-.-.+.. ....+.. +++... ..+..+|++|+...
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~-l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR-ITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH-HHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHh-HhhchhhcCCCceEEEEEEECCCc
Confidence 33233233456799999986543221 2233333 555433 23457888998864
No 218
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.84 E-value=0.00037 Score=74.17 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=27.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.+++| ++++|+||||+|||||++.+
T Consensus 161 ~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 161 CMVYNIPKK-RYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp HHHHCCTTC-CEEEEECSTTSSHHHHHHHH
T ss_pred hcccccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 778899999 99999999999999999999
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.0035 Score=62.24 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.-++|+||+|+||||+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 34789999999999999999
No 220
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.74 E-value=0.0012 Score=75.43 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=30.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH
Q 007057 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (620)
Q Consensus 429 ~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l 476 (620)
..+.-++++| ++.|+++.....+.. +...+..+|++.|..++
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~~~~~~-----~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTERAWTV-----AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHHHHHHH-----HHHTTCCEEEEEECGGG
T ss_pred hcCcEEEEEc-CCcccchhHHHHHHH-----HHHccCCEEEEecCCch
Confidence 4677899999 999999877644332 33346777888888764
No 221
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.71 E-value=0.0048 Score=63.36 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHH-HHHHHHHHHHHHhc-CCc--EEEEEccChh-HHhhcccc
Q 007057 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSE-GVALATSILQYLRD-RVG--LAVVTTHYAD-LSCLKDKD 483 (620)
Q Consensus 415 lSgg~krl~~i~~l~~~~~LlLLDEpt~glD~~~-~~~l~~all~~l~~-~~~--~vli~TH~~~-l~~~~~~~ 483 (620)
++.+++.+...+.....|.++++ |.+|... ...+.. .++.+.+ .+. .+.+++|+.+ +..+.+.+
T Consensus 101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~-~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLP-HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH-HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHH-HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 88888765544444578888888 8888865 455555 3444544 343 5566777754 66655543
No 222
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.00029 Score=66.59 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
++++|+||||||||||++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 223
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.68 E-value=0.0013 Score=64.77 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhC----ccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAG----LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G----~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~ 424 (620)
+| .+++|+||-|+||||++-.+..- ....| .+.|... .. + ..++..++|..-.. ..+... . .-...
T Consensus 11 ~G-~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d-~r-~-~~~i~srlG~~~~~-~~~~~~--~-~i~~~ 80 (223)
T 2b8t_A 11 IG-WIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID-TR-S-IRNIQSRTGTSLPS-VEVESA--P-EILNY 80 (223)
T ss_dssp CC-EEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC-GG-G-CSSCCCCCCCSSCC-EEESST--H-HHHHH
T ss_pred Cc-EEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC-ch-H-HHHHHHhcCCCccc-cccCCH--H-HHHHH
Confidence 47 89999999999999988666221 11122 1223332 11 1 12344445543111 111111 1 11122
Q ss_pred HHHh--cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh-----------hHHhhccccce
Q 007057 425 ILEL--VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTR 485 (620)
Q Consensus 425 i~~l--~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~-----------~l~~~~~~~~~ 485 (620)
+... -.++++|++||.-. +++. +.+ .+..+.+.+..||++.|+. ++..+||.+..
T Consensus 81 i~~~~~~~~~dvViIDEaQ~-l~~~----~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~e 148 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQF-FDDR----ICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK 148 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGG-SCTH----HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEE
T ss_pred HHHHhhCCCCCEEEEecCcc-CcHH----HHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEee
Confidence 2222 24589999999954 5543 222 2344555688999999932 24457776655
No 224
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.68 E-value=0.00017 Score=75.65 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=32.0
Q ss_pred eeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 330 ~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+++.+.|+...+ ++++.+.++ .+++|+|+||+||||+++.+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~-~~i~i~G~~g~GKSTl~~~l 76 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNT-LRLGVTGTPGAGKSTFLEAF 76 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCS-EEEEEEECTTSCHHHHHHHH
T ss_pred CCchhhhHHHHHHHhCCcccCCC-EEEEEEcCCCCCHHHHHHHH
Confidence 344444443333 678888888 89999999999999999999
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.00082 Score=64.63 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=23.0
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+.+| .+++|+||+||||||+.+.+
T Consensus 17 ~~~~~-~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 17 RGSKT-FIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CSCCC-EEEEEEESTTSSHHHHHHHH
T ss_pred cCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 56678 89999999999999999999
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0025 Score=64.18 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..+ ..+.|.||.|+||||+.+.+
T Consensus 49 ~~~-~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 49 EPP-KGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCC-SEEEEESSSSSSHHHHHHHH
T ss_pred CCC-CeEEEECCCCCcHHHHHHHH
Confidence 345 67899999999999999999
No 227
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.64 E-value=0.0067 Score=59.75 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=21.6
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..| .+++|.||+||||||+++.+
T Consensus 24 ~~g-~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 24 AMS-AFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCC-EEEEEECCTTSCHHHHHHHH
T ss_pred CCC-eEEEEEcCCCCCHHHHHHHH
Confidence 378 89999999999999999999
No 228
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0028 Score=65.57 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh
Q 007057 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 430 ~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~ 475 (620)
.++.+|++|| ...+++....+|.. +++.... ...+|++|++..
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRR-TMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHH-HHHhcCC-CceEEEEeCchh
Confidence 4567999999 67788877777766 3443222 345666776654
No 229
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.58 E-value=0.00095 Score=64.02 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|||||||||+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 230
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.57 E-value=0.0012 Score=62.60 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+||||+|||||++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l 49 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999999
No 231
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.57 E-value=0.015 Score=60.20 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=66.1
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH---HhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV 423 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~---a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~ 423 (620)
+++| ++.|.||.|+|||||+-++...... .....|+-.++. +.. ....++|....----...-++++..+.
T Consensus 26 l~~G--iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~--~ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 26 MQSG--LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITP--AYLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp BCSE--EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCH--HHHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred CcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhH--HHHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 3456 6899999999999997776221111 112245555442 221 235677764221111122244443243
Q ss_pred HHHHh----cCCCcEEEEcCCCCCCC-------HH-------HH-HHHHHH---HHHHHhcCCcEEEEEccChh
Q 007057 424 DILEL----VSRESLVLIDEIGSGTD-------PS-------EG-VALATS---ILQYLRDRVGLAVVTTHYAD 475 (620)
Q Consensus 424 ~i~~l----~~~~~LlLLDEpt~glD-------~~-------~~-~~l~~a---ll~~l~~~~~~vli~TH~~~ 475 (620)
.+..+ -.+|++|++|=.++-.. +. .+ ..+..+ +...+.+.+.++|+|-|-..
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 33222 35789999999887652 10 11 122222 33445677899999999865
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.0011 Score=62.60 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.4
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
|+++....+ ..++|+|+.||||||+.+.+
T Consensus 2 ~~~~~~~~~-~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 2 PGSMEQPKG-INILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp ----CCCSS-CEEEEECSTTSSHHHHHHHH
T ss_pred CcCcCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 467777788 89999999999999999999
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0021 Score=65.46 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||+|+||||+.+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 57899999999999999999
No 234
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.52 E-value=0.00035 Score=64.95 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 57799999999999999998
No 235
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.51 E-value=0.00078 Score=75.20 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=23.5
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+.+| ++++|+|+|||||||++|+|
T Consensus 365 ~~~~G-~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQG-FTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSC-EEEEEEESSCHHHHHHHHHH
T ss_pred ccccc-eEEEEECCCCChHHHHHHHH
Confidence 56788 99999999999999999999
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.48 E-value=0.0011 Score=63.29 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|||||||||+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999999
No 237
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.44 E-value=0.00082 Score=74.46 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.6
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhh
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli 374 (620)
++++.+.+| +.+|+|+||+||||+|.+|.++
T Consensus 53 ~~~l~f~~g--~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG--FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS--EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC--eEEEEcCCCCCHHHHHHHHHHH
Confidence 567777777 8999999999999999999444
No 238
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.00047 Score=64.06 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 239
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.41 E-value=0.0014 Score=63.58 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+||||||+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 240
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.41 E-value=0.017 Score=71.95 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=64.3
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-hhCccccCCCCCCccHHHHHHHHcCCch-hhccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~s~lSgg~krl~~ 424 (620)
+.+| +++.|.||+|+|||||+..++...... ....|+-.+. ..-.. ....+|... .+ .-...-+..+. +..
T Consensus 729 l~~G-~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee-s~~ql---~A~~lGvd~~~L-~i~~~~~leei-~~~ 801 (1706)
T 3cmw_A 729 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPI---YARKLGVDIDNL-LCSQPDTGEQA-LEI 801 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS-CCCHH---HHHHTTCCGGGC-EEECCSSHHHH-HHH
T ss_pred cCCC-ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc-hHHHH---HHHHcCCChhhe-EEecCCcHHHH-HHH
Confidence 6788 999999999999999999994332221 1112333332 11111 134455321 11 00111133222 222
Q ss_pred HHH--hcCCCcEEEEcCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEccC
Q 007057 425 ILE--LVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 425 i~~--l~~~~~LlLLDEpt~glD-~~------------~~~~l~~---all~~l~~~~~~vli~TH~ 473 (620)
+.. .-.+|++|++|+...-.. .. ....+.. .+...+.+.+++||+++|-
T Consensus 802 l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 802 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 221 236899999999987662 10 1122332 2333445678899999884
No 241
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.39 E-value=0.012 Score=63.75 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=61.7
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhC---ccccCCCCCCccHHHHHHHH-cCCchhhccccccchHHHH-H
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILAD-IGDHQSLEQNLSTFSGHIS-R 421 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G---~~vp~~~~~~l~~~d~i~~~-ig~~~~~~~~~s~lSgg~k-r 421 (620)
+.+| ++++|.|++|+|||||+..++...... .| .|+..+. ..-.+..+++.. .+..... -.-..|+.++. +
T Consensus 197 l~~G-~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~-l~~g~l~~~~~~~ 272 (444)
T 2q6t_A 197 LGPG-SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNR-VRLGQLTDRDFSR 272 (444)
T ss_dssp CCTT-CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTT-CCGGGCCHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHH-HhCCCCCHHHHHH
Confidence 6678 999999999999999999984433321 12 2222221 111223333322 2322111 11235777776 5
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 007057 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (620)
Q Consensus 422 l~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~T 471 (620)
+..+...+...++.+.|+| ++++.+-.+.+. +...+.+..+|++-
T Consensus 273 ~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~~~---~l~~~~~~~lIvID 317 (444)
T 2q6t_A 273 LVDVASRLSEAPIYIDDTP--DLTLMEVRARAR---RLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHHHTSCEEEECCT--TCBHHHHHHHHH---HHHHHSCCCEEEEE
T ss_pred HHHHHHHHhcCCEEEECCC--CCCHHHHHHHHH---HHHHHcCCCEEEEc
Confidence 6666555556678888876 445544333222 22223455555553
No 242
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.38 E-value=0.0018 Score=60.73 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| .+++|+|++||||||+.+.+
T Consensus 4 ~g-~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RG-CTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 46 89999999999999999999
No 243
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.38 E-value=0.0015 Score=69.17 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhh
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL 373 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGl 373 (620)
+.++.+.+| +.+|+||||+||||+|-.|.+
T Consensus 18 ~~~i~f~~g--l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEKG--IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCSE--EEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCCC--eEEEECCCCCCHHHHHHHHHH
Confidence 345555555 899999999999999999955
No 244
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.37 E-value=0.0059 Score=62.37 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|.||.|+|||++.+.+
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 56788999999999999999
No 245
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=96.31 E-value=0.016 Score=48.55 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007057 542 RQQHRKSELYQSLMEERRKLESQAR----------TAASLHAEIMDLYREVYTFCIIISHAKR 594 (620)
Q Consensus 542 ~~~~~~e~~~~~le~~~~~le~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (620)
++.+.++..|++|+.++.+++.+++ ++..+..+++.++.+|+..+++|++++-
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999995 5788999999999999999999998863
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.31 E-value=0.024 Score=61.31 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCc---cccCCCCCCccHHHHHHH---HcCCchhhccccccchHHHHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~---~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
.+++++||+|+||||++..++ ..+++.|. ++.++. .+...++++-. ..|..-. ......=.....+-++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA--~~l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~-~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA--RYFQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVF-GNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH--HHHHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEE-CCTTCCCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH--HHHHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEE-ecCCCCCHHHHHHHHHH
Confidence 799999999999999998883 22333442 233332 23333444322 2222110 00000000111111112
Q ss_pred HHhcCCCcEEEEcCCCCC-CCHHHHHHHHH
Q 007057 426 LELVSRESLVLIDEIGSG-TDPSEGVALAT 454 (620)
Q Consensus 426 ~~l~~~~~LlLLDEpt~g-lD~~~~~~l~~ 454 (620)
.+...+.+++|+|.|+.. .|...-..+..
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~ 206 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence 223356899999999854 45544444443
No 247
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.22 E-value=0.0021 Score=61.10 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+||||+|||||++.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999999
No 248
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.19 E-value=0.002 Score=61.85 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.8
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..+| .+++|+||+||||||+.+.+
T Consensus 9 ~~~~-~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARI-PPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCC-CCEEEECCTTSCHHHHHHHH
T ss_pred cccC-CEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999999
No 249
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.012 Score=61.71 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+.+.+
T Consensus 118 ~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 250
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.18 E-value=0.017 Score=57.00 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+||||+.+.+
T Consensus 40 ~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999
No 251
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.021 Score=55.67 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=32.0
Q ss_pred cCCCcEEEEcCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 429 VSRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 429 ~~~~~LlLLDEpt~----glD~~~~~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
..+++++++|-.+. .-+......+...+.....+.++++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46788999997542 22444555666667666677789999999864
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.17 E-value=0.027 Score=70.12 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=67.0
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHH-HhhCccccCCCCCCccHHHHHHHHcCCch-hhccccccchHHHH-HHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~s~lSgg~k-rl~ 423 (620)
+++| +++.|.||.|+|||||.-.+...... .....|+-.+.. .... ....+|..- .+. -...-+.++. ...
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s--~~~~--~a~~lGvd~~~L~-i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPI--YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC--CCHH--HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc--hHHH--HHHHcCCCHHHeE-EcCCCCHHHHHHHH
Confidence 5688 99999999999999999888332221 112235544432 1211 245555431 111 0111123332 222
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEccCh
Q 007057 424 DILELVSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 424 ~i~~l~~~~~LlLLDEpt~glD~~--------------~~--~~l~~all~~l~~~~~~vli~TH~~ 474 (620)
..+..-.++++|++|..+.-.... .+ ..+...+...+++.++++|+++|-.
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 212224689999999998876411 11 1222224444466789999998863
No 253
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.08 E-value=0.0022 Score=68.09 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.9
Q ss_pred CeEEEeeeeeecCCccc-----------------cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 325 SEMTVGSLSKGISDFPV-----------------PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-----------------~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+.+.++|+++.|..... ++.+.+.+| +.++|+||+|+|||||++.|
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rG-Qr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTT-CEEEEECCSSSSHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCC-cEEEEecCCCCChhHHHHHH
Confidence 45678888888864321 477888899 89999999999999999998
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.08 E-value=0.0016 Score=64.27 Aligned_cols=121 Identities=21% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhCcc---ccCCCCCCccHHHHHHHHcCCchhhccccccchHH---HHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY---LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH---ISRI 422 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~---vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg---~krl 422 (620)
.|.-.+.+.|+-|+||||++-.+|.. +++.|.- +-.+......... .. -++.. .....-.+.+. +..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~q~~~~~~a-l~--~gl~~-~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVETHGRAETEA-LL--NGLPQ-QPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCTTCHHHHH-HH--TTSCB-CCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCCCCChhHHH-Hh--cCccc-cCcceeecCCcccccccH
Confidence 45335788999999999997766332 2234421 1222111222222 11 12221 11111112111 1112
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHH
Q 007057 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (620)
Q Consensus 423 ~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~ 477 (620)
..++. .+|+++|+||++.--.+..+..+....+..+...+.-++.++|-..+.
T Consensus 78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~e 130 (228)
T 2r8r_A 78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLE 130 (228)
T ss_dssp HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBG
T ss_pred HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccc
Confidence 22222 479999999998642333333333334444556677888999865443
No 255
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.06 E-value=0.023 Score=56.09 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=62.8
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhh--CccccCCCCCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKA--GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~--G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
|....-..| .+.+++||=|+||||.|-........+.. -.+.|... .+.+ ..+.+++|..-... .+....-
T Consensus 11 p~~~~~~~g-~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg--~~i~sr~G~~~~a~-~i~~~~d-- 83 (234)
T 2orv_A 11 PGSPSKTRG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEAL-PACLLRD-- 83 (234)
T ss_dssp -------CC-EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-------------CEEE-EESSGGG--
T ss_pred CCCCCCCce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccch--HHHHhhcCCeeEEE-ecCCHHH--
Confidence 333334468 89999999999999866544222111111 12345544 3434 56777776542211 1222111
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh-----------hHHhhcccccee
Q 007057 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 486 (620)
Q Consensus 420 krl~~i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~-----------~l~~~~~~~~~~ 486 (620)
+...+.+.++|++||.---.+ +.+ +++.+.+.|..||++.++. ++..+||.+..+
T Consensus 84 -----i~~~~~~~dvViIDEaQF~~~------v~e-l~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 84 -----VAQEALGVAVIGIDEGQFFPD------IVE-FCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp -----GHHHHTTCSEEEESSGGGCTT------HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred -----HHHHhccCCEEEEEchhhhhh------HHH-HHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 222236789999999876654 333 4455555688999999993 244567766553
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.90 E-value=0.003 Score=60.37 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+||||||+.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 257
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.037 Score=59.78 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH-HHHH--HHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISR--IVDILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg-g~kr--l~~i~~l 428 (620)
+-+.+.||.|+|||++.|+++- ..|.... . +...+. .+.+.| +++. ..+..+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~-----e~~~~~~-----~----------v~~s~l----~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA-----TIGANFI-----F----------SPASGI----VDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH-----HHTCEEE-----E----------EEGGGT----CCSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH-----HhCCCEE-----E----------Eehhhh----ccccchHHHHHHHHHHHHHH
Confidence 5689999999999999999921 1222110 0 001111 122222 2333 3333455
Q ss_pred cCCCcEEEEcCCCC----------CCCHHHHHHHHHHHHHHHhc----CCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIGS----------GTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt~----------glD~~~~~~l~~all~~l~~----~~~~vli~TH~~~ 475 (620)
...|.+|++||.=+ +.|.... .....++..+-. .+..||.+|+..+
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~-~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQ-RTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHH-HHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred hcCCceeeeecccccccccccCCCCcchHHH-HHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 67899999999832 1222222 233335555532 2347888999876
No 258
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.019 Score=51.82 Aligned_cols=41 Identities=7% Similarity=0.119 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 007057 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (620)
Q Consensus 431 ~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~ 473 (620)
++.++++||.. .+++.....|.. +++.....+..+|++|+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~-~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITF-IIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHH-HHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHH-HHHhCCCCCEEEEEecCC
Confidence 35799999987 456767777776 344333334567777664
No 259
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.04 Score=52.00 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.+.|+||.|+||||+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
No 260
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.83 E-value=0.037 Score=69.73 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=64.5
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-hhCccccCCCCCCccHHHHHHHHcCCc-hhhccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~s~lSgg~krl~~ 424 (620)
+++| +.+.|.||.|+|||||...++...... ....|+..++ ..-+.+ ...+|.. +.+ .++.---+++-+..
T Consensus 1424 i~~g-~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~-~~~~l~---a~~~G~dl~~l--~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPIY---ARKLGVDIDNL--LCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS-CCCHHH---HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc-ccCHHH---HHHcCCCchhc--eeecCChHHHHHHH
Confidence 6688 899999999999999999995433321 1113444443 222222 4455522 111 11111112332333
Q ss_pred HHHh--cCCCcEEEEcCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEcc
Q 007057 425 ILEL--VSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTH 472 (620)
Q Consensus 425 i~~l--~~~~~LlLLDEpt~glD~~--------------~~--~~l~~all~~l~~~~~~vli~TH 472 (620)
+..+ -..|++|++||...-+-.. ++ ..+...+..++.+++.++|++-.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 3222 3689999999986444321 11 22333366666777777666643
No 261
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.79 E-value=0.0038 Score=65.60 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ .+++|+|++|+|||||++.+
T Consensus 73 ~~-~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 73 LA-FRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp SC-EEEEEECCTTSSHHHHHHHH
T ss_pred Cc-eEEEEEcCCCCCHHHHHHHH
Confidence 35 79999999999999999999
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.75 E-value=0.0047 Score=57.84 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| .+++|+||+||||||+.+.+
T Consensus 3 ~g-~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VG-QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CE-EEEEEECCTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999999
No 263
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.73 E-value=0.0058 Score=57.50 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=21.3
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| .+++|+|++||||||+.+.+
T Consensus 11 ~~~-~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 11 EKG-IVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp SCC-EEEEEECCTTSSHHHHHHHH
T ss_pred CCC-cEEEEEcCCCCCHHHHHHHH
Confidence 467 89999999999999999999
No 264
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.73 E-value=0.021 Score=61.96 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.7
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhh
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLA 374 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli 374 (620)
+.+| ++++|.|+.|+|||||+-.++..
T Consensus 194 l~~G-~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 194 YKRR-NFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp BCSS-CEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCC-cEEEEEeCCCCChHHHHHHHHHH
Confidence 6788 99999999999999999888443
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.71 E-value=0.08 Score=61.18 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.-++|+||.|+||||+.+.+
T Consensus 202 ~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 46799999999999999999
No 266
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.70 E-value=0.0048 Score=59.54 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred ceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 345 l~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+.+.+| .+++|+|++||||||+.+.+
T Consensus 20 ~~~~~~-~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 20 LRNQRG-LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp HHTSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 455678 89999999999999999999
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.68 E-value=0.034 Score=56.35 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+||||+.+.+
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 268
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.61 E-value=0.033 Score=61.13 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=23.1
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhh
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGL 373 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGl 373 (620)
+.+| ++++|.|++|+|||||+-.+..
T Consensus 239 l~~G-~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 239 ARGG-EVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCTT-CEEEEEESSCHHHHHHHHHHHH
T ss_pred cCCC-eEEEEeecCCCCchHHHHHHHH
Confidence 6688 9999999999999999988843
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.61 E-value=0.066 Score=67.57 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHHhhhHHHH-hhCccccCCCCCCccHHHHHHHHcCCch-hhccccccchHHHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~s~lSgg~krl~~ 424 (620)
+++| +++.|.||.|+|||||...+....... ....|+-.+. .+... ....+|..- .+. -....+.++- +..
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~--s~~~~--~a~~lGvd~~~L~-I~~~~~~e~i-l~~ 452 (2050)
T 3cmu_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPI--YARKLGVDIDNLL-CSQPDTGEQA-LEI 452 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS--CCCHH--HHHHTTCCTTTCE-EECCSSHHHH-HHH
T ss_pred ccCC-cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC--CHHHH--HHHHcCCCHHHeE-EeCCCCHHHH-HHH
Confidence 6688 999999999999999998883322211 1112443333 12211 244555431 110 0111233332 222
Q ss_pred HHH--hcCCCcEEEEcCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEccCh
Q 007057 425 ILE--LVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHYA 474 (620)
Q Consensus 425 i~~--l~~~~~LlLLDEpt~glD-~~------------~~~~l~~---all~~l~~~~~~vli~TH~~ 474 (620)
+.. ...++++|++|....-.. +. ....+.. .+...+.+.+++||+++|-.
T Consensus 453 ~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 222 246899999999987653 11 1112222 23333457788999999864
No 270
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.59 E-value=0.037 Score=57.15 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|.||.|+|||++.+.+
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 57899999999999999999
No 271
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.016 Score=62.50 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH-HHHHHH--HHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV--DILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg-g~krl~--~i~~l 428 (620)
+-+.+.||.|+|||++.|.++-- .|..+. .+ ...+. .+.+.| +++.+. +..+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~-----~~~~~~-----~v----------~~~~l----~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS-----TKAAFI-----RV----------NGSEF----VHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH-----HTCEEE-----EE----------EGGGT----CCSSCSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-----hCCCeE-----EE----------ecchh----hccccchhHHHHHHHHHHHH
Confidence 56899999999999999999211 221110 00 11111 122222 233333 23445
Q ss_pred cCCCcEEEEcCCC----------CCCCHHHHHHHHHHHHHHHhc----CCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIG----------SGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt----------~glD~~~~~~l~~all~~l~~----~~~~vli~TH~~~ 475 (620)
...|.++++||.- .+-|......+.. ++..+-. .+..||++|++.+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~-lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE-LLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH-HHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH-HHHHhhCCCCCCCEEEEEecCChh
Confidence 5789999999982 2233333333333 5555432 2446788998876
No 272
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.58 E-value=0.0028 Score=66.92 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=27.8
Q ss_pred eEEEeeeeeecCCccc--cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
-+.+.+++..|+.+.+ ++++. ++|+|+||+|||||++++
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~-------I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFT-------LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEEC-------EEECCCTTSCHHHHHHHH
T ss_pred eEEeccchHHhCCeeecCCCCEE-------EEEEcCCCCCHHHHHHHH
Confidence 4567788888876555 44443 489999999999999998
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.56 E-value=0.0025 Score=74.48 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.0
Q ss_pred ccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 343 vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.++.+.++ ..++|+||||+||||+.|++
T Consensus 504 ~~~~~~~~-~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 504 LKFGMTPS-KGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp TCCCCCCC-CCCCCBCCTTSSHHHHHHHH
T ss_pred HhcCCCCC-ceeEEECCCCCCHHHHHHHH
Confidence 34556677 78899999999999999999
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.55 E-value=0.0061 Score=56.01 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 275
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.54 E-value=0.018 Score=52.12 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.-+.|+||.|+|||++.+.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.36 E-value=0.008 Score=54.98 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 277
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.35 E-value=0.0082 Score=58.98 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| .+++|+|+|||||||+.+.+
T Consensus 14 ~~~-~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKT-IQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCC-CEEEEECSSCSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 356 79999999999999999999
No 278
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.33 E-value=0.032 Score=58.00 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+||||+++.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 279
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.31 E-value=0.04 Score=56.70 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+||||+.+.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 35799999999999999999
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.31 E-value=0.0084 Score=55.00 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 281
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.037 Score=59.13 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH-HHHHHH--HHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV--DILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg-g~krl~--~i~~l 428 (620)
+-+.+.||.|+|||++.|+++- ..|.... . +...+. .+.+.| +++.+. +..+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~-----e~~~~f~-----~----------v~~s~l----~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH-----HTDCKFI-----R----------VSGAEL----VQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH-----HHTCEEE-----E----------EEGGGG----SCSSTTHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH-----hhCCCce-----E----------EEhHHh----hccccchHHHHHHHHHHHHH
Confidence 4579999999999999999921 1221110 0 111111 122222 334333 33445
Q ss_pred cCCCcEEEEcCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt~gl----------D~~~~~~l~~all~~l~~----~~~~vli~TH~~~ 475 (620)
...|.+|++||.=+-. |......+ ..++..+-. .+..||.+|...+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l-~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTM-LELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHH-HHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHH-HHHHHhhhccCCCCCeEEEeccCChh
Confidence 6789999999974321 22222233 335555532 2346788998876
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.27 E-value=0.0087 Score=56.52 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+|+|||||++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 68899999999999999998
No 283
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.036 Score=59.82 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
+-+.+.||.|+|||++.|++
T Consensus 216 rGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.26 E-value=0.0073 Score=57.72 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
+.++|+||+|+|||||++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999988
No 285
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.22 E-value=0.046 Score=55.71 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+.+.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 286
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.21 E-value=0.0095 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| ..++|+|++|+|||||++.+
T Consensus 3 ~~-~ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 3 HG-MKVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp -C-EEEEEEESTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 45 67899999999999999999
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.17 E-value=0.011 Score=57.07 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|++||||||+.+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.01 Score=55.02 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.12 E-value=0.011 Score=55.47 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ .+++|+|+.||||||+.+.+
T Consensus 4 ~~-~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TP-ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CC-EEEEEEESTTSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 290
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.10 E-value=0.025 Score=54.18 Aligned_cols=121 Identities=16% Similarity=0.233 Sum_probs=60.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHhhhHHHHhh--CccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKA--GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~--G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i~ 426 (620)
+| .+.+++||-|+||||.+-.+..-..-+.. ..+.|... .+.+ ...+.+.+|..-. ...+.... .+.
T Consensus 7 ~g-~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~ 75 (191)
T 1xx6_A 7 HG-WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EIL 75 (191)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEE-CEEESSST-------HHH
T ss_pred CC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-ccch-HHHHHhhcCCcee-eEeeCCHH-------HHH
Confidence 47 89999999999999887655221111111 11223321 1111 1122333343211 01112221 222
Q ss_pred Hhc-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCh-----------hHHhhcccccee
Q 007057 427 ELV-SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 486 (620)
Q Consensus 427 ~l~-~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~-----------~l~~~~~~~~~~ 486 (620)
..+ .+.++|++||.-- +|+..-. .++.+...+..||++.++. ++..+||.+..+
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~v~-----~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEIVE-----IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHHHH-----HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHhccCCEEEEECCCC-CCHHHHH-----HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 233 3479999999654 6654422 3344455578899999854 244577766443
No 291
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.08 E-value=0.023 Score=59.91 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=18.5
Q ss_pred eEEEE--EcCCCCcHhHHHHHH
Q 007057 352 RVVVI--TGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I--~GpNGsGKSTlLk~i 371 (620)
..++| +||.|+|||||++.+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHH
Confidence 67788 999999999999998
No 292
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.03 E-value=0.011 Score=58.92 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|||||||||+-+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 46899999999999999998
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.02 E-value=0.012 Score=55.03 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.98 E-value=0.013 Score=54.23 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 57899999999999999998
No 295
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=0.012 Score=54.69 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.92 E-value=0.034 Score=61.04 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.-+.|+||.|+|||++.+.+
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.01 Score=59.13 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.0
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
....+ .+++|+||+||||||+.+.+
T Consensus 28 ~~~~~-~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 28 SSKQP-IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp CCSSC-EEEEEESCGGGTTHHHHHHH
T ss_pred cccCC-eEEEEECCCCCCHHHHHHHH
Confidence 34556 89999999999999999999
No 298
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.061 Score=58.34 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH-HHHH--HHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISR--IVDILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg-g~kr--l~~i~~l 428 (620)
+-+.+.||.|+|||++.|+++- ..|.... . +...+. .+.+.| +++. ..+..+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~-----e~~~~fi-----~----------vs~s~L----~sk~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN-----RTDATFI-----R----------VIGSEL----VQKYVGEGARMVRELFEMAR 299 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH-----HHTCEEE-----E----------EEGGGG----CCCSSSHHHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh-----ccCCCeE-----E----------EEhHHh----hcccCCHHHHHHHHHHHHHH
Confidence 5689999999999999999921 1222110 0 001111 122222 3333 3333556
Q ss_pred cCCCcEEEEcCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEccChh
Q 007057 429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (620)
Q Consensus 429 ~~~~~LlLLDEpt~gl----------D~~~~~~l~~all~~l~~----~~~~vli~TH~~~ 475 (620)
...|.+|++||.-+-. +......+.. ++..+-. .+..||.+|+..+
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE-LITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHH-HHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHH-HHHHhhccCCCCcEEEEeCCCCcc
Confidence 6889999999985332 2222223333 4444432 2346788998876
No 299
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.89 E-value=0.054 Score=56.76 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|.||.|+||||+.+.+
T Consensus 85 ~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999
No 300
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.86 E-value=0.035 Score=55.48 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+||||+.+.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 67899999999999999999
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.85 E-value=0.011 Score=54.87 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+||+||||||+.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999999
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.79 E-value=0.014 Score=55.07 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5899999999999999999
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.76 E-value=0.013 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ .+++|+|+.||||||+.+.+
T Consensus 10 ~~-~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 10 LL-PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CC-CCEEEECSTTSSHHHHHHHH
T ss_pred cC-CeEEEEeCCCCCHHHHHHHH
Confidence 45 68899999999999999998
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.74 E-value=0.015 Score=59.32 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ .+++|+||+||||||+.+.+
T Consensus 32 ~~-~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SP-TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SC-EEEEEECCTTSCTHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999998
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.67 E-value=0.016 Score=54.08 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|++|+|||||++.+
T Consensus 4 kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 306
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.65 E-value=0.011 Score=58.91 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+|||++.+.+
T Consensus 30 ~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHH
Confidence 46789999999999999999
No 307
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.60 E-value=0.086 Score=51.37 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=59.9
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHHhhhHHHHhhC--ccccCCCCCCccHHHHHHHHcCCchhhccccccchHHHHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAG--LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~iGli~~~a~~G--~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~krl~~i 425 (620)
.+| .+.+++||=|+||||.+-.+..-..-+..- .+.|... .+.+ -..+.+++|..-.. ..++... .+
T Consensus 26 ~~G-~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~ 94 (214)
T 2j9r_A 26 QNG-WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYS-EEDVVSHNGLKVKA-VPVSASK-------DI 94 (214)
T ss_dssp CSC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGG-------GG
T ss_pred CCC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-Ccch-HHHHHhhcCCeeEE-eecCCHH-------HH
Confidence 457 899999999999999876662222221111 2334332 2222 22455555543111 1112211 12
Q ss_pred HHhcC-CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChh-----------HHhhcccccee
Q 007057 426 LELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-----------LSCLKDKDTRF 486 (620)
Q Consensus 426 ~~l~~-~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~-----------l~~~~~~~~~~ 486 (620)
...+. +.++|++||.-- +|+..- + +++.+...+..||++.++.+ |..+||.+..+
T Consensus 95 ~~~~~~~~dvViIDEaQF-~~~~~V----~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel 161 (214)
T 2j9r_A 95 FKHITEEMDVIAIDEVQF-FDGDIV----E-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL 161 (214)
T ss_dssp GGGCCSSCCEEEECCGGG-SCTTHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHHhcCCCEEEEECccc-CCHHHH----H-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence 22233 578999999865 555432 2 33444555889999999432 44567766554
No 308
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.082 Score=56.83 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHhhhHHHHhhCccccCCCCCCccHHHHHHHHcCCchhhccccccchH-HHHHH--HHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRI--VDILEL 428 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iGli~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s~lSg-g~krl--~~i~~l 428 (620)
+-+.+.||.|+|||.+.|+++-- .|.... . +...+.. +.+.| +++.+ .+..+-
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e-----~~~~fi-----~----------v~~s~l~----sk~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ-----TSATFL-----R----------IVGSELI----QKYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH-----HTCEEE-----E----------EESGGGC----CSSSSHHHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH-----hCCCEE-----E----------EEHHHhh----hccCchHHHHHHHHHHHHH
Confidence 56899999999999999999211 221110 0 0111111 22222 33333 333445
Q ss_pred cCCCcEEEEcCCCC----------CCCHHHHHHHHHHHHHHHhc----CCcEEEEEccChhH
Q 007057 429 VSRESLVLIDEIGS----------GTDPSEGVALATSILQYLRD----RVGLAVVTTHYADL 476 (620)
Q Consensus 429 ~~~~~LlLLDEpt~----------glD~~~~~~l~~all~~l~~----~~~~vli~TH~~~l 476 (620)
...|.+|++||.=+ +-+......+.. ++..+-. .+..||.+|+..+.
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE-LLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHH-HHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHH-HHHHhhCcCCCCCEEEEEeCCChhh
Confidence 67899999999632 122222333333 5554432 23467889998763
No 309
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.58 E-value=0.084 Score=53.98 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.+.||.|+||||+.+.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHH
Confidence 57788899999999999999
No 310
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.48 E-value=0.013 Score=61.46 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.8
Q ss_pred cccceecCCceE--EEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~--~~I~GpNGsGKSTlLk~i 371 (620)
.+++.+.+| ++ ++|+||+|+||||+.+++
T Consensus 14 ~l~~~i~~g-~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 14 LLDNRIEDN-YRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HHHHTTTTC-SCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhccC-CeeEEEEECCCCCcHHHHHHHH
Confidence 566667777 55 999999999999999999
No 311
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.036 Score=61.19 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.|+||||+.+.+
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 312
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.46 E-value=0.021 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| .+++|+|+.||||||+.+.+
T Consensus 3 ~~-~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RG-ALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 46 78999999999999999999
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.46 E-value=0.02 Score=54.06 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.45 E-value=0.027 Score=61.18 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|.||.|+||||+.+.+
T Consensus 52 ~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999999999
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.44 E-value=0.0093 Score=57.06 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|.||+||||||+++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999998
No 316
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.41 E-value=0.085 Score=54.25 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|.||.|+|||++.+.+
T Consensus 52 ~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 56899999999999999999
No 317
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.39 E-value=0.061 Score=58.19 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|.||.|+|||++.+.+
T Consensus 168 ~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 318
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.37 E-value=0.02 Score=56.70 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-+++|+||+||||||+.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 319
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.36 E-value=0.013 Score=60.25 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.|+||.|+|||++.+.+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHH
Confidence 46789999999999999999
No 320
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.36 E-value=0.042 Score=55.79 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.+.|.||.|+||||+.+.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4899999999999999999
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.023 Score=53.05 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 322
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.33 E-value=0.021 Score=59.96 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=20.7
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++.++ .++|+|++|+||||||+.+
T Consensus 29 ~i~~~lp----~I~vvG~~~sGKSSLln~l 54 (360)
T 3t34_A 29 TLWDSLP----AIAVVGGQSSGKSSVLESI 54 (360)
T ss_dssp ---CCCC----EEEEECBTTSSHHHHHHHH
T ss_pred cccccCC----EEEEECCCCCcHHHHHHHH
Confidence 5566664 7899999999999999999
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.31 E-value=0.024 Score=53.80 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| .+++|+|+.||||||+.+.+
T Consensus 3 ~~-~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KG-VLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-eEEEEEcCCCCCHHHHHHHH
Confidence 35 78999999999999999999
No 324
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.31 E-value=0.15 Score=53.91 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|.||.|+|||++.+.+
T Consensus 149 ~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.28 E-value=0.022 Score=53.59 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.19 E-value=0.024 Score=53.22 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++ .+++|+|+.||||||+.+.+
T Consensus 8 ~~-~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KT-NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TS-CEEEEEECTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 45 79999999999999999998
No 327
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.18 E-value=0.024 Score=52.95 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.17 E-value=0.023 Score=53.84 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|++||||||+.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.05 E-value=0.021 Score=53.00 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CEEEEECCC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.04 E-value=0.027 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| .+++|+|+.||||||+.+.+
T Consensus 9 ~~-~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KG-KFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CS-CEEEEEESTTSSHHHHHHHH
T ss_pred cC-CEEEEEcCCCCCHHHHHHHH
Confidence 56 79999999999999999999
No 331
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.02 E-value=0.026 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.1
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| .+++|+|+.||||||+.+.+
T Consensus 7 ~~~-~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 7 RRG-ALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCC-CEEEEEESTTSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 456 79999999999999999999
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.96 E-value=0.029 Score=52.38 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||.||||||+.+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 68899999999999999998
No 333
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.93 E-value=0.055 Score=57.70 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.6
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+..+ ..++|+|+||+|||||++.+
T Consensus 18 ~i~~~-~kvgIVG~pnvGKSTL~n~L 42 (396)
T 2ohf_A 18 RFGTS-LKIGIVGLPNVGKSTFFNVL 42 (396)
T ss_dssp CSSSC-CCEEEECCSSSSHHHHHHHH
T ss_pred hccCC-CEEEEECCCCCCHHHHHHHH
Confidence 34456 67899999999999999999
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.92 E-value=0.029 Score=52.69 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|++||||||++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999887
No 335
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.76 E-value=0.21 Score=55.30 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHhh---hHHHH--hhCccccCCCCC---CccHHHHHHHHcCCchhh--ccccccchHHHH
Q 007057 351 TRVVVITGPNTGGKTASMKTLGL---ASLMS--KAGLYLPAKNHP---RLPWFDLILADIGDHQSL--EQNLSTFSGHIS 420 (620)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLk~iGl---i~~~a--~~G~~vp~~~~~---~l~~~d~i~~~ig~~~~~--~~~~s~lSgg~k 420 (620)
..+++|+|+-|.|||||.+.+.- ..+.. ....++..+... .......++..++..... .......+.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 37999999999999999998831 11111 112344333321 123445667766654221 111112111222
Q ss_pred HHHHHHHhcCC-CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhHHhh
Q 007057 421 RIVDILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (620)
Q Consensus 421 rl~~i~~l~~~-~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l~~~ 479 (620)
.-.+...+..+ +-||+||-.-. . ..+. +.. ..|..||+||-+..+...
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~---~---~~~~--~~~---~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQ---E---ETIR--WAQ---ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECC---H---HHHH--HHH---HTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHcCCCcEEEEEECCCC---c---hhhc--ccc---cCCCEEEEEcCCHHHHHH
Confidence 22222335564 78999997654 1 1111 111 157889999998776544
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.59 E-value=0.04 Score=51.36 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.58 E-value=0.025 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.7
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..+ .+++|+|+.||||||+.+.+
T Consensus 10 ~~~-~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 10 RKC-KIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHS-CEEEEEECTTSSHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHH
Confidence 445 78999999999999999998
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.57 E-value=0.035 Score=53.25 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.55 E-value=0.036 Score=51.78 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 340
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.52 E-value=0.22 Score=47.85 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHHHhc--CCCcEEEEcCCCCC--CCHHHHHHHHHHHHHHHhcC--CcEEEEEccCh--hHHhhccccceeeC
Q 007057 422 IVDILELV--SRESLVLIDEIGSG--TDPSEGVALATSILQYLRDR--VGLAVVTTHYA--DLSCLKDKDTRFEN 488 (620)
Q Consensus 422 l~~i~~l~--~~~~LlLLDEpt~g--lD~~~~~~l~~all~~l~~~--~~~vli~TH~~--~l~~~~~~~~~~~~ 488 (620)
+..++..+ .+.+||||||.+.. ++......+.. .+.++ ...+|+|+++. ++..+||.+..+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~----~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS----ALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHH----HHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHH----HHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 34444555 56799999999752 12222223333 33332 45789999985 37788887766654
No 341
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.49 E-value=0.024 Score=53.73 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.4
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++..... .++|+|++|+|||||++.+
T Consensus 18 ~~~~~~~~~--ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 18 FLGLYKKTG--KLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHTCTTCCE--EEEEEEETTSSHHHHHHHH
T ss_pred HhhccCCCc--EEEEECCCCCCHHHHHHHH
Confidence 556666555 5789999999999999999
No 342
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.47 E-value=0.037 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.5
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++++..... .++|+|++|+|||||++.+
T Consensus 16 ~~~~~~~~~--ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 16 SLGLWNKHG--KLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp --------C--EEEEEESTTSSHHHHHHHH
T ss_pred HhhccCCcc--EEEEECCCCCCHHHHHHHH
Confidence 555655554 6799999999999999998
No 343
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.46 E-value=0.094 Score=60.86 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
+-+.|.||.|+|||++.|.+
T Consensus 239 ~GILL~GPPGTGKT~LArai 258 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 344
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.42 E-value=0.036 Score=58.52 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHH
Q 007057 350 ETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLk~i 371 (620)
|..+++|+|+||+|||||++.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4356899999999999999999
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.40 E-value=0.034 Score=51.13 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.40 E-value=0.043 Score=54.75 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.37 E-value=0.042 Score=50.30 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.29 E-value=0.041 Score=52.79 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.25 E-value=0.049 Score=51.64 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999988
No 350
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.10 E-value=0.043 Score=54.97 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 351
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.06 E-value=0.045 Score=53.11 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 352
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.04 E-value=0.022 Score=53.29 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 25 ki~v~G~~~~GKSsli~~l 43 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5799999999999999998
No 353
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.03 E-value=0.031 Score=57.05 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 354
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.03 E-value=0.045 Score=59.03 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+||+|||||++.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.92 E-value=0.14 Score=55.17 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iG 372 (620)
.+++|+||+|+||||+...++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999983
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.92 E-value=0.055 Score=52.18 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.88 E-value=0.052 Score=52.74 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.85 E-value=0.026 Score=66.17 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iG 372 (620)
..+.|+||+|+|||++.+.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999993
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.78 E-value=0.061 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 360
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.71 E-value=0.057 Score=51.62 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.70 E-value=0.048 Score=52.70 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 362
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.059 Score=50.18 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 363
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.59 E-value=0.12 Score=58.15 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+ .+++|+||.|+||||++..+
T Consensus 163 ~~-~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 163 TR-RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp TB-SEEEEECCTTSTHHHHHHHH
T ss_pred cC-CCEEEEeCCCCCHHHHHHHH
Confidence 35 79999999999999999887
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.56 E-value=0.058 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 365
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.54 E-value=0.064 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
++++|+|+.||||||+-+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 366
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.54 E-value=0.059 Score=53.31 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999988
No 367
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.49 E-value=0.37 Score=48.53 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHhHHHHHH
Q 007057 354 VVITGPNTGGKTASMKTL 371 (620)
Q Consensus 354 ~~I~GpNGsGKSTlLk~i 371 (620)
+.|.||.|+||||+.+.+
T Consensus 45 ~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 899999999999999999
No 368
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.47 E-value=0.055 Score=57.27 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+||+||||||+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 46799999999999999998
No 369
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.45 E-value=0.069 Score=56.41 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|++|+|||||++.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp SEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999
No 370
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.42 E-value=0.05 Score=50.68 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+-+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 371
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.39 E-value=0.09 Score=47.91 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999999
No 372
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.38 E-value=0.06 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHh
Q 007057 351 TRVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLk~iG 372 (620)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999993
No 373
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.34 E-value=0.1 Score=46.95 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 374
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.29 E-value=0.066 Score=48.18 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999998
No 375
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.25 E-value=0.048 Score=50.15 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 376
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.23 E-value=0.29 Score=50.61 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH-hhhHHHHhhC-------ccccCCC-CCCccHHHHHHHHcCCchhhccccccchHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAG-------LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i-Gli~~~a~~G-------~~vp~~~-~~~l~~~d~i~~~ig~~~~~~~~~s~lSgg~ 419 (620)
.+ ..+.|.||.|+|||++.+.+ .-+.-.+..+ .++.+.. ......+..++..+.... . .... .+
T Consensus 44 ~~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-~--~~~~---~~ 116 (318)
T 3te6_A 44 QN-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-L--CGDI---SL 116 (318)
T ss_dssp CC-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-----CCC---CH
T ss_pred CC-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-C--CchH---HH
Confidence 45 67899999999999999999 2221111111 0111111 011124556666653221 1 0000 11
Q ss_pred HHHHHHHH----hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEccChh
Q 007057 420 SRIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD 475 (620)
Q Consensus 420 krl~~i~~----l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~--~~~vli~TH~~~ 475 (620)
..+..... .-..+-+++|||.-.=. ....|.. +++..... ..++|.++.+.+
T Consensus 117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~-l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 117 EALNFYITNVPKAKKRKTLILIQNPENLL---SEKILQY-FEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHH-HHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhhhccCCceEEEEecHHHhh---cchHHHH-HHhcccccCCcEEEEEEecCcc
Confidence 22222222 23566799999986655 2233333 44432222 346677787765
No 377
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.18 E-value=0.092 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 378
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.17 E-value=0.082 Score=47.25 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 379
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.17 E-value=0.074 Score=53.78 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|++||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 380
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.13 E-value=0.094 Score=47.26 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.10 E-value=0.085 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| .+++|.||.||||||+++.+
T Consensus 5 ~g-~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TG-LFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHH
T ss_pred Cc-eEEEEEcCCCCCHHHHHHHH
Confidence 57 89999999999999999998
No 382
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.07 E-value=0.086 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++ .+++|+||.||||||+.+.+
T Consensus 28 ~~-~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PD-GRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.07 E-value=0.075 Score=47.59 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 384
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.03 E-value=0.071 Score=50.01 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=4.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKssli~~l 40 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMF 40 (208)
T ss_dssp EEEEEC--------------
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 385
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.98 E-value=0.077 Score=47.37 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 386
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.98 E-value=0.073 Score=51.12 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 387
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.97 E-value=0.12 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 388
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.91 E-value=0.078 Score=47.50 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 389
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.91 E-value=0.095 Score=50.32 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCceEEEEEcCCCCcHh-HHHHHHhhhHHHHhhCccc-cCCCCCCccHHHHHHHHcCCchh--hccccccchHHHHHHHH
Q 007057 349 CETRVVVITGPNTGGKT-ASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQS--LEQNLSTFSGHISRIVD 424 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKS-TlLk~iGli~~~a~~G~~v-p~~~~~~l~~~d~i~~~ig~~~~--~~~~~s~lSgg~krl~~ 424 (620)
.| ++..|+||-|+||| -||+.++-...-.+...++ |.-. .+.+ +.+.+.+|..-. .......|-.
T Consensus 19 ~g-~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D-~R~~--~~i~S~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 19 RG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTC-CCGG--GSCCHHHHHHSEEEEESSGGGGHH-------
T ss_pred ce-EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccC-ccch--hhhhhccCCcccceecCCHHHHHH-------
Confidence 47 89999999999999 6777775544332222333 4321 2322 223333332110 0111122211
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccChhH
Q 007057 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (620)
Q Consensus 425 i~~l~~~~~LlLLDEpt~glD~~~~~~l~~all~~l~~~~~~vli~TH~~~l 476 (620)
...+.++|++||.=-= + + +.+ +++.+.+.|..||++.++.+.
T Consensus 88 ---~~~~~DvIlIDEaQFf--k-~---~ve-~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQFF--P-D---IVE-FCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp ---HHHTCSEEEESSGGGC--T-T---HHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred ---hccCCCEEEEEchhhh--H-H---HHH-HHHHHHHCCCeEEEEeccccc
Confidence 1245789999997332 2 1 222 335566678999999998764
No 390
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.90 E-value=0.078 Score=47.70 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 391
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.86 E-value=0.08 Score=48.31 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46799999999999999998
No 392
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.85 E-value=0.084 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHH
Q 007057 350 ETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLk~i 371 (620)
| .+.+|+||.|+||||++-.+
T Consensus 3 g-~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 G-KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp C-CEEEEEESTTSSHHHHHHHH
T ss_pred c-EEEEEECCCCCCHHHHHHHH
Confidence 6 78999999999999998444
No 393
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.80 E-value=0.083 Score=48.16 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 394
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.79 E-value=0.076 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.74 E-value=0.084 Score=47.43 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.73 E-value=0.084 Score=47.71 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 397
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.73 E-value=0.085 Score=47.88 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5799999999999999999
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.63 E-value=0.076 Score=52.23 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.3
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+| .+++|.||.||||||+.+.+
T Consensus 23 ~~g-~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARG-KFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCC-CEEEEECCC---CHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 399
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.60 E-value=0.07 Score=59.44 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.4
Q ss_pred cccceecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 342 ~vsl~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
++.+.+..+ .-++|.|..||||||+|+++
T Consensus 206 pv~~DL~k~-pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 206 PIITDLAKM-PHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEEEEGGGS-CCEEEECCTTSSHHHHHHHH
T ss_pred EEEEEhhhC-CeeEEECCCCCCHHHHHHHH
Confidence 444555555 57899999999999999998
No 400
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.58 E-value=0.083 Score=47.64 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 401
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.52 E-value=0.097 Score=52.79 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|++|+|||||++.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L 23 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLI 23 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 402
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.48 E-value=0.085 Score=48.88 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999988
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.47 E-value=0.1 Score=47.19 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 404
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.38 E-value=0.12 Score=47.58 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 405
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.30 E-value=0.091 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 406
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.28 E-value=0.1 Score=51.63 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| .+++|.||.||||||+++.+
T Consensus 26 ~~-~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NA-KFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CC-CEEEEEESTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 57 89999999999999999998
No 407
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.26 E-value=0.092 Score=48.57 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.19 E-value=0.1 Score=47.97 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.19 E-value=0.11 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| .+++|.|+.||||||.++.+
T Consensus 2 ~g-~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RS-KYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CC-CEEEEEECTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 36 79999999999999999998
No 410
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.15 E-value=0.1 Score=46.84 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.14 E-value=0.098 Score=47.65 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 412
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.07 E-value=0.12 Score=56.05 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+|+.|+|||||++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 57999999999999999999
No 413
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.03 E-value=0.11 Score=48.48 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
=.++|+|+.|+|||||++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36799999999999999876
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.99 E-value=0.11 Score=46.61 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 2 ki~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999998
No 415
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.98 E-value=0.12 Score=55.47 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|++||||||+.+.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 89999999999999999998
No 416
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.97 E-value=0.14 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.95 E-value=0.13 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred eecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 346 KVECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 346 ~i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.+... ++++|+||.||||||.-+.|
T Consensus 25 ~~~k~-kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 25 KLAKA-KVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CTTSC-EEEEEECCTTCCHHHHHHHH
T ss_pred hccCC-cEEEEECCCCCCHHHHHHHH
Confidence 34455 89999999999999999988
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.94 E-value=0.1 Score=47.40 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 419
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.94 E-value=0.11 Score=47.85 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.92 E-value=0.11 Score=48.34 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.88 E-value=0.11 Score=47.51 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.88 E-value=0.12 Score=49.81 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-+++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.85 E-value=0.12 Score=53.94 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+||||||+.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 48999999999999999988
No 424
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.83 E-value=0.12 Score=47.06 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 425
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.76 E-value=0.12 Score=47.06 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 426
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.62 E-value=0.7 Score=51.16 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHH
Q 007057 351 TRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLk~i 371 (620)
..+++|+||-|.|||||.+.+
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 379999999999999999988
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.59 E-value=0.12 Score=47.66 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 428
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.58 E-value=0.13 Score=47.03 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 429
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.58 E-value=0.13 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.56 E-value=0.15 Score=52.72 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+|+|||||.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 68999999999999999988
No 431
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.55 E-value=0.14 Score=47.50 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36799999999999999999
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.54 E-value=0.14 Score=47.08 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l 38 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQF 38 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36799999999999999998
No 433
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.54 E-value=0.14 Score=50.10 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|.|+.||||||+.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.13 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 11 ~~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36799999999999999998
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.48 E-value=0.17 Score=46.95 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 436
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.47 E-value=0.12 Score=47.84 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998
No 437
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.42 E-value=0.13 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46799999999999999998
No 438
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.41 E-value=0.16 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred cCCceEEEEEcCCCCcHhHHHHHH
Q 007057 348 ECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..| .+++|.|+.||||||+.+.+
T Consensus 19 ~~~-~~i~~~G~~g~GKst~~~~l 41 (223)
T 3ld9_A 19 PGS-MFITFEGIDGSGKTTQSHLL 41 (223)
T ss_dssp CCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHH
Confidence 357 89999999999999999998
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.40 E-value=0.14 Score=53.00 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+||||||+-+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58899999999999999988
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.34 E-value=0.12 Score=49.51 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.33 E-value=0.15 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| ..++|+||.|+|||||...+
T Consensus 33 ~g-~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YG-LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TT-EEEEEECCCTTTTHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
Confidence 46 78999999999999998887
No 442
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.31 E-value=0.12 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.31 E-value=0.14 Score=47.98 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.26 E-value=0.14 Score=46.94 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.22 E-value=0.16 Score=48.19 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999988
No 446
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.21 E-value=0.15 Score=47.80 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 46799999999999999998
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.19 E-value=0.14 Score=48.89 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+|+.|+|||||++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999988
No 448
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.17 E-value=0.52 Score=48.24 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.+.||.|+||||+.+.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 449
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.13 E-value=0.15 Score=46.81 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999998
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.09 E-value=0.16 Score=46.87 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 451
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.95 E-value=0.17 Score=49.19 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+|+.||||||+.+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.14 Score=47.58 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999998
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.92 E-value=0.17 Score=52.17 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||+|+|||||...+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 68999999999999999988
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.91 E-value=0.16 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
+| .+++|.|+.||||||..+.+
T Consensus 4 ~g-~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RG-KLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CC-CEEEEEECSSSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 57 89999999999999999998
No 455
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.88 E-value=0.15 Score=47.23 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 456
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.86 E-value=1.9 Score=44.27 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..+.+.||.|+||||+.+.+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHH
Confidence 46899999999999999998
No 457
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.80 E-value=0.15 Score=47.61 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 458
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.70 E-value=0.18 Score=58.01 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.+.|+||.|+|||++.+.+
T Consensus 490 ~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6899999999999999999
No 459
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.68 E-value=0.18 Score=49.84 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 460
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.68 E-value=0.16 Score=47.40 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 461
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.62 E-value=0.15 Score=48.00 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 462
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.62 E-value=0.17 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998
No 463
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.58 E-value=0.17 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 23 ki~v~G~~~~GKSsli~~l 41 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999998
No 464
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.48 E-value=0.18 Score=46.83 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 465
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.39 E-value=0.19 Score=51.43 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|++|+|||||++.+
T Consensus 9 ~V~ivG~~nvGKSTLln~l 27 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNL 27 (301)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 466
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.38 E-value=0.18 Score=47.41 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|++|+|||||++.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 467
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.36 E-value=0.18 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 468
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.32 E-value=0.18 Score=47.30 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.32 E-value=0.18 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36799999999999999998
No 470
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.31 E-value=0.2 Score=46.57 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+|+.|+|||||++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.29 E-value=0.18 Score=46.82 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.26 E-value=0.2 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 473
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.19 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l 48 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRF 48 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 474
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.19 E-value=0.17 Score=47.55 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHH
Confidence 56899999999999999998
No 475
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.16 E-value=0.1 Score=60.16 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.-++|+||.|+||||+.+.+
T Consensus 208 ~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHH
Confidence 67899999999999999999
No 476
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.15 E-value=0.16 Score=47.11 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.13 E-value=0.2 Score=51.27 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-+++|+|+.|+|||||++.+
T Consensus 11 g~v~ivG~~nvGKSTLin~l 30 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNL 30 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 48999999999999999999
No 478
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.11 E-value=0.19 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
..++|+|+.|+|||||++.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 67899999999999999988
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.10 E-value=0.18 Score=47.55 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 480
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.06 E-value=0.17 Score=50.61 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++++
T Consensus 10 ~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 481
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.05 E-value=0.19 Score=47.11 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~~GKSsli~~l 48 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRL 48 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 56899999999999999998
No 482
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.00 E-value=0.21 Score=48.21 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
+++|+||.||||+|.-+.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 483
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.96 E-value=0.19 Score=49.52 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 484
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.96 E-value=4 Score=43.78 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHh
Q 007057 352 RVVVITGPNTGGKTASMKTLG 372 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~iG 372 (620)
.+++++|++|+||||+.-.++
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999988773
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.94 E-value=0.18 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.91 E-value=0.2 Score=49.86 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 487
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.89 E-value=0.16 Score=46.43 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 9 ki~~vG~~~vGKTsli~~l 27 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRF 27 (178)
T ss_dssp EEEEECCGGGCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.89 E-value=0.14 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.6
Q ss_pred ecCCceEEEEEcCCCCcHhHHHHHH
Q 007057 347 VECETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 347 i~~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
..++ .+++|.|+-||||||+.+.+
T Consensus 21 ~~~~-~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 21 GTRI-KKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp --CC-EEEEEECSTTSSHHHHHTTT
T ss_pred ccCc-eEEEEECCCCCCHHHHHHHH
Confidence 3466 89999999999999999998
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.82 E-value=0.24 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=19.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHH
Q 007057 349 CETRVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLk~i 371 (620)
.| .-++|+|++|+||||+...+
T Consensus 15 ~G-~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DK-MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TT-EEEEEEESSSSSHHHHHHHH
T ss_pred CC-EEEEEEcCCCCCHHHHHHHH
Confidence 46 78999999999999998776
No 490
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.82 E-value=0.2 Score=46.80 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l 40 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSY 40 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.79 E-value=0.2 Score=47.12 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l 40 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.75 E-value=0.25 Score=47.58 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|=|+-||||||..+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L 22 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEV 22 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 68999999999999999988
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.68 E-value=0.19 Score=47.76 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l 48 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVF 48 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 494
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.66 E-value=0.19 Score=46.38 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l 41 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQF 41 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46799999999999999999
No 495
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.61 E-value=0.22 Score=47.32 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHhHHHHHH
Q 007057 353 VVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 353 ~~~I~GpNGsGKSTlLk~i 371 (620)
.++|+|+.|+|||||++.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l 45 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRY 45 (217)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 496
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.60 E-value=0.22 Score=46.33 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l 41 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKF 41 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHH
Confidence 36799999999999999888
No 497
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.55 E-value=0.25 Score=51.40 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
.+++|+||.|+|||||-+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.53 E-value=0.2 Score=47.72 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l 54 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVF 54 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 36899999999999999999
No 499
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.52 E-value=0.24 Score=46.95 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l 27 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRL 27 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 500
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.50 E-value=0.15 Score=46.86 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=9.6
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 007057 352 RVVVITGPNTGGKTASMKTL 371 (620)
Q Consensus 352 ~~~~I~GpNGsGKSTlLk~i 371 (620)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l 28 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRF 28 (183)
T ss_dssp EEEEEECCCCC---------
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
Done!