BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007059
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 190 bits (482), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/124 (72%), Positives = 104/124 (83%)
Query: 365 VRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGR 424
VRRVP F MD++LLDAICERL L T +YL+REGDPVNEM+FIIRG++ES TT+GGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 425 AGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVAS 484
+GFYN LK GDFCG+ELLTWAL P S NLP STRTVK+LTEVEAFAL A++LKFVAS
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 485 QFKR 488
QF+R
Sbjct: 128 QFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
+ R +D ++++R +LP+ L +R+ Q W G+D +L+ P +LR I HL
Sbjct: 14 YHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHL 73
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
+ ++P F + L ++ + +S +LIR+GD + + F+ G +E
Sbjct: 74 NKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD 132
Query: 421 NGGRAGFYNSITLKSGDFCGEELLT 445
N A L GD G + LT
Sbjct: 133 NTVLA------ILGKGDLIGSDSLT 151
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
+R + + EE+M++R+LP LR ++ + +Y++ + DE I + + +R+ + +
Sbjct: 10 YREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYN 68
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V VPFF D + + L + Y+I+EG + M FI +G V+ +
Sbjct: 69 CRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS 128
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
+G A +L G + GE
Sbjct: 129 DGVIA-----TSLSDGSYFGE 144
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 14 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFN 72
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V S T
Sbjct: 73 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 131
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + + L G + GE
Sbjct: 132 KGNK-----EMKLSDGSYFGE 147
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 11 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFN 69
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V S T
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 128
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + + L G + GE
Sbjct: 129 KGNK-----EMKLSDGSYFGE 144
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 11 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFN 69
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V S T
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 128
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + + L G + GE
Sbjct: 129 KGNK-----EMKLSDGSYFGE 144
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 11 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFN 69
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V S T
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 128
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + + L G + GE
Sbjct: 129 KGNK-----EMKLSDGSYFGE 144
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 9 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFN 67
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V S T
Sbjct: 68 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 126
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + + L G + GE
Sbjct: 127 KGNK-----EMKLSDGSYFGE 142
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+R+ + ++++ + DEESIL L LR I
Sbjct: 8 YQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFN 66
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + ++ +L + Y+IREG +M FI G V S T
Sbjct: 67 CRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 125
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + L G + GE
Sbjct: 126 KGNK-----ETKLADGSYFGE 141
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+R+ + ++++ + DEESIL L LR I
Sbjct: 8 YQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFN 66
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + ++ +L + Y+IREG +M FI G V S T
Sbjct: 67 CRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 125
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + L G + GE
Sbjct: 126 KGNK-----ETKLADGSYFGE 141
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP +R+++ + ++++ + DEE+IL L LR I
Sbjct: 14 YQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNFN 72
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V +P FA D + A+ +L + Y+IREG +M FI G V T
Sbjct: 73 CRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHG-VAGVIT 131
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
+ + L G + GE
Sbjct: 132 KSSK-----EMKLTDGSYFGE 147
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 304 RRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLA 363
+ + E++M +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGG 423
V +P FA D + A+ +L + Y+IREG +M FI G V S T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKGN 133
Query: 424 RAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVA 483
+ + L G + GE +S L T +V++ T ++L ++ V
Sbjct: 134 K-----EMKLSDGSYFGE---------ISLLTRGRRTASVRADTYSRLYSLSVDNFNEVL 179
Query: 484 SQF 486
++
Sbjct: 180 EEY 182
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++M +LP R+R+ + ++++ + DEESIL L LR I
Sbjct: 14 YQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFN 72
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
V +P FA D + ++ +L + Y+IREG +M FI G V S T
Sbjct: 73 XRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLT 131
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + L G + GE
Sbjct: 132 KGNK-----ETKLADGSYFGE 147
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 301 WRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360
++ + + E++ +LP R+++ + ++++ + DE+SIL L LR I
Sbjct: 11 YQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNFN 69
Query: 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420
C V P FA D + A +L + Y+IREG + FI G V S T
Sbjct: 70 CRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV-SVLT 128
Query: 421 NGGRAGFYNSITLKSGDFCGE 441
G + L G + GE
Sbjct: 129 KGNK-----EXKLSDGSYFGE 144
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 229 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 288
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 289 ELGPGAFFGEMALISGE-------------------PRSA-TVSAATTVSLLSLHSADFQ 328
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 329 MLCS-----SSPEIAEIFRKTALERRGAAAS 354
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 71
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 72 ELGPGAFFGEMALISGE-------------------PRSA-TVSAATTVSLLSLHSADFQ 111
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 112 MLCSS-----SPEIAEIFRKTALEARGAAAS 137
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 75
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 76 ELGPGAFFGEMALISGE-------------------PRSA-TVSAATTVSLLSLHSADFQ 115
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 116 MLCSS-----SPEIAEIFRKTALERRGAAAS 141
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 71
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 72 ELGPGAFFGEMALISGE-------------------PRSA-TVSAATTVSLLSLHSADFQ 111
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 112 MLCSS-----SPEIAEIFRKTALERRGAAAS 137
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 73
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 74 ELGPGAFFGEMALISGE-------------------PRSA-TVSAATTVSLLSLHSADFQ 113
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 114 MLCSS-----SPEIAEIFRKTALERRGAAAS 139
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 73
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 74 ELGPGAFFGEMALISGE------------PESA--------TVSAATTVSLLSLHSADFQ 113
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 114 MLCSS-----SPEIAEIFRKTALERRGAAAS 139
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG- 422
V VP F ++ +L I L + + R G+P + M F++ G V +T N
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 73
Query: 423 --GRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480
G F+ + L SG+ P S TV + T V +L + D +
Sbjct: 74 ELGPGAFFGEMALISGE-------------------PWSA-TVSAATTVSLLSLHSADFQ 113
Query: 481 FVASQFKRLHSKRLQHAFRYYSHQWRGWGAS 511
+ S S + FR + + RG AS
Sbjct: 114 MLCSS-----SPEIAEIFRKTALERRGAAAS 139
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN 421
+ F++ VP F + +++L + + L + Y+IR+G + I +G+V + +
Sbjct: 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED 215
Query: 422 GGRAGFYNSITLKSGDFCGEELL 444
TL GD+ GE+ L
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQV 415
L V ++ F + + +C RD L+ EGDP + ++ I+ G+V
Sbjct: 38 LEIVNKIKLFGDFSNEEVRYLCSYXQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 342 ESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREG 401
E +LQ P D+R I HL + P F L A+ + + G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 402 DPVNEMIFIIRGQVE 416
+ V+ + F++ G +E
Sbjct: 66 ESVDSLCFVVSGSLE 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,103,218
Number of Sequences: 62578
Number of extensions: 663868
Number of successful extensions: 1554
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 25
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)