Query 007059
Match_columns 619
No_of_seqs 425 out of 3110
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1E-110 2E-115 932.3 47.4 529 3-616 111-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 3E-61 6.6E-66 565.3 48.9 408 9-499 92-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.5E-60 3.3E-65 495.1 38.2 397 7-493 27-430 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 8.5E-56 1.8E-60 462.8 24.1 419 9-495 249-667 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.1E-51 2.4E-56 433.7 31.4 383 9-491 261-646 (815)
6 PRK09392 ftrB transcriptional 99.6 3.2E-14 7E-19 143.4 16.7 127 362-499 6-132 (236)
7 KOG3713 Voltage-gated K+ chann 99.5 6.7E-14 1.5E-18 148.6 14.5 193 8-298 239-437 (477)
8 PRK11753 DNA-binding transcrip 99.5 1.6E-12 3.5E-17 128.4 19.0 115 372-496 6-121 (211)
9 PF00520 Ion_trans: Ion transp 99.5 4E-13 8.7E-18 130.1 13.5 193 13-287 1-200 (200)
10 PRK11161 fumarate/nitrate redu 99.4 7.2E-12 1.6E-16 126.1 16.1 121 365-497 15-137 (235)
11 cd00038 CAP_ED effector domain 99.4 4.4E-12 9.5E-17 110.9 12.7 111 370-491 1-112 (115)
12 PRK10402 DNA-binding transcrip 99.4 8.7E-12 1.9E-16 125.0 14.1 111 376-497 21-132 (226)
13 smart00100 cNMP Cyclic nucleot 99.3 2.9E-11 6.2E-16 106.2 14.5 116 370-493 1-116 (120)
14 PF00027 cNMP_binding: Cyclic 99.3 1.3E-11 2.8E-16 104.2 11.2 90 389-488 2-91 (91)
15 COG0664 Crp cAMP-binding prote 99.3 1.3E-10 2.8E-15 114.0 17.6 122 367-499 4-126 (214)
16 PRK09391 fixK transcriptional 99.2 1.6E-10 3.5E-15 116.2 15.7 106 380-499 32-138 (230)
17 KOG0614 cGMP-dependent protein 99.2 6.6E-11 1.4E-15 125.7 8.5 126 359-493 268-394 (732)
18 KOG1545 Voltage-gated shaker-l 99.2 4E-12 8.6E-17 129.0 -0.6 51 241-291 396-446 (507)
19 TIGR03697 NtcA_cyano global ni 99.1 8.9E-10 1.9E-14 107.2 15.5 127 394-533 1-128 (193)
20 PRK13918 CRP/FNR family transc 99.1 2E-09 4.3E-14 105.6 15.8 127 385-533 5-134 (202)
21 PLN02868 acyl-CoA thioesterase 99.1 6.3E-10 1.4E-14 121.6 13.2 113 362-487 7-119 (413)
22 KOG1419 Voltage-gated K+ chann 99.1 1.2E-09 2.7E-14 116.8 13.0 88 236-330 267-354 (654)
23 KOG0614 cGMP-dependent protein 99.1 3.7E-10 8E-15 120.1 8.4 117 356-487 147-263 (732)
24 COG2905 Predicted signal-trans 99.0 3.3E-09 7E-14 114.6 13.8 117 362-492 6-122 (610)
25 KOG1113 cAMP-dependent protein 99.0 8.5E-10 1.8E-14 112.8 8.3 116 362-492 121-236 (368)
26 KOG4390 Voltage-gated A-type K 98.8 2.3E-10 5.1E-15 117.1 -4.5 182 7-291 225-413 (632)
27 PF07885 Ion_trans_2: Ion chan 98.7 5.9E-08 1.3E-12 80.7 7.7 55 238-292 24-78 (79)
28 KOG1113 cAMP-dependent protein 98.7 6.3E-08 1.4E-12 99.3 9.0 119 356-488 233-351 (368)
29 KOG1420 Ca2+-activated K+ chan 98.2 1.9E-06 4.2E-11 92.5 6.7 137 236-380 286-427 (1103)
30 PRK10537 voltage-gated potassi 98.0 0.0002 4.3E-09 77.6 16.1 54 238-291 168-221 (393)
31 KOG2968 Predicted esterase of 98.0 1.2E-05 2.6E-10 90.8 6.7 115 377-501 499-613 (1158)
32 KOG3684 Ca2+-activated K+ chan 97.8 0.0013 2.8E-08 70.3 18.5 91 236-334 285-375 (489)
33 PF01007 IRK: Inward rectifier 97.7 0.00022 4.8E-09 75.4 10.6 61 237-297 83-145 (336)
34 KOG2968 Predicted esterase of 97.3 0.0015 3.3E-08 74.5 11.2 113 381-496 110-222 (1158)
35 KOG1418 Tandem pore domain K+ 97.0 0.0011 2.5E-08 71.9 6.9 59 239-297 116-174 (433)
36 PRK11832 putative DNA-binding 96.8 0.026 5.6E-07 55.4 13.6 98 377-488 13-111 (207)
37 PF04831 Popeye: Popeye protei 96.8 0.062 1.3E-06 49.7 14.7 109 373-491 14-124 (153)
38 KOG3542 cAMP-regulated guanine 96.0 0.018 3.8E-07 63.9 7.7 113 360-487 278-392 (1283)
39 KOG4404 Tandem pore domain K+ 94.7 0.17 3.8E-06 52.2 9.2 57 238-294 186-250 (350)
40 KOG3827 Inward rectifier K+ ch 94.3 0.27 5.8E-06 52.0 9.8 60 238-297 112-173 (400)
41 KOG4404 Tandem pore domain K+ 91.6 0.025 5.5E-07 58.2 -2.3 48 236-283 78-125 (350)
42 KOG3193 K+ channel subunit [In 91.6 0.23 5E-06 54.2 4.8 30 240-269 219-248 (1087)
43 PLN03223 Polycystin cation cha 90.0 30 0.00065 42.9 20.4 31 264-294 1395-1425(1634)
44 KOG3542 cAMP-regulated guanine 89.9 0.53 1.1E-05 52.8 5.6 92 362-476 36-127 (1283)
45 KOG1418 Tandem pore domain K+ 88.7 0.088 1.9E-06 57.1 -1.3 50 237-286 241-298 (433)
46 KOG3676 Ca2+-permeable cation 87.0 55 0.0012 38.3 19.3 76 251-327 601-683 (782)
47 KOG0498 K+-channel ERG and rel 84.0 12 0.00026 43.8 12.5 92 264-360 324-442 (727)
48 KOG2302 T-type voltage-gated C 83.3 46 0.001 39.8 16.4 36 258-293 1354-1390(1956)
49 KOG2301 Voltage-gated Ca2+ cha 76.8 27 0.00058 44.6 13.0 45 8-72 871-916 (1592)
50 TIGR00870 trp transient-recept 76.8 1.7E+02 0.0036 34.7 23.0 45 262-306 586-631 (743)
51 PF07883 Cupin_2: Cupin domain 73.0 5.5 0.00012 31.3 4.1 45 389-440 3-48 (71)
52 COG4709 Predicted membrane pro 70.0 21 0.00046 34.4 7.7 70 305-376 7-80 (195)
53 PF14377 DUF4414: Domain of un 68.3 8.1 0.00018 34.0 4.4 45 315-359 51-105 (108)
54 TIGR03037 anthran_nbaC 3-hydro 67.7 18 0.0004 34.1 6.8 58 404-478 48-105 (159)
55 PRK13290 ectC L-ectoine syntha 65.7 36 0.00079 30.7 8.2 69 387-474 38-106 (125)
56 PF13314 DUF4083: Domain of un 63.4 35 0.00075 26.4 6.2 51 263-313 3-56 (58)
57 PF08006 DUF1700: Protein of u 62.4 50 0.0011 31.7 9.1 54 305-360 7-64 (181)
58 PF07697 7TMR-HDED: 7TM-HD ext 61.5 43 0.00093 32.8 8.7 58 347-405 147-207 (222)
59 PRK13264 3-hydroxyanthranilate 57.6 22 0.00047 34.2 5.4 62 402-480 52-113 (177)
60 PF00060 Lig_chan: Ligand-gate 50.8 15 0.00032 33.4 3.1 75 235-315 41-115 (148)
61 PF10011 DUF2254: Predicted me 49.1 1.3E+02 0.0027 32.6 10.4 64 235-298 97-160 (371)
62 KOG2301 Voltage-gated Ca2+ cha 48.9 4.6E+02 0.01 34.0 16.3 72 56-144 500-572 (1592)
63 PF05899 Cupin_3: Protein of u 47.0 29 0.00062 28.2 3.9 42 391-440 14-55 (74)
64 PF08016 PKD_channel: Polycyst 43.8 4.7E+02 0.01 28.6 15.8 20 52-71 233-253 (425)
65 KOG3614 Ca2+/Mg2+-permeable ca 41.9 8.3E+02 0.018 30.9 16.3 65 52-124 853-919 (1381)
66 PF14377 DUF4414: Domain of un 41.9 59 0.0013 28.5 5.4 49 316-364 8-69 (108)
67 KOG3599 Ca2+-modulated nonsele 41.3 7.1E+02 0.015 30.0 20.5 15 55-69 492-507 (798)
68 KOG1054 Glutamate-gated AMPA-t 40.1 35 0.00077 38.5 4.3 71 241-317 598-668 (897)
69 KOG3609 Receptor-activated Ca2 39.8 7.3E+02 0.016 29.7 14.8 25 7-31 414-438 (822)
70 PF13623 SurA_N_2: SurA N-term 38.4 1.6E+02 0.0035 27.3 7.9 45 270-314 10-67 (145)
71 smart00835 Cupin_1 Cupin. This 37.8 1E+02 0.0022 28.2 6.6 55 386-442 32-88 (146)
72 COG0662 {ManC} Mannose-6-phosp 36.8 98 0.0021 27.8 6.1 48 385-439 37-85 (127)
73 COG1917 Uncharacterized conser 35.8 91 0.002 27.9 5.8 50 386-442 45-95 (131)
74 PLN03192 Voltage-dependent pot 34.8 8.8E+02 0.019 29.2 22.1 42 315-361 357-398 (823)
75 KOG4440 NMDA selective glutama 32.6 1.4E+02 0.0031 34.1 7.4 52 241-292 616-667 (993)
76 COG1377 FlhB Flagellar biosynt 30.4 7.2E+02 0.016 26.8 14.7 29 300-328 219-247 (363)
77 PF14841 FliG_M: FliG middle d 29.8 81 0.0018 25.9 4.0 39 342-388 30-68 (79)
78 PF02037 SAP: SAP domain; Int 29.7 1.1E+02 0.0023 21.0 3.9 26 304-329 5-35 (35)
79 COG4016 Uncharacterized protei 29.4 15 0.00033 33.3 -0.4 27 575-614 45-72 (165)
80 PF00520 Ion_trans: Ion transp 28.0 2.4E+02 0.0052 26.1 7.6 23 137-159 101-123 (200)
81 COG5559 Uncharacterized conser 27.6 61 0.0013 25.1 2.5 18 343-360 6-23 (65)
82 PF12973 Cupin_7: ChrR Cupin-l 27.5 1.5E+02 0.0032 24.8 5.3 64 385-473 25-88 (91)
83 PF06249 EutQ: Ethanolamine ut 27.4 1.9E+02 0.0041 27.2 6.3 50 404-474 95-144 (152)
84 PF01484 Col_cuticle_N: Nemato 27.0 2.6E+02 0.0056 20.5 6.6 41 268-308 9-49 (53)
85 PHA03029 hypothetical protein; 24.2 3.5E+02 0.0075 22.1 6.3 36 262-297 2-37 (92)
86 PRK09108 type III secretion sy 23.5 2.9E+02 0.0063 29.7 7.8 66 262-327 176-241 (353)
87 PRK08156 type III secretion sy 23.3 2.7E+02 0.0059 30.0 7.6 63 265-327 172-234 (361)
88 TIGR01404 FlhB_rel_III type II 23.3 2.7E+02 0.0058 29.8 7.5 62 267-328 178-239 (342)
89 PRK05702 flhB flagellar biosyn 22.8 3E+02 0.0065 29.7 7.8 65 263-327 182-246 (359)
90 PRK04190 glucose-6-phosphate i 22.7 3.6E+02 0.0078 26.3 7.7 52 387-440 71-131 (191)
91 COG1480 Predicted membrane-ass 22.1 5.3E+02 0.012 30.2 9.8 41 373-413 223-264 (700)
92 TIGR03404 bicupin_oxalic bicup 21.3 2.5E+02 0.0054 30.4 6.9 52 386-439 247-299 (367)
93 TIGR00934 2a38euk potassium up 21.3 4.7E+02 0.01 31.2 9.4 23 135-157 450-472 (800)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-110 Score=932.28 Aligned_cols=529 Identities=47% Similarity=0.793 Sum_probs=470.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhhHhhhhhh
Q 007059 3 VDYTLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVI 82 (619)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~i~~~~~~ 82 (619)
+|..+...++++|+++|+||++||+++|||||++++|+ ++|.||++||+||+|+||++|++|++|+|||++|.+
T Consensus 111 ~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~- 184 (727)
T KOG0498|consen 111 IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVV- 184 (727)
T ss_pred ccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeee-
Confidence 57779999999999999999999999999999999974 799999999999999999999999999999999987
Q ss_pred ccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 007059 83 VIPGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQ 162 (619)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~ 162 (619)
+ ...........|..+.++||+|||.|++++++++.|.+|++.+++|+++++++++|||++||+||+||++|+++.
T Consensus 185 -~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~ 260 (727)
T KOG0498|consen 185 -I---GSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERP 260 (727)
T ss_pred -e---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 222223334478888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHH
Q 007059 163 HACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYC 242 (619)
Q Consensus 163 ~~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~s 242 (619)
..||+++ +|+....+.-.| .+..|+||+|.++ .+|++|
T Consensus 261 ~~~~~~~-----------------------------tw~~~l~~~~~~--~~~~~~fg~~s~~-----------~kY~~a 298 (727)
T KOG0498|consen 261 ASCPRKA-----------------------------TWLGSLGRLLSC--YNLSFTFGIYSLA-----------LKYVYA 298 (727)
T ss_pred ccCcccc-----------------------------cccccccccccc--CcccccccchhHH-----------HHHHHH
Confidence 9999754 232211001112 2223789988665 499999
Q ss_pred HHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007059 243 LWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLR 322 (619)
Q Consensus 243 lyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~ 322 (619)
||||++||||+|||+++|+|..|++|+|++|++|+++||++||||++++|+.+.|.++||.|++|+++||++|+||++||
T Consensus 299 Lyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LR 378 (727)
T KOG0498|consen 299 LYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLR 378 (727)
T ss_pred HHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCC
Q 007059 323 ERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGD 402 (619)
Q Consensus 323 ~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd 402 (619)
+||++|+||+|..++|+||+++|++||++||+||++|+|.+++++||+|++||++++++||.++++..|+|||+|++|||
T Consensus 379 qRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd 458 (727)
T KOG0498|consen 379 QRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGD 458 (727)
T ss_pred HHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHH
Q 007059 403 PVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFV 482 (619)
Q Consensus 403 ~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l 482 (619)
++++||||.+|.+++.+.++| ++.+...+++||+|||+.++|++. . |+++||+|+|+|++++|++++|+++
T Consensus 459 ~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~------~-p~t~TVralt~~el~~L~~~dL~~V 529 (727)
T KOG0498|consen 459 PVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLD------L-PQTRTVRALTYCELFRLSADDLKEV 529 (727)
T ss_pred ccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhc------C-CCCceeehhhhhhHHhccHHHHHHH
Confidence 999999999999999998887 556689999999999888888884 1 2479999999999999999999999
Q ss_pred HHHcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccccccccCccccCCCCccccccccccc
Q 007059 483 ASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKEGLYEIVEEEYPVEDSAGGAIESGAEGLAV 562 (619)
Q Consensus 483 ~~~~p~l~~~~l~~~~r~ys~~~~~~~~~~~q~a~~r~~~r~~~~~~~~~e~ry~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (619)
+++||++++++++|++++|+++||+|+++++|.+|++|.+|+....+...++.- . . ..
T Consensus 530 ~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~--------~--------~------~~ 587 (727)
T KOG0498|consen 530 LQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEES--------A--------I------RG 587 (727)
T ss_pred HHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchh--------h--------h------cc
Confidence 999999999999999999999999999999999999999998766554443111 0 0 01
Q ss_pred cccCCCCCcchhhhhhhhh--hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007059 563 EYATDAESPGTALLAPRLS--TKRLSLRVPAFNPDDSSMKMPKLFKPTDPDFSADH 616 (619)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (619)
++.+...+++++.+|++|| ++++++...+ ++.....++.++||.||||+.++
T Consensus 588 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 588 DDRGSKSLLRAGILASRFAANGRPPLHTAAS--RGSSDCALLLLQKPADPDFSDAE 641 (727)
T ss_pred ccccchhhhhcccccccccccCCCccccccc--cCccccccccCCCCCCCCccccc
Confidence 2355668899999999999 7888877432 34455668899999999998653
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3e-61 Score=565.29 Aligned_cols=408 Identities=20% Similarity=0.362 Sum_probs=343.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhhHhhhhhhccCCCC
Q 007059 9 RAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVIPGTD 88 (619)
Q Consensus 9 ~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~i~~~~~~~~~~~~ 88 (619)
..+.+++.++|++|++||+++|+|||+++++ |.+|.||++|++||+|+||++|++|++|++.+...+. ..
T Consensus 92 ~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~-----~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~---~~-- 161 (823)
T PLN03192 92 RGLEIADNVVDLFFAVDIVLTFFVAYIDPRT-----QLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT---GT-- 161 (823)
T ss_pred CCeeeHHHHHHHHHHHHHHhheeEEEEeCCC-----cEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc---CC--
Confidence 3578899999999999999999999999875 8899999999999999999999999999987654322 11
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHH
Q 007059 89 YQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQ 168 (619)
Q Consensus 89 ~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~ 168 (619)
. .....++++++++ +.|+.|+.+++.++++.... ...|...+..++..++++||+||+||+++...
T Consensus 162 -~---~~~~~~~~l~llr-l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------- 227 (823)
T PLN03192 162 -V---KLNLSYSLLGLLR-FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------- 227 (823)
T ss_pred -c---cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 0 1112233344443 55666666666666654432 22344444445555678999999999997210
Q ss_pred hhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHHHHHHH
Q 007059 169 VCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLK 248 (619)
Q Consensus 169 ~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slyw~l~ 248 (619)
...+.+|+... ..+..+.+++.+|++|+||+++
T Consensus 228 -------------------------~~~~~~Wi~~~----------------------~~~~~~~s~~~~Yi~slYwai~ 260 (823)
T PLN03192 228 -------------------------PHQGKTWIGAV----------------------IPNFRETSLWIRYISAIYWSIT 260 (823)
T ss_pred -------------------------CCCCCchHHHh----------------------hhccccCcHHHHHHHHHHHHHH
Confidence 01235786431 1123457899999999999999
Q ss_pred HhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007059 249 NLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRF 328 (619)
Q Consensus 249 tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y 328 (619)
|||||||||++|.|..|++|++++|++|+++||++||+|.+++++.+.+.++|+++++.+++||+++++|+.||+||++|
T Consensus 261 TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y 340 (823)
T PLN03192 261 TMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAY 340 (823)
T ss_pred HHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEE
Q 007059 329 LQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMI 408 (619)
Q Consensus 329 ~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~my 408 (619)
++|+|+. .+.+++++++.||++||.+|..+++.++++++|+|++++++++.+|+..++++.|+|||.|+.+||+++++|
T Consensus 341 ~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY 419 (823)
T PLN03192 341 MCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVY 419 (823)
T ss_pred HHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEE
Confidence 9999975 568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHH
Q 007059 409 FIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKR 488 (619)
Q Consensus 409 FI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~ 488 (619)
||.+|.|+++..+++++.+ +..+++|++|||.+++ .+ .|+.++++|.+.|+++.|++++|.++++++|+
T Consensus 420 ~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l----~~-----~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 420 IVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGAL----CC-----RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred EEEecEEEEEEecCCccee--eEEccCCCEecchHHh----cC-----CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 9999999999876666554 6899999999999664 12 25789999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007059 489 LHSKRLQHAFR 499 (619)
Q Consensus 489 l~~~~l~~~~r 499 (619)
....+++...+
T Consensus 489 d~~~i~~~~l~ 499 (823)
T PLN03192 489 DNVVILKNFLQ 499 (823)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-60 Score=495.12 Aligned_cols=397 Identities=23% Similarity=0.411 Sum_probs=336.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccC
Q 007059 7 LVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIP 85 (619)
Q Consensus 7 ~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~ 85 (619)
.-..|.+++++.|+.|++||++++||+|+.. |.+|.|-.+..+||.++ .|.+|++|++|++.++++..
T Consensus 27 y~~~wl~ld~~~D~vyllDi~v~~R~gyleq-------GllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~---- 95 (536)
T KOG0500|consen 27 YLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ-------GLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG---- 95 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-------CeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC----
Confidence 3456899999999999999999999999976 99999999999999998 99999999999999887654
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHH--HHHHHHHHH-HHHHHHHHHHHHHhhchh
Q 007059 86 GTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSG--SAFTLLFYM-LASHIIGATWYFFSFKRQ 162 (619)
Q Consensus 86 ~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~--~~~~lll~~-l~~H~~ac~wyll~~~~~ 162 (619)
.....| +.||+|++++..-+.++.. .|.+.. .+.+|+.+. ++.||.||+||++|...
T Consensus 96 ---------~~~~~r-------~nRllk~yRl~~F~~rTet---rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~- 155 (536)
T KOG0500|consen 96 ---------SASLER-------LNRLLKIYRLFEFFDRTET---RTTYPNAFRISKLVHYCLILFHWNACLYFLISKAI- 155 (536)
T ss_pred ---------cchHHH-------HHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhc-
Confidence 122233 3444445555444444443 223332 345666665 67999999999998421
Q ss_pred hhHHHHhhhcccCCCCCCCCCccccccCCCCCcccccccccc---ccccccccccCCCCcccchhhhhhcccchhhHHHH
Q 007059 163 HACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHS---SLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKY 239 (619)
Q Consensus 163 ~~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~---~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y 239 (619)
+.+.++|.... .....| ...++.++|
T Consensus 156 -------------------------------g~~~d~wvY~~i~d~~~~~c--------------------~~~n~~ReY 184 (536)
T KOG0500|consen 156 -------------------------------GFTTDDWVYPKINDPEFATC--------------------DAGNLTREY 184 (536)
T ss_pred -------------------------------CccccccccCCccCcccccc--------------------chhHHHHHH
Confidence 12345586432 111112 235789999
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCCh
Q 007059 240 CYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPE 319 (619)
Q Consensus 240 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~ 319 (619)
++|+||+..||||+|. ..+|.+..|.+|.|+-.++|+++||.++|++++++.++++...||+.+++.+++||++|++|.
T Consensus 185 ~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~ 263 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPK 263 (536)
T ss_pred HHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccH
Confidence 9999999999999998 456678999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEc
Q 007059 320 GLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIR 399 (619)
Q Consensus 320 ~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~ 399 (619)
.|+.||.+||.|.|.+.+..||+++++.||+.|+.+|+.+++++.|++|++|+.+++.++.+++-.++++.|.|||+|++
T Consensus 264 ~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICr 343 (536)
T KOG0500|consen 264 ALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICR 343 (536)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHH
Q 007059 400 EGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDL 479 (619)
Q Consensus 400 eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf 479 (619)
+||.+++||+|.+|.+++...||++. ...+++|++|||.+++ .+ +...++..|+++|+++..+++++|+++|+
T Consensus 344 KGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIl-ni--~g~~~gNRRtanvrSvGYSDlfvLskdDl 416 (536)
T KOG0500|consen 344 KGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISIL-NI--KGNKNGNRRTANVRSVGYSDLFVLSKDDL 416 (536)
T ss_pred cCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEE-EE--cCcccCCcceeeeeeeccceeeEeeHHHH
Confidence 99999999999999999998766543 5899999999999875 23 33346678999999999999999999999
Q ss_pred HHHHHHcHHHHHHH
Q 007059 480 KFVASQFKRLHSKR 493 (619)
Q Consensus 480 ~~l~~~~p~l~~~~ 493 (619)
.+++++||+-...+
T Consensus 417 ~~aL~eYP~a~~~L 430 (536)
T KOG0500|consen 417 WEALSEYPDARKRL 430 (536)
T ss_pred HHHHHhCCHHHHHH
Confidence 99999999755433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-56 Score=462.76 Aligned_cols=419 Identities=22% Similarity=0.403 Sum_probs=339.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhhHhhhhhhccCCCC
Q 007059 9 RAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVIPGTD 88 (619)
Q Consensus 9 ~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~i~~~~~~~~~~~~ 88 (619)
+.|.+++.++|++|++||+++|+|.|+.|. ||+|.||+.|..+|+|+||+||++|+||++.+..+-. .+
T Consensus 249 vs~lvvDSiVDVIF~vDIvLNFHTTFVGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~-----~d 317 (971)
T KOG0501|consen 249 VSWLVVDSIVDVIFFVDIVLNFHTTFVGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFER-----DD 317 (971)
T ss_pred eeEEEecchhhhhhhhhhhhhcceeeecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhc-----cc
Confidence 568889999999999999999999999997 9999999999999999999999999999997654322 11
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHH
Q 007059 89 YQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQ 168 (619)
Q Consensus 89 ~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~ 168 (619)
.........|+ +.||+|+-++.+++.+...+ ..+-.+..+..|++++||+||+||.+|..+--.
T Consensus 318 -egI~SLFSaLK-------VVRLLRLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~---- 381 (971)
T KOG0501|consen 318 -EGIGSLFSALK-------VVRLLRLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD---- 381 (971)
T ss_pred -ccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchheec----
Confidence 11112233344 55566666655666655443 112223334468899999999999998422100
Q ss_pred hhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHHHHHHH
Q 007059 169 VCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLK 248 (619)
Q Consensus 169 ~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slyw~l~ 248 (619)
...+....++|+-.- ....+++|+|-. ..-..-+...+--..|+.|+|+.++
T Consensus 382 ---------------------~~~n~i~~dsWL~kL-----a~~~~tpY~~~~--s~~~~~~gGPSr~S~YissLYfTMt 433 (971)
T KOG0501|consen 382 ---------------------EMDNTIQPDSWLWKL-----ANDIGTPYNYNL--SNKGTLVGGPSRTSAYISSLYFTMT 433 (971)
T ss_pred ---------------------ccccccccchHHHHH-----HhhcCCCceecc--CCCceeecCCcccceehhhhhhhhh
Confidence 001123446786322 222334455431 0000011245666789999999999
Q ss_pred HhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007059 249 NLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRF 328 (619)
Q Consensus 249 tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y 328 (619)
.|||+|+|++.|.+..|++|++.+||+|.++||-++|+|.+++|.++.....|++.+..+.+||+-.++|+.|.+||.+|
T Consensus 434 ~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDY 513 (971)
T KOG0501|consen 434 CMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDY 513 (971)
T ss_pred hhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEE
Q 007059 329 LQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMI 408 (619)
Q Consensus 329 ~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~my 408 (619)
.--.|..++|+|.+++|.--|+++|.||..|+.++.....|-|.-.++..+++|+..++..+..||+.|++.|+..+.+.
T Consensus 514 vVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLc 593 (971)
T KOG0501|consen 514 VVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALC 593 (971)
T ss_pred HHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHH
Q 007059 409 FIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKR 488 (619)
Q Consensus 409 FI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~ 488 (619)
||++|.+++...++- +.+++.||.||+.- |- .. ....+.++|+|+|.|.+..|.++.+.++++-|..
T Consensus 594 FvVsGSLEVIQDDEV------VAILGKGDVFGD~F--WK---~~--t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtA 660 (971)
T KOG0501|consen 594 FVVSGSLEVIQDDEV------VAILGKGDVFGDEF--WK---EN--TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTA 660 (971)
T ss_pred EEEecceEEeecCcE------EEEeecCccchhHH--hh---hh--hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHH
Confidence 999999999864321 69999999999982 32 11 2335789999999999999999999999998888
Q ss_pred HHHHHHH
Q 007059 489 LHSKRLQ 495 (619)
Q Consensus 489 l~~~~l~ 495 (619)
+++-.-+
T Consensus 661 FanSFaR 667 (971)
T KOG0501|consen 661 FANSFAR 667 (971)
T ss_pred HHHHhhh
Confidence 7754433
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-51 Score=433.66 Aligned_cols=383 Identities=23% Similarity=0.397 Sum_probs=322.6
Q ss_pred hhhHHHHHHHHHHHHHHH-HHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccCC
Q 007059 9 RAVTLLRSMVDALFFAHI-IVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIPG 86 (619)
Q Consensus 9 ~~~~~~~~~~d~~f~~Di-~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~~ 86 (619)
..|.+.++++|++|++|| +++=|..|+.. |.+|.|.+...+||+++ .|-+|++|+||++++++.+.
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrg-------G~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G----- 328 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVRG-------GDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG----- 328 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeeeC-------ceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----
Confidence 458899999999999999 67788889875 99999999999999998 99999999999999887665
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhhchhhhH
Q 007059 87 TDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYM-LASHIIGATWYFFSFKRQHAC 165 (619)
Q Consensus 87 ~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~~~~lll~~-l~~H~~ac~wyll~~~~~~~c 165 (619)
.+-++|+-|+++ +.-++- +++.+.+ +...+++-.+..-+.|| ...|+.||+||+.|-.+
T Consensus 329 --------~~p~wR~~R~lK-~~sF~e---~~~~Le~----i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq---- 388 (815)
T KOG0499|consen 329 --------FNPMWRANRMLK-YTSFFE---FNHHLES----IMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQ---- 388 (815)
T ss_pred --------cchhhhhhhHHH-HHHHHH---HHHHHHH----HhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc----
Confidence 233444333333 122222 2222222 12233333344445555 46799999999997321
Q ss_pred HHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHHHH
Q 007059 166 WIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWW 245 (619)
Q Consensus 166 w~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slyw 245 (619)
+-+.+.|+... -...|++|+||
T Consensus 389 ----------------------------glG~~rWVydg------------------------------~Gn~YiRCyyf 410 (815)
T KOG0499|consen 389 ----------------------------GLGTTRWVYDG------------------------------EGNEYIRCYYF 410 (815)
T ss_pred ----------------------------ccccceeEEcC------------------------------CCCceeeehhh
Confidence 13456786422 13679999999
Q ss_pred HHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007059 246 GLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERV 325 (619)
Q Consensus 246 ~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV 325 (619)
++.|++|+| |+-.|++..|++|..+--+.|+++||.+||.|-.++...+..+++||.+|+++-.||+..+||.+.+.||
T Consensus 411 a~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRV 489 (815)
T KOG0499|consen 411 AVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRV 489 (815)
T ss_pred HHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999 5778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcC
Q 007059 326 RRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVN 405 (619)
Q Consensus 326 ~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~ 405 (619)
|.+|+|.|..++..||.++++.||..||.|++...+-..+.+|.+|++++.+++..++-+++++.|-|||+|+++||++.
T Consensus 490 r~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGk 569 (815)
T KOG0499|consen 490 RTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGK 569 (815)
T ss_pred HHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHH
Q 007059 406 EMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQ 485 (619)
Q Consensus 406 ~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~ 485 (619)
+||+|..|.|.+....+|. ..+..+.+|++|||++|+ +.-++ ..||++|+|...|.+++|+++|+.+++..
T Consensus 570 EMYIIk~GqvQVlGGp~~~---~Vl~tL~~GsVFGEISLL-aigG~-----nRRTAnV~a~Gf~nLfvL~KkdLneil~~ 640 (815)
T KOG0499|consen 570 EMYIIKHGQVQVLGGPDGT---KVLVTLKAGSVFGEISLL-AIGGG-----NRRTANVVAHGFANLFVLDKKDLNEILVH 640 (815)
T ss_pred eeEEeecceEEEecCCCCC---EEEEEecccceeeeeeee-eecCC-----CccchhhhhcccceeeEecHhHHHHHHHh
Confidence 9999999999998655554 337999999999999775 33222 36999999999999999999999999999
Q ss_pred cHHHHH
Q 007059 486 FKRLHS 491 (619)
Q Consensus 486 ~p~l~~ 491 (619)
||+-..
T Consensus 641 YP~sq~ 646 (815)
T KOG0499|consen 641 YPDSQR 646 (815)
T ss_pred CccHHH
Confidence 996443
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.59 E-value=3.2e-14 Score=143.37 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=111.9
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
.++++.+|+|..++++.++.+....+.+.|++|+.|+++||+++.+|+|.+|.|+++...+|++. ++.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhhh
Confidence 46788999999999999999999999999999999999999999999999999999987766654 3799999999999
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
.+++ .+ .++..+++|+++|+++.+++++|.+++.++|.+...+++...+
T Consensus 84 ~~~~----~~-----~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 84 AAVV----LD-----APYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred HHHh----CC-----CCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8543 22 2578999999999999999999999999999988766655544
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=6.7e-14 Score=148.60 Aligned_cols=193 Identities=18% Similarity=0.276 Sum_probs=123.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccCC
Q 007059 8 VRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIPG 86 (619)
Q Consensus 8 ~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~~ 86 (619)
.-.+..+++++-++|-+.++++|. ++|+ ..+++|+ --+||++|++||..=+....
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~---~~P~----------------k~~F~k~pLNIIDllAIlPFYielll~~----- 294 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFL---VAPN----------------KLEFFKSPLNIIDLLAILPFYLELLLTL----- 294 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH---cCch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHH-----
Confidence 346889999999999999999994 4576 6778887 67999999999975433222
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHH----HHHHHHHH-HHHHHHHHHHHHHhhch
Q 007059 87 TDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGS----AFTLLFYM-LASHIIGATWYFFSFKR 161 (619)
Q Consensus 87 ~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~----~~~lll~~-l~~H~~ac~wyll~~~~ 161 (619)
..+.......++...+++++ +.|++|+++|.+ ..+|.-.-...+.+ +-.|++|+ +.+-+++.+-|++--+.
T Consensus 295 ~~~~~~~~l~~~~~vvrvlR-~lRI~RI~KLaR---hS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~ 370 (477)
T KOG3713|consen 295 FGGESLKELENAGLVVRVLR-VLRILRIFKLAR---HSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE 370 (477)
T ss_pred hccchHHHHhhhhhhHHHHH-HHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 11111111223323333333 445555555443 33333211111222 22233444 56778888888763110
Q ss_pred hhhHHHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHH
Q 007059 162 QHACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCY 241 (619)
Q Consensus 162 ~~~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~ 241 (619)
++ .. +..--.
T Consensus 371 ---------------------------------~~-~~------------------------------------FtSIPa 380 (477)
T KOG3713|consen 371 ---------------------------------PD-TK------------------------------------FTSIPA 380 (477)
T ss_pred ---------------------------------CC-CC------------------------------------Cccccc
Confidence 00 00 122235
Q ss_pred HHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 007059 242 CLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKL 298 (619)
Q Consensus 242 slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~ 298 (619)
|+||++.|||||||||.+|.|...++++...++.|+++.|+-|..+.+-+.......
T Consensus 381 ~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 381 GFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred hhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 899999999999999999999999999999999999999997777766665444433
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.49 E-value=1.6e-12 Score=128.44 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=98.3
Q ss_pred ccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcc
Q 007059 372 AQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMP 450 (619)
Q Consensus 372 ~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~ 450 (619)
+.+|++.++.++..++.+.|+||++|+++||+++.+|||++|.++++..+ +|++.. +.++.+|++||+..++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---c-
Confidence 46899999999999999999999999999999999999999999999765 455533 7899999999998543 1
Q ss_pred cccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 007059 451 VSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQH 496 (619)
Q Consensus 451 ~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~ 496 (619)
+ .+++..+++|.++|+++.|++++|.+++.++|.+...+++.
T Consensus 80 ~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 121 (211)
T PRK11753 80 E----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQ 121 (211)
T ss_pred C----CCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 1 12467899999999999999999999999999887655443
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.48 E-value=4e-13 Score=130.05 Aligned_cols=193 Identities=16% Similarity=0.315 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccCCCCCCC
Q 007059 13 LLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIPGTDYQA 91 (619)
Q Consensus 13 ~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~~~~~~~ 91 (619)
.++.+++++|.+|+++++.+.... .++|+++ |.++|+++++|....+.... ....+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~ 57 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSWWNWFDFISVIPSIVSVILRS-----YGSAS 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSHHHHHHHHHHHHHCCHHCCHC-----SS--H
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcChhhcccccccccccccccccc-----ccccc
Confidence 478999999999999999876442 7789998 78899999999965543222 11110
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHhhh
Q 007059 92 PDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQVCE 171 (619)
Q Consensus 92 ~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~ 171 (619)
. ...+++.++++ +.|++|+.+..+.+.+..+.+.. ........++++++..|+.||+++.+.-.....|+
T Consensus 58 ~---~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~----- 127 (200)
T PF00520_consen 58 A---QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALIR-SFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC----- 127 (200)
T ss_dssp H---CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------
T ss_pred c---cceEEEEEeec-ccccccccccccccccccccccc-ccccccccccccccccccccchhheeccccccccc-----
Confidence 0 23444455444 55666666665555555443332 22233444556678899999999998743222111
Q ss_pred cccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHHHHHHHHhh
Q 007059 172 GERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLKNLS 251 (619)
Q Consensus 172 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slyw~l~tls 251 (619)
.. .+.. .++....+.++.|..|+||.+++++
T Consensus 128 -----------~~--------------~~~~------------------------~~~~~~~~~f~~~~~s~~~~~~~~t 158 (200)
T PF00520_consen 128 -----------DP--------------TWDS------------------------ENDIYGYENFDSFGESLYWLFQTMT 158 (200)
T ss_dssp ----------------------------SS----------------------------SSTHHHHSSHHHHHHHHHHHHT
T ss_pred -----------cc--------------cccc------------------------ccccccccccccccccccccccccc
Confidence 00 0000 0111234557889999999999999
Q ss_pred ccCCCccccC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007059 252 SYGQNLTTST-----YILEILFS-MVICILGLILFSYLLGKM 287 (619)
Q Consensus 252 tvG~gd~~~~-----~~~E~if~-i~i~i~G~ilfa~lIg~~ 287 (619)
+.|+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 159 GEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999887 78898888 777777789999999986
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=7.2e-12 Score=126.14 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=98.9
Q ss_pred hhhchhcccchHHHHHHHHHHceE-EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecch
Q 007059 365 VRRVPFFAQMDQQLLDAICERLYS-SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 365 l~~v~~F~~ls~~~l~~L~~~l~~-~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~ 442 (619)
+++.+.|..+++++++.|....+. +.|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 444455556999999999998864 679999999999999999999999999999875 455544 6888999999986
Q ss_pred hHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 443 LLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 443 ~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
.+ ..+ ++..+++|+++|+++.|++++|.+++.++|.+...+++.+
T Consensus 93 ~~----~~~------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~ 137 (235)
T PRK11161 93 AI----GSG------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLM 137 (235)
T ss_pred cc----cCC------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHH
Confidence 32 111 2345899999999999999999999999998877665444
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.39 E-value=4.4e-12 Score=110.88 Aligned_cols=111 Identities=24% Similarity=0.403 Sum_probs=96.7
Q ss_pred hcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCC-cceeeEeeecCCCCeecchhHhhhh
Q 007059 370 FFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGG-RAGFYNSITLKSGDFCGEELLTWAL 448 (619)
Q Consensus 370 ~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g-~~~~~~~~~l~~G~~fGe~~l~~al 448 (619)
+|..++++.+..++..++.+.+.+|++|+.+|++.+.+|||.+|.++++..+.+ ++.. +..+.+|++||...++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 477899999999999999999999999999999999999999999999876543 3333 6889999999998543
Q ss_pred cccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 449 MPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 449 ~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
.+ .++..+++|.++|+++.|+.++|.+++.++|.+..
T Consensus 76 -~~-----~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 -GN-----GPRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred -cC-----CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 12 24788999999999999999999999999997664
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.36 E-value=8.7e-12 Score=125.01 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=92.1
Q ss_pred HHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccC
Q 007059 376 QQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTL 454 (619)
Q Consensus 376 ~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~ 454 (619)
+-+...|....+.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+..++ .+
T Consensus 21 ~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~----~~--- 91 (226)
T PRK10402 21 DCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI----DK--- 91 (226)
T ss_pred hcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh----cC---
Confidence 3344467778889999999999999999999999999999999765 455543 6899999999998542 22
Q ss_pred CCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 455 NLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 455 ~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
.+++.+++|+++|+++.+++++|..++.++|.+....++..
T Consensus 92 --~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 92 --DHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred --CCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 35789999999999999999999999999998876554443
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.9e-11 Score=106.18 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=97.3
Q ss_pred hcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhc
Q 007059 370 FFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALM 449 (619)
Q Consensus 370 ~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~ 449 (619)
+|.+++++.++.++..++.+.+++|++|+++|++++++|||.+|.++++..+.+... ..+..+.+|++||+..++ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~-~~~~~~~~g~~~g~~~~~---~ 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE-QILGILGPGDFFGELALL---T 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce-EEEEeecCCceechhhhc---c
Confidence 477899999999999999999999999999999999999999999999987533322 237899999999999543 0
Q ss_pred ccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHH
Q 007059 450 PVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKR 493 (619)
Q Consensus 450 ~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~ 493 (619)
. ...+...+++|.++|+++.++.+++.....++|.+..+.
T Consensus 77 ~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 77 N----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred C----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 1 112477899999999999999999999999999765443
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=1.3e-11 Score=104.21 Aligned_cols=90 Identities=27% Similarity=0.317 Sum_probs=78.9
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcce
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTE 468 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~ 468 (619)
+.|+||++|+++|++++++|||++|.++++..+.+.... .+..+.+|++||+..++.. .++..+++|+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~---------~~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLTG---------KPSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHHT---------SBBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecCC---------CccEEEEEEccC
Confidence 679999999999999999999999999999887655443 3789999999999966421 148899999999
Q ss_pred EEEEEeCHHHHHHHHHHcHH
Q 007059 469 VEAFALRAEDLKFVASQFKR 488 (619)
Q Consensus 469 ~ell~L~~edf~~l~~~~p~ 488 (619)
|+++.|++++|.++++++|+
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999994
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.29 E-value=1.3e-10 Score=113.96 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=101.0
Q ss_pred hchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceeeEeeecCCCCeecchhHh
Q 007059 367 RVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG-GRAGFYNSITLKSGDFCGEELLT 445 (619)
Q Consensus 367 ~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~-g~~~~~~~~~l~~G~~fGe~~l~ 445 (619)
..+.|..++++....+....+.+.+++|+.|+++||+++.+|+|.+|.++++.... |++.. +.++++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 44666667777777777889999999999999999999999999999999998764 45443 6899999999999653
Q ss_pred hhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 446 WALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 446 ~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
.+. ++..+++|+++|+++.+++++|.+++.+.|.+...+++...+
T Consensus 82 ----~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 82 ----GGD-----PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred ----cCC-----CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 111 588999999999999999999999987788877766555544
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.24 E-value=1.6e-10 Score=116.24 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCc
Q 007059 380 DAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPL 458 (619)
Q Consensus 380 ~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~ 458 (619)
.+++...+.+.|+||++|+++||+++++|||++|.|+++..+ +|++.+ +.++.+|++||+.. . .+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~-------~-----~~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES-------G-----ST 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC-------C-----Cc
Confidence 356667788999999999999999999999999999999765 455433 68899999999641 1 24
Q ss_pred cccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 459 STRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 459 s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+.++++|+++|+++.|++++|.+++.++|.+...+++.+.+
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 67899999999999999999999999999988877665544
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.16 E-value=6.6e-11 Score=125.69 Aligned_cols=126 Identities=25% Similarity=0.435 Sum_probs=109.9
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCe
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDF 438 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~ 438 (619)
.-++++|+++|+|++++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.+....+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34688999999999999999999999999999999999999999999999999999999987766444444799999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcce-EEEEEeCHHHHHHHHHHcHHHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTE-VEAFALRAEDLKFVASQFKRLHSKR 493 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~-~ell~L~~edf~~l~~~~p~l~~~~ 493 (619)
|||-+|+ .. ..|++++.|... ++++.|+++.|..++....++..+.
T Consensus 348 FGE~al~----~e-----dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~ 394 (732)
T KOG0614|consen 348 FGERALL----GE-----DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKD 394 (732)
T ss_pred hhHHHhh----cc-----CccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhh
Confidence 9999664 22 358899999988 9999999999999998877666433
No 18
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.16 E-value=4e-12 Score=128.98 Aligned_cols=51 Identities=10% Similarity=0.287 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007059 241 YCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYV 291 (619)
Q Consensus 241 ~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l 291 (619)
.++||++.|||||||||..|.+.+.+++..+++|.|++-.|+-+..+.+-+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 489999999999999999999999999999999999999888555444433
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.15 E-value=8.9e-10 Score=107.16 Aligned_cols=127 Identities=19% Similarity=0.119 Sum_probs=92.6
Q ss_pred CcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEE
Q 007059 394 DTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAF 472 (619)
Q Consensus 394 ge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell 472 (619)
|+.|+++||+++.+|+|.+|.|+++..+ +|++.+ +.++.+|++||+..++ .+. ..++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~----~~~---~~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI----TGH---RSDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec----cCC---CCccceEEEEecceEEE
Confidence 7899999999999999999999999765 455543 7999999999998543 221 11245789999999999
Q ss_pred EeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 007059 473 ALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKE 533 (619)
Q Consensus 473 ~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~~~~~~~~~~~q~a~~r~~~r~~~~~~~~~e 533 (619)
.+++++|.+++.++|.+...+++...+ ..+.........+.....+|....++..++
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~ 128 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSRLVSFLLILCR 128 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999998877665443 333333333333444455566655554444
No 20
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.11 E-value=2e-09 Score=105.64 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=92.0
Q ss_pred HceEEEeCCCcEEEcCCC--CcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCcccc
Q 007059 385 RLYSSLNTRDTYLIREGD--PVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTR 461 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~eGd--~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~ 461 (619)
.++.+.|+||++|+++|| +++.+|+|++|.|+++..+ +|++.+ +.++.+|++||+..+ ..+ +++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~----~~~------~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL----AGA------ERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh----cCC------CCCc
Confidence 467889999999999999 7799999999999999865 455544 799999999998743 211 3678
Q ss_pred EEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 007059 462 TVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKE 533 (619)
Q Consensus 462 tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~~~~~~~~~~~q~a~~r~~~r~~~~~~~~~e 533 (619)
+++|+++|+++.|++++| .|.+...++++..+...+.. +.+...+.....+|....++.-++
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~----~~~~~l~~~~~~~Rla~~Ll~l~~ 134 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAY----ESIYRLVGQRLKNRIAAALLELSD 134 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHH----HHHHHHHhCchHHHHHHHHHHHHH
Confidence 999999999999999987 46666666655554333322 223333444556666665555444
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.10 E-value=6.3e-10 Score=121.60 Aligned_cols=113 Identities=22% Similarity=0.394 Sum_probs=98.2
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
.++++++++|++++++.++.|+..++.+.|++|++|+++||.++.+|+|++|.|+++..+++.+ .++..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge--~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES--RPEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc--EEEEEeCCCCEeeh
Confidence 4568899999999999999999999999999999999999999999999999999998765433 23788999999996
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcH
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFK 487 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p 487 (619)
. + . + .++..+++|.++|+++.|+++.|..+....+
T Consensus 85 ~-l----~-~-----~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----S-G-----SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----C-C-----CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 2 1 1 2478999999999999999999998876655
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=116.75 Aligned_cols=88 Identities=22% Similarity=0.409 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhC
Q 007059 236 IRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHR 315 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~ 315 (619)
+..|-.++|||+.|+||+||||++|.+...++.+.+..++|+-+||+--|.+++=+.-.- +|+.|+ +++-+.+
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHhhc
Confidence 577889999999999999999999999999999999999999999998887776553322 223333 3778888
Q ss_pred CCChhHHHHHHHHHH
Q 007059 316 QLPEGLRERVRRFLQ 330 (619)
Q Consensus 316 ~lp~~L~~rV~~y~~ 330 (619)
+.-..|-+-..+||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888999999988874
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.05 E-value=3.7e-10 Score=120.08 Aligned_cols=117 Identities=19% Similarity=0.361 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCC
Q 007059 356 IQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKS 435 (619)
Q Consensus 356 I~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~ 435 (619)
=..++..+.|++..|+++++.+.+..++..|-++.|.+|++|++|||+++++|.+..|.+++.. +|+- +..+++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCC
Confidence 3455668888888999999999999999999999999999999999999999999999999986 3432 799999
Q ss_pred CCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcH
Q 007059 436 GDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFK 487 (619)
Q Consensus 436 G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p 487 (619)
|..|||.++++.+ +|+++|+|+++|.+|+|+++-|+.++...-
T Consensus 221 gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 221 GTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred chhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999876543 599999999999999999999999987665
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.01 E-value=3.3e-09 Score=114.56 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=102.6
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
.+++.++|.|+.++++.+++|...++...|.|||.|+..|.+.+++|+|.+|.|+++..+|. . +..+.+|+.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 56889999999999999999999999999999999999999999999999999999875443 1 699999999999
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHH
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSK 492 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~ 492 (619)
.+++ +.. +......|.+++-+|.|+++.|.+++.++|.++..
T Consensus 81 ~~l~----~~~-----~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~f 122 (610)
T COG2905 81 SSLF----TEL-----NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADF 122 (610)
T ss_pred hhhc----ccC-----CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHH
Confidence 9553 332 23457888889999999999999999999988753
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=8.5e-10 Score=112.84 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=100.1
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
.+.+++.-+|++++++.+..+...+..+.++.|+.|+++||.++.+|+|.+|.++++.. |+ . +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~---~-v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT---Y-VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce---E-EeeeCCCCchhh
Confidence 56777888999999999999999999999999999999999999999999999999985 22 1 689999999999
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHH
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSK 492 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~ 492 (619)
.+|.+ + +|+.+|+.|.+++.+|.|++..|..++-..-.-..+
T Consensus 195 lALmy----n-----~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrk 236 (368)
T KOG1113|consen 195 LALMY----N-----PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRK 236 (368)
T ss_pred hHhhh----C-----CCcccceeeccccceEEEeeceeEEEeeccchhhhh
Confidence 97642 2 479999999999999999999998887555433333
No 26
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.3e-10 Score=117.07 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=115.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccC
Q 007059 7 LVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIP 85 (619)
Q Consensus 7 ~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~ 85 (619)
.+.+++.+++.+-++|....+++... +|+ ..|++|+ .-+||+++++|+..=+ + ++
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~a---APs----------------R~rF~RSvMSiIDVvAIlPYYigL---v--~t 280 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFA---APS----------------RYRFLRSVMSIIDVVAILPYYIGL---V--MT 280 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHc---Cch----------------HHHHHHHHHHHHHHhhhhhhheEE---E--ec
Confidence 34567778888888899999988844 466 6788998 7899999999985321 2 23
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH--HHhHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 007059 86 GTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERI--MKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQH 163 (619)
Q Consensus 86 ~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i--~k~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~ 163 (619)
. +.++....-.|| +.|++||++..+.- .+..|+-.++-....-+.|+...+++-++|.+.|+.--
T Consensus 281 ~--N~DVSGaFVTLR-------VFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK---- 347 (632)
T KOG4390|consen 281 D--NEDVSGAFVTLR-------VFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK---- 347 (632)
T ss_pred C--CccccceeEEEE-------eeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc----
Confidence 2 222222333344 34445555444321 13344433332222233344444566677777776520
Q ss_pred hHHHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHH
Q 007059 164 ACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCL 243 (619)
Q Consensus 164 ~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~sl 243 (619)
+ .+.+-+...-.++
T Consensus 348 -----------------g-------------------------------------------------~~at~FTsIPaaF 361 (632)
T KOG4390|consen 348 -----------------G-------------------------------------------------SSATKFTSIPAAF 361 (632)
T ss_pred -----------------c-------------------------------------------------ccccccccCcHhH
Confidence 0 0001122233589
Q ss_pred HHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 007059 244 WWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSY----LLGKMQNYV 291 (619)
Q Consensus 244 yw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~----lIg~~~~~l 291 (619)
|+.+.||||+||||.+|.+...++|..++.+.|+++.|+ ++.|+..+.
T Consensus 362 WYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 362 WYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred hhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 999999999999999999999999999999999999887 455555544
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.69 E-value=5.9e-08 Score=80.70 Aligned_cols=55 Identities=13% Similarity=0.388 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQ 292 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~ 292 (619)
.|..++||++.++||+||||+.|.+..+++++++.+++|+.++++.++.+.+.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999999999999998875
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=6.3e-08 Score=99.33 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCC
Q 007059 356 IQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKS 435 (619)
Q Consensus 356 I~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~ 435 (619)
.++.++.++|+++|++..++......++..+.++.|.+|+.|+.+|++++++|+|.+|.|.+....+| +.+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eech
Confidence 45678899999999999999999999999999999999999999999999999999999998865544 224 9999
Q ss_pred CCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHH
Q 007059 436 GDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKR 488 (619)
Q Consensus 436 G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~ 488 (619)
|++|||.+++.. .|+.+++.|.++..+..+++..|+.|+.--.+
T Consensus 308 ~dyfge~al~~~---------~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 308 GDYFGELALLKN---------LPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhhcchHHHHhh---------chhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 999999966422 25889999999999999999999999865543
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.22 E-value=1.9e-06 Score=92.54 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhC
Q 007059 236 IRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHR 315 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~ 315 (619)
.-.|..|.|+-+.||+||||||+..++...++|.++..+.|+.+||--+..+..++.+-..---||....- =+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeE
Confidence 35688999999999999999999999999999999999999999999888888887665433323211100 0000
Q ss_pred CC-ChhHHHHHHHHHHHHHHhhc-CCC-HHHHHhhCChhHHHHHHHHHHHHHhhhchhccc--chHHHHH
Q 007059 316 QL-PEGLRERVRRFLQYKWLATR-GVD-EESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQ--MDQQLLD 380 (619)
Q Consensus 316 ~l-p~~L~~rV~~y~~y~w~~~~-~~~-e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~--ls~~~l~ 380 (619)
-+ ..-..+.|..|++---.+.+ .+| |--+|...||+|.-| .+++.-..++.+|++ |++-.+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 00 11223445555544433333 345 334578889988654 345566678888885 5555443
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.96 E-value=0.0002 Score=77.59 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYV 291 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l 291 (619)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999998877644
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.96 E-value=1.2e-05 Score=90.84 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=96.3
Q ss_pred HHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCC
Q 007059 377 QLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNL 456 (619)
Q Consensus 377 ~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~ 456 (619)
.++..+-..+....+.+|+.++++||..+++|+|+.|.+++....+|.+..+ +..++.||.+|+.+.+ . +
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i-~~EygrGd~iG~~E~l---t-~----- 568 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI-VGEYGRGDLIGEVEML---T-K----- 568 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh-hhhccCcceeehhHHh---h-c-----
Confidence 3456666778889999999999999999999999999999987654433322 6889999999999653 2 1
Q ss_pred CccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 007059 457 PLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYY 501 (619)
Q Consensus 457 ~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~y 501 (619)
.++..|+.|+-++|+.+|+.--|..+..+||.+-.+..+..++.+
T Consensus 569 ~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 569 QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred CCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 258889999999999999999999999999999888887777766
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.82 E-value=0.0013 Score=70.29 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhC
Q 007059 236 IRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHR 315 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~ 315 (619)
...|+.++|....|.-++||||++|.|...+..+++..++|..+.|.+++.++.-+ |...--+.+.+||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999887655 3334445678888888
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 007059 316 QLPEGLRERVRRFLQYKWL 334 (619)
Q Consensus 316 ~lp~~L~~rV~~y~~y~w~ 334 (619)
+|-+++++-..+=++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777776
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.69 E-value=0.00022 Score=75.42 Aligned_cols=61 Identities=11% Similarity=0.291 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhccCCCc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 237 RKYCYCLWWGLKNLSSYGQNL--TTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 237 ~~Y~~slyw~l~tlstvG~gd--~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
..+..+|++++.|++|+|||. ++|....-.++.++=+++|+++.|+++|.+-+=++.-..|
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R 145 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKR 145 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCG
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 457789999999999999998 6777777788888999999999999999998877765443
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.30 E-value=0.0015 Score=74.46 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=88.1
Q ss_pred HHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccc
Q 007059 381 AICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLST 460 (619)
Q Consensus 381 ~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~ 460 (619)
+++.+++...+..|++|++.|++.+.+|.+.+|.+.+...++..+.- -+....+|+-|....-+.+..+.-+. ..++
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~-llk~V~~G~~~tSllSiLd~l~~~ps--~~~~ 186 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY-LLKTVPPGGSFTSLLSILDSLPGFPS--LSRT 186 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee-eEeeccCCCchHhHHHHHHhccCCCc--ccce
Confidence 45578888999999999999999999999999999998776543332 27889999877766422233333322 3567
Q ss_pred cEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 007059 461 RTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQH 496 (619)
Q Consensus 461 ~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~ 496 (619)
..++|.++|.+..++...|..+...||+-.....|.
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQv 222 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQV 222 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHH
Confidence 899999999999999999999999999755544444
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0011 Score=71.95 Aligned_cols=59 Identities=14% Similarity=0.345 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
+..++|++.+++||+|||++.|.+...++|+|+..++|+-++..++++++..+...-.+
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999998755444
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.84 E-value=0.026 Score=55.39 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=73.3
Q ss_pred HHHHHHHHHceEEEeCCCcEE-EcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCC
Q 007059 377 QLLDAICERLYSSLNTRDTYL-IREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLN 455 (619)
Q Consensus 377 ~~l~~L~~~l~~~~~~kge~I-i~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~ 455 (619)
...+.+...-++..+++|..+ ..+......++++.+|.|.+.. .++ ..+....+-..||-... +.+.
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~----ll~~t~~aP~IlGl~~~---~~~~---- 80 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN----VLIGITQAPYIMGLADG---LMKN---- 80 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC----eEEEeccCCeEeecccc---cCCC----
Confidence 345677777888999999997 4444444679999999999953 332 22677888888987531 2222
Q ss_pred CCccccEEEEcceEEEEEeCHHHHHHHHHHcHH
Q 007059 456 LPLSTRTVKSLTEVEAFALRAEDLKFVASQFKR 488 (619)
Q Consensus 456 ~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~ 488 (619)
...+.++|.++|+++.++.+++.++++++.-
T Consensus 81 --~~~~~l~ae~~c~~~~i~~~~~~~iie~~~L 111 (207)
T PRK11832 81 --DIPYKLISEGNCTGYHLPAKQTITLIEQNQL 111 (207)
T ss_pred --CceEEEEEcCccEEEEeeHHHHHHHHHHhch
Confidence 2357899999999999999999999998873
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.77 E-value=0.062 Score=49.72 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHH-ceEEEeCCCcEEEcCC-CCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcc
Q 007059 373 QMDQQLLDAICER-LYSSLNTRDTYLIREG-DPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMP 450 (619)
Q Consensus 373 ~ls~~~l~~L~~~-l~~~~~~kge~Ii~eG-d~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~ 450 (619)
+.+......|+.. .+.....+|+.-.-|| .+.+.+-++++|++++.. +|+ .+..+.|.+|....+.. ++-+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~----fLH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGR----FLHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCE----eeEeecccccccChhhh-cccc
Confidence 4577777888877 6678899999998888 567899999999999986 233 17888999988877642 3322
Q ss_pred cccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 451 VSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 451 ~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
. ....-..|+.|.++|..+..+++.+..++...|-+..
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~ 124 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA 124 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence 2 2234568999999999999999999999999996553
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.02 E-value=0.018 Score=63.93 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=88.2
Q ss_pred HHHHHhhhchhcccchHHHHHHHHHHceEE-EeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCe
Q 007059 360 LCLAFVRRVPFFAQMDQQLLDAICERLYSS-LNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDF 438 (619)
Q Consensus 360 l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~-~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~ 438 (619)
..++++.+.|-|.+|+-...++||..|... .-..|.+|+..|+.-+..+.|+.|+|++...+|.+ ..+.-|+-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 347889999999999999999999988754 45679999999999999999999999999988765 46778999
Q ss_pred ecchhHhhhhcccccCCCCccccE-EEEcceEEEEEeCHHHHHHHHHHcH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRT-VKSLTEVEAFALRAEDLKFVASQFK 487 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~t-v~Alt~~ell~L~~edf~~l~~~~p 487 (619)
||...- .+ +. ...-- -.-+.+|+..+|...|+-.++.+..
T Consensus 352 FG~~PT---~d-kq-----ym~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PD-KQ-----YMIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cc-hh-----hhhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 997721 11 11 01111 1246899999999999999987643
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.68 E-value=0.17 Score=52.18 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhccCCCccccCch-------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYI-------LEI-LFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~-------~E~-if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
.|+.|+|+.+.|+||+|+||.++.-. .+. .|+.+.+++|+.+++-+++.+.--+..+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37889999999999999999776533 233 5667777789888887777665544433
No 40
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.27 Score=52.00 Aligned_cols=60 Identities=12% Similarity=0.337 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhccCCCccc--cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTT--STYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~--~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
.+..||-|++-|=+|+|||--. ..-+.-++.-++=+|+|+++-|+++|.|-.-+..-..|
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 3455777889999999999644 34455566667778999999999999988776655444
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=91.60 E-value=0.025 Score=58.15 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHH
Q 007059 236 IRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYL 283 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~l 283 (619)
--++.-||||+.+.+||+|||-.+|.|.+.++|+|+..++|+-+--+.
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvm 125 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVM 125 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHH
Confidence 345666999999999999999999999999999999999887654443
No 42
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.23 Score=54.19 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHH
Q 007059 240 CYCLWWGLKNLSSYGQNLTTSTYILEILFS 269 (619)
Q Consensus 240 ~~slyw~l~tlstvG~gd~~~~~~~E~if~ 269 (619)
+.|+|+.+.|.+||||||..|....-.+..
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~ 248 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCV 248 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHH
Confidence 347888999999999999999865544433
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=90.04 E-value=30 Score=42.87 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 264 LEILFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 264 ~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
+-..|..+++++..++.-++|+.|..-++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666543
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.87 E-value=0.53 Score=52.79 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
...|.....|.++-..-+.++|...+...++-..++++.||++...|++++|.|-+.. ..+.|-..||-
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------QIYMPYGCFGK 104 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------ceecCcccccc
Confidence 3466777888999889999999999999999999999999999999999999986642 23444455665
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCH
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRA 476 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~ 476 (619)
. . ...++.++-.++++|.++++.
T Consensus 105 r---------~---g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 105 R---------T---GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred c---------c---ccccccceeeecccceeeeec
Confidence 5 1 123788888899999998854
No 45
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=88.69 E-value=0.088 Score=57.14 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhccCCCccccCchhhH--------HHHHHHHHHHHHHHHHHHHH
Q 007059 237 RKYCYCLWWGLKNLSSYGQNLTTSTYILEI--------LFSMVICILGLILFSYLLGK 286 (619)
Q Consensus 237 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~--------if~i~i~i~G~ilfa~lIg~ 286 (619)
--|+.|+|+++.++||+|+||++|.+.... .+..++.++|...++.+.-.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 298 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLLG 298 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhhc
Confidence 567889999999999999999999987755 67888888888888887733
No 46
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.96 E-value=55 Score=38.32 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=53.4
Q ss_pred hccCCCccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHhCCCChhHHH
Q 007059 251 SSYGQNLTTSTY------ILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKL-EDWRIRRRDTEEWMRHRQLPEGLRE 323 (619)
Q Consensus 251 stvG~gd~~~~~------~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~-~e~r~k~~~~~~~m~~~~lp~~L~~ 323 (619)
.|+|+||..... ..-++|.+++.++-+.++=.+|+.|+.-........ ++|+.+.-.+ -.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 477888755442 345677777778888888888998888776665555 6776554443 45678889999888
Q ss_pred HHHH
Q 007059 324 RVRR 327 (619)
Q Consensus 324 rV~~ 327 (619)
+-+.
T Consensus 680 ~~~~ 683 (782)
T KOG3676|consen 680 RFRL 683 (782)
T ss_pred HHhh
Confidence 7443
No 47
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.03 E-value=12 Score=43.82 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch------HHHHHHH-------HHHHHHHHHHHh--------------CC
Q 007059 264 LEILFSMVICILGLILFSYLLGKMQNYVQSTT------AKLEDWR-------IRRRDTEEWMRH--------------RQ 316 (619)
Q Consensus 264 ~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~------~~~~e~r-------~k~~~~~~~m~~--------------~~ 316 (619)
.-++++++-+++...+++-+-..+|..-.... ...++|- .-++.+.+|+.+ ++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~ 403 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQS 403 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHh
Confidence 34566666667777777776666665544322 2222221 112233333332 57
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHH
Q 007059 317 LPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHL 360 (619)
Q Consensus 317 lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l 360 (619)
||++||..|++|+-+.-.+ .-.+++..++.+-..|...+
T Consensus 404 LP~~LR~dI~~hL~~~lv~-----~vpLF~~md~~~L~al~~rl 442 (727)
T KOG0498|consen 404 LPKDLRRDIKRHLCLDLVR-----KVPLFAGMDDGLLDALCSRL 442 (727)
T ss_pred CCHHHHHHHHHHHhHHHHh-----hCchhhcCCHHHHHHHHHHh
Confidence 9999999999998766442 23455555555544444443
No 48
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.28 E-value=46 Score=39.84 Aligned_cols=36 Identities=8% Similarity=0.238 Sum_probs=20.8
Q ss_pred cccCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007059 258 TTSTYILEILF-SMVICILGLILFSYLLGKMQNYVQS 293 (619)
Q Consensus 258 ~~~~~~~E~if-~i~i~i~G~ilfa~lIg~~~~~l~~ 293 (619)
+...|++-.++ .++..|+..++...++|.+++-+..
T Consensus 1354 I~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1354 ILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455665554 3445555555566677777776643
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.82 E-value=27 Score=44.61 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCc
Q 007059 8 VRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLP 72 (619)
Q Consensus 8 ~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lP 72 (619)
...+...+.+.-.+|.+.|+++...- |- .-|++. |.++|++-+.-
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~ia~-----------Gf---------~~y~rn~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWIAY-----------GF---------FFYFRNAWNWLDFVVVIV 916 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-----------HH---------HHHHhhHHhhhhHHHhhh
Confidence 45566778888888888888876421 21 119998 99999976553
No 50
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=76.80 E-value=1.7e+02 Score=34.74 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHH
Q 007059 262 YILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK-LEDWRIRRR 306 (619)
Q Consensus 262 ~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~-~~e~r~k~~ 306 (619)
..+-.+|.++..+.-+++.=++|+.|....+..... .++|+-.+-
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~ 631 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRA 631 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 356677777777777888888888888887766544 456654443
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.04 E-value=5.5 Score=31.32 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEeCCCcEEEcCCCCcC-eEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 389 SLNTRDTYLIREGDPVN-EMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~-~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..++||+..-..-.+.. ++++|++|.+.+. .++. ...+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~------~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGE------RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTE------EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccE------EeEccCCEEEE
Confidence 46788887766665666 9999999999988 3433 36788998763
No 52
>COG4709 Predicted membrane protein [Function unknown]
Probab=69.99 E-value=21 Score=34.43 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHhh--cCCCHHHHHhhC--ChhHHHHHHHHHHHHHhhhchhcccchH
Q 007059 305 RRDTEEWMRHRQLPEGLRERVRRFLQYKWLAT--RGVDEESILQSL--PLDLRRTIQRHLCLAFVRRVPFFAQMDQ 376 (619)
Q Consensus 305 ~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~--~~~~e~~ll~~L--P~~Lr~dI~~~l~~~ll~~v~~F~~ls~ 376 (619)
++++++|+ +++|++.++.+..+|+-.+.+. .|.+|+++.++| |+++-+|+....-.+-...-|-+.+...
T Consensus 7 L~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 7 LNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 45566766 4699999999999988777754 578899999987 6677777777665555544455554443
No 53
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=68.29 E-value=8.1 Score=34.00 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=33.7
Q ss_pred CCCChhHHHHHHHHHHHHHHh----------hcCCCHHHHHhhCChhHHHHHHHH
Q 007059 315 RQLPEGLRERVRRFLQYKWLA----------TRGVDEESILQSLPLDLRRTIQRH 359 (619)
Q Consensus 315 ~~lp~~L~~rV~~y~~y~w~~----------~~~~~e~~ll~~LP~~Lr~dI~~~ 359 (619)
..||+++|..|...+.-.-.. ....|...+|..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 348999999999987544221 123456789999999999998754
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=67.71 E-value=18 Score=34.12 Aligned_cols=58 Identities=12% Similarity=0.278 Sum_probs=40.7
Q ss_pred cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHH
Q 007059 404 VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAED 478 (619)
Q Consensus 404 ~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~ed 478 (619)
.++++++++|.+.+-..++|+.. ...+++||+|=- |.. -..+-++.++|.++.+.+..
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flv--------P~g------vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLL--------PPH------VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEe--------CCC------CCcccccCCCcEEEEEEeCC
Confidence 78999999999999877766422 478999998832 222 12344556778888877653
No 55
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.67 E-value=36 Score=30.74 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=43.3
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEc
Q 007059 387 YSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSL 466 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Al 466 (619)
....++||..+-..-....++++|++|.+++...++|+ ...+.+||.+--. ++ ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~-------~~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALD-------KH-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEEC-------CC-------CcEEEEcC
Confidence 34577888755332222247999999999987333344 3789999987533 11 22345555
Q ss_pred ceEEEEEe
Q 007059 467 TEVEAFAL 474 (619)
Q Consensus 467 t~~ell~L 474 (619)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88887765
No 56
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=63.40 E-value=35 Score=26.40 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH---HHHHHHHHHHHHHHHH
Q 007059 263 ILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK---LEDWRIRRRDTEEWMR 313 (619)
Q Consensus 263 ~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~---~~e~r~k~~~~~~~m~ 313 (619)
.+..++.+.+.++-+++++..-+.+-.++++.+.. ..++.+|++.+-+.+.
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 34455655443333333333333455555543332 2368889988887764
No 57
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=62.44 E-value=50 Score=31.66 Aligned_cols=54 Identities=26% Similarity=0.491 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHh--hcCCCHHHHHhhC--ChhHHHHHHHHH
Q 007059 305 RRDTEEWMRHRQLPEGLRERVRRFLQYKWLA--TRGVDEESILQSL--PLDLRRTIQRHL 360 (619)
Q Consensus 305 ~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~--~~~~~e~~ll~~L--P~~Lr~dI~~~l 360 (619)
+++++++++ ++|++-++.+.+||+-...+ ..|.+|++++++| |+++-+++..+.
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 566777786 59999999999999877765 4578899999997 667777776554
No 58
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=61.54 E-value=43 Score=32.81 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=40.3
Q ss_pred hCChhHHHHHHHHHHHHHhhhchhcc-cchHHHHHHHHHHceEEE--eCCCcEEEcCCCCcC
Q 007059 347 SLPLDLRRTIQRHLCLAFVRRVPFFA-QMDQQLLDAICERLYSSL--NTRDTYLIREGDPVN 405 (619)
Q Consensus 347 ~LP~~Lr~dI~~~l~~~ll~~v~~F~-~ls~~~l~~L~~~l~~~~--~~kge~Ii~eGd~~~ 405 (619)
.+|+. .+.+...+...++.---.|. ..++...+.......+.. +.+|+.|+++|++.+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 45555 34444445455443333343 467788888899999998 999999999999865
No 59
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=57.56 E-value=22 Score=34.17 Aligned_cols=62 Identities=11% Similarity=0.289 Sum_probs=43.3
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHH
Q 007059 402 DPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLK 480 (619)
Q Consensus 402 d~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~ 480 (619)
++.++++++++|.+.+...++|+.. ...+.+|++|=- |... ..+-++-++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~gv------pHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PPHV------PHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CCCC------CcCCccCCCeEEEEEEeCCCC
Confidence 5678999999999999887766422 478999998832 2221 123355688999988776443
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=50.79 E-value=15 Score=33.38 Aligned_cols=75 Identities=8% Similarity=0.129 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Q 007059 235 FIRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRH 314 (619)
Q Consensus 235 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~ 314 (619)
.......++|+.+.++.. +-++..|.....+++.+++.++++++.+.-.|++.+++..... ....+.+++..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHHC
Confidence 345666788887777665 3356888999999999999999999999999999998865432 2234455555555
Q ss_pred C
Q 007059 315 R 315 (619)
Q Consensus 315 ~ 315 (619)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 61
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=49.13 E-value=1.3e+02 Score=32.61 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 007059 235 FIRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKL 298 (619)
Q Consensus 235 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~ 298 (619)
..--|+.++-+++..+.+++-+.....-..-..+++++.++++++|.+.|..+...+|-.+.-.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~ 160 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIA 160 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3455666777777777777766542222233888999999999999999999998887555443
No 62
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.91 E-value=4.6e+02 Score=34.03 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHhhhh-hhHhHhHhhCchhhHhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHhHHHHHhhH
Q 007059 56 RRYLKS-DFIVDLVATLPLPQITSYLVIVIPGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWS 134 (619)
Q Consensus 56 ~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~~~~~~~~~~~ 134 (619)
+.|.++ |.++|.+-+. +..+-.. ........+||.+++++ +.|+.+..+..+.+.+..+.. .
T Consensus 500 ~~yF~~~~n~fD~~iv~-l~~~~~~----------~~~~~g~svLr~frllR-Ifkl~k~wp~l~~lv~~i~ns-----~ 562 (1592)
T KOG2301|consen 500 RNYFRRGWNIFDLIIVL-LSLLELL----------LKNVYGLSVLRSFRLLR-IFKLIKSWPTLNDLVKSIFNS-----G 562 (1592)
T ss_pred HHHHhhhcchheEEEEe-hhhHHhc----------ccchHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhccc-----H
Confidence 356655 7788877666 3322111 11123445666665555 555555566555555544432 3
Q ss_pred HHHHHHHHHH
Q 007059 135 GSAFTLLFYM 144 (619)
Q Consensus 135 ~~~~~lll~~ 144 (619)
+++.+|++++
T Consensus 563 ~~l~~L~l~l 572 (1592)
T KOG2301|consen 563 KALGNLVLFL 572 (1592)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 63
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=46.97 E-value=29 Score=28.17 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=28.9
Q ss_pred eCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 391 NTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 391 ~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..||..-..-. .+++.+|++|.|.+... +|. ...+++||.+-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555433332 28899999999999865 443 36789999874
No 64
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=43.81 E-value=4.7e+02 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHhhhh-hhHhHhHhhC
Q 007059 52 GVIARRYLKS-DFIVDLVATL 71 (619)
Q Consensus 52 ~~Ia~~Ylk~-~F~iDlis~l 71 (619)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 3445789998 9999998765
No 65
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.94 E-value=8.3e+02 Score=30.93 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=32.6
Q ss_pred HHHHHHhhhhhhHhHhHhhCchhhHhhhhhhccC--CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 007059 52 GVIARRYLKSDFIVDLVATLPLPQITSYLVIVIP--GTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKT 124 (619)
Q Consensus 52 ~~Ia~~Ylk~~F~iDlis~lPl~~i~~~~~~~~~--~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k~ 124 (619)
++++--+-.-|+.+|+++++=|..=++.-. .| .+..+. ..-++- .++- -.||+.++.+.+.+--.
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl--~~~~~~~~GR---vIl~~d--~i~~-t~rLl~~f~V~~~lGPy 919 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRL--LPIDSIYSGR---VILCFD--FILF-TLRLLHYFTVSKQLGPY 919 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEe--cCccceecce---eeeeeh--HHHH-HHHHhhheeeccccCch
Confidence 344444444599999999986643332222 23 111111 111111 1121 55788888776655433
No 66
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=41.88 E-value=59 Score=28.49 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHHHHHhh---------cCC---C-HHHHHhhCChhHHHHHHHHHHHHH
Q 007059 316 QLPEGLRERVRRFLQYKWLAT---------RGV---D-EESILQSLPLDLRRTIQRHLCLAF 364 (619)
Q Consensus 316 ~lp~~L~~rV~~y~~y~w~~~---------~~~---~-e~~ll~~LP~~Lr~dI~~~l~~~l 364 (619)
-||+++|..|..-....-... .+. . ..++|..||++||.+|..+-....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 489999999855433321100 000 0 257999999999999988876554
No 67
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.33 E-value=7.1e+02 Score=29.97 Aligned_cols=15 Identities=33% Similarity=0.373 Sum_probs=11.6
Q ss_pred HHHhhhh-hhHhHhHh
Q 007059 55 ARRYLKS-DFIVDLVA 69 (619)
Q Consensus 55 a~~Ylk~-~F~iDlis 69 (619)
.++|+++ |.++|++=
T Consensus 492 ~~~y~~s~wN~ld~~i 507 (798)
T KOG3599|consen 492 LGRYVRSKWNWLDLAI 507 (798)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 4588888 99888753
No 68
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=40.08 E-value=35 Score=38.48 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCC
Q 007059 241 YCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQL 317 (619)
Q Consensus 241 ~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~l 317 (619)
.||||++.....-|. |+.|.....++.+-++-++-+++.+--.+|++..|. .|.|..-+..+|+..++..+
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 599999999997554 999999999998888888888877777777777764 34444445555565555444
No 69
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.82 E-value=7.3e+02 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=16.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhch
Q 007059 7 LVRAVTLLRSMVDALFFAHIIVKFR 31 (619)
Q Consensus 7 ~~~~~~~~~~~~d~~f~~Di~l~F~ 31 (619)
+...|-+++.++..+|+.-+++++.
T Consensus 414 ~~~~Wn~lDf~m~siyl~s~~lr~~ 438 (822)
T KOG3609|consen 414 LAFWWNWLDFAMISIYLASFILRAV 438 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777776654
No 70
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.42 E-value=1.6e+02 Score=27.34 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------------hHHHHHHHHHHHHHHHHHHh
Q 007059 270 MVICILGLILFSYLLGKMQNYVQST-------------TAKLEDWRIRRRDTEEWMRH 314 (619)
Q Consensus 270 i~i~i~G~ilfa~lIg~~~~~l~~~-------------~~~~~e~r~k~~~~~~~m~~ 314 (619)
+++.++|+.+||++++-+...-... ....++|+.+++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6788999999999998764322111 23677899999888866653
No 71
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=37.76 E-value=1e+02 Score=28.24 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=37.3
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecC-CcceeeEeeecCCCCeecch
Q 007059 386 LYSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNG-GRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~-g~~~~~~~~~l~~G~~fGe~ 442 (619)
+....+.||......-.+ ..++++|++|...+...+. +++.. ...+.+||.+--.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ip 88 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVVP 88 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEEC
Confidence 445677888876544433 5789999999999986543 22222 4788999977433
No 72
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=36.79 E-value=98 Score=27.78 Aligned_cols=48 Identities=15% Similarity=0.289 Sum_probs=35.0
Q ss_pred HceEEEeCCCcEE-EcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 385 RLYSSLNTRDTYL-IREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 385 ~l~~~~~~kge~I-i~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
.++...+++|+-+ .+--...++.|+|++|...+... ++ ...+++|+.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3556778888875 44444479999999999998873 33 3678888876
No 73
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.77 E-value=91 Score=27.90 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 386 LYSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
.....+.||..+-.---+ .....+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 346678899988777776 67999999999999875 33 3788999998665
No 74
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.80 E-value=8.8e+02 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=30.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHH
Q 007059 315 RQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLC 361 (619)
Q Consensus 315 ~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~ 361 (619)
.+||+.|+..|..++.... +..-.+++.++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhh
Confidence 4689999999988764433 23345788888888777766653
No 75
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=32.55 E-value=1.4e+02 Score=34.09 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007059 241 YCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQ 292 (619)
Q Consensus 241 ~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~ 292 (619)
.++||+-..|-.-|-|.-+|....-++..++++=+.+++.|--.+|++..|-
T Consensus 616 sAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 616 SAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 4677666667667888889998889999999988888888888888887764
No 76
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.38 E-value=7.2e+02 Score=26.83 Aligned_cols=29 Identities=7% Similarity=0.351 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007059 300 DWRIRRRDTEEWMRHRQLPEGLRERVRRF 328 (619)
Q Consensus 300 e~r~k~~~~~~~m~~~~lp~~L~~rV~~y 328 (619)
+++-..+++++-+++..-+|+++.|+|.=
T Consensus 219 ~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~ 247 (363)
T COG1377 219 KLKMTKQEVKDEYKQSEGDPEVKSRIRQM 247 (363)
T ss_pred HccCcHHHHHHHHhhccCChhhhHHHHHH
Confidence 44555568888899999999999988863
No 77
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=29.83 E-value=81 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=28.0
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceE
Q 007059 342 ESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYS 388 (619)
Q Consensus 342 ~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~ 388 (619)
.++|..||+++|.+|...+ --+..++++.+..+...++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 4688888888887776544 66777888888888776653
No 78
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=29.74 E-value=1.1e+02 Score=21.04 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCC-----hhHHHHHHHHH
Q 007059 304 RRRDTEEWMRHRQLP-----EGLRERVRRFL 329 (619)
Q Consensus 304 k~~~~~~~m~~~~lp-----~~L~~rV~~y~ 329 (619)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999999 48888888874
No 79
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.44 E-value=15 Score=33.32 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=18.1
Q ss_pred hhhhhhh-hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007059 575 LLAPRLS-TKRLSLRVPAFNPDDSSMKMPKLFKPTDPDFSA 614 (619)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (619)
+.|+-|- ++-|+|+. +=-||+||||+-
T Consensus 45 vvaa~FiPtisGvrsl-------------L~i~pPEPd~~~ 72 (165)
T COG4016 45 VVAAMFIPTISGVRSL-------------LDIKPPEPDFNY 72 (165)
T ss_pred EEEEeecchhHhHHHH-------------hCCCCCCCCcch
Confidence 3445566 77777761 236899999964
No 80
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=27.98 E-value=2.4e+02 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 007059 137 AFTLLFYMLASHIIGATWYFFSF 159 (619)
Q Consensus 137 ~~~lll~~l~~H~~ac~wyll~~ 159 (619)
+..++++++..++.++..+.-..
T Consensus 101 ~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 101 ILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccchhheeccccc
Confidence 44445555555556666665554
No 81
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=27.59 E-value=61 Score=25.14 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.5
Q ss_pred HHHhhCChhHHHHHHHHH
Q 007059 343 SILQSLPLDLRRTIQRHL 360 (619)
Q Consensus 343 ~ll~~LP~~Lr~dI~~~l 360 (619)
++++.||.+|++++...+
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 588999999999988765
No 82
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=27.46 E-value=1.5e+02 Score=24.81 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=43.9
Q ss_pred HceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEE
Q 007059 385 RLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVK 464 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~ 464 (619)
......+.||..+-.-.-...+..||++|.+.- ++ ..+.+|+++=.. +-+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~p--------------~g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRLP--------------PGSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE---------------TTEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEeC--------------CCCccccC
Confidence 345667889988887777778889999999762 22 235888876444 12556788
Q ss_pred EcceEEEEE
Q 007059 465 SLTEVEAFA 473 (619)
Q Consensus 465 Alt~~ell~ 473 (619)
+-+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 83
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=27.43 E-value=1.9e+02 Score=27.20 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=33.3
Q ss_pred cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEe
Q 007059 404 VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFAL 474 (619)
Q Consensus 404 ~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L 474 (619)
.+++.+|++|.+.+.. +|+ .....+||.+ +.|+. ++.+..+-..+.++..
T Consensus 95 YDEi~~VlEG~L~i~~--~G~-----~~~A~~GDvi--------~iPkG------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI--DGQ-----TVTAKPGDVI--------FIPKG------STITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEE--TTE-----EEEEETT-EE--------EE-TT-------EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEE--CCE-----EEEEcCCcEE--------EECCC------CEEEEecCCCEEEEEE
Confidence 4799999999998873 354 3678899976 23343 5666666677777654
No 84
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=26.98 E-value=2.6e+02 Score=20.55 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007059 268 FSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDT 308 (619)
Q Consensus 268 f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~ 308 (619)
++.+..+..++....+...++.+-.......++++..-+++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445566666666666666666666665554
No 85
>PHA03029 hypothetical protein; Provisional
Probab=24.24 E-value=3.5e+02 Score=22.09 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 262 YILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 262 ~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
++.|.+|-++..++=.++--.+||.+-.++-|.+.-
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ 37 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKI 37 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887777778888888888766543
No 86
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.49 E-value=2.9e+02 Score=29.69 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007059 262 YILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRR 327 (619)
Q Consensus 262 ~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~ 327 (619)
.....++.++..++..++.++++-.+..+.-..-.-.++++-..+++++-+++..-+|+++.|+|+
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 176 DLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344556666666666666666555555555444444455555667888999999999999888875
No 87
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.33 E-value=2.7e+02 Score=30.02 Aligned_cols=63 Identities=8% Similarity=0.206 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007059 265 EILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRR 327 (619)
Q Consensus 265 E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~ 327 (619)
..+..++..++..++.++++-.+..+.-..-.-.++++-..+++++-.++..-+|+++.|+|+
T Consensus 172 ~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 172 VIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444444444444444444444333333344555566888888888889988888875
No 88
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.33 E-value=2.7e+02 Score=29.81 Aligned_cols=62 Identities=6% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007059 267 LFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRF 328 (619)
Q Consensus 267 if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y 328 (619)
++..+..+++.++.++++-.+..+.-..-.-.++++-..+++++-+++..-+|+++.|.|+-
T Consensus 178 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 178 VGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 44444444444444444433444433333333445555668889999999999999888864
No 89
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.83 E-value=3e+02 Score=29.68 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007059 263 ILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRR 327 (619)
Q Consensus 263 ~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~ 327 (619)
....+..++..++..++.++++-.+..+.-..-.-.++++-..+++++-.++..-+|+++.|.|+
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 182 ALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 34445555555555555555444444444333333444555566888888888888888888775
No 90
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=22.71 E-value=3.6e+02 Score=26.28 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=33.2
Q ss_pred eEEEeCCCcEE---------EcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYL---------IREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~I---------i~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
-...+.||... +++.....++|+|++|...+...+...+ .....+.+|+.+-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~--~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE--ARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc--EEEEEECCCCEEE
Confidence 45567777742 3333334599999999998886433211 1146789999764
No 91
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=22.14 E-value=5.3e+02 Score=30.15 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHceEEEeCCCcEEEcCCCCcC-eEEEEEee
Q 007059 373 QMDQQLLDAICERLYSSLNTRDTYLIREGDPVN-EMIFIIRG 413 (619)
Q Consensus 373 ~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~-~myFI~~G 413 (619)
..++...++.+..++++...+|++|+++|+..+ +-|-++++
T Consensus 223 e~T~~~~~ea~~~v~~V~I~~gqiIv~~ge~It~~~~~~L~~ 264 (700)
T COG1480 223 EQTENLRQEALSKVEPVKISKGQIIVKEGEIITDEDYVILDL 264 (700)
T ss_pred HHHHHHHHHHHhccCceEEecCceEeecCceecHHHHHHHHH
Confidence 467778888999999999999999999998865 34444443
No 92
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.29 E-value=2.5e+02 Score=30.36 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=34.7
Q ss_pred ceEEEeCCCcEEEcCC-CCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 386 LYSSLNTRDTYLIREG-DPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 386 l~~~~~~kge~Ii~eG-d~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
+....+.||...-.-= ...+++++|++|.+++...++..... ...+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~--~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR--TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE--EEEECCCCEE
Confidence 4566778887654322 33679999999999998654322111 3569999965
No 93
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=21.26 E-value=4.7e+02 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007059 135 GSAFTLLFYMLASHIIGATWYFF 157 (619)
Q Consensus 135 ~~~~~lll~~l~~H~~ac~wyll 157 (619)
..++.++.|++..|++|++-.+.
T Consensus 450 ~L~~Iv~~Y~~~~~llG~i~l~~ 472 (800)
T TIGR00934 450 CLCSIVLVYFLGFNILGFVLLLP 472 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999886554
Done!