Query 007059
Match_columns 619
No_of_seqs 425 out of 3110
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 7.6E-33 2.6E-37 294.3 12.6 187 236-497 159-345 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.8E-30 6.2E-35 252.4 24.3 191 293-498 2-192 (198)
3 3ukn_A Novel protein similar t 100.0 1.3E-31 4.4E-36 263.4 16.2 206 288-507 1-206 (212)
4 3bpz_A Potassium/sodium hyperp 100.0 2.6E-30 8.8E-35 252.3 22.9 189 292-496 2-190 (202)
5 1orq_C Potassium channel; volt 99.8 6.1E-20 2.1E-24 182.1 18.5 185 5-293 35-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 5.7E-19 2E-23 164.1 16.9 144 341-497 5-148 (160)
7 3gyd_A CNMP-BD protein, cyclic 99.7 4.7E-17 1.6E-21 156.5 16.9 150 341-501 13-167 (187)
8 3dn7_A Cyclic nucleotide bindi 99.7 9E-17 3.1E-21 154.5 17.5 149 362-536 6-155 (194)
9 3ocp_A PRKG1 protein; serine/t 99.7 3.2E-17 1.1E-21 149.2 12.4 131 347-492 7-137 (139)
10 3mdp_A Cyclic nucleotide-bindi 99.7 1.1E-16 3.9E-21 145.3 14.9 132 363-503 6-139 (142)
11 1wgp_A Probable cyclic nucleot 99.7 1.3E-17 4.3E-22 151.2 7.4 129 363-491 6-134 (137)
12 2r9r_B Paddle chimera voltage 99.7 6.7E-17 2.3E-21 179.1 12.6 247 7-362 237-490 (514)
13 4ev0_A Transcription regulator 99.7 1.2E-15 4E-20 149.0 19.8 126 365-501 1-127 (216)
14 3idb_B CAMP-dependent protein 99.7 1.4E-16 4.8E-21 148.8 12.6 128 353-491 28-155 (161)
15 2pqq_A Putative transcriptiona 99.7 3.3E-16 1.1E-20 143.2 14.2 122 362-494 4-126 (149)
16 2z69_A DNR protein; beta barre 99.7 9.5E-16 3.2E-20 141.1 14.7 127 362-498 11-138 (154)
17 3dv8_A Transcriptional regulat 99.7 2.6E-15 8.8E-20 147.0 18.3 126 363-499 3-131 (220)
18 3fx3_A Cyclic nucleotide-bindi 99.7 1.3E-15 4.5E-20 151.1 15.8 129 360-499 8-137 (237)
19 3d0s_A Transcriptional regulat 99.6 1.4E-15 4.7E-20 150.0 14.7 127 362-499 5-132 (227)
20 1vp6_A CNBD, cyclic-nucleotide 99.6 2.2E-15 7.5E-20 136.3 14.8 122 361-499 9-130 (138)
21 3e97_A Transcriptional regulat 99.6 4E-15 1.4E-19 147.0 17.8 128 362-500 5-133 (231)
22 3iwz_A CAP-like, catabolite ac 99.6 5.5E-15 1.9E-19 145.6 18.6 127 362-498 10-142 (230)
23 3dkw_A DNR protein; CRP-FNR, H 99.6 1.9E-15 6.7E-20 148.6 14.2 128 362-499 8-136 (227)
24 2gau_A Transcriptional regulat 99.6 8.6E-15 2.9E-19 144.7 17.0 123 366-499 13-136 (232)
25 3pna_A CAMP-dependent protein 99.6 5E-15 1.7E-19 137.2 14.3 118 359-491 34-151 (154)
26 3shr_A CGMP-dependent protein 99.6 6.6E-15 2.2E-19 151.5 15.8 135 344-493 20-154 (299)
27 1zyb_A Transcription regulator 99.6 3.6E-15 1.2E-19 147.9 13.0 126 362-497 17-145 (232)
28 2fmy_A COOA, carbon monoxide o 99.6 5.3E-15 1.8E-19 145.1 13.4 120 363-500 4-123 (220)
29 1ft9_A Carbon monoxide oxidati 99.6 7.7E-15 2.6E-19 144.3 11.8 118 364-499 1-118 (222)
30 2oz6_A Virulence factor regula 99.6 7.1E-14 2.4E-18 135.3 18.5 119 374-499 1-120 (207)
31 3ryp_A Catabolite gene activat 99.6 5.2E-14 1.8E-18 136.6 17.5 121 369-499 2-123 (210)
32 4ava_A Lysine acetyltransferas 99.6 2.2E-14 7.4E-19 150.0 15.7 128 362-501 12-139 (333)
33 2d93_A RAP guanine nucleotide 99.6 2.9E-15 9.8E-20 135.4 6.3 124 349-487 2-127 (134)
34 3kcc_A Catabolite gene activat 99.5 1.4E-13 4.6E-18 139.1 17.8 118 372-499 55-173 (260)
35 3shr_A CGMP-dependent protein 99.5 3.7E-14 1.3E-18 145.9 13.0 127 359-496 153-281 (299)
36 2qcs_B CAMP-dependent protein 99.5 1.4E-13 4.8E-18 140.7 17.1 128 359-495 153-280 (291)
37 1o5l_A Transcriptional regulat 99.5 8.2E-14 2.8E-18 136.2 13.6 143 368-536 4-147 (213)
38 2qcs_B CAMP-dependent protein 99.5 2.4E-13 8.3E-18 138.9 17.3 127 358-499 34-160 (291)
39 3of1_A CAMP-dependent protein 99.5 8.8E-14 3E-18 138.1 13.2 118 360-491 122-239 (246)
40 2a9h_A Voltage-gated potassium 99.5 5.6E-14 1.9E-18 130.8 10.6 63 237-299 83-145 (155)
41 3tnp_B CAMP-dependent protein 99.5 2.2E-13 7.4E-18 147.5 15.8 128 353-491 135-262 (416)
42 3of1_A CAMP-dependent protein 99.5 9.4E-14 3.2E-18 137.9 11.7 119 361-494 5-123 (246)
43 4din_B CAMP-dependent protein 99.5 9.1E-14 3.1E-18 148.7 11.4 130 359-497 244-373 (381)
44 3vou_A ION transport 2 domain 99.4 1.2E-12 4.1E-17 121.2 15.3 86 239-324 53-148 (148)
45 1o7f_A CAMP-dependent RAP1 gua 99.4 5E-13 1.7E-17 146.3 14.8 138 347-494 26-164 (469)
46 3e6c_C CPRK, cyclic nucleotide 99.4 4E-13 1.4E-17 134.5 11.7 120 366-499 12-132 (250)
47 4din_B CAMP-dependent protein 99.4 6E-13 2.1E-17 142.3 13.7 125 357-496 124-248 (381)
48 4h33_A LMO2059 protein; bilaye 99.4 2.3E-13 7.7E-18 124.4 7.5 92 239-330 44-135 (137)
49 2bgc_A PRFA; bacterial infecti 99.4 1E-11 3.6E-16 123.3 19.2 118 372-500 2-124 (238)
50 3tnp_B CAMP-dependent protein 99.4 9.1E-13 3.1E-17 142.6 12.3 121 361-492 265-392 (416)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 1.4E-12 4.8E-17 142.7 12.9 123 358-494 332-456 (469)
52 3la7_A Global nitrogen regulat 99.4 4.9E-12 1.7E-16 126.2 15.7 115 376-499 30-148 (243)
53 2ih3_C Voltage-gated potassium 99.3 3.8E-12 1.3E-16 113.9 10.1 58 238-295 61-118 (122)
54 4f7z_A RAP guanine nucleotide 99.3 1.8E-11 6.3E-16 146.4 15.0 136 344-490 24-160 (999)
55 3cf6_E RAP guanine nucleotide 99.2 1.9E-11 6.5E-16 140.1 11.4 133 342-489 12-146 (694)
56 3eff_K Voltage-gated potassium 99.2 5E-11 1.7E-15 109.1 11.2 89 238-327 40-129 (139)
57 3b02_A Transcriptional regulat 99.2 1.2E-10 4.2E-15 111.8 12.7 92 389-498 2-94 (195)
58 4f7z_A RAP guanine nucleotide 99.1 2.8E-10 9.5E-15 136.2 14.1 114 359-486 333-448 (999)
59 2zcw_A TTHA1359, transcription 99.1 3E-10 1E-14 109.6 11.3 97 382-497 1-100 (202)
60 3rvy_A ION transport protein; 99.1 3.9E-10 1.3E-14 115.5 12.3 62 236-297 178-245 (285)
61 2q67_A Potassium channel prote 99.0 2.1E-09 7.3E-14 94.7 12.7 60 239-298 50-109 (114)
62 2k1e_A Water soluble analogue 99.0 1.7E-10 5.8E-15 99.9 2.6 58 239-296 41-98 (103)
63 3ouf_A Potassium channel prote 98.9 5.1E-09 1.7E-13 89.5 11.1 56 239-294 33-88 (97)
64 3ldc_A Calcium-gated potassium 98.8 8.1E-09 2.8E-13 85.4 7.9 53 239-291 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 5.2E-10 1.8E-14 105.4 -0.1 62 239-300 68-129 (166)
66 1xl4_A Inward rectifier potass 98.7 3E-08 1E-12 102.0 9.4 55 238-292 82-136 (301)
67 3um7_A Potassium channel subfa 98.6 1.6E-07 5.5E-12 96.4 10.6 56 238-293 115-170 (309)
68 1p7b_A Integral membrane chann 98.5 7.9E-08 2.7E-12 100.0 6.9 56 239-294 97-152 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 3.7E-07 1.3E-11 94.6 11.0 57 238-294 78-134 (321)
70 3sya_A G protein-activated inw 98.4 2.7E-06 9.3E-11 88.3 14.7 59 239-297 92-152 (340)
71 4gx0_A TRKA domain protein; me 98.2 3.4E-06 1.2E-10 94.5 11.4 53 239-291 52-105 (565)
72 3um7_A Potassium channel subfa 98.2 9.5E-07 3.3E-11 90.7 5.1 59 239-297 225-289 (309)
73 3ukm_A Potassium channel subfa 98.2 2.9E-06 9.8E-11 85.8 8.1 55 238-292 93-147 (280)
74 3spc_A Inward-rectifier K+ cha 98.2 5.4E-06 1.8E-10 86.2 10.2 58 238-295 94-153 (343)
75 3ukm_A Potassium channel subfa 98.1 2.6E-06 9E-11 86.1 5.3 57 239-295 202-265 (280)
76 4dxw_A Navrh, ION transport pr 97.9 0.00022 7.5E-09 70.1 15.7 48 7-73 40-88 (229)
77 1lnq_A MTHK channels, potassiu 97.9 8.9E-07 3E-11 92.5 -1.8 55 240-294 47-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.3 0.00054 1.8E-08 62.7 8.0 49 8-76 51-99 (147)
79 1ors_C Potassium channel; volt 96.9 0.0019 6.4E-08 57.9 7.4 50 6-75 34-83 (132)
80 3fjs_A Uncharacterized protein 66.5 23 0.0008 29.6 8.3 67 386-473 38-104 (114)
81 2l53_B CAM, voltage-gated sodi 66.3 5.1 0.00017 26.0 2.9 21 504-524 3-23 (31)
82 2kxw_B Sodium channel protein 65.5 5.2 0.00018 25.2 2.8 21 504-524 3-23 (27)
83 2ozj_A Cupin 2, conserved barr 65.0 34 0.0012 28.2 9.1 65 389-474 43-107 (114)
84 3rns_A Cupin 2 conserved barre 64.4 27 0.00092 33.3 9.3 68 386-474 39-106 (227)
85 2pfw_A Cupin 2, conserved barr 59.1 52 0.0018 27.0 9.2 68 386-474 36-103 (116)
86 1yhf_A Hypothetical protein SP 57.4 43 0.0015 27.4 8.4 68 386-474 42-109 (115)
87 3kg2_A Glutamate receptor 2; I 56.3 9.2 0.00031 43.7 5.0 55 238-293 563-617 (823)
88 3lwc_A Uncharacterized protein 55.2 28 0.00097 29.6 6.9 46 388-441 44-89 (119)
89 1yfu_A 3-hydroxyanthranilate-3 48.0 22 0.00075 32.8 5.0 35 403-440 54-88 (174)
90 4e2g_A Cupin 2 conserved barre 47.4 60 0.0021 27.1 7.8 48 386-440 43-90 (126)
91 3d0j_A Uncharacterized protein 46.5 31 0.0011 30.6 5.6 65 399-477 45-110 (140)
92 1o5u_A Novel thermotoga mariti 44.3 65 0.0022 26.5 7.2 47 386-440 33-79 (101)
93 2gu9_A Tetracenomycin polyketi 41.6 44 0.0015 27.0 5.8 47 387-440 24-73 (113)
94 3h8u_A Uncharacterized conserv 41.6 38 0.0013 28.3 5.5 49 386-440 41-90 (125)
95 4axo_A EUTQ, ethanolamine util 41.3 65 0.0022 28.8 7.1 31 403-440 83-113 (151)
96 1dgw_A Canavalin; duplicated s 39.7 36 0.0012 31.1 5.3 52 386-440 43-94 (178)
97 2bnm_A Epoxidase; oxidoreducta 39.3 98 0.0033 28.2 8.5 49 389-440 122-173 (198)
98 2qnk_A 3-hydroxyanthranilate 3 38.6 70 0.0024 31.7 7.4 58 402-476 49-106 (286)
99 1v70_A Probable antibiotics sy 37.9 53 0.0018 25.9 5.6 47 387-440 31-78 (105)
100 2q30_A Uncharacterized protein 35.9 1.4E+02 0.0047 23.8 8.1 68 387-474 36-105 (110)
101 3bcw_A Uncharacterized protein 35.3 30 0.001 29.8 3.7 46 389-441 54-99 (123)
102 3rns_A Cupin 2 conserved barre 34.9 1.3E+02 0.0043 28.4 8.6 68 386-474 155-223 (227)
103 1zvf_A 3-hydroxyanthranilate 3 34.6 36 0.0012 31.3 4.3 63 378-440 13-91 (176)
104 3es4_A Uncharacterized protein 34.3 45 0.0015 28.5 4.7 46 390-442 48-93 (116)
105 3d82_A Cupin 2, conserved barr 33.7 86 0.003 24.7 6.3 51 404-475 50-100 (102)
106 3ibm_A Cupin 2, conserved barr 31.4 66 0.0023 28.9 5.7 47 387-440 59-105 (167)
107 4b29_A Dimethylsulfoniopropion 31.3 71 0.0024 30.4 5.9 47 389-441 137-183 (217)
108 2i45_A Hypothetical protein; n 30.9 43 0.0015 27.2 3.9 68 391-478 35-102 (107)
109 2o1q_A Putative acetyl/propion 30.6 78 0.0027 27.7 5.9 52 386-442 46-97 (145)
110 3es1_A Cupin 2, conserved barr 29.0 54 0.0019 30.0 4.6 48 386-439 81-128 (172)
111 2fqp_A Hypothetical protein BP 28.6 36 0.0012 27.3 3.0 50 387-441 21-71 (97)
112 3bu7_A Gentisate 1,2-dioxygena 28.5 42 0.0014 35.1 4.2 49 387-441 126-174 (394)
113 3jzv_A Uncharacterized protein 28.4 67 0.0023 29.0 5.1 46 388-440 57-102 (166)
114 3kgz_A Cupin 2 conserved barre 27.8 70 0.0024 28.5 5.1 45 389-440 49-93 (156)
115 1lr5_A Auxin binding protein 1 26.8 68 0.0023 28.4 4.8 54 387-440 44-99 (163)
116 2b8m_A Hypothetical protein MJ 26.1 72 0.0025 26.2 4.6 45 389-440 32-77 (117)
117 4i4a_A Similar to unknown prot 26.0 1.1E+02 0.0036 25.5 5.8 79 388-487 38-120 (128)
118 1fi2_A Oxalate oxidase, germin 25.7 1.3E+02 0.0045 27.7 6.8 53 386-440 74-130 (201)
119 2q1z_B Anti-sigma factor CHRR, 25.6 1.3E+02 0.0046 27.7 6.8 65 385-474 126-192 (195)
120 1uij_A Beta subunit of beta co 25.1 72 0.0025 33.5 5.3 53 385-440 50-102 (416)
121 1o4t_A Putative oxalate decarb 24.7 99 0.0034 26.3 5.3 46 388-440 61-107 (133)
122 2f4p_A Hypothetical protein TM 24.7 1.1E+02 0.0039 26.6 5.8 48 387-440 51-98 (147)
123 3l2h_A Putative sugar phosphat 24.1 87 0.003 27.6 5.0 46 387-439 49-96 (162)
124 1y9q_A Transcriptional regulat 23.9 1.5E+02 0.0051 26.8 6.8 45 389-440 109-155 (192)
125 1sfn_A Conserved hypothetical 23.9 2.9E+02 0.0098 26.2 9.1 65 388-475 54-118 (246)
126 3i7d_A Sugar phosphate isomera 23.6 73 0.0025 28.5 4.4 47 387-440 46-94 (163)
127 1vj2_A Novel manganese-contain 23.5 79 0.0027 26.6 4.4 46 388-440 52-97 (126)
128 4e2q_A Ureidoglycine aminohydr 23.4 1.4E+02 0.0048 29.3 6.7 69 388-476 74-142 (266)
129 2ea7_A 7S globulin-1; beta bar 22.6 84 0.0029 33.2 5.2 54 384-440 61-114 (434)
130 1sfn_A Conserved hypothetical 22.5 1.2E+02 0.0042 29.0 6.0 51 385-442 166-217 (246)
131 2vqa_A SLL1358 protein, MNCA; 22.1 1.3E+02 0.0046 30.3 6.6 51 387-440 55-107 (361)
132 2opk_A Hypothetical protein; p 22.1 85 0.0029 26.0 4.2 34 402-440 51-84 (112)
133 3h7j_A Bacilysin biosynthesis 21.7 1.3E+02 0.0044 28.7 6.0 47 386-439 36-82 (243)
134 3ht1_A REMF protein; cupin fol 21.6 83 0.0028 26.8 4.2 46 390-440 45-90 (145)
135 2pyt_A Ethanolamine utilizatio 21.5 2.4E+02 0.0082 24.2 7.2 45 388-441 61-105 (133)
136 2cav_A Protein (canavalin); vi 21.2 95 0.0033 32.9 5.3 53 385-440 87-139 (445)
137 1j58_A YVRK protein; cupin, de 20.5 1.5E+02 0.005 30.4 6.5 51 386-439 81-132 (385)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=7.6e-33 Score=294.29 Aligned_cols=187 Identities=22% Similarity=0.355 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhC
Q 007059 236 IRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHR 315 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~ 315 (619)
+..|..|+||+++|+||+||||++|.+..+++++++++++|++++++.+|.+.+.++... ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~------~~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV------RR------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
Confidence 346889999999999999999999999999999999999999999999999987765321 10
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCc
Q 007059 316 QLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDT 395 (619)
Q Consensus 316 ~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge 395 (619)
+++. .+.+.++++|+|+++++++++.++..++.+.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 024678889999999999999999999999999999
Q ss_pred EEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeC
Q 007059 396 YLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALR 475 (619)
Q Consensus 396 ~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~ 475 (619)
.|+++||+++++|||.+|.|+++..+ + ..+++|++|||.+++ .+ .++..+++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l----~~-----~~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI----SG-----EPRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh----CC-----CCcceEEEECccEEEEEEe
Confidence 99999999999999999999998754 1 578999999999553 22 2578999999999999999
Q ss_pred HHHHHHHHHHcHHHHHHHHHHH
Q 007059 476 AEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 476 ~edf~~l~~~~p~l~~~~l~~~ 497 (619)
+++|.++++++|++.....+..
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~l 345 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKTA 345 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999998877655443
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.8e-30 Score=252.43 Aligned_cols=191 Identities=24% Similarity=0.407 Sum_probs=173.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhcc
Q 007059 293 STTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFA 372 (619)
Q Consensus 293 ~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~ 372 (619)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567788999999999999999999999999999999999997 5789999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccc
Q 007059 373 QMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVS 452 (619)
Q Consensus 373 ~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s 452 (619)
+++++++..|+..++++.|+||++|+++||+++.+|||.+|.|+++.. +|+ .+..+++|++||+.+++. +
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~-~g~----~~~~l~~G~~fGe~~~~~----~- 150 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS-DGV----IATSLSDGSYFGEICLLT----R- 150 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT-TSC----EEEEECTTCEESCHHHHH----S-
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec-CCe----EEEEecCCCEechHHHcC----C-
Confidence 999999999999999999999999999999999999999999999973 343 268999999999996642 2
Q ss_pred cCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 007059 453 TLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAF 498 (619)
Q Consensus 453 ~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~ 498 (619)
.+++++++|+++|+++.|++++|.++++++|.+...+++.+.
T Consensus 151 ----~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 151 ----ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp ----SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ----CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 258899999999999999999999999999998876655443
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.3e-31 Score=263.44 Aligned_cols=206 Identities=22% Similarity=0.369 Sum_probs=176.2
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhh
Q 007059 288 QNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRR 367 (619)
Q Consensus 288 ~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~ 367 (619)
++++++++.+..+|+++++.+++||+++++|++|+.||++|++|.|..+++.+++++++.||++||.+|..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred chhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhh
Q 007059 368 VPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWA 447 (619)
Q Consensus 368 v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~a 447 (619)
+|+|+++++++++.|+..++++.|+||++|+++||+++++|||.+|.|+++. +| ..+..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~----~~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN----TVLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS----CEEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC----eEEEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999986 23 237899999999999543
Q ss_pred hcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhhh
Q 007059 448 LMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRG 507 (619)
Q Consensus 448 l~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~~~~~ 507 (619)
.+. .++++++++|+++|+++.|++++|.++++++|.+..++++...+.+....+.
T Consensus 152 --~~~---~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~ 206 (212)
T 3ukn_A 152 --KEQ---VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206 (212)
T ss_dssp --SSS---CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC
T ss_pred --cCC---CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccc
Confidence 111 0158899999999999999999999999999999988877777666554443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2.6e-30 Score=252.34 Aligned_cols=189 Identities=23% Similarity=0.404 Sum_probs=170.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhhchhc
Q 007059 292 QSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFF 371 (619)
Q Consensus 292 ~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F 371 (619)
|+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5678889999999999999999999999999999999999997 578999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhccc
Q 007059 372 AQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPV 451 (619)
Q Consensus 372 ~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~ 451 (619)
.+++++++..|+..++++.|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.+++. +
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~----~ 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLT----R 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHH----C
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhc----C
Confidence 999999999999999999999999999999999999999999999986 34443 4689999999986642 2
Q ss_pred ccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 007059 452 STLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQH 496 (619)
Q Consensus 452 s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~ 496 (619)
.+++++++|+++|+++.|++++|.++++++|.+...+.+.
T Consensus 151 -----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 151 -----GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp -----SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred -----CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 2578999999999999999999999999999877655444
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.84 E-value=6.1e-20 Score=182.12 Aligned_cols=185 Identities=16% Similarity=0.262 Sum_probs=128.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhhHhhhhhhcc
Q 007059 5 YTLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVI 84 (619)
Q Consensus 5 ~~~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~i~~~~~~~~ 84 (619)
......+..++.+++++|.+|++++|.++ ++ .++|+|+ +++|+++++|+..+.....
T Consensus 35 ~~~~~~l~~~d~~~~~iF~~e~~lr~~~~---~~----------------~~~y~~~-~iiDllailP~~~~~~~~~--- 91 (223)
T 1orq_C 35 GEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVKK-TLYEIPALVPAGLLALIEG--- 91 (223)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHHHHHHTT---SC----------------HHHHHHH-HHHHCTTHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccc---cc----------------HHHHHHH-hHHHHHHHHHHHHHHHHhc---
Confidence 34566788999999999999999999987 21 4799998 9999999999976542111
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHH-hHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 007059 85 PGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMK-TAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQH 163 (619)
Q Consensus 85 ~~~~~~~~~~~~~~L~li~l~qyl~Rl~ri~~l~~~i~k-~~~~~~~~~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~ 163 (619)
. ......+|++|+++ +.|++|+.+..++..+ ....+.. .+....+++.++..|+.||++|++.-
T Consensus 92 -~------~~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~e~---- 156 (223)
T 1orq_C 92 -H------LAGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAADK---IRFYHLFGAVMLTVLYGAFAIYIVEY---- 156 (223)
T ss_dssp -H------HHTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTS----
T ss_pred -c------hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 0 00112345455444 5555555543322222 1111211 12222333445678899999887620
Q ss_pred hHHHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHHHHHH
Q 007059 164 ACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCL 243 (619)
Q Consensus 164 ~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~sl 243 (619)
++.++| ...|..|+
T Consensus 157 -------------------------------~~~~~~-----------------------------------~~~~~~s~ 170 (223)
T 1orq_C 157 -------------------------------PDPNSS-----------------------------------IKSVFDAL 170 (223)
T ss_dssp -------------------------------SSTTCS-----------------------------------CCSHHHHH
T ss_pred -------------------------------CCcCCC-----------------------------------cCcchhHH
Confidence 000111 13578899
Q ss_pred HHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007059 244 WWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQS 293 (619)
Q Consensus 244 yw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~ 293 (619)
||++.|+||+||||++|.+..|++++++++++|++++|+.+|++.+.+++
T Consensus 171 y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 171 WWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=5.7e-19 Score=164.10 Aligned_cols=144 Identities=20% Similarity=0.316 Sum_probs=119.4
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe
Q 007059 341 EESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420 (619)
Q Consensus 341 e~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~ 420 (619)
.+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 421 NGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 421 ~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
+ . .+..+++|++||+..++ .+. ..++..+++|.++|+++.|++++|.++++++|.+...+++..
T Consensus 85 --~--~--~~~~~~~G~~fG~~~~~----~~~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--E--VVAILGKGDVFGDVFWK----EAT---LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--E--EEEEEETTCEEECCTTT----CSS---CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--E--EEEEecCCCEeCcHHHh----cCc---ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 36899999999999543 111 025889999999999999999999999999998887665544
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.73 E-value=4.7e-17 Score=156.48 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=126.1
Q ss_pred HHHHHhhCChhH----HHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEE
Q 007059 341 EESILQSLPLDL----RRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVE 416 (619)
Q Consensus 341 e~~ll~~LP~~L----r~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~ 416 (619)
+..+.+.++|+| +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 455666777775 3455556678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHH
Q 007059 417 SSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQ 495 (619)
Q Consensus 417 ~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~ 495 (619)
++..+ +|++.. +..+++|++||+..++ .+. ++..+++|+++|+++.|++++|.++++++|.+...+++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l----~~~-----~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI----DGM-----PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH----HCC-----CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh----CCC-----CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 99875 455443 6899999999999653 122 57899999999999999999999999999998877665
Q ss_pred HHHHhh
Q 007059 496 HAFRYY 501 (619)
Q Consensus 496 ~~~r~y 501 (619)
...+..
T Consensus 162 ~l~~~l 167 (187)
T 3gyd_A 162 RLLQLL 167 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 8
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.72 E-value=9e-17 Score=154.54 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=119.4
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
..+++++|.|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 457788999999999999999999999999999999999999999999999999999864 555544 68999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRY 520 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~~~~~~~~~~~q~a~~r~ 520 (619)
+.. ++..+ .++..+++|+++|+++.|++++|.+++.++|.+....+ ..+....+..
T Consensus 84 e~~---~~~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~----------------~~~~~~l~~~ 139 (194)
T 3dn7_A 84 DYM---AFQKQ-----QPADFYIQSVENCELLSITYTEQENLFERIPALERYFR----------------LVYQKSFAAA 139 (194)
T ss_dssp CHH---HHHHT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH----------------HHHHHHHHHH
T ss_pred ehH---HHhcC-----CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH----------------HHHHHHHHHH
Confidence 872 22222 25789999999999999999999999999997766443 3334445566
Q ss_pred HHHHhHHHHHhhhccc
Q 007059 521 KRRKKAVELAIKEGLY 536 (619)
Q Consensus 521 ~~r~~~~~~~~~e~ry 536 (619)
.+|.......++++||
T Consensus 140 ~~~~~~l~~~~~~~Rl 155 (194)
T 3dn7_A 140 QLRSKFQHMYSKEEQY 155 (194)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHhcCCHHHHH
Confidence 7777788888899988
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=3.2e-17 Score=149.16 Aligned_cols=131 Identities=20% Similarity=0.295 Sum_probs=113.3
Q ss_pred hCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcce
Q 007059 347 SLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAG 426 (619)
Q Consensus 347 ~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~ 426 (619)
++|+.+|.+...+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 333
Q ss_pred eeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHH
Q 007059 427 FYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSK 492 (619)
Q Consensus 427 ~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~ 492 (619)
.+..+.+|++||+..++ .+ .++..+++|+++|+++.|++++|.++++++|.++.+
T Consensus 83 --~~~~~~~G~~fGe~~~l----~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAIL----YN-----CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHHH----HC-----CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHHH----CC-----CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 36899999999999654 12 257899999999999999999999999999977653
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=1.1e-16 Score=145.27 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=109.6
Q ss_pred HHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCccee-eEeeecCCCCeec
Q 007059 363 AFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGF-YNSITLKSGDFCG 440 (619)
Q Consensus 363 ~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~-~~~~~l~~G~~fG 440 (619)
++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.. .++..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 46889999999999999999999999999999999999999999999999999998654 333321 1158899999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhh
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSH 503 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~ 503 (619)
+.++ ..+ .++..+++|+++|+++.|++++|.++++++|.+...+++...+..++
T Consensus 86 ~~~~----~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 86 VSSL----IKP-----YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp GGGS----STT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHH----cCC-----CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 8854 222 25889999999999999999999999999999988777666554443
No 11
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=1.3e-17 Score=151.16 Aligned_cols=129 Identities=70% Similarity=1.088 Sum_probs=107.4
Q ss_pred HHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 363 AFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 363 ~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
++++++|+|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45788999999999999999999999999999999999999999999999999976555666654323499999999999
Q ss_pred hHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 443 LLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 443 ~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
.+++.+...+..+.++++++++|+++|+++.|++++|.++++++|.+++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 7533343332222224789999999999999999999999999997654
No 12
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.69 E-value=6.7e-17 Score=179.06 Aligned_cols=247 Identities=12% Similarity=0.182 Sum_probs=125.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCchhhHhhhhhhccC
Q 007059 7 LVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPLPQITSYLVIVIP 85 (619)
Q Consensus 7 ~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl~~i~~~~~~~~~ 85 (619)
....+.+++.++.++|.+|++++|.++ +. .++|+++ |+++|+++++|+...++...
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR~~~~---~~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~---- 293 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVRFFAC---PS----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTE---- 293 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHS---SC----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHH----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhC---Cc----------------HHHHHhchhHHHHHHHHHHHHHHHHhhh----
Confidence 345788999999999999999999876 21 2489998 89999999999865443221
Q ss_pred CCCCCCc--cchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHhHhHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007059 86 GTDYQAP--DHANGTIVLIVFLQYIPRVLILITLNER---IMKTAGVIAKISWSGSAFTLL-FYMLASHIIGATWYFFSF 159 (619)
Q Consensus 86 ~~~~~~~--~~~~~~L~li~l~qyl~Rl~ri~~l~~~---i~k~~~~~~~~~~~~~~~~ll-l~~l~~H~~ac~wyll~~ 159 (619)
...+.. ......+|++| +.|++|++++.+. +......+... ...+..++ +.++..+++|+++|++.
T Consensus 294 -~~~~~~~~~~~~~~lrvlR----llRvlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e- 365 (514)
T 2r9r_B 294 -SNKSVLQFQNVRRVVQIFR----IMRILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAE- 365 (514)
T ss_dssp -TSCSHHHHHTTHHHHHHHH----HHGGGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -ccccchhhhhHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheee-
Confidence 111100 01123344333 4444444444433 22222222111 11122222 23355777888877651
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCccccccCCCCCccccccccccccccccccccCCCCcccchhhhhhcccchhhHHHH
Q 007059 160 KRQHACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKY 239 (619)
Q Consensus 160 ~~~~~cw~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y 239 (619)
. ....+| +..|
T Consensus 366 -~---------------------------------~~~~~~-----------------------------------F~s~ 376 (514)
T 2r9r_B 366 -A---------------------------------DERDSQ-----------------------------------FPSI 376 (514)
T ss_dssp -T---------------------------------TCTTCS-----------------------------------CSSH
T ss_pred -c---------------------------------cCCCcc-----------------------------------ccch
Confidence 0 000111 2346
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCCh
Q 007059 240 CYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPE 319 (619)
Q Consensus 240 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~ 319 (619)
..|+||++.|+||+||||++|.+..+++|+++++++|++++++.+|.+.+.++....+..+ ++..+..++++.-...|.
T Consensus 377 ~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~ 455 (514)
T 2r9r_B 377 PDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPS 455 (514)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred hhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCcc
Confidence 7899999999999999999999999999999999999999999999999877766543222 111122223333333333
Q ss_pred hHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHH
Q 007059 320 GLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCL 362 (619)
Q Consensus 320 ~L~~rV~~y~~y~w~~~~~~~e~~ll~~LP~~Lr~dI~~~l~~ 362 (619)
....+ + + +.+...++.-..+|...++.++...-..
T Consensus 456 ~~~l~--~---~---~~~~~~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 456 SPDLK--K---S---RSASTISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp -------------------------------------------
T ss_pred chhHH--h---c---ccCCCccccccccccccccccccccccc
Confidence 22211 0 0 1222334445566777777666554433
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.69 E-value=1.2e-15 Score=148.98 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=107.6
Q ss_pred hhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchh
Q 007059 365 VRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEEL 443 (619)
Q Consensus 365 l~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~ 443 (619)
|+++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 467899999999999999999999999999999999999999999999999999764 455533 79999999999986
Q ss_pred HhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 007059 444 LTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYY 501 (619)
Q Consensus 444 l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~y 501 (619)
++ .+. ++..+++|+++|+++.|++++|.++++++|.+...+++...+.+
T Consensus 79 ~~----~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 79 LL----DEG-----ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL 127 (216)
T ss_dssp HH----HCC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hc----CCC-----CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 53 222 47899999999999999999999999999998877666555433
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=1.4e-16 Score=148.76 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeee
Q 007059 353 RRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSIT 432 (619)
Q Consensus 353 r~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~ 432 (619)
+.+-......++++++|+|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.. +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999999866676644 689
Q ss_pred cCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 433 LKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 433 l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
+.+|++||+..++ .+ .++..+++|+++|+++.|++++|.++++++|.++.
T Consensus 106 ~~~G~~fGe~~~~----~~-----~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELALM----YN-----TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGGT----CC-----CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHHH----cC-----CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 9999999998553 22 25889999999999999999999999999997654
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=3.3e-16 Score=143.21 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=107.2
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.. +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 457889999999999999999999999999999999999999999999999999999765 355433 79999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRL 494 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l 494 (619)
+.+++ .+ .++..+++|+++|+++.|++++|.++++++|.+...++
T Consensus 82 ~~~~~----~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 82 ELSLF----DP-----GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp GGGGT----SC-----EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred hHHhc----CC-----CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 98543 22 25789999999999999999999999999998776443
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=9.5e-16 Score=141.12 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=107.9
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 567999999999999999999999999999999999999999999999999999999754 355433 68999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAF 498 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~ 498 (619)
+..++ .+. +++..+++|+++|+++.|++++|.++++++|.+...+++...
T Consensus 89 ~~~~~----~~~----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~ 138 (154)
T 2z69_A 89 EAMMF----MDT----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 138 (154)
T ss_dssp GGGGG----SSC----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhhc----cCC----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHH
Confidence 99553 121 237899999999999999999999999999988876655443
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.66 E-value=2.6e-15 Score=146.96 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=108.0
Q ss_pred HHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCe--e
Q 007059 363 AFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDF--C 439 (619)
Q Consensus 363 ~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~--f 439 (619)
++++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 57889999999999999999999999999999999999999999999999999999764 455543 799999999 6
Q ss_pred cchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 440 GEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 440 Ge~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
|+.++ ..+ .++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 81 g~~~~----~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 81 SASCI----MRS-----IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGGG----CTT-----CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHH----hCC-----CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 77743 222 2588999999999999999999999999999988766555443
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.65 E-value=1.3e-15 Score=151.09 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=112.5
Q ss_pred HHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCe
Q 007059 360 LCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDF 438 (619)
Q Consensus 360 l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~ 438 (619)
...++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 34678999999999999999999999999999999999999999999999999999999864 555543 799999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
||+..++ .+ .++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 86 ~G~~~~~----~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 86 FGEAVAL----RN-----TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp ECHHHHH----HT-----CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred echHHHh----cC-----CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999654 12 2578999999999999999999999999999888766555443
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.64 E-value=1.4e-15 Score=149.95 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=111.6
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999999765 455543 79999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+.+++ .+ .++..+++|+++|+++.|++++|.++++++|.+...+++...+
T Consensus 83 ~~~~~----~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 83 ELSIF----DP-----GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp CHHHH----SC-----SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred eHHHc----CC-----CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99653 12 2588999999999999999999999999999988777665544
No 20
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=2.2e-15 Score=136.30 Aligned_cols=122 Identities=25% Similarity=0.393 Sum_probs=107.3
Q ss_pred HHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 361 ~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3678999999999999999999999999999999999999999999999999999998654 1 4789999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+..++ .+. ++..+++|+++|+++.|++++|.++++++|.+...+++.+.+
T Consensus 81 ~~~~~----~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALI----SGE-----PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH----HCC-----CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhc----cCC-----CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99654 122 477999999999999999999999999999988766655543
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.64 E-value=4e-15 Score=147.00 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=111.5
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999999765 455543 79999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRY 500 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ 500 (619)
+.+++ .+ .++..+++|+++|+++.|++++|.+++.++|.+...+++...+.
T Consensus 83 ~~~~~----~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (231)
T 3e97_A 83 ETAVL----AH-----QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR 133 (231)
T ss_dssp TTTTT----CC-----CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eHHHh----CC-----CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99542 22 35889999999999999999999999999999888776665543
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.64 E-value=5.5e-15 Score=145.63 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=99.5
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
...+++.++|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 457888999999999999999999999999999999999999999999999999999764 455543 79999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHc-----HHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQF-----KRLHSKRLQHAF 498 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~-----p~l~~~~l~~~~ 498 (619)
+..++ ..+ +++..+++|+++|+++.|++++|.+++.++ |.+...+++...
T Consensus 88 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~ 142 (230)
T 3iwz_A 88 EMGLF---IES-----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLS 142 (230)
T ss_dssp CGGGT---SCC-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHH
T ss_pred ehhhh---cCC-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 99543 211 257899999999999999999999999999 988776554443
No 23
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.9e-15 Score=148.56 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=110.6
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeec
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fG 440 (619)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 568899999999999999999999999999999999999999999999999999998754 455543 68999999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+..++ .+. |.+..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 86 ~~~~~----~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 86 EAMMF----MDT----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp CTTTT----TTC----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred eHHhc----CCC----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 98542 222 2278999999999999999999999999999988766655544
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=8.6e-15 Score=144.68 Aligned_cols=123 Identities=13% Similarity=0.192 Sum_probs=105.4
Q ss_pred hhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhH
Q 007059 366 RRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELL 444 (619)
Q Consensus 366 ~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l 444 (619)
.++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 36799999999999999999999999999999999999999999999999999654 355543 799999999999965
Q ss_pred hhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 445 TWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 445 ~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+ .+. ++..+++|+++|+++.|++++|.++++++|.+...+++...+
T Consensus 91 ~----~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 91 F----AEE-----TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp H----HTS-----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h----CCC-----CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4 122 478999999999999999999999999999988777665544
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=5e-15 Score=137.21 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=104.4
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCe
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDF 438 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~ 438 (619)
.....+++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ .+..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~----~~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE----EEEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE----EEEEecCCCE
Confidence 4457789999999999999999999999999999999999999999999999999999997 333 2688999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
||+.+++. +. ++..+++|+++|+++.|++++|.++++++|.+..
T Consensus 108 fGe~~~~~----~~-----~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALIY----GT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHHH----CC-----CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhhc----CC-----CcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 99996641 22 4789999999999999999999999999996654
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=6.6e-15 Score=151.49 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=119.5
Q ss_pred HHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCC
Q 007059 344 ILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGG 423 (619)
Q Consensus 344 ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g 423 (619)
...++|+..|.+...++..++++++++|++++++.++.|+..++.+.|++|++|+++||+++.+|||++|.|+++. +|
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~g 97 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EG 97 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--TT
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--CC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999954 33
Q ss_pred cceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHH
Q 007059 424 RAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKR 493 (619)
Q Consensus 424 ~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~ 493 (619)
+ .+..+.+|++||+.+++ .+ .+++++++|.++|+++.|++++|..++.++|......
T Consensus 98 ~----~~~~~~~G~~fGe~~ll----~~-----~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~ 154 (299)
T 3shr_A 98 V----KLCTMGPGKVFGELAIL----YN-----CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 154 (299)
T ss_dssp E----EEEEECTTCEESCSGGG----TT-----TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred E----EEEEeCCCCeeeHhHHh----cC-----CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHH
Confidence 2 26899999999999653 22 3688999999999999999999999999999655433
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.60 E-value=3.6e-15 Score=147.92 Aligned_cols=126 Identities=11% Similarity=0.182 Sum_probs=109.0
Q ss_pred HHHhhhchhcccchHHHHHHHHHH--ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCe
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICER--LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDF 438 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~--l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~ 438 (619)
...++++|+|.+++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~~ 94 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPYL 94 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCCe
Confidence 567899999999999999999998 999999999999999999999999999999998654 455543 699999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
||+..++ .+. +++..+++|+++|+++.|++++|.+++.++|.+...+++..
T Consensus 95 fG~~~~~----~~~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 145 (232)
T 1zyb_A 95 IEPQSLF----GMN----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIV 145 (232)
T ss_dssp ECGGGGS----SSC----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHH
T ss_pred eeehHHh----CCC----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHH
Confidence 9999542 221 23789999999999999999999999999998877655443
No 28
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.60 E-value=5.3e-15 Score=145.13 Aligned_cols=120 Identities=7% Similarity=0.113 Sum_probs=106.7
Q ss_pred HHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 363 AFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 363 ~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +.++++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 35788999999999999999999999999999999999999999999999999997555666644 699999999998
Q ss_pred hHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 007059 443 LLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRY 500 (619)
Q Consensus 443 ~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ 500 (619)
++..+++|+++|+++.|++++|.++++++|.+...+++...+.
T Consensus 81 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 123 (220)
T 2fmy_A 81 ---------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL 123 (220)
T ss_dssp ---------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ---------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 1568999999999999999999999999999887776655443
No 29
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.57 E-value=7.7e-15 Score=144.28 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=104.3
Q ss_pred HhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchh
Q 007059 364 FVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEEL 443 (619)
Q Consensus 364 ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~ 443 (619)
+++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +.++++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG-~- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC-M- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE-S-
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec-C-
Confidence 4678999999999999999999999999999999999999999999999999998555666644 69999999999 2
Q ss_pred HhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 444 LTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 444 l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
++..+++|+++|+++.|++++|.++++++|.+...+++...+
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 377899999999999999999999999999887766555443
No 30
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=7.1e-14 Score=135.29 Aligned_cols=119 Identities=22% Similarity=0.215 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccc
Q 007059 374 MDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVS 452 (619)
Q Consensus 374 ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s 452 (619)
|+++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++ .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~----~~~ 74 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF----EKE 74 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC----C--
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh----cCC
Confidence 578899999999999999999999999999999999999999999765 455543 7999999999999543 111
Q ss_pred cCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 453 TLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 453 ~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
. ..+++..+++|+++|+++.|++++|.++++++|.+...+++...+
T Consensus 75 ~-~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 75 G-SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred C-CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 0 000478999999999999999999999999999888766555443
No 31
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.57 E-value=5.2e-14 Score=136.59 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=100.2
Q ss_pred hhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhh
Q 007059 369 PFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWA 447 (619)
Q Consensus 369 ~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~a 447 (619)
++++.++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 45667899999999999999999999999999999999999999999999764 455543 7999999999999543
Q ss_pred hcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 448 LMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 448 l~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
. + .+++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 78 -~-~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 78 -E-E----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp -S-T----TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred -c-C----CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 1 1 12578999999999999999999999999999888766554443
No 32
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.57 E-value=2.2e-14 Score=150.00 Aligned_cols=128 Identities=14% Similarity=0.169 Sum_probs=111.7
Q ss_pred HHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 362 LAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 362 ~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
.++++++|+|++++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+.+. .+.++.+|++||+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA--IIARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE--EEEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE--EEEEecCCCEeeH
Confidence 46889999999999999999999999999999999999999999999999999999976543333 3789999999999
Q ss_pred hhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 007059 442 ELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYY 501 (619)
Q Consensus 442 ~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~y 501 (619)
.+++ .+ .+++.+++|+++|+++.|++++|.+++ ++|.+..++++...+..
T Consensus 90 ~~l~----~~-----~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 90 IALL----RD-----SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHH----HT-----CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHhc----CC-----CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 9654 22 258899999999999999999999999 99999887766555433
No 33
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=135.37 Aligned_cols=124 Identities=15% Similarity=0.258 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeC-CCcEEEcCCCCcCeEEEEEeeEEEEEEecCCccee
Q 007059 349 PLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNT-RDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGF 427 (619)
Q Consensus 349 P~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~-kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~ 427 (619)
||+.|.+-......++++++++|..++++.++.|+..++.+.|+ +|++|+++||+++.+|||.+|.|+++. .+|+.
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 45555555555567789999999999999999999999999999 999999999999999999999999996 34443
Q ss_pred eEeeecCCCCeecchhHhhhhcccccCCCCccccEE-EEcceEEEEEeCHHHHHHHHHHcH
Q 007059 428 YNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTV-KSLTEVEAFALRAEDLKFVASQFK 487 (619)
Q Consensus 428 ~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv-~Alt~~ell~L~~edf~~l~~~~p 487 (619)
..+.+|++||+..+ ..+. ++..++ +|+++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~----~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT----LDKQ-----YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS----SCCE-----ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh----cCCC-----cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45889999999844 2222 467788 999999999999999999988765
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=1.4e-13 Score=139.15 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=98.3
Q ss_pred ccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcc
Q 007059 372 AQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMP 450 (619)
Q Consensus 372 ~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~ 450 (619)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++ .
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---S-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---C-
Confidence 45899999999999999999999999999999999999999999999764 455543 7999999999999543 1
Q ss_pred cccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 451 VSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 451 ~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
. .+++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 129 ~----~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 129 E----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp T----TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred C----CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 12578999999999999999999999999999888766554443
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=3.7e-14 Score=145.86 Aligned_cols=127 Identities=20% Similarity=0.370 Sum_probs=111.1
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec--CCcceeeEeeecCCC
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN--GGRAGFYNSITLKSG 436 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~--~g~~~~~~~~~l~~G 436 (619)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++. .+..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~--~~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPV--FLRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCE--EEEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcce--EEEEcCCC
Confidence 446788999999999999999999999999999999999999999999999999999999875 45443 37999999
Q ss_pred CeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 007059 437 DFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQH 496 (619)
Q Consensus 437 ~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~ 496 (619)
++||+.+++ .+ .++.++++|.++|+++.|++++|.+++.++|.+..++++.
T Consensus 231 ~~fGe~~ll----~~-----~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 281 (299)
T 3shr_A 231 DWFGEKALQ----GE-----DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED 281 (299)
T ss_dssp CEECGGGGS----SS-----EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHH
T ss_pred CEeChHHHh----CC-----CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHH
Confidence 999999543 23 2588999999999999999999999999999776655443
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=1.4e-13 Score=140.72 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=108.5
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCe
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDF 438 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~ 438 (619)
.+...+++++++|..+++..+..++..++.+.|++|++|+++||+++.+|||.+|.|+++....+......+..+++|++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~ 232 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence 34567788999999999999999999999999999999999999999999999999999865422211233799999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQ 495 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~ 495 (619)
||+.+++ .+ .+++++++|.++|+++.|++++|.+++.++|.+..+.++
T Consensus 233 fGe~~ll----~~-----~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~ 280 (291)
T 2qcs_B 233 FGEIALL----MN-----RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQ 280 (291)
T ss_dssp ECSGGGT----CC-----CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHH
T ss_pred ecHHHHc----CC-----CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHH
Confidence 9999553 22 258899999999999999999999999999987665443
No 37
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.52 E-value=8.2e-14 Score=136.22 Aligned_cols=143 Identities=8% Similarity=0.055 Sum_probs=103.7
Q ss_pred chhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhh
Q 007059 368 VPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTW 446 (619)
Q Consensus 368 v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~ 446 (619)
-|.|+..++...+.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 477888889999999999999999999999999999999999999999999764 455543 7999999999999542
Q ss_pred hhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 007059 447 ALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKA 526 (619)
Q Consensus 447 al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ys~~~~~~~~~~~q~a~~r~~~r~~~ 526 (619)
..+ +++..+++|+++|+++.|++++|.++++++|.+...+++...+ ..+...++...
T Consensus 81 --~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~~~~~~~~~~~ 137 (213)
T 1o5l_A 81 --SSE-----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE----------------HFRVVSEKLFF 137 (213)
T ss_dssp --SSS-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred --cCC-----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 111 2578999999999999999999999999999887655444322 12234455566
Q ss_pred HHHHhhhccc
Q 007059 527 VELAIKEGLY 536 (619)
Q Consensus 527 ~~~~~~e~ry 536 (619)
....++++|+
T Consensus 138 l~~~~~~~Rl 147 (213)
T 1o5l_A 138 LTTKTLREKL 147 (213)
T ss_dssp HHCC------
T ss_pred HhhCCHHHHH
Confidence 6667777777
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=2.4e-13 Score=138.94 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=110.9
Q ss_pred HHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCC
Q 007059 358 RHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGD 437 (619)
Q Consensus 358 ~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~ 437 (619)
.+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ .+..+.+|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~----~~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE----EEEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe----EEEEcCCCC
Confidence 44568899999999999999999999999999999999999999999999999999999997 332 268999999
Q ss_pred eecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 438 FCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 438 ~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
+||+.+++ .+ .++..+++|.++|+++.|++++|..++.++|.+....+....+
T Consensus 108 ~fGe~~l~----~~-----~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELALI----YG-----TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGGT----CC-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh----cC-----CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99998543 22 2588999999999999999999999999999887766554443
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.8e-14 Score=138.08 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=105.3
Q ss_pred HHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 360 LCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 360 l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
+...+++++|+|..+++..+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+++ ++..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcc
Confidence 3456788999999999999999999999999999999999999999999999999999986544 26899999999
Q ss_pred cchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 440 GEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 440 Ge~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
||.+++. + .+++.+++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~~----~-----~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALLN----D-----LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHHH----T-----CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHhC----C-----CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9997642 2 25889999999999999999999999999997654
No 40
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.50 E-value=5.6e-14 Score=130.83 Aligned_cols=63 Identities=11% Similarity=0.326 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 007059 237 RKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLE 299 (619)
Q Consensus 237 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~ 299 (619)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+.+.+.....+.+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999987765443
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=2.2e-13 Score=147.47 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeee
Q 007059 353 RRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSIT 432 (619)
Q Consensus 353 r~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~ 432 (619)
|.+-..+...++++++++|++++++.+..|+..++.+.|++|++|+++||+++.+|||++|.|+++...+|++.. +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 334445567889999999999999999999999999999999999999999999999999999999866676654 689
Q ss_pred cCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHH
Q 007059 433 LKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHS 491 (619)
Q Consensus 433 l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~ 491 (619)
+.+|++||+.+++ .+ .++.++++|+++|+++.|++++|..++.++|.+..
T Consensus 213 l~~G~~fGe~all----~~-----~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 213 YDNRGSFGELALM----YN-----TPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp EESCCEECGGGGT----SC-----CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred ecCCCEEeeHHHh----cC-----CCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 9999999999553 22 25899999999999999999999999999997654
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.4e-14 Score=137.89 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=104.8
Q ss_pred HHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 361 ~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +++. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 36789999999999999999999999999999999999999999999999999999986 3332 58899999999
Q ss_pred chhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHH
Q 007059 441 EELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRL 494 (619)
Q Consensus 441 e~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l 494 (619)
+.+++. +. ++.++++|.++|+++.|++++|..++.++|.......
T Consensus 79 e~~l~~----~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (246)
T 3of1_A 79 ELALMY----NS-----PRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123 (246)
T ss_dssp HHHHHH----TC-----CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHS
T ss_pred hhHHhc----CC-----CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHH
Confidence 986642 22 5889999999999999999999999999996655443
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=9.1e-14 Score=148.66 Aligned_cols=130 Identities=13% Similarity=0.195 Sum_probs=110.8
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCe
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDF 438 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~ 438 (619)
.++..+++++++|..+++..+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+.....++..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 45567889999999999999999999999999999999999999999999999999999976432222234799999999
Q ss_pred ecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 439 CGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 439 fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
||+.+++ .+ .+++++++|+++|+++.|++++|.+++..+|++..+.++..
T Consensus 324 fGe~all----~~-----~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 324 FGEIALL----LN-----RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp ECTTGGG----SC-----CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred echHHHh----CC-----CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999653 22 25889999999999999999999999999998776554433
No 44
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.45 E-value=1.2e-12 Score=121.22 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh----chHHHHHHHHHHHHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNY------VQS----TTAKLEDWRIRRRDT 308 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~------l~~----~~~~~~e~r~k~~~~ 308 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++++... .+. .+.+..+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999998862 222 244455666788899
Q ss_pred HHHHHhCCCChhHHHH
Q 007059 309 EEWMRHRQLPEGLRER 324 (619)
Q Consensus 309 ~~~m~~~~lp~~L~~r 324 (619)
++++++++.|+.|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 45
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.45 E-value=5e-13 Score=146.30 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=119.6
Q ss_pred hCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcc
Q 007059 347 SLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRA 425 (619)
Q Consensus 347 ~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~ 425 (619)
..|+..|.+-..+...+.++++++|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 367888888888888999999999999999999999999999999999999999999999999999999999764 3332
Q ss_pred eeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHH
Q 007059 426 GFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRL 494 (619)
Q Consensus 426 ~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l 494 (619)
....+..+++|++||+.+ + .+ .+++++++|+++|+++.|++++|..++.++|.+...++
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l----~~-----~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-L----DN-----TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp GCEEEEEECTTCEECGGG-G----GT-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred cceEEEEccCCCCcchhh-h----CC-----CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 123479999999999984 2 12 25889999999999999999999999999997665443
No 46
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.43 E-value=4e-13 Score=134.53 Aligned_cols=120 Identities=10% Similarity=0.106 Sum_probs=102.2
Q ss_pred hhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhH
Q 007059 366 RRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELL 444 (619)
Q Consensus 366 ~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l 444 (619)
.++..+..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+ .+
T Consensus 12 ~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 12 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-LY 88 (250)
T ss_dssp CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-CS
T ss_pred hhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-ec
Confidence 33434488999999999999999999999999999999999999999999999764 455543 799999999999 32
Q ss_pred hhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 445 TWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 445 ~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
. .. +..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 89 -------~---~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 89 -------P---TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp -------C---CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred -------C---CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 12 67899999999999999999999999999988776665544
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=6e-13 Score=142.29 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCC
Q 007059 357 QRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSG 436 (619)
Q Consensus 357 ~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G 436 (619)
..+...++++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ .+..+.+|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~----~v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE----WVTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE----EEEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe----EeeeCCCC
Confidence 345567899999999999999999999999999999999999999999999999999999996 333 26789999
Q ss_pred CeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 007059 437 DFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQH 496 (619)
Q Consensus 437 ~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~ 496 (619)
++||+.+++ .+ .++.++++|+++|+++.|++++|..++.++|.+..+.+..
T Consensus 198 ~~fGe~all----~~-----~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~ 248 (381)
T 4din_B 198 GSFGELALI----YG-----TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEE 248 (381)
T ss_dssp CCBCGGGGT----SC-----CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEchHHh----cC-----CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHH
Confidence 999999553 22 2588999999999999999999999999999877655443
No 48
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.41 E-value=2.3e-13 Score=124.35 Aligned_cols=92 Identities=13% Similarity=0.288 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCCCC
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLP 318 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp 318 (619)
|..|+||++.|+||+||||++|.+..+++++++++++|++++++++|.+.+.++....+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 67899999999999999999999999999999999999999999999999998766555444333333333334445666
Q ss_pred hhHHHHHHHHHH
Q 007059 319 EGLRERVRRFLQ 330 (619)
Q Consensus 319 ~~L~~rV~~y~~ 330 (619)
++....++++.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.40 E-value=1e-11 Score=123.30 Aligned_cols=118 Identities=12% Similarity=0.120 Sum_probs=95.2
Q ss_pred ccchHHHHHHHHH--HceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhh
Q 007059 372 AQMDQQLLDAICE--RLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWAL 448 (619)
Q Consensus 372 ~~ls~~~l~~L~~--~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al 448 (619)
++++++.++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++ +|++||+..++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3688999998885 5899999999999999999999999999999999764 455544 5778 99999999543
Q ss_pred cccccCCCCc-cccEEEEc-ceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 007059 449 MPVSTLNLPL-STRTVKSL-TEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRY 500 (619)
Q Consensus 449 ~~~s~~~~~~-s~~tv~Al-t~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r~ 500 (619)
.+. ++ +.+++.|+ ++|+++.|++++|.+++.++|.+...+++...+.
T Consensus 76 -~~~----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (238)
T 2bgc_A 76 -DTE----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQ 124 (238)
T ss_dssp -TTC----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -cCC----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 111 11 36788888 5999999999999999999999888776665443
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.40 E-value=9.1e-13 Score=142.56 Aligned_cols=121 Identities=12% Similarity=0.246 Sum_probs=103.7
Q ss_pred HHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC-------CcceeeEeeec
Q 007059 361 CLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG-------GRAGFYNSITL 433 (619)
Q Consensus 361 ~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~-------g~~~~~~~~~l 433 (619)
+..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+. |++. .+..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~--~l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAV--EIARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------C--EEEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCcee--EEEEe
Confidence 34577888999999999999999999999999999999999999999999999999997653 4443 37999
Q ss_pred CCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHH
Q 007059 434 KSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSK 492 (619)
Q Consensus 434 ~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~ 492 (619)
++|++||+.+++ .+ .+++++++|+++|+++.|++++|.+++..+|.+..+
T Consensus 343 ~~G~~fGE~all----~~-----~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 343 FRGQYFGELALV----TN-----KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp CTTCEESGGGGT----CC-----SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCCCEecHHHHh----CC-----CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 999999999653 22 258999999999999999999999999999976543
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.4e-12 Score=142.71 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=103.5
Q ss_pred HHHHHHHhhhchhcccchHHHHHHHHHHceE-EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCC
Q 007059 358 RHLCLAFVRRVPFFAQMDQQLLDAICERLYS-SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSG 436 (619)
Q Consensus 358 ~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~-~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G 436 (619)
.....+.++++|+|.+++++.+..++..++. +.|++|++|+++||+++.+|||.+|.|+++..+. . ++..+.+|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~--~~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---G--VVCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---E--EEEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---e--eEEEecCC
Confidence 3455788999999999999999999999985 4899999999999999999999999999987432 1 37899999
Q ss_pred CeecchhHhhhhcccccCCCCccccEEEEcc-eEEEEEeCHHHHHHHHHHcHHHHHHHH
Q 007059 437 DFCGEELLTWALMPVSTLNLPLSTRTVKSLT-EVEAFALRAEDLKFVASQFKRLHSKRL 494 (619)
Q Consensus 437 ~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt-~~ell~L~~edf~~l~~~~p~l~~~~l 494 (619)
++||+.+++ .+ .++.++++|++ +|+++.|++++|.+++.++|.+..++.
T Consensus 407 ~~fGe~~ll----~~-----~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 407 DDFGKLALV----ND-----APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp CEECGGGGT----CC-----SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred CEEEEehhh----cC-----CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 999999543 22 25899999999 699999999999999999997765443
No 52
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.38 E-value=4.9e-12 Score=126.15 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=95.5
Q ss_pred HHHHHHHHHHce---EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhccc
Q 007059 376 QQLLDAICERLY---SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPV 451 (619)
Q Consensus 376 ~~~l~~L~~~l~---~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~ 451 (619)
+++++.|+.... .+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++ .+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~----~~ 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL----TG 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH----SS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh----CC
Confidence 677888888888 9999999999999999999999999999999764 455543 7999999999998653 12
Q ss_pred ccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 007059 452 STLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFR 499 (619)
Q Consensus 452 s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~~r 499 (619)
.+ .++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 104 ~~---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 104 NK---SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp CC---SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC---CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 10 1245899999999999999999999999999988776655443
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.33 E-value=3.8e-12 Score=113.86 Aligned_cols=58 Identities=14% Similarity=0.355 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTT 295 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~ 295 (619)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|++.+.+++..
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999999987543
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.28 E-value=1.8e-11 Score=146.38 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=109.4
Q ss_pred HHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCC
Q 007059 344 ILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGG 423 (619)
Q Consensus 344 ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g 423 (619)
.|+.-| .-|.+=-.++-...|+++++|+++++..+.+||..++.+.|++|++|+++||+++.+|+|++|.|.++..+.+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3343323344467789999999999999999999999999999999999999999999999999999975321
Q ss_pred -cceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHHHHHHHHHHcHHHH
Q 007059 424 -RAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLH 490 (619)
Q Consensus 424 -~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~ 490 (619)
......+..+.+|+.||| +++ .+ .||++|++|.++|++++|++++|+.++.++|+..
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all----~n-----~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL----DN-----TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG----GT-----CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc----cC-----CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 111233689999999999 442 12 2589999999999999999999999999998654
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.23 E-value=1.9e-11 Score=140.12 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=111.2
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHhhhchhcccchHHHHHHHHHHce-EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe
Q 007059 342 ESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLY-SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTT 420 (619)
Q Consensus 342 ~~ll~~LP~~Lr~dI~~~l~~~ll~~v~~F~~ls~~~l~~L~~~l~-~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~ 420 (619)
..++.. |+..|.+-......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 345543 444455444555688999999999999999999999998 789999999999999999999999999999975
Q ss_pred cCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcc-eEEEEEeCHHHHHHHHHHcHHH
Q 007059 421 NGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLT-EVEAFALRAEDLKFVASQFKRL 489 (619)
Q Consensus 421 ~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt-~~ell~L~~edf~~l~~~~p~l 489 (619)
|+ . ++.++.+|++||+.+++ .+. ++..+++|++ +|+++.|++++|.++++++|.+
T Consensus 91 --g~-~--il~~l~~Gd~fGe~al~----~~~-----~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 --GK-G--VVCTLHEGDDFGKLALV----NDA-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp --TT-E--EEEEEETTCEECHHHHH----HTC-----BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred --CC-E--EEEEeCCCCEeehHHHh----CCC-----CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 22 2 37999999999998654 222 4789999999 5999999999999999999866
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.22 E-value=5e-11 Score=109.06 Aligned_cols=89 Identities=17% Similarity=0.333 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHhCC
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKL-EDWRIRRRDTEEWMRHRQ 316 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~-~e~r~k~~~~~~~m~~~~ 316 (619)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+...+.....+. +++..+.+.....+..++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999998876554333 233333333332233322
Q ss_pred CChhHHHHHHH
Q 007059 317 LPEGLRERVRR 327 (619)
Q Consensus 317 lp~~L~~rV~~ 327 (619)
+ .++.+|+.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 2 455555544
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.18 E-value=1.2e-10 Score=111.79 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=76.3
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcc
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLT 467 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt 467 (619)
+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+ +++ . + .++..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~-~-----~~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---E-G-----KAYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---T-C-----SBCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---C-C-----CCceeEEEECC
Confidence 579999999999999999999999999999764 455543 799999999999 764 1 1 25789999999
Q ss_pred eEEEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 007059 468 EVEAFALRAEDLKFVASQFKRLHSKRLQHAF 498 (619)
Q Consensus 468 ~~ell~L~~edf~~l~~~~p~l~~~~l~~~~ 498 (619)
+|+++.|++++|. |.+...+++...
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~ 94 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLA 94 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHH
Confidence 9999999999998 877765554443
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.11 E-value=2.8e-10 Score=136.19 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=97.9
Q ss_pred HHHHHHhhhchhcccchHHHHHHHHHHceEEE-eCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCC
Q 007059 359 HLCLAFVRRVPFFAQMDQQLLDAICERLYSSL-NTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGD 437 (619)
Q Consensus 359 ~l~~~ll~~v~~F~~ls~~~l~~L~~~l~~~~-~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~ 437 (619)
....+.+.++|.|.+++...++.|+..+.... ++.|++|++|||.++.+|||++|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 44577899999999999999999999999655 5779999999999999999999999998643221 68899999
Q ss_pred eecchhHhhhhcccccCCCCccccEEEEcce-EEEEEeCHHHHHHHHHHc
Q 007059 438 FCGEELLTWALMPVSTLNLPLSTRTVKSLTE-VEAFALRAEDLKFVASQF 486 (619)
Q Consensus 438 ~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~-~ell~L~~edf~~l~~~~ 486 (619)
+||+.+++ .+ .|+.+||+|.++ |+++++++++|.+++.+-
T Consensus 408 ~FGElALL----~~-----~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 408 DFGKLALV----ND-----APRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EECGGGGT----CS-----CBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cccchhhc----cC-----CCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99999543 33 369999999985 999999999999999763
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.10 E-value=3e-10 Score=109.59 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=75.8
Q ss_pred HHHHceEEEeCCCcEEEcCCCCc--CeEEEEEeeEEEEEEec-CCcceeeEeeecCCCCeecchhHhhhhcccccCCCCc
Q 007059 382 ICERLYSSLNTRDTYLIREGDPV--NEMIFIIRGQVESSTTN-GGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPL 458 (619)
Q Consensus 382 L~~~l~~~~~~kge~Ii~eGd~~--~~myFI~~G~V~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~ 458 (619)
|+..++.+.|++|++|+++||++ +.+|||.+|.|+++..+ +|++.+ +.++.+|++||+ .++. + .+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~----~-----~~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF----G-----QE 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH----T-----CC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC----C-----CC
Confidence 35677889999999999999999 99999999999999764 455543 799999999999 5531 1 24
Q ss_pred cccEEEEcceEEEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 007059 459 STRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHA 497 (619)
Q Consensus 459 s~~tv~Alt~~ell~L~~edf~~l~~~~p~l~~~~l~~~ 497 (619)
+..+++|+++|+++.| +++|. |.+...+++..
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l 100 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHL 100 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHH
Confidence 7899999999999999 98886 77666554443
No 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.09 E-value=3.9e-10 Score=115.54 Aligned_cols=62 Identities=5% Similarity=0.054 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhccCCC-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 236 IRKYCYCLWWGLKNLSSYGQN-LTT-STYILE----ILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 236 ~~~Y~~slyw~l~tlstvG~g-d~~-~~~~~E----~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999 885 665533 78999999999999999999999888755443
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.03 E-value=2.1e-09 Score=94.71 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKL 298 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~ 298 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++......
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999886554443
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.96 E-value=1.7e-10 Score=99.94 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTA 296 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~ 296 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.....
T Consensus 41 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 41 YPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp GGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999999999999999999999988876543
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.94 E-value=5.1e-09 Score=89.53 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.+...++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66799999999999999999999999999999999999999999999999887643
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.82 E-value=8.1e-09 Score=85.41 Aligned_cols=53 Identities=15% Similarity=0.439 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYV 291 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l 291 (619)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++++.+.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999999998865
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.80 E-value=5.2e-10 Score=105.42 Aligned_cols=62 Identities=15% Similarity=0.395 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLED 300 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e 300 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.....+..+
T Consensus 68 ~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp TTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999998876655443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.70 E-value=3e-08 Score=101.97 Aligned_cols=55 Identities=5% Similarity=0.127 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQ 292 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~ 292 (619)
.|..|+||++.|+||+||||++|.+...++++++.+++|++++|+++|.+.+.++
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999888775
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.58 E-value=1.6e-07 Score=96.38 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQS 293 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~ 293 (619)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+...+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999988864
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.53 E-value=7.9e-08 Score=100.01 Aligned_cols=56 Identities=7% Similarity=0.146 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999887654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.51 E-value=3.7e-07 Score=94.60 Aligned_cols=57 Identities=7% Similarity=0.127 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
.|..|+||++.|+||+||||+.|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366799999999999999999999999999999999999999999999999877654
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.41 E-value=2.7e-06 Score=88.32 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTST--YILEILFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~--~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
+..++||++.|+||+||||+.|+ +...++++++.+++|+++.|+++|.+.+-+.....+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 34689999999999999999997 678899999999999999999999998877655443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.24 E-value=3.4e-06 Score=94.48 Aligned_cols=53 Identities=15% Similarity=0.340 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGK-MQNYV 291 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~-~~~~l 291 (619)
|+.|+||++.|+||+||||++|.+..+++|+++++++|++++++.++. +..++
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 44444
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.19 E-value=9.5e-07 Score=90.66 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYILEI------LFSMVICILGLILFSYLLGKMQNYVQSTTAK 297 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~E~------if~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 297 (619)
|+.|+||++.|+||+||||++|.+..++ +++++++++|+.+++++++.+.+.+.....+
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988776 5999999999999999999999988766544
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.17 E-value=2.9e-06 Score=85.84 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQ 292 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~ 292 (619)
.|..|+||++.|+||+||||++|.+...++|+++.+++|+.+++++++++...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999886553
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.17 E-value=5.4e-06 Score=86.19 Aligned_cols=58 Identities=16% Similarity=0.366 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTST--YILEILFSMVICILGLILFSYLLGKMQNYVQSTT 295 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~--~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~ 295 (619)
.+..++||++.|+||+||||..|+ +...++++++.+++|+++.|+++|.+.+-+....
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356799999999999999999864 7889999999999999999999999887775543
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.07 E-value=2.6e-06 Score=86.10 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhccCCCccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007059 239 YCYCLWWGLKNLSSYGQNLTTSTYIL-------EILFSMVICILGLILFSYLLGKMQNYVQSTT 295 (619)
Q Consensus 239 Y~~slyw~l~tlstvG~gd~~~~~~~-------E~if~i~i~i~G~ilfa~lIg~~~~~l~~~~ 295 (619)
|+.|+||++.|+||+||||+.|.+.. -++++++++++|+.+++++++.+..+++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999874 4999999999999999999999988776443
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.90 E-value=0.00022 Score=70.09 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=32.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhh-hhHhHhHhhCch
Q 007059 7 LVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKS-DFIVDLVATLPL 73 (619)
Q Consensus 7 ~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~-~F~iDlis~lPl 73 (619)
....+..++.++-++|.+++++++... +. .++|+++ |-++|++.++|.
T Consensus 40 ~~~~l~~~e~~~~~iF~~E~~lri~~~---~~----------------~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 40 FLETIHLLDYGITIFFVIEILIRFIGE---KQ----------------KADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc---Cc----------------hhHHhcCCcHHHHHHHHHHH
Confidence 445678899999999999999998643 11 4689988 899998877764
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.90 E-value=8.9e-07 Score=92.52 Aligned_cols=55 Identities=15% Similarity=0.417 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007059 240 CYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQST 294 (619)
Q Consensus 240 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~~ 294 (619)
..|+||++.|+||+||||++|.+..+++|+++++++|+++++++++.+...+...
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999998877654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.30 E-value=0.00054 Score=62.69 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhhH
Q 007059 8 VRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQI 76 (619)
Q Consensus 8 ~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~i 76 (619)
...+..++.++-++|.+|.++++..+ |+ .++|+++ -++|++|++|+...
T Consensus 51 ~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------------k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 51 LVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------------HHHHHHH-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------------HHHHHHH-HHHHHHHHHHHHHH
Confidence 44677899999999999999999765 43 5689997 79999999998643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.90 E-value=0.0019 Score=57.90 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=41.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhchheeeeCCCcccCCCeEeeChHHHHHHhhhhhhHhHhHhhCchhh
Q 007059 6 TLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQ 75 (619)
Q Consensus 6 ~~~~~~~~~~~~~d~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~~Ylk~~F~iDlis~lPl~~ 75 (619)
.....+..+++++-++|.+|+++++..+ ++ .++|++ |-++|+++++|+..
T Consensus 34 ~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------------~~~y~~-~niiDllailp~~~ 83 (132)
T 1ors_C 34 EYLVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVK-KTLYEIPALVPAGL 83 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------------TTTTTT-TCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------------HHHHHH-HHHHHHHHHHHHHH
Confidence 3455678899999999999999999764 33 368999 99999999999853
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=66.49 E-value=23 Score=29.64 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=46.5
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEE
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKS 465 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~A 465 (619)
+....+++|..+-.--.+..++++|++|.+++.. +++ ...+.+||.+--. ++ ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip-------~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLG-------AG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CcEEEEe
Confidence 3456688888876655566799999999999876 333 3678999987433 11 2356777
Q ss_pred cceEEEEE
Q 007059 466 LTEVEAFA 473 (619)
Q Consensus 466 lt~~ell~ 473 (619)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88876554
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=66.29 E-value=5.1 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 007059 504 QWRGWGASFIQAAWRRYKRRK 524 (619)
Q Consensus 504 ~~~~~~~~~~q~a~~r~~~r~ 524 (619)
+.+.+++..||.||++|.-|.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999998764
No 82
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=65.53 E-value=5.2 Score=25.15 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 007059 504 QWRGWGASFIQAAWRRYKRRK 524 (619)
Q Consensus 504 ~~~~~~~~~~q~a~~r~~~r~ 524 (619)
+.+.+++..||.||++|..+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999998763
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=64.99 E-value=34 Score=28.22 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=41.9
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcce
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTE 468 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~ 468 (619)
..+.+|..+-....+..++++|++|.+++.. +++ ...+.+||.+=-. ++ ....+.+.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeCCC
Confidence 3456776654444556799999999999776 333 3678999977322 11 2234556677
Q ss_pred EEEEEe
Q 007059 469 VEAFAL 474 (619)
Q Consensus 469 ~ell~L 474 (619)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 776654
No 84
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=64.39 E-value=27 Score=33.29 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=52.4
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEE
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKS 465 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~A 465 (619)
+....+.||+.+-..--+.+.+.+|++|.+++... |+ ...+.+||++=-. ++ ....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p-------~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEIT-------AN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEEC-------SS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 45567899999988777889999999999999863 33 3678999876322 11 3468889
Q ss_pred cceEEEEEe
Q 007059 466 LTEVEAFAL 474 (619)
Q Consensus 466 lt~~ell~L 474 (619)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999977
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=59.12 E-value=52 Score=26.97 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=44.7
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEE
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKS 465 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~A 465 (619)
+....+.||..+-.--....++++|++|.+++.. +++ ...+.+|+.+=-. ++ ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVP-------PH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEEC-------cC-------CceeeEe
Confidence 3445678887653333346789999999998876 333 3678999986322 11 2345667
Q ss_pred cceEEEEEe
Q 007059 466 LTEVEAFAL 474 (619)
Q Consensus 466 lt~~ell~L 474 (619)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=57.36 E-value=43 Score=27.44 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=44.4
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEE
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKS 465 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~A 465 (619)
+....+.||..+-.--....++++|++|.+++.. +++ ...+.+|+.+--. ++ ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVMP-------AG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 3445677887764433346799999999998875 333 3678999987422 11 2345667
Q ss_pred cceEEEEEe
Q 007059 466 LTEVEAFAL 474 (619)
Q Consensus 466 lt~~ell~L 474 (619)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777777654
No 87
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=56.31 E-value=9.2 Score=43.71 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007059 238 KYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQS 293 (619)
Q Consensus 238 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~i~i~G~ilfa~lIg~~~~~l~~ 293 (619)
....++|+++.++...| ++..|.....+++.++++++++++.+.-.+++.++|..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999988766 57789999999999999999999999999999999874
No 88
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=55.20 E-value=28 Score=29.59 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=33.6
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
...+.||..+-.. ...+++++|++|.+++.. +|+ ...+.+||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE
Confidence 4567778665443 367899999999999976 343 367999998743
No 89
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=47.96 E-value=22 Score=32.77 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=28.0
Q ss_pred CcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 403 PVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 403 ~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
+.++++++++|.+.+-..++|+.. ...+++|++|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999999987765422 47899999983
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=47.42 E-value=60 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.5
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
+....+.||..+-.--....++++|++|.+++.. +++ ...+.+|+.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456678888765444445799999999999876 333 36789999863
No 91
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=46.54 E-value=31 Score=30.58 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=40.7
Q ss_pred cCCCCcCeEEEEEeeEEEEEEecCCcc-eeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCHH
Q 007059 399 REGDPVNEMIFIIRGQVESSTTNGGRA-GFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAE 477 (619)
Q Consensus 399 ~eGd~~~~myFI~~G~V~~~~~~~g~~-~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~e 477 (619)
+.-+..+++|+|++|.+.+...+++.. .......+.+|+++-- |+. --.+-.|-++|.++.+...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEeC
Confidence 344567999999999999987643110 0012477899998742 233 1234556677777766543
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=44.27 E-value=65 Score=26.45 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=34.1
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
+....+.+|..-.. ....++++|++|.+++... +|+ ...+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 34566788876544 4468999999999998763 233 36799999874
No 93
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=41.62 E-value=44 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=33.5
Q ss_pred eEEEeCCCcEEEcC--CCC-cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIRE--GDP-VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~e--Gd~-~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
....+.||..+-.. -.. ..++++|++|.+++.. +++ ...+.+||++-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 44567888876544 334 6799999999999876 233 36789998763
No 94
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.59 E-value=38 Score=28.34 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=33.1
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 386 LYSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
+....+.||..+-..-.. ..++++|++|.+++... +++ ...+.+||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 445667888876544344 36899999999988642 333 36788999763
No 95
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=41.31 E-value=65 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=24.4
Q ss_pred CcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 403 PVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 403 ~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 35789999999999985 444 36799999873
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=39.66 E-value=36 Score=31.14 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=36.3
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
+....+.||.....--..++++++|++|.+++...+.+... ...+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 45567888877644433457999999999998765433221 46889999874
No 97
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.30 E-value=98 Score=28.15 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=32.4
Q ss_pred EEeCCCcEEEc---CCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 389 SLNTRDTYLIR---EGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 389 ~~~~kge~Ii~---eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..+.||...-. -.....++++|++|.+++...+++... ...+.+||++-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 45677765431 223347999999999998874422211 46899999874
No 98
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=38.62 E-value=70 Score=31.69 Aligned_cols=58 Identities=9% Similarity=0.328 Sum_probs=39.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeCH
Q 007059 402 DPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRA 476 (619)
Q Consensus 402 d~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~~ 476 (619)
+..++++++++|.+.+-..++|+- ....+++|++|= .|... ..+=++-++|..+.|.+
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~---~~V~i~eGemfl--------lP~gv------~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKH---RDVVIRQGEIFL--------LPARV------PHSPQRFANTVGLVVER 106 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEE---EEEEECTTEEEE--------ECTTC------CEEEEECTTCEEEEEEE
T ss_pred CCCCeEEEEEeCeEEEEEEeCCce---eeEEECCCeEEE--------eCCCC------CcCCcccCCeEEEEEee
Confidence 456899999999999998876642 247899999883 22221 23344566777777763
No 99
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=37.95 E-value=53 Score=25.91 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=32.2
Q ss_pred eEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
....+.||..+-..-.. ..++++|++|.+.+.. +++ ...+.+||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34567788776433323 3579999999999875 233 36789999763
No 100
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=35.89 E-value=1.4e+02 Score=23.78 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred eEEEeCCCcEEEcCCCC-cCeE-EEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEE
Q 007059 387 YSSLNTRDTYLIREGDP-VNEM-IFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVK 464 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~-~~~m-yFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~ 464 (619)
....+.+|..+-..-.. ..++ ++|++|.+++...+ |+ ...+.+||.+--. ++ ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAP-------IS-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEE-------TT-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeC-------CC-------CcEEEE
Confidence 34457788766433222 2466 89999999887532 23 3678999976332 11 234566
Q ss_pred EcceEEEEEe
Q 007059 465 SLTEVEAFAL 474 (619)
Q Consensus 465 Alt~~ell~L 474 (619)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 6677665543
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=35.27 E-value=30 Score=29.80 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=31.9
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
-...||..-.+..+ .+++++|++|.+.+... +|+ ...+++||.+--
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEE
Confidence 34566666554332 38999999999998763 343 367899998743
No 102
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=34.91 E-value=1.3e+02 Score=28.42 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=47.5
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEE
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKS 465 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~A 465 (619)
+....++||..+-..-.+..++++|++|.+++.. +|+ ...+.+||.+=-. .. ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip--------~~------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLP--------AN------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEEC--------TT------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEEC--------CC------CcEEEEe
Confidence 4567789999876555556789999999999875 333 3678999986332 11 2346777
Q ss_pred -cceEEEEEe
Q 007059 466 -LTEVEAFAL 474 (619)
Q Consensus 466 -lt~~ell~L 474 (619)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 103
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=34.62 E-value=36 Score=31.32 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHHceE----EEeCCCcEEEc-CCC----------CcCeEEEEEeeEEEEEEecCCc-ceeeEeeecCCCCeec
Q 007059 378 LLDAICERLYS----SLNTRDTYLIR-EGD----------PVNEMIFIIRGQVESSTTNGGR-AGFYNSITLKSGDFCG 440 (619)
Q Consensus 378 ~l~~L~~~l~~----~~~~kge~Ii~-eGd----------~~~~myFI~~G~V~~~~~~~g~-~~~~~~~~l~~G~~fG 440 (619)
-+++....++| +..-.+++++- -|. +.++++++++|.+.+-..++|. ...+....+++||+|=
T Consensus 13 wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 13 WLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp HHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred HHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 34555566666 43333555432 233 3469999999999999877551 0012247899999983
No 104
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=34.33 E-value=45 Score=28.52 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=32.3
Q ss_pred EeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 390 LNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 390 ~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
..+||..-... +..+++++|++|.+.+...+ |. ...+++||.+--.
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~-----~~~l~aGD~~~~P 93 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-AD-----PVKIGPGSIVSIA 93 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CC-----CEEECTTEEEEEC
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-Ce-----EEEECCCCEEEEC
Confidence 45666665554 33459999999999998643 43 3678999987533
No 105
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=33.68 E-value=86 Score=24.67 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=34.3
Q ss_pred cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEEEEEeC
Q 007059 404 VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALR 475 (619)
Q Consensus 404 ~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~ell~L~ 475 (619)
..++++|++|.+.+... ++ ...+.+|+.+--. ++ ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVIP-------KG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEEEC-------TT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEEC-------CC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999988652 32 3678899876322 11 23455566788888775
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=31.44 E-value=66 Score=28.95 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=32.9
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
....+.||..+-..--...++++|++|.+.+.. +++ ...+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 345667776654333457899999999998875 333 36789999874
No 107
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.32 E-value=71 Score=30.44 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=31.0
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
..+.||...=.--.+.+++|+|++|.++....+ ++ ...+++|+.+=-
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~-----~~~l~pGd~v~i 183 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLRN-AP-----DLMLEPGQTRFH 183 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEETT-SC-----CEEECTTCEEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CC-----EEecCCCCEEEc
Confidence 344555443333355789999999999887642 33 367899997743
No 108
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=30.89 E-value=43 Score=27.25 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=40.2
Q ss_pred eCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcceEE
Q 007059 391 NTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVE 470 (619)
Q Consensus 391 ~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt~~e 470 (619)
..+|+.....-+...++++|++|.+++... +++ ...+.+||.+--. ++ ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFA-DGG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEET-TSC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEEC-CCc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCeE
Confidence 345554333333238999999999998763 323 3679999987322 11 123344456788
Q ss_pred EEEeCHHH
Q 007059 471 AFALRAED 478 (619)
Q Consensus 471 ll~L~~ed 478 (619)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 88776543
No 109
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=30.64 E-value=78 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=35.7
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
+....++||..+-.-..+..+.++|++|..+. ..|.... -..+++|+++-..
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEEEC
Confidence 55678999998877666678889999999873 2232210 1467788877443
No 110
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=28.95 E-value=54 Score=30.04 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=32.1
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
+....++||...-.--....+..+|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 345567777643322233457889999999987632 33 3679999998
No 111
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=28.57 E-value=36 Score=27.30 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=32.0
Q ss_pred eEEEeCCCcEEEcCCCCc-CeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 387 YSSLNTRDTYLIREGDPV-NEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~-~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
....++||...-.--... .++++|++|.+++...++.+ ...+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEe
Confidence 345677877642222223 35999999999987633212 367999998743
No 112
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=28.47 E-value=42 Score=35.11 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=35.8
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 387 YSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
....++||+.+-.---...++|||++|.-..... +|+ ...+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEEE
Confidence 6678899988766555567999999998655443 444 367899998743
No 113
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=28.42 E-value=67 Score=29.02 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=31.5
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
...+.||..+-..-....++++|++|.+++.. +++ ...+.+||++-
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34566766654433445789999999999865 333 36789999774
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.80 E-value=70 Score=28.52 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=30.7
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..+.||..+-..-....++++|++|.+++.. +++ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666554333445789999999999875 333 36788998763
No 115
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.84 E-value=68 Score=28.39 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=33.0
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcc--eeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRA--GFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~--~~~~~~~l~~G~~fG 440 (619)
....+.+|..+-.--....++++|++|.+.+...+++++ .......+.+|+++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 345577776542222235689999999999887542210 000146789999863
No 116
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.08 E-value=72 Score=26.24 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEee-ecCCCCeec
Q 007059 389 SLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSI-TLKSGDFCG 440 (619)
Q Consensus 389 ~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~-~l~~G~~fG 440 (619)
..+.+|..+-.--....++++|++|.+++.. +++. . .+.+||++-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~-----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE-----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC-----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE-----EEEeCCCCEEE
Confidence 4456666542222345689999999998876 2332 4 788999763
No 117
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=26.00 E-value=1.1e+02 Score=25.50 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEc-
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSL- 466 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Al- 466 (619)
...+.+|...-.--....++++|++|.+++.. +++ ...+.+|+++--. ++ ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeCC
Confidence 34566666433333346799999999998876 333 3678999977432 11 11233433
Q ss_pred -ceEE--EEEeCHHHHHHHHHHcH
Q 007059 467 -TEVE--AFALRAEDLKFVASQFK 487 (619)
Q Consensus 467 -t~~e--ll~L~~edf~~l~~~~p 487 (619)
++++ ++.++.+-+..++.+-+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 4344 45667776666655443
No 118
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=25.74 E-value=1.3e+02 Score=27.73 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=35.0
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCC---cceeeEeeecCCCCeec
Q 007059 386 LYSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNGG---RAGFYNSITLKSGDFCG 440 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~g---~~~~~~~~~l~~G~~fG 440 (619)
+....+.+|...-.--.+ ..++++|++|.+++...+++ .+. + ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~-~-~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL-Y-SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE-E-EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE-E-EEEECCCCEEE
Confidence 445677888765332223 57999999999998775432 221 1 36789999874
No 119
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=25.62 E-value=1.3e+02 Score=27.73 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=45.9
Q ss_pred HceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEE
Q 007059 385 RLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVK 464 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~ 464 (619)
.+....+.||..+-.-.....++.+|++|..+ ++ ...+.+|+++=.. .. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~~p--------~g------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEIAD--------QE------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEEEC--------SS------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEEeC--------cC------CccCCE
Confidence 45677899999998888888999999999965 22 1467889986433 11 233455
Q ss_pred E--cceEEEEEe
Q 007059 465 S--LTEVEAFAL 474 (619)
Q Consensus 465 A--lt~~ell~L 474 (619)
+ .+.|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 677877764
No 120
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=25.08 E-value=72 Score=33.54 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=38.5
Q ss_pred HceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 385 RLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
.+....+.||..+..--...+++++|++|..++...+.+... ...+.+||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 456778899987665555578999999999998764433222 46788998873
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.74 E-value=99 Score=26.31 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=31.4
Q ss_pred EEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 388 SSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
...++||..+-.---. ..++++|++|.+++.. +++ ...+.+||.+-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 4567888765322222 3689999999999875 333 36788998763
No 122
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.70 E-value=1.1e+02 Score=26.55 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=32.0
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
....+.||..+-.---...++++|++|.+++... ++. ...+.+|+.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3456677776533333347999999999998763 221 15688998774
No 123
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.14 E-value=87 Score=27.57 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=31.5
Q ss_pred eEEEeCCCcE-E-EcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 387 YSSLNTRDTY-L-IREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 387 ~~~~~~kge~-I-i~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
....+.||.. . .+.-....++++|++|.+++.. +++ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3456788774 2 1222246899999999999875 333 3678999987
No 124
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=23.94 E-value=1.5e+02 Score=26.76 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=31.3
Q ss_pred EEeCCCcEEEc--CCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 389 SLNTRDTYLIR--EGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 389 ~~~~kge~Ii~--eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
..++||...-. -.....++++|++|.+++.. +++ ...+.+||.+-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45677776542 12334799999999999876 333 36799999873
No 125
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.85 E-value=2.9e+02 Score=26.25 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=42.4
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcc
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLT 467 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt 467 (619)
...++||...-..- .+++.+|++|.+++.. +|+ ...+.+||++--. +. ....+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p-------~~-------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLP-------AG-------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEEC-------TT-------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEeCC
Confidence 45678877655442 6789999999999875 343 3679999987433 11 123344447
Q ss_pred eEEEEEeC
Q 007059 468 EVEAFALR 475 (619)
Q Consensus 468 ~~ell~L~ 475 (619)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 78777664
No 126
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.64 E-value=73 Score=28.47 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=31.8
Q ss_pred eEEEeCCCcEEE--cCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLI--REGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii--~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
....+.||.... +.-...+++++|++|.+++... ++ ...+.+|+.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345677877542 2222236999999999998863 33 36789998864
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=23.50 E-value=79 Score=26.60 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
...++||...-.---...++++|++|.+++... ++ ...+.+|+++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 345566655433233467999999999988752 33 36788888763
No 128
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.44 E-value=1.4e+02 Score=29.27 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=45.1
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecchhHhhhhcccccCCCCccccEEEEcc
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLT 467 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~al~~~s~~~~~~s~~tv~Alt 467 (619)
...+.||..--......+++.||++|.+++...+ |+ ...+.+|+++=.. ++ ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~p-------~~-------~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYLP-------PN-------FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEEC-------TT-------CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEEC-------CC-------CCEEEEeCC
Confidence 4567887764223344679999999999997631 33 2678999987332 11 234555568
Q ss_pred eEEEEEeCH
Q 007059 468 EVEAFALRA 476 (619)
Q Consensus 468 ~~ell~L~~ 476 (619)
+++++.+.+
T Consensus 134 ~Ar~l~V~k 142 (266)
T 4e2q_A 134 SATLVVFER 142 (266)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888888865
No 129
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=22.63 E-value=84 Score=33.21 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 384 ERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 384 ~~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
-.+....+.||..+..--..+++++||++|...+...+.+... ...+.+||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 3456778899988766655578999999999988765433222 46788888763
No 130
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.45 E-value=1.2e+02 Score=28.98 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=37.1
Q ss_pred HceEEEeCCCcEEEc-CCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecch
Q 007059 385 RLYSSLNTRDTYLIR-EGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEE 442 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~-eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe~ 442 (619)
.+....++||..+-. +-....+.++|++|++.... +|+ ...+.+||++--.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~~~ 217 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEEEC
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEEEC
Confidence 355678899987764 44456799999999998875 344 3679999987433
No 131
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.15 E-value=1.3e+02 Score=30.28 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=34.8
Q ss_pred eEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecC-CcceeeEeeecCCCCeec
Q 007059 387 YSSLNTRDTYLIREGDP-VNEMIFIIRGQVESSTTNG-GRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 387 ~~~~~~kge~Ii~eGd~-~~~myFI~~G~V~~~~~~~-g~~~~~~~~~l~~G~~fG 440 (619)
....+.||...-..-.. ..++++|++|.+++...++ |+.. ...+.+||++-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 35567788765332233 7899999999999987653 3222 36789999763
No 132
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=22.05 E-value=85 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 402 DPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 402 d~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
...+++++|++|.+++...+ ++. ...+.+||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~--~~~---~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEG--DTA---PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETT--CSS---CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECC--EEE---EEEECCCCEEE
Confidence 34679999999999987633 210 15689999874
No 133
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.66 E-value=1.3e+02 Score=28.69 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=34.6
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCee
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFC 439 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~f 439 (619)
+....+.||..+-.---+..++++|++|.+++.. +|+ ...+.+|+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688888776554557799999999999876 333 3678999844
No 134
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.60 E-value=83 Score=26.76 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=27.9
Q ss_pred EeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 390 LNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 390 ~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
.+.||..+-.--....++++|++|.+++....+++ ...+.+|+++-
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 44455443222223456778999999987323343 36789999763
No 135
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.46 E-value=2.4e+02 Score=24.15 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=31.2
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeecc
Q 007059 388 SSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGE 441 (619)
Q Consensus 388 ~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fGe 441 (619)
...+.||..-.. ...+++++|++|.+++.. +|+ ...+.+||.+--
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEEE
Confidence 445677743222 236799999999999876 343 357999998743
No 136
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=21.16 E-value=95 Score=32.93 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=38.1
Q ss_pred HceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCcceeeEeeecCCCCeec
Q 007059 385 RLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCG 440 (619)
Q Consensus 385 ~l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~g~~~~~~~~~l~~G~~fG 440 (619)
.+....+.||..+..---.++++++|++|.+++...+.+... ...+.+||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 355678899987765544578999999999988765433222 46789999874
No 137
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.52 E-value=1.5e+02 Score=30.36 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=35.3
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceeeEeeecCCCCee
Q 007059 386 LYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNG-GRAGFYNSITLKSGDFC 439 (619)
Q Consensus 386 l~~~~~~kge~Ii~eGd~~~~myFI~~G~V~~~~~~~-g~~~~~~~~~l~~G~~f 439 (619)
+....+.||..+-.--....++++|++|.+++...+. |+.. ...+.+||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEE
Confidence 3456678888654333337899999999999987653 4421 2478999976
Done!