Citrus Sinensis ID: 007059

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MTVDYTLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVIPGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKEGLYEIVEEEYPVEDSAGGAIESGAEGLAVEYATDAESPGTALLAPRLSTKRLSLRVPAFNPDDSSMKMPKLFKPTDPDFSADHHDN
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccECccHHHHHHHHHHcccEEEEEEcccccHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEEEEEEEEccccccccEEEEEEccccCCccccHHHccccccccccccccccEEEEEEEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccc
MTVDYTLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVIPGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKE***************************AV*********************************************************
xxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MTVDYTLVRAVTLLRSMVDALFFAHIIVKFRTAFVAPSSRVVGRGDLVRDPGVIARRYLKSDFIVDLVATLPLPQITSYLVIVIPGTDYQAPDHANGTIVLIVFLQYIPRVLILITLNERIMKTAGVIAKISWSGSAFTLLFYMLASHIIGATWYFFSFKRQHACWIQVCEGERNSTHSPSCDPIFIDCSVSELPERNAWLEHSSLYDECATEEQQFPFGIFYDAIDKQVAETNFIRKYCYCLWWGLKNLSSYGQNLTTSTYILEILFSMVICILGLILFSYLLGKMQNYVQSTTAKLEDWRIRRRDTEEWMRHRQLPEGLRERVRRFLQYKWLATRGVDEESILQSLPLDLRRTIQRHLCLAFVRRVPFFAQMDQQLLDAICERLYSSLNTRDTYLIREGDPVNEMIFIIRGQVESSTTNGGRAGFYNSITLKSGDFCGEELLTWALMPVSTLNLPLSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKRLQHAFRYYSHQWRGWGASFIQAAWRRYKRRKKAVELAIKEGLYEIVEEEYPVEDSAGGAIESGAEGLAVEYATDAESPGTALLAPRLSTKRLSLRVPAFNPDDSSMKMPKLFKPTDPDFSADHHDN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable cyclic nucleotide-gated ion channel 16 Putative cyclic nucleotide-gated ion channel.probableQ9SU64

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WGP, chain A
Confidence level:very confident
Coverage over the Query: 363-491
View the alignment between query and template
View the model in PyMOL
Template: 3UKN, chain A
Confidence level:very confident
Coverage over the Query: 298-507
View the alignment between query and template
View the model in PyMOL
Template: 3BEH, chain A
Confidence level:very confident
Coverage over the Query: 236-303,326-329,360-363
View the alignment between query and template
View the model in PyMOL
Template: 1O5L, chain A
Confidence level:confident
Coverage over the Query: 377-499,516-530
View the alignment between query and template
View the model in PyMOL
Template: 2R9R, chain B
Confidence level:confident
Coverage over the Query: 7-38,55-161,195-200,236-299
View the alignment between query and template
View the model in PyMOL