Query 007060
Match_columns 619
No_of_seqs 405 out of 2438
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 6E-183 1E-187 1459.4 34.5 587 1-617 169-764 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 3E-178 6E-183 1496.5 56.7 613 1-619 175-788 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 8E-160 2E-164 1310.9 55.6 544 53-618 19-564 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 8E-157 2E-161 1288.6 55.6 526 83-617 15-554 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 2E-152 5E-157 1297.3 55.5 527 83-618 17-560 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 5E-152 1E-156 1248.1 50.7 508 97-614 1-522 (522)
7 PLN03233 putative glutamate-tR 100.0 8E-145 2E-149 1189.9 51.2 501 92-614 7-512 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 1E-141 2E-146 1175.8 52.1 506 91-613 47-554 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 5E-139 1E-143 1189.9 53.3 502 93-611 210-716 (722)
10 KOG1147 Glutamyl-tRNA syntheta 100.0 1E-129 3E-134 1038.7 38.9 504 91-612 195-704 (712)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 2E-125 3E-130 1048.4 50.8 453 93-597 98-556 (567)
12 TIGR00463 gltX_arch glutamyl-t 100.0 4E-125 9E-130 1043.7 47.9 465 93-604 90-557 (560)
13 COG0008 GlnS Glutamyl- and glu 100.0 5E-95 1.1E-99 792.0 2.4 447 97-594 10-472 (472)
14 PLN02627 glutamyl-tRNA synthet 100.0 1.4E-76 3.1E-81 651.4 24.0 309 89-433 38-384 (535)
15 cd00807 GlnRS_core catalytic c 100.0 9.5E-76 2E-80 590.1 23.8 238 96-405 1-238 (238)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.6E-76 3.5E-81 622.1 13.1 306 96-417 1-314 (314)
17 PRK12410 glutamylglutaminyl-tR 100.0 1.5E-75 3.3E-80 633.2 21.0 289 98-419 1-304 (433)
18 PRK12558 glutamyl-tRNA synthet 100.0 4.7E-74 1E-78 624.0 22.9 286 96-419 2-310 (445)
19 cd09287 GluRS_non_core catalyt 100.0 1.1E-72 2.4E-77 569.4 23.9 238 96-405 1-240 (240)
20 KOG1149 Glutamyl-tRNA syntheta 100.0 1.9E-72 4.1E-77 590.8 19.3 298 95-419 32-352 (524)
21 PRK01406 gltX glutamyl-tRNA sy 100.0 1.1E-71 2.3E-76 613.5 23.2 289 94-419 2-321 (476)
22 PRK14895 gltX glutamyl-tRNA sy 100.0 1.6E-71 3.5E-76 610.5 20.7 298 95-433 3-330 (513)
23 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1E-70 2.3E-75 571.6 24.6 271 95-412 4-298 (299)
24 TIGR00464 gltX_bact glutamyl-t 100.0 1.5E-70 3.2E-75 604.0 22.8 298 96-419 1-312 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 3.2E-69 7E-74 554.6 22.0 261 97-394 1-271 (272)
26 cd00418 GlxRS_core catalytic c 100.0 1.2E-63 2.7E-68 501.5 16.6 222 96-419 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 7.3E-60 1.6E-64 477.3 15.1 223 96-419 1-233 (239)
28 PF03950 tRNA-synt_1c_C: tRNA 100.0 1.8E-44 3.9E-49 350.0 12.8 171 403-594 1-174 (174)
29 COG0215 CysS Cysteinyl-tRNA sy 99.9 1.5E-27 3.2E-32 258.4 14.3 256 102-395 29-315 (464)
30 PF01406 tRNA-synt_1e: tRNA sy 99.9 8.1E-27 1.7E-31 241.8 9.9 250 102-394 15-298 (300)
31 PRK00260 cysS cysteinyl-tRNA s 99.9 1.3E-24 2.8E-29 240.1 19.0 264 94-396 21-314 (463)
32 TIGR00435 cysS cysteinyl-tRNA 99.9 2.1E-24 4.5E-29 238.5 18.3 254 101-396 27-313 (465)
33 PLN02946 cysteine-tRNA ligase 99.9 1.2E-24 2.5E-29 242.9 12.3 253 102-396 87-371 (557)
34 PRK14534 cysS cysteinyl-tRNA s 99.9 4.1E-24 9E-29 235.2 15.2 253 102-395 28-327 (481)
35 PRK12418 cysteinyl-tRNA synthe 99.9 3.2E-24 7E-29 230.8 13.5 256 102-396 16-310 (384)
36 PRK14536 cysS cysteinyl-tRNA s 99.9 1.7E-23 3.7E-28 231.2 16.7 254 102-396 30-328 (490)
37 TIGR03447 mycothiol_MshC cyste 99.9 1.6E-23 3.4E-28 226.8 12.7 260 102-394 43-335 (411)
38 PRK14535 cysS cysteinyl-tRNA s 99.9 8E-23 1.7E-27 230.2 17.9 252 102-395 255-555 (699)
39 PTZ00399 cysteinyl-tRNA-synthe 99.9 6.1E-22 1.3E-26 226.2 14.9 261 102-396 67-363 (651)
40 KOG2007 Cysteinyl-tRNA synthet 99.9 3E-21 6.6E-26 207.8 13.1 250 94-384 52-342 (586)
41 cd00671 ArgRS_core catalytic c 99.8 2.1E-18 4.6E-23 172.2 14.2 184 97-337 2-212 (212)
42 PRK01611 argS arginyl-tRNA syn 99.6 1.4E-15 3.1E-20 170.2 13.6 227 94-394 110-385 (507)
43 PRK11893 methionyl-tRNA synthe 99.6 1.8E-14 3.8E-19 160.9 19.6 276 97-397 4-349 (511)
44 cd00668 Ile_Leu_Val_MetRS_core 99.5 8.6E-13 1.9E-17 139.0 17.9 241 99-379 5-305 (312)
45 cd00802 class_I_aaRS_core cata 99.5 4.8E-14 1E-18 132.1 7.4 133 98-336 1-143 (143)
46 cd00814 MetRS_core catalytic c 99.4 8.4E-12 1.8E-16 132.1 18.4 94 97-190 3-116 (319)
47 TIGR00398 metG methionyl-tRNA 99.4 1E-11 2.2E-16 139.8 18.1 94 97-190 2-115 (530)
48 PF04557 tRNA_synt_1c_R2: Glut 99.4 6.6E-14 1.4E-18 120.8 -0.9 63 1-64 10-74 (84)
49 cd00672 CysRS_core catalytic c 99.3 1.1E-11 2.3E-16 124.6 10.9 163 101-382 26-209 (213)
50 PRK12268 methionyl-tRNA synthe 99.3 9.9E-11 2.2E-15 132.6 16.9 94 97-190 6-120 (556)
51 cd00812 LeuRS_core catalytic c 99.2 9E-11 2E-15 124.1 13.6 93 98-190 4-118 (314)
52 cd00818 IleRS_core catalytic c 99.2 2.9E-10 6.4E-15 121.5 16.3 91 102-192 9-138 (338)
53 cd00674 LysRS_core_class_I cat 99.2 6.8E-10 1.5E-14 119.2 18.9 236 95-378 19-306 (353)
54 PRK12267 methionyl-tRNA synthe 99.2 1.2E-10 2.5E-15 134.5 14.0 94 97-190 7-120 (648)
55 PLN02224 methionine-tRNA ligas 99.2 6.8E-10 1.5E-14 127.0 19.1 95 96-190 71-185 (616)
56 PRK00750 lysK lysyl-tRNA synth 99.2 3.4E-10 7.5E-15 127.1 15.5 231 96-377 24-310 (510)
57 PRK00133 metG methionyl-tRNA s 99.2 1.7E-09 3.6E-14 125.5 21.5 94 97-190 5-118 (673)
58 PRK12451 arginyl-tRNA syntheta 99.1 1.6E-09 3.4E-14 123.2 14.2 89 251-363 294-388 (562)
59 PLN02610 probable methionyl-tR 99.0 1.6E-09 3.5E-14 127.4 14.3 94 97-190 20-134 (801)
60 PF09334 tRNA-synt_1g: tRNA sy 99.0 3.2E-10 6.9E-15 123.6 7.1 276 98-401 3-381 (391)
61 COG0143 MetG Methionyl-tRNA sy 99.0 5.9E-09 1.3E-13 117.7 14.0 283 96-401 7-387 (558)
62 cd00817 ValRS_core catalytic c 98.9 1.2E-08 2.6E-13 110.9 15.0 93 98-190 5-135 (382)
63 COG0018 ArgS Arginyl-tRNA synt 98.9 4.9E-08 1.1E-12 111.0 16.4 237 95-363 117-400 (577)
64 PLN02286 arginine-tRNA ligase 98.8 4.7E-08 1E-12 111.6 15.0 89 251-363 297-395 (576)
65 PRK13208 valS valyl-tRNA synth 98.8 4.7E-07 1E-11 107.2 21.6 94 97-190 40-169 (800)
66 TIGR00456 argS arginyl-tRNA sy 98.8 1.4E-07 3.1E-12 107.5 16.6 221 96-338 113-379 (566)
67 TIGR00467 lysS_arch lysyl-tRNA 98.7 2.1E-07 4.6E-12 104.7 17.1 247 95-398 18-323 (515)
68 cd00806 TrpRS_core catalytic c 98.6 2.1E-07 4.5E-12 97.4 12.0 171 104-337 7-197 (280)
69 TIGR00422 valS valyl-tRNA synt 98.6 1.7E-06 3.6E-11 103.4 20.7 93 98-190 37-167 (861)
70 PF00750 tRNA-synt_1d: tRNA sy 98.6 3.9E-07 8.6E-12 98.2 12.1 46 94-139 19-67 (354)
71 PF01921 tRNA-synt_1f: tRNA sy 98.4 2.1E-06 4.5E-11 92.3 10.9 244 83-376 9-311 (360)
72 KOG0436 Methionyl-tRNA synthet 98.1 2.4E-05 5.1E-10 84.6 12.2 274 104-400 49-397 (578)
73 PRK12285 tryptophanyl-tRNA syn 98.0 0.0001 2.2E-09 80.1 14.8 191 78-337 49-257 (368)
74 TIGR00233 trpS tryptophanyl-tR 98.0 8.3E-05 1.8E-09 79.7 13.2 170 104-338 10-199 (328)
75 PRK00390 leuS leucyl-tRNA synt 97.9 1.7E-05 3.7E-10 94.2 8.2 94 97-190 35-150 (805)
76 COG1384 LysS Lysyl-tRNA synthe 97.9 0.0002 4.3E-09 79.8 13.9 78 287-380 228-310 (521)
77 TIGR00396 leuS_bact leucyl-tRN 97.9 3.9E-05 8.5E-10 91.5 9.1 94 97-190 32-147 (842)
78 COG0180 TrpS Tryptophanyl-tRNA 97.8 0.0001 2.3E-09 78.2 10.0 183 104-353 13-215 (314)
79 PLN02563 aminoacyl-tRNA ligase 97.7 9E-05 2E-09 89.3 9.5 94 97-190 113-229 (963)
80 cd00805 TyrRS_core catalytic c 97.7 0.00065 1.4E-08 70.9 14.0 220 104-399 8-250 (269)
81 TIGR00392 ileS isoleucyl-tRNA 97.7 0.00011 2.4E-09 87.9 8.9 96 97-192 39-173 (861)
82 PRK05729 valS valyl-tRNA synth 97.6 0.00012 2.6E-09 87.9 8.4 89 102-190 44-170 (874)
83 PTZ00419 valyl-tRNA synthetase 97.6 0.00012 2.7E-09 88.8 8.7 94 97-190 63-195 (995)
84 PRK08560 tyrosyl-tRNA syntheta 97.6 0.0011 2.3E-08 71.2 14.7 189 82-336 17-219 (329)
85 PRK12556 tryptophanyl-tRNA syn 97.6 0.00079 1.7E-08 72.4 13.3 179 104-338 11-209 (332)
86 PRK05743 ileS isoleucyl-tRNA s 97.6 0.00019 4.2E-09 86.4 8.8 94 97-190 52-180 (912)
87 PLN02943 aminoacyl-tRNA ligase 97.5 0.00031 6.6E-09 85.1 9.6 94 97-190 91-222 (958)
88 PRK14900 valS valyl-tRNA synth 97.5 0.00019 4.1E-09 87.6 7.9 94 97-190 51-183 (1052)
89 PLN02843 isoleucyl-tRNA synthe 97.5 0.00025 5.4E-09 86.0 8.7 94 97-190 35-164 (974)
90 COG0495 LeuS Leucyl-tRNA synth 97.5 0.00012 2.5E-09 86.3 5.7 92 97-190 37-152 (814)
91 PLN02381 valyl-tRNA synthetase 97.5 0.0003 6.6E-09 85.9 8.7 95 97-191 131-264 (1066)
92 PRK06039 ileS isoleucyl-tRNA s 97.4 0.00038 8.2E-09 84.5 8.8 94 97-190 44-176 (975)
93 PF00133 tRNA-synt_1: tRNA syn 97.4 0.00042 9E-09 80.0 8.7 93 98-190 27-158 (601)
94 PTZ00427 isoleucine-tRNA ligas 97.4 0.00042 9.1E-09 85.3 8.8 91 100-190 108-237 (1205)
95 PRK12282 tryptophanyl-tRNA syn 97.4 0.00076 1.7E-08 72.5 9.4 93 96-198 4-104 (333)
96 TIGR00395 leuS_arch leucyl-tRN 97.3 0.00039 8.5E-09 84.0 7.6 94 97-190 28-167 (938)
97 PLN02486 aminoacyl-tRNA ligase 97.3 0.0053 1.1E-07 67.3 15.2 80 102-181 79-169 (383)
98 PLN02882 aminoacyl-tRNA ligase 97.3 0.00057 1.2E-08 84.1 8.4 89 102-190 46-173 (1159)
99 PRK13804 ileS isoleucyl-tRNA s 97.1 0.0011 2.4E-08 80.4 8.7 94 97-190 57-188 (961)
100 COG0525 ValS Valyl-tRNA synthe 97.1 0.0017 3.6E-08 77.0 9.0 90 101-190 40-167 (877)
101 PTZ00126 tyrosyl-tRNA syntheta 97.1 0.014 3.1E-07 64.0 15.5 91 82-175 53-156 (383)
102 cd00395 Tyr_Trp_RS_core cataly 97.0 0.0046 1E-07 64.8 10.9 174 104-339 7-206 (273)
103 PF00579 tRNA-synt_1b: tRNA sy 96.9 0.002 4.3E-08 67.7 7.4 174 104-338 13-205 (292)
104 PRK13354 tyrosyl-tRNA syntheta 96.9 0.036 7.7E-07 61.4 17.1 51 288-338 186-237 (410)
105 PRK00927 tryptophanyl-tRNA syn 96.8 0.0026 5.7E-08 68.4 7.5 171 104-337 9-199 (333)
106 PRK05912 tyrosyl-tRNA syntheta 96.6 0.051 1.1E-06 60.2 15.8 89 82-174 21-130 (408)
107 KOG0435 Leucyl-tRNA synthetase 96.6 0.0028 6.2E-08 72.3 5.8 97 95-191 58-176 (876)
108 cd02156 nt_trans nucleotidyl t 96.5 0.014 3.1E-07 51.9 8.8 39 99-142 2-40 (105)
109 PLN02959 aminoacyl-tRNA ligase 96.3 0.011 2.3E-07 72.9 8.4 38 96-133 46-86 (1084)
110 KOG0432 Valyl-tRNA synthetase 96.0 0.016 3.6E-07 68.0 7.5 91 101-191 82-211 (995)
111 TIGR00395 leuS_arch leucyl-tRN 95.7 0.023 4.9E-07 69.1 8.0 64 317-396 605-669 (938)
112 COG0008 GlnS Glutamyl- and glu 95.4 0.0087 1.9E-07 67.2 2.3 66 354-419 257-322 (472)
113 PRK12300 leuS leucyl-tRNA synt 94.8 0.066 1.4E-06 64.9 7.8 60 319-394 565-624 (897)
114 PLN02886 aminoacyl-tRNA ligase 94.4 0.093 2E-06 57.7 6.9 93 96-199 48-148 (389)
115 PRK12283 tryptophanyl-tRNA syn 94.0 0.18 3.8E-06 55.7 8.1 67 104-171 10-85 (398)
116 PRK12284 tryptophanyl-tRNA syn 93.8 0.2 4.3E-06 55.8 8.2 88 103-199 9-106 (431)
117 PRK12300 leuS leucyl-tRNA synt 93.3 0.14 3E-06 62.2 6.4 83 109-191 1-129 (897)
118 PLN02943 aminoacyl-tRNA ligase 93.0 0.18 3.8E-06 61.7 6.7 66 318-401 569-635 (958)
119 PRK06039 ileS isoleucyl-tRNA s 92.1 0.21 4.6E-06 61.2 5.9 67 319-401 579-646 (975)
120 PRK05729 valS valyl-tRNA synth 91.5 0.44 9.5E-06 57.7 7.6 67 318-401 506-573 (874)
121 PTZ00348 tyrosyl-tRNA syntheta 91.5 0.96 2.1E-05 53.3 10.0 91 82-173 19-120 (682)
122 PLN02959 aminoacyl-tRNA ligase 90.9 0.63 1.4E-05 57.7 8.2 59 319-393 706-764 (1084)
123 TIGR00392 ileS isoleucyl-tRNA 89.7 0.45 9.7E-06 57.5 5.5 66 319-401 598-664 (861)
124 PRK14900 valS valyl-tRNA synth 89.6 0.78 1.7E-05 56.8 7.5 66 319-401 525-591 (1052)
125 TIGR00234 tyrS tyrosyl-tRNA sy 87.9 2.7 5.9E-05 46.3 9.6 86 83-173 20-124 (377)
126 COG0162 TyrS Tyrosyl-tRNA synt 87.7 3.5 7.6E-05 45.8 10.3 90 81-173 19-125 (401)
127 PLN02882 aminoacyl-tRNA ligase 86.8 1.3 2.8E-05 55.4 7.0 68 313-396 594-664 (1159)
128 PF00133 tRNA-synt_1: tRNA syn 86.5 1.5 3.3E-05 51.0 7.0 76 289-380 515-594 (601)
129 PLN02843 isoleucyl-tRNA synthe 86.4 2 4.3E-05 52.8 8.2 60 317-392 596-664 (974)
130 PRK05743 ileS isoleucyl-tRNA s 86.2 1.9 4.2E-05 52.6 8.0 64 313-393 572-637 (912)
131 PF00749 tRNA-synt_1c: tRNA sy 85.7 0.072 1.6E-06 57.0 -4.0 52 346-397 258-310 (314)
132 PRK13804 ileS isoleucyl-tRNA s 84.1 2.2 4.9E-05 52.4 7.2 59 318-393 616-675 (961)
133 COG0060 IleS Isoleucyl-tRNA sy 82.8 2.4 5.2E-05 51.6 6.5 91 102-192 57-185 (933)
134 PTZ00427 isoleucine-tRNA ligas 81.7 3.2 6.9E-05 52.1 7.3 66 319-400 707-774 (1205)
135 COG0525 ValS Valyl-tRNA synthe 79.9 4.8 0.00011 48.6 7.7 67 311-393 502-571 (877)
136 PRK00390 leuS leucyl-tRNA synt 78.3 5.5 0.00012 48.1 7.6 48 331-394 570-617 (805)
137 TIGR00396 leuS_bact leucyl-tRN 77.4 2.8 6E-05 50.8 4.8 46 331-392 604-649 (842)
138 COG0495 LeuS Leucyl-tRNA synth 74.9 5.4 0.00012 48.0 6.2 82 286-383 524-615 (814)
139 KOG2713 Mitochondrial tryptoph 71.8 7.8 0.00017 41.2 5.7 76 102-178 19-105 (347)
140 PTZ00419 valyl-tRNA synthetase 71.3 7.3 0.00016 48.2 6.3 54 105-161 312-376 (995)
141 PLN02563 aminoacyl-tRNA ligase 70.5 5.3 0.00012 49.1 4.9 50 328-393 720-769 (963)
142 PLN02381 valyl-tRNA synthetase 68.4 10 0.00022 47.2 6.8 28 365-392 710-737 (1066)
143 KOG0437 Leucyl-tRNA synthetase 67.3 9.6 0.00021 45.2 5.7 70 92-163 41-116 (1080)
144 KOG0433 Isoleucyl-tRNA synthet 62.2 26 0.00057 41.7 8.0 108 82-192 45-189 (937)
145 COG0060 IleS Isoleucyl-tRNA sy 44.7 11 0.00024 46.1 1.5 42 322-379 592-634 (933)
146 KOG2145 Cytoplasmic tryptophan 41.3 29 0.00063 37.1 3.7 67 106-172 96-171 (397)
147 KOG0437 Leucyl-tRNA synthetase 40.8 8.8 0.00019 45.5 -0.1 46 323-384 702-747 (1080)
148 KOG1195 Arginyl-tRNA synthetas 40.7 48 0.001 38.0 5.5 30 95-124 110-140 (567)
149 KOG4426 Arginyl-tRNA synthetas 32.3 38 0.00082 38.2 3.0 45 95-139 188-235 (656)
150 COG2344 AT-rich DNA-binding pr 26.8 78 0.0017 32.1 3.9 73 111-187 92-171 (211)
151 cd02168 NMNAT_Nudix Nicotinami 22.0 1.9E+02 0.0042 28.5 5.7 58 96-162 3-66 (181)
152 smart00422 HTH_MERR helix_turn 21.9 75 0.0016 25.4 2.4 24 353-376 46-69 (70)
153 PF08671 SinI: Anti-repressor 20.6 1.3E+02 0.0028 21.5 2.9 21 356-376 8-28 (30)
154 PF10096 DUF2334: Uncharacteri 20.6 2.6E+02 0.0055 28.9 6.5 56 131-187 2-69 (243)
155 KOG3349 Predicted glycosyltran 20.4 56 0.0012 32.0 1.5 20 176-195 117-136 (170)
156 KOG0434 Isoleucyl-tRNA synthet 20.1 2.9E+02 0.0062 33.4 7.2 48 86-133 27-79 (1070)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-183 Score=1459.43 Aligned_cols=587 Identities=59% Similarity=1.000 Sum_probs=551.2
Q ss_pred CccccCCCccccccccchhhhhhhccCCCccccccc-----ccCCCCCCCCccccCCCccCCCCCCCcccccccccCCCc
Q 007060 1 MYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK-----FANDAPVQLPEEDLFPISNFPPPEENYKVHTEIPFSDGS 75 (619)
Q Consensus 1 ~~~~~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (619)
+++|||||||+|++++.|+++++ .++++.+.+.. ++....+++.|+|+. +||+||||+|
T Consensus 169 ~l~LlGpkte~dl~~~~k~~k~~--~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent~----------- 232 (764)
T KOG1148|consen 169 VLELLGPKTEADLEKKKKKKKAE--GEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENTQ----------- 232 (764)
T ss_pred HHHhcCccchhhccccccccccc--ccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCcc-----------
Confidence 47899999999999887765222 22222222111 112345688999999 9999999976
Q ss_pred ceeecCcHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHH
Q 007060 76 VLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155 (619)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL 155 (619)
+|+++|++||++|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||++|.++|+++|.+++
T Consensus 233 -----~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V 307 (764)
T KOG1148|consen 233 -----HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMV 307 (764)
T ss_pred -----chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcc-cCCCCCCCCChHHHHHHHHHHhcccccCCc
Q 007060 156 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK-KMNSPWRDRPIAESLKLFEDMRNGRIEEGK 234 (619)
Q Consensus 156 ~wLGi~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~-~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~ 234 (619)
+|||++|++++|+||||+++|++|.+||++|+||+|||+.|||++.|+. ..+|+||+||+||||++|++|++|++++|+
T Consensus 308 ~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGe 387 (764)
T KOG1148|consen 308 AWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGE 387 (764)
T ss_pred HHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcCh
Confidence 9999999999999999999999999999999999999999999999983 346999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCC
Q 007060 235 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL 314 (619)
Q Consensus 235 ~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~ 314 (619)
++||||+|++++|++|+|+|+||+.+.||||+|++||||||||||||++||+|+|||+|||.||.+++.+|+|||++|++
T Consensus 388 AtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~i 467 (764)
T KOG1148|consen 388 ATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEI 467 (764)
T ss_pred hheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 315 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 315 ~~P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
|+|.||||||||+.|++|||||+.+||++|+|.||||||++||.+|||||++|+||++||+++|+|.++++++...||++
T Consensus 468 Y~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~ 547 (764)
T KOG1148|consen 468 YCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAA 547 (764)
T ss_pred ccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCC
Q 007060 395 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 474 (619)
Q Consensus 395 ~r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 474 (619)
+|++|+.++||.|+|++|+||+|+|+++++.+.+++|+.|+ +|.+|+|.|+|++.||||++||+++++|+|+||+||
T Consensus 548 VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpg 624 (764)
T KOG1148|consen 548 VRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPG 624 (764)
T ss_pred HHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEcccccccCCcchhccCCC
Confidence 99999999999999999999999999999888999999998 899999999999999999999999999999999999
Q ss_pred CEEEEeeee-eEEEEEeEecCCCCCEEEEEEEEcC-CCCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCc-c
Q 007060 475 KSVLLRYAF-PIKCTEVILSDDKETILHIRAEYDP-SKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAEL-D 551 (619)
Q Consensus 475 ~~v~l~~~~-~i~~~~~~~~d~~g~v~~l~~~~~~-~~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~-~ 551 (619)
|+|+|++.+ +|.+..|. +|++|.|++|+++||+ +.++|||++|||||+ +|+.||+|+|++||+++||++. +
T Consensus 625 QpVGLr~~~~vi~~~~vv-kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse-----~Pv~vEvRlye~LFks~NP~d~~e 698 (764)
T KOG1148|consen 625 QPVGLRYAGYVIRVVKVV-KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE-----SPVKVEVRLYEQLFKSENPADLNE 698 (764)
T ss_pred CcceeEeecceEEEEEEe-eCCCCceEEEEEEecccccccCCceeEEeccC-----CCeEeehhHHHHHhccCCccchhH
Confidence 999998885 45555666 8999999999999998 466899999999996 4999999999999999999975 6
Q ss_pred CccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEeeecCCCCCCCCC
Q 007060 552 DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 617 (619)
Q Consensus 552 ~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~ 617 (619)
.||++|||+|+.|+.+|++|..++..+++|+|||||+||||||+||+.++|||||||+||++.+|+
T Consensus 699 ~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 699 VFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPGKLVFNRTVTLKDDSGKK 764 (764)
T ss_pred HHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCceEEEEeEEEeccCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999998774
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=3e-178 Score=1496.45 Aligned_cols=613 Identities=85% Similarity=1.347 Sum_probs=583.4
Q ss_pred CccccCCCccccccccchhhhhhhccCCCcccccccccCCCCCCCCccccCCCccCCCCCCCcccccccccCCCcceeec
Q 007060 1 MYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICC 80 (619)
Q Consensus 1 ~~~~~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (619)
+++||||||++|++|++|++++ ++++++++ ......++|+||++++++.||+||||+++++.+++++|+++.+.
T Consensus 175 ~~~llg~k~~~d~~~~~k~~k~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~~~~~~~~~~~~~~~~~~ 248 (788)
T PLN02859 175 LYELLGEKTAADNEKPVKKKKE-----KPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENFKVHTEVFFSDGSVLRPS 248 (788)
T ss_pred HHHhcCCcchhhhccccccccc-----cccccccc-cccccccccchhhccccccCCCccccccccceeecccccccccc
Confidence 4789999999999866554322 11111111 11234589999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCC
Q 007060 81 NTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 160 (619)
Q Consensus 81 ~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi 160 (619)
|++++|++||++++|+|+|||||||||||||||||||++||+|||++||+|+||||||||+|+.++|+++|+++|+|||+
T Consensus 249 ~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~ 328 (788)
T PLN02859 249 NTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGW 328 (788)
T ss_pred CcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEE
Q 007060 161 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240 (619)
Q Consensus 161 ~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K 240 (619)
+|++++|||+||+.+|++|.+||++|+||+|+||+|+|++.|..+.+|+||+++++|+|.+|++|++|.+.+|++|||||
T Consensus 329 ~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~K 408 (788)
T PLN02859 329 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMK 408 (788)
T ss_pred CCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEE
Q 007060 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 320 (619)
Q Consensus 241 ~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ 320 (619)
+||.++|++|+|+|+||+.+.+||++|++|+||||||||||||||+|||||||||.||++|+++|.||+++|||+.|.+|
T Consensus 409 id~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P~~~ 488 (788)
T PLN02859 409 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVW 488 (788)
T ss_pred ccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCc-chhHhHHHHHHHHHh
Q 007060 321 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIRLDRLEYHIREEL 399 (619)
Q Consensus 321 ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~-~~~~~~Le~~~r~~~ 399 (619)
||+|||++|++||||++.+||++|+|+|||||||+||++||||||+|+||+|||+.+|||++++ .++++.||+++|+.+
T Consensus 489 ~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~l 568 (788)
T PLN02859 489 EYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREEL 568 (788)
T ss_pred eeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred hcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEE
Q 007060 400 NKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLL 479 (619)
Q Consensus 400 ~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l 479 (619)
++.++|+|||+||+||+|+|+|++..+.+++|.||.+|.++++|+|.|+|++.||||++||++.++++|+||+||++|+|
T Consensus 569 ~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~~~rL~pg~~V~L 648 (788)
T PLN02859 569 NKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLL 648 (788)
T ss_pred CCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccccceecCCCCEEEE
Confidence 99999999999999999999998888888999999998899999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEEeEecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCC
Q 007060 480 RYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 559 (619)
Q Consensus 480 ~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~ 559 (619)
+|+|+|+|++++.+|++|+|++|+|+||++...|+|++|||||+++++.++++||+|+||+||++++|++.++|+++|||
T Consensus 649 ~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p~~~~~~~~~iNp 728 (788)
T PLN02859 649 RYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNP 728 (788)
T ss_pred cceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCCcccccHHHhCCC
Confidence 99999999998867889999999999999877899999999998655567899999999999999999988899999999
Q ss_pred CCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEeeecCCCCCCCCCCC
Q 007060 560 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 619 (619)
Q Consensus 560 ~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~~~ 619 (619)
+|+.++.+|++|++++++++|++|||||+||||||+||+++++||||||+||++|+|..|
T Consensus 729 ~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~~~vfNr~v~Lkd~~~k~~~ 788 (788)
T PLN02859 729 QSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788 (788)
T ss_pred CccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCCCeEEEeeeeccccccccCC
Confidence 999999889999999999999999999999999999999999999999999999998764
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-160 Score=1310.89 Aligned_cols=544 Identities=48% Similarity=0.864 Sum_probs=520.8
Q ss_pred CccCCCCCCCcccccccccCCCcceeecCcHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEE
Q 007060 53 ISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCY 132 (619)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~i 132 (619)
.+.||..+++... .|+ .|+|+++++|++.++|+|+|||||||||||||||||+|++||+|||++||+|+
T Consensus 19 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~i 87 (574)
T PTZ00437 19 KRDLSLLQTGRPV-------PGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCY 87 (574)
T ss_pred ccchhhhcccCCC-------ccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE
Confidence 3467777766543 232 68899999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCC
Q 007060 133 LRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 212 (619)
Q Consensus 133 LRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~ 212 (619)
||||||||+|+.++|+++|+++|+|||++||++++||+||+.||++|++||++|+||+|+||+|+|++.|..+.+|+||+
T Consensus 88 LRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~ 167 (574)
T PTZ00437 88 LRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRN 167 (574)
T ss_pred EEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCccee
Q 007060 213 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 292 (619)
Q Consensus 213 ~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHv 292 (619)
+|+||||++|++|++|.+.+|++|||+|+||.++|++|+|+|+||+.+.+||++|++|+||||||||||||||+||||||
T Consensus 168 ~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHv 247 (574)
T PTZ00437 168 RSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYS 247 (574)
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 007060 293 LCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 372 (619)
Q Consensus 293 iRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~ 372 (619)
|||.||.+|++.|.||+++|+|+.|.+|+|+|||++|++||||++.+||++|+|+|||||||+||++||||||+|+||++
T Consensus 248 lct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~ 327 (574)
T PTZ00437 248 LCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINR 327 (574)
T ss_pred eeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccc
Q 007060 373 FVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNV 452 (619)
Q Consensus 373 fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~ 452 (619)
||..+|||++++.++|+.||++||+.+++.++|+|||+||++|+|+|++.. ..+++|+||+ ++++|+|+|+|+++
T Consensus 328 f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~ 402 (574)
T PTZ00437 328 FCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDT 402 (574)
T ss_pred HHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCe
Confidence 999999999999999999999999999999999999999999999998753 5678899888 79999999999999
Q ss_pred cceeccccc-ccCCcCccCcCCCC-EEEEeeeeeEEEEEeEecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCC
Q 007060 453 VYIEHSDFR-MKDSKDYYGLAPGK-SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNP 530 (619)
Q Consensus 453 iyIe~~D~~-~~~~~~~~~l~~g~-~v~l~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~~k~k~~I~Wv~~~~~~~~~ 530 (619)
||||++||+ +.++++|+||+||+ .|+|+++|||+|++++ +|++|+|++++|+++++..+|+|++|||||+ ..+
T Consensus 403 iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~----~~~ 477 (574)
T PTZ00437 403 FYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSA----TAC 477 (574)
T ss_pred EEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeec----CCc
Confidence 999999998 66789999999997 8999999999999998 8889999999999999877889999999997 468
Q ss_pred eeEEEEecccccCCCCCCCccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEeeecCC
Q 007060 531 LRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTL 610 (619)
Q Consensus 531 v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~l 610 (619)
++|+||+||+||++++|+..++|+++|||+|+.+. .|++|+++.++++|++|||||+|||+||++|+++++||||||+|
T Consensus 478 v~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~-~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~~~vfNr~v~L 556 (574)
T PTZ00437 478 TPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGL 556 (574)
T ss_pred eeEEEEeccccccCCCCCccccHhhhCCCCceEEE-EEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCCCEEEEeeeEc
Confidence 99999999999999999988899999999999987 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 007060 611 KDSFPKGG 618 (619)
Q Consensus 611 k~~~~k~~ 618 (619)
|++++|.+
T Consensus 557 kd~~~K~~ 564 (574)
T PTZ00437 557 REDKEKAT 564 (574)
T ss_pred cccccccc
Confidence 99988753
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-157 Score=1288.62 Aligned_cols=526 Identities=54% Similarity=0.925 Sum_probs=504.4
Q ss_pred HHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCC
Q 007060 83 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 83 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 161 (619)
.++++++|+.. .|+|+|||||||||||||||||||++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 56777777764 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcc----cCCCCCCCCChHHHHHHHHHHhcccccCCceE
Q 007060 162 P-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 162 p-d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~----~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
| +.++|||+||+.||++|++||++|+||+|+||+|+|++.|+. +++|+||++|+||+|++|++|++|.+.+|++|
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 9 578999999999999999999999999999999999999974 88999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCC-C
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 315 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~-~ 315 (619)
||+|+||.++|++|+|+|+||+.+.+||++|++|+||||||||||||||+|||||||||.||++|+++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHH
Q 007060 316 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 316 ~P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
.|.+|+|+|||++|++||||++.+||++|.|+|||||||+||++||||||+|+||++||+.+|||++++.++|+.||++|
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCC
Q 007060 396 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 475 (619)
Q Consensus 396 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 475 (619)
|+.+++.+||+|||+||++|+|+|++++..+.+++|+||+ ++++|+|+|+|+++||||++||++.++++|+||+||+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 411 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGK 411 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhccccccccccCCCC
Confidence 9999999999999999999999999887777789999988 7899999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEEEeEecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCC
Q 007060 476 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 548 (619)
Q Consensus 476 ~v~l~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-------~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~ 548 (619)
+|+|+++++|+|++++ +|++|.|++++|+|+++ ..+|+|++|||||+ .++++|+||+|++||++++|+
T Consensus 412 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~----~~~v~~~v~~yd~Lf~~~~p~ 486 (554)
T PRK05347 412 EVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSA----AHAVPAEVRLYDRLFTVPNPA 486 (554)
T ss_pred EEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeec----CCCEeEEEEEeccccCCCCCC
Confidence 9999999999999998 88999999999999876 33688899999997 468999999999999999999
Q ss_pred CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEeeecCCCCCCCCC
Q 007060 549 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 617 (619)
Q Consensus 549 ~~~~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~ 617 (619)
+.++|+++|||+|+.+. .|++|++++++++|++|||||+|||+||++++++++||||||+||++++|.
T Consensus 487 ~~~~~~~~iN~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 487 AGKDFLDFLNPDSLVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAKI 554 (554)
T ss_pred ccccHhHhcCCCceEEE-eEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCCCeEEEeeeecccccCCC
Confidence 88899999999999765 799999999999999999999999999999999999999999999999874
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=2.4e-152 Score=1297.32 Aligned_cols=527 Identities=47% Similarity=0.859 Sum_probs=506.6
Q ss_pred HHHHHHHhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCC
Q 007060 83 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 83 ~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 161 (619)
.+++++||+. +.|+|+|||||||||||||||||+|++||+|||+|||+|+||||||||+|+.++|+++|++||+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 7789999998 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc----ccCCCCCCCCChHHHHHHHHHHhcccccCCceE
Q 007060 162 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 162 pd~-~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
||+ ++|||+||+.||++|++||++|+||+|+||+++|++.|+ .+++|+||++|++|++++|++|++|.+.+|++|
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 986 699999999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCC-C
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 315 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~-~ 315 (619)
||+|+||.++|++|+|||+||+...+||++||+||||||||||||||||+|||||||||.||++|+++|.||+++||+ .
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964 3
Q ss_pred -CCcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 316 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 316 -~P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
.|.+|+|+|||+.|++||||++.+||++|.|+|||||||+||++||||||+|+||++||..+|||+.++.++|+.||++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCC-CCCceEEeccccccceecccccccCCcCccCcCC
Q 007060 395 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-DASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAP 473 (619)
Q Consensus 395 ~r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~ 473 (619)
||+.+++.+||+|||+||++|+|+|++++..+.+++|+||+ + +++|+|+|+|+++||||++||++.++++|+||+|
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~---~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~ 413 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPH---DVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTP 413 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCC---CCccCceEEEEEcCeEEEEhhHhhccccccccccCC
Confidence 99999999999999999999999999887778889999998 5 7999999999999999999999999999999999
Q ss_pred CCEEEEeeeeeEEEEEeEecCCCCCEEEEEEEEcCCC------CCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCC
Q 007060 474 GKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENP 547 (619)
Q Consensus 474 g~~v~l~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~------~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p 547 (619)
|++|+|+++|+|+|++++ +|++|.|++|+|+|++++ .+|+|++|||||+ .++++|+||+|++||++++|
T Consensus 414 g~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~----~~~v~~~vr~Yd~Lf~~~~p 488 (771)
T PRK14703 414 GREVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSA----KHALPAEVRLYDRLFKVPQP 488 (771)
T ss_pred CCEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeec----CCCeeEEEEecccccCCCCC
Confidence 999999999999999999 899999999999998874 3678999999997 46899999999999999999
Q ss_pred C-CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEeeecCCCCCCCCCC
Q 007060 548 A-ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 618 (619)
Q Consensus 548 ~-~~~~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~~v~n~~v~lk~~~~k~~ 618 (619)
+ ..++|+++|||+|+.++ .|++||++.++++|++|||||.|||+||+ +|+++++||||||+||++|+|.+
T Consensus 489 ~~~~~~~~~~lN~~Sl~~~-~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 489 EAADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560 (771)
T ss_pred CccccchHhhcCCCCceeE-ccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeecccCccccccc
Confidence 8 45799999999999998 58999999999999999999999999997 78899999999999999998654
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=5.2e-152 Score=1248.10 Aligned_cols=508 Identities=51% Similarity=0.872 Sum_probs=488.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 175 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~~ 175 (619)
|+|||||||||||||||||||++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++|| .+++||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhc----ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCC
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 251 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~ 251 (619)
|++|++||++|+||+|+||+|+|++.|+ ++++|+||++|+||+|++|++|++|++++|++|||+|+||.++|++|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCC-CCcEEeccccCCCCc
Q 007060 252 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 330 (619)
Q Consensus 252 D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~-~P~~~ef~rLn~~g~ 330 (619)
|+|+||+.+.+||++|++|+||||||||||||||+|||||||||+||++||++|.||+++++++ .|.||+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEe
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 410 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 410 (619)
|||||++.+||++|+|+|||||||+||++||||||+|+||+|||+.||||++++.++++.|++++|+|+++.++|+|||+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred cceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEEe
Q 007060 411 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 490 (619)
Q Consensus 411 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 490 (619)
||+||+|+|++... +..++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||++|+|+++|+|+|+++
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~ 396 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERV 396 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEE
Confidence 99999999997643 3567888887 7899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCce
Q 007060 491 ILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 563 (619)
Q Consensus 491 ~~~d~~g~v~~l~~~~~~~-------~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~ 563 (619)
+ +|++|.|++|+|+|+++ ..+|+|++|||||+ .++++||+|+|++||++++|++.++|++++||+|+.
T Consensus 397 ~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~----~~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~ 471 (522)
T TIGR00440 397 E-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSA----SSKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLV 471 (522)
T ss_pred E-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeec----CCCeeEEEEecccccCCCCCCccccHhhhCCCCceE
Confidence 9 88999999999999875 23788899999997 468999999999999999999889999999999998
Q ss_pred eeceeEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEeeecCCCCCC
Q 007060 564 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSF 614 (619)
Q Consensus 564 ~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~~v~n~~v~lk~~~ 614 (619)
+. .|++|++++++++|++|||||+||||||+ +|+++++||||||+||++|
T Consensus 472 ~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 472 IK-QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522 (522)
T ss_pred EE-EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeeeecCCCC
Confidence 76 69999999999999999999999999995 7889999999999999986
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=8.2e-145 Score=1189.91 Aligned_cols=501 Identities=33% Similarity=0.528 Sum_probs=471.5
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 007060 92 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 171 (619)
Q Consensus 92 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~ 171 (619)
+++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCC
Q 007060 172 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 251 (619)
Q Consensus 172 ~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~ 251 (619)
|+.||++|++||++|+||+|+||+|||++.|+.+++|+||++|++|++++|++|++|.+.+|++++|+|+++.++|.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999999899999999999999999999999998889999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCcc
Q 007060 252 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 331 (619)
Q Consensus 252 D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~k 331 (619)
|||+||+...+||++|++||||||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|+|+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEe-
Q 007060 332 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 410 (619)
Q Consensus 332 LSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~- 410 (619)
||||++.+||++|.|+|||||||+||++||||||+|+||++||+.+|+|++++.++|+.||++||+.+++.+||+|||.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cceeEEEEeCCCccee-ecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEE
Q 007060 411 -NPLKVVITNMESGTIM-HLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 488 (619)
Q Consensus 411 -dp~kl~i~n~~~~~~~-~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~ 488 (619)
||++|+|+|+|.+..+ .+++|+||+ ++++|+|+|+|+++||||++||+ +|+||++|+|++++||+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i~~~ 395 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVIEIS 395 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeEEEE
Confidence 6999999999876422 347899888 79999999999999999999997 4999999999888999999
Q ss_pred EeEecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeecee
Q 007060 489 EVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEA 568 (619)
Q Consensus 489 ~~~~~d~~g~v~~l~~~~~~~~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~~a 568 (619)
+++ +|.+|+++ . +. ..+|+|++|||||+. .+.++|++++|++||++++|++.++|+++|||+|+.+. .|
T Consensus 396 ~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~---~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~-~~ 464 (523)
T PLN03233 396 KID-GDLEGHFI---P--DG-DFKAAKKKISWIADV---SDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAET-DV 464 (523)
T ss_pred EEE-ecCceEEe---e--CC-CCcccccEEEEcCCC---CCccceEEEecccccCCCCCCcccChhhhcCCCceEEE-eE
Confidence 998 77777654 1 12 336788899999852 35789999999999999999988999999999999997 79
Q ss_pred EeccccccCCCCCeEEEEEeeeEEEec-CCCCCc-eEEeeecCCCCCC
Q 007060 569 YAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEK-LVFNRTVTLKDSF 614 (619)
Q Consensus 569 ~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~-~v~n~~v~lk~~~ 614 (619)
++|++++++++|++|||||.|||+||+ ++++++ +||+.|+..|...
T Consensus 465 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~ 512 (523)
T PLN03233 465 IGDAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKA 512 (523)
T ss_pred EEchhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCccc
Confidence 999999999999999999999999997 455555 5999999877543
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-141 Score=1175.84 Aligned_cols=506 Identities=33% Similarity=0.506 Sum_probs=479.0
Q ss_pred hhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCc
Q 007060 91 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTS 169 (619)
Q Consensus 91 ~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qS 169 (619)
.+++|+|+||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||++||+ ++|||
T Consensus 47 ~a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QS 126 (601)
T PTZ00402 47 NAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSS 126 (601)
T ss_pred CCCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeecc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred hhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCC
Q 007060 170 DYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 249 (619)
Q Consensus 170 d~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~ 249 (619)
+||+.||++|++||++|+||+|+||+|+|++.|..+++++||+++++|++++|+.|++|.+.+|.+++|+|++|.++|.+
T Consensus 127 dr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~ 206 (601)
T PTZ00402 127 DYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKA 206 (601)
T ss_pred ccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCC
Confidence 99999999999999999999999999999999888999999999999999999999999888889999999999999999
Q ss_pred CCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCC
Q 007060 250 MYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN 329 (619)
Q Consensus 250 ~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g 329 (619)
|+|+|+||+...+||++|++|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|||++||++|
T Consensus 207 ~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g 286 (601)
T PTZ00402 207 MRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEY 286 (601)
T ss_pred ccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeE
Q 007060 330 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVV 409 (619)
Q Consensus 330 ~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av 409 (619)
++||||++.++|++|+|.||||||++||++||||||+|+||++||..+|+|++++.++|+.||++||+++++.+||+|||
T Consensus 287 ~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV 366 (601)
T PTZ00402 287 SVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVV 366 (601)
T ss_pred CcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEE
Q 007060 410 LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTE 489 (619)
Q Consensus 410 ~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~ 489 (619)
+||+||+|+|.+.+..+.+++|+||+ ++++|+|+++|+++||||++||+ +|+||++|+|+..+|+.|.+
T Consensus 367 ~~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~i~~ 435 (601)
T PTZ00402 367 SNTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAYIKN 435 (601)
T ss_pred cCCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEEEEE
Confidence 99999999999877666778899888 89999999999999999999997 59999999888778888888
Q ss_pred eEecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeecee
Q 007060 490 VILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEA 568 (619)
Q Consensus 490 ~~~~d~~g~v~~l~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~~a 568 (619)
+..++++|+|++++|++++. ..+|+|++|||||+. .+.+++++|+||+||++++|++.++|++.|||+|+.+. .|
T Consensus 436 ~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~---~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~-~~ 511 (601)
T PTZ00402 436 IRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPES---PKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQ-EV 511 (601)
T ss_pred EEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCC---CCcceEEEEecccccCCCCCCccccHHHhcCCCChheE-EE
Confidence 87556789999999999876 347889999999973 35788999999999999999988899999999999985 79
Q ss_pred EeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEeeecCCCCC
Q 007060 569 YAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDS 613 (619)
Q Consensus 569 ~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~ 613 (619)
++|++++++++|++|||||+|||+||+++.+ .||..|++.|..
T Consensus 512 ~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~vl~~ipdg~~~ 554 (601)
T PTZ00402 512 YGEEALSVLKKGDIIQLERRGYYIVDDVTPK--KVLIAIPDGREK 554 (601)
T ss_pred EEchhHhhCCCCCEEeEEEeEEEEEecCCCC--eEEEECCCCccc
Confidence 9999999999999999999999999985433 389999987765
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=4.8e-139 Score=1189.94 Aligned_cols=502 Identities=31% Similarity=0.532 Sum_probs=477.6
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 007060 93 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 172 (619)
Q Consensus 93 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 172 (619)
.+|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||++||+++|||+||
T Consensus 210 ~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~ 289 (722)
T PLN02907 210 EEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYF 289 (722)
T ss_pred CCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCc
Q 007060 173 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 252 (619)
Q Consensus 173 ~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D 252 (619)
+.||++|++||++|+||+|+|+++++++.|..+|+|+||++|++|++++|++|++|.+.++++|||+|+||.++|++|+|
T Consensus 290 ~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D 369 (722)
T PLN02907 290 PQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRD 369 (722)
T ss_pred HHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCccc
Q 007060 253 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 332 (619)
Q Consensus 253 ~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~kL 332 (619)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|+|+|||++|++|
T Consensus 370 ~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~l 449 (722)
T PLN02907 370 PVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLL 449 (722)
T ss_pred CEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEecc
Q 007060 333 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 412 (619)
Q Consensus 333 SKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp 412 (619)
|||++.+||++|+|+|||||||+|+++||||||+|+||++||..+|+|++++.++|++|+++||+++++.+||+|+|+||
T Consensus 450 SKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p 529 (722)
T PLN02907 450 SKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKE 529 (722)
T ss_pred cccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --eeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEEe
Q 007060 413 --LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 490 (619)
Q Consensus 413 --~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 490 (619)
++|+|+|+|+. ...+++|+||+ ++++|+|+|+|+++||||++||+. |+||++|+|++.+|+.|+++
T Consensus 530 ~~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~~v~L~~~~~~~i~~~ 597 (722)
T PLN02907 530 GRVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGEEVTLMDWGNAIIKEI 597 (722)
T ss_pred CEEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCCEEEEcccCCEEEEEE
Confidence 78889998864 45678888887 799999999999999999999975 89999999988899999999
Q ss_pred EecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeeceeE
Q 007060 491 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 569 (619)
Q Consensus 491 ~~~d~~g~v~~l~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~~a~ 569 (619)
+ +|++|+|++++|+|+++ ..+|+|++|||||+. ...++|++|+||+||++++|+++++|+++|||+|+.+. .|+
T Consensus 598 ~-~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~---~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~-~~~ 672 (722)
T PLN02907 598 T-KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDT---NELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKET-AAL 672 (722)
T ss_pred E-ECCCCcEEEEEEEEccccCCCcCCCeEEEecCC---CCceEEEEEccccccccCCCccccchhHhcCCCceeEE-EEE
Confidence 8 88999999999999887 457888999999972 25899999999999999999988999999999999997 699
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecC-CCCCc-eEEeeecCCC
Q 007060 570 AEPSLHSAAVGDRFQFERLGYFAVDKD-STPEK-LVFNRTVTLK 611 (619)
Q Consensus 570 ~e~~~~~~~~~~~~QfeR~Gyf~vD~~-~~~~~-~v~n~~v~lk 611 (619)
+||++.++++|++|||||+|||+||+. +++++ +||-.|++-|
T Consensus 673 ~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~~~ 716 (722)
T PLN02907 673 GDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716 (722)
T ss_pred EcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCCCC
Confidence 999999999999999999999999974 44455 5887777744
No 10
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-129 Score=1038.75 Aligned_cols=504 Identities=35% Similarity=0.592 Sum_probs=472.5
Q ss_pred hhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCch
Q 007060 91 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSD 170 (619)
Q Consensus 91 ~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd 170 (619)
.+..|+|+|||||+|+||||||||||||+|++||..|+|++|+|||||||++|..+|++.|++||..|||+||.++|+||
T Consensus 195 ~ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSD 274 (712)
T KOG1147|consen 195 GAEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSD 274 (712)
T ss_pred ccccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCC
Q 007060 171 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 250 (619)
Q Consensus 171 ~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~ 250 (619)
||+.+++++++||++|+||+++...|+|+..|+.+.+|.||++|+||||++|++|..|....-.+|+|+|+||+++|.+|
T Consensus 275 yF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaM 354 (712)
T KOG1147|consen 275 YFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAM 354 (712)
T ss_pred hHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999998655589999999999999999
Q ss_pred CceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCc
Q 007060 251 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 330 (619)
Q Consensus 251 ~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~ 330 (619)
||||+|||...||||||++|++||||||||+|.|++|||||.||+.|++++.++|+|++++||+++|..|+|+|||+.+|
T Consensus 355 RDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nT 434 (712)
T KOG1147|consen 355 RDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNT 434 (712)
T ss_pred cCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEe
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 410 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 410 (619)
+|||||+.++|++|+|+|||||||+|++|.+|||++.|+|++|++.+|.|++..+++|+++|++|++.+|+.+||+.||.
T Consensus 435 vLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~ 514 (712)
T KOG1147|consen 435 VLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVV 514 (712)
T ss_pred hhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccee--EEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEE-EEeeeeeEEE
Q 007060 411 NPLK--VVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKC 487 (619)
Q Consensus 411 dp~k--l~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v-~l~~~~~i~~ 487 (619)
.+.. +.++|.|.++..+ . .|+|+||+++|++.+.|++.||||+.|++. |..|++| +|.| ||+.|
T Consensus 515 ~~~~V~v~i~~~~~~~~~~-~---~PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnW-GN~~i 581 (712)
T KOG1147|consen 515 KEDRVEVTITNGPQEEYIE-V---SPKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNW-GNAII 581 (712)
T ss_pred cCceEEEecCCCCCcchhh-c---cccCCCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEec-cceee
Confidence 6644 4555655543222 2 355556999999999999999999999986 8999999 7777 89999
Q ss_pred EEeEecCCCCCEEEEEEEEcCCC-CCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeec
Q 007060 488 TEVILSDDKETILHIRAEYDPSK-KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 566 (619)
Q Consensus 488 ~~~~~~d~~g~v~~l~~~~~~~~-~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~ 566 (619)
+++. +|++|+||.+.+++++++ .||+|.+++||++. ..++++++..||+|++++..+++++|.+.+||+|....
T Consensus 582 ~ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt---~~~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~- 656 (712)
T KOG1147|consen 582 KKIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADT---NDSVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKET- 656 (712)
T ss_pred EEee-ccCCceEEEEEEEeccCCccccccceeEEeccC---CCccceEEeechhhcchhhcccchhHHHhcCCCccccc-
Confidence 9998 899999999999998874 47888999999984 57899999999999999999999999999999999875
Q ss_pred eeEeccccccCCCCCeEEEEEeeeEEEecC-C-CCCceEEeeecCCCC
Q 007060 567 EAYAEPSLHSAAVGDRFQFERLGYFAVDKD-S-TPEKLVFNRTVTLKD 612 (619)
Q Consensus 567 ~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~-~-~~~~~v~n~~v~lk~ 612 (619)
.+++|++++++++||+|||||.|||+||.. + .+..+||+.|+.-|.
T Consensus 657 ~~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t 704 (712)
T KOG1147|consen 657 LMLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT 704 (712)
T ss_pred hhccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence 699999999999999999999999999973 3 345799999998775
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-125 Score=1048.38 Aligned_cols=453 Identities=32% Similarity=0.524 Sum_probs=428.6
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc--hhchHHHHHHHHHHHHHcCCCCCCcCCCch
Q 007060 93 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSD 170 (619)
Q Consensus 93 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp--~re~~e~~~~I~edL~wLGi~pd~~~~qSd 170 (619)
.+|+|+|||||||||||||||||||++||+|||+|||+|+|||||||| .|+.++|+++|++||+|||++||++++||+
T Consensus 98 e~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSd 177 (567)
T PRK04156 98 EKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSD 177 (567)
T ss_pred CCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCccc
Confidence 378899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCC
Q 007060 171 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 250 (619)
Q Consensus 171 ~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~ 250 (619)
||+.||++|++||++|+||+|+||++++++.|..+++|+||++++++++++|++|++|.+.+|++|||+|+|+.++|++|
T Consensus 178 r~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~ 257 (567)
T PRK04156 178 RLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSV 257 (567)
T ss_pred CHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCc
Q 007060 251 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 330 (619)
Q Consensus 251 ~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~ 330 (619)
+|||+||+...+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++|||..|.++||++|+++|+
T Consensus 258 rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~ 337 (567)
T PRK04156 258 RDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGF 337 (567)
T ss_pred cccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEe
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 410 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 410 (619)
|||||++.++|++|.|+||||||++||++||++||+|+||++||+.+|||+++..++|+.|+++||+.+++.++|+|+|.
T Consensus 338 kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~ 417 (567)
T PRK04156 338 VLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVR 417 (567)
T ss_pred eeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEEe
Q 007060 411 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 490 (619)
Q Consensus 411 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 490 (619)
||++|+|+|.+. ..+++|+||+ ++++|+|+|+|++.||||++||++ + |++|||+++|||+|+++
T Consensus 418 ~pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~--------~--g~~vrL~~~~nv~~~~~ 481 (567)
T PRK04156 418 DPVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEA--------E--GKMVRLMDLFNVEITGV 481 (567)
T ss_pred CceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhh--------c--CCEEEeeeEEEEEEEEE
Confidence 999999999643 4678899998 799999999999999999999986 2 99999999999999986
Q ss_pred EecCCCCCEEEEEEEEcCC---CCCCCC-eeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeec
Q 007060 491 ILSDDKETILHIRAEYDPS---KKTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 566 (619)
Q Consensus 491 ~~~d~~g~v~~l~~~~~~~---~~~k~k-~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~ 566 (619)
. +++|+|+++ ..+|+| ++|||||+ .++++|+|+.+ +. .+ .
T Consensus 482 ~---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~----~~~v~~~v~~~---------~~-------------~~-~ 525 (567)
T PRK04156 482 S---------VDKARYHSDDLEEARKNKAPIIQWVPE----DESVPVRVLKP---------DG-------------GD-I 525 (567)
T ss_pred E---------EEEEEEcCCccccccccCCCEEEEccC----CCCeeEEEECC---------Cc-------------eE-E
Confidence 4 478899875 346676 59999997 46899999862 21 23 3
Q ss_pred eeEeccccccCCCCCeEEEEEeeeEEEecCC
Q 007060 567 EAYAEPSLHSAAVGDRFQFERLGYFAVDKDS 597 (619)
Q Consensus 567 ~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~ 597 (619)
.|++|+++.++++|++|||||+|||+||+..
T Consensus 526 ~g~~E~~~~~~~~~~~~QfeR~Gf~~~D~~~ 556 (567)
T PRK04156 526 EGLAEPDVADLEVDDIVQFERFGFVRIDSVE 556 (567)
T ss_pred EEEEchhHhhCCCCCEEEEEEeEEEEEecCC
Confidence 6999999999999999999999999999864
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=4.1e-125 Score=1043.72 Aligned_cols=465 Identities=30% Similarity=0.511 Sum_probs=427.6
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 007060 93 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 172 (619)
Q Consensus 93 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 172 (619)
..|+|||||||||||||||||||||++||+|||+|||+|+||||||||+|+.++|+++|+++|+|||+.||++++||+||
T Consensus 90 ~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~ 169 (560)
T TIGR00463 90 KMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRI 169 (560)
T ss_pred cCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCc
Q 007060 173 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 252 (619)
Q Consensus 173 ~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D 252 (619)
+.||++|++||++|+||+|+||+++|++.|..+++|+||++|++|++++|++|++|.+.+|++|||+|+|+.++|++|+|
T Consensus 170 ~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD 249 (560)
T TIGR00463 170 EEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRD 249 (560)
T ss_pred HHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccC
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCC-cc
Q 007060 253 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN-TV 331 (619)
Q Consensus 253 ~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g-~k 331 (619)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.+++.+|||..|.++||+++..++ .+
T Consensus 250 ~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~k 329 (560)
T TIGR00463 250 WVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRT 329 (560)
T ss_pred cEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876654 37
Q ss_pred ccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEec
Q 007060 332 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 411 (619)
Q Consensus 332 LSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~d 411 (619)
||||.....+.+|.|+||||||++||++|||||++|+||++||..+|||++++.++|+.||++||+.+++.+||+|||.|
T Consensus 330 Lskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~ 409 (560)
T TIGR00463 330 LSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWN 409 (560)
T ss_pred ecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcC
Confidence 77666555555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEEeE
Q 007060 412 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 491 (619)
Q Consensus 412 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 491 (619)
|++|+|+|+|.. ...++|+||+ ++++|+|+|+|+++||||++||++ ++|++|+|+++|||+|+++.
T Consensus 410 p~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~~~~~~ 475 (560)
T TIGR00463 410 PVKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVIITKKN 475 (560)
T ss_pred CcEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEEEEEEe
Confidence 999999998743 3457888887 899999999999999999999974 59999999999999999986
Q ss_pred ecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceeeceeEe
Q 007060 492 LSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 570 (619)
Q Consensus 492 ~~d~~g~v~~l~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~~~a~~ 570 (619)
++ |.+ .+..+.+ ..+|++++|||||+ .+.++|+++.||+|++ .|++
T Consensus 476 -~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~----~~~v~~~~~~~d~l~~-----------------------~~~~ 522 (560)
T TIGR00463 476 -DD--GSM---YHSLNLEGARKKGKHIIHWLPD----KDAVKVKVIMPDHLIT-----------------------EGRL 522 (560)
T ss_pred -CC--CcE---EeccccccccccCCCEEEECcC----CCceEEEEEcCccccc-----------------------cCcc
Confidence 43 432 2444443 34678899999997 5689999999988742 4788
Q ss_pred ccccccCCCCCeEEEEEeeeEEEecCCCC-CceEE
Q 007060 571 EPSLHSAAVGDRFQFERLGYFAVDKDSTP-EKLVF 604 (619)
Q Consensus 571 e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~-~~~v~ 604 (619)
|+++...++|++|||||+|||+||+...+ ...||
T Consensus 523 E~~~~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 523 EEDASFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred CcchhhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 99988899999999999999999997544 44677
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-95 Score=791.98 Aligned_cols=447 Identities=34% Similarity=0.493 Sum_probs=381.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 175 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~~ 175 (619)
|+||||||||||||||||||||+||+|||+|||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhc---c-cC-C-CCCCCCChHHHHHHHHHHhc-ccccCCceEEEEEecCCCCCC
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYRE---K-KM-N-SPWRDRPIAESLKLFEDMRN-GRIEEGKATLRMKQDMQNDNF 248 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R~---~-~~-~-~~~R~~s~ee~l~~fe~M~~-G~~~~g~~~lR~K~d~~~~n~ 248 (619)
+++|++||++|+||+|+||+|||++.|. . +. | +++|+ +++|..|+.|.. |. ++++|+|+|+|+.++++
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~--~~~~viR~k~~~~~~~~ 164 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE--GGPAVVRLKIPMAHPGP 164 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc--CCCeEEEEeCCCCCCCC
Confidence 9999999999999999999988877765 1 11 2 55555 778888899987 44 67899999999877777
Q ss_pred CCCceEEEEEecCC-CCC-CCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-
Q 007060 249 NMYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 325 (619)
Q Consensus 249 ~~~D~V~~R~~~~~-h~~-~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL- 325 (619)
.|+|+|.+|+.+.+ |+. ++.+|+||||||||||||||+|||||||||+||++||++|.||+++|||..|.++||+++
T Consensus 165 ~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~ 244 (472)
T COG0008 165 VFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLL 244 (472)
T ss_pred ccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeee
Confidence 99999999999988 988 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCc
Q 007060 326 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 405 (619)
Q Consensus 326 n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 405 (619)
+.+|+|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+....+..++.++++.++..++|
T Consensus 245 ~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~r 324 (472)
T COG0008 245 NEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPR 324 (472)
T ss_pred cCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHH
Confidence 55667999999976666668999999999999999999999999999999999999998899999999999999999999
Q ss_pred eeeEecceeEEEEeCCC-cceeecccccCCCCCCCCCCceEEecccc--ccceecccccccCCcCccCcCCCCEEEEeee
Q 007060 406 TMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 482 (619)
Q Consensus 406 ~~av~dp~kl~i~n~~~-~~~~~~~~p~~p~~~~~~~~G~r~v~~~~--~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~ 482 (619)
+|.+ +|+++.+.+++. .......+|+ ++++|.+.+++.+ .++|++.|+.. +.++++++++..
T Consensus 325 y~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~--------~~~~~~~~~~~l 389 (472)
T COG0008 325 YMRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF--------FEDKEEVRLKRL 389 (472)
T ss_pred HHHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH--------hcchHHHHHHhh
Confidence 9999 999999999764 1222333333 4789999999999 99999999865 334467766555
Q ss_pred eeEEEEEeEecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCc
Q 007060 483 FPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSK 562 (619)
Q Consensus 483 ~~i~~~~~~~~d~~g~v~~l~~~~~~~~~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~ 562 (619)
.++.+.++..+...+.+.. ...+..++|||++. . .+|..+.| .+++.+.
T Consensus 390 ~~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~----~----------~~~~vk~~--------~~~~plr 438 (472)
T COG0008 390 ANVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV----A----------RLFGVKGP--------KLFPPLR 438 (472)
T ss_pred cchHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH----H----------HHhCCCCc--------ccchhhH
Confidence 5553333321222332211 12345699999872 1 45555555 4788888
Q ss_pred eeeceeEeccccccCCCCC--eEEEEEeeeEEEe
Q 007060 563 VVIPEAYAEPSLHSAAVGD--RFQFERLGYFAVD 594 (619)
Q Consensus 563 ~~~~~a~~e~~~~~~~~~~--~~QfeR~Gyf~vD 594 (619)
.+.++++++|.+.+..... .+||+|+|||++|
T Consensus 439 ~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 439 VALTGGYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HHhcCCccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 8888899999997665544 4999999999875
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=1.4e-76 Score=651.38 Aligned_cols=309 Identities=22% Similarity=0.324 Sum_probs=268.8
Q ss_pred HhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC----
Q 007060 89 HLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---- 164 (619)
Q Consensus 89 ~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---- 164 (619)
|.++..|+|||||||||||+||||||||||+||+|||++||+|||||||||++|+.++|+++|+++|+||||+||+
T Consensus 38 ~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~ 117 (535)
T PLN02627 38 AGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDV 117 (535)
T ss_pred cccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCccc
Confidence 4455678899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -----cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhccccc
Q 007060 165 -----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIE 231 (619)
Q Consensus 165 -----~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~ 231 (619)
+|+||+|++.|+++|++|+++|+||+|+||++++++.|+ +.|++.||+++.+++.+.+.. |.
T Consensus 118 gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~---g~-- 192 (535)
T PLN02627 118 GGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAK---GT-- 192 (535)
T ss_pred CCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhC---CC--
Confidence 489999999999999999999999999999999988774 468899999999987654332 22
Q ss_pred CCceEEEEEecC--------------CCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccc
Q 007060 232 EGKATLRMKQDM--------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLE 297 (619)
Q Consensus 232 ~g~~~lR~K~d~--------------~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E 297 (619)
++++|+|++. ...+..+.|+|++|. + ++||||||||||||+|||||||||+|
T Consensus 193 --~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~-------D-----G~PtY~fA~vVDD~~mgITHViRG~D 258 (535)
T PLN02627 193 --PYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRS-------N-----GQPVYNFCVAVDDATMGITHVIRAEE 258 (535)
T ss_pred --CceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEec-------C-----CCccccccceecccccCCcEEEechh
Confidence 4678887642 223345566666665 3 49999999999999999999999999
Q ss_pred cccchHHHHHHHHHhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHH
Q 007060 298 FETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 376 (619)
Q Consensus 298 ~~~~~~~q~~l~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~ 376 (619)
|++||++|.+|+++|||..|.++|++. ++.+|+|||||++. .+|..||++||+|+||+||++.
T Consensus 259 ~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 259 HLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred hhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999999888887 58899999999976 6899999999999999999999
Q ss_pred cCccCCCcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe------CCCcceeecccccC
Q 007060 377 IGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 433 (619)
Q Consensus 377 lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~~ 433 (619)
|||+..+. -++.+++++++.|....+++++++||+.||.|.| ++.+++.....|+.
T Consensus 323 LGws~~~~-~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l 384 (535)
T PLN02627 323 LGWNDGTE-NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERW 384 (535)
T ss_pred hCCCCCCC-CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99997653 3567889999999999999999999999999887 45544444344433
No 15
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=9.5e-76 Score=590.11 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=231.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 175 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ 175 (619)
+|+|||||||||+|||||+|+||+||++||++||+|+||||||||+|+.++|+++|+++|+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEE
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 255 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~ 255 (619)
+++|++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999998
Q ss_pred EEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCcccccc
Q 007060 256 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 335 (619)
Q Consensus 256 ~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~kLSKR 335 (619)
|+++|++|+++|||||||||||++|||||||||+||+++|++|.||+++||++.|.+|+|+|||.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 2334567778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCc
Q 007060 336 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 405 (619)
Q Consensus 336 k~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 405 (619)
++.++|++|.|.||||||++|+.+|+++|++|+||++||+.+|||+++..+++++|+++||+.+++.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.6e-76 Score=622.06 Aligned_cols=306 Identities=30% Similarity=0.413 Sum_probs=267.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 174 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~ 174 (619)
+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++|| .+++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhcc--cCCCCCCCCChHHHHHHH-HHHhcccccCCceEEEEEecCCCCCCCCC
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 251 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~~--~~~~~~R~~s~ee~l~~f-e~M~~G~~~~g~~~lR~K~d~~~~n~~~~ 251 (619)
|+++|++|+++|+||+|+||+++|++.|+. +..++++....+.++.++ ++|++|...++++++|+|+++... ..++
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999875 667789999999999999 889999888889999999998755 7899
Q ss_pred ceEEEEEecCC---CCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEecc-ccCC
Q 007060 252 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS-RLNV 327 (619)
Q Consensus 252 D~V~~R~~~~~---h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~-rLn~ 327 (619)
|+|.+++...+ |+..+.+++|+|||||||||||++|||||||||.||+++|++|.||+++|||..|.+.|.+ .+|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998776 6666778899999999999999999999999999999999999999999999988877754 6899
Q ss_pred CCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCcee
Q 007060 328 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 407 (619)
Q Consensus 328 ~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~ 407 (619)
+|+|||||++..+ ..+..+++.|++|+|+.+||..+||+.... .++..++++++.|.....++..
T Consensus 240 ~g~kLSKR~~~~~--------------i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKS--------------IELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHB--------------HHHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhcccc--------------ccccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHHHhhHhhccCch
Confidence 9999999999842 248899999999999999999999997654 6788889999999888899999
Q ss_pred eEecceeEEE
Q 007060 408 VVLNPLKVVI 417 (619)
Q Consensus 408 av~dp~kl~i 417 (619)
++||..||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999987743
No 17
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-75 Score=633.16 Aligned_cols=289 Identities=21% Similarity=0.283 Sum_probs=261.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHH
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 177 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ye 177 (619)
+||||||||||||||||||||+||+|||++||+|+|||||||++|+.++|+++|+++|+|||++||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCC
Q 007060 178 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 249 (619)
Q Consensus 178 ~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~ 249 (619)
+|++||++|+||+|+||++++++.|+ ++|++.||+++.+|.+ . .++++++|+|++. +...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p~--~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKPN--HTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcCC--Ccee
Confidence 99999999999999999999988764 4688999999988752 1 2347999999873 5667
Q ss_pred CCceEEEEEecCCCCCCCCcce-----ecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCC-cEEecc
Q 007060 250 MYDLIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 323 (619)
Q Consensus 250 ~~D~V~~R~~~~~h~~~g~~w~-----i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P-~~~ef~ 323 (619)
+.|.|.+++...++ +.++|+ |+||||||||||||+|||||||||+||++|||+|.+|+++|||..| .+.|++
T Consensus 149 f~D~v~G~i~~~~~--~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPD--EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEeccc--cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 78888888876643 334553 6899999999999999999999999999999999999999999864 777777
Q ss_pred -ccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcC
Q 007060 324 -RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 402 (619)
Q Consensus 324 -rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~ 402 (619)
.+|.+|+|||||++. .+|.+||++||+|+||+||++.+||+... ++..+++++..|....
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 479999999999986 68999999999999999999999998764 5667789999999999
Q ss_pred CCceeeEecceeEEEEe
Q 007060 403 APRTMVVLNPLKVVITN 419 (619)
Q Consensus 403 ~~R~~av~dp~kl~i~n 419 (619)
+++..++||+.||.|.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999999887
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.7e-74 Score=623.96 Aligned_cols=286 Identities=27% Similarity=0.348 Sum_probs=258.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 175 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ 175 (619)
+|||||||||||+||||||||||+||+|||++||+|||||||||++|..+++++.|+++|+|||++||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCC-ceEEEEEec----
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQD---- 242 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~~lR~K~d---- 242 (619)
.+++++|+++|+||+|+||++++++.|+ +.|++.||+++.++..+. ..+| .+++|+|++
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~--------~~~g~~~~iR~k~~~~~~ 153 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL--------EAEGRKPHWRFKLDDEPI 153 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH--------HhcCCCceEEEecCCCce
Confidence 9999999999999999999999988774 368889999998876532 1223 478898863
Q ss_pred ---------CCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC
Q 007060 243 ---------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 313 (619)
Q Consensus 243 ---------~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg 313 (619)
+...+..+.|+|++|. + |+||||||||||||+|||||||||+||++|||+|.||+++||
T Consensus 154 ~~~D~i~G~~~~~~~~~~D~Vi~R~-------d-----g~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg 221 (445)
T PRK12558 154 SWDDLIRGEQSIDAASLSDPVLIRA-------D-----GSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG 221 (445)
T ss_pred EEEEEeeeEeecccccCCCeEEEec-------C-----CCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC
Confidence 2223456677777776 4 489999999999999999999999999999999999999999
Q ss_pred CCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHH
Q 007060 314 LYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 392 (619)
Q Consensus 314 ~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le 392 (619)
|..|.++|.+. ++.+|+|||||++. .||.+||++||+|+||+||++.||||.++. ++.+++
T Consensus 222 ~~~P~f~H~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~ 283 (445)
T PRK12558 222 AKPPVFAHLSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSME 283 (445)
T ss_pred CCCCeEEEcccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHH
Confidence 99998888886 47899999999975 699999999999999999999999998764 566889
Q ss_pred HHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 393 YHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 393 ~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
+++..|....+++++++||+.||.|.|
T Consensus 284 eli~~F~l~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 284 ELAESFDLSSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred HHHHhCCHhhCCCccccCCHHHHHHHH
Confidence 999999999999999999999999887
No 19
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.1e-72 Score=569.38 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=230.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchh--chHHHHHHHHHHHHHcCCCCCCcCCCchhHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 173 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r--e~~e~~~~I~edL~wLGi~pd~~~~qSd~~~ 173 (619)
+|+|||||||||+|||||||+|++||++||+++|+|+|||||||++| +.+++++.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCce
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 253 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~ 253 (619)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCCcccc
Q 007060 254 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 333 (619)
Q Consensus 254 V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g~kLS 333 (619)
|++.|++|+++|||||||||||++|||||||||+||+++|++|.||+++||+..|.++|+++++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 23345677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCc
Q 007060 334 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 405 (619)
Q Consensus 334 KRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 405 (619)
||++.++|++|.|.||||||++||++||++|++|+||++|+..+|||.+++.+++++|+++||+.+++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 20
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-72 Score=590.76 Aligned_cols=298 Identities=21% Similarity=0.318 Sum_probs=269.7
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC---------c
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 165 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------~ 165 (619)
-.|||||||||||+||||.+|||++||+|||++||+|||||||||.+|..++..++|.++|+|+||.||+ +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 3599999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCC-ceE
Q 007060 166 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 236 (619)
Q Consensus 166 ~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~~ 236 (619)
|.||+|.+.|.++|+.||+.|+||+||||++++...|. ++|+..||++|.+|... | .+.| ++|
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~----lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K----LAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H----HhcCCCee
Confidence 89999999999999999999999999999999988876 56899999999987643 2 2334 699
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCc----ceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHh
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 312 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~----w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aL 312 (619)
+|||.+- .++.+.|.|.+.+......+.||. -+++||||||||||||+|||||||||+||+.+|++|..||+||
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999864 367789999998876665555663 4789999999999999999999999999999999999999999
Q ss_pred CCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHH
Q 007060 313 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 391 (619)
Q Consensus 313 g~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~L 391 (619)
||.+|.+.|.+. +|.+|+|||||++. .+|..|+++||.|+||.|||+.+||+..... +...|
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999997444443 58999999999997 6899999999999999999999999988764 88899
Q ss_pred HHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 392 EYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 392 e~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
++++.+|....+.+..+++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999998877
No 21
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-71 Score=613.52 Aligned_cols=289 Identities=26% Similarity=0.338 Sum_probs=259.0
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCc--------
Q 007060 94 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 165 (619)
Q Consensus 94 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~-------- 165 (619)
.+.|||||||||||+||||||||||+||+|||++||+|||||||||++|+.++|+++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEE
Q 007060 166 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 237 (619)
Q Consensus 166 ~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~l 237 (619)
|+||+|++.|+++|++||++|+||+|+||+||+++.|+ +.|+++||+++.+|..+ .|.+|. ++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g~----~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAGE----PPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCCC----CeeE
Confidence 99999999999999999999999999999999998874 46899999999987654 233332 6899
Q ss_pred EEEecCC--------------CCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchH
Q 007060 238 RMKQDMQ--------------NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 303 (619)
Q Consensus 238 R~K~d~~--------------~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~ 303 (619)
|+|++.. ..+..+.|+|+.|. + |+||||||++||||+|||||||||+||+++++
T Consensus 155 R~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~Rs-------D-----G~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~ 222 (476)
T PRK01406 155 RFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRS-------D-----GTPTYNFAVVVDDHLMGITHVIRGEDHLSNTP 222 (476)
T ss_pred EEEcCCCCceEEEEeccceEEeccccCCCcEEEec-------C-----CCccccchHHHHHHHcCCCEEEECchhhcCHH
Confidence 9998642 23344555666555 3 49999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCC
Q 007060 304 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382 (619)
Q Consensus 304 ~q~~l~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~ 382 (619)
+|.+++++||+..|.+.|++. +|.+|.|||||++. .||.+||++||.|+||.||++.+||+..
T Consensus 223 ~q~~l~~alG~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~ 286 (476)
T PRK01406 223 KQILLYEALGWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHG 286 (476)
T ss_pred HHHHHHHHhCCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999998777776 58999999999985 6999999999999999999999999966
Q ss_pred CcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 383 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 383 ~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
.. +...++++++.|.....++.+++||+.||.|.|
T Consensus 287 ~~--e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 287 DQ--EIFSLEELIELFDLERVSKSPARFDIKKLDWLN 321 (476)
T ss_pred cc--ccCCHHHHHHhcChhhCCCCCccccHHHHHHHH
Confidence 43 567788999999999999999999999999887
No 22
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-71 Score=610.47 Aligned_cols=298 Identities=24% Similarity=0.349 Sum_probs=265.0
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCC-CcCCCchhHH
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQ 173 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~ 173 (619)
.+|+|||||||||+|||||||+||+||+|||++||+|+|||||||++|+.++|+++|+++|+|||++|| .+|+||+|++
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~ 82 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNN 82 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999 4899999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCC-
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ- 244 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~- 244 (619)
.|+++|++||++|+||+|+||++++++.|. +.|++.||+++.++. ..++++++|||++..
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~~ 151 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPREG 151 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCCC
Confidence 999999999999999999999999998874 468899999887531 123468999998753
Q ss_pred -------------CCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHH
Q 007060 245 -------------NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 311 (619)
Q Consensus 245 -------------~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~a 311 (619)
..+..+.|+|+.|. +| .||||||++|||++|||||||||.||++|+++|.+++++
T Consensus 152 ~~~~~D~v~G~~~~~~~~~~D~Vi~Rs-------DG-----~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~a 219 (513)
T PRK14895 152 SITIHDTLQGEVVIENSHIDDMVLLRA-------DG-----TATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQA 219 (513)
T ss_pred ceEEEeecccceecccccCCCcEEEEe-------CC-----CcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHH
Confidence 34556677777777 44 899999999999999999999999999999999999999
Q ss_pred hCCCCCcEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhH
Q 007060 312 LGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 390 (619)
Q Consensus 312 Lg~~~P~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~ 390 (619)
||+..|.+.|++.+ |.+|.|||||++. .+|++||++||+|+||+||++.||||..+ -++..
T Consensus 220 LG~~~p~~~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~--~e~~~ 281 (513)
T PRK14895 220 FGYAVPSMTHIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGD--DEIIS 281 (513)
T ss_pred cCCCCCeEEEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCC--cCCCC
Confidence 99999998888875 6999999999987 58999999999999999999999999764 36778
Q ss_pred HHHHHHHHhhcCCCceeeEecceeEEEEe------CCCcceeecccccC
Q 007060 391 LEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 433 (619)
Q Consensus 391 Le~~~r~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~~ 433 (619)
++++++.|....+++++++||+.||.|.| ++.+++....+|+.
T Consensus 282 ~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 282 MTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred HHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999999999999999999888 45444434334443
No 23
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1e-70 Score=571.64 Aligned_cols=271 Identities=20% Similarity=0.234 Sum_probs=239.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHH
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQ 173 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~ 173 (619)
.+|||||||||||+|||||+|+||+||++||++||+|+|||||||+.|+.++|++.|+++|+||||+||+ +++||+|++
T Consensus 4 ~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~ 83 (299)
T PRK05710 4 TPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRHD 83 (299)
T ss_pred CceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhc------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEec-----
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYRE------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD----- 242 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d----- 242 (619)
.|+++|++|+++|+||+|+||++||++.|. +.|+++||+++.+++. +++||+|++
T Consensus 84 ~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~--------------~~~iRlk~~~~~~~ 149 (299)
T PRK05710 84 AYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRN--------------PPAWRLRVPDAVIA 149 (299)
T ss_pred HHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccC--------------CceEEEEcCCCceE
Confidence 999999999999999999999999987761 4689999999876531 579999986
Q ss_pred ---------CCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC
Q 007060 243 ---------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 313 (619)
Q Consensus 243 ---------~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg 313 (619)
+.+.+..++|||++|. +| +|||||||||||++|||||||||+||+++|++|.||+++||
T Consensus 150 ~~D~~~G~~~~~~~~~~~D~Vi~R~-------dg-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg 217 (299)
T PRK05710 150 FDDRLQGRQHQDLALAVGDFVLRRA-------DG-----LFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG 217 (299)
T ss_pred EEEecceeEeeCCCCCCCCEEEEec-------CC-----CccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC
Confidence 1234446888888887 44 99999999999999999999999999999999999999999
Q ss_pred CCCCcEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHH-
Q 007060 314 LYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL- 391 (619)
Q Consensus 314 ~~~P~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~L- 391 (619)
|..|.+.|++.+ |.+|+|||||++. .+|.. .|+.|+ |.+|+..|||+.... .+...+
T Consensus 218 ~~~P~y~H~pll~~~~g~kLSKr~~~----------------~~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~~ 276 (299)
T PRK05710 218 LPTPRYLHLPLVLNADGQKLSKQNGA----------------PALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEEL 276 (299)
T ss_pred CCCCeEEEeecccCCCCCcccccCCc----------------cchhh---cCcCHH-HHHHHHHcCCCCCcc-ccccccC
Confidence 999999999874 9999999999987 35555 799999 999999999987643 233323
Q ss_pred -HHHHHHHhhcCCCceeeEecc
Q 007060 392 -EYHIREELNKTAPRTMVVLNP 412 (619)
Q Consensus 392 -e~~~r~~~~~~~~R~~av~dp 412 (619)
++++..|....+++..+++.+
T Consensus 277 ~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 277 LAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred HHHHHHhCCHhhCCcCCccCCC
Confidence 688888888888888777654
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1.5e-70 Score=604.00 Aligned_cols=298 Identities=23% Similarity=0.295 Sum_probs=263.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 174 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~ 174 (619)
+|+|||||||||+||||||||||+||+|||++||+|+|||||||++|+.++|+++|+++|+||||+|| .+|+||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCC
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 246 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~ 246 (619)
|+++|++||++|+||+|+||++++++.|. ++|+++||+++.+++.+.++ ..++++||+|++.. .
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~~-~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQE-A 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCCC-C
Confidence 99999999999999999999999988764 46899999999988764322 23469999999853 3
Q ss_pred CCCCCceEEEEEecCCCCCCCCc----ceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEec
Q 007060 247 NFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 322 (619)
Q Consensus 247 n~~~~D~V~~R~~~~~h~~~g~~----w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef 322 (619)
...+.|.|.+++.+.++.. +|. -+|+||||||++|||++|||||||||.||++++++|.+++++||+..|.+.|+
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~ 231 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-DDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHL 231 (470)
T ss_pred ceeEEecccceEEecCccC-CCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEE
Confidence 3556666666665554332 221 14699999999999999999999999999999999999999999999988888
Q ss_pred cc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhc
Q 007060 323 SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 401 (619)
Q Consensus 323 ~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~ 401 (619)
+. +|.+|+|||||++. .||.+|+++||.|+||.+|++.+||+.... -+...++++++.|...
T Consensus 232 p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 232 PMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSLN 294 (470)
T ss_pred eeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCcc
Confidence 76 58899999999974 699999999999999999999999988754 3455678999999999
Q ss_pred CCCceeeEecceeEEEEe
Q 007060 402 TAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 402 ~~~R~~av~dp~kl~i~n 419 (619)
..++..++||..||.|.|
T Consensus 295 ~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred cCCCCCCeecHHHHHHHH
Confidence 999999999999998887
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=3.2e-69 Score=554.62 Aligned_cols=261 Identities=19% Similarity=0.206 Sum_probs=226.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 175 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~~ 175 (619)
++|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999997 57999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhh-c--ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCc
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYR-E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 252 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R-~--~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D 252 (619)
+++|++|+++|+||+|+||++|+++.| . +.|++.||+ +. . ...++++++|+|++. .+..+.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~---~---------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL---L---------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc---c---------cccCCCceEEEecCC--CCceEEE
Confidence 999999999999999999999999885 2 467888998 32 0 123456899999874 5678899
Q ss_pred eEEEEEecCCCCCCCCccee-----cccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccc-cC
Q 007060 253 LIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 326 (619)
Q Consensus 253 ~V~~R~~~~~h~~~g~~w~i-----~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~r-Ln 326 (619)
.|.+++... |+...++|.+ +||||||||||||+|||||||||+||+++|++|.||+++|||..|.+.|++. +|
T Consensus 146 ~~~g~~~~~-~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQD-LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEec-CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 999998643 3444556755 9999999999999999999999999999999999999999999999888887 59
Q ss_pred CCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 327 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 327 ~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
.+|+|||||++..+|+++ | +++++.+++..+||+.... .+..+++++
T Consensus 225 ~~g~kLSKR~~~~~i~~~------~--------------~~~~~~~~l~~lG~~~~~~-~~~~~~~~~ 271 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDLS------H--------------PLPALLAALRFLGLPPPPE-LAAASPAEL 271 (272)
T ss_pred CCCCeeeccCCccchhcC------C--------------cHHHHHHHHHHcCCCCCcc-cccCCHHHh
Confidence 999999999998665542 1 4678999999999987643 344455544
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=1.2e-63 Score=501.51 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=209.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 174 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~ 174 (619)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceE
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 254 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V 254 (619)
|+++|++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCcccc
Q 007060 255 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 333 (619)
Q Consensus 255 ~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~kLS 333 (619)
++|||||||||||++|||||||||+||++||++|.||+++||++.|.++|++++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 489999999999999999999999999999999999999999999999999987 56779999
Q ss_pred ccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEecce
Q 007060 334 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 413 (619)
Q Consensus 334 KRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~ 413 (619)
||+++ .||++||++|++|+||++|+..+||+.... -++..++++++.|.....++..+++|+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 799999999999999999999999998643 3456677899999999999999999999
Q ss_pred eEEEEe
Q 007060 414 KVVITN 419 (619)
Q Consensus 414 kl~i~n 419 (619)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 987766
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.3e-60 Score=477.26 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=210.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC---------cC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 166 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------~~ 166 (619)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCC
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 246 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~ 246 (619)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred CCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-
Q 007060 247 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 325 (619)
Q Consensus 247 n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL- 325 (619)
+++|||+||++|||++|||||||||+||+.++++|.|++++||++.|.++|++++
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2489999999999999999999999999999999999999999999999999985
Q ss_pred CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCc
Q 007060 326 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 405 (619)
Q Consensus 326 n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 405 (619)
|.+|.|||||+++ .||++||++|++|+||++|++.+|++..+. -+...++++++.|.....++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDG-EEFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCcCCHHHHHhcCCHhhCCc
Confidence 9999999999997 799999999999999999999999998764 25566788999999999999
Q ss_pred eeeEecceeEEEEe
Q 007060 406 TMVVLNPLKVVITN 419 (619)
Q Consensus 406 ~~av~dp~kl~i~n 419 (619)
.+++||+.||...|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999886655
No 28
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=1.8e-44 Score=349.98 Aligned_cols=171 Identities=44% Similarity=0.739 Sum_probs=142.7
Q ss_pred CCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeee
Q 007060 403 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 482 (619)
Q Consensus 403 ~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~ 482 (619)
|||+|||.||++|.|+|+|++....+++|+||+ ++++|+|.++|+++||||++|| +||+||++|+|+++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D~--------~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSDF--------FRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhHh--------hhccCCCEEEEecc
Confidence 689999999999999999988888999999998 7999999999999999999994 57999999999999
Q ss_pred eeEEEEEeEecCCCCCEEEEEEEEcCCCC---CCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCC
Q 007060 483 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 559 (619)
Q Consensus 483 ~~i~~~~~~~~d~~g~v~~l~~~~~~~~~---~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~ 559 (619)
|||+|++++ +|++|.|++|+|+|+++.. +|+|++|||||+ .++++||+|+|++||++++ ++ +++ +||
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~----~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp 139 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA----KDSVPVEVRLYDHLFTVDN-DE--DDL--INP 139 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG----CC-EEEEEEEE--SBSSS--GG--TGG--B-T
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccC----CCCeeeEEEEehhhcCCCc-cc--cce--ECC
Confidence 999999998 8889999999999998653 578889999998 6789999999999999988 54 565 999
Q ss_pred CCceeeceeEeccccccCCCCCeEEEEEeeeEEEe
Q 007060 560 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 594 (619)
Q Consensus 560 ~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD 594 (619)
+|+.++..|++|+++.++++|++|||||+|||+||
T Consensus 140 ~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 140 NSLKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp TSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred CCcEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 99998678999999999999999999999999998
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-27 Score=258.44 Aligned_cols=256 Identities=20% Similarity=0.220 Sum_probs=193.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcC--CEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCC-C
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK---ERG--GYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 162 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar---~~~--G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~-p 162 (619)
.|+++.+.||||||++++-+++.| ..| .+|+.+|+|+|.. .-.+.|++++.+|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999999888888 233 4899999999952 12467999999999999995 6
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccC-CCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEE
Q 007060 163 FKITYTSDYFQELYELAVELIRRGHAYVD-HQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240 (619)
Q Consensus 163 d~~~~qSd~~~~~ye~A~~LI~~G~AY~c-~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K 240 (619)
+..+++|+|++++.+++++||++|+||+. ..+.. +...+ +.| ..+|...++ ++|..|. |..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~Y----G~LS~~~~l---e~l~~ga--------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDY----GKLSGRDSL---EELQAGA--------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhh----HhhcCCCCh---hHHhhcc--------ccc
Confidence 88999999999999999999999999986 33333 33322 122 222211111 2344444 222
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-eeccccccccee-eeCCCCcceeec--cc----ccccchHHHHHHHHHh
Q 007060 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TL----EFETRRASYFWLLHAL 312 (619)
Q Consensus 241 ~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~V-dD~l~gITHviR--g~----E~~~~~~~q~~l~~aL 312 (619)
++. ...+..|||||+...+..|.|.++| .|+|+||..|++ .+...|-+-.|+ |. .|+.|...|.- .+.
T Consensus 172 ~~~--~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQse--a~~ 247 (464)
T COG0215 172 VDE--EKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSE--AAT 247 (464)
T ss_pred ccc--ccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHH--hhh
Confidence 222 2445589999999999999999999 899999999973 344445554444 23 56677777642 234
Q ss_pred C-CCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhH
Q 007060 313 G-LYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 390 (619)
Q Consensus 313 g-~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~ 390 (619)
| -+...+|.| |+|+++|+|||||.+| +.||++++.+ |.|++||.|+++.+++.+-+ ++.+.
T Consensus 248 g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~pl~-fsee~ 310 (464)
T COG0215 248 GVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSPLD-FSEEL 310 (464)
T ss_pred CCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCccc-cCHHH
Confidence 6 344889988 6899999999999999 7899999988 99999999999999988765 66666
Q ss_pred HHHHH
Q 007060 391 LEYHI 395 (619)
Q Consensus 391 Le~~~ 395 (619)
|++..
T Consensus 311 L~~A~ 315 (464)
T COG0215 311 LEEAK 315 (464)
T ss_pred HHHHH
Confidence 66553
No 30
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.94 E-value=8.1e-27 Score=241.84 Aligned_cols=250 Identities=18% Similarity=0.222 Sum_probs=167.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCCC-
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 162 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~p- 162 (619)
.|+++.+.||||||++++-+++.| .+..+++++|+|+|.. .-...|++.+.+||+.||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999999888888 3556899999999942 124689999999999999996
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEE
Q 007060 163 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240 (619)
Q Consensus 163 d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K 240 (619)
+..+++|++++++.+++++||++|+||.-. .+.. ++.+. +.| ..++.. ..++|..|...+.
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~Y----G~Ls~~----~~~~l~~~~~~~~------- 157 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDY----GKLSNQ----DLEDLEAGARVEV------- 157 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTT----TTTTT-----SHHHHHHCHHHTT-------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--ccc----cccccc----chhhHHhhhhccc-------
Confidence 578999999999999999999999999865 2222 12111 222 223321 1244555542221
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHHHHHH
Q 007060 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 309 (619)
Q Consensus 241 ~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q~~l~ 309 (619)
.....+..||+||+......+.|.++| .|+|+||..|+ +|=|.-|+.+++ .|+.|...|.
T Consensus 158 ---~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs--- 228 (300)
T PF01406_consen 158 ---DYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQS--- 228 (300)
T ss_dssp ----TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHH---
T ss_pred ---ccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHH---
Confidence 133455699999999888788899999 89999999996 444444444444 5566666664
Q ss_pred HHh-CCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchh
Q 007060 310 HAL-GLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 387 (619)
Q Consensus 310 ~aL-g~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~ 387 (619)
+|+ |-..+.+|.| |+|+++|+||||+.++ +.||+++..+ |+|.+||-||++..++.+-+ ++
T Consensus 229 ~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~l~-~s 291 (300)
T PF01406_consen 229 EAATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKPLN-FS 291 (300)
T ss_dssp HHHHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS-EE-E-
T ss_pred HHhhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCccc-cC
Confidence 444 7677889988 6899999999999998 6899999976 99999999999999988765 78
Q ss_pred HhHHHHH
Q 007060 388 LDRLEYH 394 (619)
Q Consensus 388 ~~~Le~~ 394 (619)
.+.|+++
T Consensus 292 ~~~l~~A 298 (300)
T PF01406_consen 292 EENLEEA 298 (300)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8777764
No 31
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=1.3e-24 Score=240.14 Aligned_cols=264 Identities=17% Similarity=0.212 Sum_probs=194.7
Q ss_pred CCeEEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchh-------------chHHHHHHHHHH
Q 007060 94 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 154 (619)
Q Consensus 94 ~g~v~tR-FaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------e~~e~~~~I~ed 154 (619)
++.|... .+|+|+|++||||||++++.+.+||. ++..|+..++|+|..- -...|++.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4556565 59999999999999999999999995 7789999999998532 246899999999
Q ss_pred HHHcCC-CCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccC
Q 007060 155 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 232 (619)
Q Consensus 155 L~wLGi-~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~ 232 (619)
+++||+ .|+..+++|+|.+.+++++++|+++|+||.+.-+.. .+... +.| ..++.. + .++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--~~y----g~ls~~-~---~~~~~~~~--- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--PDY----GKLSGR-N---LDELQAGA--- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--ccc----ccCCCC-C---HHHHhccC---
Confidence 999999 567778899999999999999999999996532111 11111 222 223321 1 23455553
Q ss_pred CceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccc-eeeeCCCCcceeec--ccc----cccchHH
Q 007060 233 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-CIVDSIENITHSLC--TLE----FETRRAS 304 (619)
Q Consensus 233 g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~-~VdD~l~gITHviR--g~E----~~~~~~~ 304 (619)
|.. ......+..||++|+.....++.|.++| .|.|+||..| ++.....|.+-.|+ |.| |+.|.-.
T Consensus 168 -----~~~--~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neia 240 (463)
T PRK00260 168 -----RVE--VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIA 240 (463)
T ss_pred -----cCC--cccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHH
Confidence 222 2233556699999999888888888999 6899999999 55666677776665 567 6666655
Q ss_pred HHHHHHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCC
Q 007060 305 YFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 383 (619)
Q Consensus 305 q~~l~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~ 383 (619)
|.- ...|.+.+.+|-| +++.++|+|||||+++ +.|+..+.+. |.|++||-|+++..+....
T Consensus 241 qs~--a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~~~~~~~~ 302 (463)
T PRK00260 241 QSE--AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLSAHYRSPL 302 (463)
T ss_pred HHH--HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHhCCCCCCC
Confidence 532 2346455567775 6789999999999998 5799999986 9999999999986665443
Q ss_pred cchhHhHHHHHHH
Q 007060 384 SLIRLDRLEYHIR 396 (619)
Q Consensus 384 ~~~~~~~Le~~~r 396 (619)
.++.+.|++..+
T Consensus 303 -~fs~~~l~~a~~ 314 (463)
T PRK00260 303 -NFSEEALEQAKK 314 (463)
T ss_pred -ccCHHHHHHHHH
Confidence 466666655543
No 32
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.92 E-value=2.1e-24 Score=238.48 Aligned_cols=254 Identities=17% Similarity=0.213 Sum_probs=188.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCchh-------------chHHHHHHHHHHHHHcCCCC
Q 007060 101 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 162 (619)
Q Consensus 101 FaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------e~~e~~~~I~edL~wLGi~p 162 (619)
-.|+|+|++||||+|+++..+.++| .|...|+..+||+|+.- -...|.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999 67789999999999632 23689999999999999997
Q ss_pred CC-cCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEE
Q 007060 163 FK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 239 (619)
Q Consensus 163 d~-~~~qSd~~~~~ye~A~~LI~~G~AY~c~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~ 239 (619)
+. .+.+|+|.+.+++++++|+++|+||.+. .+.. .+... +. |..+|. .+ .++|..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~----yG~ls~-~~---~~~~~~~~--------~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KD----YGKLSK-QD---LDQLEAGA--------RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--ch----hccCCC-CC---HHHHhccc--------cc
Confidence 76 5789999999999999999999999764 2111 11111 12 233331 11 23444443 22
Q ss_pred EecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHHHHH
Q 007060 240 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 308 (619)
Q Consensus 240 K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q~~l 308 (619)
..+ ..+.+..||++|+.....++.|.++| .|.|+||..|+ +|=|..|+.|+. .|+.+...|...
T Consensus 169 ~~~--~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a 243 (465)
T TIGR00435 169 DVD--EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA 243 (465)
T ss_pred Ccc--cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccccc---chHHHHHHHHHH
Confidence 222 23455699999999887788898999 78999999997 333444555544 455565555421
Q ss_pred HHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchh
Q 007060 309 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 387 (619)
Q Consensus 309 ~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~ 387 (619)
..|.+.+.+|.+ ++++++|.|||||+++ +.|++.+.+. |.|+|+|-|+++.+++.+- .++
T Consensus 244 --~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~l-~fs 304 (465)
T TIGR00435 244 --AFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYRSPL-DFS 304 (465)
T ss_pred --hcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCCCCC-ccC
Confidence 247666777765 6799999999999998 5799999987 9999999999988775544 477
Q ss_pred HhHHHHHHH
Q 007060 388 LDRLEYHIR 396 (619)
Q Consensus 388 ~~~Le~~~r 396 (619)
++.|++..+
T Consensus 305 ~~~l~~a~~ 313 (465)
T TIGR00435 305 EELLEAAKN 313 (465)
T ss_pred HHHHHHHHH
Confidence 777776654
No 33
>PLN02946 cysteine-tRNA ligase
Probab=99.91 E-value=1.2e-24 Score=242.94 Aligned_cols=253 Identities=15% Similarity=0.130 Sum_probs=193.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCCC-
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 162 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~p- 162 (619)
.|+++|++||||+|++++.+.++| .|...|+..+||+|.. .-...|.+.+.++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 899999999999999999999998 3556999999999842 224689999999999999974
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEe
Q 007060 163 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 241 (619)
Q Consensus 163 d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~ 241 (619)
+..+.+|+|.+.+.+++++|+++|+||.-..+.. .+.++ +.| ..+|.. ..++|..|. |+..
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~Y----G~Ls~~----~l~~l~~g~--------rv~~ 228 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEY----GKLSGR----KLEDNRAGE--------RVAV 228 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhh----hhcCCC----ChhHhhcCC--------CCCc
Confidence 4578999999999999999999999996322111 11111 122 223221 124455554 3222
Q ss_pred cCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHHHHHHH
Q 007060 242 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 242 d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q~~l~~ 310 (619)
+ ....+..||++|+.....+|.|.++| .|+|+||..|+ +|=|--|+.|++ .|+.|.-.|.. .
T Consensus 229 ~--~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a 301 (557)
T PLN02946 229 D--SRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--A 301 (557)
T ss_pred c--cccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHH--H
Confidence 2 34556699999999877778999999 89999999997 667777777777 78888877753 2
Q ss_pred HhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHh
Q 007060 311 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 389 (619)
Q Consensus 311 aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~ 389 (619)
+.|.....+|.| |+++++|.|||||++| +.|++++.+. |.|+++|-||++.+++.+. .++++
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~~l-~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRSPI-NYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCCCc-EecHH
Confidence 346555567765 7899999999999998 6899999986 9999999999998887655 47777
Q ss_pred HHHHHHH
Q 007060 390 RLEYHIR 396 (619)
Q Consensus 390 ~Le~~~r 396 (619)
.|++..+
T Consensus 365 ~L~~a~~ 371 (557)
T PLN02946 365 QLESASE 371 (557)
T ss_pred HHHHHHH
Confidence 7776644
No 34
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=4.1e-24 Score=235.22 Aligned_cols=253 Identities=14% Similarity=0.137 Sum_probs=192.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Cch-------------hchHHHHHHHHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 153 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------re~~e~~~~I~e 153 (619)
.|+++.++||||+|++++.+.++| .+...|+++|+|+ |+. .-...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 699999999999999999999988 3456899999999 541 124678999999
Q ss_pred HHHHcCCCCCC-cCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHh--ccc
Q 007060 154 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMR--NGR 229 (619)
Q Consensus 154 dL~wLGi~pd~-~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~--~G~ 229 (619)
+++.||+.++. .+.+|++.+.+.+++++|+++|+||.-..+.. ++..+ +.| ..+|. . ..++|. .|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~--~~Y----G~ls~-~---~l~~l~~~~~~ 177 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF--KSY----GQMAG-I---NLNDFKDMSVS 177 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc--cch----hhhcC-C---CHHHHhhhccC
Confidence 99999998764 56789999999999999999999996321111 11111 122 22221 1 123343 232
Q ss_pred ccCCceEEEEEecCCCCCCCCCceEEEEEe---cCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecc
Q 007060 230 IEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCT 295 (619)
Q Consensus 230 ~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~---~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg 295 (619)
|+.. .....+..||++|+.. .+.++.|.++| .|+|+||..|+ +|=|..|+.|++
T Consensus 178 --------~v~~--~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliF-- 245 (481)
T PRK14534 178 --------RVEI--DKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIG-- 245 (481)
T ss_pred --------cCCc--ccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCC--
Confidence 2222 2235566999999975 45577788899 89999999997 667777777777
Q ss_pred cccccchHHHHHHHHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHH
Q 007060 296 LEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 374 (619)
Q Consensus 296 ~E~~~~~~~q~~l~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl 374 (619)
.|+.|...|.. .+.|...+.+|.| ++|+++|.|||||.++ +.||++|.+.|+.|+|+|-|+
T Consensus 246 -PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~l 307 (481)
T PRK14534 246 -VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYFC 307 (481)
T ss_pred -CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHHH
Confidence 77888888852 2247778889988 5899999999999998 689999999999999999999
Q ss_pred HHcCccCCCcchhHhHHHHHH
Q 007060 375 QGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 375 ~~lG~s~~~~~~~~~~Le~~~ 395 (619)
++..++.+.+ ++++.|++..
T Consensus 308 ls~~yr~~l~-Fs~e~l~~a~ 327 (481)
T PRK14534 308 LTAHYRTQLK-FTFNNLKACK 327 (481)
T ss_pred HhCCCCCCCC-CCHHHHHHHH
Confidence 9999987765 8888888775
No 35
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=3.2e-24 Score=230.84 Aligned_cols=256 Identities=15% Similarity=0.075 Sum_probs=189.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCC-CC
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-EP 162 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi-~p 162 (619)
.|+|+|++||||+|+++..+.++|. +...|+..+||.|.. .-...|.+.+.++++.||+ .|
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7999999999999999999999983 446899999999842 2246788999999999997 67
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCC----CHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEE
Q 007060 163 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 237 (619)
Q Consensus 163 d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~c----s~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~l 237 (619)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++.. ++|..|...
T Consensus 96 ~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~-------~~~~~~~~~------ 159 (384)
T PRK12418 96 RDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDR-------ATMLELFAE------ 159 (384)
T ss_pred CccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCH-------HHHHhhhcc------
Confidence 8889999999999999999999999996443 221 22222 222211 12222 233332100
Q ss_pred E-EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHH
Q 007060 238 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 305 (619)
Q Consensus 238 R-~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q 305 (619)
| ...+ .....+..||+|||...+.+|.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.|...|
T Consensus 160 ~~~~~~-~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F---PHHeneiaq 235 (384)
T PRK12418 160 RGGDPD-RPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIF---PHHEFSAAH 235 (384)
T ss_pred cccCcc-cccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCcccccc---chhHhHHHH
Confidence 1 0111 113455699999999877788999999 89999999996 555555566555 566666666
Q ss_pred HHHHHH-hCC-CCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCC
Q 007060 306 FWLLHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382 (619)
Q Consensus 306 ~~l~~a-Lg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~ 382 (619)
. .+ .|- +.+.+|.+ ++|+++|+|||||++| +.|+..+.+.|+.|.++|-||++..++.+
T Consensus 236 ~---~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~~ 297 (384)
T PRK12418 236 A---EAATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRAD 297 (384)
T ss_pred H---HHhcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCCC
Confidence 4 33 454 56778988 4799999999999998 57999999899999999999987777666
Q ss_pred CcchhHhHHHHHHH
Q 007060 383 DSLIRLDRLEYHIR 396 (619)
Q Consensus 383 ~~~~~~~~Le~~~r 396 (619)
.. ++++.|++..+
T Consensus 298 l~-fs~e~l~~a~~ 310 (384)
T PRK12418 298 RE-WTDAVLAEAEA 310 (384)
T ss_pred cc-cCHHHHHHHHH
Confidence 54 77777776544
No 36
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=1.7e-23 Score=231.18 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=191.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Cch-------------hchHHHHHHHHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 153 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------re~~e~~~~I~e 153 (619)
.|++++++||||+|+++..+.++| .+...|+.+|+|+ |+. .-...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999988 3456899999999 542 124578999999
Q ss_pred HHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhccccc
Q 007060 154 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 231 (619)
Q Consensus 154 dL~wLGi~p-d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~ 231 (619)
+++.||+.+ +..+++++|.+.+.+++++|+++|+||.-..+.. .+... +. |..+|.. ..++|..|.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~--~~----YG~Ls~~----~~~~l~~g~-- 177 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTF--PS----YGSLASA----AVEDLQAGA-- 177 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcc--cc----hhhhcCC----CHHHhhcCC--
Confidence 999999986 4568999999999999999999999996321110 11111 12 2233221 123455553
Q ss_pred CCceEEEEEecCCCCCCCCCceEEEEEec--CC-CCCCCCcc-eecccccccce----------eeeCCCCcceeecccc
Q 007060 232 EGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 297 (619)
Q Consensus 232 ~g~~~lR~K~d~~~~n~~~~D~V~~R~~~--~~-h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E 297 (619)
|+..+ ....+..||++|+... .+ .+.|.++| .|.|+||..|+ +|=|..|+.+++ .
T Consensus 178 ------~v~~~--~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF---P 246 (490)
T PRK14536 178 ------RIEHD--TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR---V 246 (490)
T ss_pred ------cCCCC--CCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC---c
Confidence 22222 2445669999998753 22 46788999 79999999997 456677777766 6
Q ss_pred cccchHHHHHHHHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHH
Q 007060 298 FETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 376 (619)
Q Consensus 298 ~~~~~~~q~~l~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~ 376 (619)
|+.|...|.- .+-|.+.+.+|.+ ++|+++|.|||||+++ +.||+.|.+.|+.|.|+|-|+++
T Consensus 247 HHeneiAqs~--a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls 309 (490)
T PRK14536 247 HHTNEIAQCE--AATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLG 309 (490)
T ss_pred chhhHHHHHH--HhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHh
Confidence 7788877752 2247777889988 5799999999999998 68999999999999999999999
Q ss_pred cCccCCCcchhHhHHHHHHH
Q 007060 377 IGISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 377 lG~s~~~~~~~~~~Le~~~r 396 (619)
..++.+.. ++++.|++..+
T Consensus 310 ~~yr~~l~-Fs~e~l~~a~~ 328 (490)
T PRK14536 310 GHYRSQLA-FSWEALKTAKA 328 (490)
T ss_pred CCCCCCCC-CCHHHHHHHHH
Confidence 88877764 78877776655
No 37
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.90 E-value=1.6e-23 Score=226.81 Aligned_cols=260 Identities=14% Similarity=0.074 Sum_probs=188.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCC-C
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 162 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~-p 162 (619)
.|+|++++||||+|++++.+.++| .+...|+..+||.|.. .-...|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999999999 3556899999999842 12467889999999999986 7
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCC----CHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEE
Q 007060 163 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 237 (619)
Q Consensus 163 d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~c----s~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~l 237 (619)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++.. ++|..|.. .
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~L-s~~~~-------~~~~~~~~---~--- 186 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT--EQFGYE-SGYDR-------ATMLELFA---E--- 186 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch--hccccc-cCCCH-------HHHHhhhc---c---
Confidence 8889999999999999999999999996432 111 22222 122211 12222 23333110 0
Q ss_pred E-EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eeccccccccee-eeCCCCcceeec--ccccc-cchHHHHHHHHH
Q 007060 238 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLEFE-TRRASYFWLLHA 311 (619)
Q Consensus 238 R-~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~V-dD~l~gITHviR--g~E~~-~~~~~q~~l~~a 311 (619)
| ...+ .....+..||+|||.....+|.|.++| .|+|+||..|++ ...+.|-+-.|+ |.|++ ++..-......+
T Consensus 187 ~~~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A 265 (411)
T TIGR03447 187 RGGDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEA 265 (411)
T ss_pred cccCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHH
Confidence 1 1111 113456699999999887789999999 899999999973 345555555666 55554 222222333344
Q ss_pred -hCC-CCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhH
Q 007060 312 -LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 388 (619)
Q Consensus 312 -Lg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~ 388 (619)
.|- +.+.+|.+ ++|+++|+|||||++| +.|++.+.+.|+.|+++|-|+++..++.+-+ ++.
T Consensus 266 ~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~-fs~ 329 (411)
T TIGR03447 266 ATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQDRD-WTD 329 (411)
T ss_pred hcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCCCCc-cCH
Confidence 365 66889988 5799999999999998 5799999999999999999998888877654 666
Q ss_pred hHHHHH
Q 007060 389 DRLEYH 394 (619)
Q Consensus 389 ~~Le~~ 394 (619)
+.|++.
T Consensus 330 e~l~~a 335 (411)
T TIGR03447 330 AVLAEA 335 (411)
T ss_pred HHHHHH
Confidence 666654
No 38
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=8e-23 Score=230.22 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=188.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCCCC
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 163 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~pd 163 (619)
.|+|++++||||||++++.+.++| .+...|+..++|+|.. .-...|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999999998 3456999999999842 1246789999999999999866
Q ss_pred C-cCCCchhHHHHHHHHHHHHHcCCcccC-CCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEE
Q 007060 164 K-ITYTSDYFQELYELAVELIRRGHAYVD-HQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240 (619)
Q Consensus 164 ~-~~~qSd~~~~~ye~A~~LI~~G~AY~c-~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K 240 (619)
. .+.+|++.+.+.+++++|+++|+||.- ..+.. .+..+ +.| ..+|.. ..++|+.|. |+.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f--~~Y----G~LS~~----~~~~l~~g~--------rve 396 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF--AAY----GQLSGK----SLDDLRAGE--------RVE 396 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc--ccc----ccccCC----ChHHhcCCC--------ccc
Confidence 4 678999999999999999999999953 11111 12221 222 222211 124455554 222
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHHHHHH
Q 007060 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 309 (619)
Q Consensus 241 ~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q~~l~ 309 (619)
.+ ....+..||++|+....++|.|.++| .|+|+||..|+ +|=|.-|+.|++ .|+.|.-.|..-
T Consensus 397 ~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQseA- 470 (699)
T PRK14535 397 VD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQSVG- 470 (699)
T ss_pred cc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHHHHH-
Confidence 22 23455699999999888888899999 89999999996 566777777776 788888877531
Q ss_pred HHhCC----------------CCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 007060 310 HALGL----------------YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 372 (619)
Q Consensus 310 ~aLg~----------------~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~ 372 (619)
+.|. +...+|.| |+++++|+|||||+++ +.|++.+.++ |.|+++|-
T Consensus 471 -~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl 533 (699)
T PRK14535 471 -ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRF 533 (699)
T ss_pred -hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHH
Confidence 2343 13557876 6899999999999998 5799999986 99999999
Q ss_pred HHHHcCccCCCcchhHhHHHHHH
Q 007060 373 FVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 373 fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
|+++.++..+-. ++.+.|++..
T Consensus 534 ~lLsshYRspL~-fS~e~Le~Ak 555 (699)
T PRK14535 534 FILRAHYRSPLN-YSDAHLDDAK 555 (699)
T ss_pred HHHcCCCCCCCC-cCHHHHHHHH
Confidence 999877766654 6666666653
No 39
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.87 E-value=6.1e-22 Score=226.17 Aligned_cols=261 Identities=14% Similarity=0.164 Sum_probs=187.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--H----cCCEEEEeeecCCch--------------hchHHHHHHHHHHHHHcCCC
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK--E----RGGYCYLRYDDTNPE--------------AEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar--~----~~G~~iLRidDTDp~--------------re~~e~~~~I~edL~wLGi~ 161 (619)
.|+++++.||||||++++.+.++| . |...|++.|+|+|.. .-...|++.+.+|++.||+.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999999999999998888 2 346899999999842 12357899999999999998
Q ss_pred C-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEE
Q 007060 162 P-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 239 (619)
Q Consensus 162 p-d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~ 239 (619)
+ +.++++|+|++.+.+++++|+++|+||.-..+.. ++.+++..+ ..|..++++. ....+.|..|.. . +
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~--~~Yg~L~p~~-~~~~~~~~~g~~---~----l 216 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAG--HVYPKLEPES-VADEDRIAEGEG---A----L 216 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccch--hhHHhhChhh-cCCHHHHhcccC---C----c
Confidence 6 5688999999999999999999999997543322 333332110 0122233211 111123333431 0 1
Q ss_pred EecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccce----------eeeCCCCcceeecccccccchHHHHHH
Q 007060 240 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 308 (619)
Q Consensus 240 K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~----------VdD~l~gITHviRg~E~~~~~~~q~~l 308 (619)
. +......+..||++|++..+.+|.|.++| .|.|+||..|. +|=|-.||.+++ .|+.|.-.|.
T Consensus 217 ~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~F---PHHeNEiAQs-- 290 (651)
T PTZ00399 217 G-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKF---PHHDNELAQS-- 290 (651)
T ss_pred c-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCC---CcchhHHHHH--
Confidence 0 11113344589999999988889999999 79999999885 344444555544 6677777764
Q ss_pred HHH-hCC-CCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcc
Q 007060 309 LHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSL 385 (619)
Q Consensus 309 ~~a-Lg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~ 385 (619)
+| .|- ..+.+|.| |+|+++|.|||||++| +.|++.+.+. |.|++||-|+++..+.... .
T Consensus 291 -eA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~~~~~dl-d 352 (651)
T PTZ00399 291 -EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLHKWDKPM-N 352 (651)
T ss_pred -HHhhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhcCCCCCC-c
Confidence 33 343 55778888 8999999999999998 6799999988 9999999999877776554 4
Q ss_pred hhHhHHHHHHH
Q 007060 386 IRLDRLEYHIR 396 (619)
Q Consensus 386 ~~~~~Le~~~r 396 (619)
++++.+.+...
T Consensus 353 FS~e~l~~a~~ 363 (651)
T PTZ00399 353 YSDESMDEAIE 363 (651)
T ss_pred cCHHHHHHHHH
Confidence 77777766643
No 40
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3e-21 Score=207.76 Aligned_cols=250 Identities=15% Similarity=0.145 Sum_probs=184.0
Q ss_pred CCeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEeeecCCc-----hh-----ch--------HHH
Q 007060 94 GGNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNP-----EA-----EK--------KEY 147 (619)
Q Consensus 94 ~g~v~tRF--aPsPtG~LHIGhaRaal~n~~~Ar------~~~G~~iLRidDTDp-----~r-----e~--------~e~ 147 (619)
.|+-+|-| .|+.+..-||||||+++--+.+-| .|+-.|+++|+|+|. +| +. .-|
T Consensus 52 ~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~ 131 (586)
T KOG2007|consen 52 NGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYY 131 (586)
T ss_pred CCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence 44446777 688888899999999998777777 477899999999995 22 11 136
Q ss_pred HHHHHHHHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhcccCCCCCCCCChHHHHHHHHHH
Q 007060 148 IDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDM 225 (619)
Q Consensus 148 ~~~I~edL~wLGi~p-d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M 225 (619)
++.+..||..|.+-| +..++-|+|++++.++++++|++|.||+...|.. ++.+ ++..|..+.-+ + +.+
T Consensus 132 e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k-----f~~~YgKL~G~--~---~~~ 201 (586)
T KOG2007|consen 132 EEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK-----FPHSYGKLVGQ--R---KNL 201 (586)
T ss_pred HHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-----ccchhhhhcCc--h---hhc
Confidence 789999999999875 5689999999999999999999999998765543 2322 12222222211 0 223
Q ss_pred hcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eeccccccccee----------eeCCCCcceeec
Q 007060 226 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSLC 294 (619)
Q Consensus 226 ~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~V----------dD~l~gITHviR 294 (619)
..| +|+.+ + +...+..||++|+..+++.|.|.++| .|.|+||..|.+ |=|--||...+
T Consensus 202 ~~g---Eg~l~-----d--s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~F- 270 (586)
T KOG2007|consen 202 QEG---EGVLS-----D--SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAF- 270 (586)
T ss_pred ccC---cCccc-----c--ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccC-
Confidence 333 33333 1 33455689999999999999999999 899999999974 33444444444
Q ss_pred ccccccchHHHHHHHHHhCCC-CCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 007060 295 TLEFETRRASYFWLLHALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 372 (619)
Q Consensus 295 g~E~~~~~~~q~~l~~aLg~~-~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~ 372 (619)
.|+.|...|.- .++.-. -..||-| |||+++|.||||+..| +.||+.+... |+|.++|-
T Consensus 271 --PHHeNEiAQ~e--A~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke~Lk~-~sp~qLRl 330 (586)
T KOG2007|consen 271 --PHHENEIAQSE--AAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKEALKK-YSPRQLRL 330 (586)
T ss_pred --CCcccHHHHHH--HHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHHHHHh-cCHHHHHH
Confidence 67788877732 222211 1456655 8999999999999998 7899999976 99999999
Q ss_pred HHHHcCccCCCc
Q 007060 373 FVQGIGISRSDS 384 (619)
Q Consensus 373 fl~~lG~s~~~~ 384 (619)
||++..|..+-+
T Consensus 331 ~fl~~~wr~~ld 342 (586)
T KOG2007|consen 331 AFLLHQWRSPLD 342 (586)
T ss_pred HHHHHHhcCcCC
Confidence 999999977654
No 41
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.78 E-value=2.1e-18 Score=172.24 Aligned_cols=184 Identities=20% Similarity=0.152 Sum_probs=140.8
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEeeecCCc------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTNP------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDTDp------------~re~~e~~~~I~edL~wL 158 (619)
|++=| +|+|||+|||||+|++++-+.+|| .+.| .+.--++|.+. ..-...+.+.+.+++++|
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L 81 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRL 81 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555 899999999999999999999998 3345 33333445542 122456788999999999
Q ss_pred CCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEE
Q 007060 159 GWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR 238 (619)
Q Consensus 159 Gi~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR 238 (619)
|+.+|...+.|++.+.+.+..++|+++|.+|.-. |..++.
T Consensus 82 ~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~~ 121 (212)
T cd00671 82 DVRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWLD 121 (212)
T ss_pred CCcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEEe
Confidence 9999988899999888889999999999998311 111111
Q ss_pred EEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccccc---ccceeeeCCCCccee--ecccccccchHHHHHHHHHhC
Q 007060 239 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALG 313 (619)
Q Consensus 239 ~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~---fa~~VdD~l~gITHv--iRg~E~~~~~~~q~~l~~aLg 313 (619)
+. .. ....|+|+-|. +| .|||. +|+.+++..+++||+ |+|.||..+.+++.+++++||
T Consensus 122 ~~---~~--~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 122 LT---EF--GDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred ch---hh--CCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 10 00 12358899988 66 68998 799999999999999 899999999999999999999
Q ss_pred CC-CCcEEe--ccccCCC-Ccccccccc
Q 007060 314 LY-QPYVWE--YSRLNVS-NTVMSKRKL 337 (619)
Q Consensus 314 ~~-~P~~~e--f~rLn~~-g~kLSKRk~ 337 (619)
+. .|...| |+.++.. |.|||||++
T Consensus 185 ~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 185 YDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 86 555545 3666655 999999975
No 42
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.63 E-value=1.4e-15 Score=170.23 Aligned_cols=227 Identities=20% Similarity=0.208 Sum_probs=158.0
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCEE---EEeeecCCc-------------hhchHHHHHHHHHH
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYC---YLRYDDTNP-------------EAEKKEYIDHIEEI 154 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~---iLRidDTDp-------------~re~~e~~~~I~ed 154 (619)
+++|++-| +|+|||+|||||+|++++.+.+||. +.|.- +.-++|.+. ....+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999 9999999999999999999999994 45644 444577763 23457889999999
Q ss_pred HHHcCCCCCCcCCCchhH--HHHHHHHHHHHHcCCcc-cCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhccccc
Q 007060 155 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 231 (619)
Q Consensus 155 L~wLGi~pd~~~~qSd~~--~~~ye~A~~LI~~G~AY-~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~ 231 (619)
+++||+.+|..++.|+.+ +.+.+..++|.++|.+| .-
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------------------------------- 229 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------------------------------- 229 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee----------------------------------------
Confidence 999999998766666543 35678889999999998 21
Q ss_pred CCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccccc---ccceeeeCCCCccee--ecccccccchHHHH
Q 007060 232 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYF 306 (619)
Q Consensus 232 ~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~---fa~~VdD~l~gITHv--iRg~E~~~~~~~q~ 306 (619)
+|..++++. ..+. -.|+|+.|. +| .|||. +|..+.-... .+++ |.|.||..+-++..
T Consensus 230 ~Ga~~~~~~---~~~~--~~~~vl~ks-------dG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 230 DGALWVRLT---EFGD--DKDRVLIKS-------DG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred CCcEEEEch---hhCC--CCCeEEEEC-------CC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHH
Confidence 011111111 0111 137899988 55 46664 4433322221 3565 68999999999999
Q ss_pred HHHHHhCCCCC--cEEec---ccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCH-------------
Q 007060 307 WLLHALGLYQP--YVWEY---SRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 367 (619)
Q Consensus 307 ~l~~aLg~~~P--~~~ef---~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~p------------- 367 (619)
.+.++||+..+ ..+.| |.+ +-+|.|||||+|+ ..++.+|.++++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999997644 22443 443 5578999999998 47899999987767
Q ss_pred ---HHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 368 ---TSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 368 ---eAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
.||+-|+++.-. ..+..++|+.+.+.
T Consensus 357 vgidAiR~~~L~~~~-~~~~~Fd~~~~~~~ 385 (507)
T PRK01611 357 VGIDAVRYFDLSRSR-DKDLDFDLDLALSF 385 (507)
T ss_pred hccceeEehhhhcCC-CCCCccCHHHHHhh
Confidence 778877775533 33335777665433
No 43
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=1.8e-14 Score=160.88 Aligned_cols=276 Identities=18% Similarity=0.090 Sum_probs=162.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCc-------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 158 (619)
++|==+|+|||.+||||+|+.+..+.++|. +...|+.-+||.+. ..-...|.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455558999999999999999999999994 34568888888863 223467889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc----------C--CCCHHHHHHhhcccCCCCCCCCCh-H----HH-
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKKMNSPWRDRPI-A----ES- 218 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~----------c--~cs~eel~~~R~~~~~~~~R~~s~-e----e~- 218 (619)
|+.+|..+++++ +.+...+...+|.++|++|. | +++..++.. ++ +..+|..+. + ++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~---~~-p~~~~~~~~~~~~~~~~~ 159 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE---DG-YRCPPTGAPVEWVEEESY 159 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC---CC-CCCCCCCCcceEEecCeE
Confidence 999987655665 88888899999999999986 2 334444432 11 111111110 0 00
Q ss_pred ---HHHHHHHhcccccCCceEEEEEecC------CCCCCCCCceEEEE-EecCCCCCCCC------cc----------ee
Q 007060 219 ---LKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW----------CI 272 (619)
Q Consensus 219 ---l~~fe~M~~G~~~~g~~~lR~K~d~------~~~n~~~~D~V~~R-~~~~~h~~~g~------~w----------~i 272 (619)
+..|.+.....+..+.. +...+. ..-.....|+.+.| -..=+.|..++ -| .+
T Consensus 160 f~~l~~~~~~l~~~~~~~~~--~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~ 237 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPD--FIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALG 237 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhc
Confidence 00111100000100000 000000 00011357888888 32212222222 24 12
Q ss_pred cccccccceee--eCC--CCcceeeccccccc-chHHHHHHHHHhCCCCCcEE-eccccCCCCccccccccccccccCcc
Q 007060 273 YPSYDYAHCIV--DSI--ENITHSLCTLEFET-RRASYFWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYV 346 (619)
Q Consensus 273 ~PTY~fa~~Vd--D~l--~gITHviRg~E~~~-~~~~q~~l~~aLg~~~P~~~-ef~rLn~~g~kLSKRk~~~lV~~g~v 346 (619)
+|. .|... +.. ...+--+-|.|... +...+..++.+++...|..| .++++.++|.|||||+++
T Consensus 238 ~p~---~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN-------- 306 (511)
T PRK11893 238 YPD---DEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN-------- 306 (511)
T ss_pred ccc---ccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc--------
Confidence 221 11100 000 00111123555443 23333345556677777655 468888999999999998
Q ss_pred CCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 347 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 347 ~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
+.++..+.+. +.+.|+|-|+++.+....+..++++.+.+..+.
T Consensus 307 -------~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 307 -------VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred -------EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 5788898887 999999999998866555566888888665544
No 44
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.49 E-value=8.6e-13 Score=138.96 Aligned_cols=241 Identities=18% Similarity=0.175 Sum_probs=142.6
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCCch------h--------------------chHHH
Q 007060 99 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE------A--------------------EKKEY 147 (619)
Q Consensus 99 tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp~------r--------------------e~~e~ 147 (619)
+==+|+|||.||||||++.++-+.++|. ..| .|+.-+|+.+.. + -..++
T Consensus 5 ~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T cd00668 5 TTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEM 84 (312)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH
Confidence 3348999999999999999998888883 344 566666664411 1 12468
Q ss_pred HHHHHHHHHHcCCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHH
Q 007060 148 IDHIEEIVQWMGWEPF--KI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFE 223 (619)
Q Consensus 148 ~~~I~edL~wLGi~pd--~~--~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe 223 (619)
.+.|.++|+.||+..| .. +...+|.+...+...+|.++|++|.-.-.. +.. ..-+-..+ +-.-++.+
T Consensus 85 ~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~~~ 155 (312)
T cd00668 85 SGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKLLK 155 (312)
T ss_pred HHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHHHH
Confidence 8899999999999766 43 445567778888899999999999743211 000 00000111 00001122
Q ss_pred HHhcccccCCceEEEEEe---cCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeC---------CC----
Q 007060 224 DMRNGRIEEGKATLRMKQ---DMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS---------IE---- 287 (619)
Q Consensus 224 ~M~~G~~~~g~~~lR~K~---d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~---------l~---- 287 (619)
.+..+.... + .+|. +.- .+ ..|+.+.|-.. || ...|++++-|=.|-+ ..
T Consensus 156 ~~~~~~~~p-~---~~~~~~~~~l-~~--~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~ 220 (312)
T cd00668 156 ALRRGKIVP-E---HVKNRMEAWL-ES--LLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEW 220 (312)
T ss_pred HHhcCCcCC-h---HHHHHHHHHH-hC--CCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchh
Confidence 222222100 0 0000 000 11 23888877532 33 234555555411111 00
Q ss_pred -----Ccceeecccccc-cchHHHHHHHHHhCCC--CCcEEeccccCCCC-ccccccccccccccCccCCCCCcccccHH
Q 007060 288 -----NITHSLCTLEFE-TRRASYFWLLHALGLY--QPYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLA 358 (619)
Q Consensus 288 -----gITHviRg~E~~-~~~~~q~~l~~aLg~~--~P~~~ef~rLn~~g-~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~ 358 (619)
.+.--+=|.|+. .+......++.+++.. ...+|.+++++.+| .|||||+++ ..++.
T Consensus 221 ~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~ 285 (312)
T cd00668 221 FKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPS 285 (312)
T ss_pred hhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHH
Confidence 122122366666 4555555556667643 33567788888877 999999998 46889
Q ss_pred HHHHcCCCHHHHHHHHHHcCc
Q 007060 359 GLRRRGVTSTSINAFVQGIGI 379 (619)
Q Consensus 359 ~lrrrG~~peAI~~fl~~lG~ 379 (619)
.+.++ +.++|+|-|++..+-
T Consensus 286 d~~~~-~~~da~R~~l~~~~~ 305 (312)
T cd00668 286 DVVEK-YGADALRYYLTSLAP 305 (312)
T ss_pred HHHHH-cCcHHHHHHHHhcCC
Confidence 99987 999999999987763
No 45
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=4.8e-14 Score=132.06 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=101.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 172 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~-----~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 172 (619)
++.++|+|||.+||||+|.+++.+.+||.+ +..++..+||.+.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 467899999999999999999999999975 8899999999997655443222
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCc
Q 007060 173 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 252 (619)
Q Consensus 173 ~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D 252 (619)
.++.+++.. .+.+.|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 112222211 11111111100
Q ss_pred eEEEEEecCCCCCCCCcceecccccccceeeeCCCCc---ceeecccccccchHHHHHHHHHhCCC-CCcEEeccccCC-
Q 007060 253 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 327 (619)
Q Consensus 253 ~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gI---THviRg~E~~~~~~~q~~l~~aLg~~-~P~~~ef~rLn~- 327 (619)
|++.|++++...++ ||.++|.|+..|...+.++++++|+. .|...+|++|..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 688888899876
Q ss_pred CCccccccc
Q 007060 328 SNTVMSKRK 336 (619)
Q Consensus 328 ~g~kLSKRk 336 (619)
+|+|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 559999995
No 46
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.41 E-value=8.4e-12 Score=132.11 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=74.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCCc-------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 158 (619)
++|==+|.|||.+||||+++.++.+.+||. ..| .++.-+||.+. ..-...+.+.|.++++.|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345557999999999999999999999993 334 56667777752 233567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+.+|..++.++ +.+...+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999987655554 66677888999999999985
No 47
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.38 E-value=1e-11 Score=139.82 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=75.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCCc-------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 158 (619)
++|--+|+|||.|||||+++.+.-+.+||. ..| .|+.-+||.+. ..-...+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999983 344 56666666542 233567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+.+|..+++++ |.+.+.+...+|+++|.+|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999987555444 77778899999999999883
No 48
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.36 E-value=6.6e-14 Score=120.80 Aligned_cols=63 Identities=38% Similarity=0.470 Sum_probs=8.2
Q ss_pred CccccCCCccccccccchhhhhhhccCCCc--ccccccccCCCCCCCCccccCCCccCCCCCCCcc
Q 007060 1 MYELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKKFANDAPVQLPEEDLFPISNFPPPEENYK 64 (619)
Q Consensus 1 ~~~~~g~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (619)
||+|||||||+|+++++|+++++.++.... .+........+.+||++||++. ++||+|||||+
T Consensus 10 il~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~k 74 (84)
T PF04557_consen 10 ILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENYK 74 (84)
T ss_dssp HHHHH-S--GGG------------------------------------------------------
T ss_pred HHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccCC
Confidence 589999999999998877754321111001 1111113356788999999997 88999999954
No 49
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.30 E-value=1.1e-11 Score=124.63 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=105.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchh-------------chHHHHHHHHHHHHHcCCCC
Q 007060 101 FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 162 (619)
Q Consensus 101 FaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------e~~e~~~~I~edL~wLGi~p 162 (619)
..|+|+|.+||||+|+.++.+.+||. +...|+..+||.+..- -...+.+.+.++++.||+.+
T Consensus 26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~ 105 (213)
T cd00672 26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLP 105 (213)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999993 4458899999997421 13455666666666666665
Q ss_pred -CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEe
Q 007060 163 -FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 241 (619)
Q Consensus 163 -d~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~ 241 (619)
+..+++ .--.| ..|....
T Consensus 106 ~d~~~rt--------------------Wh~ec-----------------------------~am~~~~------------ 124 (213)
T cd00672 106 PDVVPRV--------------------WHIEC-----------------------------SAMAMKY------------ 124 (213)
T ss_pred CCcceee--------------------hhHHH-----------------------------HHHHHHH------------
Confidence 433333 00000 0111000
Q ss_pred cCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHh-CCCCCcEE
Q 007060 242 DMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL-GLYQPYVW 320 (619)
Q Consensus 242 d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aL-g~~~P~~~ 320 (619)
|...+|=|.-|+.|+. -|+.+...| ..++ |-+.+..|
T Consensus 125 ------------------------------------lg~~~dih~~G~Dl~f---pH~~~~~a~---~~a~~g~~~~~~~ 162 (213)
T cd00672 125 ------------------------------------LGETFDIHGGGVDLIF---PHHENEIAQ---SEAATGKPFARYW 162 (213)
T ss_pred ------------------------------------cCCCccEEeecCCCCc---ChHHHHHHH---HHHHhCCCCCcEE
Confidence 0011233334444444 344444333 2332 54556778
Q ss_pred ec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCC
Q 007060 321 EY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382 (619)
Q Consensus 321 ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~ 382 (619)
.+ +.++++|.|||||+++ ..++.++.+. +.|.|+|-|++...+.+.
T Consensus 163 ~h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~~~~~~ 209 (213)
T cd00672 163 LHTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSSHYRSP 209 (213)
T ss_pred EEEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhCCcCCC
Confidence 77 4689999999999998 5789999985 999999999988776554
No 50
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.26 E-value=9.9e-11 Score=132.57 Aligned_cols=94 Identities=21% Similarity=0.232 Sum_probs=75.4
Q ss_pred EEEEeCCCCCCcCchhHHHHH-HHHHHHHHH--cCC---EEEEeeecCCc-------------hhchHHHHHHHHHHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaa-l~n~~~Ar~--~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~w 157 (619)
++|==+|.|||.||||||++. ++-+.+||. ..| .|+.-+||.+. ..-..++.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455568999999999999998 888999983 345 45555555542 12246789999999999
Q ss_pred cCCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 158 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 158 LGi~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
||+.+|..++++ +|.+...+...+|.++|.+|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999877777 788889999999999999985
No 51
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.23 E-value=9e-11 Score=124.15 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcC
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMG 159 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLG 159 (619)
+|==+|.|||.+||||+++.++.+.+||. +...|+.-+||.+.. .-.+++.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34447999999999999999999999983 344677888888632 124688999999999999
Q ss_pred CCCCC--cCCC-chhH-HHHHHHHHHHHHcCCccc
Q 007060 160 WEPFK--ITYT-SDYF-QELYELAVELIRRGHAYV 190 (619)
Q Consensus 160 i~pd~--~~~q-Sd~~-~~~ye~A~~LI~~G~AY~ 190 (619)
+.+|- ...+ +..+ +...+...+|.++|.+|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98762 2222 2222 222234459999999985
No 52
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.20 E-value=2.9e-10 Score=121.50 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeec----CCch--------------------------hchHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 146 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidD----TDp~--------------------------re~~e 146 (619)
||+|||.+|||||++.++.+.++|. +...|+.-+|| ++.. .-..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999983 33456666776 4321 11246
Q ss_pred HHHHHHHHHHHcCC--CCCC--cCCCchhHHHHHHHHHHHHHcCCcccCC
Q 007060 147 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 192 (619)
Q Consensus 147 ~~~~I~edL~wLGi--~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~ 192 (619)
|.+.|.++++.||+ +|+. .|...+|.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 78999999999999 5654 4556688889999999999999999753
No 53
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.20 E-value=6.8e-10 Score=119.24 Aligned_cols=236 Identities=17% Similarity=0.242 Sum_probs=147.1
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchhc--------------------------
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE-------------------------- 143 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re-------------------------- 143 (619)
.++++-=+.+|||.+||||++.++..+.+||. +.-.|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 45666668899999999999999999999883 44578888888875222
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHH-HHHH-HHHHcCCcccCCCCHHHHHHhhcccCCCCCC-CCChH
Q 007060 144 ----KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELY-ELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPIA 216 (619)
Q Consensus 144 ----~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~y-e~A~-~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R-~~s~e 216 (619)
.+.|...+.+.|+.||++.+-+..+..|-...+ +.+. .|-+.+... +-|...++...+..|- -.++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 346777788889999999874433333333222 3332 344445442 3445544421111110 01111
Q ss_pred HHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCC-----CCCC---ccee-cccccccceeeeCCC
Q 007060 217 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVDSIE 287 (619)
Q Consensus 217 e~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~-----~~g~---~w~i-~PTY~fa~~VdD~l~ 287 (619)
++ -|... ..+ ...|.. .--|-|++. .+|. +.|. .|++ ||+= + +.+
T Consensus 173 ~~--------cg~~~--~~v--~~~d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~r-W------~~l 226 (353)
T cd00674 173 EK--------CGKDT--TTV--EAYDAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMR-W------AIL 226 (353)
T ss_pred CC--------cCcce--eEE--EEEeCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhh-h------hhc
Confidence 10 01100 001 111111 113666652 3331 1121 3544 3332 1 246
Q ss_pred Ccceeecccccccc---hHHHHHHHH-HhCCCCCcEEeccccCCCCc-cccccccccccccCccCCCCCcccccHHHHHH
Q 007060 288 NITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 362 (619)
Q Consensus 288 gITHviRg~E~~~~---~~~q~~l~~-aLg~~~P~~~ef~rLn~~g~-kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrr 362 (619)
||+.-+-|.||..+ -..-..+++ .||...|....|+.+.+.+. |||||+|+ ..|+..+.+
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn---------------vI~~~dll~ 291 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN---------------VITPSDWLE 291 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC---------------cCCHHHHHH
Confidence 78888889999888 667777887 99998898777888777665 99999998 479999998
Q ss_pred cCCCHHHHHHHHHHcC
Q 007060 363 RGVTSTSINAFVQGIG 378 (619)
Q Consensus 363 rG~~peAI~~fl~~lG 378 (619)
. +.|++||-|+++..
T Consensus 292 ~-~~~dalR~~~l~~~ 306 (353)
T cd00674 292 V-APPEVLRYLYARRK 306 (353)
T ss_pred H-hChHHHHHHHHhCC
Confidence 8 99999999998877
No 54
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.20 E-value=1.2e-10 Score=134.47 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=73.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCCc-------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 158 (619)
++|==.|.|||.+||||+++++..+.+||. ..| .|+.-.||.+. ..-...|.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 556667999999999999999999999993 345 44444444432 223567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+.+|..+++|+ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998777776 66666777889999999986
No 55
>PLN02224 methionine-tRNA ligase
Probab=99.19 E-value=6.8e-10 Score=127.04 Aligned_cols=95 Identities=18% Similarity=0.068 Sum_probs=73.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCC-------------chhchHHHHHHHHHHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTD-------------p~re~~e~~~~I~edL~w 157 (619)
-++|==+|.|||.||||||++.++-+.+||. ..| .|+.-+||.+ |..-..+|...+.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 3667778899999999999999999999994 345 4555555554 222245677888899999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 158 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 158 LGi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|||.+|..+++++ |.....+...+|.++|.+|.
T Consensus 151 l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~ 185 (616)
T PLN02224 151 LDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYR 185 (616)
T ss_pred cCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999998777666 66666677889999999875
No 56
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=3.4e-10 Score=127.14 Aligned_cols=231 Identities=17% Similarity=0.226 Sum_probs=143.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchh----------------------------
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA---------------------------- 142 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r---------------------------- 142 (619)
.+++-=+.+|||.+||||++.++..+.+||. +.-+|+.=-||.|+-|
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999999999883 3447777778888522
Q ss_pred ----chHHHHHHHHHHHHHcCCCCCCc----CCCchhHHHHHHHHHHHH-HcCCcccCCCCHHHHHHhhcccCCCCCC-C
Q 007060 143 ----EKKEYIDHIEEIVQWMGWEPFKI----TYTSDYFQELYELAVELI-RRGHAYVDHQTPEEIKEYREKKMNSPWR-D 212 (619)
Q Consensus 143 ----e~~e~~~~I~edL~wLGi~pd~~----~~qSd~~~~~ye~A~~LI-~~G~AY~c~cs~eel~~~R~~~~~~~~R-~ 212 (619)
-.+.|.+.+.+.++.+|++++-+ .|+|..|. +.+...+ +.+... +-|...++...+..|- -
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~---~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~ 174 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYD---EAILTALENRDEIM------EILLPYLGEERQATYSPF 174 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchH---HHHHHHHHhHHHHH------HHHHHhcCCccCCCeeee
Confidence 12456777788899999998732 23333322 3332222 222221 2344443321111000 0
Q ss_pred CChHHHHHHHHHHhcccccCCceEEEE-EecCCCCCCCCCceEEEEEecCCCC-----CCCC---ccee-ccccccccee
Q 007060 213 RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCI 282 (619)
Q Consensus 213 ~s~ee~l~~fe~M~~G~~~~g~~~lR~-K~d~~~~n~~~~D~V~~R~~~~~h~-----~~g~---~w~i-~PTY~fa~~V 282 (619)
+++.++ -|+. .+..+ ..|.. .--|-|++. .+|. +.|. .|++ ||+= .
T Consensus 175 ~pic~~--------cg~~----~~~~~~~~d~~------~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~r-W---- 230 (510)
T PRK00750 175 LPICPK--------CGKV----LTTPVISYDAE------AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMR-W---- 230 (510)
T ss_pred eeeCCC--------CCcc----ceEEEEEEeCC------CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHH-H----
Confidence 111100 0111 11111 22211 113555542 2331 1221 3544 3331 1
Q ss_pred eeCCCCcceeeccccccc-chHHHHHHHH-HhCCCCCcEEeccccCCC-CccccccccccccccCccCCCCCcccccHHH
Q 007060 283 VDSIENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 359 (619)
Q Consensus 283 dD~l~gITHviRg~E~~~-~~~~q~~l~~-aLg~~~P~~~ef~rLn~~-g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~ 359 (619)
..+||+....|.||.. +...+..+++ .||...|....|+.+..+ |.|||||+++ ..++..
T Consensus 231 --~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN---------------~i~~~d 293 (510)
T PRK00750 231 --AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGN---------------VITIED 293 (510)
T ss_pred --HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCC---------------ccCHHH
Confidence 2578999999999999 9999999999 999999998889988776 9999999998 468888
Q ss_pred HHHcCCCHHHHHHHHHHc
Q 007060 360 LRRRGVTSTSINAFVQGI 377 (619)
Q Consensus 360 lrrrG~~peAI~~fl~~l 377 (619)
+.+. +.|+++|-|+..-
T Consensus 294 ~l~~-~~pd~lR~~l~~~ 310 (510)
T PRK00750 294 WLEY-APPESLRLFMFAR 310 (510)
T ss_pred HHHH-CCHHHHHHHHHhC
Confidence 8876 9999999887743
No 57
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=1.7e-09 Score=125.48 Aligned_cols=94 Identities=19% Similarity=0.119 Sum_probs=73.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------chhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~wL 158 (619)
++|==+|.|||.+||||+++.++-+.+||. ..|.=++-+..|| |..-...|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 445557899999999999999999999993 3454333333444 2334567999999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+.+|..++++ +|.+...++..+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99998765555 588888899999999999885
No 58
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=1.6e-09 Score=123.23 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=61.7
Q ss_pred CceEEEEEecCCCCCCCCcceecccccccceeeeCC-CCcceee--cccccccchHHHHHHHHHhCCCCCcE---Eeccc
Q 007060 251 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI-ENITHSL--CTLEFETRRASYFWLLHALGLYQPYV---WEYSR 324 (619)
Q Consensus 251 ~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l-~gITHvi--Rg~E~~~~~~~q~~l~~aLg~~~P~~---~ef~r 324 (619)
.|.|+-|. +|+ -.|.|=|+|...+=.- .+.+++| -|.||..+-.+-..+.++||+..+.. ..|+.
T Consensus 294 ~~~vl~ks-------DGt--~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~ 364 (562)
T PRK12451 294 PPCLIRKS-------DGA--TIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGL 364 (562)
T ss_pred CceEEEeC-------CCc--cccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeee
Confidence 57888888 553 1133334444332222 2566665 58999999888889999999864432 33677
Q ss_pred cCCCCccccccccccccccCccCCCCCcccccHHHHHHc
Q 007060 325 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 363 (619)
Q Consensus 325 Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrr 363 (619)
++.+|.+||+|+|+ ..||.+|.+.
T Consensus 365 V~~~g~kmStR~G~---------------~v~l~dLlde 388 (562)
T PRK12451 365 ILKDGKKMSTRKGR---------------VVLLEEVLEE 388 (562)
T ss_pred EecCCCCCcCCCCC---------------eeEHHHHHHH
Confidence 88899999999997 4789998875
No 59
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.04 E-value=1.6e-09 Score=127.38 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHHH--cCCEEEEeeecCCc----------------hhchHHHHHHHHHHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRa-al~n~~~Ar~--~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~w 157 (619)
++|==.|.|||.|||||+.. .+..+.+||. ..|.=++-+..||. ..-...+.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999995 5778999994 45776777777772 22235667777888999
Q ss_pred cCCCCCCcCCCc-h-hHHHHHHHHHHHHHcCCccc
Q 007060 158 MGWEPFKITYTS-D-YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 158 LGi~pd~~~~qS-d-~~~~~ye~A~~LI~~G~AY~ 190 (619)
|||.+|..++++ + |.....+...+|.++|..|.
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~ 134 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSE 134 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999765555 2 44445566678999999764
No 60
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.03 E-value=3.2e-10 Score=123.56 Aligned_cols=276 Identities=21% Similarity=0.166 Sum_probs=143.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------chhchHHHHHHHHHHHHHcC
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWMG 159 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~wLG 159 (619)
+|==.|.|||.|||||+.+.+..+.+||. ..|.=++-+..|| |..-..++.+.|.+.++.||
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 45556999999999999999999999994 4576667777776 23335678889999999999
Q ss_pred CCCCCcCCCc--hhHHHHHHHHHHHHHcCCcccC-----CCCHH-HHHHhhcccCCCC--------------CCCCChHH
Q 007060 160 WEPFKITYTS--DYFQELYELAVELIRRGHAYVD-----HQTPE-EIKEYREKKMNSP--------------WRDRPIAE 217 (619)
Q Consensus 160 i~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~c-----~cs~e-el~~~R~~~~~~~--------------~R~~s~ee 217 (619)
|++|...+++ .|-+...+...+|.++|..|.- +|... +.-..+.-.-.|| |.. ..+
T Consensus 83 I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~-~~~- 160 (391)
T PF09334_consen 83 ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGR-PLE- 160 (391)
T ss_dssp ---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSS-BEE-
T ss_pred CCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCC-Ccc-
Confidence 9999754444 4544555677899999997741 11111 0100010000011 100 000
Q ss_pred HHHHHHHHhcccc-cCC-ceEEE------EEec---------C-CC---C------------CCCCCceEEEEEecCCCC
Q 007060 218 SLKLFEDMRNGRI-EEG-KATLR------MKQD---------M-QN---D------------NFNMYDLIAYRIKFTPHP 264 (619)
Q Consensus 218 ~l~~fe~M~~G~~-~~g-~~~lR------~K~d---------~-~~---~------------n~~~~D~V~~R~~~~~h~ 264 (619)
. +++++-.. ..| ...+| |+++ . +. . +..+.|+- ++ ..-
T Consensus 161 ~----~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~---Is--~~~ 231 (391)
T PF09334_consen 161 P----EELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLS---IS--RPL 231 (391)
T ss_dssp C----CCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE----E--CTT
T ss_pred c----ccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCcee---ee--cCC
Confidence 0 00000000 000 00011 0100 0 00 0 00112222 21 001
Q ss_pred CCCCcc------------eecccccccc---------------e-eeeCCCCcceeeccccccc-chHHHHHHHHHhCCC
Q 007060 265 HAGDKW------------CIYPSYDYAH---------------C-IVDSIENITHSLCTLEFET-RRASYFWLLHALGLY 315 (619)
Q Consensus 265 ~~g~~w------------~i~PTY~fa~---------------~-VdD~l~gITHviRg~E~~~-~~~~q~~l~~aLg~~ 315 (619)
.||=++ .....|-.+. - -+|..-.+.|+| |.|-.- ++...-.++-++|++
T Consensus 232 ~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~ 310 (391)
T PF09334_consen 232 DWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLP 310 (391)
T ss_dssp SSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB-
T ss_pred CCcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccCC
Confidence 122111 1111121111 0 123334456765 777653 334445556678988
Q ss_pred CCcEEe-ccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 316 QPYVWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 316 ~P~~~e-f~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
.|...- ++++.++|.|||||.++ ......+.++ |.++++|-||+..+.-..+..++++.|.+.
T Consensus 311 lP~~i~~~~~~~~~g~K~SkS~gn---------------~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~ 374 (391)
T PF09334_consen 311 LPRRIVVHGFLTLDGEKMSKSRGN---------------VIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIER 374 (391)
T ss_dssp --SEEEEE--EEETTCCEETTTTE---------------SSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHH
T ss_pred CCCEEEeeeeEEECCeeccccCCc---------------ccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 887443 57899999999999988 3567888887 999999999999998888889999988887
Q ss_pred HHHHhhc
Q 007060 395 IREELNK 401 (619)
Q Consensus 395 ~r~~~~~ 401 (619)
+...|..
T Consensus 375 ~n~~L~~ 381 (391)
T PF09334_consen 375 VNNELAN 381 (391)
T ss_dssp HHHCCCC
T ss_pred HHHHHHH
Confidence 7766644
No 61
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.9e-09 Score=117.67 Aligned_cols=283 Identities=17% Similarity=0.133 Sum_probs=159.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------chhchHHHHHHHHHHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~w 157 (619)
-++|==-|.|||.+||||+.+.+..+.+|| +..|.=++=+..|| |..-..++.+.+.++.+|
T Consensus 7 ~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~ 86 (558)
T COG0143 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKA 86 (558)
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356667899999999999999999999999 45687777777777 233346778889999999
Q ss_pred cCCCCCCc--CCCchhHHHHHHHHHHHHHcCCcccC-----CCCHHHHH-Hhhc-ccCCCC-CC--------------CC
Q 007060 158 MGWEPFKI--TYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIK-EYRE-KKMNSP-WR--------------DR 213 (619)
Q Consensus 158 LGi~pd~~--~~qSd~~~~~ye~A~~LI~~G~AY~c-----~cs~eel~-~~R~-~~~~~~-~R--------------~~ 213 (619)
|+|+.|.. +.++.|.+...+.-.+|.++|..|.- +|.+.+.- ..|. .+ .|| |+ ..
T Consensus 87 l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g-~cp~cg~~~arGD~Ce~Cg~~~ 165 (558)
T COG0143 87 LNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG-TCPKCGGEDARGDQCENCGRTL 165 (558)
T ss_pred hCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec-cCCCcCccccCcchhhhccCcC
Confidence 99999964 34445555566777899999998752 22222211 0111 00 011 11 11
Q ss_pred ChHH-----------------------HHHHHHHHhcccccCCc-eEE---EEEecCCCCCCCCCceEEEEEecCCCCCC
Q 007060 214 PIAE-----------------------SLKLFEDMRNGRIEEGK-ATL---RMKQDMQNDNFNMYDLIAYRIKFTPHPHA 266 (619)
Q Consensus 214 s~ee-----------------------~l~~fe~M~~G~~~~g~-~~l---R~K~d~~~~n~~~~D~V~~R~~~~~h~~~ 266 (619)
.+.+ .|..|+++...-++..+ ... |...-.+.-...+.|+-+=|... .|
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~----~W 241 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDL----DW 241 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCC----CC
Confidence 1111 01122222221111110 000 00000000011244554444211 12
Q ss_pred CCcce---------------------ecccc-----cccce-eeeCCCCcceeeccccccc-chHHHHHHHHHhCCCCCc
Q 007060 267 GDKWC---------------------IYPSY-----DYAHC-IVDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPY 318 (619)
Q Consensus 267 g~~w~---------------------i~PTY-----~fa~~-VdD~l~gITHviRg~E~~~-~~~~q~~l~~aLg~~~P~ 318 (619)
|-++- +++.. +|..- -+| .-.+-|.| |.|-.. |+--.=.++.++|.+.|.
T Consensus 242 GipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfI-GKDii~FHav~wPamL~~~~~~lP~ 319 (558)
T COG0143 242 GIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFI-GKDIIRFHAVYWPAMLMAAGLPLPT 319 (558)
T ss_pred CccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEe-ccccCcchhhHHHHHHHhCCCCCCC
Confidence 21111 01100 00000 111 22234554 665543 222233455677888786
Q ss_pred EEe-ccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 319 VWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 319 ~~e-f~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
... ++.|+++|.|||||+++ ......+.++ |.++++|.|++.-.--..+..++++.|.+.+..
T Consensus 320 ~i~ahg~l~~~G~KmSKSrG~---------------~V~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~ 383 (558)
T COG0143 320 RIFAHGFLTLEGQKMSKSRGN---------------VVDPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNA 383 (558)
T ss_pred EEEeeeeEEECCccccccCCc---------------EEeHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 443 67899999999999997 3456777777 999999999987766677778999888777555
Q ss_pred Hhhc
Q 007060 398 ELNK 401 (619)
Q Consensus 398 ~~~~ 401 (619)
.+..
T Consensus 384 dL~n 387 (558)
T COG0143 384 DLAN 387 (558)
T ss_pred HHHH
Confidence 5543
No 62
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.94 E-value=1.2e-08 Score=110.86 Aligned_cols=93 Identities=27% Similarity=0.302 Sum_probs=66.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------hh-----------------------c
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------EA-----------------------E 143 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~r-----------------------e 143 (619)
+|==+|+|||.|||||+++.++-+.+||. ..|.-++.+..+|. ++ -
T Consensus 5 i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
T cd00817 5 IDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEW 84 (382)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHH
Confidence 33348999999999999999999999993 45655555555542 00 1
Q ss_pred hHHHHHHHHHHHHHcCCCCC--CcCCC--chhHHHHHHHHHHHHHcCCccc
Q 007060 144 KKEYIDHIEEIVQWMGWEPF--KITYT--SDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 144 ~~e~~~~I~edL~wLGi~pd--~~~~q--Sd~~~~~ye~A~~LI~~G~AY~ 190 (619)
..++.+.+.++++.||+..| ..+++ .+|.+.......+|.++|.+|.
T Consensus 85 ~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 85 KEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 24578889999999998644 54433 3354555566689999999987
No 63
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4.9e-08 Score=110.96 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=127.0
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-hhchHHHHHHHHHHHHHcCCCCC-CcCCCc
Q 007060 95 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPF-KITYTS 169 (619)
Q Consensus 95 g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~re~~e~~~~I~edL~wLGi~pd-~~~~qS 169 (619)
.+|+.=| +|+|||+|||||+|++++.+.+|| ..-|.=+.|.-=+|. .++..-..-++. ..|.+.. .....-
T Consensus 117 ~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~----~~~~e~~~~~~~~~ 192 (577)
T COG0018 117 KKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYE----KRGREALGLTPEPD 192 (577)
T ss_pred CEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHH----HhccccccCCCCcc
Confidence 4899999 999999999999999999999999 233433333333332 222222222222 2222211 011112
Q ss_pred hhHHHHH-HHHHHHHHcCCcccC-CCCHHH---------------------HHHhhc---------ccC---CCCCCCCC
Q 007060 170 DYFQELY-ELAVELIRRGHAYVD-HQTPEE---------------------IKEYRE---------KKM---NSPWRDRP 214 (619)
Q Consensus 170 d~~~~~y-e~A~~LI~~G~AY~c-~cs~ee---------------------l~~~R~---------~~~---~~~~R~~s 214 (619)
.|+..+| +.+++|-+.... . .-.++. |...+. ..+ .....+..
T Consensus 193 ~~lg~~y~~i~~~~~~~~~~--~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~ 270 (577)
T COG0018 193 GYLGEYYVKIAKDLEEDPGN--DEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGK 270 (577)
T ss_pred hHHHHHHHHHHHHHHhCccc--chHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhccc
Confidence 2333333 444555554332 0 001111 111111 011 11233444
Q ss_pred hHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceee-
Q 007060 215 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSL- 293 (619)
Q Consensus 215 ~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHvi- 293 (619)
+++.++.+++.-.....+|..++.+--.. ......|.|+-|. +|+ -.|-|=|+|+..+=.-.|-+.+|
T Consensus 271 ~~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt--~lY~t~DIAy~~~K~~~~~d~~Iy 339 (577)
T COG0018 271 VEKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGT--YLYFTRDIAYHLYKFERGFDKLIY 339 (577)
T ss_pred HHHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCC--eeeehhHHHHHHHHHhcCCCEEEE
Confidence 55555555443222223455544332100 2223368899888 553 12444455655544445666665
Q ss_pred -cccccccchHHHHHHHHHhCCCCCc-EE-e--ccccC-CCCccccccccccccccCccCCCCCcccccHHHHHHc
Q 007060 294 -CTLEFETRRASYFWLLHALGLYQPY-VW-E--YSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 363 (619)
Q Consensus 294 -Rg~E~~~~~~~q~~l~~aLg~~~P~-~~-e--f~rLn-~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrr 363 (619)
-|.||..+-.+-..++..+|+..+. .. | |+.++ -+|.+||||.|. ..||+.+.+.
T Consensus 340 V~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~---------------~vtl~dllde 400 (577)
T COG0018 340 VLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDE 400 (577)
T ss_pred EeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc---------------eEEHHHHHHH
Confidence 5999999988888888899986663 22 2 34444 378899999998 4688887764
No 64
>PLN02286 arginine-tRNA ligase
Probab=98.82 E-value=4.7e-08 Score=111.60 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=59.5
Q ss_pred CceEEEEEecCCCCCCCCcceecccccccceeeeCCC-Ccceee--cccccccchHHHHHHHHHhCCCCC----cE--Ee
Q 007060 251 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSL--CTLEFETRRASYFWLLHALGLYQP----YV--WE 321 (619)
Q Consensus 251 ~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~-gITHvi--Rg~E~~~~~~~q~~l~~aLg~~~P----~~--~e 321 (619)
.|.|+-|. +|+. .|.|=|+|....-... +.+++| -|.+|..+-.+-..++++||+..+ .. ..
T Consensus 297 ~~~vl~ks-------DGt~--tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~ 367 (576)
T PLN02286 297 IPLIVVKS-------DGGF--NYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVG 367 (576)
T ss_pred CceEEEEC-------CCch--hhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEe
Confidence 47788887 5531 2444455544433333 456655 488999888888889999997522 12 23
Q ss_pred ccccC-CCCccccccccccccccCccCCCCCcccccHHHHHHc
Q 007060 322 YSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 363 (619)
Q Consensus 322 f~rLn-~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrr 363 (619)
|+.++ .+|.+||||+|+ ..||++|.+.
T Consensus 368 ~g~V~~~~g~kmStR~G~---------------~v~L~dllde 395 (576)
T PLN02286 368 FGLVLGEDGKRFRTRSGE---------------VVRLVDLLDE 395 (576)
T ss_pred eccEECCCCCcccCCCCC---------------eeEHHHHHHH
Confidence 56664 688899999997 5788888874
No 65
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.77 E-value=4.7e-07 Score=107.21 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=68.1
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------ch------------hch
Q 007060 97 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------PE------------AEK 144 (619)
Q Consensus 97 v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-----------------p~------------re~ 144 (619)
.+.=. +|.|||.||||||++.++-+.+||. ..|.-++..-.+| +. .-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 44444 8999999999999999999999994 4677777655555 21 123
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 145 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 145 ~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
.++.+.|.++++.||+. |+..+++++ |.........+|.++|.+|.
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 46889999999999986 445544443 43333444568999999876
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.77 E-value=1.4e-07 Score=107.54 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=116.7
Q ss_pred eEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-hhchHHHHHHHHHHHHHcCCCC---CCcCCC
Q 007060 96 NVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEP---FKITYT 168 (619)
Q Consensus 96 ~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~re~~e~~~~I~edL~wLGi~p---d~~~~q 168 (619)
+|++=| +|+|+|+|||||+|++++.+.+|| .+-|.-+.|.-=+|. .+.......++. ..|-+. ....-.
T Consensus 113 ~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~----~~~~~~~~~~~~~~~ 188 (566)
T TIGR00456 113 KIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVE----KFGNEKLNEAVKKPD 188 (566)
T ss_pred eEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHH----HhCCccccCcccCCh
Confidence 677777 999999999999999999999999 456766777666654 333333333332 223221 011111
Q ss_pred chhHHHHHHHHHHHHHcCC------cccC---CCCHHHH---HHhhc----------c----cCC------CCCCCCChH
Q 007060 169 SDYFQELYELAVELIRRGH------AYVD---HQTPEEI---KEYRE----------K----KMN------SPWRDRPIA 216 (619)
Q Consensus 169 Sd~~~~~ye~A~~LI~~G~------AY~c---~cs~eel---~~~R~----------~----~~~------~~~R~~s~e 216 (619)
..|...|.+.++.+-+.-. .+.+ ...++.+ +..+. . .++ +.+....++
T Consensus 189 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 189 HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHH
Confidence 2344433344443321110 1100 1111111 11111 0 111 112222344
Q ss_pred HHHHHHHHHhccccc-CCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccc---cccceeeeCCCCccee
Q 007060 217 ESLKLFEDMRNGRIE-EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSY---DYAHCIVDSIENITHS 292 (619)
Q Consensus 217 e~l~~fe~M~~G~~~-~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY---~fa~~VdD~l~gITHv 292 (619)
+.++..++ .|... .|..++++ +. .+. ...|.|+-|. +| .+|| |+|....=...|.+++
T Consensus 269 ~v~~~L~~--~g~~~~~Ga~~~~~--~~-~~d-~~~~~vl~ks-------DG-----t~~Y~t~DiA~~~~k~~~~~d~i 330 (566)
T TIGR00456 269 KVLEDLKE--KGLVVEDGALWLDL--TL-FGD-KDKDRVLQKS-------DG-----TYLYLTRDIAYHLDKLERGFDKM 330 (566)
T ss_pred HHHHHHHH--CCCEEEcCCEEEEc--cc-ccC-CCCCeEEEEC-------CC-----CceechhhHHHHHHHHhcCCCEE
Confidence 44433332 23332 34334433 21 111 1147888887 55 3555 3333222122266776
Q ss_pred e--cccccccchHHHHHHHHHhCCCCCc-EEeccccCCCCccccccccc
Q 007060 293 L--CTLEFETRRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLN 338 (619)
Q Consensus 293 i--Rg~E~~~~~~~q~~l~~aLg~~~P~-~~ef~rLn~~g~kLSKRk~~ 338 (619)
| -|.||..+-.+-..++.+||++.|. ..++++..+.+.+||||+|+
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN 379 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence 5 5999999999999999999987774 44445544556899999997
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.75 E-value=2.1e-07 Score=104.67 Aligned_cols=247 Identities=17% Similarity=0.212 Sum_probs=141.2
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchhc--------------------------
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE-------------------------- 143 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re-------------------------- 143 (619)
+.+++-=+=+|||.+||||++.++..+.+||. +.-+||.=-||-||-|.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35667777789999999999999999998884 44578888888875442
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCC----cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHH----HHhhcccCCCCCC
Q 007060 144 ----KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI----KEYREKKMNSPWR 211 (619)
Q Consensus 144 ----~~e~~~~I~edL~wLGi~pd~----~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel----~~~R~~~~~~~~R 211 (619)
.+.|...+.+.|+-||++..- ..|.|..|+.....| +++ +++| ...++...+..|-
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~---L~~---------~~~I~~il~~~~~~~~~~~~~ 165 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIA---LDH---------RKEISEILNEYRTSKLEENWY 165 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHH---HHh---------HHHHHHHHHHhcCCccCCCce
Confidence 234566667778888887532 234444433333222 111 1222 2222211110000
Q ss_pred -CCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCC----CCCC----ccee-cccccccce
Q 007060 212 -DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP----HAGD----KWCI-YPSYDYAHC 281 (619)
Q Consensus 212 -~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~----~~g~----~w~i-~PTY~fa~~ 281 (619)
-.++.++ -|+... .++ ..+ . .+.|-|++. .+|. .++. .|++ ||+==.
T Consensus 166 P~~pic~~--------cGrv~~--~~~--~~~-----~--~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~RW~--- 222 (515)
T TIGR00467 166 PISVFCEN--------CGRDTT--TVN--NYD-----N--EYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPARWK--- 222 (515)
T ss_pred eeeeecCC--------cCccCc--eEE--Eec-----C--CceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhhHh---
Confidence 0111110 111100 111 111 0 124777663 3332 1111 3554 443211
Q ss_pred eeeCCCCcceeecccccccch---HHHHHHH-HHhCCCCCc--EEeccccCCCCccccccccccccccCccCCCCCcccc
Q 007060 282 IVDSIENITHSLCTLEFETRR---ASYFWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLM 355 (619)
Q Consensus 282 VdD~l~gITHviRg~E~~~~~---~~q~~l~-~aLg~~~P~--~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~ 355 (619)
..|||-=--|.||..+. .....++ ++||.+.|. .+++-+|..+|.|||||+|+ ..
T Consensus 223 ----~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~i 283 (515)
T TIGR00467 223 ----IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VI 283 (515)
T ss_pred ----hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------Cc
Confidence 35666666788888755 2333455 589887775 44455677788899999998 57
Q ss_pred cHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHH
Q 007060 356 TLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 398 (619)
Q Consensus 356 Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~ 398 (619)
|++++.+. +.|+++|-|+++-...+.-. ++++.| ++...+
T Consensus 284 tl~dll~~-~~pdalR~~~l~~~~~~~ld-Fd~~~l-~~~dey 323 (515)
T TIGR00467 284 SVKDVLEV-YTPEITRFLFARTKPEFHIS-FDLDVI-KLYEDY 323 (515)
T ss_pred cHHHHHHH-cCHHHHHHHHhccCCCCCCc-CCHHHH-HHHHHH
Confidence 99999988 99999999977766655443 665555 444433
No 68
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.64 E-value=2.1e-07 Score=97.42 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=118.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CchhchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 174 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~ 174 (619)
.|||.|||||.-.|+.++...+..|..+++.|.|. +..++..++...+..++.++|++|++ +..||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 48899999999999999999998899999999998 34567778888899999999999964 67899987 4
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceE
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 254 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V 254 (619)
+++.+- .+.|.|+..+++.. ..+ .++ ..+ + .+.+.
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~f----k~~------------~~~----~----------~~~~~------ 120 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TGF----KDK------------SAQ----G----------ESVNI------ 120 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cch----hhh------------hcc----C----------CCCcc------
Confidence 555543 36799998888532 111 110 000 0 00000
Q ss_pred EEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEEec--ccc-
Q 007060 255 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL- 325 (619)
Q Consensus 255 ~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~ef--~rL- 325 (619)
.. -.||.-.-|.. .+.+.++|..|.|-..+-..-.-+...++ +..|..... .++
T Consensus 121 -g~-------------~~YP~lqaaDi---l~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 121 -GL-------------LTYPVLQAADI---LLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred -hh-------------hcchHHHHhhh---hhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 00 11443333322 23455888999999988888888888888 667765554 443
Q ss_pred CCCC--cccccccc
Q 007060 326 NVSN--TVMSKRKL 337 (619)
Q Consensus 326 n~~g--~kLSKRk~ 337 (619)
.++| +|||||.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5665 59999987
No 69
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.63 E-value=1.7e-06 Score=103.35 Aligned_cols=93 Identities=27% Similarity=0.315 Sum_probs=69.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCch------------------h--------------c
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------A--------------E 143 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~------------------r--------------e 143 (619)
++==||.+||.||||||.+.++-+.+|| ...|.-+|..-.+|-. + -
T Consensus 37 i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~ 116 (861)
T TIGR00422 37 IDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEW 116 (861)
T ss_pred EEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHH
Confidence 3334899999999999999999999999 4578888888888720 0 0
Q ss_pred hHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 144 KKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 144 ~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
..+|...|.+.++.||+. |+..+++.| |.........+|-++|+.|.
T Consensus 117 ~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 117 KEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 356788999999999965 555555544 33333344568999999886
No 70
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.57 E-value=3.9e-07 Score=98.24 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=38.1
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 139 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD 139 (619)
+.+|++=| +|+|+|+|||||+|++++...+|| .+.|.-+.|.--+|
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyig 67 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIG 67 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEB
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEEC
Confidence 45799999 999999999999999999999999 67888888877776
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.36 E-value=2.1e-06 Score=92.34 Aligned_cols=244 Identities=19% Similarity=0.239 Sum_probs=116.3
Q ss_pred HHHHHHHhhh--cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCchhc------------
Q 007060 83 KEVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------ 143 (619)
Q Consensus 83 ~~~~~~~~~~--~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re------------ 143 (619)
.++++++.+. .++.+++-=.=+|+|..||||+|-++..++.+|. ..-++|+--||.|+-|.
T Consensus 9 ~~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ 88 (360)
T PF01921_consen 9 DEIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEK 88 (360)
T ss_dssp HHHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCC
T ss_pred HHHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHH
Confidence 4455544333 3467888888999999999999999999999884 23489999999996442
Q ss_pred -------------------hHHHHHHHHHHHHHcCCCCCC----cCCCchhHHHHHHHHHHHHHc-CCcccCCCCHHHHH
Q 007060 144 -------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIK 199 (619)
Q Consensus 144 -------------------~~e~~~~I~edL~wLGi~pd~----~~~qSd~~~~~ye~A~~LI~~-G~AY~c~cs~eel~ 199 (619)
.+.|...+.+.|+.||+++.- ..|+|..|+.....|. ++ ... .+-|.
T Consensus 89 ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL---~~~~~I------~~Il~ 159 (360)
T PF01921_consen 89 YLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTAL---ENRDEI------REILN 159 (360)
T ss_dssp CTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHH---HTHHHH------HHHHH
T ss_pred hcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHH---HhHHHH------HHHHH
Confidence 246777788889999998642 3355555443332221 11 000 01222
Q ss_pred HhhcccCCCCCCC-CChHHHHHHHHHHhcccccCCceEEEE-EecCCCCCCCCCceEEEEEecCCCC-----CCCC---c
Q 007060 200 EYREKKMNSPWRD-RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---K 269 (619)
Q Consensus 200 ~~R~~~~~~~~R~-~s~ee~l~~fe~M~~G~~~~g~~~lR~-K~d~~~~n~~~~D~V~~R~~~~~h~-----~~g~---~ 269 (619)
..++...+..|-- .++.++ -|+. .+..+ ..|. -..-|-|++...+|. +.|. .
T Consensus 160 ~~~~~~~~~~y~Pf~piC~~--------cGri----~tt~v~~~d~------~~~~v~Y~c~~cG~~g~~~i~~g~gKL~ 221 (360)
T PF01921_consen 160 EYRGRERPETYSPFLPICEK--------CGRI----DTTEVTEYDP------EGGTVTYRCEECGHEGEVDITGGNGKLQ 221 (360)
T ss_dssp HHHHHT--TT--SEEEEETT--------TEE------EEEEEEE--------SSSEEEEE--TTS---EEETTTT-EEE-
T ss_pred HhcCcCCCCCeeeeeeeccc--------cCCc----ccceeeEeec------CCCEEEEEecCCCCEEEEecCCCccccc
Confidence 3332111111100 011100 0111 01111 1111 145688888555553 2221 3
Q ss_pred cee-cccccccceeeeCCCCcceeeccccccc---chHHHHHHH-HHhCCCCCcEEeccccCCCCc-ccccccccccccc
Q 007060 270 WCI-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTN 343 (619)
Q Consensus 270 w~i-~PTY~fa~~VdD~l~gITHviRg~E~~~---~~~~q~~l~-~aLg~~~P~~~ef~rLn~~g~-kLSKRk~~~lV~~ 343 (619)
|++ ||+= . +.+||+.=--|+||.+ |......|+ +.||..+|...-|....++|. |||||+|+
T Consensus 222 WkvDW~mR-W------~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~----- 289 (360)
T PF01921_consen 222 WKVDWPMR-W------AALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN----- 289 (360)
T ss_dssp HHHHHHHH-H------HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES----------------
T ss_pred CCCcChhh-h------hhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC-----
Confidence 544 3331 1 2467777778999998 888888999 788999999888887666655 99999998
Q ss_pred CccCCCCCcccccHHHHHHcCCCHHHHHHHHHH
Q 007060 344 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 376 (619)
Q Consensus 344 g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~ 376 (619)
.+|++...+- ++||.|+-|+..
T Consensus 290 ----------~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 290 ----------GITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp -------------HHHHHTT-S-HHHHHHHHHC
T ss_pred ----------ccCHHHHHHh-cCHHHHHHHHcc
Confidence 4799999975 788888888775
No 72
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.4e-05 Score=84.65 Aligned_cols=274 Identities=19% Similarity=0.187 Sum_probs=146.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc------------hhchHHHHHHHHHHH----HHcCCCCCCc
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP------------EAEKKEYIDHIEEIV----QWMGWEPFKI 165 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp------------~re~~e~~~~I~edL----~wLGi~pd~~ 165 (619)
-||-..||||+.++++.+.+||. ..|.-+.=.+.||- .+...++.+.|-... +-+|+..+..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 46788999999999999999994 56887777888882 122345555554443 4568888776
Q ss_pred CCCch--hHHHHHHHHHHHHHcCCccc-------C-----CCCHHHHHHhhcc---------cCCCCCCCCChHHH----
Q 007060 166 TYTSD--YFQELYELAVELIRRGHAYV-------D-----HQTPEEIKEYREK---------KMNSPWRDRPIAES---- 218 (619)
Q Consensus 166 ~~qSd--~~~~~ye~A~~LI~~G~AY~-------c-----~cs~eel~~~R~~---------~~~~~~R~~s~ee~---- 218 (619)
.+++| |.....++-..+.++|..|. | |-.+..+.+.-.+ +-++.||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 55554 55556677778888898875 2 2222222221110 00111111 110
Q ss_pred HHHHHHHhcccccCCceEEEEEecC-------CCCCCCCCceEEEEEecCCC---CCCCCc------c----------ee
Q 007060 219 LKLFEDMRNGRIEEGKATLRMKQDM-------QNDNFNMYDLIAYRIKFTPH---PHAGDK------W----------CI 272 (619)
Q Consensus 219 l~~fe~M~~G~~~~g~~~lR~K~d~-------~~~n~~~~D~V~~R~~~~~h---~~~g~~------w----------~i 272 (619)
|..|.+-....+...+ |+-.+. +--...+.|+-+-|-+-.-| |.-||+ | .+
T Consensus 206 LSkfqk~l~d~lrkNP---~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig 282 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNP---RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIG 282 (578)
T ss_pred HHhhhhHHHHHHhcCC---CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhc
Confidence 1111111000000000 000000 00011245655555321111 222222 2 12
Q ss_pred ccc--ccccceeeeCCCCcceeecccccccchHHH-HHHHHHhCCCCCcEE-eccccCCCCccccccccccccccCccCC
Q 007060 273 YPS--YDYAHCIVDSIENITHSLCTLEFETRRASY-FWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDG 348 (619)
Q Consensus 273 ~PT--Y~fa~~VdD~l~gITHviRg~E~~~~~~~q-~~l~~aLg~~~P~~~-ef~rLn~~g~kLSKRk~~~lV~~g~v~g 348 (619)
||- -+.-..+.---=.-.|+| |+|-+--...| -.++=+.|++.|..+ -|||...+|.||||+.|+.+
T Consensus 283 ~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv-------- 353 (578)
T KOG0436|consen 283 YPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV-------- 353 (578)
T ss_pred CCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc--------
Confidence 331 001111100001123665 66655333322 123345589888754 47899999999999999843
Q ss_pred CCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhh
Q 007060 349 WDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 400 (619)
Q Consensus 349 WDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~ 400 (619)
||+ .|.++ |.+.++|.|++.-|.-..+..++.++|.......+.
T Consensus 354 --dP~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La 397 (578)
T KOG0436|consen 354 --DPF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLA 397 (578)
T ss_pred --CHH-----HHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHH
Confidence 453 45544 889999999999998888888888887766644443
No 73
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.00 E-value=0.0001 Score=80.12 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=114.0
Q ss_pred eecCcHHHHHHHhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc-------hhchHHHHH
Q 007060 78 ICCNTKEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYID 149 (619)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp-------~re~~e~~~ 149 (619)
......+.+.++++. ..-.+.|=|.|| |.|||||.-+ +.++..-...|..+++-|-|.-. ..+..++..
T Consensus 49 ~~hrd~d~il~~~~~~~~~~iytG~~PS--G~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~ 125 (368)
T PRK12285 49 FGHRDYDKILEAYRNGKPFAVYTGFMPS--GPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAY 125 (368)
T ss_pred eecCCHHHHHHHHhcCCCeEEEEccCCC--CCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHH
Confidence 444445555555544 233566666655 8999999864 55555545567777777776521 123345555
Q ss_pred HHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhc
Q 007060 150 HIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 150 ~I~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
.+..++-.+|++|++ ++.||++.+ +++.+-.| .|.+|-.+++.. .++.. +. ++
T Consensus 126 ~~~~~~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~~-----~~--~~-------- 180 (368)
T PRK12285 126 EYILDLIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFTG-----ET--NI-------- 180 (368)
T ss_pred HHHHHHHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCCC-----CC--ch--------
Confidence 577788899999985 789999975 77877666 566666666532 11100 00 00
Q ss_pred ccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceee---eCCCCcceeecccccccchHH
Q 007060 228 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRAS 304 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~Vd---D~l~gITHviRg~E~~~~~~~ 304 (619)
| -..||.-.-|.++- |.-..-++|.+|.|-..+-..
T Consensus 181 g-----------------------------------------~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~l 219 (368)
T PRK12285 181 G-----------------------------------------HIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRL 219 (368)
T ss_pred h-----------------------------------------hhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHH
Confidence 0 01144443333321 111245678889887765555
Q ss_pred HHHHHHHh----CCCCCcEEecccc-CCCCcccccccc
Q 007060 305 YFWLLHAL----GLYQPYVWEYSRL-NVSNTVMSKRKL 337 (619)
Q Consensus 305 q~~l~~aL----g~~~P~~~ef~rL-n~~g~kLSKRk~ 337 (619)
-.-+...| |+..|...+...+ .++|+|||||..
T Consensus 220 tRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~ 257 (368)
T PRK12285 220 TRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKP 257 (368)
T ss_pred HHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCC
Confidence 55566666 8888865544444 788999999984
No 74
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.97 E-value=8.3e-05 Score=79.68 Aligned_cols=170 Identities=23% Similarity=0.280 Sum_probs=106.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cch----hchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp~----re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 173 (619)
.|||.|||||.-.++.++..- +.|..+++=|-|. ++. .........+..++-.+|++|++ +..||++.
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 578999999999999998777 5666666656654 111 12344555566677789999985 78999986
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCce
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 253 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~ 253 (619)
.+++.+-.| .|++|-.+++.. ..+ .+++. ..+.+
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~~----k~k~~-----------------------------~~~~~---- 121 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQF----KDKSQ-----------------------------AENVP---- 121 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cCc----chhcc-----------------------------CCCCC----
Confidence 466665544 577777766432 111 11100 00000
Q ss_pred EEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEEe--c-cc
Q 007060 254 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE--Y-SR 324 (619)
Q Consensus 254 V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~e--f-~r 324 (619)
.| ...||...-|.++ +.+.++|..|.|-..+-..-.-+.+.++ +..|.... + ++
T Consensus 122 ------------~g--~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 122 ------------IG--LFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred ------------ch--hhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 00 1236766655444 5578899999988777666666777777 55565433 2 23
Q ss_pred c-CCCCccccccccc
Q 007060 325 L-NVSNTVMSKRKLN 338 (619)
Q Consensus 325 L-n~~g~kLSKRk~~ 338 (619)
| .++|+|||||..+
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 3 5667899999874
No 75
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.95 E-value=1.7e-05 Score=94.17 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=71.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~wL 158 (619)
+++==+|.|||.|||||+++.++-+.+||. ..|.-++.+-.+|. ..-..++.+.|.+.++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999999994 46776666666552 223467899999999999
Q ss_pred CCC--CCCcCC--CchhHHHHHHHHHHHHHcCCccc
Q 007060 159 GWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~--pd~~~~--qSd~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+. |+..+. ..+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 444433 34566666666789999999886
No 76
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.0002 Score=79.77 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=56.7
Q ss_pred CCcceeecccccccchHHHHHHHHH----hCCCCCcEEeccccCCC-CccccccccccccccCccCCCCCcccccHHHHH
Q 007060 287 ENITHSLCTLEFETRRASYFWLLHA----LGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 361 (619)
Q Consensus 287 ~gITHviRg~E~~~~~~~q~~l~~a----Lg~~~P~~~ef~rLn~~-g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lr 361 (619)
.|||-=-=|+||.++..+|.-.+.. +|+.+|...-|-...+. +.+||+|+|+ ..|+++..
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHH
Confidence 4566656799999999998877764 47777765555554444 4999999998 47999999
Q ss_pred HcCCCHHHHHHHHHHcCcc
Q 007060 362 RRGVTSTSINAFVQGIGIS 380 (619)
Q Consensus 362 rrG~~peAI~~fl~~lG~s 380 (619)
+- ++||.++-|+..--.+
T Consensus 293 ev-~~pE~lry~~~r~kP~ 310 (521)
T COG1384 293 EV-APPEVLRYLIARTKPN 310 (521)
T ss_pred Hh-cCHhHeeeeeeecCCC
Confidence 75 6788777766554333
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.86 E-value=3.9e-05 Score=91.52 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~wL 158 (619)
+++=-+|.|||.||||||++.++.+.+||. ..|.-++..-.+|. ..-..++++.+.+.++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566669999999999999999999999994 46777776666662 222467899999999999
Q ss_pred CCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 159 GWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+. |+..+.+++ |.........+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 976 555544444 33333344469999999886
No 78
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0001 Score=78.18 Aligned_cols=183 Identities=20% Similarity=0.211 Sum_probs=114.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCC-------c-hhchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-------p-~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 173 (619)
-|||.|||||.-.|+.||.......+.|+.=|-|.- + +.....+...+..++=.+||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 489999999999999999998877677777777752 2 234556666666677788999986 789999865
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCce
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 253 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~ 253 (619)
++++|-.| -|..+--+++.. .++. +..+ . .++ .+.
T Consensus 93 -~~eLa~~l-------~~~~~~gel~r~--~~fK----------------dk~~-~--~~~-----~~~----------- 127 (314)
T COG0180 93 -HAELAWLL-------SCVTNFGELERM--TQFK----------------DKSA-K--KGE-----SIP----------- 127 (314)
T ss_pred -HHHHHHHH-------HccCcHHHHHhh--cCcc----------------hhhh-c--ccc-----ccc-----------
Confidence 77777544 566666666543 1110 0000 0 000 000
Q ss_pred EEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEEecc--c-
Q 007060 254 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEYS--R- 324 (619)
Q Consensus 254 V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~ef~--r- 324 (619)
.| .-.||.-.-|..+ +-+-++|=.|.|-..+-....-|.+.++ +..|.....- +
T Consensus 128 ------------~G--l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 128 ------------IG--LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred ------------cc--chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 0125555444332 2244677789888877777777777776 4555433322 4
Q ss_pred cCCCC-ccccccccccccccCccCCCCCcc
Q 007060 325 LNVSN-TVMSKRKLNFLVTNKYVDGWDDPC 353 (619)
Q Consensus 325 Ln~~g-~kLSKRk~~~lV~~g~v~gWDDPR 353 (619)
..++| .|||||..+. .+.=+|||.
T Consensus 191 ~gL~g~~KMSkS~~ns-----~I~L~D~~~ 215 (314)
T COG0180 191 PGLDGPGKMSKSDPNS-----AIFLLDDPK 215 (314)
T ss_pred cCCCCCCcccccCCCC-----eeeccCCHH
Confidence 36788 8999999882 333456664
No 79
>PLN02563 aminoacyl-tRNA ligase
Probab=97.73 E-value=9e-05 Score=89.32 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCc-CchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----c------------hhchHHHHHHHHHHHHH
Q 007060 97 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----P------------EAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 97 v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----p------------~re~~e~~~~I~edL~w 157 (619)
+++=-+|.|||. |||||+++.++.+.+||. ..|.-+|.+-.+| | .....++++.+.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 566667999996 999999999999999994 5687788777777 2 22346788999999999
Q ss_pred cCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 158 MGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 158 LGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
||+. |+..+.+++ |.........+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9954 666554444 44444455678999999986
No 80
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.69 E-value=0.00065 Score=70.89 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=128.4
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----------hchHHHHHHHHHHHHHcCCC--CC-
Q 007060 104 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PF- 163 (619)
Q Consensus 104 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----------re~~e~~~~I~edL~wLGi~--pd- 163 (619)
.||| .|||||.-.++ ++..-...|..+++=|-|. ||. .+.......+..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 4789 99999998765 4443344465666656552 342 12345667788889999996 66
Q ss_pred -CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEec
Q 007060 164 -KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 242 (619)
Q Consensus 164 -~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d 242 (619)
.+..||+..+.+ +...+++ +.|+++..++...-. ..+ ++..+
T Consensus 87 ~~i~~~s~~~~~l--~~~~~l~----l~~~~~~~~l~~~~~-----------~k~------r~~~~-------------- 129 (269)
T cd00805 87 AKFVNNSDWLLSL--YTLDFLR----LGKHFTVNRMLRRDA-----------VKV------RLEEE-------------- 129 (269)
T ss_pred eEEEEchHhhccC--CHHHHHH----HHhhCcHHHHHHHHH-----------HHH------HHhcC--------------
Confidence 478999987652 2222232 467788777754311 000 00000
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEec
Q 007060 243 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 322 (619)
Q Consensus 243 ~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef 322 (619)
.+.++ | --.||...-|..+ +.+.++++.|.|-..+-..-.-+.+.++...|....+
T Consensus 130 ---~~~~~----------------~--~~~YP~lQaaDi~---~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 130 ---EGISF----------------S--EFIYPLLQAYDFV---YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred ---CCCcH----------------H--HHHHHHHHHhhHH---HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 00000 0 0124543333221 2345889999998888877777888888887876666
Q ss_pred ccc-CCCCccccccccccc-cccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHh
Q 007060 323 SRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 399 (619)
Q Consensus 323 ~rL-n~~g~kLSKRk~~~l-V~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 399 (619)
+.| +++|.|||||..+.. | .==|+| .+|....++-+++. +.+|+..+-. .+...++++...+.
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i-----~l~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~------~~~~~~eel~~~~~ 250 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWD-----PVLDSP--YDVYQKIRNAFDPD-VLEFLKLFTF------LDYEEIEELEEEHA 250 (269)
T ss_pred ccccCCCCCcccCCCCCcccc-----cCCCCH--HHHHHHHHcCCcHH-HHHHHHHHHc------CCHHHHHHHHHHHh
Confidence 665 789999999997642 1 112444 46777777777774 3555543322 12334555555554
No 81
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.66 E-value=0.00011 Score=87.94 Aligned_cols=96 Identities=22% Similarity=0.207 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc-----------------------h----------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP-----------------------E---------- 141 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp-----------------------~---------- 141 (619)
+++=-||.|||.||||||++..+-+.+||. ..|..++..-..|- .
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 566669999999999999999999999994 56777776655541 0
Q ss_pred hchHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCcccCC
Q 007060 142 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVDH 192 (619)
Q Consensus 142 re~~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c~ 192 (619)
.-..++++.+.+.++.||+ +|+..+.+.+ |.........+|.++|++|...
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~ 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecc
Confidence 1123578889999999999 6777665555 3223333446899999999743
No 82
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.63 E-value=0.00012 Score=87.89 Aligned_cols=89 Identities=27% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCch---------h---------c--------------hHHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A---------E--------------KKEY 147 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r---------e--------------~~e~ 147 (619)
||.+||.||||||.+.++-+.+||. ..|.-+|..-.||-. + . ..+|
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999994 568888888887721 1 0 3567
Q ss_pred HHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 148 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 148 ~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
...|.+.++.||+. |+..+++.| |-........+|.++|..|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 89999999999976 555555544 33334455578999999886
No 83
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.63 E-value=0.00012 Score=88.83 Aligned_cols=94 Identities=27% Similarity=0.286 Sum_probs=71.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----h-----h----c------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----E-----A----E------------------ 143 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----~-----r----e------------------ 143 (619)
+++==||.|||.||||||++.++-+.+||. ..|.-++.+-.+|- . + .
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 445558999999999999999999999994 56888888877772 1 1 0
Q ss_pred --hHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 144 --KKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 144 --~~e~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
..+|...|.+.++.||+. |+..+++. +|.........+|.++|++|.
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 257788899999999965 55655444 455555566779999999886
No 84
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.62 E-value=0.0011 Score=71.23 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=112.5
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc--hhchHHHHHHHHHH
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP--EAEKKEYIDHIEEI 154 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp--~re~~e~~~~I~ed 154 (619)
+.+-|++.++.. .+.+.=..=.|||.|||||.- ++.++..-...|..+++=|-|. |+ ..........+..+
T Consensus 17 ~~~el~~~l~~~-~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~ 94 (329)
T PRK08560 17 TEEELRELLESK-EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94 (329)
T ss_pred CHHHHHHHHhCC-CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHH
Confidence 466777777532 332333455677999999976 5566666555677776666664 21 22345566677788
Q ss_pred HHHcCCCCCC--cCCCchhHHH--HHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccc
Q 007060 155 VQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 230 (619)
Q Consensus 155 L~wLGi~pd~--~~~qSd~~~~--~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~ 230 (619)
+..+|++|++ +..||+.... |+..+..| .|.++-.++...... + |+.
T Consensus 95 ~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~~-~---------------------~~~ 145 (329)
T PRK08560 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMTI-M---------------------GRR 145 (329)
T ss_pred HHHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhhh-h---------------------ccc
Confidence 8889999974 6789986532 33333333 456665555432100 0 000
Q ss_pred cCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHH
Q 007060 231 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 231 ~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~ 310 (619)
..+.+ .| --.||.-.-|..+ +.+.++++.|.|-..+-..-.-+..
T Consensus 146 ------------~~~~~------------------~g--~l~YP~lqaaDil---~~~ad~vpvG~DQ~~h~~l~Rdia~ 190 (329)
T PRK08560 146 ------------MEEPD------------------VS--KLVYPLMQVADIF---YLDVDIAVGGMDQRKIHMLAREVLP 190 (329)
T ss_pred ------------CCCCC------------------HH--HHHHHHHHHHHHH---HhCCCEEEechhHHHHHHHHHHhhH
Confidence 00000 00 0125555444333 4578899999888776666666677
Q ss_pred HhCCCCCcEEecccc-CCCCc--cccccc
Q 007060 311 ALGLYQPYVWEYSRL-NVSNT--VMSKRK 336 (619)
Q Consensus 311 aLg~~~P~~~ef~rL-n~~g~--kLSKRk 336 (619)
.++...|.......| +++|. |||||.
T Consensus 191 ~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 191 KLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred hcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 888877866665554 67776 999998
No 85
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00079 Score=72.40 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=100.9
Q ss_pred CCCCcCchhHHHHHHHHHHHH-HHcCCEEEEeeecC-------CchhchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLA-KERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~A-r~~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 173 (619)
.|||.|||||.-.++-+|..- ..++..+++=|-|. ||+ +..++...+..++-.+|++|++ +++||++-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 478999999999999998655 45665555545553 222 2334455566677789999985 789999744
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCce
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 253 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~ 253 (619)
..+++-. ..|.++-.+|... ..+ .+....-..+ |. ...+. ..
T Consensus 90 -~~eL~~i-------l~~~t~~g~L~R~--~~~---------K~k~~~~~~~--~~--------------~~~~~---~~ 131 (332)
T PRK12556 90 -IFELAWI-------LSCLTPKGLMNRA--HAY---------KAKVDQNKEA--GL--------------DLDAG---VN 131 (332)
T ss_pred -HHHHHHH-------HHccchHHHHHhc--cHH---------HHHHhhhhhh--cc--------------ccCCC---Cc
Confidence 3444432 3577666656432 111 0000000000 00 00000 00
Q ss_pred EEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEE--eccc-
Q 007060 254 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW--EYSR- 324 (619)
Q Consensus 254 V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~--ef~r- 324 (619)
.| ...||.-.=|-.+ +.+.++|.-|.|-..+-..-.-+...++ +..|... .+++
T Consensus 132 ------------~g--ll~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~ 194 (332)
T PRK12556 132 ------------MG--LYTYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAI 194 (332)
T ss_pred ------------ch--hhhchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceecccccccc
Confidence 01 1236666555333 5578899999988766665555656555 3445433 1333
Q ss_pred c-CCCCccccccccc
Q 007060 325 L-NVSNTVMSKRKLN 338 (619)
Q Consensus 325 L-n~~g~kLSKRk~~ 338 (619)
+ .++|.|||||..+
T Consensus 195 l~gLdg~KMSKS~~n 209 (332)
T PRK12556 195 LPGLDGRKMSKSYGN 209 (332)
T ss_pred ccCCCCCCCCCCCCC
Confidence 3 6788999999864
No 86
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.55 E-value=0.00019 Score=86.42 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=69.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------------chh-------chH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------PEA-------EKK 145 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------------p~r-------e~~ 145 (619)
+++==||.+||.||||||++.++-+.+||. ..|.-++.+-.+| ++. -..
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 445558999999999999999999999994 4577666555444 221 234
Q ss_pred HHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 146 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 146 e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
++.+.+.++++.||+ +|+..+++.+ |-........+|.++|..|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 568889999999999 7887665554 43344455678999999887
No 87
>PLN02943 aminoacyl-tRNA ligase
Probab=97.50 E-value=0.00031 Score=85.09 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=71.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc----h-----h--------------c--------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----E-----A--------------E-------- 143 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp----~-----r--------------e-------- 143 (619)
+++=-||.+||.||||||++..+-+.+|| ...|.-+|.+-.+|. . + +
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 55556899999999999999999999999 457888888877772 1 0 0
Q ss_pred -hHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 144 -KKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 144 -~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
..+|...|.+.++.||+. |+..+++.+ |.........+|-++|++|.
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 146778999999999984 666655554 43344455568999999886
No 88
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.50 E-value=0.00019 Score=87.59 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=70.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----h-----h-----------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----E-----A----------------------- 142 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----~-----r----------------------- 142 (619)
+++==||+|||.|||||+++.++-+.+||. ..|.-+|.+-.+|. . +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 444558999999999999999999999994 56887887777772 1 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 143 -EKKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 143 -e~~e~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
-..++.+.|.+.++.||+. |+..+++. +|.........+|.++|..|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0245778899999999965 55554443 454444555679999999887
No 89
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.50 E-value=0.00025 Score=85.98 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------------chhc-------h
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PEAE-------K 144 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-----------------------p~re-------~ 144 (619)
+++==||.+||.||||||.+.++-+.++|. ..|.-++.+-.+| |+.. .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 444458999999999999999999999994 4566565554444 2111 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 145 KEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 145 ~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
.++++.+.+.++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567788999999999 7887666554 33333344568999999876
No 90
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00012 Score=86.29 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecC-------------CchhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDT-------------Dp~re~~e~~~~I~edL~wL 158 (619)
.++=-=|-|||.||+||+|+..+.+.+||. ..| -|=+=+|-+ ||..-...+++.+.+.|+.|
T Consensus 37 yvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~l 116 (814)
T COG0495 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSL 116 (814)
T ss_pred EEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 445556999999999999999999999993 234 333444443 56666788999999999999
Q ss_pred CCC--CCCcCCCchhHHHHHHHH----HHHHHcCCccc
Q 007060 159 GWE--PFKITYTSDYFQELYELA----VELIRRGHAYV 190 (619)
Q Consensus 159 Gi~--pd~~~~qSd~~~~~ye~A----~~LI~~G~AY~ 190 (619)
|+. |+....++|= .||.+. .+|-++|+||.
T Consensus 117 G~siDW~Ref~T~Dp--~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 117 GFSIDWRREFATCDP--EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CCccccccceecCCc--cHHHHHHHHHHHHHHCCCEEe
Confidence 986 5554333331 144443 58999999996
No 91
>PLN02381 valyl-tRNA synthetase
Probab=97.45 E-value=0.0003 Score=85.88 Aligned_cols=95 Identities=28% Similarity=0.341 Sum_probs=70.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------hh-----------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------EA----------------------- 142 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~r----------------------- 142 (619)
+++==||++||.||||||++..+-+.+||. ..|.-++..-.+|- ++
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 455559999999999999999999999994 56877777777762 10
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCcccC
Q 007060 143 -EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYVD 191 (619)
Q Consensus 143 -e~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c 191 (619)
-..+|...|.+.++.||+. |+..+++.+ |.........+|.++|+.|..
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 0246788889999999965 666666555 333334445689999998864
No 92
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.40 E-value=0.00038 Score=84.51 Aligned_cols=94 Identities=24% Similarity=0.288 Sum_probs=69.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------h------------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------E------------------------ 141 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~------------------------ 141 (619)
+++==||.|||.||+|||++..+-+.+||. ..|.-+++.=..|- +
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 444448999999999999999999999994 56887777666651 0
Q ss_pred hchHHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 142 AEKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 142 re~~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
....+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|++|.
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 123467888999999999 56777666655 33333334469999999886
No 93
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.40 E-value=0.00042 Score=79.97 Aligned_cols=93 Identities=26% Similarity=0.292 Sum_probs=62.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------h------------------------h
Q 007060 98 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------E------------------------A 142 (619)
Q Consensus 98 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~------------------------r 142 (619)
++==||.+||.||+|||++..+-+.+||. ..|..++..=..|- + .
T Consensus 27 i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~ 106 (601)
T PF00133_consen 27 IHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECRE 106 (601)
T ss_dssp EEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHH
T ss_pred EEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcc
Confidence 33348999999999999999999999993 56766665544441 0 0
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcCCC--chhHHHHHHHHHHHHHcCCccc
Q 007060 143 EKKEYIDHIEEIVQWMGWE--PFKITYT--SDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 143 e~~e~~~~I~edL~wLGi~--pd~~~~q--Sd~~~~~ye~A~~LI~~G~AY~ 190 (619)
-..++.+.|.++++.||+. |+..+++ .+|-........+|.++|..|.
T Consensus 107 ~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 107 WAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 1346788899999999974 6665444 3444444455679999999996
No 94
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.38 E-value=0.00042 Score=85.32 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=70.4
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------hh------------------------ch
Q 007060 100 RFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------EA------------------------EK 144 (619)
Q Consensus 100 RFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~r------------------------e~ 144 (619)
==||.+||.||||||.+..+-+.+||. ..|.-+++.-.+|- ++ ..
T Consensus 108 ~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~ 187 (1205)
T PTZ00427 108 DGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIV 187 (1205)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHH
Confidence 338999999999999999999999994 57888888888771 11 02
Q ss_pred HHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 145 KEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 145 ~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
.+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|..|.
T Consensus 188 ~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 188 LKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 356788899999999 78887766655 44444455578999999886
No 95
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.35 E-value=0.00076 Score=72.52 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=59.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC---C---chhchHHHHHHHHHHHHHcCCCCCC--cCC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT---N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITY 167 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT---D---p~re~~e~~~~I~edL~wLGi~pd~--~~~ 167 (619)
.|.|=+. |||.+||||.-.++.++..-...+..+++--|+. + ...+..++...+..++-.+|++|++ ++.
T Consensus 4 ~v~sG~~--PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 4 IILTGDR--PTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred EEEEeeC--CCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 3455555 5699999999999999966665555555533332 1 1123345556666777789999985 678
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHH
Q 007060 168 TSDYFQELYELAVELIRRGHAYVDHQTPEEI 198 (619)
Q Consensus 168 qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel 198 (619)
||++.+ +.+++. .+.|.++-.++
T Consensus 82 qS~~~e-~~~l~~-------~l~~~~~~~~l 104 (333)
T PRK12282 82 QSQIPE-LAELTM-------YYMNLVTVARL 104 (333)
T ss_pred CCcchH-HHHHHH-------HHHhhchHHHH
Confidence 999844 333332 25676666555
No 96
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.32 E-value=0.00039 Score=84.03 Aligned_cols=94 Identities=23% Similarity=0.225 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEe---eecCC--------------------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTN-------------------------------- 139 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLR---idDTD-------------------------------- 139 (619)
++|==+|.|||.|||||+++.++-+.+||. ..|.-+|. +|.|-
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 445558999999999999999999999993 34554544 22221
Q ss_pred -----chhchHHHHHHHHHHHHHcCCC--CCCcCCCch-hHHHHH-HHHHHHHHcCCccc
Q 007060 140 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD-YFQELY-ELAVELIRRGHAYV 190 (619)
Q Consensus 140 -----p~re~~e~~~~I~edL~wLGi~--pd~~~~qSd-~~~~~y-e~A~~LI~~G~AY~ 190 (619)
|..-...|...|.++++.||+. |+..+.+.+ ++.... ....+|-++|+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 1111245667899999999986 555554444 323222 33468999999876
No 97
>PLN02486 aminoacyl-tRNA ligase
Probab=97.30 E-value=0.0053 Score=67.30 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC----C---chhchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 007060 102 PPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 171 (619)
Q Consensus 102 aPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----D---p~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~ 171 (619)
.=.||| .|||||+-.+++.-.+-+..|..+++=|.|- . ...+..++......++..+|++|++ ++.++++
T Consensus 79 G~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~ 158 (383)
T PLN02486 79 GRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDY 158 (383)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHH
Confidence 446788 5999999998876666666677777777761 1 1112344556667777789999975 5667777
Q ss_pred HH-HHHHHHHH
Q 007060 172 FQ-ELYELAVE 181 (619)
Q Consensus 172 ~~-~~ye~A~~ 181 (619)
+. .+|..+.+
T Consensus 159 ~~~~~~~~~~~ 169 (383)
T PLN02486 159 VGGAFYKNMVK 169 (383)
T ss_pred HhHhHHHHHHH
Confidence 63 34544444
No 98
>PLN02882 aminoacyl-tRNA ligase
Probab=97.28 E-value=0.00057 Score=84.14 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=68.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------h-------h-----------------chHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------E-------A-----------------EKKE 146 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp---------~-------r-----------------e~~e 146 (619)
||.+||.||||||++.++-+.+||. ..|.-+++.-.+|- + + ...+
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999994 56888888777761 0 0 1246
Q ss_pred HHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 147 YIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 147 ~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
|.+.+.+.++.|| ++|+..|++.+ |.........+|.++|..|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7888899999999 77887666554 44444455579999999876
No 99
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.0011 Score=80.43 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-------------------------chh-------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 142 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-------------------------p~r------- 142 (619)
+++==||.+||.||||||++..+-+.+||. ..|.-++.+=..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 455559999999999999999999999994 4566665544444 110
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 143 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 143 e~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
-..++++.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1235677889999999986 777665554 33334444568999999876
No 100
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0017 Score=76.98 Aligned_cols=90 Identities=29% Similarity=0.320 Sum_probs=69.7
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCch-----------------------hc---------hHH
Q 007060 101 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE---------KKE 146 (619)
Q Consensus 101 FaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~-----------------------re---------~~e 146 (619)
=||++||-||||||-...+-+.++|. ..|.-+|=+-.||.. |+ .++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 38999999999999999999999994 467777777777621 21 367
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 147 YIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 147 ~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
+...|.+.++.||+. |+..+++- .+.....+.-.+|-++|..|.
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 888999999999987 44544444 355556677789999999997
No 101
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.05 E-value=0.014 Score=63.98 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=53.1
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHH-H-HHHHHHHHHHcCCEEEEeeecC-----Cc----hhchHHHHHH
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK-A-MFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDH 150 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaR-a-al~n~~~Ar~~~G~~iLRidDT-----Dp----~re~~e~~~~ 150 (619)
+.+-|++.|+. +...++=..=.|||.+||||.- . ..++.+ ...|..+++=|-|. |+ ..........
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~l--q~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~ 129 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKL--TKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEY 129 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHH--HhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHH
Confidence 46666666643 2333333345578999999931 1 123333 34466666656553 22 1123444555
Q ss_pred HHHHHHHcCCCCCC--cCCCchhHHHH
Q 007060 151 IEEIVQWMGWEPFK--ITYTSDYFQEL 175 (619)
Q Consensus 151 I~edL~wLGi~pd~--~~~qSd~~~~~ 175 (619)
+...+..+|++|++ +.+||+++.++
T Consensus 130 ~~~~~~A~GlDp~k~~i~~qS~~v~~~ 156 (383)
T PTZ00126 130 FIEVWKAAGMDMDNVRFLWASEEINKN 156 (383)
T ss_pred HHHHHHHhCCCccceEEEECChhhhhh
Confidence 66678889999984 78999976543
No 102
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.02 E-value=0.0046 Score=64.77 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc-----------hhchHHHHHHHHHHHHHcCCC--CCC
Q 007060 104 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 164 (619)
Q Consensus 104 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp-----------~re~~e~~~~I~edL~wLGi~--pd~ 164 (619)
.||| .|||||.-. +.++..-+..|..+++=|-|- || ..+..+....|..++..+|++ |++
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 4789 799999988 666655555555554433321 33 223445667788889999998 764
Q ss_pred --cCCCchhHH--HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEE
Q 007060 165 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240 (619)
Q Consensus 165 --~~~qSd~~~--~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K 240 (619)
+..||+... .+++++..| -|+.+-.+|...-. ... ++..| ..-|+
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~~-----------~k~------r~~~~-~~~~~------ 134 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKTS-----------FQS------RSEEG-ISATE------ 134 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhChH-----------HHH------HhcCC-CCchh------
Confidence 789999874 356655544 35566555543210 000 00000 00000
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceee-eCCCCcceeecccccccchHHHHHHHHHhC-CCCCc
Q 007060 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV-DSIENITHSLCTLEFETRRASYFWLLHALG-LYQPY 318 (619)
Q Consensus 241 ~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~Vd-D~l~gITHviRg~E~~~~~~~q~~l~~aLg-~~~P~ 318 (619)
-.||.-.=|..+- ..-.+.++++.|.|-..|-..=.-+...++ ...|.
T Consensus 135 ------------------------------~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~ 184 (273)
T cd00395 135 ------------------------------FTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAE 184 (273)
T ss_pred ------------------------------hhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 0133221111110 112456888999888777666666667774 56776
Q ss_pred EEecccc-CCCCcccccccccc
Q 007060 319 VWEYSRL-NVSNTVMSKRKLNF 339 (619)
Q Consensus 319 ~~ef~rL-n~~g~kLSKRk~~~ 339 (619)
....++| +++|.||||+.++.
T Consensus 185 ~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 185 GLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred EEeeccccCCCCCcCCCCCCCC
Confidence 6666664 78999999999764
No 103
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.94 E-value=0.002 Score=67.67 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=101.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch----hchHHHHHHHHHH--HHHcCCCCCC--cCCCch
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPFK--ITYTSD 170 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~----re~~e~~~~I~ed--L~wLGi~pd~--~~~qSd 170 (619)
.|||.|||||+-+++. ...-...|..+++=+-|. |+. +........+..+ +-.+|++|++ +..||+
T Consensus 13 ~PTg~lHlG~l~~~~~-~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIMK-LIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHHH-HHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHHH-HHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 4688899998887754 444444888888877664 333 3334445555555 6688999964 789999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCC
Q 007060 171 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 250 (619)
Q Consensus 171 ~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~ 250 (619)
+.... ++...|...+. .-++.... .++.+.. .+..+ .+..+
T Consensus 92 ~~~~~-~~~~~l~~~~~-------~~~l~~~~------------------~~~~~~~-~~~~~------------~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVAR-------LFSLNRML------------------RFKDVKK-RLKNG------------EGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHB-------HHHHHHHH------------------HHHHHHH-HHSST------------TTSBH
T ss_pred ccccc-chhhhhccccc-------ccchhhhh------------------hhccccc-ccccc------------cCcce
Confidence 86544 55554443322 11222110 1111100 00000 00000
Q ss_pred CceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCC----CCcEEecccc-
Q 007060 251 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 325 (619)
Q Consensus 251 ~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~----~P~~~ef~rL- 325 (619)
....||..+-+ |=...+.++++.|.|-..+-..-.-+...++.. .|.......|
T Consensus 133 ------------------~~~~Yp~lQaa---D~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 ------------------GEFSYPLLQAA---DILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp ------------------HHHHHHHHHHH---HHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ------------------eeEEccccccc---ceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 01236664422 223556669999999887777667777888876 8876666665
Q ss_pred CCCCc-cccccccc
Q 007060 326 NVSNT-VMSKRKLN 338 (619)
Q Consensus 326 n~~g~-kLSKRk~~ 338 (619)
.++|+ |||||..+
T Consensus 192 ~l~G~~KMSKS~~n 205 (292)
T PF00579_consen 192 GLDGQKKMSKSDPN 205 (292)
T ss_dssp STTSSSBTTTTTTG
T ss_pred ccCCccccCccCCc
Confidence 67888 99999988
No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.90 E-value=0.036 Score=61.44 Aligned_cols=51 Identities=12% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
+++.++-|.|-..|-..=.-|.+.++...|.....+.| +.+|+||||+.++
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~n 237 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGG 237 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCC
Confidence 67777888887776666566677788777755555554 7899999999875
No 105
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.84 E-value=0.0026 Score=68.39 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=94.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cc--hhchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 175 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp--~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ 175 (619)
.|||.|||||.-.++-+|.--... ..+++=|-|. ++ ..+..+....+..++-.+|++|++ +..||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 478999999999777776433332 3444444432 21 123344555566777788999975 788999643 4
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEE
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 255 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~ 255 (619)
.+++-.| .|..+--+++.. . + |.+. .+ + . ..+.+
T Consensus 87 ~el~~~l-------~~~~~~~~l~r~--~---------~-------~k~~-~~---------~-~----~~~~~------ 120 (333)
T PRK00927 87 AELAWIL-------NCITPLGELERM--T---------Q-------FKDK-SA---------K-Q----KENVS------ 120 (333)
T ss_pred HHHHHHH-------HhhhhHHHHHhh--h---------h-------HHHH-Hh---------c-c----CCCCC------
Confidence 4544332 444444444321 0 0 0000 00 0 0 00000
Q ss_pred EEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCC------CCCcEEe--c-cc-c
Q 007060 256 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL------YQPYVWE--Y-SR-L 325 (619)
Q Consensus 256 ~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~------~~P~~~e--f-~r-L 325 (619)
.| ...||.-.-|..+ +.+.+++..|.|-..+-..-.-+...++. ..|.... + ++ .
T Consensus 121 ----------~g--~~~YP~lQaaDil---~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~ 185 (333)
T PRK00927 121 ----------AG--LFTYPVLMAADIL---LYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVM 185 (333)
T ss_pred ----------cH--hhhcHHHHHHHHH---hcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhcccccccc
Confidence 00 1236766655444 45789999999887666655556666652 3443332 3 33 3
Q ss_pred CCCCc--ccccccc
Q 007060 326 NVSNT--VMSKRKL 337 (619)
Q Consensus 326 n~~g~--kLSKRk~ 337 (619)
+++|. |||||..
T Consensus 186 gL~g~~~KMSKS~~ 199 (333)
T PRK00927 186 GLDGPTKKMSKSDP 199 (333)
T ss_pred CCCCCCCCCCCCCC
Confidence 67775 9999987
No 106
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.64 E-value=0.051 Score=60.20 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=56.2
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeec----C-Cch-h----------ch
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EK 144 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T-Dp~-r----------e~ 144 (619)
..+.+.++++...-.|.+=| .||| .|||||+-+ +.++..-+..|...++=+-| | ||+ + +.
T Consensus 21 ~~~~l~~~l~~~~~~vy~G~--dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i 97 (408)
T PRK05912 21 DEEELEEKLAKEPLRIYLGF--DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQV 97 (408)
T ss_pred CHHHHHHHhhCCCCEEEEee--cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHH
Confidence 36666677763223344444 5678 499999984 56666666667666666655 2 453 1 23
Q ss_pred HHHHHHHHHHHHHcCCCCCC----cCCCchhHHH
Q 007060 145 KEYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 174 (619)
Q Consensus 145 ~e~~~~I~edL~wLGi~pd~----~~~qSd~~~~ 174 (619)
.++.+.|.+.+ +.|++|++ +..+|+.++.
T Consensus 98 ~~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 98 AENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 44555565555 77888875 7899998653
No 107
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0028 Score=72.35 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEee----------------ecCCchhchHHHHHHHHHHHH
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRY----------------DDTNPEAEKKEYIDHIEEIVQ 156 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~--~G~~iLRi----------------dDTDp~re~~e~~~~I~edL~ 156 (619)
.+.+.-.=|.|+|-|||||.|-..+++.+||.| .|.=++.- ..++|..=+..-++.+.+.|.
T Consensus 58 ~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 58 KKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred CceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 457777779999999999999999999999943 45433321 123344445677888899999
Q ss_pred HcCCC--CCC-c-CCCchhHHHHHHHHHHHHHcCCcccC
Q 007060 157 WMGWE--PFK-I-TYTSDYFQELYELAVELIRRGHAYVD 191 (619)
Q Consensus 157 wLGi~--pd~-~-~~qSd~~~~~ye~A~~LI~~G~AY~c 191 (619)
.||+. ||. + +-..||+.=-+=...+|-++|.||.-
T Consensus 138 ~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 138 SLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred HcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 99986 664 3 33344432222224599999999963
No 108
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.53 E-value=0.014 Score=51.92 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=29.1
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchh
Q 007060 99 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 142 (619)
Q Consensus 99 tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r 142 (619)
+.|+.++ |++|+||...+-- |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997433 3333467889998877644
No 109
>PLN02959 aminoacyl-tRNA ligase
Probab=96.26 E-value=0.011 Score=72.86 Aligned_cols=38 Identities=34% Similarity=0.359 Sum_probs=29.9
Q ss_pred eEEEEeC-CCCCCcCchhHHHHHHHHHHHHHH--cCCEEEE
Q 007060 96 NVLTRFP-PEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYL 133 (619)
Q Consensus 96 ~v~tRFa-PsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iL 133 (619)
+...=|| |.+||.||||||++..+-+.+||. ..|.-+|
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 4566676 999999999999999999999983 3454333
No 110
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.016 Score=68.05 Aligned_cols=91 Identities=31% Similarity=0.376 Sum_probs=69.9
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCch------------------------hc---------hH
Q 007060 101 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------------AE---------KK 145 (619)
Q Consensus 101 FaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~------------------------re---------~~ 145 (619)
=||+.||.||||||-++.+-+.+||. ..|.-+|=+-.||.+ |+ ..
T Consensus 82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~ 161 (995)
T KOG0432|consen 82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE 161 (995)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence 37899999999999999999999994 468888877777731 11 35
Q ss_pred HHHHHHHHHHHHcCCC--CCCcCCCch-hHHH-HHHHHHHHHHcCCcccC
Q 007060 146 EYIDHIEEIVQWMGWE--PFKITYTSD-YFQE-LYELAVELIRRGHAYVD 191 (619)
Q Consensus 146 e~~~~I~edL~wLGi~--pd~~~~qSd-~~~~-~ye~A~~LI~~G~AY~c 191 (619)
+|-..|.+.|+.||-. |+..+|+-| .+.+ .-+...+|-++|..|+.
T Consensus 162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRA 211 (995)
T ss_pred HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEec
Confidence 6778899999999965 776666554 2223 33666799999999985
No 111
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.75 E-value=0.023 Score=69.10 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=49.9
Q ss_pred Cc-EEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHH
Q 007060 317 PY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 317 P~-~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
|. ...+|++..+|+|||||+|| +.++..+.++ |.+.|+|-||+..|-...+..++.+.+.+..
T Consensus 605 Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~ 668 (938)
T TIGR00395 605 PRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTI 668 (938)
T ss_pred CcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 54 34568888899999999999 4678888876 9999999999988765666667776666554
Q ss_pred H
Q 007060 396 R 396 (619)
Q Consensus 396 r 396 (619)
+
T Consensus 669 ~ 669 (938)
T TIGR00395 669 L 669 (938)
T ss_pred H
Confidence 3
No 112
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.0087 Score=67.21 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 354 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 354 ~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
..++..++..||.|+||.+|++.+||+.+...++...+++++..|.........+.+|..||.+.|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 467889999999999999999999999987778999999999999999999999999999999888
No 113
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.80 E-value=0.066 Score=64.87 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=46.0
Q ss_pred EEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 319 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 319 ~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
...+|++..+|.|||||+|| ..+...+.++ |.+.|+|-||+..|-...+..++.+.+.+.
T Consensus 565 v~~hG~vl~~G~KMSKS~GN---------------vVdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~ 624 (897)
T PRK12300 565 IVVNGFVLLEGKKMSKSKGN---------------VIPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESV 624 (897)
T ss_pred EEEcceEEECCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHH
Confidence 44578887799999999999 3567777765 899999999998776666666666555544
No 114
>PLN02886 aminoacyl-tRNA ligase
Probab=94.35 E-value=0.093 Score=57.73 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=59.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCC----c--hhchHHHHHHHHHHHHHcCCCCCC--cCC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----P--EAEKKEYIDHIEEIVQWMGWEPFK--ITY 167 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p--~re~~e~~~~I~edL~wLGi~pd~--~~~ 167 (619)
.|.+=|- |||.+||||.-.++-+|.--.. +..+++=|-|.- + ..+..++...+..++-.+|++|++ ++.
T Consensus 48 ~v~sGiq--PSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 48 RVVSGVQ--PTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred eEEEEEC--CCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 4566555 5699999998888888865544 545555565531 1 123344555566777888999985 789
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 168 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 168 qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
||+. .++.+++-. +.|.++--+|.
T Consensus 125 QS~v-~e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHV-PAHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCC-chhHHHHHH-------HHhhCcHHHHH
Confidence 9985 445555433 45666665554
No 115
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.96 E-value=0.18 Score=55.70 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=48.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cc---hhchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 171 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp---~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~ 171 (619)
.|||.+||||.-.++-||. ..+.++.+++=|-|. ++ ..+..+....+..++-.+|++|++ ++.||+.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc
Confidence 4789999999999888876 445567766666664 22 123445556677788889999975 7899997
No 116
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.81 E-value=0.2 Score=55.76 Aligned_cols=88 Identities=18% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHH-cCCEEEEeeecC-------CchhchHHHHHHHHHHHHHcCCCCCC--cCCCchhH
Q 007060 103 PEPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 172 (619)
Q Consensus 103 PsPtG~LHIGhaRaal~n~~~Ar~-~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~ 172 (619)
=.|||.|||||.-.++-||.-... .+..+++=|-|. ||++. .+....+..++-.+|++|++ +++||+.-
T Consensus 9 iqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~l-r~~~~e~aa~~LA~GlDPek~~if~QSdvp 87 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARI-QRSTLEIAATWLAAGLDPERVTFYRQSDIP 87 (431)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHH-HHHHHHHHHHHHHhCCCccceEEEECCcch
Confidence 358999999999999989887754 355565555553 34332 23344466667778999985 78999953
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 173 QELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 173 ~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
++.+++-.| .|.++.-+|.
T Consensus 88 -eh~EL~wiL-------~~it~~g~L~ 106 (431)
T PRK12284 88 -EIPELTWLL-------TCVAGKGLLN 106 (431)
T ss_pred -hHHHHHHHH-------HhhhhHHHHH
Confidence 455655444 4555554554
No 117
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=93.26 E-value=0.14 Score=62.20 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=55.5
Q ss_pred CchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----ch------------------------------------hchHH
Q 007060 109 LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----PE------------------------------------AEKKE 146 (619)
Q Consensus 109 LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----p~------------------------------------re~~e 146 (619)
|||||+++..+-+.+||. ..|.-+|+.=..| |. .-...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999994 4677776632222 11 01123
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCch-hHHHHH-HHHHHHHHcCCcccC
Q 007060 147 YIDHIEEIVQWMGWE--PFKITYTSD-YFQELY-ELAVELIRRGHAYVD 191 (619)
Q Consensus 147 ~~~~I~edL~wLGi~--pd~~~~qSd-~~~~~y-e~A~~LI~~G~AY~c 191 (619)
|.+.+.++++.||+. |+..+.+.+ ++.... ....+|.++|++|.-
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg 129 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKG 129 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecC
Confidence 457789999999986 666655554 222222 334589999999953
No 118
>PLN02943 aminoacyl-tRNA ligase
Probab=92.98 E-value=0.18 Score=61.70 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=50.0
Q ss_pred cEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHH
Q 007060 318 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 318 ~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r 396 (619)
.+|-||.+ +.+|+|||||+|| ..+...+.++ |.|+|+|-||+..+. ..+..++++.|.+ ++
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGN---------------VIDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCC---------------CCCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 46777776 6899999999998 3567777766 999999999998665 4555678777765 45
Q ss_pred HHhhc
Q 007060 397 EELNK 401 (619)
Q Consensus 397 ~~~~~ 401 (619)
.+++.
T Consensus 631 ~~~~k 635 (958)
T PLN02943 631 AFTNK 635 (958)
T ss_pred HHHHH
Confidence 55543
No 119
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.13 E-value=0.21 Score=61.16 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred EEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 319 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 319 ~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
.+-+|++ ..+|+|||||+|| ..+...+.++ |.+.|+|-|+++.+....+..++++.+-+.++.
T Consensus 579 v~~hG~Vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~ 642 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGN---------------YVDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRK 642 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCC---------------cCCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHH
Confidence 4456664 5699999999998 3567777776 899999999999987666667888775455555
Q ss_pred Hhhc
Q 007060 398 ELNK 401 (619)
Q Consensus 398 ~~~~ 401 (619)
++++
T Consensus 643 ~l~k 646 (975)
T PRK06039 643 FLLT 646 (975)
T ss_pred HHHH
Confidence 5544
No 120
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=91.51 E-value=0.44 Score=57.75 Aligned_cols=67 Identities=19% Similarity=0.141 Sum_probs=50.8
Q ss_pred cEEeccccC-CCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHH
Q 007060 318 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 318 ~~~ef~rLn-~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r 396 (619)
..+-||.+. .+|.|||||+|| ..+...+.++ |.+.|+|-|++..+....+..++++.+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGN---------------vIdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGN---------------VIDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 566778765 799999999998 3566677765 889999999998876666777888877654 3
Q ss_pred HHhhc
Q 007060 397 EELNK 401 (619)
Q Consensus 397 ~~~~~ 401 (619)
.+.++
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 44444
No 121
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=91.46 E-value=0.96 Score=53.29 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=52.9
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc----hhchHHHHHHHH
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 152 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp----~re~~e~~~~I~ 152 (619)
+.+-|++-|+. +..++.=..=.|||.|||||.--..++.....+.|..+++=|-|. |+ .+........+.
T Consensus 19 ~~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~ 97 (682)
T PTZ00348 19 QESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 97 (682)
T ss_pred CHHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHH
Confidence 35555544433 223333334567899999994222344444446677776666664 22 111222334667
Q ss_pred HHHHHcCCCCCC--cCCCchhHH
Q 007060 153 EIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 153 edL~wLGi~pd~--~~~qSd~~~ 173 (619)
.++..+|++|++ +.+||+.+.
T Consensus 98 ~~~lA~GlDpeK~~~~~qSd~i~ 120 (682)
T PTZ00348 98 EVWKAAGMDMDKVLFLWSSEEIT 120 (682)
T ss_pred HHHHHcCCCccceEEEECcHhhh
Confidence 778899999984 789998543
No 122
>PLN02959 aminoacyl-tRNA ligase
Probab=90.85 E-value=0.63 Score=57.69 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred EEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHH
Q 007060 319 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 393 (619)
Q Consensus 319 ~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~ 393 (619)
...+|++..+|.|||||+|| ..++..+.++ |.+.|+|-||+..|-...+..++...+.+
T Consensus 706 v~v~G~V~~~G~KMSKSkGN---------------vI~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~ 764 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGN---------------FLTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANA 764 (1084)
T ss_pred EEEccEEecCCcCccccCCC---------------cCCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHH
Confidence 34567888999999999999 3567777765 99999999998876555555566554333
No 123
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=89.70 E-value=0.45 Score=57.53 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=48.4
Q ss_pred EEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 319 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 319 ~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
.+-+|++ ..+|.|||||+|+ ..+...+.++ |.++|+|-|++.. -...+..++++.+.+..+.
T Consensus 598 v~~hG~vl~~~G~KMSKSkGN---------------vI~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~ 660 (861)
T TIGR00392 598 VITHGFTLDEKGRKMSKSLGN---------------VVDPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVEK 660 (861)
T ss_pred hEecceEECCCCCCcCCCCCC---------------CCCHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHH
Confidence 3446665 4589999999998 3567777765 9999999999988 4445557888888776554
Q ss_pred Hhhc
Q 007060 398 ELNK 401 (619)
Q Consensus 398 ~~~~ 401 (619)
+.+.
T Consensus 661 ~~n~ 664 (861)
T TIGR00392 661 YRKI 664 (861)
T ss_pred HHHH
Confidence 4433
No 124
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=89.58 E-value=0.78 Score=56.76 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=47.9
Q ss_pred EEeccccCC-CCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 319 VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 319 ~~ef~rLn~-~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
.+-+|++.. +|.|||||+||. .+...+.++ |.++++|-||+..+....+..++++.|+.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 555677754 999999999983 455566654 889999999998776666667887777543 34
Q ss_pred Hhhc
Q 007060 398 ELNK 401 (619)
Q Consensus 398 ~~~~ 401 (619)
+++.
T Consensus 588 f~nk 591 (1052)
T PRK14900 588 FANK 591 (1052)
T ss_pred HHHH
Confidence 4444
No 125
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=87.93 E-value=2.7 Score=46.25 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----h------chH
Q 007060 83 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 145 (619)
Q Consensus 83 ~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------e~~ 145 (619)
.+.++++++. .-.+.+=| .||| .|||||+-+++. ...-...|-..++=+-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~G~--dPTg~~lHlGh~v~l~~-l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYVGF--DPTAPSLHLGHLVPLLK-LRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEEee--CCCCCCccHHHHHHHHH-HHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 6778777765 43444444 5789 899999987543 333334454544445553 331 1 123
Q ss_pred HHHHHHHHHHHHcCCCCC--CcCCCchhHH
Q 007060 146 EYIDHIEEIVQWMGWEPF--KITYTSDYFQ 173 (619)
Q Consensus 146 e~~~~I~edL~wLGi~pd--~~~~qSd~~~ 173 (619)
++.+.|...+ ..|++|+ ++.++|+++.
T Consensus 96 ~n~~~i~~~l-a~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKKQI-ARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHHHH-HHhCChhheEEEECchhcC
Confidence 3444444433 5688875 4778888754
No 126
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.75 E-value=3.5 Score=45.78 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=50.1
Q ss_pred CcHHHHHHHhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----h---chHH
Q 007060 81 NTKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A---EKKE 146 (619)
Q Consensus 81 ~~~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r---e~~e 146 (619)
.+++.+.+.++.. .++.=..=.||| .|||||+-.++.=-.|- ..|=+-++=+-|- ||. | ..+.
T Consensus 19 ~~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ-~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~ 95 (401)
T COG0162 19 TDEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQ-DAGHKPIVLIGDATAMIGDPSGKSEERKLLTRET 95 (401)
T ss_pred CcHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHH-HCCCeEEEEecccceecCCCCCCHHHHhhccHHH
Confidence 3577777766654 455555567889 89999998875422222 2232333333332 441 1 1233
Q ss_pred HHHHHHHHHHHcCCCCC---CcCCCchhHH
Q 007060 147 YIDHIEEIVQWMGWEPF---KITYTSDYFQ 173 (619)
Q Consensus 147 ~~~~I~edL~wLGi~pd---~~~~qSd~~~ 173 (619)
+.+.+....+.||...+ ++.+.|+.+.
T Consensus 96 v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~ 125 (401)
T COG0162 96 VLENAETIKKQLGKFLDNKAEFVNNSDWLK 125 (401)
T ss_pred HHHHHHHHHHHhcccCCcceEEEechHHhC
Confidence 44455555667776555 4667777654
No 127
>PLN02882 aminoacyl-tRNA ligase
Probab=86.84 E-value=1.3 Score=55.44 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=43.8
Q ss_pred CCCCCcE-EeccccC-CCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCC-cchhHh
Q 007060 313 GLYQPYV-WEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD-SLIRLD 389 (619)
Q Consensus 313 g~~~P~~-~ef~rLn-~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~-~~~~~~ 389 (619)
|..+|.. ..+|++. .+|+|||||++|. .....+.++ |.+.|+|-|++.......+ ..++.+
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNv---------------IdP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNY---------------PDPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 4444432 3367754 4899999999983 344555554 8899999999977654333 346555
Q ss_pred HHHHHHH
Q 007060 390 RLEYHIR 396 (619)
Q Consensus 390 ~Le~~~r 396 (619)
.+.+.++
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 5554433
No 128
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=86.47 E-value=1.5 Score=50.98 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=44.9
Q ss_pred cceeecccccccchHHHHHHH-HHhCCCC--CcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcC
Q 007060 289 ITHSLCTLEFETRRASYFWLL-HALGLYQ--PYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 364 (619)
Q Consensus 289 ITHviRg~E~~~~~~~q~~l~-~aLg~~~--P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG 364 (619)
++-.+-|.|++.+--....+. -+|--.. .....+|. +..+|+|||||+|| ..+...+.++
T Consensus 515 ~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN---------------vi~p~~ii~~- 578 (601)
T PF00133_consen 515 VDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGN---------------VIDPEDIIEK- 578 (601)
T ss_dssp BSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH-
T ss_pred cccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCc---------------ccCHHHHHHH-
Confidence 444555677665443333332 2342222 33455666 46799999999999 4678888876
Q ss_pred CCHHHHHHHHHHcCcc
Q 007060 365 VTSTSINAFVQGIGIS 380 (619)
Q Consensus 365 ~~peAI~~fl~~lG~s 380 (619)
|-+.|+|-|++..+-.
T Consensus 579 yGaD~lRl~~~~~~~~ 594 (601)
T PF00133_consen 579 YGADALRLWLASSADP 594 (601)
T ss_dssp T-HHHHHHHHHHHS-T
T ss_pred hCcHHHHHHHHhcCCc
Confidence 9999999999865543
No 129
>PLN02843 isoleucyl-tRNA synthetase
Probab=86.37 E-value=2 Score=52.84 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=43.4
Q ss_pred CcEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHc--------CCCHHHHHHHHHHcCccCCCcchh
Q 007060 317 PYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIR 387 (619)
Q Consensus 317 P~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrr--------G~~peAI~~fl~~lG~s~~~~~~~ 387 (619)
-.+|-||.+ ..+|.|||||+|| ..+...+.+. -|.++++|-|+++..++. +..++
T Consensus 596 k~v~~HG~vld~~G~KMSKSlGN---------------vI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s 659 (974)
T PLN02843 596 KSVLTHGFVLDEKGFKMSKSLGN---------------VVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIG 659 (974)
T ss_pred ceEEEeccEECCCCCCcCCCCCC---------------cCCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeC
Confidence 356778864 6689999999998 3566677763 388999999999866654 44455
Q ss_pred HhHHH
Q 007060 388 LDRLE 392 (619)
Q Consensus 388 ~~~Le 392 (619)
...|.
T Consensus 660 ~~~l~ 664 (974)
T PLN02843 660 PQILK 664 (974)
T ss_pred HHHHH
Confidence 54444
No 130
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=86.21 E-value=1.9 Score=52.60 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCCCCc-EEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhH
Q 007060 313 GLYQPY-VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 390 (619)
Q Consensus 313 g~~~P~-~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~ 390 (619)
|..++. .+-||++ ..+|.|||||+||. .+...+.++ |.++++|-|++...+ ..+..++.+.
T Consensus 572 g~~P~k~vl~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~~~~-~~D~~~s~~~ 634 (912)
T PRK05743 572 GKAPYKQVLTHGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVASTDY-SGDVRISDEI 634 (912)
T ss_pred CCCccceeEEeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHhcCC-CCCeeecHHH
Confidence 544333 3346764 56999999999993 455666654 899999999997333 4444566555
Q ss_pred HHH
Q 007060 391 LEY 393 (619)
Q Consensus 391 Le~ 393 (619)
|.+
T Consensus 635 l~~ 637 (912)
T PRK05743 635 LKQ 637 (912)
T ss_pred HHH
Confidence 543
No 131
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=85.72 E-value=0.072 Score=56.98 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=37.6
Q ss_pred cCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCc-chhHhHHHHHHHH
Q 007060 346 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIRLDRLEYHIRE 397 (619)
Q Consensus 346 v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~-~~~~~~Le~~~r~ 397 (619)
+.+|++|+..++..|+++|++|+++++|+...|++...+ ...+...+.++++
T Consensus 258 ~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~ 310 (314)
T PF00749_consen 258 YREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRK 310 (314)
T ss_dssp HHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHH
T ss_pred cccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHH
Confidence 468999999999999999999999999999999876552 2333344444443
No 132
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=84.14 E-value=2.2 Score=52.35 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=41.6
Q ss_pred cEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHH
Q 007060 318 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 393 (619)
Q Consensus 318 ~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~ 393 (619)
..+-||.+ ..+|.|||||+||. .....+.+ .|.++++|-|+++...+ .+..++.+.|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~-~yGaD~lRl~lls~~~~-~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIK-QSGADILRLWVASVDYS-DDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHH-hcCHHHHHHHHHhCCCC-CCcccCHHHHHH
Confidence 56677875 45999999999983 34556665 49999999999975543 344566555433
No 133
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.76 E-value=2.4 Score=51.58 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEeeecCC-------------------------chh-------chHHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYDDTN-------------------------PEA-------EKKEY 147 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~~--~G~~iLRidDTD-------------------------p~r-------e~~e~ 147 (619)
||..||.+|||||-+=++-+.+-|.+ .|.-+-|.=.=| .+. ...++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999988888842 344433332222 111 12467
Q ss_pred HHHHHHHHHHcCCC--CCCcC--CCchhHHHHHHHHHHHHHcCCcccCC
Q 007060 148 IDHIEEIVQWMGWE--PFKIT--YTSDYFQELYELAVELIRRGHAYVDH 192 (619)
Q Consensus 148 ~~~I~edL~wLGi~--pd~~~--~qSd~~~~~ye~A~~LI~~G~AY~c~ 192 (619)
++...++++.||+- |+.+| ..-+|.........+|.++|+.|...
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~ 185 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGY 185 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCC
Confidence 88888899999984 55554 44556666677778999999999643
No 134
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=81.67 E-value=3.2 Score=52.14 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=45.1
Q ss_pred EEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCcc-CCCcchhHhHHHHHHH
Q 007060 319 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIR 396 (619)
Q Consensus 319 ~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s-~~~~~~~~~~Le~~~r 396 (619)
..-+|++ ..+|+|||||+||. .....+.+ .|-+.|+|-|+++.+.. ..+..++...+.+..+
T Consensus 707 VlvHG~Vld~dG~KMSKSlGNv---------------IDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r 770 (1205)
T PTZ00427 707 LICNGLVLASDGKKMSKRLKNY---------------PDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK 770 (1205)
T ss_pred eEEccEEEcCCCCCcccCCCCC---------------CCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH
Confidence 3345664 57999999999983 23334444 38899999999976543 3454677777776666
Q ss_pred HHhh
Q 007060 397 EELN 400 (619)
Q Consensus 397 ~~~~ 400 (619)
+++.
T Consensus 771 ~~l~ 774 (1205)
T PTZ00427 771 SFIL 774 (1205)
T ss_pred HHHH
Confidence 6653
No 135
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.93 E-value=4.8 Score=48.62 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=47.2
Q ss_pred HhCCCCCcEEec--cc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchh
Q 007060 311 ALGLYQPYVWEY--SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 387 (619)
Q Consensus 311 aLg~~~P~~~ef--~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~ 387 (619)
+|.-..|...-| |. ...+|.|||||+||-. || .++.++ |-..|||.+++.++..-.+..++
T Consensus 502 ~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-YGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred HhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-hChHHHHHHHHhccCCCcccCcC
Confidence 444456653333 44 4789999999999832 33 455554 78999999999888777777788
Q ss_pred HhHHHH
Q 007060 388 LDRLEY 393 (619)
Q Consensus 388 ~~~Le~ 393 (619)
+..++.
T Consensus 566 ~~~~~~ 571 (877)
T COG0525 566 EKRVEG 571 (877)
T ss_pred HHHHHH
Confidence 777763
No 136
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=78.29 E-value=5.5 Score=48.07 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=35.8
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
|||||++| +.++.++.++ |.+.|+|-|++..|--..+..++.+.|++.
T Consensus 570 KMSKS~GN---------------~i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 570 KMSKSKGN---------------VVDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred EeCCCCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 99999999 4678888876 999999999998764444444555555443
No 137
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=77.35 E-value=2.8 Score=50.82 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=34.7
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHH
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 392 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le 392 (619)
|||||++| ..++..+.++ |.+.|+|-|++..+--..+..++.+.++
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~ 649 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLE 649 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHH
Confidence 99999999 4688888876 9999999999977543444445544454
No 138
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.89 E-value=5.4 Score=48.04 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCCcceeecccccccchHHHHHHHH-Hh---C-C--CCCcEE--eccccCC-CCccccccccccccccCccCCCCCcccc
Q 007060 286 IENITHSLCTLEFETRRASYFWLLH-AL---G-L--YQPYVW--EYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLM 355 (619)
Q Consensus 286 l~gITHviRg~E~~~~~~~q~~l~~-aL---g-~--~~P~~~--ef~rLn~-~g~kLSKRk~~~lV~~g~v~gWDDPR~~ 355 (619)
-+-|..-|=|.||..+.-.|.-+.. +| | | ..|..- .-|++-. +|.|||||++| ..
T Consensus 524 W~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN---------------~v 588 (814)
T COG0495 524 WYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN---------------VV 588 (814)
T ss_pred ccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCC---------------CC
Confidence 3444555556677666555544333 22 2 2 223111 1133334 79999999998 46
Q ss_pred cHHHHHHcCCCHHHHHHHHHHcCccCCC
Q 007060 356 TLAGLRRRGVTSTSINAFVQGIGISRSD 383 (619)
Q Consensus 356 Tl~~lrrrG~~peAI~~fl~~lG~s~~~ 383 (619)
++..+.++ |-+.++|-|++..|-...+
T Consensus 589 ~p~~~i~~-yGADt~Rl~~m~~ap~~~d 615 (814)
T COG0495 589 DPEEAVEK-YGADTVRLYIMFAAPPEQD 615 (814)
T ss_pred CHHHHHHH-hCchHHHHHHHhhCChhhC
Confidence 78888876 8899999999998854433
No 139
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.79 E-value=7.8 Score=41.21 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=48.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH---cCCEEEEeeecCCc---hhchHHHHHHHHHH---HHHcCCCCCC--cCCCch
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE---RGGYCYLRYDDTNP---EAEKKEYIDHIEEI---VQWMGWEPFK--ITYTSD 170 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~---~~G~~iLRidDTDp---~re~~e~~~~I~ed---L~wLGi~pd~--~~~qSd 170 (619)
.--|||.+||||--.|+=+|.--.. .+-.+++-+-|.-. .....++-+++.++ |=..||+|.+ ..+||+
T Consensus 19 GIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~ 98 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSD 98 (347)
T ss_pred ccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeecc
Confidence 3569999999999999999965442 23357777777631 11122444555554 4456999986 678887
Q ss_pred hHHHHHHH
Q 007060 171 YFQELYEL 178 (619)
Q Consensus 171 ~~~~~ye~ 178 (619)
- .+.-++
T Consensus 99 V-pqh~el 105 (347)
T KOG2713|consen 99 V-PQHAEL 105 (347)
T ss_pred c-hHHHHH
Confidence 4 334433
No 140
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=71.28 E-value=7.3 Score=48.17 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEeeecCC-----c----hhchHHHHHHHHHHHHHcCCC
Q 007060 105 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN-----P----EAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 105 PtG~LHI--GhaRaal~n~~~Ar~~~G~~iLRidDTD-----p----~re~~e~~~~I~edL~wLGi~ 161 (619)
-||..|+ ||.- -.|.+++.||=.++-=+++.- . .....++-+.|.++|+-.|+-
T Consensus 312 GTG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 312 GTGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 3777777 3432 346677777644443333221 1 123556778899999988874
No 141
>PLN02563 aminoacyl-tRNA ligase
Probab=70.48 E-value=5.3 Score=49.14 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHH
Q 007060 328 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 393 (619)
Q Consensus 328 ~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~ 393 (619)
.+.|||||++|. .....+.++ |-+.++|-|++..+....+...+.+.++.
T Consensus 720 ~~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g 769 (963)
T PLN02563 720 RAHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEG 769 (963)
T ss_pred cccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHH
Confidence 345999999983 455666655 88999999999888655554444444544
No 142
>PLN02381 valyl-tRNA synthetase
Probab=68.42 E-value=10 Score=47.23 Aligned_cols=28 Identities=4% Similarity=0.005 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHcCccCCCcchhHhHHH
Q 007060 365 VTSTSINAFVQGIGISRSDSLIRLDRLE 392 (619)
Q Consensus 365 ~~peAI~~fl~~lG~s~~~~~~~~~~Le 392 (619)
|-+.|+|-|++..+....+..+++..+.
T Consensus 710 yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 710 CGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred cChHHHHHHHHcCCccccccCccHHHHH
Confidence 6799999999988765555555555443
No 143
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.30 E-value=9.6 Score=45.23 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=43.1
Q ss_pred hcCCeEEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE--eeecCCchhchHHHHHHHHHHHHHcCCCCC
Q 007060 92 VTGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL--RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 163 (619)
Q Consensus 92 ~~~g~v~tRFa-PsPtG~LHIGhaRaal---~n~~~Ar~~~G~~iL--RidDTDp~re~~e~~~~I~edL~wLGi~pd 163 (619)
..+++..+-|| |--||.||+||+.++- |.-+|-|-.|-.+++ -|-.|-- -.....+...+.++.+|-.||
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGM--PI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGM--PIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCC--ccHHhHHHHHHHHHHhCCCCC
Confidence 34556667774 8889999999998864 333444544433332 4455541 122344566677778888775
No 144
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.15 E-value=26 Score=41.71 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=65.4
Q ss_pred cHHHHHHHhhhcCC-eEEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----c-----------hhc
Q 007060 82 TKEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----P-----------EAE 143 (619)
Q Consensus 82 ~~~~~~~~~~~~~g-~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----p-----------~re 143 (619)
.++++.+.|...++ ..+.- ..||-||+|||+.-++-+..-| -..|+-++-.=.-| | +.+
T Consensus 45 ~~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~ 121 (937)
T KOG0433|consen 45 PPEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE 121 (937)
T ss_pred ChHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc
Confidence 46677777666543 23332 2899999999998877554333 23343333222222 1 111
Q ss_pred ---------------hHHHHHHHHHHHHHcCCC--CCC--cCCCchhHHHHHHHHHHHHHcCCcccCC
Q 007060 144 ---------------KKEYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDH 192 (619)
Q Consensus 144 ---------------~~e~~~~I~edL~wLGi~--pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~ 192 (619)
..+++....+.++..|+- |.. ++.+.+|--.-.+...+|.++|..|+.+
T Consensus 122 ~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 122 GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 235666677778888986 444 4566666555556667899999999764
No 145
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.70 E-value=11 Score=46.07 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=30.3
Q ss_pred ccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCc
Q 007060 322 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGI 379 (619)
Q Consensus 322 f~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~ 379 (619)
||. |.-+|.|||||+||. ..-..+.++ |-+.++|-|+++.-+
T Consensus 592 HGfvlDe~GrKMSKSlGN~---------------v~P~~V~~~-yGADiLRLwv~ssd~ 634 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNV---------------VDPQDVIDK-YGADILRLWVASSDY 634 (933)
T ss_pred cccEECCCCCCccccCCCc---------------CCHHHHHHh-hCchheeeeeeecCc
Confidence 444 688999999999994 344555554 667888888876653
No 146
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=29 Score=37.14 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCch-------hchHHHHHHHHHHHHHcCCCCCCc--CCCchhH
Q 007060 106 NGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE-------AEKKEYIDHIEEIVQWMGWEPFKI--TYTSDYF 172 (619)
Q Consensus 106 tG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~-------re~~e~~~~I~edL~wLGi~pd~~--~~qSd~~ 172 (619)
++.|||||+-.+++.-++-..++..+++.++|-..- .+...|...=..|+=.+|++|... ....+|.
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~ 171 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYM 171 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhc
Confidence 688999999999999888888999888877654210 112233333344555789998763 3344454
No 147
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.80 E-value=8.8 Score=45.53 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=35.9
Q ss_pred cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCc
Q 007060 323 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 384 (619)
Q Consensus 323 ~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~ 384 (619)
|||-+++.||||+.|| +.||..-.+. |...+.|--++..|=+-.+.
T Consensus 702 GHLmLNsEKMSKSTGN---------------fmTL~qaieK-Fgad~tRlalAdaGD~veDA 747 (1080)
T KOG0437|consen 702 GHLMLNSEKMSKSTGN---------------FMTLEQAIEK-FGADGTRLALADAGDGVEDA 747 (1080)
T ss_pred ceEEecchhhccccCC---------------eeeHHHHHHH-hCccceeeeeecccCCcccc
Confidence 6888999999999999 6798877765 77777777777777555444
No 148
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.68 E-value=48 Score=38.03 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.2
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHH
Q 007060 95 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLA 124 (619)
Q Consensus 95 g~v~tRF-aPsPtG~LHIGhaRaal~n~~~A 124 (619)
.+||+-| +|+-.=.+|+||+|+-++.-..|
T Consensus 110 k~iVVefSSPNIAK~FHvGhLRsTiiG~fla 140 (567)
T KOG1195|consen 110 KKIVVEFSSPNIAKPFHVGHLRSTIIGNFLA 140 (567)
T ss_pred ceEEEEecCCCcccccccchhhhhhhhhHhh
Confidence 4689999 78989999999999888755555
No 149
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.32 E-value=38 Score=38.17 Aligned_cols=45 Identities=27% Similarity=0.454 Sum_probs=36.8
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC
Q 007060 95 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 139 (619)
Q Consensus 95 g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD 139 (619)
.+|++-| +|+----||+||+|+-++..-++| .+-|.=+||..-+-
T Consensus 188 KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvG 235 (656)
T KOG4426|consen 188 KRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVG 235 (656)
T ss_pred eeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecccc
Confidence 4688888 666667899999999999999999 46788888876553
No 150
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=26.79 E-value=78 Score=32.12 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHcCCEEEEeeecCCchhc---hH----HHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHH
Q 007060 111 IGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE---KK----EYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 183 (619)
Q Consensus 111 IGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re---~~----e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ye~A~~LI 183 (619)
+||+-.|++||-+++.+|=+.+.-| |+||..- .. .-.+.+.+-++--+++---.+..+++ -++.|+.|+
T Consensus 92 ~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~---AQ~vad~Lv 167 (211)
T COG2344 92 VGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH---AQEVADRLV 167 (211)
T ss_pred cChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH---HHHHHHHHH
Confidence 5788889999999998877766655 6887531 11 12344555555556654456666776 567788999
Q ss_pred HcCC
Q 007060 184 RRGH 187 (619)
Q Consensus 184 ~~G~ 187 (619)
+.|-
T Consensus 168 ~aGV 171 (211)
T COG2344 168 KAGV 171 (211)
T ss_pred HcCC
Confidence 9875
No 151
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=21.99 E-value=1.9e+02 Score=28.49 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=32.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchh------chHHHHHHHHHHHHHcCCCC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 162 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r------e~~e~~~~I~edL~wLGi~p 162 (619)
-+.+||-| +|+||+..+. ..+++ -+++++=+-.-++.+ ...+=.+.|...+.-+|++.
T Consensus 3 l~~GrF~P-----~H~GHl~~i~--~a~~~--~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~ 66 (181)
T cd02168 3 VYIGRFQP-----FHNGHLAVVL--IALEK--AKKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADL 66 (181)
T ss_pred EEeeccCC-----CCHHHHHHHH--HHHHH--CCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCc
Confidence 35689988 8999997654 33333 236666554433221 22344445555555556543
No 152
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=21.89 E-value=75 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=19.8
Q ss_pred ccccHHHHHHcCCCHHHHHHHHHH
Q 007060 353 CLMTLAGLRRRGVTSTSINAFVQG 376 (619)
Q Consensus 353 R~~Tl~~lrrrG~~peAI~~fl~~ 376 (619)
++-.+..||+.|+++++|...+..
T Consensus 46 ~l~~i~~lr~~g~~~~~i~~~l~l 69 (70)
T smart00422 46 RLRFIKRLKELGFSLEEIKELLEL 69 (70)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhc
Confidence 356788899999999999988764
No 153
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.61 E-value=1.3e+02 Score=21.49 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=15.8
Q ss_pred cHHHHHHcCCCHHHHHHHHHH
Q 007060 356 TLAGLRRRGVTSTSINAFVQG 376 (619)
Q Consensus 356 Tl~~lrrrG~~peAI~~fl~~ 376 (619)
-+..-++.|++++-++.|+..
T Consensus 8 Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 8 LIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 366778899999999999864
No 154
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=20.60 E-value=2.6e+02 Score=28.88 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=38.0
Q ss_pred EEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC---cCCC---------chhHHHHHHHHHHHHHcCC
Q 007060 131 CYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---ITYT---------SDYFQELYELAVELIRRGH 187 (619)
Q Consensus 131 ~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---~~~q---------Sd~~~~~ye~A~~LI~~G~ 187 (619)
-++||+|+.|. ...+-...|.+-|...|+..-- +.|. -.....+.++.+.+..+|.
T Consensus 2 ~lirleDVsP~-~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg 69 (243)
T PF10096_consen 2 ALIRLEDVSPF-SDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGG 69 (243)
T ss_pred cEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCC
Confidence 58999999994 5556777888889999997421 1111 1113456777778888884
No 155
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.42 E-value=56 Score=32.01 Aligned_cols=20 Identities=30% Similarity=0.364 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCcccCCCCH
Q 007060 176 YELAVELIRRGHAYVDHQTP 195 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~ 195 (619)
.|+|.+|-++|+.|.|.||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 48999999999999999885
No 156
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.08 E-value=2.9e+02 Score=33.38 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHhhhcCCeEEEEe---CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEE
Q 007060 86 LDKHLEVTGGNVLTRF---PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYL 133 (619)
Q Consensus 86 ~~~~~~~~~g~v~tRF---aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iL 133 (619)
.+.-|+.+.|+--.-| ||-.||-.|-||.-|..+-+...| ...|..+=
T Consensus 27 F~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVe 79 (1070)
T KOG0434|consen 27 FHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVE 79 (1070)
T ss_pred HHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhcccccee
Confidence 3344566666443344 899999999999999999887776 23454443
Done!