Query 007060
Match_columns 619
No_of_seqs 405 out of 2438
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 1E-149 4E-154 1239.2 44.7 526 83-618 12-552 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 2E-144 8E-149 1240.2 46.8 523 83-617 52-634 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 1E-125 4E-130 1047.3 34.9 455 90-604 90-548 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 8.1E-78 2.8E-82 667.3 16.8 312 83-419 9-344 (512)
5 1j09_A Glutamyl-tRNA synthetas 100.0 6.1E-76 2.1E-80 644.7 16.9 288 96-419 1-314 (468)
6 2cfo_A Glutamyl-tRNA synthetas 100.0 2.1E-75 7.3E-80 643.9 19.3 294 96-419 1-319 (492)
7 2ja2_A Glutamyl-tRNA synthetas 100.0 5.8E-75 2E-79 640.1 18.7 298 93-419 3-328 (498)
8 4g6z_A Glutamate-tRNA ligase; 100.0 5.2E-74 1.8E-78 630.0 16.2 286 95-419 24-334 (490)
9 3afh_A Glutamyl-tRNA synthetas 100.0 6.9E-72 2.4E-76 615.0 11.6 290 92-419 21-325 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 4E-69 1.4E-73 604.9 7.6 287 95-419 128-429 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 7.3E-68 2.5E-72 583.0 16.8 288 96-419 13-333 (481)
12 1nzj_A Hypothetical protein YA 100.0 1.1E-65 3.8E-70 534.9 12.7 268 94-409 3-289 (298)
13 1irx_A Lysyl-tRNA synthetase; 100.0 2.1E-30 7.1E-35 288.3 4.6 266 96-419 21-351 (523)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.9 6.3E-26 2.2E-30 248.9 19.3 260 94-396 20-314 (461)
15 3tqo_A Cysteinyl-tRNA syntheta 99.9 1.8E-25 6.3E-30 244.6 16.6 250 102-394 32-315 (462)
16 3c8z_A Cysteinyl-tRNA syntheta 99.9 1.7E-23 5.8E-28 226.6 17.6 259 100-397 44-341 (414)
17 3sp1_A Cysteinyl-tRNA syntheta 99.9 8.7E-23 3E-27 224.9 17.4 254 102-397 49-349 (501)
18 2csx_A Methionyl-tRNA syntheta 99.8 7.3E-21 2.5E-25 209.8 15.5 267 96-397 7-345 (497)
19 2d5b_A Methionyl-tRNA syntheta 99.8 6E-19 2E-23 194.4 16.2 274 97-397 6-347 (500)
20 1iq0_A Arginyl-tRNA synthetase 99.7 4.5E-17 1.5E-21 183.8 12.9 297 72-418 74-465 (592)
21 2dlc_X Tyrosyl-tRNA synthetase 99.7 1.8E-16 6.1E-21 170.8 12.3 193 82-339 25-235 (394)
22 3h99_A Methionyl-tRNA syntheta 99.6 5.9E-15 2E-19 165.2 22.0 286 97-400 21-400 (560)
23 4dlp_A Aminoacyl-tRNA syntheta 99.6 4.7E-15 1.6E-19 165.2 16.7 278 96-395 27-369 (536)
24 2x1l_A Methionyl-tRNA syntheta 99.6 5.5E-15 1.9E-19 163.9 16.3 282 97-397 15-360 (524)
25 3fnr_A Arginyl-tRNA synthetase 99.5 4.2E-14 1.4E-18 155.2 15.2 247 94-378 29-316 (464)
26 1f7u_A Arginyl-tRNA synthetase 99.4 1.1E-13 3.7E-18 156.5 8.9 250 94-419 142-482 (607)
27 2cyb_A Tyrosyl-tRNA synthetase 99.4 2.9E-13 1E-17 142.1 11.2 231 83-401 20-261 (323)
28 1n3l_A Tyrosyl-tRNA synthetase 99.4 5.9E-13 2E-17 142.4 13.5 192 82-338 23-229 (372)
29 2zue_A Arginyl-tRNA synthetase 99.4 3.6E-13 1.2E-17 152.9 10.4 250 94-391 118-496 (629)
30 3kfl_A Methionyl-tRNA syntheta 99.4 1.7E-12 5.8E-17 145.6 15.5 96 96-191 28-143 (564)
31 3u1f_A Methionyl-tRNA syntheta 99.3 1.4E-11 4.9E-16 136.9 15.4 94 97-190 12-125 (542)
32 1rqg_A Methionyl-tRNA syntheta 99.2 3.1E-11 1.1E-15 139.1 12.3 94 97-190 5-119 (722)
33 2g36_A Tryptophanyl-tRNA synth 98.7 1.5E-08 5.2E-13 107.1 8.5 181 95-338 13-212 (340)
34 2cya_A Tyrosyl-tRNA synthetase 98.7 8E-08 2.7E-12 102.5 13.9 192 82-337 22-244 (364)
35 2zp1_A Tyrosyl-tRNA synthetase 98.7 6.5E-08 2.2E-12 101.2 10.6 111 82-201 16-133 (314)
36 2yy5_A Tryptophanyl-tRNA synth 98.6 5.7E-08 2E-12 103.0 7.5 183 96-338 6-209 (348)
37 1i6k_A TRPRS, tryptophanyl-tRN 98.5 3.1E-07 1E-11 96.7 10.0 176 97-338 4-199 (328)
38 1yi8_B Tryptophanyl-tRNA synth 98.4 3.3E-07 1.1E-11 97.3 7.5 182 95-338 23-222 (351)
39 2el7_A Tryptophanyl-tRNA synth 98.3 1.2E-06 4.2E-11 92.4 9.7 177 97-338 4-202 (337)
40 2v0c_A Aminoacyl-tRNA syntheta 98.1 5E-06 1.7E-10 97.8 10.4 94 97-190 36-151 (878)
41 4arc_A Leucine--tRNA ligase; l 98.1 6.9E-06 2.4E-10 96.5 10.2 94 97-190 56-171 (880)
42 1wkb_A Leucyl-tRNA synthetase; 98.1 7E-06 2.4E-10 95.7 10.1 95 96-190 36-178 (810)
43 1ile_A Ilers, isoleucyl-tRNA s 97.9 6E-06 2.1E-10 96.5 3.9 94 97-190 41-173 (821)
44 3jxe_A Tryptophanyl-tRNA synth 97.8 0.00038 1.3E-08 74.8 15.8 183 84-338 62-260 (392)
45 1ffy_A Isoleucyl-tRNA syntheta 97.8 2.8E-05 9.6E-10 91.9 7.4 94 97-190 51-178 (917)
46 1gax_A Valrs, valyl-tRNA synth 97.7 6.3E-05 2.2E-09 88.3 9.2 94 97-190 37-168 (862)
47 3tzl_A Tryptophanyl-tRNA synth 97.7 2.6E-05 9E-10 81.8 4.6 87 104-199 11-105 (322)
48 1wz2_A Leucyl-tRNA synthetase; 97.6 5.4E-05 1.8E-09 90.0 6.8 94 97-190 37-178 (967)
49 3hzr_A Tryptophanyl-tRNA synth 97.6 0.00028 9.5E-09 75.7 11.3 105 73-181 61-176 (386)
50 2ip1_A Tryptophanyl-tRNA synth 97.4 0.001 3.4E-08 72.4 13.1 189 82-338 89-302 (432)
51 3hv0_A Tryptophanyl-tRNA synth 97.4 0.00056 1.9E-08 73.6 10.7 92 83-177 62-166 (393)
52 1h3f_A Tyrosyl-tRNA synthetase 97.3 0.00026 8.7E-09 77.1 6.2 192 82-338 24-239 (432)
53 2cyc_A Tyrosyl-tRNA synthetase 97.2 0.0062 2.1E-07 65.0 15.6 110 83-199 21-147 (375)
54 3i05_A Tryptophanyl-tRNA synth 97.2 0.00082 2.8E-08 72.3 8.8 88 83-173 67-165 (395)
55 3tze_A Tryptophanyl-tRNA synth 97.1 0.0024 8.1E-08 69.0 11.3 74 97-173 104-188 (406)
56 3vgj_A Tyrosyl-tRNA synthetase 96.9 0.012 4.1E-07 62.8 14.7 87 82-172 43-143 (373)
57 2jan_A Tyrosyl-tRNA synthetase 96.9 0.019 6.6E-07 62.4 16.4 189 83-338 21-238 (432)
58 2j5b_A Tyrosyl-tRNA synthetase 96.8 0.0052 1.8E-07 65.0 10.9 90 82-173 27-128 (348)
59 1r6t_A Tryptophanyl-tRNA synth 96.7 0.0059 2E-07 67.2 10.5 51 288-338 303-356 (477)
60 3a04_A Tryptophanyl-tRNA synth 96.3 0.0078 2.7E-07 64.2 8.6 116 69-200 51-176 (372)
61 1r6u_A Tryptophanyl-tRNA synth 96.3 0.013 4.4E-07 63.8 10.2 88 83-173 96-195 (437)
62 3p0j_A Tyrosyl-tRNA synthetase 96.2 0.018 6.1E-07 66.1 11.3 189 82-338 27-237 (690)
63 1jil_A Tyrrs, tyrosyl-tRNA syn 96.1 0.17 5.8E-06 54.7 17.8 188 83-338 21-238 (420)
64 2pid_A Tyrosyl-tRNA synthetase 95.6 0.075 2.6E-06 56.3 12.1 51 288-338 210-261 (356)
65 2ts1_A Tyrosyl-tRNA synthetase 95.2 0.37 1.3E-05 52.1 16.1 51 288-338 185-237 (419)
66 1ile_A Ilers, isoleucyl-tRNA s 95.2 0.024 8.3E-07 66.2 7.3 68 318-401 577-645 (821)
67 3foc_A Tryptophanyl-tRNA synth 94.9 0.027 9.1E-07 61.5 6.1 108 83-201 79-202 (451)
68 3prh_A Tryptophanyl-tRNA synth 94.5 0.073 2.5E-06 57.1 8.0 91 97-199 38-137 (388)
69 1wkb_A Leucyl-tRNA synthetase; 93.7 0.074 2.5E-06 61.9 6.7 62 317-394 635-697 (810)
70 1wz2_A Leucyl-tRNA synthetase; 93.5 0.12 4E-06 61.6 7.9 60 319-394 638-697 (967)
71 3sz3_A Tryptophanyl-tRNA synth 93.2 0.096 3.3E-06 55.2 6.0 93 96-199 8-108 (341)
72 3n9i_A Tryptophanyl-tRNA synth 92.3 0.15 5.1E-06 53.8 5.9 92 96-199 17-117 (346)
73 1ffy_A Isoleucyl-tRNA syntheta 91.2 0.37 1.2E-05 57.1 8.2 59 318-393 581-640 (917)
74 1gax_A Valrs, valyl-tRNA synth 91.2 0.16 5.6E-06 59.6 5.2 61 318-394 514-575 (862)
75 4arc_A Leucine--tRNA ligase; l 90.5 0.35 1.2E-05 57.0 7.1 46 331-392 639-684 (880)
76 3p0j_A Tyrosyl-tRNA synthetase 89.4 0.73 2.5E-05 52.9 8.5 83 99-182 385-483 (690)
77 2yxn_A Tyrosyl-tRNA synthetase 88.4 0.64 2.2E-05 48.4 6.5 88 82-172 21-130 (322)
78 1y42_X Tyrosyl-tRNA synthetase 83.6 5.6 0.00019 42.5 10.9 52 83-137 53-105 (392)
79 2v0c_A Aminoacyl-tRNA syntheta 83.3 1.2 4.2E-05 52.3 6.2 48 330-393 636-683 (878)
80 1y42_X Tyrosyl-tRNA synthetase 29.6 48 0.0017 35.2 4.9 51 288-338 232-300 (392)
81 3foc_A Tryptophanyl-tRNA synth 26.6 30 0.001 37.6 2.7 48 291-338 290-340 (451)
82 2yxn_A Tyrosyl-tRNA synthetase 25.9 41 0.0014 34.7 3.5 51 288-338 191-242 (322)
83 3fnr_A Arginyl-tRNA synthetase 23.5 47 0.0016 36.1 3.5 46 146-191 146-191 (464)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.1e-149 Score=1239.21 Aligned_cols=526 Identities=49% Similarity=0.866 Sum_probs=495.5
Q ss_pred HHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCC
Q 007060 83 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 83 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 161 (619)
..+++++|+.. .++||||||||||||||||||||||+||++||+|||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 67888888874 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc----ccCCCCCCCCChHHHHHHHHHHhcccccCCceE
Q 007060 162 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 162 pd-~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
|+ .+++||+||++||++|++||++|+||+|+||+++|+++|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 6899999999999999999999999999999999999985 578899999999999999999999999889999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCC-
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 315 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~- 315 (619)
||+|+++.+++.+|+|||+||+...+||+||++|+||||||||||||||+|||||||||+||++|+++|.||+++|||+
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHH
Q 007060 316 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 316 ~P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
.|.+|+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++|||++++.+++++|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCC
Q 007060 396 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 475 (619)
Q Consensus 396 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 475 (619)
|..+++.++|+||||||+||.|+|+| +..+.+++|+||+ ++++|+|.++|++.||||++||++.++|+||||+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~ 407 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGK 407 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTS
T ss_pred HhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCC
Confidence 99999999999999999999999998 5556788999988 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEEEeEecCCCCCEEEEEEEEcCCC-------CCCCCeeEEeccCCCCCCCCeeEEEEecccccCCCCCC
Q 007060 476 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 548 (619)
Q Consensus 476 ~v~l~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~-------~~k~k~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~ 548 (619)
+|+|+++|+|+|++++ +|++|+|++|+|+|++++ .+|+|++|||||+ .++++||||+||+||++++|+
T Consensus 408 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~----~~~~~~~~~~yd~L~~~~~p~ 482 (553)
T 1qtq_A 408 EVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA----AHALPVEIRLYDRLFSVPNPG 482 (553)
T ss_dssp EEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEES----TTCEEEEEEEECCSBSSSCGG
T ss_pred EEEeccEEEEEEEEEE-EcCCCCEEEEEEEEecccccCCCccccccCCEEEEeec----CCCEeEEEEecccccCCCCCC
Confidence 9999999999999999 899999999999999863 3789999999998 578999999999999999998
Q ss_pred CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEeeecCCCCCCCCCC
Q 007060 549 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 618 (619)
Q Consensus 549 ~~~~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~~v~n~~v~lk~~~~k~~ 618 (619)
++++|+++|||+|+.++ .|++||++.++++|++|||||.||||||+ +|+++++||||||+||++|+|.+
T Consensus 483 ~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~vfnr~v~l~~~~~~~~ 552 (553)
T 1qtq_A 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVG 552 (553)
T ss_dssp GSTTGGGGBCTTSEEEE-EEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCEEEEEEECCCC-----
T ss_pred cCcchhhhcCCcchhhe-eeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCeeEEeEEEcccchhhhc
Confidence 66899999999999987 68999999999999999999999999997 89999999999999999999853
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=2.3e-144 Score=1240.22 Aligned_cols=523 Identities=41% Similarity=0.732 Sum_probs=492.0
Q ss_pred HHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCC
Q 007060 83 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 83 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 161 (619)
.++++++|... .+.||||||||||||||||||||||+||++||+|||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 67899998874 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc----ccCCCCCCCCChHHHHHHHHHHhcccccCCceE
Q 007060 162 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 162 pd-~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
|| .++|||+||++|+++|++||++|+||+|+||+++|+++|+ ++++|+||+++++|++.+|++|++|.+.+|++|
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 6899999999999999999999999999999999999876 377889999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCC
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 316 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~ 316 (619)
||+|+++.+++.+|+|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|+++|.||+++|||+.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CcEEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHH
Q 007060 317 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 317 -P~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
|.+|+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++.++.++++.|++++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHhhcCCCceeeEecceeEEEEeCCCcceeecccccCCCCCCC-------------------CCCceEEecccccccee
Q 007060 396 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNVVYIE 456 (619)
Q Consensus 396 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-------------------~~~G~r~v~~~~~iyIe 456 (619)
|..+++.++|+||||||+||.|+|+|++. .+++|+||+ + +++|+|.|+|+++||||
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie 446 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIE 446 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEE
T ss_pred HhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEcCeEEEE
Confidence 99999999999999999999999998865 788999998 6 89999999999999999
Q ss_pred cccccccCCcCccCcCCCCEEEEeeeeeEEEEEeEecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEE
Q 007060 457 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVR 536 (619)
Q Consensus 457 ~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~~k~k~~I~Wv~~~~~~~~~v~~e~r 536 (619)
++||++.++|+||||+||++|+|+++|+|+|++++ +|++|+|++|+|+|.++. +|+|++|||||+ .++++||||
T Consensus 447 ~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~----~~~~~~e~r 520 (851)
T 2hz7_A 447 RDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSA----ERALPAEFR 520 (851)
T ss_dssp GGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEET----TTCEEEEEE
T ss_pred HHHhhhcccccceecCCCCEEEecCeEEEEEEEEE-ecCCCCEEEEEEEEcccC-CccCceEEEeec----CCCeeEEEE
Confidence 99999999999999999999999999999999999 888999999999997554 689999999998 578999999
Q ss_pred ecccccCCCCCCC----------------------------ccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEe
Q 007060 537 LFEKLFNSENPAE----------------------------LDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 588 (619)
Q Consensus 537 ~y~~Lf~~~~p~~----------------------------~~~~~~~in~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~ 588 (619)
+||+||++++|++ +++|+++|||+|++++ .|++||++.++++|++|||||+
T Consensus 521 ~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~ 599 (851)
T 2hz7_A 521 LYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQ 599 (851)
T ss_dssp EECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEE-EEEECGGGGGSCTTCEEEETTT
T ss_pred ecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceee-eeEEchhhhhCCCCCEEEEEEe
Confidence 9999999999975 3589999999999987 6899999999999999999999
Q ss_pred eeEEEec------CCCCCceEEeeecCCCCCCCCC
Q 007060 589 GYFAVDK------DSTPEKLVFNRTVTLKDSFPKG 617 (619)
Q Consensus 589 Gyf~vD~------~~~~~~~v~n~~v~lk~~~~k~ 617 (619)
||||||+ ||+++++|||||||||++|+|+
T Consensus 600 Gyf~~D~~~~~~~~~~~~~~vfnr~v~lk~~~~~~ 634 (851)
T 2hz7_A 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGKQ 634 (851)
T ss_dssp EEEEECHHHHHCC------CEEEEEECSSCCC---
T ss_pred eEEEEccCCCccCCCCCCceEEEeecccccchhhc
Confidence 9999996 8999999999999999999983
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.3e-125 Score=1047.26 Aligned_cols=455 Identities=27% Similarity=0.433 Sum_probs=413.3
Q ss_pred hhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCcCCCc
Q 007060 90 LEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTS 169 (619)
Q Consensus 90 ~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~~~qS 169 (619)
|..++|+|+|||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||+++|||
T Consensus 90 L~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qS 169 (553)
T 3aii_A 90 LAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQS 169 (553)
T ss_dssp CSSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGG
T ss_pred CCCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCC
Q 007060 170 DYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 249 (619)
Q Consensus 170 d~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~ 249 (619)
+||++|+++|++||++|+||+|+||+++|++.|..+++|+||++|++|++++|++|++| .+|+++||+|+++.++|.+
T Consensus 170 dr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 170 DRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGG
T ss_pred cCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCC
Confidence 99999999999999999999999999999999988899999999999999999999999 5678999999999999999
Q ss_pred CCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEEeccccCCCC
Q 007060 250 MYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN 329 (619)
Q Consensus 250 ~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rLn~~g 329 (619)
++|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|+++|.||+++||++.|.||||++||++|
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g 327 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDD 327 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC---
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHhhcCCCceeeE
Q 007060 330 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVV 409 (619)
Q Consensus 330 ~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av 409 (619)
+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++|||+++..++++.|++++|+.+++.+||+|+|
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V 407 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFA 407 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEE
T ss_pred ceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEeCCCcceeecccccCCCCCCCCCCceEEeccccccceecccccccCCcCccCcCCCCEEEEeeeeeEEEEE
Q 007060 410 LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTE 489 (619)
Q Consensus 410 ~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~ 489 (619)
+||+||+|+|+|.. +.+++|+||+ +|++|+|+|+|+++||||++||+ + ++|||+++|||+|++
T Consensus 408 ~~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i~~~~ 470 (553)
T 3aii_A 408 ADPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNVIYSG 470 (553)
T ss_dssp ESEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEEEEET
T ss_pred cCcEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEEEEEE
Confidence 99999999999832 5788999998 79999999999999999999996 5 789999999999986
Q ss_pred eEecCCCCCEEEEEEEEcCCC---CCCCC-eeEEeccCCCCCCCCeeEEEEecccccCCCCCCCccCccccCCCCCceee
Q 007060 490 VILSDDKETILHIRAEYDPSK---KTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVI 565 (619)
Q Consensus 490 ~~~~d~~g~v~~l~~~~~~~~---~~k~k-~~I~Wv~~~~~~~~~v~~e~r~y~~Lf~~~~p~~~~~~~~~in~~S~~~~ 565 (619)
+. |+|++++ .+|+| ++|||||+ .++++|+||.+ ++ . +.
T Consensus 471 ~~------------~~~~~~~~~~~~k~k~~~i~Wv~~----~~~~~~~~~~~---------~~------------~-~~ 512 (553)
T 3aii_A 471 GE------------LRYHSEGIEEARELGASMIHWVPA----ESALEAEVIMP---------DA------------S-RV 512 (553)
T ss_dssp TE------------EEEEECSHHHHHHHTCEEECCEEG----GGCEEEEEECT---------TS------------C-EE
T ss_pred EE------------EEEeCCchhhcccCCCCEEEEccC----CCceEEEEECC---------CC------------c-EE
Confidence 42 7787653 25677 89999997 46799998843 21 1 33
Q ss_pred ceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEE
Q 007060 566 PEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 604 (619)
Q Consensus 566 ~~a~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~ 604 (619)
.|++||++.++++|++|||||.||||||+++.+ +||
T Consensus 513 -~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~~~ 548 (553)
T 3aii_A 513 -RGVIEADASELEVDDVVQLERFGFARLDSAGPG--MVF 548 (553)
T ss_dssp -EEEECGGGGGCCTTCEEEETTTEEEEEEECSSS--EEE
T ss_pred -EEEEchhHhcCCCCCEEEEEEeEEEEEeeCCCc--EEE
Confidence 689999999999999999999999999987544 554
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=8.1e-78 Score=667.25 Aligned_cols=312 Identities=21% Similarity=0.254 Sum_probs=273.6
Q ss_pred HHHHHHHhhhcC--CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCC
Q 007060 83 KEVLDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 160 (619)
Q Consensus 83 ~~~~~~~~~~~~--g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi 160 (619)
+..++.|.+..+ ..||||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|+++|+||||
T Consensus 9 ~g~~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 9 MGTLEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGI 88 (512)
T ss_dssp ---------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTC
T ss_pred ccchhhcccCCCCCCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCC
Confidence 334444444432 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHH
Q 007060 161 EPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFE 223 (619)
Q Consensus 161 ~pd~---------~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe 223 (619)
+||+ +|+||+|++.|+++|++||++|+||+|+||++|+++.|+ ++|++.||+++.++..
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~---- 164 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVE---- 164 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHH----
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhh----
Confidence 9996 469999999999999999999999999999999988775 4678899999876532
Q ss_pred HHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCC----cceecccccccceeeeCCCCcceeecccccc
Q 007060 224 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGD----KWCIYPSYDYAHCIVDSIENITHSLCTLEFE 299 (619)
Q Consensus 224 ~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~----~w~i~PTY~fa~~VdD~l~gITHviRg~E~~ 299 (619)
.+....+++++|+|+++. ++..++|+|.+++.+..+..+|| +++|+||||||||||||+|||||||||+||+
T Consensus 165 ---~~~~~~~~~~~R~k~~~~-~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l 240 (512)
T 4gri_A 165 ---NALIKKIKPVVRFKIPLE-GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWV 240 (512)
T ss_dssp ---HHHHTTCCCEEEECCCSS-CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred ---hhhhhhccceeeeccccc-CCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccc
Confidence 233445579999999864 57789999999999887777777 4578999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcC
Q 007060 300 TRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 378 (619)
Q Consensus 300 ~~~~~q~~l~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG 378 (619)
+||++|.||+++|||..|.+.|++. ++.+|+|||||++. .+|.+||+.||.|+||.|||+.||
T Consensus 241 ~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 241 SSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp GGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHcCCCCCeEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhC
Confidence 9999999999999999998777775 68899999999987 589999999999999999999999
Q ss_pred ccCCCcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 379 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 379 ~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
||..+. -++.+++++++.|....+++++++||+.||.|.|
T Consensus 305 ws~~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 305 WSYDDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFN 344 (512)
T ss_dssp BCSSSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHH
T ss_pred CCCccc-chhhhHHHHHHHHHhcCCCCCCccccHHHHHHHH
Confidence 998864 4677889999999999999999999999999887
No 5
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=6.1e-76 Score=644.72 Aligned_cols=288 Identities=24% Similarity=0.342 Sum_probs=261.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCCc---------C
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 166 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~~---------~ 166 (619)
+|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999975 8
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcc--cCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEec--
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD-- 242 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~--~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d-- 242 (619)
+||+|++.|+++|++|+++|+||+|+||++++++.|+. +|+++||++|.+|+++ .|.+|. +++||+|++
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCCC
Confidence 99999999999999999999999999999999988763 7999999999998765 355553 589999987
Q ss_pred ------------CCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHH
Q 007060 243 ------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 243 ------------~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~ 310 (619)
+..++..+.|+|++|. + |+||||||||||||+|||||||||.||++|+++|.||++
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------d-----g~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 221 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKS-------D-----GYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYR 221 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECT-------T-----SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CceEEEeccceeEeecccCCCCeEEEec-------C-----CCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHH
Confidence 3334556788888887 4 499999999999999999999999999999999999999
Q ss_pred HhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHh
Q 007060 311 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 389 (619)
Q Consensus 311 aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~ 389 (619)
+||++.|.+.|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+..+. .++.
T Consensus 222 alg~~~p~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~ 284 (468)
T 1j09_A 222 AFGWEAPRFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIF 284 (468)
T ss_dssp HHTCCCCEEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCC
T ss_pred HcCCCCCeEEEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCC
Confidence 99999997666665 59999999999997 489999999999999999999999998654 2445
Q ss_pred HHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 390 RLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 390 ~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
.++++++.|....+++.+++|||.||.|.|
T Consensus 285 ~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 285 TLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred CHHHHHhhCChhhcCccccccChHHhhhhc
Confidence 678999999999999999999999999988
No 6
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=2.1e-75 Score=643.85 Aligned_cols=294 Identities=23% Similarity=0.303 Sum_probs=265.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 174 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~ 174 (619)
+|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecC---
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM--- 243 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~--- 243 (619)
|+++|++|+++|+||+|+||+++|++.|+ +.|+++||++|.+|++ +.|.+|. ++++|+|++.
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence 99999999999999999999999998764 3699999999998875 3455554 5899999863
Q ss_pred -----------CCCCCCC-CceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHH
Q 007060 244 -----------QNDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 311 (619)
Q Consensus 244 -----------~~~n~~~-~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~a 311 (619)
..++..+ .|||+||... ++|+|+||||||||||||+|||||||||+||++||++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP-------RGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC-------TTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC-------CCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 2345678 9999999833 22567999999999999999999999999999999999999999
Q ss_pred hCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhH
Q 007060 312 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 390 (619)
Q Consensus 312 Lg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~ 390 (619)
||++.|.+.|.+. ||.+|+|||||+++ .+|++||++||+|+||+|||+.+||+++....++.+
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999997777776 79999999999997 479999999999999999999999997222236677
Q ss_pred HHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 391 LEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 391 Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
++++++.|....+++.+++|||.||.|.|
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHH
Confidence 89999999999999999999999999888
No 7
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=5.8e-75 Score=640.06 Aligned_cols=298 Identities=20% Similarity=0.272 Sum_probs=271.0
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC--------
Q 007060 93 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 164 (619)
Q Consensus 93 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-------- 164 (619)
++++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc-------ccCCCCCCCCChHHHHHHHHHHhcccccCC-ce
Q 007060 165 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 235 (619)
Q Consensus 165 -~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~-------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~ 235 (619)
+++||+|++.|+++|++||++|+||+|+||+++|++.|. ++|+++||+++.+|+++.+ .+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~--------~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL--------AEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH--------HTTCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh--------ccCCCc
Confidence 899999999999999999999999999999999988762 5799999999999876532 234 47
Q ss_pred EEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcce-----ecccccccceeeeCCCCcceeecccccccchHHHHHHHH
Q 007060 236 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 236 ~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~-----i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~ 310 (619)
+||+|++ .++..+.|.|.+++.+.++.. ++|+ |+||||||||||||+|||||||||.||++++++|.||++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred eEEEECC--CCceEEEecccceEeeccccc--CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 9999987 567788999999998876643 3554 699999999999999999999999999999999999999
Q ss_pred Hh-----CCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCc
Q 007060 311 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 384 (619)
Q Consensus 311 aL-----g~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~ 384 (619)
+| |+..|.+.|++. +|.+|+|||||+++ .+|.+||++||+|+||++||+.|||+..+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99 999997666665 68999999999997 589999999999999999999999998764
Q ss_pred chhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 385 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 385 ~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
.++.+++++++.|....+++.+++||+.||.|.|
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N 328 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALN 328 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHH
T ss_pred -cccCCHHHHHhhCChhhcCccccccCHHHHHHhh
Confidence 3566778999999999999999999999999888
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=5.2e-74 Score=629.97 Aligned_cols=286 Identities=24% Similarity=0.354 Sum_probs=248.8
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhHH
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQ 173 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~ 173 (619)
++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~ 103 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMD 103 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHH
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCCCCCCChHHHHHHHHHHhcccccCC-ceEEEEEec--
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQD-- 242 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~~lR~K~d-- 242 (619)
.|++++++||++|+||+|+||+++|++.|+ ++|+++||+++.++. . ...+| ++++|||++
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~-~~~~g~~~~~R~k~~~~ 174 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------P-EPPAGVAPVLRFRNPLT 174 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------C-CCCTTCCCEEEECCCCS
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------h-hhhcCCCceEEEecCCC
Confidence 999999999999999999999999988764 469999999985421 1 12334 578999864
Q ss_pred ------------CCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHH
Q 007060 243 ------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 243 ------------~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~ 310 (619)
+.+++..++|+|++|. +| +||||||||||||+|||||||||+||++|||+|.||++
T Consensus 175 ~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------DG-----~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~ 242 (490)
T 4g6z_A 175 GTVAWDDAVKGRVEISNEELDDLVVARP-------DG-----TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILR 242 (490)
T ss_dssp SEEEEEETTTEEEEEEGGGCCCCEEECT-------TS-----CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CcEEEEEeeeeeeeeccccCCCeEEEee-------CC-----CccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHH
Confidence 2234567889999987 55 89999999999999999999999999999999999999
Q ss_pred HhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHh
Q 007060 311 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 389 (619)
Q Consensus 311 aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~ 389 (619)
+|||..|.+.|.+. +|.+|+|||||++. .||++||++||+|+||+|||+.|||+..+. ++.
T Consensus 243 aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~--e~~ 304 (490)
T 4g6z_A 243 ALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDA--EIF 304 (490)
T ss_dssp HTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTC--CCC
T ss_pred HcCCCCCeEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCc--ccc
Confidence 99999997666554 48899999999986 699999999999999999999999998754 567
Q ss_pred HHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 390 RLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 390 ~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
++++++..|....+++.+++||+.||.|.|
T Consensus 305 s~~eli~~F~~~~~~~~~~~fd~~KL~~~N 334 (490)
T 4g6z_A 305 TREQFVEWFDLEHLGKSPAQYDHNKLNWLN 334 (490)
T ss_dssp CHHHHHHHCCGGGBCSSCEECCHHHHHHHH
T ss_pred CHHHHHhhCCHhhCCCCCCccCHHHHHHHH
Confidence 789999999999999999999999999888
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=6.9e-72 Score=615.03 Aligned_cols=290 Identities=22% Similarity=0.319 Sum_probs=248.9
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-------
Q 007060 92 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK------- 164 (619)
Q Consensus 92 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~------- 164 (619)
.+.++|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++++++|+++|+|||++||+
T Consensus 21 ~~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 21 RCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ----CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred hcCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 3445799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEec
Q 007060 165 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 242 (619)
Q Consensus 165 --~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d 242 (619)
+++||+|++.|+++|++|+++|+||+|+||+++|++.+.+.|++. + +.+..|. ++++|+|++
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcCC----CceEEEECC
Confidence 489999999999999999999999999999999987644556543 1 2233332 589999986
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCCcc-----eecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCC
Q 007060 243 MQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 317 (619)
Q Consensus 243 ~~~~n~~~~D~V~~R~~~~~h~~~g~~w-----~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P 317 (619)
.++..+.|.|.+++....+.. ++| +|+||||||||||||+|||||||||+||++||++|.||+++|||+.|
T Consensus 165 --~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P 240 (488)
T 3afh_A 165 --PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240 (488)
T ss_dssp --SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC
T ss_pred --CCceeEEeccceeEeecCCCC--CCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC
Confidence 344445555555554333221 223 36999999999999999999999999999999999999999999999
Q ss_pred cEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHH
Q 007060 318 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 318 ~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r 396 (619)
.+.|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+..+. ++.+++++++
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~ 302 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQ 302 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGG
T ss_pred eEEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHh
Confidence 7666665 49999999999997 579999999999999999999999998765 6677899999
Q ss_pred HHhhcCCCceeeEecceeEEEEe
Q 007060 397 EELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 397 ~~~~~~~~R~~av~dp~kl~i~n 419 (619)
.|....++|.+++|||.||.|.|
T Consensus 303 ~f~~~~i~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 303 SFDPKDISNKGVIFDYQKLEWVN 325 (488)
T ss_dssp GCCGGGSCSSCEECCHHHHHHHH
T ss_pred hCChhhcCccccccChHHhhhcc
Confidence 99999999999999999999887
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=4e-69 Score=604.93 Aligned_cols=287 Identities=22% Similarity=0.328 Sum_probs=244.6
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC---------c
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 165 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------~ 165 (619)
++|+|||||||||+|||||||+|++||++||+|||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCC
Q 007060 166 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 245 (619)
Q Consensus 166 ~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~ 245 (619)
++||+|++.|+++|++|+++|+||+|+||+++|++.+.+.|++. + +.|..|. ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcCC----CceEEEECC--C
Confidence 79999999999999999999999999999999976533444432 1 2233443 589999987 2
Q ss_pred CCCCCCceEEEEEecCCCCCCCCcc-----eecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCcEE
Q 007060 246 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 320 (619)
Q Consensus 246 ~n~~~~D~V~~R~~~~~h~~~g~~w-----~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ 320 (619)
++..+.|.|.+++....+. -++| +|+||||||||||||+|||||||||.||++|+++|.||+++|||+.|.+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~--~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNST--LEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSS--SCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCceeeecccceeeecccc--CCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEE
Confidence 3333444444443322211 1122 25999999999999999999999999999999999999999999999655
Q ss_pred eccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHHHh
Q 007060 321 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 399 (619)
Q Consensus 321 ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 399 (619)
|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.|||+.... ++.+++++++.|.
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhhCC
Confidence 5554 48999999999997 579999999999999999999999998765 5666788999999
Q ss_pred hcCCCceeeEecceeEEEEe
Q 007060 400 NKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 400 ~~~~~R~~av~dp~kl~i~n 419 (619)
...++|.+++|||.||.|.|
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N 429 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVN 429 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhh
Confidence 99999999999999999888
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-68 Score=583.00 Aligned_cols=288 Identities=23% Similarity=0.310 Sum_probs=258.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC---------cC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 166 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------~~ 166 (619)
-|||||||||||+|||||||+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||++||+ ++
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 48
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhc--------ccCCCC--CCCCChHHHHHHHHHHhcccccCCceE
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~--------~~~~~~--~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
+||+|++.|+++|++|+++|+||+|+||++++++.|+ +.|++. ||+++.+|+.+ .|.+|. +++
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~ 165 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPA 165 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCE
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cce
Confidence 9999999999999999999999999999999988764 368888 99999988764 455554 579
Q ss_pred EEEEecC-------------CCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchH
Q 007060 237 LRMKQDM-------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 303 (619)
Q Consensus 237 lR~K~d~-------------~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~ 303 (619)
+|+|++. ...+..+.|+|++|. + |+|||||||+||||+|||||||||.||++|++
T Consensus 166 iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------D-----G~ptY~~a~vvDD~~~githvirG~D~~~~t~ 233 (481)
T 2o5r_A 166 VFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------N-----GLPTYNFACVVDDMLMEITHVIRGDDHLSNTL 233 (481)
T ss_dssp EEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------T-----SCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------C-----CCcchhhHHHHHHHhCCCCeEEEChhHHHhHH
Confidence 9999762 224456678888886 4 49999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCC
Q 007060 304 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382 (619)
Q Consensus 304 ~q~~l~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~ 382 (619)
+|.|++++||+..|.+.|++. |+.+|+|||||+++ .+|.+||++||+|+||++|+..+||+.+
T Consensus 234 ~q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~ 297 (481)
T 2o5r_A 234 RQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHP 297 (481)
T ss_dssp HHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCT
T ss_pred HHHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999997667665 68999999999997 4899999999999999999999999974
Q ss_pred CcchhHhHHHHHHHHHhhcCCCceeeEecceeEEEEe
Q 007060 383 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419 (619)
Q Consensus 383 ~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~n 419 (619)
.. -++..++++++.|.....++.+++||+.|+.+.|
T Consensus 298 ~~-~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n 333 (481)
T 2o5r_A 298 EG-KELLTLEELISSFSLDRLSPNPAIFDPQKLKWMN 333 (481)
T ss_dssp TC-CCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHH
T ss_pred cc-cccCCHHHHHHhCChhhCCccCcccChHHhhhhC
Confidence 32 1345668899999999999999999999998776
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=1.1e-65 Score=534.89 Aligned_cols=268 Identities=19% Similarity=0.237 Sum_probs=220.7
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCchhchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 007060 94 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 172 (619)
Q Consensus 94 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-~~~qSd~~ 172 (619)
.+.|+|||||||||+|||||||+||+||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCC--------
Q 007060 173 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-------- 244 (619)
Q Consensus 173 ~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~-------- 244 (619)
+.|++++++|+++|+||+|+||+++|++... .|++.||+++.+ | ...++|+|++..
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~ 146 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIGG-IYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTTS-SCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETT
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcCC-CCCCccccCCcC-----------C----CCCcEEEecCCcccceehhh
Confidence 9999999999999999999999999987643 799999998753 1 146888887521
Q ss_pred -----CC-CCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhCCCCCc
Q 007060 245 -----ND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 318 (619)
Q Consensus 245 -----~~-n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg~~~P~ 318 (619)
.. +.++.|+|++|. +| +|||||||+|||++|||||||||.||++|+++|.+|+++||++.|.
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~-------dG-----~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~ 214 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRR-------DG-----LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp TEEEECCHHHHHSCCEEECT-------TS-----CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CcccccCcccCCCCEEEECC-------CC-----CEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe
Confidence 11 135789999986 44 9999999999999999999999999999999999999999999999
Q ss_pred EEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCc--chhHhH-HHHH
Q 007060 319 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLDR-LEYH 394 (619)
Q Consensus 319 ~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~--~~~~~~-Le~~ 394 (619)
++|++++ |.+|+|||||+++..|++. ||+ .++.+|+..+||+.... .++.+. |+++
T Consensus 215 ~~H~pll~~~~g~KLSKR~g~~~v~~~------~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~ 274 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPALPKG------DPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQSA 274 (298)
T ss_dssp EEEECBCCC-------------CCCSS------CCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHHHH
T ss_pred EEEeeeeECCCCCcccccCCccChhcC------Ccc--------------HHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 9999986 9999999999999776542 333 34788999999987763 345443 6789
Q ss_pred HHHHhhcCCCceeeE
Q 007060 395 IREELNKTAPRTMVV 409 (619)
Q Consensus 395 ~r~~~~~~~~R~~av 409 (619)
++.|....+++.+.+
T Consensus 275 ~~~f~~~~~~~~~~~ 289 (298)
T 1nzj_A 275 VKNWRLTAVPESAIV 289 (298)
T ss_dssp HHTCCGGGSCCCSBC
T ss_pred HHhCCHhhCCCCCCc
Confidence 999999999988753
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.96 E-value=2.1e-30 Score=288.35 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=171.0
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCchhch--------------------------
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEAEK-------------------------- 144 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~re~-------------------------- 144 (619)
.+++.-+|||||+|||||+|+|++|+.+|| .++|+|++||||||+.+..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 455555999999999999999999988864 6899999999999954433
Q ss_pred ----HHHHHHHHHHHHHcCCCCCCcCCCch-hHH-HHHHHHHHHHHcC-CcccCCCCHHHHH--------HhhcccCCCC
Q 007060 145 ----KEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIK--------EYREKKMNSP 209 (619)
Q Consensus 145 ----~e~~~~I~edL~wLGi~pd~~~~qSd-~~~-~~ye~A~~LI~~G-~AY~c~cs~eel~--------~~R~~~~~~~ 209 (619)
+++.+.|+++|+||||.||.. +||+ |.+ .|.+++++|+++| .+|.|.+....+. -.+...+...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 459999999999999998876 9999 988 8999999999999 6665542111000 0000122223
Q ss_pred CCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc--e---------ecccccc
Q 007060 210 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW--C---------IYPSYDY 278 (619)
Q Consensus 210 ~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w--~---------i~PTY~f 278 (619)
|+..+.+ . .... ..++|++. ..+++.+.+.| . ++|+|+|
T Consensus 180 ~~~~~~~--~---------~~~~-~~~~~f~~------------------~~g~~~~~d~~~G~g~~~w~~d~~~~~~~l 229 (523)
T 1irx_A 180 HRREAEI--I---------EWDG-GWKVKYKC------------------PEGHEGWVDIRSGNVKLRWRVDWPMRWSHF 229 (523)
T ss_dssp TCCEECE--E---------EECS-SSCEEECC------------------SSSCCCEECTTSSCEEECHHHHHHHHHHHS
T ss_pred hCCcccc--c---------ccCC-CCceeeee------------------cCCCccccCCcCCCCCCCCCcchHhhHHHc
Confidence 4433211 0 0000 12344443 12223333333 2 4567778
Q ss_pred cceeeeCCCCcceeecc--cccccchHHHHHHH-HHhCCCCCcEEeccccCCC--CccccccccccccccCccCCCCCcc
Q 007060 279 AHCIVDSIENITHSLCT--LEFETRRASYFWLL-HALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPC 353 (619)
Q Consensus 279 a~~VdD~l~gITHviRg--~E~~~~~~~q~~l~-~aLg~~~P~~~ef~rLn~~--g~kLSKRk~~~lV~~g~v~gWDDPR 353 (619)
+++|| .+|++|+.+| .+|. .+++ .+||+..|.+.|++++..+ |.|||||+++
T Consensus 230 ~~~vd--~~G~Dh~~~h~s~~~~------~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn--------------- 286 (523)
T 1irx_A 230 GVDFE--PAGKDHLVAGSSYDTG------KEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN--------------- 286 (523)
T ss_dssp CCCBC--CEEHHHHSTTSHHHHH------HHHHHHHHCCCCCBCCEECCEEESCC---------C---------------
T ss_pred CCCCc--CCCcCccCCCcchhhH------HHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC---------------
Confidence 77766 8888888876 4443 3333 6999988876777877666 8999999998
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHh-HHHHHHHHHhhcCCCceeeEecce--eEEEEe
Q 007060 354 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD-RLEYHIREELNKTAPRTMVVLNPL--KVVITN 419 (619)
Q Consensus 354 ~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~-~Le~~~r~~~~~~~~R~~av~dp~--kl~i~n 419 (619)
..|+..++++ |.|+||++||++.|+... ..++++ .|.++.+.+. +..+..+.+++. |+.|.|
T Consensus 287 ~i~~~~~~~~-~~pdalR~~l~~~~~~~~-~~fs~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~n 351 (523)
T 1irx_A 287 VILLSDLYEV-LEPGLVRFIYARHRPNKE-IKIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELR 351 (523)
T ss_dssp CCCHHHHHTT-SCHHHHHHHHHSSCTTSC-EEECCSTTHHHHHHHHH--HHHHHHTTSCC-----CHHH
T ss_pred CCCHHHHHHH-cCHHHHHHHHHhcCCCCC-ceeCcchhHHHHHHHHH--HHHHHHhcccccchhhhhhc
Confidence 3589999998 999999999999888553 457777 7777776652 223344444554 355555
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.94 E-value=6.3e-26 Score=248.85 Aligned_cols=260 Identities=16% Similarity=0.140 Sum_probs=190.2
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCch---h----------chHHHHHHHHHH
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE---A----------EKKEYIDHIEEI 154 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~---r----------e~~e~~~~I~ed 154 (619)
+|+|..-+ +|+|+|++||||||++++.+.+||. |+..|+.+++|+|.. + -...|.+.+.++
T Consensus 20 ~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 20 AGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp TTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34443333 8899999999999999999999994 556999999999953 1 146899999999
Q ss_pred HHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccC------CCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhc
Q 007060 155 VQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 155 L~wLGi~p-d~~~~qSd~~~~~ye~A~~LI~~G~AY~c------~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
++|||+.+ +..+++|+|.+.+.+++++|+++|+||.+ +|..+ + ..|...|+ +++ ++|..
T Consensus 100 ~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~----~--~~yg~lsg-~~~-------~~l~~ 165 (461)
T 1li5_A 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT----D--PTYGVLSR-QDL-------DQLQA 165 (461)
T ss_dssp HHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG----C--TTTTTTTT-C--------------
T ss_pred HHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc----c--cccccccC-CCH-------HHhhc
Confidence 99999996 77789999999999999999999999987 66543 1 22322232 122 23444
Q ss_pred ccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eeccccccccee-eeCCCCcceeec--ccc----cc
Q 007060 228 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLE----FE 299 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~V-dD~l~gITHviR--g~E----~~ 299 (619)
|. |+..+ ....+..|+++|+.....+|.+.++| .++|+||.+|++ .....|.++.|+ |.| |+
T Consensus 166 g~--------rv~~~--~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~ 235 (461)
T 1li5_A 166 GA--------RVDVV--DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHH 235 (461)
T ss_dssp -------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHH
T ss_pred CC--------cccch--hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHH
Confidence 43 22222 12334589999998777778888889 689999999874 344557888998 899 55
Q ss_pred cchHHHHHHHHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcC
Q 007060 300 TRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 378 (619)
Q Consensus 300 ~~~~~q~~l~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG 378 (619)
.+.+.|... ++|.+.|.+|.| ++++++|.|||||+++ +.|+.++.++ |.|++||.|+++..
T Consensus 236 ~~~~aq~~a--~~g~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~~~ 297 (461)
T 1li5_A 236 ENEIAQSTC--AHDGQYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMSGH 297 (461)
T ss_dssp HHHHHHHHH--HSSSCCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHSSC
T ss_pred HHHHHHHHH--hcCCCCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHcCC
Confidence 555555432 258877777876 7899999999999998 5789999987 99999999999854
Q ss_pred ccCCCcchhHhHHHHHHH
Q 007060 379 ISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 379 ~s~~~~~~~~~~Le~~~r 396 (619)
+ ..+..++++.|.+..+
T Consensus 298 ~-~~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 298 Y-RSQLNYSEENLKQARA 314 (461)
T ss_dssp T-TSCEEECHHHHHHHHH
T ss_pred c-CCCCCCCHHHHHHHHH
Confidence 4 4444688887776533
No 15
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=1.8e-25 Score=244.60 Aligned_cols=250 Identities=14% Similarity=0.157 Sum_probs=182.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCCCC
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 163 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~pd 163 (619)
+|+|+|++||||||++++.+.++|. |+..|+..+||+|.. .-..+|++.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999999999999999999983 556999999999952 2246899999999999999986
Q ss_pred C-cCCCchhHHHHHHHHHHHHHcCCccc------CCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceE
Q 007060 164 K-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 236 (619)
Q Consensus 164 ~-~~~qSd~~~~~ye~A~~LI~~G~AY~------c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~ 236 (619)
. .+++|+|.+.+.+++++|+++|+||. ++|.... +.|..-.+ ++. ++|..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~-------~~~~~g~------- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHL-------DELQAGA------- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSC-------C-------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CCh-------HHhhccC-------
Confidence 5 45999999999999999999999994 4554321 22322111 122 2233333
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccceee-eCCCCcceeec--ccc----cccchHHHHHH
Q 007060 237 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCIV-DSIENITHSLC--TLE----FETRRASYFWL 308 (619)
Q Consensus 237 lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~~Vd-D~l~gITHviR--g~E----~~~~~~~q~~l 308 (619)
|+..+ ....+..||++||...+.+|.|.++| .|.|+||+.|++. ....|-+..|+ |.| |+.|...|..
T Consensus 171 -r~~~~--~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~- 246 (462)
T 3tqo_A 171 -RVEVS--DSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSE- 246 (462)
T ss_dssp ---------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHH-
T ss_pred -ccccc--cccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHH-
Confidence 33332 23455689999999999999999999 8999999999743 34445555554 344 4455555532
Q ss_pred HHHhCCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchh
Q 007060 309 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 387 (619)
Q Consensus 309 ~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~ 387 (619)
.+.|.+.+.+|.| ++++++|.|||||++| +.|++.+.++ |.|++||-|+++..+..+ ..++
T Consensus 247 -a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~yr~~-l~fs 308 (462)
T 3tqo_A 247 -AGEEKPFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHYRNP-LSYS 308 (462)
T ss_dssp -HHHSSCCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCTTSC-EEEC
T ss_pred -HHcCCCcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCCCCC-cCcC
Confidence 2347666788887 5789999999999998 5799999986 999999999998877554 3577
Q ss_pred HhHHHHH
Q 007060 388 LDRLEYH 394 (619)
Q Consensus 388 ~~~Le~~ 394 (619)
.+.|++.
T Consensus 309 ~~~l~~a 315 (462)
T 3tqo_A 309 KENLENG 315 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.90 E-value=1.7e-23 Score=226.60 Aligned_cols=259 Identities=15% Similarity=0.110 Sum_probs=175.0
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCch-------------hchHHHHHHHHHHHHHcCCC
Q 007060 100 RFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 100 RFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~ 161 (619)
-.+|+|+|++||||+|++++.+.+||. |+..|+..+||.+.. .....|.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 448999999999999999999999995 677999999999843 22467899999999999999
Q ss_pred -CCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-----HHHHhhcccCCCCCCCCChHHHHHHHHHHhccccc-CCc
Q 007060 162 -PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-----EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE-EGK 234 (619)
Q Consensus 162 -pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~e-----el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~-~g~ 234 (619)
+|..+++|+|.+.+.+..++|+++|.+|.+.+..+ .+.++ ..|... .....++ |..+..+ .++
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~--~~~g~l-~~~~~~~-------~~~~~~~~~~~ 193 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADAT--AQFGYE-SGYDRDT-------MLTLFAERGGD 193 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSS--TTTTTT-TCCCHHH-------HHHHHHHTTCC
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhh--hhhHhh-cCCCHHH-------HHHHHhhcccc
Confidence 88878889999999999999999999998775410 01111 001100 1122332 2222100 011
Q ss_pred eEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-eecccccccc----------eeeeCCCCcceeecccccccchH
Q 007060 235 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETRRA 303 (619)
Q Consensus 235 ~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w-~i~PTY~fa~----------~VdD~l~gITHviRg~E~~~~~~ 303 (619)
. + ........|+++|++..+.+|.|.++| .++|.||..| ++|.|..|+.|+. -|+.+.+
T Consensus 194 ~------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~ 263 (414)
T 3c8z_A 194 P------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIF---PHHEYSA 263 (414)
T ss_dssp T------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTT---THHHHHH
T ss_pred c------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccccc---HHHHHHH
Confidence 0 0 112334579999999877788887778 6899999887 5677777777765 3555555
Q ss_pred HHHHHHHHh-CC-CCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCcc
Q 007060 304 SYFWLLHAL-GL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 380 (619)
Q Consensus 304 ~q~~l~~aL-g~-~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s 380 (619)
.| ..++ |. ..+.+|-+ ++++++|.|||||+++ +.++..+.++||.|+++|-|+++ +-.
T Consensus 264 a~---~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~ 324 (414)
T 3c8z_A 264 AH---AESVTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHY 324 (414)
T ss_dssp HH---HHHHHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCT
T ss_pred HH---HHHhcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCc
Confidence 44 3344 76 44446766 7999999999999998 57999999999999999999998 444
Q ss_pred CCCcchhHhHHHHHHHH
Q 007060 381 RSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 381 ~~~~~~~~~~Le~~~r~ 397 (619)
..+..++++.|.+..+.
T Consensus 325 ~~d~~fs~~~l~~~~~~ 341 (414)
T 3c8z_A 325 REDRFWSNEVLDEANAR 341 (414)
T ss_dssp TSCBCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 45556888888776553
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.89 E-value=8.7e-23 Score=224.94 Aligned_cols=254 Identities=14% Similarity=0.094 Sum_probs=164.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Cc-------------hhchHHHHHHHHH
Q 007060 102 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NP-------------EAEKKEYIDHIEE 153 (619)
Q Consensus 102 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp-------------~re~~e~~~~I~e 153 (619)
+|+|+|++||||||++++.+.++| .|...|+..|+|+ +. ..-..+|++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788999999999999999998888 3567899999998 32 1124689999999
Q ss_pred HHHHcCCCCCC-cCCCchhHHHHHHHHHHHHHcCCcccC-----CCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhc
Q 007060 154 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 154 dL~wLGi~pd~-~~~qSd~~~~~ye~A~~LI~~G~AY~c-----~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
+++.||+.++. .+.+++|.+.+.++.++|+++|+||.- +|... + +.| ..+|.. ++ -++|..
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~----f--~~y----G~ls~~-~~--~~~~~~ 195 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC----F--KSY----GEMAGI-DL--IDKDMT 195 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG----C--TTT----TTTTC------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc----c--CCc----cccCCC-Ch--hhhhcc
Confidence 99999999764 567899999999999999999999953 33322 1 122 223321 11 034554
Q ss_pred ccccCCceEEEEEecCCCCCCCCCceEEEEE--ec-CCCCCCCCcc-eeccccccccee-eeCCCCcceeec--ccccc-
Q 007060 228 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRI--KF-TPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLEFE- 299 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~--~~-~~h~~~g~~w-~i~PTY~fa~~V-dD~l~gITHviR--g~E~~- 299 (619)
|. |..+ .....+..||++|+. .. ...|.|.++| .|+|.||..|+. .....|-+-.|+ |.|++
T Consensus 196 g~--------r~~~--~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLif 265 (501)
T 3sp1_A 196 LP--------RVDV--DKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIG 265 (501)
T ss_dssp ------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTT
T ss_pred CC--------ccCc--ccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecccccc
Confidence 43 2222 223445689999977 23 3446788999 799999999864 222333333333 45543
Q ss_pred ---cchHHHHHHHHHh-CCCCCcEEec-cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHH
Q 007060 300 ---TRRASYFWLLHAL-GLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 374 (619)
Q Consensus 300 ---~~~~~q~~l~~aL-g~~~P~~~ef-~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl 374 (619)
.+.+.| ..++ |-+.+.+|-| ++++++|.|||||.+| +.|++.+.++||.|++||-||
T Consensus 266 pHheneiAq---s~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~l 327 (501)
T 3sp1_A 266 VHHINEIAI---AECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLC 327 (501)
T ss_dssp THHHHHHHH---HHHHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHH---HHHccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHH
Confidence 444444 3444 5566778988 8999999999999998 579999999999999999999
Q ss_pred HHcCccCCCcchhHhHHHHHHHH
Q 007060 375 QGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 375 ~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
++..+... ..++.+.|++..+.
T Consensus 328 ls~~yr~~-l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 328 LTSHYRNQ-LKFSLDNLQASKIA 349 (501)
T ss_dssp HTSCTTSC-EECCHHHHHHHHHH
T ss_pred HhccCCCC-CccCHHHHHHHHHh
Confidence 98876544 35777777665544
No 18
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.84 E-value=7.3e-21 Score=209.81 Aligned_cols=267 Identities=15% Similarity=0.098 Sum_probs=174.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------chhchHHHHHHHHHHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~w 157 (619)
-+++.-+|+|||+|||||||++++.+.+||. ..|..++++.++| |.....++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999994 5999999999999 666678899999999999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHHHHH-hhcc-c-CCCCCCCCChHHHHHHHHHHhc
Q 007060 158 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKE-YREK-K-MNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 158 LGi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c-----~cs~eel~~-~R~~-~-~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
||+.+|..+++|+ |.+.+.+...+|+++|++|.| .|...+..- .++- . ..|+....+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 9999998878888 999999999999999999987 565543211 1000 0 011111111110 00
Q ss_pred ccccCCceEEEEEecC-------------C--CC-----------CCCCCceEEEEEecCCCCCCCCcceecc---cccc
Q 007060 228 GRIEEGKATLRMKQDM-------------Q--ND-----------NFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDY 278 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~-------------~--~~-----------n~~~~D~V~~R~~~~~h~~~g~~w~i~P---TY~f 278 (619)
...+.+|++. . .+ ...++|+.+-|.... .-||. ..| ++++
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG~---~iP~~~~~~i 227 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWGI---PVPFDPEHTI 227 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSSE---EETTEEEEEE
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCce---ecCCCCCceE
Confidence 0111122110 0 00 013578888883110 01231 123 3332
Q ss_pred ----------cceeee---CCCCcceeeccccccc-chHHHHHHHHHhCCCCCc-EEeccccCCCCcccccccccccccc
Q 007060 279 ----------AHCIVD---SIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTN 343 (619)
Q Consensus 279 ----------a~~VdD---~l~gITHviRg~E~~~-~~~~q~~l~~aLg~~~P~-~~ef~rLn~~g~kLSKRk~~~lV~~ 343 (619)
.+++.| ....+++.+.|.|++. +......++.++|+..|. .+++|++..+|+|||||+|+
T Consensus 228 ~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN----- 302 (497)
T 2csx_A 228 YVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN----- 302 (497)
T ss_dssp CSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC-----
T ss_pred EEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC-----
Confidence 333433 2236777788999875 111111234577987777 55678988899999999998
Q ss_pred CccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 344 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 344 g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
..++..+.+ +|.++|+|.|+++.+-...+..++++.+.+..+.
T Consensus 303 ----------~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 303 ----------VVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp ----------CCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred ----------CCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 467888887 4999999999998776666667888888776543
No 19
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.79 E-value=6e-19 Score=194.44 Aligned_cols=274 Identities=16% Similarity=0.086 Sum_probs=171.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------chhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~wL 158 (619)
+++--+|+|||+|||||||++++.+.+|| ...|.-++++.++| |.....++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55666789999999999999999999999 46999999999998 5556678999999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccCC-----C-------CHHHHHHhhcccCCCCCCCCChHHH------
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVDH-----Q-------TPEEIKEYREKKMNSPWRDRPIAES------ 218 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c~-----c-------s~eel~~~R~~~~~~~~R~~s~ee~------ 218 (619)
|+.+|..+++|+ |.+.+.+..++|+++|.+|.+. | +.+++. .+ .|+....+++..
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~----~g-~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV----EG-LCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB----TT-BCTTTCSBCEEEEEEEEE
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc----CC-cCCCCCCeeeEEecCceE
Confidence 999998777888 8888999999999999999862 2 221110 00 011111111100
Q ss_pred --HHHHHHHhcccccCC-ceEEE--EEecC-CCCCCCCCceEEEEEecCCCCCCCCcceecc------------------
Q 007060 219 --LKLFEDMRNGRIEEG-KATLR--MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP------------------ 274 (619)
Q Consensus 219 --l~~fe~M~~G~~~~g-~~~lR--~K~d~-~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~P------------------ 274 (619)
+..|.+.....++++ ..+.- .+..+ ..-...++|+.+-|.... ..||.+ .|
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG~p---iP~~~~~v~~vWfds~~~y~ 235 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWGIP---LPWDENHVTFVWFDALLNYV 235 (500)
T ss_dssp ECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSSCE---ETTEEEEEECHHHHHHTHHH
T ss_pred EEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCccc---cCCCCCCeeEEccccchhhH
Confidence 000000000000000 00000 00000 000023578888883100 013321 12
Q ss_pred ---cccccceeeeCCCCcceeecccccccc-hHHHHHHHHHhCCCCCc-EEeccccCC-CCccccccccccccccCccCC
Q 007060 275 ---SYDYAHCIVDSIENITHSLCTLEFETR-RASYFWLLHALGLYQPY-VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDG 348 (619)
Q Consensus 275 ---TY~fa~~VdD~l~gITHviRg~E~~~~-~~~q~~l~~aLg~~~P~-~~ef~rLn~-~g~kLSKRk~~~lV~~g~v~g 348 (619)
.|+..|..++. .+.+.-+-|.|++.- ..-...++.++|+..|. .+++|++.. +|+|||||+|+
T Consensus 236 ~~~g~~~~~~~~~~-~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN---------- 304 (500)
T 2d5b_A 236 SALDYPEGEAYRTF-WPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN---------- 304 (500)
T ss_dssp HTTTTTTCHHHHHH-GGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC----------
T ss_pred HHcCCCCCchHHHc-CCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC----------
Confidence 24333222222 245566678888751 11111344577987777 456789888 99999999998
Q ss_pred CCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 349 WDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 349 WDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
..++..+.++ |.++|+|.|+++.+-...+..++++.+.+....
T Consensus 305 -----~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~ 347 (500)
T 2d5b_A 305 -----VVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYEA 347 (500)
T ss_dssp -----CCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHH
T ss_pred -----CCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHH
Confidence 4678888874 999999999998665556667888888776543
No 20
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.70 E-value=4.5e-17 Score=183.77 Aligned_cols=297 Identities=15% Similarity=0.083 Sum_probs=188.5
Q ss_pred CCCcceeecCcHHHHHHHhhhc--C----CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEeeecCC
Q 007060 72 SDGSVLICCNTKEVLDKHLEVT--G----GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTN 139 (619)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~--~----g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDTD 139 (619)
.+|++...-+...+...-+... . |+|++=| .|+|||+|||||+|++++.+.+|| .+.| .++-.|.|.+
T Consensus 74 ~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G 153 (592)
T 1iq0_A 74 VGGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTG 153 (592)
T ss_dssp ETTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTS
T ss_pred cCCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcc
Confidence 3577666655554555444431 1 2677777 899999999999999999999999 3445 4444456653
Q ss_pred ------------------c----------------------------------------hhchHHHHHHHHHHHHHcCCC
Q 007060 140 ------------------P----------------------------------------EAEKKEYIDHIEEIVQWMGWE 161 (619)
Q Consensus 140 ------------------p----------------------------------------~re~~e~~~~I~edL~wLGi~ 161 (619)
+ ......+.+.|.++++|||+.
T Consensus 154 ~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~ 233 (592)
T 1iq0_A 154 RQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNAR 233 (592)
T ss_dssp HHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCE
Confidence 0 112345677899999999999
Q ss_pred CCCcCCCchh--HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCC-CCCCChHHHHHHHHHHhccccc-CCceEE
Q 007060 162 PFKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-WRDRPIAESLKLFEDMRNGRIE-EGKATL 237 (619)
Q Consensus 162 pd~~~~qSd~--~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~-~R~~s~ee~l~~fe~M~~G~~~-~g~~~l 237 (619)
+|.....|++ .+.+.+.+++|.++|.+|.|.-. .+++. |-..+. -|... .|..++
T Consensus 234 ~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g----------~~~G~~~~~~~~-----------~g~~~~l~~~vi 292 (592)
T 1iq0_A 234 YDLLVWESDIVRAGLLQKALALLEQSPHVFRPREG----------KYAGALVMDASP-----------VIPGLEDPFFVL 292 (592)
T ss_dssp CSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS----------TTTTCEEEECTT-----------TSCSCSCCEEEE
T ss_pred eEEeccCCcccccchHHHHHHHHHHCCCcccCccc----------CcCCCEEEechh-----------cCCCCCCCceEE
Confidence 9987788887 56778889999999999987211 11111 111110 01100 011233
Q ss_pred EEEecCCCCCCCCCce--EEE--------EEecCCCCCCCCcceecccccccceeeeCCCCccee--ecccccccchHHH
Q 007060 238 RMKQDMQNDNFNMYDL--IAY--------RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASY 305 (619)
Q Consensus 238 R~K~d~~~~n~~~~D~--V~~--------R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHv--iRg~E~~~~~~~q 305 (619)
+ |.| .......+|+ ++| |...- +.++| +.|.|+.- |+.-...+.+|+ |.|.+|..+.+++
T Consensus 293 ~-ksd-G~~~Y~~~D~a~~~~Kl~l~~~~~~~~~----~~~p~-~r~~w~~~-g~~~~~~~~~~~iyV~g~~h~~~~~~~ 364 (592)
T 1iq0_A 293 L-RSN-GTATYYAKDIAFQFWKMGILEGLRFRPY----ENPYY-PGLRTSAP-EGEAYTPKAEETINVVDVRQSHPQALV 364 (592)
T ss_dssp E-CTT-SCBCHHHHHHHHHHHHTTSSCCCEEEEC----CCSSC-TTCEEEEE-EEEECCCCCSEEEEEEESSSCCCHHHH
T ss_pred E-ecC-CceEEecchHHHHHHHhhhhhhhhhhhh----hcCcc-hhhccccc-CcccCCCCCCEEEEEEeccHHHHHHHH
Confidence 2 322 1112223454 445 43211 12233 26777744 444444577887 6899999999999
Q ss_pred HHHHHHhCCCC-CcEE-ec--cccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccC
Q 007060 306 FWLLHALGLYQ-PYVW-EY--SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 381 (619)
Q Consensus 306 ~~l~~aLg~~~-P~~~-ef--~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~ 381 (619)
..++++||+.. +..| |+ +.++.+|.|||||+|+ +.++.+|+++|+ +++++++...+..-
T Consensus 365 ~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn---------------~v~l~dll~~~~--~~~~~~~~~~~~~~ 427 (592)
T 1iq0_A 365 RAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGL---------------AVSVDEVLEEAT--RRARAIVEEKNPDH 427 (592)
T ss_dssp HHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC-------------------CCBHHHHHHHHH--HHHHHHHHHHCTTC
T ss_pred HHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCC---------------ccCHHHHHHHHH--HHHHHHHHhhCCCC
Confidence 99999999854 2234 44 5588999999999998 468999999987 77888888776543
Q ss_pred CCcchhHhHHH-----HHHHHHhhcCCCceeeEecceeEEEE
Q 007060 382 SDSLIRLDRLE-----YHIREELNKTAPRTMVVLNPLKVVIT 418 (619)
Q Consensus 382 ~~~~~~~~~Le-----~~~r~~~~~~~~R~~av~dp~kl~i~ 418 (619)
++. +.+. ..+|-|+....++....||..++...
T Consensus 428 ~~~----e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~ 465 (592)
T 1iq0_A 428 PDK----EEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSF 465 (592)
T ss_dssp SCH----HHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCS
T ss_pred CcH----HHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHH
Confidence 322 1222 36788888888888888888776443
No 21
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-16 Score=170.81 Aligned_cols=193 Identities=14% Similarity=0.080 Sum_probs=133.4
Q ss_pred cHHHHHHHhhhcCC--eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CCchhch--------HHH
Q 007060 82 TKEVLDKHLEVTGG--NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPEAEK--------KEY 147 (619)
Q Consensus 82 ~~~~~~~~~~~~~g--~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TDp~re~--------~e~ 147 (619)
+++.|++.|+..+. .|.++|.| ||.|||||+..|+.+|.+++ .|+.++++|.| |+..+.. ..+
T Consensus 25 ~~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~ 101 (394)
T 2dlc_X 25 NPQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYY 101 (394)
T ss_dssp CHHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHH
Confidence 36778888876333 68999988 79999999999999999998 89999999999 7522211 124
Q ss_pred HHHHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHH
Q 007060 148 IDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 225 (619)
Q Consensus 148 ~~~I~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M 225 (619)
...|..+|.|+|++|++ +.+||+++. .-+++..++ .|.|+||..++..... + +
T Consensus 102 ~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-------------~-------~ 156 (394)
T 2dlc_X 102 ELTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-------------D-------V 156 (394)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-------------T-------T
T ss_pred HHHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-------------h-------h
Confidence 56778889999999986 789999863 223444444 7899999998874310 0 0
Q ss_pred hcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHH
Q 007060 226 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 305 (619)
Q Consensus 226 ~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q 305 (619)
. |.+ .+. + .+.-+|..--+.|..+++++|+++|.|+..|...+
T Consensus 157 ----~-------r~~-----~~~---------------~------~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~ 199 (394)
T 2dlc_X 157 ----V-------KQV-----ANP---------------L------LSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLA 199 (394)
T ss_dssp ----S-------CCC-----SSC---------------C------THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred ----h-------ccc-----CCc---------------c------ceeeechhHhhccHhhhCCCEEecCccHHHHHHHH
Confidence 0 000 000 0 01233434444566679999999999999999999
Q ss_pred HHHHHHhCCCCCcEEecccc-CCC-Ccccccccccc
Q 007060 306 FWLLHALGLYQPYVWEYSRL-NVS-NTVMSKRKLNF 339 (619)
Q Consensus 306 ~~l~~aLg~~~P~~~ef~rL-n~~-g~kLSKRk~~~ 339 (619)
..++..+|+..|...+.+.| +++ |+|||||.++.
T Consensus 200 rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns 235 (394)
T 2dlc_X 200 EENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNS 235 (394)
T ss_dssp HHHGGGGTCCCCEEEEECCCCCCC----------CC
T ss_pred HHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCC
Confidence 99999999988987777764 778 99999998763
No 22
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.65 E-value=5.9e-15 Score=165.19 Aligned_cols=286 Identities=13% Similarity=0.043 Sum_probs=164.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEeeecCC-------------chhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~---~iLRidDTD-------------p~re~~e~~~~I~edL~wL 158 (619)
++|--+|.|||+|||||+|++++.+.+|| ...|. |+.-+||.+ |.....++.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 67788899999999999999999999999 44564 444455332 4455678999999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCcc-------cCCCCHHHHHHh--hc----------ccCCC-CCCC-CCh
Q 007060 159 GWEPFKITYTS--DYFQELYELAVELIRRGHAY-------VDHQTPEEIKEY--RE----------KKMNS-PWRD-RPI 215 (619)
Q Consensus 159 Gi~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY-------~c~cs~eel~~~--R~----------~~~~~-~~R~-~s~ 215 (619)
|+.+|..+.++ .|.+...+...+|.++|.+| .|.....-+.+. .+ .+..| .|.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99999765555 56566677889999999999 222111000000 00 00000 0110 000
Q ss_pred HHHHHHHHHHhcccccC--CceEEEEEecC----------------CCC-------CCCCCceEEEEEecC-CCCCCCCc
Q 007060 216 AESLKLFEDMRNGRIEE--GKATLRMKQDM----------------QND-------NFNMYDLIAYRIKFT-PHPHAGDK 269 (619)
Q Consensus 216 ee~l~~fe~M~~G~~~~--g~~~lR~K~d~----------------~~~-------n~~~~D~V~~R~~~~-~h~~~g~~ 269 (619)
.+... -.-.+.|...+ .+-.+.++++. ... ...+.|+.+=|-..- +++.-+++
T Consensus 181 ~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~ 259 (560)
T 3h99_A 181 TELIE-PKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP 259 (560)
T ss_dssp GGCEE-EEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT
T ss_pred hhhcC-CccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC
Confidence 00000 00000000000 00111111110 000 013578888886422 23221111
Q ss_pred ceeccccc-----cccee------------------eeCCCCcceeeccccccc-chHHHHHHHHHhCCCCCc-EEeccc
Q 007060 270 WCIYPSYD-----YAHCI------------------VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSR 324 (619)
Q Consensus 270 w~i~PTY~-----fa~~V------------------dD~l~gITHviRg~E~~~-~~~~q~~l~~aLg~~~P~-~~ef~r 324 (619)
=..+.+|. |..++ .|....+.|++ |.|++. +...+..++.++|+..|. .+-+++
T Consensus 260 ~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~ 338 (560)
T 3h99_A 260 GKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGY 338 (560)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEECC
T ss_pred CceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEeE
Confidence 00000110 00001 23344456776 999886 333334577889987775 344788
Q ss_pred cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccC-CCcchhHhHHHH-HHHHHhh
Q 007060 325 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLDRLEY-HIREELN 400 (619)
Q Consensus 325 Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~-~~~~~~~~~Le~-~~r~~~~ 400 (619)
++.+|.|||||+|+ ..++..+.++ |.++|+|-|++..+... .+..++++.+.+ .++.+.+
T Consensus 339 v~~~G~KMSKS~GN---------------vv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 339 VTVNGAKMSKSRGT---------------FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp EEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred EEeCCeeccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 88899999999998 4688899887 99999999999876644 566788887654 4444443
No 23
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.61 E-value=4.7e-15 Score=165.16 Aligned_cols=278 Identities=15% Similarity=0.114 Sum_probs=147.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCC-------------chhchHHHHHHHHHHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTN-------------PEAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTD-------------p~re~~e~~~~I~edL~w 157 (619)
-++|.-.|.|||+|||||+|++++.+.+||. ++..++..+||.+ |.....++.+.|.+++++
T Consensus 27 ~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 106 (536)
T 4dlp_A 27 YYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEV 106 (536)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3788889999999999999999999999993 4456778888865 334467899999999999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHHHH-Hhhc--c---cCC-CCCCCCC---------
Q 007060 158 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIK-EYRE--K---KMN-SPWRDRP--------- 214 (619)
Q Consensus 158 LGi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c-----~cs~eel~-~~R~--~---~~~-~~~R~~s--------- 214 (619)
||+.+|..+++++ |.+.+.+..++|+++|.+|.+ +|...+.. ..+. . +.- +.|....
T Consensus 107 lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f 186 (536)
T 4dlp_A 107 LNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYF 186 (536)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEE
T ss_pred cCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceE
Confidence 9999997666665 888899999999999999965 34322100 0000 0 000 1111100
Q ss_pred -----hHHHHHHHHHHhcccccCCceEE--EEEecC-CCCCCCCCceEEEEEec-CCCCCCCCcceeccccc------cc
Q 007060 215 -----IAESLKLFEDMRNGRIEEGKATL--RMKQDM-QNDNFNMYDLIAYRIKF-TPHPHAGDKWCIYPSYD------YA 279 (619)
Q Consensus 215 -----~ee~l~~fe~M~~G~~~~g~~~l--R~K~d~-~~~n~~~~D~V~~R~~~-~~h~~~g~~w~i~PTY~------fa 279 (619)
..+.+ .+....+. .... +.+..+ ..-...++|+.+=|... =++|.-+++=.+..+|- ++
T Consensus 187 ~~l~~~~~~l--~~~~~~~~----~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s 260 (536)
T 4dlp_A 187 FRLSAYQDKL--LDLYENNP----GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYIT 260 (536)
T ss_dssp ECGGGGHHHH--HHHHHHCT----TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHH
T ss_pred EecHHHHHHH--HHHHHhCC----CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHH
Confidence 00100 01111110 0000 000000 00001346777777421 12222221111111110 00
Q ss_pred ce-----eeeC--CCCcceeecccccccc-hHHHHHHHHHhCCCCCc-EEeccccCCCCccccccccccccccCccCCCC
Q 007060 280 HC-----IVDS--IENITHSLCTLEFETR-RASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWD 350 (619)
Q Consensus 280 ~~-----VdD~--l~gITHviRg~E~~~~-~~~q~~l~~aLg~~~P~-~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWD 350 (619)
+. -.+. .-..+--+-|.|++.. ...+-.++.++|+..|. .+.+++++.+|+|||||+|+
T Consensus 261 ~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GN------------ 328 (536)
T 4dlp_A 261 ALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGN------------ 328 (536)
T ss_dssp TTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC-----------------------
T ss_pred hcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCC------------
Confidence 00 0000 0001122347777642 22233455678886665 33457888899999999998
Q ss_pred CcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHH
Q 007060 351 DPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 395 (619)
Q Consensus 351 DPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~ 395 (619)
..++..+.+. |.++|+|-|+++.+-...+..++++.+.+.+
T Consensus 329 ---vi~p~d~i~~-~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 369 (536)
T 4dlp_A 329 ---VIDPFELVER-YGLDQLRYFLMREVPFGQDGSYSHEAIVNRT 369 (536)
T ss_dssp ----CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred ---CCCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 4677787765 8899999999986544556678887776543
No 24
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.61 E-value=5.5e-15 Score=163.91 Aligned_cols=282 Identities=17% Similarity=0.157 Sum_probs=163.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------chhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~wL 158 (619)
.+|=-.|+|||.|||||||++++.+.+|| .+.|.-++++.++| |.....++.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45666799999999999999999999999 46899899999988 3333467999999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHH-HHHhhc--c---cCCCCCCC-CChHHH------
Q 007060 159 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEE-IKEYRE--K---KMNSPWRD-RPIAES------ 218 (619)
Q Consensus 159 Gi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~c-----~cs~ee-l~~~R~--~---~~~~~~R~-~s~ee~------ 218 (619)
|+.+|..+++|+ |.+.+.+..++|.++|.+|.. +|...+ .-..++ . +..|+.|. .+++..
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999998778888 999999999999999999843 343221 000000 0 01122121 121100
Q ss_pred --HHHHHHHhcccccCCceEEE---EEecC-CCCCCCCCceEEEEEec-CCCCCCCC-c-----c----------eeccc
Q 007060 219 --LKLFEDMRNGRIEEGKATLR---MKQDM-QNDNFNMYDLIAYRIKF-TPHPHAGD-K-----W----------CIYPS 275 (619)
Q Consensus 219 --l~~fe~M~~G~~~~g~~~lR---~K~d~-~~~n~~~~D~V~~R~~~-~~h~~~g~-~-----w----------~i~PT 275 (619)
+..|.+.....++++...+. .|-.+ ..-...++|+.+-|... =++|.-++ . | .+||.
T Consensus 175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~ 254 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPD 254 (524)
T ss_dssp ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTC
T ss_pred eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCC
Confidence 00010000000000100000 00000 00012357888877421 01111111 0 2 01121
Q ss_pred ccccce-eeeCCCCcceeeccccccc-chHHHHHHHHHhCCCCC-cEEeccccCCCCccccccccccccccCccCCCCCc
Q 007060 276 YDYAHC-IVDSIENITHSLCTLEFET-RRASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDP 352 (619)
Q Consensus 276 Y~fa~~-VdD~l~gITHviRg~E~~~-~~~~q~~l~~aLg~~~P-~~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDP 352 (619)
.|. --.....++.-+-|.|+.- +......++.++|+..| .+|.+|++..+|.|||||+|+
T Consensus 255 ---~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN-------------- 317 (524)
T 2x1l_A 255 ---TESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN-------------- 317 (524)
T ss_dssp ---TTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE--------------
T ss_pred ---CchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC--------------
Confidence 000 0000011222233555441 11111123456688766 578889998899999999998
Q ss_pred ccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHHH
Q 007060 353 CLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 397 (619)
Q Consensus 353 R~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 397 (619)
..++..+.++ |.++|+|-|+++.+-...+..++++.+.+....
T Consensus 318 -~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 318 -VVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp -SSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred -CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 4688888876 999999999998665556667888888766543
No 25
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.54 E-value=4.2e-14 Score=155.20 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=158.8
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-hhchHHHHHHHHHH-HH-HcCCCC--CCc
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEI-VQ-WMGWEP--FKI 165 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~re~~e~~~~I~ed-L~-wLGi~p--d~~ 165 (619)
+.+|++=| +|+|||+|||||+|++++.+.+|| ...|.=++|.-=+|. .+...-...++... .+ ++|... .+-
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 45799999 899999999999999999999999 456877888777764 44554445554332 45 556552 233
Q ss_pred CCCchhHHHHHHHHHHHHHc-CCcccCCCCHHHHHH---------hhc--c----cCC------CCCCCCChHHHHHHHH
Q 007060 166 TYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIKE---------YRE--K----KMN------SPWRDRPIAESLKLFE 223 (619)
Q Consensus 166 ~~qSd~~~~~ye~A~~LI~~-G~AY~c~cs~eel~~---------~R~--~----~~~------~~~R~~s~ee~l~~fe 223 (619)
.|+.+| +.+.|+++.++ +..+...-..+.+.+ ++. . .++ +-+. .+++.++.++
T Consensus 109 ~y~g~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~--~~~~vv~~L~ 183 (464)
T 3fnr_A 109 YYKGEY---IVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD--ALNATLESLK 183 (464)
T ss_dssp CCCSHH---HHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST--THHHHHHHHH
T ss_pred hcCccH---HHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH--HHHHHHHHHH
Confidence 466666 45667777766 555533111111211 111 0 111 2222 4555444333
Q ss_pred HHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccccc---ccceeeeCCCCcceee--ccccc
Q 007060 224 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHSL--CTLEF 298 (619)
Q Consensus 224 ~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~---fa~~VdD~l~gITHvi--Rg~E~ 298 (619)
+ .|...+.+-++.++.+- .+. -.|.|+-|. +| .|||. +|..+++..++++++| .|.||
T Consensus 184 ~--~g~~~e~dGa~~~~~~~-~g~--~~~~vl~ks-------DG-----~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq 246 (464)
T 3fnr_A 184 E--HKGIYEQEGKIWLASSQ-KGD--EKDRVIIRE-------DG-----RGTYLAADIVYHKDKMSRGYGKCINIWGADH 246 (464)
T ss_dssp H--TTCEEEETTEEEECGGG-GTC--SSCEEEECT-------TS-----CBCHHHHHHHHHHHHHTSSCSEEEEEEEGGG
T ss_pred H--CCCEEEeCCeEEEEecc-cCC--CCceEEEeC-------CC-----ceehhhHHHHHHHHHHHcCCCeEEEEecCcH
Confidence 2 35543333334455431 222 147888776 55 57776 7888999999999985 89999
Q ss_pred ccchHHHHHHHHHhCCCCCcEE--eccccCC--CCc--cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 007060 299 ETRRASYFWLLHALGLYQPYVW--EYSRLNV--SNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 372 (619)
Q Consensus 299 ~~~~~~q~~l~~aLg~~~P~~~--ef~rLn~--~g~--kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~ 372 (619)
..+.+++..+++++|+..+..- .|+.+++ +|+ |||||+|+ ..++..+.+. +.++|++-
T Consensus 247 ~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn---------------~v~l~dll~~-~g~dalRy 310 (464)
T 3fnr_A 247 HGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN---------------FILMSDVVDE-IGSDALRY 310 (464)
T ss_dssp GGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS---------------SCBHHHHHHH-HCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC---------------CCCHHHHHhh-ccHHHHHH
Confidence 9999999999999998765432 2455544 775 99999998 4688888876 77899998
Q ss_pred HHHHcC
Q 007060 373 FVQGIG 378 (619)
Q Consensus 373 fl~~lG 378 (619)
|+++..
T Consensus 311 ~~l~~~ 316 (464)
T 3fnr_A 311 IFLSKK 316 (464)
T ss_dssp HTTSSC
T ss_pred HHHhcC
Confidence 887654
No 26
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.44 E-value=1.1e-13 Score=156.52 Aligned_cols=250 Identities=13% Similarity=0.127 Sum_probs=167.5
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEe---eec-------------------------CC---
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLR---YDD-------------------------TN--- 139 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLR---idD-------------------------TD--- 139 (619)
+++|++=| +|+|+|+|||||+|++++.+.+|| .+-|.=+.| +.| ++
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 45799999 999999999999999999999999 345544444 444 11
Q ss_pred --------------------c-----hh-------------------chHHHHHHHHHHHHHcCCCCCCcCCCchhH-HH
Q 007060 140 --------------------P-----EA-------------------EKKEYIDHIEEIVQWMGWEPFKITYTSDYF-QE 174 (619)
Q Consensus 140 --------------------p-----~r-------------------e~~e~~~~I~edL~wLGi~pd~~~~qSd~~-~~ 174 (619)
+ .+ -...+.+.+.++++.||+..|.....|+|. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 0 11 134567788999999999998777888887 67
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceE
Q 007060 175 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 254 (619)
Q Consensus 175 ~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V 254 (619)
+.+..+.|.++|.+|... |..++ .++- .+. ...+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d----------------------------------------Ga~~~--~~~~-~g~-~~d~~v 337 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK----------------------------------------GAVLI--DLTK-FNK-KLGKAI 337 (607)
T ss_dssp HHHHHHHHHHTTCEEEET----------------------------------------TEEEE--EGGG-TCT-TTCEEE
T ss_pred HHHHHHHHHhCCCEEEEC----------------------------------------CcEEE--Eecc-cCC-CCCcee
Confidence 778889999999999521 11111 1110 110 112345
Q ss_pred EEEEecCCCCCCCCcceecccccccceeeeC-CCCcceee--cccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCc
Q 007060 255 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT 330 (619)
Q Consensus 255 ~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~-l~gITHvi--Rg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~ 330 (619)
+.|. +|.. .|-|=|+|..+..+ .++.+++| .|.+|..+-++...+.++||+..+..|.|..+ .+.
T Consensus 338 ~~Ks-------DG~~--~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~-- 406 (607)
T 1f7u_A 338 VQKS-------DGTT--LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ-- 406 (607)
T ss_dssp EECT-------TSCC--CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE--
T ss_pred Eecc-------CCCc--CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc--
Confidence 5443 4421 13333456666554 35888888 89999999999888999999976766776433 222
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCC---cchhHhHHH-----HHHHHHhhcC
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD---SLIRLDRLE-----YHIREELNKT 402 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~---~~~~~~~Le-----~~~r~~~~~~ 402 (619)
+||||+|+ +.||++|.+.... .| .+ +.. +.++ ..-+.+.+. .++|-++...
T Consensus 407 kMSkR~G~---------------~v~L~dLlde~~~-~a-~~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~ 465 (607)
T 1f7u_A 407 GMSTRKGT---------------VVFLDNILEETKE-KM-HE-VMK---KNENKYAQIEHPEEVADLVGISAVMIQDMQG 465 (607)
T ss_dssp SCCGGGTC---------------CCBHHHHHHHHHH-HH-HH-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS
T ss_pred cccCCCCC---------------cccHHHHHHHHHH-HH-HH-HHH---hCcccccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 69999998 5799999987544 45 22 222 1110 011233343 3788999999
Q ss_pred CCceeeEecceeEEEEe
Q 007060 403 APRTMVVLNPLKVVITN 419 (619)
Q Consensus 403 ~~R~~av~dp~kl~i~n 419 (619)
.+|...+||..++...+
T Consensus 466 ~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 466 KRINNYEFKWERMLSFE 482 (607)
T ss_dssp CTTCCEECCHHHHHCCS
T ss_pred CCCCCcccCHHHHHHHh
Confidence 99999999988775554
No 27
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.43 E-value=2.9e-13 Score=142.08 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=160.9
Q ss_pred HHHHHHHhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-------CCchhchHHHHHHHHHH
Q 007060 83 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEI 154 (619)
Q Consensus 83 ~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-------TDp~re~~e~~~~I~ed 154 (619)
++.|++.|+. ..-.|.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| +....+..++...|.++
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 5677788864 3346778886 6699999998 6788999999989999999966 32334677888999999
Q ss_pred HHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccC
Q 007060 155 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 232 (619)
Q Consensus 155 L~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~ 232 (619)
+.++|++|++ +.+||++... -++++ ....|.|.||..+|..... +- |+.
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~--~~--------------------~~~-- 147 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSMD--EV--------------------SRR-- 147 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTT--TT--------------------CSC--
T ss_pred HHHhCCCccceEEEEcchhccc-hHHHH----HHHHHhCccCHHHHhccch--hh--------------------ccc--
Confidence 9999999986 6899998632 12222 2234789999998865311 00 000
Q ss_pred CceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHh
Q 007060 233 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 312 (619)
Q Consensus 233 g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aL 312 (619)
. ++ + -.+.-+|-+..+.|+.+.+++|+++|.|...+...+..|...+
T Consensus 148 ----------~--~~-------------------~--~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~ 194 (323)
T 2cyb_A 148 ----------K--ED-------------------P--MVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRL 194 (323)
T ss_dssp ----------S--SS-------------------C--BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGG
T ss_pred ----------c--CC-------------------C--CchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhc
Confidence 0 00 0 0124567777778888889999999999999999999999999
Q ss_pred CCCCCcEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHH
Q 007060 313 GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 391 (619)
Q Consensus 313 g~~~P~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~L 391 (619)
|...|...+.+.| +++|+|||||.++. +.=.| +|++|+..+... +|.+. .++...+
T Consensus 195 ~~~~p~~l~~pll~~l~G~KMSKS~~n~------I~l~d---------------~p~~i~~Ki~~a-~td~~-~~~~~~~ 251 (323)
T 2cyb_A 195 GYSSPVCLHTPILVGLDGQKMSSSKGNY------ISVRD---------------PPEEVERKIRKA-YCPAG-VVEENPI 251 (323)
T ss_dssp TCCCCEEEEECCCBCTTSSBCCTTTTCS------CBTTC---------------CHHHHHHHHHTS-CCCTT-CCTTCHH
T ss_pred CCCCceEEecCcccCCCCCcccCCcCce------eCCCC---------------CHHHHHHHHHhc-CCCCC-CCCcChH
Confidence 9988887777775 78999999996542 21112 377888877763 23222 1233344
Q ss_pred HHHHHHHhhc
Q 007060 392 EYHIREELNK 401 (619)
Q Consensus 392 e~~~r~~~~~ 401 (619)
.+..+.++.+
T Consensus 252 ~~~~~~~~~p 261 (323)
T 2cyb_A 252 LDIAKYHILP 261 (323)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHhcc
Confidence 5555555544
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.43 E-value=5.9e-13 Score=142.41 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=129.9
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CC-ch------hchHHHHHH
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE------AEKKEYIDH 150 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TD-p~------re~~e~~~~ 150 (619)
+.+.|++.|+...-.|.++|. |||.|||||...++.++.+.+ .|+.+++.|.| |+ |. +....+.+.
T Consensus 23 ~~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 23 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN 99 (372)
T ss_dssp CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHH
Confidence 356688888764457899999 579999999999999999987 79999999999 75 42 234455665
Q ss_pred -HHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhc
Q 007060 151 -IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 151 -I~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
|...+.|+|++|++ +++||++. ..-+++..++. |.|+||..+++... . + + .
T Consensus 100 ~i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~-----~--------~-------v-~ 153 (372)
T 1n3l_A 100 VIKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAG-----A--------E-------V-V 153 (372)
T ss_dssp HHHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHT-----T--------T-------T-S
T ss_pred HHHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhch-----h--------h-------h-h
Confidence 55567999999985 78999983 12245555554 88999998876520 0 0 0 0
Q ss_pred ccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHH
Q 007060 228 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 307 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~ 307 (619)
|.+ . +.. -| --.||.-. +.|-.+.+.+|+++|.|...+.....-
T Consensus 154 ----------~~~------~----~~~-----------~g--~~~YP~lQ---aaDil~~~a~~v~~G~DQ~~~~~l~rd 197 (372)
T 1n3l_A 154 ----------KQV------E----HPL-----------LS--GLLYPGLQ---ALDEEYLKVDAQFGGIDQRKIFTFAEK 197 (372)
T ss_dssp ----------CCC------S----SCC-----------HH--HHHHHHHH---HHHHHHTTCSEEEEEGGGHHHHHHHHH
T ss_pred ----------ccc------C----CCc-----------ce--eeecchHh---hccHHHhcCCEEEcChhHHHHHHHHHH
Confidence 000 0 000 00 01244432 223334688999999999999999999
Q ss_pred HHHHhCCCCCcEEecccc-CCCCccccccccc
Q 007060 308 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 308 l~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
|+..+|+..|...+.+.| +++|+|||||.++
T Consensus 198 l~~r~~~~~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 198 YLPALGYSKRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp HGGGGTCCCCEEEEECCCCCSSCC-------C
T ss_pred HHHHcCCCCCEEEecCccCCCCcccccCCCCC
Confidence 999999988887776664 7889999999876
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.41 E-value=3.6e-13 Score=152.95 Aligned_cols=250 Identities=17% Similarity=0.123 Sum_probs=150.3
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEE---eeecC-----------------------------
Q 007060 94 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYL---RYDDT----------------------------- 138 (619)
Q Consensus 94 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iL---RidDT----------------------------- 138 (619)
+++|++=| +|+|||+|||||+|++++.+.+|| .+-|.=+. -|+|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 35788888 999999999999999999999999 34454444 45554
Q ss_pred ---Cch----------------------------------------hchHHHHHHHHHHHHHcCCCCCCcCCCchh--HH
Q 007060 139 ---NPE----------------------------------------AEKKEYIDHIEEIVQWMGWEPFKITYTSDY--FQ 173 (619)
Q Consensus 139 ---Dp~----------------------------------------re~~e~~~~I~edL~wLGi~pd~~~~qSd~--~~ 173 (619)
||. .-...+.+.+.++++.||+..|.....|++ .+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~ 277 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRK 277 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTT
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccch
Confidence 111 113456778889999999999888788888 55
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCC-CCCCChHHHHHHHHHHhcccc-cCCceEEEEEecCCCCCCCCC
Q 007060 174 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-WRDRPIAESLKLFEDMRNGRI-EEGKATLRMKQDMQNDNFNMY 251 (619)
Q Consensus 174 ~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~-~R~~s~ee~l~~fe~M~~G~~-~~g~~~lR~K~d~~~~n~~~~ 251 (619)
.+.+..++|.++|.+|.|.-. .+++. |=..+. | |.. ..|..+++ |.|- ......+
T Consensus 278 ~v~~vi~~L~~kG~~y~~~~g----------e~~Ga~~v~~~~------~-----g~~~~~~~~v~~-ksdG-~~~Y~~~ 334 (629)
T 2zue_A 278 LFEIALELLSKNENFYIPSDG----------KYRGAFVMDLRK------L-----FPDMKNPILVLR-RSDG-TATYTGK 334 (629)
T ss_dssp HHHHHHHHHHTSTTEECCSSS----------TTTTCEEEECTT------T-----CSSSSCCEEEEE-CTTS-CBCHHHH
T ss_pred hHHHHHHHHHHCCCccccccC----------CcCCcEEEECcc------c-----CCccccCceEEE-ecCC-ccccchh
Confidence 778889999999999965210 01110 100000 0 100 00112222 3220 1112234
Q ss_pred ce--EEE---------EEecCCC-CCCCCcc-eecccccccceeeeCCCCcceee--cccccccchHHHHHHHHHhCCCC
Q 007060 252 DL--IAY---------RIKFTPH-PHAGDKW-CIYPSYDYAHCIVDSIENITHSL--CTLEFETRRASYFWLLHALGLYQ 316 (619)
Q Consensus 252 D~--V~~---------R~~~~~h-~~~g~~w-~i~PTY~fa~~VdD~l~gITHvi--Rg~E~~~~~~~q~~l~~aLg~~~ 316 (619)
|+ ++| |...-.. ..+..+| .+.|. +..+..|+| .|.++..+-++-..+..+||+..
T Consensus 335 Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg---------~~~~~d~~IyV~g~~q~~~~~~l~~~l~~lG~~~ 405 (629)
T 2zue_A 335 DIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPN---------KFGNANIVINVIGAEQKHPQLAIKYALQLLGFED 405 (629)
T ss_dssp HHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTT---------SSCCCSEEEEEEEGGGHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHhhcccccccCCcccccccccCCCCCCCCC---------ccCCCCcEEEEEeCcHhhHHHHHHHHHHHcCCCC
Confidence 54 344 3321100 0011234 34554 122334433 46677766666666778889855
Q ss_pred -CcEEe---ccccCCCCcccccccc--ccccccCccCCCCCcccccHHHHHHcC--------------------------
Q 007060 317 -PYVWE---YSRLNVSNTVMSKRKL--NFLVTNKYVDGWDDPCLMTLAGLRRRG-------------------------- 364 (619)
Q Consensus 317 -P~~~e---f~rLn~~g~kLSKRk~--~~lV~~g~v~gWDDPR~~Tl~~lrrrG-------------------------- 364 (619)
+..|+ |+.++++|.|||||+| + +.++.+|.+.+
T Consensus 406 ~~~~~~h~~~g~V~~~~~KMSkr~G~~n---------------~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~ 470 (629)
T 2zue_A 406 AAANLYHLAYEHVERPEGKFSGRKGTWV---------------GFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470 (629)
T ss_dssp HHHTEEEEEECCEEBTTBCCCTTTTTTT---------------TCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEeeeEEcCCCcccCCCCCCC---------------eeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 43453 3678899999999999 7 46888888764
Q ss_pred CCHHHHHHHHHHcCccCCCcchhHhHH
Q 007060 365 VTSTSINAFVQGIGISRSDSLIRLDRL 391 (619)
Q Consensus 365 ~~peAI~~fl~~lG~s~~~~~~~~~~L 391 (619)
+-+.|++-|+++.... ++-.++++.+
T Consensus 471 vg~~AvRy~~L~~~~~-~~~~Fd~d~~ 496 (629)
T 2zue_A 471 VGIGAIRYNLIKYSPD-KKIIFRWEDV 496 (629)
T ss_dssp HHHHHHHHHHHSSCTT-SCEECCHHHH
T ss_pred cChhHhhHHHHhcCCC-CCCeecHHHH
Confidence 6678888888876543 3334555444
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.40 E-value=1.7e-12 Score=145.61 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=79.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCc-------------hhchHHHHHHHHHHHHH
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp-------------~re~~e~~~~I~edL~w 157 (619)
-++|--.|.|||+|||||+|++++.+.+|| .++..|+.-+||.+. ..-..++.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999999999999999 355567777777763 23356889999999999
Q ss_pred cCCCCCCcCCCc--hhHHHHHHHHHHHHHcCCcccC
Q 007060 158 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 191 (619)
Q Consensus 158 LGi~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~c 191 (619)
||+.+|..++++ .|.+.+.+..++|.++|.+|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999999765555 5778888999999999999863
No 31
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.31 E-value=1.4e-11 Score=136.89 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=74.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc----------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~wL 158 (619)
++|==.|.|||.||||||++.++-+.+|| ...|.-++-+.+||- ..-..+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666799999999999999999999999 356766677777773 122467899999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd~~~~qS--d~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+.+|..+.++ +|.....+...+|.++|.+|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99988654444 466666677889999999985
No 32
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.22 E-value=3.1e-11 Score=139.10 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=73.2
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHH--HcCCE---EEEeeecCC-------------chhchHHHHHHHHHHHHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAK--ERGGY---CYLRYDDTN-------------PEAEKKEYIDHIEEIVQW 157 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRa-al~n~~~Ar--~~~G~---~iLRidDTD-------------p~re~~e~~~~I~edL~w 157 (619)
++|==+|.|||.|||||+++ .++.+.+|| ...|. |+.-+|+.. |..-..+|.+.+.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999998 899999998 34554 444455543 222356789999999999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 158 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 158 LGi~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
||+.+|..+++++ |.....+...+|.++|.+|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999997666664 66667788899999999885
No 33
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.73 E-value=1.5e-08 Score=107.11 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=116.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----C----CchhchHHHHHHHHHHHHHcCCCCC--C
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T----NPEAEKKEYIDHIEEIVQWMGWEPF--K 164 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T----Dp~re~~e~~~~I~edL~wLGi~pd--~ 164 (619)
..|.+.|. |||.|||||...++.||...+..|..+++.|.| | ||+. ..+....+..++.++|++|+ .
T Consensus 13 ~~v~~G~~--PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 13 MRILSGMR--PTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CEEEEEEC--CCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CeEEEeeC--CCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE
Confidence 34555555 568999999998888998888889999999999 6 5654 56667777788889999998 4
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCC
Q 007060 165 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 244 (619)
Q Consensus 165 ~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~ 244 (619)
+..||++.+ +.+++. .+.|.++..+|...- .+ .+ . .-|++..
T Consensus 90 if~qS~~~~-~~el~~-------~l~~~~~v~~l~r~~--~~----------------k~----~------~~r~~~~-- 131 (340)
T 2g36_A 90 IFVQSGVKE-HAELAL-------LFSMIVSVSRLERVP--TY----------------KE----I------KSELNYK-- 131 (340)
T ss_dssp EEEGGGCTH-HHHHHH-------HHHTTSCHHHHHTCH--HH----------------HT----C---------------
T ss_pred EEECCchHH-HHHHHH-------HHHccCCHHHHHHhH--HH----------------Hh----H------HHHhccC--
Confidence 789999854 444433 346888888775321 00 00 0 0011100
Q ss_pred CCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCc
Q 007060 245 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPY 318 (619)
Q Consensus 245 ~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~ 318 (619)
.+.+ -| --.||.-.=| |=.+.+.++++.|.|...+.....-|...++ +..|.
T Consensus 132 -~~~~----------------~g--~f~YPvLQAa---Dil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~ 189 (340)
T 2g36_A 132 -DLST----------------AG--FLIYPVLQAA---DILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE 189 (340)
T ss_dssp -CCCS----------------HH--HHTHHHHHHH---HHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCE
T ss_pred -CCCC----------------hH--HhhhHHHHHh---hHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCch
Confidence 0000 00 0125543323 2234789999999999988887777777653 23454
Q ss_pred EE--eccc-cCCCCccccccccc
Q 007060 319 VW--EYSR-LNVSNTVMSKRKLN 338 (619)
Q Consensus 319 ~~--ef~r-Ln~~g~kLSKRk~~ 338 (619)
.. +.++ .+++|+|||||.++
T Consensus 190 ~~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 190 AILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp EEECCSCCCCCTTSSCCCGGGTC
T ss_pred hhhccccccCCCCccccCCCCCC
Confidence 22 2344 37789999999876
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.73 E-value=8e-08 Score=102.46 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=129.3
Q ss_pred cHHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CC-ch-h---chHHHHHHH
Q 007060 82 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE-A---EKKEYIDHI 151 (619)
Q Consensus 82 ~~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TD-p~-r---e~~e~~~~I 151 (619)
+++.|++.|+.. .-.|.+-|.| ||.||||| ..++.++...+..|..+++.|.| |+ |. + +..+....+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 466677888653 3468899977 59999999 88889999888889999999999 33 31 2 345666788
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhccc
Q 007060 152 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 229 (619)
Q Consensus 152 ~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~ 229 (619)
..++.++|++|++ +.+||+.... ..+...++ .+.|++|..+|.... .+ ..
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~--~~----k~----------------- 150 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRAL--TI----MG----------------- 150 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC---------------------------
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCc--hh----hh-----------------
Confidence 8899999999985 7889998643 23333333 346788888776321 00 00
Q ss_pred ccCCceEEEEEecCCCCC-CCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHH
Q 007060 230 IEEGKATLRMKQDMQNDN-FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 308 (619)
Q Consensus 230 ~~~g~~~lR~K~d~~~~n-~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l 308 (619)
|.. ..+ .+ .| .-.||...=| |=.+.+.+|++.|.|...+.....-+
T Consensus 151 --------r~~----~~~~i~----------------~g--~~~YP~LQaa---Dil~~~~~~v~~G~DQ~~~~~l~rdl 197 (364)
T 2cya_A 151 --------RRA----EEAEVD----------------AS--KLIYPLMQVS---DIFYMDLDIALGGMDQRKAHMLARDV 197 (364)
T ss_dssp ----------C----CGGGSC----------------TH--HHHHHHHHHH---HHHHTTCSEEEEEGGGHHHHHHHHHH
T ss_pred --------hhc----CCCCcc----------------ch--hhhhHHHHHh---hHHhcCCCEEeccchHHHHHHHHHHH
Confidence 000 000 00 00 0124443222 22246899999999999998888888
Q ss_pred HHHhCCCCCcEEecccc-CCC-----------------Ccccccccc
Q 007060 309 LHALGLYQPYVWEYSRL-NVS-----------------NTVMSKRKL 337 (619)
Q Consensus 309 ~~aLg~~~P~~~ef~rL-n~~-----------------g~kLSKRk~ 337 (619)
...+|...|...+.++| .++ |+|||||..
T Consensus 198 a~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 198 AEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 99999888877666664 566 799999953
No 35
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.66 E-value=6.5e-08 Score=101.20 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=83.4
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-CC------chhchHHHHHHHHHH
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-TN------PEAEKKEYIDHIEEI 154 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-TD------p~re~~e~~~~I~ed 154 (619)
+.+.|++.|+...-.|.+.|.| ||.||||| ..++.|+...+..|..+++.|-| |. ...+..++...|..+
T Consensus 16 ~~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~ 92 (314)
T 2zp1_A 16 SEEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92 (314)
T ss_dssp THHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHH
Confidence 3566777887333368899998 58999999 99999999999889999999944 32 224566778899999
Q ss_pred HHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHh
Q 007060 155 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 201 (619)
Q Consensus 155 L~wLGi~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~ 201 (619)
+.++|++ ..+.+||++... .++...|+ .+.|++|..+|...
T Consensus 93 ~~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~ 133 (314)
T 2zp1_A 93 FEAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRS 133 (314)
T ss_dssp HHHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHH
T ss_pred HHhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhcc
Confidence 9999998 667789998654 23344443 45688888888754
No 36
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.58 E-value=5.7e-08 Score=102.99 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=117.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-------CCchhchHHHHHHHHHHHHHcCCCCC--CcC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEIVQWMGWEPF--KIT 166 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-------TDp~re~~e~~~~I~edL~wLGi~pd--~~~ 166 (619)
.|.+=|-| ||.|||||...++.||...+. +..+++.|.| .||+ +..+....+..++.++|++|+ .+.
T Consensus 6 ~i~sG~~P--TG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if 81 (348)
T 2yy5_A 6 RALTGIQA--SGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLF 81 (348)
T ss_dssp EEEEEECC--CTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred EEEEeeCC--CCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEE
Confidence 35566665 599999999999999976666 7899999999 6775 555667777888899999998 478
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCC
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 246 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~ 246 (619)
+||++.+ +.++.-.| .|.++..++..... +...... .+ + +
T Consensus 82 ~qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~--~k~~~~~--------------~~----------~--~---- 121 (348)
T 2yy5_A 82 LQSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ--FKAKKAE--------------QT----------R--N---- 121 (348)
T ss_dssp EGGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH--HHTTC------------------------------------
T ss_pred ECCcccc-hhHHHHHH-------HhhccHHHHhchHH--HHHHHHh--------------hc----------c--c----
Confidence 9999865 44443333 46777777654321 1000000 00 0 0
Q ss_pred CCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEE
Q 007060 247 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW 320 (619)
Q Consensus 247 n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~ 320 (619)
+.| ......| --.||...-|-. .+.+.+|++.|.|...+.....-+...++ +..|...
T Consensus 122 ---~~~--------~~~~~~g--~~~YPvLQaaDi---l~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l 185 (348)
T 2yy5_A 122 ---PNG--------TLNIPTG--LLTYPALMAGDI---LLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFV 185 (348)
T ss_dssp ----------------CCBTH--HHHHHHHHHHHH---HTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_pred ---ccc--------CCCCChh--hhhhHHHHHHHH---HHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeee
Confidence 000 0000000 123555443332 34689999999999998888777777764 4456554
Q ss_pred e---ccc-cCCCC--ccccccccc
Q 007060 321 E---YSR-LNVSN--TVMSKRKLN 338 (619)
Q Consensus 321 e---f~r-Ln~~g--~kLSKRk~~ 338 (619)
. .++ .+++| +|||||.++
T Consensus 186 ~~~~~~~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 186 QNKDTNRIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp CCTTTTTCBCSSCTTSBCCSSCSC
T ss_pred cccccccccCCCCcchhcCCCCCC
Confidence 4 234 36778 899999987
No 37
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.49 E-value=3.1e-07 Score=96.68 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=113.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CCch--hchHHHHHHHHHHHHHcCCCCC--CcCCC
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPE--AEKKEYIDHIEEIVQWMGWEPF--KITYT 168 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TDp~--re~~e~~~~I~edL~wLGi~pd--~~~~q 168 (619)
|.+=|- |||.|||||...++.||...+. |..+++.|.| |+|. .+..+....+..++-++|++|+ .+.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 445555 4599999999999999987755 8899999999 8531 2445667788888899999998 47899
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCCCC
Q 007060 169 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 248 (619)
Q Consensus 169 Sd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~ 248 (619)
|++.+ +.+.+-.| .|.++..++.... -|.+... . + + ..+
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~------------------~~k~~~~-~---~--------~--~~~- 119 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT------------------QFKEKSA-G---K--------E--AVS- 119 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH------------------HHHHHHT-T---C--------S--SCC-
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH------------------HHHHHHh-c---c--------C--CCC-
Confidence 99854 55555433 2566666554221 0111100 0 0 0 000
Q ss_pred CCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHhC------CCCCcEEe-
Q 007060 249 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE- 321 (619)
Q Consensus 249 ~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aLg------~~~P~~~e- 321 (619)
-| .-.||...=| |=.+.+.++++.|.|...|.....-|...++ +..|....
T Consensus 120 -----------------~g--~f~YPvLQaa---Dil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~ 177 (328)
T 1i6k_A 120 -----------------AG--LLTYPPLMAA---DILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIP 177 (328)
T ss_dssp -----------------HH--HHTHHHHHHH---HHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECC
T ss_pred -----------------ch--hhccHHHHHH---HHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeec
Confidence 00 0124544333 2234689999999999998888877877765 33454333
Q ss_pred --ccc-cCCCC--ccccccccc
Q 007060 322 --YSR-LNVSN--TVMSKRKLN 338 (619)
Q Consensus 322 --f~r-Ln~~g--~kLSKRk~~ 338 (619)
.++ .+++| +|||||.++
T Consensus 178 ~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 178 KVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp SSSSSCBCSSCTTSBCCTTCSC
T ss_pred cccccccCCCCCccCCCCCCCC
Confidence 233 37888 899999987
No 38
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.40 E-value=3.3e-07 Score=97.28 Aligned_cols=182 Identities=19% Similarity=0.150 Sum_probs=113.5
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc------hhchHHHHHHHHHHHHHcCCCCCC--cC
Q 007060 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP------EAEKKEYIDHIEEIVQWMGWEPFK--IT 166 (619)
Q Consensus 95 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp------~re~~e~~~~I~edL~wLGi~pd~--~~ 166 (619)
-.|.+.|.| ||.|||||...++.||...+.....+++.-|.+.- ..+..+....|..++.++|++|++ +.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 368899998 58999999998888997555444456665555431 124556667788888999999984 78
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCCC
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 246 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~~ 246 (619)
+||+..+ +.+++ ..|.|+++..+|... .+..+.++. .|. .++ .
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~-----------~~~k~~~~~-----~~f-~~~------------~ 143 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN-----------PTVKAEIAQ-----KGY-GER------------V 143 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC-----------HHHHHHHHH-----HTC-TTC------------C
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhh-----------hHHHHHHhh-----cCC-CCC------------C
Confidence 8999864 33432 246799988887531 111111100 000 000 0
Q ss_pred CCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHh----C--CCCCcEE
Q 007060 247 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVW 320 (619)
Q Consensus 247 n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aL----g--~~~P~~~ 320 (619)
+ -| --.||.-.=| |=.+.+.++++.|.|...|.....-|...+ | +..|...
T Consensus 144 ~------------------~g--~f~YPvLQAa---Dil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 144 P------------------AG--FFVYPVSQAA---DIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp B------------------HH--HHHHHHHHHH---HHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred c------------------hH--hhhhHHHHHh---hHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 0 00 0124443322 222368999999999999888887777765 4 3455432
Q ss_pred --eccc-cCCCCc-cccccccc
Q 007060 321 --EYSR-LNVSNT-VMSKRKLN 338 (619)
Q Consensus 321 --ef~r-Ln~~g~-kLSKRk~~ 338 (619)
+.++ .+++|+ |||||.++
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2344 377897 99999987
No 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.32 E-value=1.2e-06 Score=92.42 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=112.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcC-CEEEEeeec----CC---ch-hchHHHHHHHHHHHHHcCCCCC--Cc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERG-GYCYLRYDD----TN---PE-AEKKEYIDHIEEIVQWMGWEPF--KI 165 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~-G~~iLRidD----TD---p~-re~~e~~~~I~edL~wLGi~pd--~~ 165 (619)
|.+=|- |||.|||||...++.+|...+..| ..+++-|-| |+ |. ....+....+..++.++|++|+ .+
T Consensus 4 vy~G~~--PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 4 VLSGIQ--PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp EEEEEC--SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 444454 558999999998888998777777 688888888 22 22 2345667778888889999998 47
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhcccccCCceEEEEEecCCC
Q 007060 166 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 245 (619)
Q Consensus 166 ~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~~lR~K~d~~~ 245 (619)
..||++.+ +.+++. .+.|+++..+|...- + |.+...+ +
T Consensus 82 ~~qS~~~~-~~el~~-------~l~~~~~~~~l~r~~-----------~-------~k~r~~~----~------------ 119 (337)
T 2el7_A 82 FVQSHVPE-HTELSW-------VFTTLTPLGDLTRMT-----------Q-------FKDKASK----Q------------ 119 (337)
T ss_dssp EEGGGSTH-HHHHHH-------HHHHTSBHHHHHTSH-----------H-------HHHHTTS----S------------
T ss_pred EEcCcchh-hHHHHH-------HHHccCCHHHHHHhH-----------H-------HHHHhcc----C------------
Confidence 89999864 444443 256888877765320 0 1110000 0
Q ss_pred CCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchHHHHHHHHHh----C--CCCCcE
Q 007060 246 DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYV 319 (619)
Q Consensus 246 ~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~~q~~l~~aL----g--~~~P~~ 319 (619)
...+ -| --.||.-.=|- =.+.+.++++.|.|...|.....-|...+ | +..|..
T Consensus 120 ~~~~----------------~g--~f~YPvLQaaD---il~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~ 178 (337)
T 2el7_A 120 ETVW----------------SG--LLMYPVLQAAD---ILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQA 178 (337)
T ss_dssp SCCB----------------HH--HHHHHHHHHHH---HHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEE
T ss_pred CCCC----------------hH--HHHhHHHHHhh---HHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCee
Confidence 0000 00 01244332222 12368999999999998887777777654 5 455654
Q ss_pred Eec---cc-cCCCC-ccccccccc
Q 007060 320 WEY---SR-LNVSN-TVMSKRKLN 338 (619)
Q Consensus 320 ~ef---~r-Ln~~g-~kLSKRk~~ 338 (619)
..- ++ .+++| +|||||.++
T Consensus 179 ~~~~~~p~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 179 LLNPEAPRVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp ECCTTSCCCBCTTSSSBCCTTTTC
T ss_pred ecccccccccCCCCccccCCCCCC
Confidence 443 34 37889 999999987
No 40
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.14 E-value=5e-06 Score=97.80 Aligned_cols=94 Identities=23% Similarity=0.238 Sum_probs=71.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC---c-------------hhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN---P-------------EAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD---p-------------~re~~e~~~~I~edL~wL 158 (619)
+++=-+|.|||.|||||+++.++-+.+||. ..|.-++..-.+| . ..-..++++.+.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999999993 4465555544443 1 223467899999999999
Q ss_pred CCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd--~~--~~qSd~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98866 43 4555677777788889999999986
No 41
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.09 E-value=6.9e-06 Score=96.50 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=71.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------chhchHHHHHHHHHHHHHc
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 158 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~wL 158 (619)
+++=-+|.|||.|||||++++++-+.+|| ...|.-++..-.+| |..-..++++.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555899999999999999999999999 35676666555444 1222456789999999999
Q ss_pred CCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCccc
Q 007060 159 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 159 Gi~pd--~~--~~qSd~~~~~ye~A~~LI~~G~AY~ 190 (619)
|+..| .. +...+|.........+|.++|++|.
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98866 44 3444566666677789999999986
No 42
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.08 E-value=7e-06 Score=95.73 Aligned_cols=95 Identities=20% Similarity=0.157 Sum_probs=70.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC---c------------------------------
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN---P------------------------------ 140 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD---p------------------------------ 140 (619)
-+++--+|.|||.||||||++.++.+.+|| ...|.-++++-.+| .
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~ 115 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI 115 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence 377888999999999999999999999999 56788888753222 1
Q ss_pred -------hhchHHHHHHHHHHHHHcCCCCC--CcCCCch----hHHHHHHHHHHHHHcCCccc
Q 007060 141 -------EAEKKEYIDHIEEIVQWMGWEPF--KITYTSD----YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 141 -------~re~~e~~~~I~edL~wLGi~pd--~~~~qSd----~~~~~ye~A~~LI~~G~AY~ 190 (619)
..-..++.+.|.+++++||+..| ..+++++ |.........+|.++|.+|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 11123456889999999998765 5555554 33344455679999999985
No 43
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.85 E-value=6e-06 Score=96.46 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=69.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc---------hh-----------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---------EA----------------------- 142 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp---------~r----------------------- 142 (619)
+++==+|.|||.||||||++.++.+.+|| ...|.-+++.-.+|. ++
T Consensus 41 ~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~ 120 (821)
T 1ile_A 41 TVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACR 120 (821)
T ss_dssp CBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred EEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHH
Confidence 44445899999999999999999999999 456777777777762 11
Q ss_pred -chHHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 143 -EKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 143 -e~~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
...++.+.+.+.+++|| ++|+..+++++ |.........+|.++|++|.
T Consensus 121 ~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 01246778889999999 78887766655 33333344568999999987
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.77 E-value=0.00038 Score=74.81 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=110.7
Q ss_pred HHHHHHhhh-cCCeEEEEeCCCCCCcCchhHHHHHH-HHHHHHHHcCCEEEEeeecC-----Cc---hhchHHHHHHHHH
Q 007060 84 EVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----NP---EAEKKEYIDHIEE 153 (619)
Q Consensus 84 ~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDT-----Dp---~re~~e~~~~I~e 153 (619)
+.+.+.++. ..-.|.+=|.|| |.|||||.-.++ .+| +-..+|..+++=|-|- ++ ..+..+....+..
T Consensus 62 ~~l~~~~~~~~p~~i~sG~~PT--G~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~ 138 (392)
T 3jxe_A 62 DLILKDYEEGRGFFLYTGRGPS--GPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNIL 138 (392)
T ss_dssp HHHHHHHHTTCCCEEEEEECCS--SCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeccCCC--CchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHH
Confidence 333344443 223567777765 999999999885 788 4444777555555442 22 2234555666777
Q ss_pred HHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhccccc
Q 007060 154 IVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 231 (619)
Q Consensus 154 dL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~ 231 (619)
++-.+|++|++ +.+||++.. +++.+..|- |.+|-.++.+.- ++. -..+.
T Consensus 139 ~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~--~~~---~~~~~---------------- 189 (392)
T 3jxe_A 139 DIIAVGFDPDKTFIFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF--GFT---EQSKI---------------- 189 (392)
T ss_dssp HHHTTCCCTTSEEEEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--CCC---TTSBH----------------
T ss_pred HHHHhCcCccceEEEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--ccC---CCCch----------------
Confidence 77888999985 789999987 777776663 455555554321 000 00000
Q ss_pred CCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCC-CcceeecccccccchHHHHHHHH
Q 007060 232 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSLCTLEFETRRASYFWLLH 310 (619)
Q Consensus 232 ~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~-gITHviRg~E~~~~~~~q~~l~~ 310 (619)
| --.||...-|-.+ +. .-+++..|.|-..+-..-.-+..
T Consensus 190 -----------------------------------g--~f~YP~LQaaDil---~~~~a~~vpvG~DQ~~hl~l~Rdla~ 229 (392)
T 3jxe_A 190 -----------------------------------G--MIFFPAIQIAPTF---FERKRCLIPAAIDQDPYWRLQRDFAE 229 (392)
T ss_dssp -----------------------------------H--HHHHHHHHHGGGG---SSSSCEEEEEEGGGHHHHHHHHHHTG
T ss_pred -----------------------------------H--HHHHHHHHHhhHH---hhcCCceeecccchHHHHHHHHHHHH
Confidence 0 0124444333222 12 25678889888766655555667
Q ss_pred HhCCCCCcEEecccc-CCCC--ccccccccc
Q 007060 311 ALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 338 (619)
Q Consensus 311 aLg~~~P~~~ef~rL-n~~g--~kLSKRk~~ 338 (619)
.+|...|......+| .++| +|||||..+
T Consensus 230 r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 230 SLGYYKTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp GGTSCCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred HcCCCCCeeeecccccCCCCCccccccCCCC
Confidence 788878876666654 6787 599999976
No 45
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.75 E-value=2.8e-05 Score=91.89 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=69.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------c-----h-------hchHH
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------P-----E-------AEKKE 146 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p-----~-------re~~e 146 (619)
+++==||.|||.||||||++.++-+.+||. ..|.-++..-.+| | + .-..+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 455558999999999999999999999994 4576666655554 1 0 11346
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 007060 147 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 147 ~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~ye~A~~LI~~G~AY~ 190 (619)
+++.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 788999999999995 777766655 33333445568999999987
No 46
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.70 E-value=6.3e-05 Score=88.33 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc---------h---------hc-------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---------E---------AE------------- 143 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp---------~---------re------------- 143 (619)
+++=-||.|||.||||||++.++-+.+|| ...|.-++..-.+|- + +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 45556899999999999999999999999 457888888877772 0 00
Q ss_pred -hHHHHHHHHHHHHHcCCCCC--CcCC--CchhHHHHHHHHHHHHHcCCccc
Q 007060 144 -KKEYIDHIEEIVQWMGWEPF--KITY--TSDYFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 144 -~~e~~~~I~edL~wLGi~pd--~~~~--qSd~~~~~ye~A~~LI~~G~AY~ 190 (619)
..+|.+.|.+.++.||+..| ..++ ..+|.........+|.++|.+|.
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35778899999999998754 4433 33455555566679999999987
No 47
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.66 E-value=2.6e-05 Score=81.78 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-hchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHH
Q 007060 104 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 175 (619)
Q Consensus 104 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ 175 (619)
.|||.|||||...++.+|..-.. |..+++-|-|. |+. .+..+....+..++-.+|++|++ +..||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 46789999999988888765444 65666656553 221 23455666777777889999985 789999864 5
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHH
Q 007060 176 YELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 176 ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
.+++..| .|+++..+|.
T Consensus 89 ~el~~~l-------~~~~~~~~l~ 105 (322)
T 3tzl_A 89 MELYWIL-------SQFTPMGLLE 105 (322)
T ss_dssp HHHHHHH-------GGGCBHHHHH
T ss_pred HHHHHHH-------hccCcHHHHH
Confidence 5554333 5888877765
No 48
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.60 E-value=5.4e-05 Score=90.02 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=67.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------------------------
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------------------- 139 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------------------------- 139 (619)
+++==+|.|||.||||||++.++-+.+||. ..|.-+|+.=..|
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 556668999999999999999999999993 4566666643222
Q ss_pred -----chhchHHHHHHHHHHHHHcCCC--CCCcCCCch----hHHHHHHHHHHHHHcCCccc
Q 007060 140 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD----YFQELYELAVELIRRGHAYV 190 (619)
Q Consensus 140 -----p~re~~e~~~~I~edL~wLGi~--pd~~~~qSd----~~~~~ye~A~~LI~~G~AY~ 190 (619)
+..-...|.+.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1111235668899999999985 556666665 43334455568999999886
No 49
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.58 E-value=0.00028 Score=75.75 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCcceeecCcHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHH-HHHHHHHHHcCCEEEEeeecC--------Cchhc
Q 007060 73 DGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT--------NPEAE 143 (619)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT--------Dp~re 143 (619)
-|.+.....-..+++ .++. ++.+++=-.=.|||.|||||...+ +.+| +-+.+|..+++=|.|. +++ +
T Consensus 61 RG~i~~~~d~~~ll~-~~~~-~~~~~vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~ 136 (386)
T 3hzr_A 61 RGVFLAEKSLDKFLD-DVEA-KKPTFIFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-E 136 (386)
T ss_dssp TTSEEEESSHHHHHH-HHHT-TCCEEEEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-H
T ss_pred CcCccccccHHHHHH-HHhc-CCCeEEEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-H
Confidence 344433333344554 3332 333333334456788999999999 7888 5555677666667762 222 2
Q ss_pred hHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHH
Q 007060 144 KKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVE 181 (619)
Q Consensus 144 ~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~ 181 (619)
..+.......++-.+|++|++ +..||++...++..+.+
T Consensus 137 i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~~~~~~~ 176 (386)
T 3hzr_A 137 ASKMSNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISL 176 (386)
T ss_dssp HHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcceEEEeccHHHHHHHHHHHH
Confidence 334444566667778999975 67889987744444433
No 50
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.41 E-value=0.001 Score=72.43 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=102.3
Q ss_pred cHHHHHHHhhhc-CCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeec----C-Cc---hhchHHHHHH
Q 007060 82 TKEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD----T-NP---EAEKKEYIDH 150 (619)
Q Consensus 82 ~~~~~~~~~~~~-~g~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidD----T-Dp---~re~~e~~~~ 150 (619)
..+.+.+.++.. .-.|.+=|- || |.|||||.-.++ ++| +-+.+|..+++=|-| + || .....+....
T Consensus 89 d~~~l~~~l~~g~~~~vy~G~d--PTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~ 165 (432)
T 2ip1_A 89 DFTKILDLYEQGKPFFLYTGRG--PSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARE 165 (432)
T ss_dssp SHHHHHHHHHHTCCCEEEEEEC--CCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEEEeec--CCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHH
Confidence 344444556542 224566665 56 789999999876 676 444477766666666 2 22 1234455666
Q ss_pred HHHHHHHcCCCCCC--cCCCchhH-HHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHHHHhc
Q 007060 151 IEEIVQWMGWEPFK--ITYTSDYF-QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 227 (619)
Q Consensus 151 I~edL~wLGi~pd~--~~~qSd~~-~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 227 (619)
+..++-.+|++|++ +..||++. ..+++.+..+ . -..+.+++++. +.. -...+.-+
T Consensus 166 ~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v-~------rm~~~~~~k~r----~~~-~~~~s~g~---------- 223 (432)
T 2ip1_A 166 NAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRV-S------RQITGSTAKAV----FGF-NDSDCIGK---------- 223 (432)
T ss_dssp HHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHH-H------TSCCHHHHHHT----TCC-CTTSCHHH----------
T ss_pred HHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHH-H------hhhcHHHHHHH----hCC-CCCCchhh----------
Confidence 67777778999874 78899975 3455554432 0 01222233210 000 00011100
Q ss_pred ccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccc---ccccceeeeCC-----CCcceeecccccc
Q 007060 228 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS---YDYAHCIVDSI-----ENITHSLCTLEFE 299 (619)
Q Consensus 228 G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PT---Y~fa~~VdD~l-----~gITHviRg~E~~ 299 (619)
-.||. ||+-+.-.|.. .+-+++..|.|-.
T Consensus 224 -------------------------------------------f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~ 260 (432)
T 2ip1_A 224 -------------------------------------------FHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQD 260 (432)
T ss_dssp -------------------------------------------HHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGH
T ss_pred -------------------------------------------hhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcH
Confidence 01332 22222212221 3467889999888
Q ss_pred cchHHHHHHHHHhCCCCCcEEecccc-CCCC--ccccccccc
Q 007060 300 TRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 338 (619)
Q Consensus 300 ~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g--~kLSKRk~~ 338 (619)
.|-..=.-|...+|...|...+.++| .++| +||||+..+
T Consensus 261 ~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 261 PYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCC
Confidence 77666666778889888876655554 7889 899999876
No 51
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.39 E-value=0.00056 Score=73.59 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=59.3
Q ss_pred HHHHHHHhhhc-CCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeecCC--------chhchHHHHHHH
Q 007060 83 KEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN--------PEAEKKEYIDHI 151 (619)
Q Consensus 83 ~~~~~~~~~~~-~g~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDTD--------p~re~~e~~~~I 151 (619)
.+.+.+.++.. .-.|.+=|. || |.|||||.-.++ ++| +-+.++..+++-|-|-- ...+..++...+
T Consensus 62 ~~~l~~~l~~g~~~~vy~G~~--PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~ 138 (393)
T 3hv0_A 62 FEKILDVYEKGELFYLYTGRG--PSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYEN 138 (393)
T ss_dssp HHHHHHHHHTTCCCEEEEEEC--CSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCC--CCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHH
Confidence 34344455443 224556665 56 689999999998 778 45555666777786631 112234555667
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHHHHH
Q 007060 152 EEIVQWMGWEPFK--ITYTSDYFQELYE 177 (619)
Q Consensus 152 ~edL~wLGi~pd~--~~~qSd~~~~~ye 177 (619)
..++..+|++|++ +..||++...++.
T Consensus 139 ~~~~lA~GlDp~kt~i~~ns~~~~~~~~ 166 (393)
T 3hv0_A 139 MKDIIACGFDPELTFIFTNLEYIAELYP 166 (393)
T ss_dssp HHHHHTTCCCTTTEEEEEHHHHHHHHHH
T ss_pred HHHHHHcCCCCcceEEEECCHHHHHHHH
Confidence 7777789999985 6678888765543
No 52
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.26 E-value=0.00026 Score=77.10 Aligned_cols=192 Identities=19% Similarity=0.179 Sum_probs=106.6
Q ss_pred cHHHHHHHhhhc-CCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----h------c
Q 007060 82 TKEVLDKHLEVT-GGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------E 143 (619)
Q Consensus 82 ~~~~~~~~~~~~-~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------e 143 (619)
+++.|.+.|+.. .-.|.+=|- ||| .|||||.- ++.++..-...|..+++=|-|- ||. | +
T Consensus 24 ~~~~L~~~L~~~~~~~vy~G~d--PTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~ 100 (432)
T 1h3f_A 24 PEEELLAKLKEGRPLTVKLGAD--PTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEE 100 (432)
T ss_dssp THHHHHHHHHTCSCCEEEEEEC--TTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC--------------------
T ss_pred CHHHHHHHHhcCCCcEEEEccc--CCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHH
Confidence 367788888522 224555555 577 49999999 6777777777777887777772 452 1 1
Q ss_pred hHHHHHHHHHHHHHcCCC--CCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHH
Q 007060 144 KKEYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 219 (619)
Q Consensus 144 ~~e~~~~I~edL~wLGi~--pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l 219 (619)
..+....|...+. .|++ |++ +.+||++...++ + ..+++ +.|+.|...|.+ |+ +...
T Consensus 101 i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~-~-~~~l~----l~~~~tv~~ml~----------~~-~~k~-- 160 (432)
T 1h3f_A 101 TRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT-F-KEVVR----LTSLMTVAQMLE----------RE-DFKK-- 160 (432)
T ss_dssp -HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB-H-HHHHH----HHTTSBHHHHTT----------SH-HHHH--
T ss_pred HHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc-H-HHHHH----HhCcCcHHHHHh----------hh-hHHH--
Confidence 2233344444432 5777 764 789999854321 1 12222 234455444321 00 0100
Q ss_pred HHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccc
Q 007060 220 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE 299 (619)
Q Consensus 220 ~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~ 299 (619)
++..+ ...++ | . -.||... +.|=...+.++++.|.|-.
T Consensus 161 ----r~~~~-----------------~~is~----------------~-e-f~YPlLQ---aaDil~l~~~l~~gG~DQ~ 198 (432)
T 1h3f_A 161 ----RYEAG-----------------IPISL----------------H-E-LLYPFAQ---AYDSVAIRADVEMGGTDQR 198 (432)
T ss_dssp ----HHHTT-----------------CCCBG----------------G-G-GTHHHHH---HHHHHHHTCSEEEEEGGGH
T ss_pred ----HhhcC-----------------CCCCc----------------c-c-cchhhHH---hhhhhhcCccEEEechHHH
Confidence 01000 00000 0 0 0144321 1122223588999999999
Q ss_pred cchHHHHHHHHHhCCCCCcEEecccc-CCCCc-cccccccc
Q 007060 300 TRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 338 (619)
Q Consensus 300 ~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~-kLSKRk~~ 338 (619)
.|-..-.-|...+|..+|.....+.| +++|+ ||||+.++
T Consensus 199 ~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 199 FNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 88887777888898766665555654 67897 99999876
No 53
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0062 Score=65.04 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred HHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-hc---hHHHH-HHH
Q 007060 83 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AE---KKEYI-DHI 151 (619)
Q Consensus 83 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-re---~~e~~-~~I 151 (619)
.+.|.+.|+.. .-.|.+=|-|| |.|||||.-.++.++..-...|..+++=|-|- ||. +. ..+.. ..+
T Consensus 21 ~~~l~~~l~~~~~~~vy~G~~PT--g~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~ 98 (375)
T 2cyc_A 21 VENLRHLFEIGAPLQHYIGFEIS--GYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYF 98 (375)
T ss_dssp HHHHHHHHHHTCCCBEEEEECCC--SCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCcEEEeCCCCC--CCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHH
Confidence 56677777653 34677777755 89999995557777777777777777767662 331 11 22233 334
Q ss_pred H----HHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 152 E----EIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 152 ~----edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
. .++..+|++|++ +..||+..... .+..-|++ +.|+++-.+|.
T Consensus 99 ~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~ 147 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVM 147 (375)
T ss_dssp HHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHH
T ss_pred HHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHh
Confidence 4 778889999974 78999976543 22222332 23455555554
No 54
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.16 E-value=0.00082 Score=72.34 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=53.3
Q ss_pred HHHHHHHhhhcCCeEEEEeCCCCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEeeecC-------CchhchHHHHHHHHH
Q 007060 83 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEE 153 (619)
Q Consensus 83 ~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT-------Dp~re~~e~~~~I~e 153 (619)
..+++ .++. ++.++.=-.=.||| .|||||.-.+ +++| +-+.++..+++-|-|- ....+..++...+..
T Consensus 67 ~~~l~-~~~~-~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~ 143 (395)
T 3i05_A 67 NLLLD-VYES-GQPFYLYTGRGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIK 143 (395)
T ss_dssp HHHHH-HHHT-TCCEEEEEEECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHH-HHhc-CCCeEEEEeecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHH
Confidence 44444 3332 33333333345788 7999999988 6777 4555566666656553 112234456667777
Q ss_pred HHHHcCCCCCC--cCCCchhHH
Q 007060 154 IVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 154 dL~wLGi~pd~--~~~qSd~~~ 173 (619)
++-.+|++|++ +..+|++..
T Consensus 144 ~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 144 DIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp HHHTTTCCTTSEEEEEHHHHTT
T ss_pred HHHHcCCCCCceEEEEcCHHHH
Confidence 77788999986 556666543
No 55
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.07 E-value=0.0024 Score=68.96 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=49.3
Q ss_pred EEEEeCCCCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEeeecC-----Cc--hhchHHHHHHHHHHHHHcCCCCCC--c
Q 007060 97 VLTRFPPEPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-----NP--EAEKKEYIDHIEEIVQWMGWEPFK--I 165 (619)
Q Consensus 97 v~tRFaPsPtG-~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT-----Dp--~re~~e~~~~I~edL~wLGi~pd~--~ 165 (619)
|.+=| .||| .|||||.-.+ +.+| +-+.+|..+++-|-|. ++ ..+..+....+..++-.+|++|++ +
T Consensus 104 vy~G~--~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i 180 (406)
T 3tze_A 104 LYTGR--GPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYI 180 (406)
T ss_dssp EEEEE--CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred EEEee--CCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 44444 5678 7999999988 6788 5566677777766663 11 123345556677777788999875 5
Q ss_pred CCCchhHH
Q 007060 166 TYTSDYFQ 173 (619)
Q Consensus 166 ~~qSd~~~ 173 (619)
..||+...
T Consensus 181 ~~qs~~~~ 188 (406)
T 3tze_A 181 FSNVEASH 188 (406)
T ss_dssp EEHHHHGG
T ss_pred EeccHhHH
Confidence 56666544
No 56
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.89 E-value=0.012 Score=62.79 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=53.8
Q ss_pred cHHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHH--HHHHHcCCEEEEeeecC-----Cch-h---chHHHHH
Q 007060 82 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDF--GLAKERGGYCYLRYDDT-----NPE-A---EKKEYID 149 (619)
Q Consensus 82 ~~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~--~~Ar~~~G~~iLRidDT-----Dp~-r---e~~e~~~ 149 (619)
+++.|++.|+.. .-.|.+=|.| ||.|||||. ++.++ ..-...|..+++=|-|. ||. + .......
T Consensus 43 ~~~~L~~~L~~~~~~~iy~G~~P--Tg~lHlG~g--vl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~ 118 (373)
T 3vgj_A 43 QPDELRVKLLLKRKLICYDGFEP--SGRMHIAQG--LLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGS 118 (373)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECC--CSSCBHHHH--HHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeCCCC--CCCceehhh--HHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHH
Confidence 366677777652 2356666665 579999993 33332 22234566666656552 331 1 2234455
Q ss_pred HHHHHHHHcCCCCCC--cCCCchhH
Q 007060 150 HIEEIVQWMGWEPFK--ITYTSDYF 172 (619)
Q Consensus 150 ~I~edL~wLGi~pd~--~~~qSd~~ 172 (619)
.+..++..+|++|++ +.+||++.
T Consensus 119 ~~~~~~~a~G~dp~k~~i~~~S~~~ 143 (373)
T 3vgj_A 119 YFIEVWKSCGMNMENVQFLWASEEI 143 (373)
T ss_dssp HHHHHHHHTTCCSTTEEEEEHHHHH
T ss_pred HHHHHHHHcCCChhheEEEeChhHH
Confidence 566778889999985 67899986
No 57
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.88 E-value=0.019 Score=62.36 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=105.0
Q ss_pred HHHHHHHhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeec----C-Cchh----------chHH
Q 007060 83 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPEA----------EKKE 146 (619)
Q Consensus 83 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T-Dp~r----------e~~e 146 (619)
++.|.+.|+...-.|.+=|- |||. |||||+- ++.++..-...|-.+++=|-| | ||+| +..+
T Consensus 21 ~e~L~~~L~~~~~~iy~G~d--PTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~ 97 (432)
T 2jan_A 21 LDTLAAEAQRGPMTVYAGFD--PTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE 97 (432)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeeC--CCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence 56677777643334555555 5685 9999955 666676666667777766655 2 4532 1233
Q ss_pred HHHHHHHHH-HHc--CCCCCC--cCCCchhHHH--HHHHHHHHHHcCCcccCCCCHHHHHHhhc--ccCCCCCCCCChHH
Q 007060 147 YIDHIEEIV-QWM--GWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDRPIAE 217 (619)
Q Consensus 147 ~~~~I~edL-~wL--Gi~pd~--~~~qSd~~~~--~ye~A~~LI~~G~AY~c~cs~eel~~~R~--~~~~~~~R~~s~ee 217 (619)
....|.+.+ .|| |++|++ +..||++... +.++... +-|+.|..+|...-. .++. -...+.-
T Consensus 98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~-------l~~~~tv~~m~~~~~~k~r~~--~~~is~~- 167 (432)
T 2jan_A 98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRD-------IGKHFSVNVMLARDTIRRRLA--GEGISYT- 167 (432)
T ss_dssp HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHH-------TGGGCBHHHHHHSHHHHHHTS--TTCCBHH-
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHH-------HhccCcHHHHhcchHHhhhhc--CCCcchH-
Confidence 444444433 344 666764 6789997653 2232221 245566666653210 0000 0000000
Q ss_pred HHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccc---ccccceeeeCCCCcceeec
Q 007060 218 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS---YDYAHCIVDSIENITHSLC 294 (619)
Q Consensus 218 ~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PT---Y~fa~~VdD~l~gITHviR 294 (619)
+ -.||. |||-+.-.+ .+.++++-
T Consensus 168 ---e-------------------------------------------------f~YPlLQaaDil~l~~~--~~~~i~~g 193 (432)
T 2jan_A 168 ---E-------------------------------------------------FSYLLLQANDYVELHRR--HGCTLQIG 193 (432)
T ss_dssp ---H-------------------------------------------------HHHHHHHHHHHHHHHHH--HCCCEEEE
T ss_pred ---H-------------------------------------------------HHHHHHHHHHHHHHhcc--CCCcEEec
Confidence 0 01332 222211000 16788888
Q ss_pred ccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCccccccccc
Q 007060 295 TLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 295 g~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
|.|-..|-..=.-|...++...|.....+.| +++|+||||+.++
T Consensus 194 G~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 194 GADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence 9888877766666777777666655555654 7899999999987
No 58
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.80 E-value=0.0052 Score=64.99 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=61.0
Q ss_pred cHHHHHHHhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc----hhchHHHHHHH
Q 007060 82 TKEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHI 151 (619)
Q Consensus 82 ~~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp----~re~~e~~~~I 151 (619)
+.+.|++.|+. ..-.+.+=|-|| |.|||||.-.++.++..-...|..+++=+-|. || ..+..+....+
T Consensus 27 ~~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~ 104 (348)
T 2j5b_A 27 TLDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104 (348)
T ss_dssp CHHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHH
Confidence 35667778876 222466777665 89999996566666766666677777777662 33 22344566677
Q ss_pred HHHHHHcCCCCCC--cCCCchhHH
Q 007060 152 EEIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 152 ~edL~wLGi~pd~--~~~qSd~~~ 173 (619)
.+++-.+|++|++ +.+||+.+.
T Consensus 105 ~~~~la~Gldp~k~~i~~qs~~~~ 128 (348)
T 2j5b_A 105 IEVFKACGINLDGTRFIWASEFIA 128 (348)
T ss_dssp HHHHHHTTCCGGGEEEEEHHHHHH
T ss_pred HHHHHHhcCCccceEEEECCHhhh
Confidence 7777788999974 678888643
No 59
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.67 E-value=0.0059 Score=67.18 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=39.6
Q ss_pred CcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCC--ccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g--~kLSKRk~~ 338 (619)
+-++|.+|.|-..|-..-.-|...+|...|...+.++| .++| +|||||.++
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCC
Confidence 45777889998877776666778889888876655654 7889 899999876
No 60
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.34 E-value=0.0078 Score=64.23 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=74.3
Q ss_pred cccCCCcceeecCcHHHHHHHhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cch---
Q 007060 69 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPE--- 141 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp~--- 141 (619)
++|+-++. ..+|+..-+...-.|.|=+.| ||.|||||.-.++.++. ..+.+..+++=|-|. ++.
T Consensus 51 i~f~hRd~------d~il~~~e~gk~~~v~sG~~P--TG~lHLGhyv~~~~~~~-lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 51 IIFGHRDF------DKILEAKARGERVAVLTGFMP--SGKFHFGHKLTVDQLIY-LQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp SEEEEESH------HHHHHHHHTTCCCEEEEEECC--CSCCBHHHHHHHHHHHH-HHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred eeeeccCH------HHHHHHHHcCCCCEEEeCcCC--CcHhHHHHHHHHHHHHH-HHhCCCeEEEEEecchhhccCCCCC
Confidence 56666665 566654333333457777765 79999999997655444 445577777777664 221
Q ss_pred -hchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHH
Q 007060 142 -AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 200 (619)
Q Consensus 142 -re~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~~ 200 (619)
.........+..++-.+|++|++ +++||++...+++.+..| .|..+..+++.
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~ 176 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLF-------SGKVTAAEMEA 176 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHH-------TTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHH-------HhhhhHHHHhh
Confidence 11234444555666678999986 789999877777776544 35566666654
No 61
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.30 E-value=0.013 Score=63.83 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCC-eEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeec-C------CchhchHHHHHHHH
Q 007060 83 KEVLDKHLEVTGG-NVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T------NPEAEKKEYIDHIE 152 (619)
Q Consensus 83 ~~~~~~~~~~~~g-~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidD-T------Dp~re~~e~~~~I~ 152 (619)
.+.+.+.++.... .|.+=|- || |.|||||.-.++ .+| +-+.+|..+++-|-| | -...+..+....+.
T Consensus 96 ~~~l~~~l~~~~~~~vy~G~d--PTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~ 172 (437)
T 1r6u_A 96 MNQVLDAYENKKPFYLYTGRG--PSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENA 172 (437)
T ss_dssp HHHHHHHHTTTCCEEEEEEEC--CCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEccc--CCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHH
Confidence 3334444543221 3445554 56 789999999887 566 444467766665554 2 12223455555666
Q ss_pred HHHHHcCCCCCC--cCCCchhHH
Q 007060 153 EIVQWMGWEPFK--ITYTSDYFQ 173 (619)
Q Consensus 153 edL~wLGi~pd~--~~~qSd~~~ 173 (619)
.++-.+|++|++ +..||++..
T Consensus 173 ~~~lA~GlDp~kt~i~~nSd~~~ 195 (437)
T 1r6u_A 173 KDIIACGFDINKTFIFSDLDYMG 195 (437)
T ss_dssp HHHHTTTCCGGGEEEEEHHHHGG
T ss_pred HHHHHhCCCccceEEEechhhhh
Confidence 777778999875 778888765
No 62
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.21 E-value=0.018 Score=66.08 Aligned_cols=189 Identities=16% Similarity=0.194 Sum_probs=101.8
Q ss_pred cHHHHHHHhhhc-CCeEEEEeCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEeeecC-----Cch-h---chHHHHH
Q 007060 82 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYID 149 (619)
Q Consensus 82 ~~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~--n~~~Ar~~~G~~iLRidDT-----Dp~-r---e~~e~~~ 149 (619)
+++.|++.|+.. .-.|.+=|- |||.||||| .++. ++..-...|..+++=|-|. ||. + ...+...
T Consensus 27 ~~~eL~~~L~~~~~~~vy~G~~--PTg~lHLG~--~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~ 102 (690)
T 3p0j_A 27 QESELRNLIEKKPLIRCYDGFE--PSGRMHIAQ--GIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGR 102 (690)
T ss_dssp CHHHHHHHHHHCTTEEEEEEEC--CCSCCBHHH--HHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeeec--CCCcchhHh--hHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHH
Confidence 466777777652 224555555 568999999 3332 2322334555666655553 221 1 1233445
Q ss_pred HHHHHHHHcCCCCCC--cCCCchhHHHH----HHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCCCCCCChHHHHHHHH
Q 007060 150 HIEEIVQWMGWEPFK--ITYTSDYFQEL----YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFE 223 (619)
Q Consensus 150 ~I~edL~wLGi~pd~--~~~qSd~~~~~----ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe 223 (619)
.+..++..+|++|++ +.+||+++..+ +.....+ | +.+|-.+|... .+.
T Consensus 103 ~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i---~----~~~tv~~m~~~-----------~~~-------- 156 (690)
T 3p0j_A 103 YLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI---G----RQNTIARIKKC-----------CTI-------- 156 (690)
T ss_dssp HHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH---H----HTSCHHHHHTT-----------C----------
T ss_pred HHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH---H----hhCCHHHHHhh-----------hhh--------
Confidence 667778889999985 67899876432 2322222 1 12333333210 000
Q ss_pred HHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceecccccccceeeeCCCCcceeecccccccchH
Q 007060 224 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 303 (619)
Q Consensus 224 ~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PTY~fa~~VdD~l~gITHviRg~E~~~~~~ 303 (619)
.| |.. . +.+ -| --.||.-+-|-. .+.+.++++.|.|-..+-.
T Consensus 157 ---~~---------r~~----~-~i~----------------~g--~f~YPlLQAaDi---l~~~ad~vpvG~DQ~~~l~ 198 (690)
T 3p0j_A 157 ---MG---------KTE----G-TLT----------------AA--QVLYPLMQCCDI---FFLKADICQLGLDQRKVNM 198 (690)
T ss_dssp ---------------------C-CCC----------------CS--CSSHHHHHHHHH---HHTTCSEECCBGGGHHHHH
T ss_pred ---hh---------hcc----C-CCc----------------hh--hHhhHHHHHHHH---HhhCCCEEeccccHHHHHH
Confidence 00 000 0 000 01 012554433322 2347889999998877665
Q ss_pred HHHHHHHHhCCC-CCcEEecccc-CC-CCc-cccccccc
Q 007060 304 SYFWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 338 (619)
Q Consensus 304 ~q~~l~~aLg~~-~P~~~ef~rL-n~-~g~-kLSKRk~~ 338 (619)
.=.-+...+|.. .|...+.++| .+ +|+ ||||+..+
T Consensus 199 l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~ 237 (690)
T 3p0j_A 199 LAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPD 237 (690)
T ss_dssp HHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGG
T ss_pred HHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCC
Confidence 556667778764 5766566664 66 785 99999863
No 63
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.12 E-value=0.17 Score=54.73 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=103.5
Q ss_pred HHHHHHHhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----h------chH
Q 007060 83 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 145 (619)
Q Consensus 83 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------e~~ 145 (619)
++.|++.|+...-.+.+=|- |||. |||||.- ++.++..-...|-.+++=|-|- ||. | +..
T Consensus 21 ~~~L~~~L~~~~~~iy~G~d--PTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~ 97 (420)
T 1jil_A 21 EQGIEDLLNKEQVTLYCGAD--PTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD 97 (420)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeeC--CCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH
Confidence 56677788644445566665 5688 9999988 5677766666677766666552 442 1 233
Q ss_pred HHHHHHHHHHHHcCCCC---CC--cCCCchhHHH--HHHHHHHHHHcCCcccCCCCHHHHHHhhcccCCCC-CCCCChHH
Q 007060 146 EYIDHIEEIVQWMGWEP---FK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-WRDRPIAE 217 (619)
Q Consensus 146 e~~~~I~edL~wLGi~p---d~--~~~qSd~~~~--~ye~A~~LI~~G~AY~c~cs~eel~~~R~~~~~~~-~R~~s~ee 217 (619)
+....|.+.+..+ ++| ++ +..+|+.... ++++ |.. +-|+.|..+|.+. ..+... -...+.-+
T Consensus 98 ~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~--~~~k~r~~~~is~~e 167 (420)
T 1jil_A 98 KNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGK--DSIQSRLEHGISYTE 167 (420)
T ss_dssp HHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTC--GGGHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcc--hhhhhhccCCcchHH
Confidence 4556666655444 555 43 6678877543 2232 211 2344455555421 000000 00000000
Q ss_pred HHHHHHHHhcccccCCceEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcceeccc---ccccceeeeCCCCcceeec
Q 007060 218 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS---YDYAHCIVDSIENITHSLC 294 (619)
Q Consensus 218 ~l~~fe~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~R~~~~~h~~~g~~w~i~PT---Y~fa~~VdD~l~gITHviR 294 (619)
-.||. |||-+.-. -.+.++++-
T Consensus 168 -----------------------------------------------------f~YplLQaaD~l~l~~--~~~~~i~~g 192 (420)
T 1jil_A 168 -----------------------------------------------------FTYTILQAIDFGHLNR--ELNCKIQVG 192 (420)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHH--HHCEEEEEE
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHhc--cCCCcEEec
Confidence 01332 22221100 016777888
Q ss_pred ccccccchHHHHHHHHHh-CCCCCcEEecccc-CCCCccccccccc
Q 007060 295 TLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 295 g~E~~~~~~~q~~l~~aL-g~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
|.|-..|-..=.-|...+ +...|.....+.| .++|+||||+.++
T Consensus 193 G~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~n 238 (420)
T 1jil_A 193 GSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238 (420)
T ss_dssp EGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSS
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCC
Confidence 888877766666677778 7666655555654 7899999999976
No 64
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.61 E-value=0.075 Score=56.32 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=28.9
Q ss_pred CcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
+.++++.|.|-..+-..=.-|...++...|.....+.| .++|+||||+.++
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~n 261 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGN 261 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCC
Confidence 78899999998887777677778888766665555654 6789999999866
No 65
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.24 E-value=0.37 Score=52.12 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CcceeecccccccchHHHHHHHHHh-CCCCCcEEecccc-CCCCccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aL-g~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
+.++++-|.|-..|-..=.-|...+ +...|.....+.| ..+|+||||+.++
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~n 237 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESG 237 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCC
Confidence 6777888888877766666667777 7666655555654 7899999999876
No 66
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.22 E-value=0.024 Score=66.17 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred cEEeccc-cCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHHHH
Q 007060 318 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 396 (619)
Q Consensus 318 ~~~ef~r-Ln~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~~r 396 (619)
.+|-+|. +..+|+|||||+|| ..++..+.++ |.++|+|-|+++.+....+..++.+.+.+.++
T Consensus 577 ~v~~hg~vl~~~G~KMSKS~GN---------------vV~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~ 640 (821)
T 1ile_A 577 NVICHGLILDEKGQKMSKSKGN---------------VVDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVR 640 (821)
T ss_dssp EEEEECCEECTTSSCCCTTTTC---------------CCCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred eEEEEeeEECCCCCCCCccCCC---------------CCCHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH
Confidence 4677787 45699999999998 4678888876 99999999999988555666788888887555
Q ss_pred HHhhc
Q 007060 397 EELNK 401 (619)
Q Consensus 397 ~~~~~ 401 (619)
+++++
T Consensus 641 ~~~~k 645 (821)
T 1ile_A 641 DYFLT 645 (821)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 55544
No 67
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=94.93 E-value=0.027 Score=61.54 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcCC--eEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeecC-----C---chhchHHHHHH
Q 007060 83 KEVLDKHLEVTGG--NVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N---PEAEKKEYIDH 150 (619)
Q Consensus 83 ~~~~~~~~~~~~g--~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDT-----D---p~re~~e~~~~ 150 (619)
.+.+.+.++. ++ .|.+=| .|| |.|||||.-.++ ++| +-+.++..+++-|.|- + ...+..+....
T Consensus 79 l~~ll~~l~~-g~p~~vytG~--dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~ 154 (451)
T 3foc_A 79 FEEFLSYYEK-GHPIYIYTGR--GPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRE 154 (451)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCeEEEecC--CCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHH
Confidence 3444444443 23 344555 467 789999999887 788 5555677788877773 1 11223445556
Q ss_pred HHHHHHHcCCCCCC--cCCCchhHH--HHHHHHHHHHHcCCcccCCCCHHHHHHh
Q 007060 151 IEEIVQWMGWEPFK--ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEY 201 (619)
Q Consensus 151 I~edL~wLGi~pd~--~~~qSd~~~--~~ye~A~~LI~~G~AY~c~cs~eel~~~ 201 (619)
+..++-.+|++|++ +..||+++. .+++.+..|- +..|-.++.+.
T Consensus 155 ~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~~ 202 (451)
T 3foc_A 155 NIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD-------RMLPISQLRAS 202 (451)
T ss_dssp HHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHHH
T ss_pred HHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH-------hhCCHHHHHhh
Confidence 66666667999875 678888763 3455544432 34455555543
No 68
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=94.46 E-value=0.073 Score=57.06 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CchhchHHHHHHHHHHHHHcCCCCCC--cCC
Q 007060 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 167 (619)
Q Consensus 97 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--~~~ 167 (619)
|.+=|- |||.|||||.-.++.||..-.. +..+++=|-|. ||+ ...+....+..++-.+|++|++ +++
T Consensus 38 i~sG~~--PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~kt~if~ 113 (388)
T 3prh_A 38 IFSGIQ--PSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEKATLFI 113 (388)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEe
Confidence 455554 6799999999988888764443 55666656553 222 2345555667777789999986 789
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 168 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 168 qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
||+..+ +.+++-.| .|..+--++.
T Consensus 114 qS~v~~-~~el~w~l-------~~~~~~~~L~ 137 (388)
T 3prh_A 114 QSEVPA-HAQAGWMM-------QCVAYIGELE 137 (388)
T ss_dssp GGGSTH-HHHHHHHH-------HTTSCHHHHH
T ss_pred cccccc-hHHHHHHH-------HhhccHHHHH
Confidence 999753 44554333 4677766654
No 69
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=93.69 E-value=0.074 Score=61.91 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.2
Q ss_pred CcEE-eccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 317 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 317 P~~~-ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
|..| ++|++..+|.|||||++| ..++..+.++ |.++|+|-|++..+--..+..++.+.++..
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 635 PKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp CCEEEEECCEEETTBCCCTTTTC---------------CCBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred ccEEEEEeEEEeCCeehhhcCCC---------------cCCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 4444 568888899999999998 4678888876 889999999986665555556666666543
No 70
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=93.47 E-value=0.12 Score=61.59 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=46.1
Q ss_pred EEeccccCCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 319 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 319 ~~ef~rLn~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
...+|++..+|.|||||+|| ..++..+.++ |.+.|+|-|++..+-...+..++.+.+++.
T Consensus 638 v~~~G~v~~~G~KMSKS~GN---------------vv~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 638 IAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp EEEECCEEESSSCCCTTTCC---------------CCBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred EEEeeEEeeCCEEccccccC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 44578888899999999998 4688888876 999999999987665555555665555443
No 71
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.20 E-value=0.096 Score=55.19 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=58.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cc--hhchHHHHHHHHHHHHHcCCCCCC--cCC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITY 167 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp--~re~~e~~~~I~edL~wLGi~pd~--~~~ 167 (619)
.|.+=|- |||.|||||.-.++-+|..-.. +..+++=|-|- ++ ..+..+....+..++-.+|++|++ +++
T Consensus 8 ~v~sG~~--PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 8 IVLSGVQ--PSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp EEEEEEC--SSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred EEEeCcC--CCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 4566665 5689999999988877743332 34555555542 22 123455666677777788999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 168 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 168 qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
||+..+ +.+++-.| .|.++.-++.
T Consensus 85 qS~v~~-~~el~~~l-------~~~~~~~~l~ 108 (341)
T 3sz3_A 85 QSHVPE-HAQLGWVL-------NCYTQMGELS 108 (341)
T ss_dssp GGGCTH-HHHHHHHH-------HTTSCHHHHH
T ss_pred ccchhh-hHHHHHHH-------HhhccHHHHH
Confidence 999753 33433223 4666666665
No 72
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=92.29 E-value=0.15 Score=53.85 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CchhchHHHHHHHHHHHHHcCCCCCC--cC
Q 007060 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--IT 166 (619)
Q Consensus 96 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--~~ 166 (619)
.|.+=|- |||.|||||.-.++-+|.-- +.+..+++=|-|. ||+ ...+....+..++-.+|++|++ ++
T Consensus 17 ~i~sG~~--PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 17 IVFSGAQ--PSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp EEEEEEC--SCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred EEEECcC--CCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceEEE
Confidence 4566665 56999999998888777422 2244555555552 332 3345556677777789999986 78
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 007060 167 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199 (619)
Q Consensus 167 ~qSd~~~~~ye~A~~LI~~G~AY~c~cs~eel~ 199 (619)
+||++.+ ..+++-. +.|.++.-++.
T Consensus 93 ~qS~v~~-~~el~~~-------l~~~~~~~~l~ 117 (346)
T 3n9i_A 93 VQSHVPE-HSQLSWA-------LNCYTYFGELS 117 (346)
T ss_dssp EGGGCTH-HHHHHHH-------HHTTSBHHHHH
T ss_pred ecccccc-chHHHHH-------HHHHhhHHHHH
Confidence 9999754 3343322 34666655554
No 73
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=91.20 E-value=0.37 Score=57.06 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=43.7
Q ss_pred cEEeccccC-CCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHH
Q 007060 318 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 393 (619)
Q Consensus 318 ~~~ef~rLn-~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~ 393 (619)
..+.+|++. .+|.|||||+|| ..+...+.++ |.++|+|-|+++ +-...+..++.+.|..
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGN---------------vV~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGN---------------VIVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQ 640 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSC---------------CCCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCC---------------cCChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHH
Confidence 366778876 499999999998 4678888875 999999999998 4333444566655543
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=91.18 E-value=0.16 Score=59.62 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=47.3
Q ss_pred cEEecccc-CCCCccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHHH
Q 007060 318 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 394 (619)
Q Consensus 318 ~~~ef~rL-n~~g~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~~ 394 (619)
.+|-+|.+ ..+|.|||||+|| ..+...+.++ |.+.|+|-|+++.+....+..++.+.++..
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGN---------------VIDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEEeeeEEcCCCCCccccCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 46667765 5799999999998 3577788775 889999999998866666666777666653
No 75
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=90.47 E-value=0.35 Score=57.01 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=35.4
Q ss_pred cccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHH
Q 007060 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 392 (619)
Q Consensus 331 kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le 392 (619)
|||||++| ..++..+.++ |.+.|+|-|++..+--..+..++.+.++
T Consensus 639 KMSKSkGN---------------vVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie 684 (880)
T 4arc_A 639 KMSKSKNN---------------GIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVE 684 (880)
T ss_dssp ECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHH
T ss_pred cccCcCCC---------------CCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHH
Confidence 99999999 4678888877 9999999999998644444445544444
No 76
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=89.43 E-value=0.73 Score=52.86 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred EEeCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEeeecC-----Cc----hhchHHHHHHHHHHHHHcCCCCC-CcC
Q 007060 99 TRFPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEEIVQWMGWEPF-KIT 166 (619)
Q Consensus 99 tRFaPsPtG~LHIGhaRaal~--n~~~Ar~~~G~~iLRidDT-----Dp----~re~~e~~~~I~edL~wLGi~pd-~~~ 166 (619)
+=|-| |+|.||+||+-.++. +-..--..|+..++=|-|- |+ ..+..++......++..||+++. ++.
T Consensus 385 ~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv 463 (690)
T 3p0j_A 385 CMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIV 463 (690)
T ss_dssp EEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEE
T ss_pred EEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEE
Confidence 44778 999999999998775 3333334588888888775 23 12234555666777889999863 578
Q ss_pred CCchhHHH----HHHHHHHH
Q 007060 167 YTSDYFQE----LYELAVEL 182 (619)
Q Consensus 167 ~qSd~~~~----~ye~A~~L 182 (619)
++|+.... |+..+.+|
T Consensus 464 ~~S~~~~~~~~~~~~~vi~l 483 (690)
T 3p0j_A 464 TENEVILGNCDDFWVSVIGI 483 (690)
T ss_dssp EHHHHHHHTHHHHHHHHHHH
T ss_pred ECCchhccchhhHHHHHHHH
Confidence 89986543 44444444
No 77
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=88.37 E-value=0.64 Score=48.39 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=54.4
Q ss_pred cHHHHHHHhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cch-----h------ch
Q 007060 82 TKEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EK 144 (619)
Q Consensus 82 ~~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------e~ 144 (619)
..+.|.+.|+...-.|.+=|- |||. |||||.- ++.++..-...|..+++=+-|. ||. | +.
T Consensus 21 ~~~~l~~~l~~~~~~vy~G~~--PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i 97 (322)
T 2yxn_A 21 DEEALAERLAQGPIALVCGFD--PTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETV 97 (322)
T ss_dssp SHHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH
T ss_pred CHHHHHHHHcCCCCEEEEeec--CCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHH
Confidence 356677777743345666665 5688 9999988 6777776666777777766652 332 1 22
Q ss_pred HHHHHHHHHHHH-H--cCCCCCC--cCCCchhH
Q 007060 145 KEYIDHIEEIVQ-W--MGWEPFK--ITYTSDYF 172 (619)
Q Consensus 145 ~e~~~~I~edL~-w--LGi~pd~--~~~qSd~~ 172 (619)
.+..+.|.+.+. | +|++|++ +..||+..
T Consensus 98 ~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~ 130 (322)
T 2yxn_A 98 QEWVDKIRKQVAPFLDFDCGENSAIAANNYDWF 130 (322)
T ss_dssp HHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence 334444455543 3 3777764 67788764
No 78
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=83.57 E-value=5.6 Score=42.53 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeec
Q 007060 83 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD 137 (619)
Q Consensus 83 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidD 137 (619)
++.|++.++...-.|.+=|- |||. |||||.- ++.++..-...|-.++.=|-|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~d--PTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGID--PTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEEC--CCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 56777777654445666666 5688 9999998 567776556666666665544
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=83.33 E-value=1.2 Score=52.34 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=37.5
Q ss_pred ccccccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHcCccCCCcchhHhHHHH
Q 007060 330 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 393 (619)
Q Consensus 330 ~kLSKRk~~~lV~~g~v~gWDDPR~~Tl~~lrrrG~~peAI~~fl~~lG~s~~~~~~~~~~Le~ 393 (619)
.|||||++| ..+...+.++ |.+.|+|-|++..+-...+..++.+.++.
T Consensus 636 ~KMSKSkGN---------------vVdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 636 AVMSKSKGN---------------GVMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQG 683 (878)
T ss_dssp EECSGGGTC---------------CCBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred HHhhccCCC---------------cccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHH
Confidence 899999999 4678888876 99999999999876655665566555543
No 80
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=29.60 E-value=48 Score=35.22 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=30.4
Q ss_pred CcceeecccccccchHHHHHHHHHh-----------------CCCCCcEEecccc-CCCCccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHAL-----------------GLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aL-----------------g~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
+.++++-|.|-..|-..=.-|...+ +...|.....++| .++|+||||+.++
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~n 300 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGN 300 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSS
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCC
Confidence 4677777777654443333333222 2234544555554 7899999999876
No 81
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=26.64 E-value=30 Score=37.62 Aligned_cols=48 Identities=15% Similarity=-0.073 Sum_probs=33.7
Q ss_pred eeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCc--cccccccc
Q 007060 291 HSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT--VMSKRKLN 338 (619)
Q Consensus 291 HviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~--kLSKRk~~ 338 (619)
+|..|.|-..+-..-.-+...+|.+.|...+..+| .++|. |||||..+
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~n 340 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPN 340 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGG
T ss_pred eeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCC
Confidence 56788876655554455556788888876655554 67775 99999976
No 82
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=25.88 E-value=41 Score=34.66 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=36.0
Q ss_pred CcceeecccccccchHHHHHHHHHhCCCCCcEEecccc-CCCCccccccccc
Q 007060 288 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 338 (619)
Q Consensus 288 gITHviRg~E~~~~~~~q~~l~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~ 338 (619)
+.+..+=|.|-..|-..-.-|...++...+.....+.| .++|+||||+.++
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n 242 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG 242 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTE
T ss_pred CceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCC
Confidence 45544458887777666666677777666655555654 6789999999986
No 83
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=23.49 E-value=47 Score=36.06 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccC
Q 007060 146 EYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVD 191 (619)
Q Consensus 146 e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ye~A~~LI~~G~AY~c 191 (619)
...+.|.++++.||+..|....-|+..+.+-+.+++|.++|.+|..
T Consensus 146 ~~l~~~~~~~~~l~V~fD~~~~Ess~~~~~~~vv~~L~~~g~~~e~ 191 (464)
T 3fnr_A 146 KMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQ 191 (464)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEGGGGSTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCceeecCHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 4466789999999999987555545444455777899999999963
Done!