RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007060
(619 letters)
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 1271 bits (3290), Expect = 0.0
Identities = 524/620 (84%), Positives = 559/620 (90%), Gaps = 7/620 (1%)
Query: 1 MYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPE 60
+YELLGE+TAAD EK KKK KEKP K E+KK A A EE+L P S FP PE
Sbjct: 175 LYELLGEKTAADNEKPVKKK-----KEKPAKVEEKKVA-VAAAPPSEEELNPYSIFPQPE 228
Query: 61 ENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVD 120
EN+KVHTE+ FSDGSVL NTKE+L+KHL+ TGG V TRFPPEPNGYLHIGHAKAMFVD
Sbjct: 229 ENFKVHTEVFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVD 288
Query: 121 FGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAV 180
FGLAKERGG CYLR+DDTNPEAEKKEYIDHIEEIV+WMGWEPFKITYTSDYFQELYELAV
Sbjct: 289 FGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAV 348
Query: 181 ELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 240
ELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPI ESLKLFEDMR G IEEGKATLRMK
Sbjct: 349 ELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMK 408
Query: 241 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFET 300
QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS+ENITHSLCTLEFET
Sbjct: 409 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFET 468
Query: 301 RRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 360
RRASY+WLL +LGLYQPYVWEYSRLNV+NTVMSKRKLN LVT KYVDGWDDP L+TLAGL
Sbjct: 469 RRASYYWLLDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGL 528
Query: 361 RRRGVTSTSINAFVQGIGISRSD-SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 419
RRRGVT T+INAF +GIGI+RSD SLIR+DRLE+HIREELNKTAPRTMVVL+PLKVVITN
Sbjct: 529 RRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITN 588
Query: 420 MESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLL 479
+ESG ++ LDAKRWPDAQ DD SAFYKVPFS VVYIE SDFR+KDSKDYYGLAPGKSVLL
Sbjct: 589 LESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLL 648
Query: 480 RYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFE 539
RYAFPIKCT+V+L+DD ET++ IRAEYDP KKTKPKGVLHWVAEPSPGV PL+VEVRLF+
Sbjct: 649 RYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFD 708
Query: 540 KLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTP 599
KLF SENPAEL+DWL DLNP SK VI AYA PSL A VGDRFQFERLGYFAVDKDSTP
Sbjct: 709 KLFLSENPAELEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTP 768
Query: 600 EKLVFNRTVTLKDSFPKGGK 619
EKLVFNRTVTLKDS+ KGGK
Sbjct: 769 EKLVFNRTVTLKDSYGKGGK 788
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 753 bits (1946), Expect = 0.0
Identities = 282/535 (52%), Positives = 353/535 (65%), Gaps = 22/535 (4%)
Query: 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
V TRFPPEPNGYLHIGHAK++ ++FGLA++ GG C LR+DDTNPE E +EY+D I+E
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 155 VQWMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSP 209
V+W+G++ ++ Y SDYF +LYE AVELI++G AYVD + EEI+EYR E NSP
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSP 147
Query: 210 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 269
+RDR + E+L LFE MR G EG A LR K DM + N NM D + YRI+ H GDK
Sbjct: 148 YRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDK 207
Query: 270 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVS 328
WCIYP YD+AHCI D+IE ITHSLCTLEFE R Y W+L L + P +E+SRLN++
Sbjct: 208 WCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNLT 267
Query: 329 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 388
TVMSKRKL LV K+VDGWDDP + T++GLRRRG T SI F + IG+++ DS+I +
Sbjct: 268 YTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDM 327
Query: 389 DRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVP 448
LE IRE+LN+ APR M VL+PLK+VITN G + L+A P+ D +VP
Sbjct: 328 SMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVP 384
Query: 449 FSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP 508
FS +YIE DF + K Y+ L PGK V LR A+ IKC EV+ D I I YDP
Sbjct: 385 FSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNAYVIKCEEVV-KDADGNITEIHCTYDP 443
Query: 509 ---SKKT----KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDS 561
S K KG +HWV+ + + EVRL+++LF NPA D+L LNPDS
Sbjct: 444 DTLSGNPADGRKVKGTIHWVSAA----HAVPAEVRLYDRLFTVPNPAAGKDFLDFLNPDS 499
Query: 562 KVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPK 616
V+ + + EPSL A DRFQFER GYF DKDSTP KLVFNRTV L+DS+ K
Sbjct: 500 LVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAK 553
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 589 bits (1521), Expect = 0.0
Identities = 248/551 (45%), Positives = 339/551 (61%), Gaps = 24/551 (4%)
Query: 84 EVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 142
E++++ LE V+TRFPPEPNGYLHIGHAK++ ++FG+A++ GG C+LR DDTNPE
Sbjct: 18 EIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPET 77
Query: 143 EKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 201
E EY++ I++ V+W+G++ + Y SDYF+ +Y A +LI+ G AYVD + EEI+E
Sbjct: 78 EDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137
Query: 202 R----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 257
R E SP+RDR + E+L LF MR G +G LR K DM + N + D + YR
Sbjct: 138 RGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYR 197
Query: 258 IKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-- 315
I+ H GD+WCIYP YD+AH + D+IE +THS+CTLEFE RA Y W+L LG +
Sbjct: 198 IRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPP 257
Query: 316 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 375
+P +E++RL + TVMSKRKL LV YV GWDDP + T+AG RRRGVT +I F
Sbjct: 258 RPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFAD 317
Query: 376 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 435
IG+++++S + + LE+ IR++LN+ APR M VL+PLKVVI N+ +G + LD WP
Sbjct: 318 QIGVAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPH 377
Query: 436 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 495
+ S KVPF+ +YIE DF K + L PG+ V LR A+ I+C EV+ D
Sbjct: 378 DVPKEGSR--KVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLRGAYIIRCDEVV-RDA 434
Query: 496 KETILHIRAEYDPSKKT------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAE 549
+ +R YDP K GV+HWV+ L EVRL+++LF P
Sbjct: 435 DGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKH----ALPAEVRLYDRLFKVPQPEA 490
Query: 550 LD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRT 607
D D+L LNPDS V + EP++ R+QFER GYF D DS P+ LVFNR
Sbjct: 491 ADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRI 549
Query: 608 VTLKDSFPKGG 618
+TLKD++
Sbjct: 550 ITLKDTWGARA 560
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 572 bits (1475), Expect = 0.0
Identities = 262/532 (49%), Positives = 343/532 (64%), Gaps = 24/532 (4%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V TRFPPEPNGYLHIGHAK++ ++FG AK G C LR+DDTNP E EY++ I+ V+
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 157 WMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWR 211
W+G++ KI Y+SDYF ELY A ELI++G AYVD TPEEI+EYR + NSP+R
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYR 120
Query: 212 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 271
DR I E+L LFE MR+G+ +EGKA LR K DM + M D +AYRIKF PH G KWC
Sbjct: 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWC 180
Query: 272 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 330
IYP YD+ HCI D++ENITHSLCTLEF+ R Y W+L + ++ +P +E+SRLN+ T
Sbjct: 181 IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240
Query: 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 390
V+SKRKL LV +K+V GWDDP + T++GLRRRG T SI F IG+++ D+ I + R
Sbjct: 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVR 300
Query: 391 LEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 450
LE IRE+LN+ APR M V++P++VVI N+ + P+ +VPF+
Sbjct: 301 LESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL----ATIPNHPNTPEFGERQVPFT 356
Query: 451 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYD--- 507
N YI+ +DFR + +K Y L GK V LR A+ IK E + D I I YD
Sbjct: 357 NEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAAGKITTIFCTYDNKT 415
Query: 508 ----PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 563
P+ K KGV+HWV + E RL+++LF NP DD+LS +NP+S +
Sbjct: 416 LGKEPADGRKVKGVIHWV----SASSKYPTETRLYDRLFKVPNPGAPDDFLSVINPES-L 470
Query: 564 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 614
VI + + E SL A RFQFER GYF +D K+ST EK+VFNRTV+LKD+
Sbjct: 471 VIKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 573 bits (1477), Expect = 0.0
Identities = 263/542 (48%), Positives = 370/542 (68%), Gaps = 15/542 (2%)
Query: 79 CCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT 138
C NT E+L+KH VTGG RFPPEPNG+LHIGHAK+M ++FG A+ GG CYLRYDDT
Sbjct: 34 CRNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT 93
Query: 139 NPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI 198
NPE E++ YID I E+V+WMGW+P +T++SDYF +L+E AV+LI+ G AYVDH TP+E+
Sbjct: 94 NPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDEL 153
Query: 199 KEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 258
K+ RE++ +SPWR+R + E+L LFE MR GR EG+ATLR+K DM++DN NM D IAYR+
Sbjct: 154 KQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRV 213
Query: 259 KFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 318
K+ HPHA DKWCIYPSYD+ HC++DS+E+I +SLCTLEFETRR SYFWLL L L++P+
Sbjct: 214 KYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPH 273
Query: 319 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 378
VWE+SRLNV+ +++SKRK+N LV V G+DDP L+TLAG+RRRG T +IN F + +G
Sbjct: 274 VWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVG 333
Query: 379 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESG-TIMHLDAKRWPDAQ 437
I+RS ++I++ LE +RE+L++ R ++V++P+KVV+ N + + R P+
Sbjct: 334 ITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGEREFECPNHPRKPELG 393
Query: 438 ADDASAFYKVPFSNVVYIEHSDFRMKDS-KDYYGLAPGKSVL-LRYAFPIKCTEVILSDD 495
+ KV F++ Y++ SDFR +D+ +YGLAPG V+ L+Y+ + C +
Sbjct: 394 SR------KVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAA 447
Query: 496 KETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLS 555
+ + I + D +K KPK + WV+ P VEVRL+ L + A ++L
Sbjct: 448 GQPSV-IHVDIDFERKDKPKTNISWVSA--TACTP--VEVRLYNALLKDDRAAIDPEFLK 502
Query: 556 DLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFP 615
++ DS+VV YAE + +A + Q ER GYF VD D+ P+ LV NR + L++
Sbjct: 503 FIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGLREDKE 561
Query: 616 KG 617
K
Sbjct: 562 KA 563
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 409 bits (1053), Expect = e-140
Identities = 136/313 (43%), Positives = 173/313 (55%), Gaps = 10/313 (3%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V TRF P P GYLHIGHA+ ++ AK G LR+DDT+PE EK EY + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLK 61
Query: 157 WMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM--NSPWRDR 213
W+G + K Y SD F Y+ A ELI +G AYV TPEE++E RE++ SP R R
Sbjct: 62 WLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPR 121
Query: 214 PIAESLKLFEDM-RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP---HPHAGDK 269
E L+LFE+ R G E GKATLR K M++ + M DL+ RIKF P H G K
Sbjct: 122 YDEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGLK 180
Query: 270 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVS 328
W YP+YD+A I D+I ITH L E W+ ALG P++ EY RLN+
Sbjct: 181 WDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLD 240
Query: 329 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 388
T +SKRKL+ V V GW DP L LRRRG T I F + +S L R+
Sbjct: 241 GTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRV 300
Query: 389 -DRLEYHIREELN 400
LE R++L+
Sbjct: 301 SKSLEAFDRKKLD 313
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 325 bits (836), Expect = e-105
Identities = 152/510 (29%), Positives = 213/510 (41%), Gaps = 59/510 (11%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V TRF P P GYLHIGHA+ +++ A++ GG LR +DT+PE E E D I E ++
Sbjct: 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLE 69
Query: 157 WMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------NSP 209
W+G + + Y S+ F YE A +LI +G AYV + TPEE++E RE + S
Sbjct: 70 WLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSY 129
Query: 210 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPH-AG 267
RD +L LFE M + E G A +R+K M + DL+ RI F P HP
Sbjct: 130 DRD---ERNLTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVI 185
Query: 268 DKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 326
++ YP+Y++A + D + ITH L + WL ALG P L N
Sbjct: 186 LRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245
Query: 327 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 386
+SKRK + V+GW P L L L RG +I F GI D I
Sbjct: 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTI 305
Query: 387 RLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYK 446
R++L+ PR M V P++VVI N++ + K
Sbjct: 306 VSKSPAAFDRKKLDWLNPRYMRVD-PVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTK 364
Query: 447 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY 506
++ IE DF + + V L+ + EV+ D AE
Sbjct: 365 ---ETLIEIERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKD---------AEG 404
Query: 507 DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 566
+ + ++HWV +LF + P L P +V +
Sbjct: 405 LITSDWTKENIIHWVKA--------------VARLFGVKGP--------KLFPPLRVALT 442
Query: 567 EAYAEPSLHSAAV--GDRFQFERLGYFAVD 594
Y EP L G QFERLGY D
Sbjct: 443 GGYVEPELADTIELLGKEVQFERLGYALAD 472
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 310 bits (795), Expect = 3e-96
Identities = 169/512 (33%), Positives = 278/512 (54%), Gaps = 38/512 (7%)
Query: 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
G V TRFPPEP+GYLHIGHAKA ++ A+ G +R+DDTNP E E++++I +
Sbjct: 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKD 271
Query: 155 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 214
++ +G + +TYTSDYF +L E+A +LI+ G AYVD E++++ R + S R+
Sbjct: 272 IETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNS 331
Query: 215 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 274
+ E+L+L+++M G + +R K DMQ+ N ++ D + YR TPH G K+ +YP
Sbjct: 332 VEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYP 391
Query: 275 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 334
+YD+A VD++E +TH+L + E+ R A Y+ +L +GL + ++WE+SRLN T++SK
Sbjct: 392 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSK 451
Query: 335 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI---GISRSDSLIRLDRL 391
RKL + V N V+GWDDP T+ G+ RRG+ I A Q I G S++ +L+ D+L
Sbjct: 452 RKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLK---IEALKQFILSQGASKNLNLMEWDKL 508
Query: 392 EYHIREELNKTAPRTMVVLNPLKVVITNMESG-----TIMHLDAKRWPDAQADDASAFYK 446
++ ++ PR VL +V++T + G + K++ A A+
Sbjct: 509 WTINKKIIDPVCPRHTAVLKEGRVLLT-LTDGPETPFVRIIPRHKKYEGA-GKKATT--- 563
Query: 447 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCTEVILSDDKETILHIRAE 505
F+N ++++++D ++ G+ V L+ + I + I D+ + + E
Sbjct: 564 --FTNRIWLDYADAEA--------ISEGEEVTLMDWGNAI--IKEITKDEGGAVTALSGE 611
Query: 506 YDPS---KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSK 562
K TK K L W+ + + V VE F+ L + E D++L LNP +K
Sbjct: 612 LHLEGSVKTTKLK--LTWLPDTNELVPLSLVE---FDYLITKKKLEEDDNFLDVLNPCTK 666
Query: 563 VVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 594
A + ++ + G+ Q ER GY+ D
Sbjct: 667 KETA-ALGDSNMRNLKRGEIIQLERKGYYRCD 697
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 289 bits (742), Expect = 8e-90
Identities = 186/523 (35%), Positives = 281/523 (53%), Gaps = 42/523 (8%)
Query: 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
G V+TRFPPE +G+LHIGHAKA ++ LA + G R+DDTNP EK+ + I +
Sbjct: 51 GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDD 110
Query: 155 VQWMGWEPFKI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 212
+ +G + + TY+SDY +YE A ELI++G AY D EE+++ R + + +RD
Sbjct: 111 LATLG-VSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRD 169
Query: 213 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 272
+ E+ +L+ +M+ G E + LR K + N+N M D + YR+ TPH G K+
Sbjct: 170 ISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKA 229
Query: 273 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 332
YP+YD+ I+DS+E +TH+L T E+ R Y+W ALG+ +P V ++SRLN+ +VM
Sbjct: 230 YPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVM 289
Query: 333 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 392
SKRKL LV VDGWDDP T+ L RRG+ ++ FVQ G+S++ + + +L
Sbjct: 290 SKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLW 349
Query: 393 YHIREELNKTAPRTMVVLNPLKVVIT-----NMESG-TIMHLDAKRWPDAQADDASAFYK 446
Y + L+ + PR VV N LKV T ++E+ ++H K+ PD +YK
Sbjct: 350 YFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLH---KKVPDM---GEKTYYK 403
Query: 447 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLR-----YAFPIKCT-EVILSDDKETIL 500
S+V+++ D++D L G V L Y I+ + E L D + +L
Sbjct: 404 ---SDVIFL--------DAEDVALLKEGDEVTLMDWGNAYIKNIRRSGEDALITDADIVL 452
Query: 501 HIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPD 560
H+ + KKTK K L WV E SP +E+ ++ L + P + + P
Sbjct: 453 HLEGDV---KKTKFK--LTWVPE-SP--KAEVMELNEYDHLLTKKKPDPEESIDDIIAPV 504
Query: 561 SKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLV 603
+K E Y E +L GD Q ER GY+ VD TP+K++
Sbjct: 505 TKYT-QEVYGEEALSVLKKGDIIQLERRGYYIVDDV-TPKKVL 545
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 277 bits (711), Expect = 1e-85
Identities = 132/512 (25%), Positives = 220/512 (42%), Gaps = 53/512 (10%)
Query: 92 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHI 151
G V+ RF P P+G LHIGHA+A ++ AK+ G +R+DDT+P E D I
Sbjct: 89 AKMGEVVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMI 148
Query: 152 EEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR 211
E ++W+G + ++ Y SD + Y+ +LI G AYV PEE +E R + R
Sbjct: 149 LEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEACHCR 208
Query: 212 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 271
DR + E+L+ +E+M G+ E G +R+K D+++ N + D + +RI TPHP GDK+
Sbjct: 209 DRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYR 268
Query: 272 IYPSYDYAHCIVDSIENITHSLCTLEF--ETRRASYFWLLHALGLYQPYVWEYSRLNVSN 329
+YP+ D++ I D + +TH L + R+ Y + + W +++
Sbjct: 269 VYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGRLKIDDVR 328
Query: 330 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 389
+ + ++ +Y GWDDP L TL +RRRG+ +I F+ IG+ +D +
Sbjct: 329 ALSTSSARKGILRGEYS-GWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWK 387
Query: 390 RLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPF 449
+ R+ +++ A R + NP+K+ I + + P +
Sbjct: 388 NIYALNRKIIDEEARRYFFIWNPVKIEIVGLPEPKRVER-----PLHPDHPEIGERVLIL 442
Query: 450 SNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS 509
+Y+ D + V L A + ++ L E + R
Sbjct: 443 RGEIYVPKDDLEEGV----------EPVRLMDAVNVIYSKKELRYHSEGLEGAR------ 486
Query: 510 KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 569
K K +HW+ ++V+V + PD+ +V E
Sbjct: 487 KLGKSI--IHWLPAKD----AVKVKV---------------------IMPDASIV--EGV 517
Query: 570 AEPSLHSAAVGDRFQFERLGYFAVDKDSTPEK 601
E VGD QFER G+ +D
Sbjct: 518 IEADASELEVGDVVQFERFGFARLDSADKDGM 549
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 274 bits (703), Expect = 5e-85
Identities = 164/505 (32%), Positives = 265/505 (52%), Gaps = 27/505 (5%)
Query: 95 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
G ++TRFPPEP+GYLHIGHAKA ++ A+ G LR+DDTNP EK E+ + I E
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 155 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 214
+ + +P +++TSDYF+ + A+ LI G AY+D EE+K+ R + S R++
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 215 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 274
E+L++F++M +G+ E G LR K DMQ+DN + D + +R TPH +G + YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 275 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 334
+YD A IVDSIE +TH+L T E++ R A +FW+ ALGL +P + ++R+N NTV+SK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 335 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY- 393
RKL + V N +V GWDD T+ G+ RRG+ ++ F+ G SR ++ LD ++
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR--RVVNLDWAKFW 307
Query: 394 -HIREELNKTAPRTMVV--LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 450
++E++K A R M + + + +TN + D + K P
Sbjct: 308 AENKKEIDKRAKRFMAIDKADHTALTVTNADEEA----------DFAFSETDCHPKDPGF 357
Query: 451 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK 510
+ D + + D + G+ ++L I+ +++ D E ++ +K
Sbjct: 358 GKRAMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKI--DGDLEGHFIPDGDFKAAK 415
Query: 511 KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 570
K + W+A+ S + + E F+ L E E D + +NPD+ +
Sbjct: 416 KK-----ISWIADVSDNIPVVLSE---FDNLIIKEKLEEDDKFEDFINPDTLAET-DVIG 466
Query: 571 EPSLHSAAVGDRFQFERLGYFAVDK 595
+ L + D Q ER G++ VD+
Sbjct: 467 DAGLKTLKEHDIIQLERRGFYRVDR 491
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 269 bits (689), Expect = 2e-82
Identities = 152/520 (29%), Positives = 241/520 (46%), Gaps = 61/520 (11%)
Query: 92 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYID 149
G V+ RF P P+G LH+GHA+A ++ AK GG LR++DT+P ++ E D
Sbjct: 97 AEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYD 156
Query: 150 HIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP 209
I E ++W+G + ++ SD + YE A +LI G AYV PEE KE R+ P
Sbjct: 157 MILEDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCP 216
Query: 210 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 269
RD+ E+L+L+E M +G +EG+A +R+K D+++ N ++ D +A+RI TPHP GDK
Sbjct: 217 HRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDK 276
Query: 270 WCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVWEYSRLNV 327
+ ++P+Y++A + D + +TH L + T + Y + G P Y RL +
Sbjct: 277 YRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYDYFGWEYPETIHYGRLKI 334
Query: 328 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 387
V+S K+ + GWDDP L TL LRRRG+ +I + +G+ +D+ I
Sbjct: 335 EGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATIS 394
Query: 388 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTI---MHLDAKRWPDAQADDASAF 444
+ L R+ ++ A R V +P+++ I E +H PD
Sbjct: 395 WENLYAINRKLIDPIANRYFFVRDPVELEIEGAEPLEAKIPLH------PD---RPERGE 445
Query: 445 YKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRA 504
++P VY+ D A GK V L F ++ I + +
Sbjct: 446 REIPVGGKVYVSSDDLE----------AEGKMVRLMDLFNVE----ITGVSVDKARYHSD 491
Query: 505 EYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVV 564
+ + ++K K ++ WV E V VR+ L PD +
Sbjct: 492 DLEEARKNKAP-IIQWVPEDES------VPVRV-------------------LKPDGGDI 525
Query: 565 IPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 604
E AEP + V D QFER G+ +D +++V
Sbjct: 526 --EGLAEPDVADLEVDDIVQFERFGFVRIDS-VEDDEVVA 562
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 249 bits (638), Expect = 5e-79
Identities = 93/143 (65%), Positives = 110/143 (76%)
Query: 263 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 322
H GDKWCIYP+YD+AH IVDSIE ITHSLCTLEFE RR SY+WL AL LY+P+ WE+
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 323 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382
SRLN++ TVMSKRKL LV YVDGWDDP L TL GLRRRGVT +I F+ G+S++
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 383 DSLIRLDRLEYHIREELNKTAPR 405
DS I D+LE +R++LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 191 bits (487), Expect = 7e-57
Identities = 64/106 (60%), Positives = 86/106 (81%)
Query: 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
V+TRFPPEPNGYLHIGHAKA+ ++FG AK+ GG C LR+DDTNPE E++EY+D I+E V
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 156 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 201
+W+G +P+K+TY SDYF +LYE A +LI++G AYV H+T ++ Y
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWCIY 106
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 177 bits (450), Expect = 3e-52
Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 403 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 462
APR M VL+P+KVVI N G + P + KVPFS +YIE DF+
Sbjct: 1 APRYMAVLDPVKVVIENYPEGEEEEAEVPNHPK---NPELGTRKVPFSREIYIEREDFK- 56
Query: 463 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP---SKKTKPKGVLH 519
L PG+ V L A+ IK TEV+ D+ + + YD K KG++H
Sbjct: 57 -------RLKPGEEVRLMGAYNIKVTEVV-KDEDGNVTELHCTYDGDSLGGARKVKGIIH 108
Query: 520 WVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAV 579
WV+ + + EVRL+++LF E+ D+L LNPDS VI E AEP+L + V
Sbjct: 109 WVSAD----DAVPAEVRLYDRLFKDEDD---FDFL--LNPDSLKVITEGLAEPALANLKV 159
Query: 580 GDRFQFERLGYFAVD 594
GD QFER+GYF VD
Sbjct: 160 GDIVQFERIGYFRVD 174
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 99.1 bits (247), Expect = 2e-23
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V+TRF P P GYLHIGHA+ +F A++ GG LR +DT+PE + EY++ I E ++
Sbjct: 2 VVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLK 61
Query: 157 WMG--WEPFKITYTSDYFQELYELAVELIRRG 186
W+G W+ SD F A ELI++G
Sbjct: 62 WLGLDWDE-GPYRQSDRFDLYRAYAEELIKKG 92
Score = 82.1 bits (203), Expect = 1e-17
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 272 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVS-NT 330
YP Y++ H + D++ ITH L + WL ALG P + + RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 331 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD--SLIRL 388
+SKRKLN TL LRRRG ++ ++ IG S+ D L L
Sbjct: 153 KLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196
Query: 389 DRLEYHIREELNKTAPRT 406
+ + E +A T
Sbjct: 197 EEMIAAFSVERVNSADAT 214
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 93.4 bits (233), Expect = 3e-20
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V+TRF P P GYLH+G+A+ +++ A++ GG LR DDT+ E K+EY D I E ++
Sbjct: 3 VITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLK 62
Query: 157 WMGWEPFKITYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIKEYREKKMNS----PWR 211
W+G + SD F + Y+ A E L G Y ++TPEE+ E + K S P
Sbjct: 63 WLGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEEL-ELKRKIQLSRGLPPIY 120
Query: 212 DRPIAESLKLFEDMRNGRIEEGKA 235
DR +LKL E+ + EG+
Sbjct: 121 DR---AALKLTEEEKAALEAEGRK 141
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 86.6 bits (215), Expect = 4e-19
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 263 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVW 320
HP G K+ ++P+ ++A + D + +TH L + T + Y + G P
Sbjct: 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYEYFGWEYPETI 155
Query: 321 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 380
+ RL + +S K+ + + +GWDDP L TL LRRRG+ +I F+ +G+
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215
Query: 381 RSDSLIRLDRLEYHIREELNKTAPR 405
++D+ I + L R+ ++ A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240
Score = 86.3 bits (214), Expect = 6e-19
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYIDHIEE 153
V+ RF P PNG LH+GHA+A ++ AK GG LR+DDT+P ++ E D I E
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 154 IVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 194
++W+G + ++ SD + YE A +LI G AYV +T
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYVHPRT 101
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 82.4 bits (204), Expect = 1e-16
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 97 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 156
V TRF P P GYLHIG A+ ++ AK GG LR +DT+ E +E + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLK 61
Query: 157 WMG--WE--PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 212
W+G W+ P+ + D +++ + EL+ G AY + + E ++ RE++ +
Sbjct: 62 WLGISWDEGPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLERLREEQKANKETP 118
Query: 213 RPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 271
R L + + +G +R K Q + D + I F D +
Sbjct: 119 RYDRHCRNLHNEEIENALAKGIPPVVRFKIP-QEGVVSFNDQVRGEITFQ--NSELDDFV 175
Query: 272 IY-----PSYDYAHCIVDSIENITHSL 293
I P+Y++A + D + ITH +
Sbjct: 176 ILKSDGSPTYNFAVVVDDYLMKITHVI 202
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 74.0 bits (181), Expect = 8e-14
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
NV+TRF P P G+LHIG A+ ++ A+ G LR +DT+ E KE ++ I +
Sbjct: 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGL 63
Query: 156 QWMG--WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------- 206
+W+G W ++ + S E A++L++ G AY EEI+ R++ +
Sbjct: 64 KWLGLDWNG-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFI 122
Query: 207 -NSPWRDR 213
NS WRD+
Sbjct: 123 FNSEWRDK 130
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 69.0 bits (170), Expect = 3e-12
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 96 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
V TRF P P GYLHIG A+ A+F ++ A+ GG LR +DT+ E +E + I E
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTALF-NWLFARHHGGKFILRIEDTDQERSTEEAEEAILEG 62
Query: 155 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 205
++W+G W P Y Y Q ++Y E A +L+ G AY + TPEE++ RE++
Sbjct: 63 LKWLGLDWDEGPDGGPY-GPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQ 121
Query: 206 M--------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMK 240
+ RD E R+ G +R K
Sbjct: 122 RAAGEPPRYDGRCRDLTKEEVAA--------RLAAGEPPVIRFK 157
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 61.8 bits (151), Expect = 1e-10
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 96 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
V TRF P P G+LHIG A+ ++ A++ GG LR +DT+ E E + I E +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 156 QWMGWEP 162
+W+G +
Sbjct: 61 KWLGLDW 67
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 61.4 bits (150), Expect = 2e-10
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 99 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWM 158
RF P P+G LH G A + A+ GG LR +D +P E D I ++W+
Sbjct: 8 GRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWL 67
Query: 159 G--WEPFKITYTSDYFQELYELAVE-LIRRGHAY 189
G W+ + Y S + Y A++ L +G Y
Sbjct: 68 GLHWDG-PVLYQSQRH-DAYRAALDRLRAQGLVY 99
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 58.9 bits (143), Expect = 3e-09
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 100 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPEAEKKEYIDHIEEIV 155
RF P P G +HIG+ +A ++ +AK++ +R +DT N E + KE I EI+
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKE----ILEIL 58
Query: 156 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDR 213
G K+ Y S+ + ++A +L+ A+ + EE++ +E K P+R
Sbjct: 59 NLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYD 118
Query: 214 PIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY 273
E+L+ E + + +R+K+ +F D I + F P D + I
Sbjct: 119 GTCENLEDDEVLNCNK----PFVVRLKKPNHTMSFT--DAIKGEVSF--EPDEIDSFVIL 170
Query: 274 -----PSYDYAHCIVDSIENIT 290
P+Y++A + D + +I+
Sbjct: 171 RADKTPTYNFACAVDDMLYDIS 192
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 56.3 bits (136), Expect = 3e-08
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 91 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDH 150
E GG V RF P P G LH+G A+ ++ A+ +GG LR +DT+ KE +
Sbjct: 40 ESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEA 99
Query: 151 IEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEY 201
+ ++W+G W+ P Y Q +Y + A +L+ GH Y T EE++
Sbjct: 100 VLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159
Query: 202 RE 203
+E
Sbjct: 160 KE 161
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 46.4 bits (110), Expect = 2e-06
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 99 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE------AEKKEYIDHIE 152
RFP EP GYLHIGHAK + AK C +R DD P E +E + IE
Sbjct: 2 ARFPGEP-GYLHIGHAKLI----CRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIE 56
Query: 153 EIVQWMG 159
E + G
Sbjct: 57 EDISVCG 63
Score = 33.7 bits (77), Expect = 0.054
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 283 VDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMSKRK 336
+SIE S+C +F+ R Y W+ + L P E RLN+ TVMSKRK
Sbjct: 52 KESIEED-ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 45.5 bits (108), Expect = 9e-06
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 99 TRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTN-------------P 140
T PNGYLHIGH + + LA+ C DD
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENA 61
Query: 141 EAEKKEYIDHIEEIVQWM 158
+A + +I+ I+E V++M
Sbjct: 62 KAFVERWIERIKEDVEYM 79
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 43.7 bits (104), Expect = 2e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 100 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG 159
RF P P+G LH G A + A+ GG +R +D +P E D I ++ G
Sbjct: 4 RFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYG 63
Query: 160 --W-EPFKITYTSDYFQELYELAVE-LIRRGHAY 189
W + Y S LY+ A++ L+ G AY
Sbjct: 64 LHWDGE--VVYQSQR-HALYQAALDRLLAAGLAY 94
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 37.0 bits (86), Expect = 0.003
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 1 MYELLGERTAADIEKLSKK-KEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPP 59
+ ELLG +T AD+ K KK K+KK + K A D + F F P
Sbjct: 10 ILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEGFLGEKFHKP 69
Query: 60 EENY 63
ENY
Sbjct: 70 GENY 73
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 33.0 bits (76), Expect = 0.50
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 136 DDTNPEAEKKEYID--------HIEEIVQWMGWEPFKITYTSDYFQELYELAVE 181
+ PE K +D E+ +G E + +D ++LY+L VE
Sbjct: 135 AEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVE 188
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 32.8 bits (75), Expect = 0.58
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 177 ELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 230
+LAVE IR G A + + E + + S + P S E R+G +
Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDET-RDGFV 228
Query: 231 E-EGKATLRMKQD 242
E EG L +++
Sbjct: 229 EAEGAGVLVLERA 241
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 32.8 bits (75), Expect = 0.60
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 521 VAEP-SPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAA 578
V P SP NPL AEL+ WL L D VVI EAY E S +
Sbjct: 174 VVHPNSPTGNPL--------------TAAELE-WLRSLPEDILVVIDEAYFEFSQTTLV 217
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 31.8 bits (73), Expect = 0.61
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 365 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 406
+T I + IG S D+++ DR IREEL K RT
Sbjct: 98 LTLPGIAGLLTIIGYSVDDTVVIFDR----IREELRKYKGRT 135
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.5 bits (74), Expect = 0.75
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 6 GERTAADIEKLSKKKEKKEKKEKPEKDEDKK----FANDAPVQLPEEDLFPISNFPPPEE 61
GER+ ++ E K+KEK+++ +K +DED+ ++PV EE+ P P++
Sbjct: 278 GERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPV--EEEESEEPEPPPLPKK 335
>gnl|CDD|233213 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This
bacterial protein is always found with the homologous
protein-export membrane protein SecD. In numerous
lineages, this protein occurs as a SecDF fusion protein
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 246
Score = 31.9 bits (73), Expect = 0.79
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 365 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGT 424
V T++ A + IG S +D+++ DR IRE L K + + I S T
Sbjct: 149 VNLTTVAALLTIIGYSINDTVVVFDR----IRENLRKY--TRKTFTEVINLSINQTLSRT 202
Query: 425 IM 426
I
Sbjct: 203 IN 204
>gnl|CDD|191653 pfam06962, rRNA_methylase, Putative rRNA methylase. This family
contains a number of putative rRNA methylases. Note that
many family members are hypothetical proteins.
Length = 138
Score = 29.9 bits (68), Expect = 1.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 168 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 199
T + ++ VELI H +D PE +K
Sbjct: 15 TKEKLEQAGLSEVELILDSHENIDEYIPEPVK 46
>gnl|CDD|218255 pfam04769, MAT_Alpha1, Mating-type protein MAT alpha 1. This
family includes Saccharomyces cerevisiae mating type
protein alpha 1. Mat alpha 1 is a transcription
activator which activates mating-type alpha-specific
genes. MAT alpha 1 and MCM 1 bind cooperatively to PQ
elements upstream of alpha-specific genes. Alpha 1
interacts in vivo with STE12, linking expression of
alpha-specific genes to the alpha-pheromone (pfam04648)
response pathway.
Length = 200
Score = 30.5 bits (69), Expect = 1.7
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 508 PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 567
P K+ + W A+P+ + L +V + + A L+ +L+ P + P
Sbjct: 65 PQKEASNFITILWQADPNKNLWSLMAKVYSSIRDQLGKKKAPLNQFLAFACPHMGMPDPS 124
Query: 568 AYAE 571
AY E
Sbjct: 125 AYLE 128
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 31.2 bits (70), Expect = 2.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 DIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPP 58
D+ + KK +K +KKEK EK++++ V+ + L + + P
Sbjct: 191 DVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237
Score = 30.0 bits (67), Expect = 4.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 10 AADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFP------PPEENY 63
A + +K K K+KK++KEK EK + KK + P+ N PP +Y
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSSY 330
Query: 64 KVHTE 68
K+ E
Sbjct: 331 KLLAE 335
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 29.8 bits (68), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 3 ELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKK 36
LL ++ EK KK EK + K + + K E+ K
Sbjct: 61 ALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 2.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 4 LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFA 38
L G + A K +K +K+++E+ ++ + K FA
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 30.7 bits (70), Expect = 2.6
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 102 PPEPNGYLHIGHAKA-----MFVDFGLAKERGGY--CYLRYDDTN-----PEAEK----- 144
P PNG H+GH ++ + GY +L D + +AEK
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARY---LRLRGYEVFFLTGTDEHGTKIELKAEKEGITP 69
Query: 145 KEYIDHIEEIVQWMGWEPFKITY------TSDYFQEL 175
+E +D E + + ++ I++ TS +EL
Sbjct: 70 QELVDKNHEEFKEL-FKALNISFDNFIRTTSPEHKEL 105
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 3.0
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 18 KKKEKKEKKEKPEKDED 34
++EKKE++E+ E+D+D
Sbjct: 66 AEEEKKEEEEEEEEDDD 82
Score = 27.6 bits (62), Expect = 5.4
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 10 AADIEKLSKKKEKKEKKEKPEKDED 34
AA + +E+K+++E+ E+++D
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 29.7 bits (67), Expect = 3.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 7 ERTAADIEKLSK--------KKEKKEKKEKPEKDEDKK 36
+ A +IEK+ K K +KK+ K+K +KD+DKK
Sbjct: 65 KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 28.9 bits (65), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 17 SKKKEKKEKKEKPEKDEDKKFANDAP 42
SKKK+ K+K +K +K +DK D
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEK 116
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 30.0 bits (68), Expect = 4.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 101 FP-PEPNGYLHIGHAKAMF-VDFGLAKER 127
FP P NG LH+GHA ++ ++F A R
Sbjct: 51 FPYPYMNGLLHLGHAFSLSKLEFAAAYHR 79
>gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of
RNA. In addition to its role in mRNA degradation, RNase
E has also been implicated in the processing of rRNA,
and the maturation of tRNA, 10Sa RNA and the M1
precursor of RNase P. RNase E associates with PNPase (3'
to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and
enolase (glycolytic enzyme) to form the RNA
degradosome. RNase E tends to cut mRNA within
single-stranded regions that are rich in A/U
nucleotides. The N-terminal region of RNase E contains
the catalytic site. Within the conserved N-terminal
domain of RNAse E and RNase G, there is an S1-like
subdomain, which is an ancient single-stranded
RNA-binding domain. S1 domain is an RNA-binding module
originally identified in the ribosomal protein S1. The
S1 domain is required for RNA cleavage by RNase E. RNase
G is paralogous to RNase E with an N-terminal catalytic
domain that is highly homologous to that of RNase E.
RNase G not only shares sequence similarity with RNase
E, but also functionally overlaps with RNase E. In
Escherichia coli, RNase G is involved in the maturation
of the 5' end of the 16S rRNA. RNase G plays a secondary
role in mRNA decay.
Length = 88
Score = 27.9 bits (63), Expect = 4.2
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 115 KAMFVDFGLAKERGGYCYLRYDDTNPEAEKK 145
+A FVD GL K +L D P KK
Sbjct: 23 QAAFVDIGLGKN----GFLHLSDILPAYFKK 49
>gnl|CDD|218457 pfam05135, Phage_connect_1, Phage gp6-like head-tail connector
protein. This family of proteins contain head-tail
connector proteins related to gp6 from bacteriophage
HK97. A structure of this protein shows similarity to
gp15 a well characterized connector component of
bacteriophage SPP1.
Length = 95
Score = 28.1 bits (63), Expect = 4.4
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 132 YLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 183
LR DD + + + I EE ++ + Y + L +LAV L+
Sbjct: 6 LLRIDDDSDDDLLELLIKAAEEYIKN--YIGRDFDYDPEEIPPLLKLAVLLL 55
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.3 bits (63), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 14 EKLSKKKEKKEKKEKPEKDEDKK 36
EK KKK+K +K +KP+K K
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 29.7 bits (66), Expect = 5.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1 MYE-LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFAND-APVQLPEEDLF 51
YE + T ++K S K+ KE +E E++ D + EED
Sbjct: 209 YYEDFFDKPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEP 261
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 5.7
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 439 DDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV----ILSD 494
DD + +P + V + H +FR+ +++ G G+ L R AF + E+ I D
Sbjct: 980 DDNRELF-IPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSR-AFRNRFLEMHFDDIPED 1037
Query: 495 DKETILHIRAEYDPS 509
+ E ILH R E PS
Sbjct: 1038 ELEEILHGRCEIAPS 1052
>gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase
(NADase). This family consists of several bacterial
nicotine adenine dinucleotide glycohydrolase (NGA)
proteins which appear to be specific to Streptococcus
pyogenes. NAD glycohydrolase (NADase) is a potential
virulence factor. Streptococcal NADase may contribute to
virulence by its ability to cleave beta-NAD at the
ribose-nicotinamide bond, depleting intracellular NAD
pools and producing the potent vasoactive compound
nicotinamide.
Length = 446
Score = 29.3 bits (65), Expect = 6.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 533 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 588
+E +FEK F D W++D D + + YA+ ++ +AV R ++ R+
Sbjct: 195 IERDIFEKKFKEIK----DKWVTDKQADEFIETADKYADKAIQMSAVASRAEYYRM 246
>gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit. DNA polymerase
III delta (holA) and delta prime (holB) subunits are
distinct proteins encoded by separate genes. The delta
prime subunit (holB) exhibits sequence homology to the
tau and gamma subunits (dnaX), but the delta subunit
(holA) does not demonstrate this same homology with
dnaX. The delta, delta prime, gamma, chi and psi
subunits form the gamma complex subassembly of DNA
polymerase III holoenzyme, which couples ATP to assemble
the ring-shaped beta subunit around DNA forming a DNA
sliding clamp [DNA metabolism, DNA replication,
recombination, and repair].
Length = 302
Score = 29.1 bits (66), Expect = 6.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 533 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVI 565
VE+R E ++ L+++L++ PD+ ++I
Sbjct: 50 VELRNPEGKPGAKGLKALEEYLANPPPDTLLLI 82
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.0 bits (65), Expect = 8.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 5 LGERTAADIEKLSKKKEKK-EKKEKPEKDEDKK 36
E E K+KE+ E KEK +KDE KK
Sbjct: 402 AKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 28.4 bits (64), Expect = 9.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 138 TNPEAEKKEYID--------HIEEIVQWMGWEPFKITYTSDYFQELYELAVE 181
NPEA K ID EI +G E + +D ++LY+L VE
Sbjct: 138 KNPEAIHKVPIDPATGLTPYQAREIAFKLGLEGELVKQAADIIKKLYKLFVE 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,820,252
Number of extensions: 3295259
Number of successful extensions: 4812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4662
Number of HSP's successfully gapped: 107
Length of query: 619
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 516
Effective length of database: 6,369,140
Effective search space: 3286476240
Effective search space used: 3286476240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)