RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007060
(619 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 865 bits (2237), Expect = 0.0
Identities = 259/552 (46%), Positives = 354/552 (64%), Gaps = 25/552 (4%)
Query: 83 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE 141
++++D+ L V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 142 AEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 200
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+E
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 201 YR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAY 256
YR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D + Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 257 RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 315
RIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251
Query: 316 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 375
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F +
Sbjct: 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 311
Query: 376 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 435
IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G + P
Sbjct: 312 RIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHP- 369
Query: 436 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 495
+VPFS ++I+ +DFR + +K Y L GK V LR A+ IK V D
Sbjct: 370 --NKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVE-KDA 426
Query: 496 KETILHIRAEYDPSKKT-------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 548
+ I I YD + K KGV+HWV+ + L VE+RL+++LF+ NP
Sbjct: 427 EGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAA----HALPVEIRLYDRLFSVPNPG 482
Query: 549 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRT 607
DD+LS +NP+S V+ + +AEPSL A G FQFER GYF +D + ST EK VFNRT
Sbjct: 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRT 541
Query: 608 VTLKDSFPKGGK 619
V L+D++ K G+
Sbjct: 542 VGLRDTWAKVGE 553
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 844 bits (2181), Expect = 0.0
Identities = 216/645 (33%), Positives = 312/645 (48%), Gaps = 69/645 (10%)
Query: 30 EKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKH 89
E+D F+ +P L P + + E++++
Sbjct: 6 EQDRGAPFSGRSPRILTRMTDAPRPTAGADAPARPPAAPLVAPN-------FITEIIERD 58
Query: 90 LEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 148
LE V+TRFPP+P+GY H+GH A +DF A++ GG LR DDTNPE ++EY+
Sbjct: 59 LEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYV 118
Query: 149 DHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM- 206
D I + ++W+G + Y SDYF Y A +LIR+G AYV+ +PEE+ R
Sbjct: 119 DSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATT 178
Query: 207 ---NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH 263
SP+RDR + E+L L M+ G +G+ LR K D+ N + D + YRI PH
Sbjct: 179 PGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPH 238
Query: 264 PHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEY 322
D+W IYP+YD+ H + D+IE +THS+C+LEF RA Y WL+ L +P+ +E+
Sbjct: 239 FRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEF 298
Query: 323 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 382
R + T+ SKRKL LV V GWDDP + TL RR GVT ++ AF IG+SR+
Sbjct: 299 GRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRT 358
Query: 383 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLD------------- 429
+ + + E +R++LN APR M VL+P+KV +TN++ + L
Sbjct: 359 NRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDG 418
Query: 430 -AKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 488
+ A VP + +YIE DF K + L PG +V LR A I+
Sbjct: 419 LVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRAD 478
Query: 489 EVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 548
+ +D+ + HIRA K GV+HWV+ L E RL+++LF +P
Sbjct: 479 DFG-TDEAGQVTHIRATLLGEDA-KAAGVIHWVSAE----RALPAEFRLYDRLFRVPHPE 532
Query: 549 ELD----------------------------DWLSDLNPDSKVVIPEAYAEPSLHSAAVG 580
+ ++ L PDS V+ Y EPS+
Sbjct: 533 GENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPAD 591
Query: 581 DRFQFERLGYFAVDK------DSTPEKLVFNRTVTLKDSFPKGGK 619
R+QFER GYF D DS + LVF R +TLKD++ K G
Sbjct: 592 TRYQFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGG 636
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 655 bits (1692), Expect = 0.0
Identities = 128/550 (23%), Positives = 209/550 (38%), Gaps = 59/550 (10%)
Query: 55 NFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHA 114
N PEE + + K + L G V+ RF P P+G LHIGHA
Sbjct: 58 NSLSPEEQQQEMERLGLEITERK---QKKRKGLRELAGVKGEVVLRFAPNPSGPLHIGHA 114
Query: 115 KAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQE 174
+A ++ A++ G LR +DT+P E D I ++W+G E + SD +
Sbjct: 115 RAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSDRMET 174
Query: 175 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGK 234
YE +LI RG AYV PEE +E + + R E+L+ + +M +EG
Sbjct: 175 YYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGS 232
Query: 235 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLC 294
A +R+K D+ + N + D ++ RI HP G ++ +YP +++ + D + +TH L
Sbjct: 233 AVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLR 292
Query: 295 TLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCL 354
+ R +L LG P Y RL + + +S + GWDDP L
Sbjct: 293 GKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRL 352
Query: 355 MTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLK 414
TL + RRG+ +I + IG+ +DS + ++ R L + A R +P+K
Sbjct: 353 GTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVK 412
Query: 415 VVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 474
+ + + + ++ PD + VY+ D
Sbjct: 413 LEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLGEGP---------- 457
Query: 475 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVE 534
+ L A + + L +E + ++HWV + L E
Sbjct: 458 --LRLIDAVNVIYSGGELR--------YHSEGIEEARELGASMIHWVPAE----SALEAE 503
Query: 535 VRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 594
V + + E V D Q ER G+ +
Sbjct: 504 VIMPDASRV-----------------------RGVIEADASELEVDDVVQLERFGFARL- 539
Query: 595 KDSTPEKLVF 604
DS +VF
Sbjct: 540 -DSAGPGMVF 548
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 82.3 bits (204), Expect = 1e-16
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 45/220 (20%)
Query: 96 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
V TRF P P G++H+G+ + A++ + A++ G LR +DT+ E +E +D I E
Sbjct: 25 PVRTRFAPSPTGFIHLGNIRSALY-PWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEG 83
Query: 155 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 205
+ W+G + P Y+Q + Y E+ ++ +G Y + + EE+ RE++
Sbjct: 84 MAWLGLDYDEGP--------YYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQ 135
Query: 206 M--------NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 257
+ WR P + G LR + D + R
Sbjct: 136 RAAGEKPRYDGTWRPEPGKVL----PEPPAGV----APVLRFRNP-LTGTVAWDDAVKGR 186
Query: 258 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 291
++ + D + P Y++ +VD ++ ITH
Sbjct: 187 VEI-SNEELDD-LVVARPDGTPMYNFC-VVVDDLDMGITH 223
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 77.6 bits (192), Expect = 8e-16
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 93 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIE 152
T + RF P P+G LH G A + A+ R G +R +D +P E + I
Sbjct: 2 TDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETIL 61
Query: 153 EIVQWMG--W--EPFKITYTSDYFQ----ELYELAVE-LIRRGHAYVDHQTPEEIKEYRE 203
++ G W + +Q + Y A+ L +G +Y T I+
Sbjct: 62 RQLEHYGLHWDGDV--------LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG 113
Query: 204 KKMNSPWRDRPIAES-----LKL------FEDMRNGRIE 231
+ R ++ F D G I
Sbjct: 114 -IYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIH 151
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 77.6 bits (192), Expect = 3e-15
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 50/225 (22%)
Query: 97 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
V R P P G LHIG A+ A+F ++ A+ RGG LR +DT+ E + EY ++I E +
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVF-NWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60
Query: 156 QWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 206
QW+G W P YFQ +LY + L+ +G AY + TPEE++ R ++
Sbjct: 61 QWLGLTWDEGP--------YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQK 112
Query: 207 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND-NFNMYDLIAY 256
++ R E + G +R K + + DL+
Sbjct: 113 AKGQAPRYDNRHRHLTPEE--------QAAFEAAGRTPVIRFKIEDDRQIEWQ--DLVRG 162
Query: 257 RIKFTPHPHAGDKWCI----------YPSYDYAHCIVDSIENITH 291
R+ + GD I YP Y+ + D IT
Sbjct: 163 RVSWQGADLGGD-MVIARAAPRGEIGYPLYNLVVVVDDIAMGITD 206
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 73.7 bits (182), Expect = 5e-14
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 37/220 (16%)
Query: 97 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
V RF P P G+LH+G A+ A+F +F A++ G LR +DT+ E ++EY + + E +
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALF-NFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 156 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 206
+W+G W+ P Y Q E+Y E A L++ G AY + PEEI+E REK +
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 207 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 257
+ ++ + R E+G + + K M ++ + D++
Sbjct: 133 SEGKAPHYSQEMFEK------FDTPERRREYEEKGLRPAVFFK--MPRKDYVLNDVVKGE 184
Query: 258 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 291
+ F GD + I P+Y++A C+VD + ITH
Sbjct: 185 VVF-KTGAIGD-FVIMRSNGLPTYNFA-CVVDDMLMEITH 221
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 73.3 bits (181), Expect = 6e-14
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 97 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 155
V+TR P P G H+G A A+F ++ A+ GG +R +DT+ + I +
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALF-NYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 156 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 206
+W+G ++ P Y Q LY + A EL++RG AY +TPEE+++ R++K
Sbjct: 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 207 --NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPH 263
+ R+ P E+ + R G +R+K + + D + + + +
Sbjct: 121 GYDGRARNIPPEEAEE--------RARRGEPHVIRLKVP-RPGTTEVKDELRGVVVY-DN 170
Query: 264 PHAGDKWCI----YPSYDYAHCIVDSIE-NITH 291
D + YP+Y A +VD +T
Sbjct: 171 QEIPDVVLLKSDGYPTYHLA-NVVDDHLMGVTD 202
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 69.1 bits (170), Expect = 1e-12
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 38/220 (17%)
Query: 96 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 154
V RF P P G H+G + A+F ++ A+ GG R +DT+ + + +E + +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALF-NWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDA 64
Query: 155 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 205
++W+G W P Y Q E+Y ++ L+ G AY TPEE++
Sbjct: 65 LRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAA 124
Query: 206 MNSP-------WRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 257
+P R A+ + EG + +R++ M +D+ DL+
Sbjct: 125 GRNPKLGYDNFDRHLTDAQRAA--------YLAEGRQPVVRLR--MPDDDLAWNDLVRGP 174
Query: 258 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 291
+ F D + + P Y D ITH
Sbjct: 175 VTF-AAGSVPD-FALTRASGDPLYTLV-NPCDDALMKITH 211
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 63.4 bits (155), Expect = 1e-10
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 55 NFPPPEENYKVHTEIPFSDGS-------VLICCNTKEVLDKHLEVTGGNVLTRFPPEPNG 107
NFP ++ + I GS + EV K + V RF P P G
Sbjct: 81 NFPEEKDGHIKVPGIHRGSGSGSGSMFITGAFFDILEVGPKKIRRCFELVRVRFAPSPTG 140
Query: 108 YLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG--WE--P 162
+LH+G A+ A+F ++ A++ GG LR +DT+ E +EY I E ++W G W+ P
Sbjct: 141 HLHVGGARTALF-NWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGP 199
Query: 163 FKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR----DR 213
Y Q E+Y E A +L+ AY E+ + P
Sbjct: 200 DIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGH 259
Query: 214 PIAESLKL------FEDMRNGRIE 231
P+ K+ FED+ G +E
Sbjct: 260 PVTIKFKVLPGKTSFEDLLKGYME 283
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 62.5 bits (153), Expect = 2e-10
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 80 CNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDT 138
+ EV K + V RF P P G+LH+G A+ A+F ++ A++ GG LR +DT
Sbjct: 9 FDILEVGPKKIRRCFELVRVRFAPSPTGHLHVGGARTALF-NWMFARKEGGKFILRIEDT 67
Query: 139 NPEAEKKEYIDHIEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAY 189
+ E +EY I E ++W G W+ P Y Q E+Y E A +L+ AY
Sbjct: 68 DTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127
Query: 190 VDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL------FEDMRNGRIE 231
E+ + P P+ K+ FED+ G +E
Sbjct: 128 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 90/646 (13%), Positives = 183/646 (28%), Gaps = 199/646 (30%)
Query: 43 VQLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFP 102
Q +D+ + +N+ ++ S+L +KE +D +
Sbjct: 14 HQYQYKDILSV-FEDAFVDNFDCK-DVQDMPKSIL----SKEEIDHIIMS---------K 58
Query: 103 PEPNGYLHI--------GHAKAMFVDFGLAKERGGYCYL----RYDDTNPEAEKKEYIDH 150
+G L + FV+ L Y +L + + P + YI+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 151 IEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN--- 207
+ + + + F + Y + R + + R+ +
Sbjct: 116 RDRL--YNDNQVF-----AKYN----------VSR---------LQPYLKLRQALLELRP 149
Query: 208 SPW-------------------RDRPIAESLKLFED----MRNGRIEEGKATLRMKQDM- 243
+ + + + + L M Q +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 244 -QND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC--IVDSIENITH----SL-C 294
Q D N+ + IK H + + S Y +C ++ +++N +L C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 295 TLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRK-LNFLVTNKYVDGWDDPC 353
+ TR L A L+ + ++ + + L+ KY+D
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEVKSLLL--KYLD------ 312
Query: 354 LMTLAGLRRRGVTSTSINAFVQG-IGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 412
L R +T N I S D L D ++ ++L ++ VL P
Sbjct: 313 -CRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 413 -------LKVVI----TNMESGTIMHLDAKRWPDAQADDA----------SAFYKVPFSN 451
++ + ++ + + + W D D S K P +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 452 VVYIEHS---DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP 508
+ I S + ++K +Y A +S++ Y P +D
Sbjct: 425 TISI-PSIYLELKVKLENEY---ALHRSIVDHYNIPKT-------------------FDS 461
Query: 509 SKKTKPK--GVLHW-------VAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLN 558
P + E + LF +F LD +L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPE-------RMTLFRMVF-------LDFRFL---- 503
Query: 559 PDSKVVIPEAYAEPSLHSAAVGDRFQ-FERLGYFAVDKDSTPEKLV 603
+ K+ + S ++ + Q + + D D E+LV
Sbjct: 504 -EQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Score = 42.1 bits (98), Expect = 5e-04
Identities = 58/374 (15%), Positives = 97/374 (25%), Gaps = 125/374 (33%)
Query: 4 LLGERTAADIEKLSKKKEKKEKKEKP----EKDEDK----KFANDAPVQLPEE--DLFP- 52
LL R + LS + DE K K+ + P LP E P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 53 --------ISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPE 104
I + +N+K H +++ L NVL E
Sbjct: 329 RLSIIAESIRDGLATWDNWK-HVNCD----------KLTTIIESSL-----NVL-----E 367
Query: 105 PNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-PEA------EKKEYIDHIEEIVQW 157
P Y + MF + + P D + +V
Sbjct: 368 PAEY------RKMFDRLSV---------FP-PSAHIPTILLSLIWFDVIKSD-VMVVVNK 410
Query: 158 M--------GWEPFKITYTSDYF------QELYELAVELIRRGHAYVDHQTPEEIKEYRE 203
+ + I+ S Y + Y L ++ Y K +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---Y------NIPKTFDS 461
Query: 204 KKMNSPWRDRPI-------------AESLKLFE----DMR--NGRIEEGKATLRMKQDMQ 244
+ P+ D+ E + LF D R +I +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 245 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRAS 304
N + L Y+ + P Y+ +V++I + L +E +
Sbjct: 522 NT---LQQLKFYKPYICDN---------DPKYER---LVNAILDF---LPKIEENLICSK 563
Query: 305 YFWLLHALGLYQPY 318
Y LL + L
Sbjct: 564 YTDLLR-IALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 93/551 (16%), Positives = 156/551 (28%), Gaps = 208/551 (37%)
Query: 44 QLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPP 103
QL E+ F P P E + E + E++ K L G V + P
Sbjct: 32 QLQEQ--F-NKILPEPTEGFAADDE----PTTPA------ELVGKFL----GYVSSLVEP 74
Query: 104 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD------------TNPEAEKKEYIDH 150
G + + +F E CYL +D + KE I +
Sbjct: 75 SKVGQFDQV--LNLCLTEF----EN---CYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 151 IEEIVQWMGWEPFKITYTS------------------------DYFQELYELAVELIRRG 186
PF S DYF+EL +L
Sbjct: 126 YITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-------- 176
Query: 187 HAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 246
Y + Y + L I+ TL
Sbjct: 177 --Y---------QTY-----------HVLVGDL----------IKFSAETLS-------- 196
Query: 247 NFNMYDLIAYRIKFTP-HPHAGD--KW----CIYPSYDY-AHCIVDSIENITHSLCTLEF 298
+LI + + +W P DY + S I + L
Sbjct: 197 -----ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIG--VIQL-- 246
Query: 299 ETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYV---DGWDD---- 351
A Y LG + P E T S+ LVT + D W+
Sbjct: 247 ----AHYVVTAKLLG-FTPG--ELRSYLKGATGHSQG----LVTAVAIAETDSWESFFVS 295
Query: 352 --PCLMTLA--GLR------RRGVTSTSINAFVQ-GIGI-----SRSDSLIRLDRLEYHI 395
+ L G+R + + + ++ G+ S S+ + ++++ ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDYV 353
Query: 396 REELNKTAPRTMVV----LN-PLKVVIT-NMES--GTIMHLDAKRWPDAQADDASAFYKV 447
+ N P V +N +V++ +S G + L + P D S ++
Sbjct: 354 -NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQS---RI 407
Query: 448 PFSN--VVYIEHSDFRMKDSKDYYGL---APGKSVLLRYAFPIKCTEVILSDDKETILHI 502
PFS + + + F L +P S LL A +++I D + +
Sbjct: 408 PFSERKLKF--SNRF----------LPVASPFHSHLLVPA-----SDLINKDLVKNNVSF 450
Query: 503 RAE------YD 507
A+ YD
Sbjct: 451 NAKDIQIPVYD 461
Score = 42.0 bits (98), Expect = 7e-04
Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 72/199 (36%)
Query: 462 MKDSKDYYGLAPG-KSVLLR--------YAFPIKCTEVILSDDKETILH--------IRA 504
M D Y + + V R Y F I ++++++ +H IR
Sbjct: 1631 M--GMDLYKTSKAAQDVWNRADNHFKDTYGFSI--LDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 505 EYD-------PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFE----KLFNSEN--PA--- 548
Y K K + + + E S F L ++ PA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY--------TFRSEKGLLSATQFTQPALTL 1738
Query: 549 -ELDDWLSDLNPDSKVVIPE--AYAEPSLHS-------AAVGDRFQFERLGYFAVDKDST 598
E + DL SK +IP +A HS A++ D E V
Sbjct: 1739 MEKAAF-EDLK--SKGLIPADATFAG---HSLGEYAALASLADVMSIES----LV----- 1783
Query: 599 PEKLVFNRTVTLKDSFPKG 617
++VF R +T++ + P+
Sbjct: 1784 --EVVFYRGMTMQVAVPRD 1800
Score = 35.0 bits (80), Expect = 0.083
Identities = 60/373 (16%), Positives = 113/373 (30%), Gaps = 138/373 (36%)
Query: 7 ERTAADIEKLSKKKEKKEKK-----------EKPEKDEDKKFANDAPVQLPEEDLFPISN 55
+ +A + +L + EK E P DK + P+ P + +++
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 56 FPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK 115
+ ++ L T G + + G GH++
Sbjct: 249 Y--------------------VVTAKL-------LGFTPGELRSYL----KGAT--GHSQ 275
Query: 116 AMFV-----------DFGLAKER--------GGYCYLRYDDTN-PEAEKKEYIDHIEEIV 155
+ F ++ + G CY Y +T+ P + ++ +++ E +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 156 QWM----GWEPFK----ITYTSDYFQE-----------------------LYELAVELIR 184
M + + T+ + LY L + L R
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-R 394
Query: 185 RGHA--YVD-HQTPEEIKEYREKKMNSPWRDRPIAE---SLKLFEDMRNGRIEEGKATLR 238
+ A +D + P + E+K+ R P+A S L A+
Sbjct: 395 KAKAPSGLDQSRIP-----FSERKLKFSNRFLPVASPFHS-HLLVP----------ASDL 438
Query: 239 MKQDMQNDN--FNMYDLIAYRIKFTP--HPHAGDKWCIYPSYDYAHCIVDSI-------E 287
+ +D+ +N FN D+ +I P G + S + IVD I E
Sbjct: 439 INKDLVKNNVSFNAKDI---QI---PVYDTFDGSDLRVL-SGSISERIVDCIIRLPVKWE 491
Query: 288 NITHSLCT--LEF 298
T T L+F
Sbjct: 492 TTTQFKATHILDF 504
Score = 31.6 bits (71), Expect = 1.2
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 63/197 (31%)
Query: 273 YPSYDYAHCIVDSIENITHSLCTLEFE---------TRRASYFWLLHALGLYQPYVWEYS 323
Y + A + + +N H T F +F + + YS
Sbjct: 1636 YKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYS 1689
Query: 324 RLNVSNTVMSKRKLNFL------VTNKYVDGWDD----------PCLMT-----LAGLRR 362
+ V K K + + Y + P L L+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 363 RGVTSTSINAFVQG--IG-----ISRSDSL-----IRLDRLEYHIREELNKTA-PRT--- 406
+G+ +A G +G S +D + + + R + A PR
Sbjct: 1750 KGLIPA--DATFAGHSLGEYAALASLADVMSIESLVEV----VFYRGMTMQVAVPRDELG 1803
Query: 407 -----MVVLNPLKVVIT 418
M+ +NP +V +
Sbjct: 1804 RSNYGMIAINPGRVAAS 1820
Score = 29.2 bits (65), Expect = 5.1
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 41/124 (33%)
Query: 497 ETILHIRAEYDPSKKTKPKG--VLHWVAEPS--PGVN---------PL---------RVE 534
ET+ + ++K +G +L W+ PS P + PL V
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 535 VRLFEKLFNSENPAELDDWLSDLNPDSK-----VVIPEAYAEPSLHSAA---------VG 580
+L P EL +L S+ V I E + S + +G
Sbjct: 253 AKLLGF-----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 581 DRFQ 584
R
Sbjct: 308 VRCY 311
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.036
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 6 GERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEE 61
+ D + K+KK+K +K K + P +P DL+P FP +E
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD--PPSVPICDLYPNGVFPKGQE 134
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.039
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 193 QTPEEIKEYRE-------------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 239
Q PE I+++RE K M WR++ + L+ + ++ ++E+ K R+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRI 140
Query: 240 KQ 241
Sbjct: 141 AD 142
Score = 30.9 bits (69), Expect = 0.90
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 20/63 (31%)
Query: 3 ELLGERTAADIEKLSKKKEK------------KEKKEKPEK---DEDKKFANDAPVQLPE 47
+ L E AA + +EK E+ EK + DK F P+
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ-----PD 150
Query: 48 EDL 50
D+
Sbjct: 151 ADI 153
Score = 27.8 bits (61), Expect = 7.9
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 7 ERTAADIEKLSKKKEKKEK--KEKPEKDEDKK 36
+R + E + K +E++ K +E + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVME 109
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 31.4 bits (71), Expect = 0.83
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 107 GYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN--PEAEKKEYIDHIEEIVQWMGWEPFK 164
G + + + G Y Y P+A KE +D I+ V+ +G +
Sbjct: 296 GLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGID--H 353
Query: 165 ITYTSDYFQ-----------ELYELAVELIRRGHAYVDHQTPEEIK 199
+ +SD+ E+ + ELI RG+ + +I
Sbjct: 354 VGISSDFNDGGGVDGWKDVSEIRNVTAELITRGY------SDADIA 393
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 546 NPAELDDWLSDL-NPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 604
NP ++ DL N ++V+PE + + V + + + F
Sbjct: 91 NPLKIKGL-KDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQN-FRNNIVAF 148
Query: 605 NRTVT 609
Sbjct: 149 VPNSG 153
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 29.8 bits (68), Expect = 2.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 546 NPAELDDWLSDLNPDSKVVIPEAYAE 571
++ W++ ++ ++ EAYAE
Sbjct: 159 PADVIEPWIASKPANTMFIVDEAYAE 184
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 29.6 bits (66), Expect = 3.3
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 13/112 (11%)
Query: 84 EVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYL--------RY 135
+ LD + + P + + + L +
Sbjct: 72 KFLDDVEAKKPTFIFIQK--YPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLN 129
Query: 136 DDTNPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRR 185
+ K D ++ I+ G+ K I YF ++Y + +
Sbjct: 130 REATINEASKMSNDLMKYILA-FGFNEDKTFIYTDYQYFGKMYRTISLVEKA 180
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 128 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 184
CY+R+ DT + ++ +++ D +E IV+ + + ++ +S + +L + +
Sbjct: 54 AQICYIRHTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLF 113
Query: 185 RGHAYVDHQTPEEIKE 200
+I E
Sbjct: 114 ALAEAELKTYSPDIVE 129
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 29.2 bits (65), Expect = 3.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 377 IGISRSDSLIRLDRLE-YHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAK 431
I ++ S + +D + T+PR + L+ K +T + I ++ K
Sbjct: 58 IVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 29.6 bits (66), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 102 PPEPNGYLHIGHA 114
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 128 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 184
G CY+R+ DT + ++ +++ D +VQ G + + S + +EL + +
Sbjct: 57 GNLCYIRHSVDTTDAFYKEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLF 116
Query: 185 RGHAYVDHQTPEEI 198
+E+
Sbjct: 117 ALAECDLKTYSDEV 130
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 29.5 bits (66), Expect = 4.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 102 PPEPNGYLHIGHA 114
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.5 bits (63), Expect = 7.1
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 123 LAKERGGYCYL--RYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAV 180
+A G C R + +N + + KE +D IE+++ + YT+ + + + +
Sbjct: 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDH----YTNGLYSLI-QRSK 226
Query: 181 ELIRRGHAYVDHQTPEEIKEYREKK 205
V IK ++
Sbjct: 227 CGPVGSDERVKEFKQSLIKYMETQR 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 7.1
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 200 EYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 244
E + KK+ + SLKL+ D + A L +K M+
Sbjct: 18 EKQALKKLQA---------SLKLYAD------DSAPA-LAIKATME 47
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 28.7 bits (65), Expect = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 102 PPEPNGYLHIGHA 114
PP NG LH+GHA
Sbjct: 56 PPYANGNLHMGHA 68
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 28.5 bits (64), Expect = 8.4
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 9 TAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNF 56
T +++L + ++ + F ++P + FPI
Sbjct: 172 TGFGVDELKNLIITTLNNAEIIRNTESYF------KMPLDHAFPIKGA 213
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.4 bits (63), Expect = 9.1
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 165 ITYTSDYFQELYELA------VELIRRGHAYVDHQTPEEIKEYREKKMNSP 209
TY DY Q L ++ + + H E I +R+ S
Sbjct: 369 YTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate
binding protein, calcium, lactate, trap transporter,
transport protein; 1.40A {Thermus thermophilus} PDB:
2zzw_A 2zzx_A
Length = 361
Score = 28.2 bits (63), Expect = 9.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 416 VITNMESGTIMHLDAKRWPDAQADDASAFYKV 447
V +E G I DA + + F++V
Sbjct: 203 VYPALERGVI---DAADFVGPAVNYNLGFHQV 231
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 27.9 bits (63), Expect = 9.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 546 NPAELDDWLSDLNPDSKVVIPEAYAE 571
+ +E +++ +N D VVI AY E
Sbjct: 171 DASEATEFIKGVNEDCLVVIDAAYNE 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,002,032
Number of extensions: 630071
Number of successful extensions: 1907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1839
Number of HSP's successfully gapped: 71
Length of query: 619
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 520
Effective length of database: 3,937,614
Effective search space: 2047559280
Effective search space used: 2047559280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)