BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007061
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 91 VHAGFLRLFFSIYDS--PSFQTQMMEIIQKSKSIVITGHSIRAXXXXXXXXXXXXXXQKS 148
VHAGFL + + + P Q Q+ + +++TGHS+ +
Sbjct: 108 VHAGFLSSYEQVVNDYFPVVQEQLTA--HPTYKVIVTGHSLGGAQALLAGMDLYQREPRL 165
Query: 149 NSPSLPILCITFGSPLLGNASLSRAILRERWDGNFCHVVSKHDIMPRLLFVPPLHF 204
+ +L I T G P +GN + + + E F V K DI+P VPP F
Sbjct: 166 SPKNLSIF--TVGGPRVGNPTFAYYV--ESTGIPFQRTVHKRDIVPH---VPPQSF 214
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 91 VHAGFLRLFFSIYDSPSFQTQMMEIIQKSKSIVITGHSIRAXXXXXXXXXXXXXXQKSNS 150
VH+GF + I + + S +V GHS+
Sbjct: 107 VHSGFQNAWNEISAAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLRIG------ 160
Query: 151 PSLPILCITFGSPLLGNASLSRAILRERWDGNFCHVVSKHDIMPRLLFVPPLHF 204
P+ T+GSP +GN L+ A + + G F V + D +PRL PPL F
Sbjct: 161 -GTPLDIYTYGSPRVGNTQLA-AFVSNQAGGEF-RVTNAKDPVPRL---PPLIF 208
>pdb|3A64|A Chain A, Crystal Structure Of Cccel6c, A Glycoside Hydrolase Family
6 Enzyme, From Coprinopsis Cinerea
pdb|3A9B|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With Cellobiose
pdb|3ABX|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With P-Nitrophenyl Beta-D-Cellotrioside
Length = 395
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 PVSTAAKDCLKMARRMGRTPNLNVADLAIKLSMINPYRAQ-----IEWYKA 399
P + K+ L +AR++ TPN V LAI +S NPY+ + EW A
Sbjct: 207 PSAEIFKETLDLARQI--TPNATVRGLAINVSNYNPYKTRAREDYTEWNNA 255
>pdb|3VOF|A Chain A, Cellobiohydrolase Mutant, Cccel6c D102a, In The Closed
Form
Length = 395
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 PVSTAAKDCLKMARRMGRTPNLNVADLAIKLSMINPYRAQ-----IEWYKA 399
P + K+ L +AR++ TPN V LAI +S NPY+ + EW A
Sbjct: 207 PSAEIFKETLDLARQI--TPNATVRGLAINVSNYNPYKTRAREDYTEWNNA 255
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 149 NSPSLPILCITFGSPLLG-NASLSRAILRER---------WDGNFCHVVSKHDI------ 192
+SP L + FG+ +L L+RA LRER W N H + +
Sbjct: 43 DSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAE 102
Query: 193 --MPRLLFVPPLHFINQLKFLLNFWHLSMTSPQFQTLATQLNNEEKAEIFRSVM 244
P LFV PL N+L L + + SPQ Q + + E + +M
Sbjct: 103 QTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIM 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,404,044
Number of Sequences: 62578
Number of extensions: 682150
Number of successful extensions: 1265
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 9
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)