Your job contains 1 sequence.
>007065
MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTH
GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQ
QNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS
VSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGV
ANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMV
NGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAP
AAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQP
VFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGAS
MGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQP
LSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYEL
LFKYDKIYFSSYICSMPDA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007065
(619 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031200 - symbol:PFT1 "PHYTOCHROME AND FLOWERI... 1725 1.2e-177 1
UNIPROTKB|F1N3D4 - symbol:MED25 "Mediator of RNA polymera... 153 1.2e-12 3
UNIPROTKB|A2VE44 - symbol:MED25 "Mediator of RNA polymera... 153 3.8e-12 3
UNIPROTKB|F1RHT9 - symbol:MED25 "Uncharacterized protein"... 153 4.1e-12 2
MGI|MGI:1922863 - symbol:Med25 "mediator of RNA polymeras... 153 7.7e-12 3
UNIPROTKB|Q71SY5 - symbol:MED25 "Mediator of RNA polymera... 153 1.6e-10 3
ZFIN|ZDB-GENE-040426-2850 - symbol:med25 "mediator of RNA... 178 3.1e-10 3
WB|WBGene00019435 - symbol:K06A9.1 species:6239 "Caenorha... 146 6.0e-06 1
FB|FBgn0038760 - symbol:MED25 "Mediator complex subunit 2... 114 1.3e-05 2
POMBASE|SPAPB1E7.04c - symbol:SPAPB1E7.04c "chitinase (pr... 137 2.9e-05 1
RGD|1305137 - symbol:Med25 "mediator complex subunit 25" ... 128 0.00011 1
ZFIN|ZDB-GENE-080618-2 - symbol:prdm1b "PR domain contain... 124 0.00025 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00026 1
CGD|CAL0006203 - symbol:orf19.4906 species:5476 "Candida ... 91 0.00034 2
UNIPROTKB|Q5APQ2 - symbol:CaO19.4906 "Putative uncharacte... 91 0.00034 2
DICTYBASE|DDB_G0287399 - symbol:DDB_G0287399 species:4468... 122 0.00035 1
POMBASE|SPBC215.13 - symbol:SPBC215.13 "sequence orphan" ... 122 0.00041 1
DICTYBASE|DDB_G0286967 - symbol:med25 "putative mediator ... 110 0.00043 3
DICTYBASE|DDB_G0271670 - symbol:DDB_G0271670 species:4468... 119 0.00049 1
UNIPROTKB|F1RGR9 - symbol:F1RGR9 "Uncharacterized protein... 121 0.00067 1
WB|WBGene00019146 - symbol:H02F09.3 species:6239 "Caenorh... 124 0.00075 1
MGI|MGI:97231 - symbol:Muc1 "mucin 1, transmembrane" spec... 120 0.00085 1
POMBASE|SPAPB15E9.01c - symbol:SPAPB15E9.01c "sequence or... 122 0.00096 1
>TAIR|locus:2031200 [details] [associations]
symbol:PFT1 "PHYTOCHROME AND FLOWERING TIME 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0010114 "response to red light" evidence=IMP]
[GO:0010218 "response to far red light" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=IMP]
[GO:0031349 "positive regulation of defense response" evidence=IMP]
[GO:0050832 "defense response to fungus" evidence=IMP] [GO:0009911
"positive regulation of flower development" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002035 SMART:SM00327
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0045893 EMBL:AC079281
GO:GO:0050832 GO:GO:0003677 GO:GO:0006351 GO:GO:0010218
GO:GO:0010114 GO:GO:0003713 GO:GO:0009911 GO:GO:0009585
GO:GO:0009908 GO:GO:0009867 GO:GO:0016592 GO:GO:0031349
EMBL:AY170377 IPI:IPI00520489 IPI:IPI00846807 PIR:G86385
RefSeq:NP_001077596.1 RefSeq:NP_173925.3 UniGene:At.17319
ProteinModelPortal:Q7XYY2 IntAct:Q7XYY2 STRING:Q7XYY2 PaxDb:Q7XYY2
PRIDE:Q7XYY2 EnsemblPlants:AT1G25540.1 GeneID:839141
KEGG:ath:AT1G25540 TAIR:At1g25540 eggNOG:NOG146385
InParanoid:Q7XYY2 KO:K15168 OMA:PLNQMQQ PhylomeDB:Q7XYY2
ProtClustDB:CLSN2680217 Genevestigator:Q7XYY2 InterPro:IPR021419
Pfam:PF11265 Uniprot:Q7XYY2
Length = 836
Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
Identities = 355/594 (59%), Positives = 433/594 (72%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
KQLIV EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G++ S VELSLV FN+HGSY
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 123
CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS P+G Q Q +
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS-PPSG-QAQPSN 123
Query: 124 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 183
D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183
Query: 184 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 243
SV+CPKQLP + A+YNA K N ++AD +D +KN +LVLISENF+EA AALS NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242
Query: 244 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTS 298
Q+PVK+D +AP VTG P + S NG NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302
Query: 299 MVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLV-SGMSQPLRP 357
M P+FPHIP+V RPA+Q + +M+++ ++ P++KP+V SGM+ PLR
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362
Query: 358 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 417
P ANVN+LNNLSQ RQVM++AAL G S S+GQ+ +AMHMSNMIS+GMA+S+P
Sbjct: 363 GPPGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPP 418
Query: 418 SQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 477
SQ VFS+ Q Q Q+ G N+ S + + SN +SQPM
Sbjct: 419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474
Query: 478 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 537
GM+QG+HSG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQSG
Sbjct: 475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525
Query: 538 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLE 591
+Q L +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LE
Sbjct: 526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLE 579
>UNIPROTKB|F1N3D4 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9913 "Bos taurus" [GO:2001178 "positive
regulation of mediator complex assembly" evidence=IEA] [GO:0071158
"positive regulation of cell cycle arrest" evidence=IEA]
[GO:0048147 "negative regulation of fibroblast proliferation"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0035563
"positive regulation of chromatin binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0071158 GO:GO:0045944
GO:GO:0000122 GO:GO:0048147 InterPro:IPR021419 Pfam:PF11265
InterPro:IPR021394 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11235
GeneTree:ENSGT00520000055653 GO:GO:0035563 GO:GO:2001178
OMA:PGQMLLS EMBL:DAAA02047485 EMBL:DAAA02047486 IPI:IPI00907370
Ensembl:ENSBTAT00000043183 Uniprot:F1N3D4
Length = 743
Score = 153 (58.9 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 47/141 (33%), Positives = 66/141 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++ + YL I F A + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ WL I F GGG + IAEGLS AL +F + + ++
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMREQ 134
Query: 123 VDGQRH--CILVAASNPHPLP 141
+ GQ H C+L+ S P+ LP
Sbjct: 135 I-GQTHRVCLLICNSPPYLLP 154
Score = 97 (39.2 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 60/234 (25%), Positives = 88/234 (37%)
Query: 170 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 227
ET+ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ETLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 228 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 285
+ S PG L P Q PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAAPAGATLSTAPQQPLPPVPQQYQVP---GNLS 279
Query: 286 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 333
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQATPGVGPPYSQTQATQLPPGPPGAPKP 338
Query: 334 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 386
S S V V P G++ P +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGG 391
Score = 59 (25.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 571
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKL 399
Query: 572 --WEGSLSGQRQGQPVFI---TKL 590
W G L Q + +P + TKL
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKL 423
Score = 52 (23.4 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 490 GNHSGGQMV-QNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMS---QQAQSGMQP 540
GN S Q+ QN + +N +GLGP S TPG+ Q Q+ P
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGPR-FSPINPLQQATPGVGPPYSQTQATQLP 329
Score = 45 (20.9 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 21/68 (30%), Positives = 25/68 (36%)
Query: 466 PSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMI 525
P QP GT+ A+ GQ QG G G P G SSG
Sbjct: 586 PPQPQPQGTVGASAAAGQP--QPQGAAPAPPGAPQG---PPGAAPGPPPPGPSSG----- 635
Query: 526 PTPGMSQQ 533
P+PG + Q
Sbjct: 636 PSPGANPQ 643
Score = 38 (18.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQ 535
P+G + T P P + QQ Q
Sbjct: 252 PAGATLSTAPQQPLPPVPQQYQ 273
Score = 37 (18.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 513 GPSGVSSGTGTMIPTPGMSQQAQSGMQP 540
GP G + G P PG S G P
Sbjct: 619 GPPGAAPGP----PPPGPSSGPSPGANP 642
>UNIPROTKB|A2VE44 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 KO:K15168 InterPro:IPR021419 Pfam:PF11265
EMBL:BC133565 IPI:IPI00842024 RefSeq:NP_001075914.1
UniGene:Bt.12647 STRING:A2VE44 PRIDE:A2VE44 GeneID:533865
KEGG:bta:533865 CTD:81857 eggNOG:NOG79607 HOGENOM:HOG000113538
HOVERGEN:HBG108127 InParanoid:A2VE44 OrthoDB:EOG41JZC5
NextBio:20876176 InterPro:IPR021394 InterPro:IPR021406
InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244 Pfam:PF11235
Uniprot:A2VE44
Length = 746
Score = 153 (58.9 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 47/141 (33%), Positives = 66/141 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++ + YL I F A + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ WL I F GGG + IAEGLS AL +F + + ++
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMREQ 134
Query: 123 VDGQRH--CILVAASNPHPLP 141
+ GQ H C+L+ S P+ LP
Sbjct: 135 I-GQTHRVCLLICNSPPYLLP 154
Score = 97 (39.2 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 60/234 (25%), Positives = 88/234 (37%)
Query: 170 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 227
ET+ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ETLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 228 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 285
+ S PG L P Q PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAAPAGATLSTAPQQPLPPVPQQYQVP---GNLS 279
Query: 286 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 333
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQATPGVGPPYSQTQATQLPPGPPGAPKP 338
Query: 334 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 386
S S V V P G++ P +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGG 391
Score = 59 (25.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 571
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKL 399
Query: 572 --WEGSLSGQRQGQPVFI---TKL 590
W G L Q + +P + TKL
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKL 423
Score = 52 (23.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 490 GNHSGGQMV-QNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMS---QQAQSGMQP 540
GN S Q+ QN + +N +GLGP S TPG+ Q Q+ P
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGPR-FSPINPLQQATPGVGPPYSQTQATQLP 329
Score = 40 (19.1 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 443 QVPQNSG-LNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQ 483
Q P G + + PS P QP GT+ A+ GQ
Sbjct: 562 QAPPGLGPILEDQARPSQNLLQLRPPQPQPQGTVGASAAAGQ 603
Score = 38 (18.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQ 535
P+G + T P P + QQ Q
Sbjct: 252 PAGATLSTAPQQPLPPVPQQYQ 273
>UNIPROTKB|F1RHT9 [details] [associations]
symbol:MED25 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001178 "positive regulation of mediator complex
assembly" evidence=IEA] [GO:0071158 "positive regulation of cell
cycle arrest" evidence=IEA] [GO:0048147 "negative regulation of
fibroblast proliferation" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035563 "positive regulation of chromatin binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] GO:GO:0071158
GO:GO:0045944 GO:GO:0000122 GO:GO:0048147 KO:K15168
InterPro:IPR021419 Pfam:PF11265 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 GeneTree:ENSGT00520000055653 GO:GO:0035563
GO:GO:2001178 OMA:PGQMLLS EMBL:CU694867 RefSeq:XP_003127384.1
Ensembl:ENSSSCT00000003552 GeneID:100519902 KEGG:ssc:100519902
Uniprot:F1RHT9
Length = 746
Score = 153 (58.9 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 47/141 (33%), Positives = 66/141 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++ + YL I F A + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ WL I F GGG + IAEGLS AL +F + + ++
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMREQ 134
Query: 123 VDGQRH--CILVAASNPHPLP 141
+ GQ H C+L+ S P+ LP
Sbjct: 135 I-GQTHRVCLLICNSPPYLLP 154
Score = 94 (38.1 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 59/234 (25%), Positives = 88/234 (37%)
Query: 170 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 227
E++ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ESLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 228 FMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT-GPAPTS-IPSVNGINRPPISVGNVP 285
+ S PG L P Q PV + AP + T AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAPPSGATLSAAPQQPLPPVPQQYQVP---GNLS 279
Query: 286 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 333
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQAAPGVGPPYSQAQAPPMPSGAPGASKP 338
Query: 334 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 386
S S V V P G++ +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGG 391
Score = 62 (26.9 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 571
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGGQQSVSNKL 399
Query: 572 --WEGSLSGQRQGQPVFI---TKL 590
W G L Q + +P + TKL
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKL 423
Score = 52 (23.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 36/162 (22%), Positives = 55/162 (33%)
Query: 341 VPEVKPLVSGMSQ-PLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPM 399
+P P + +S P +P+ P + NLS A+ NA Q G P
Sbjct: 247 LPPAPPSGATLSAAPQQPLPPVPQQYQVPGNLSAAQVAAQNAVEAAKN----QKAGLGP- 301
Query: 400 AMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSN 459
S + + + + P P +S AQ Q S +++ P
Sbjct: 302 --RFSPI--NPLQQAAPGVGPPYSQAQAPPMPSGAPGASKPP-PASQPSLVSTVAPGPG- 355
Query: 460 LSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM-VQN 500
L+ ++ P GT+ G G S GGQ V N
Sbjct: 356 LAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGGQQSVSN 397
Score = 51 (23.0 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 490 GNHSGGQMV-QNGISMNQNMMSGLGP 514
GN S Q+ QN + +N +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGP 301
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 133 AASNPHPLPTPVYRPQ 148
AA P P P P+ RPQ
Sbjct: 623 AAPGPPP-PGPILRPQ 637
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 509 MSG-LGPSGVSSGTGTMIPTPGMS-QQAQS 536
M+G + P GVS + + P + QQ+ S
Sbjct: 367 MAGTVAPGGVSGPSAAQLGAPALGGQQSVS 396
>MGI|MGI:1922863 [details] [associations]
symbol:Med25 "mediator of RNA polymerase II transcription,
subunit 25 homolog (yeast)" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0035563 "positive regulation of
chromatin binding" evidence=ISO] [GO:0042974 "retinoic acid
receptor binding" evidence=ISO;IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046965 "retinoid X receptor binding"
evidence=ISO;IPI] [GO:0048147 "negative regulation of fibroblast
proliferation" evidence=ISO] [GO:0071158 "positive regulation of
cell cycle arrest" evidence=ISO] [GO:2001178 "positive regulation
of mediator complex assembly" evidence=ISO] InterPro:IPR002035
SMART:SM00327 MGI:MGI:1922863 GO:GO:0005654 GO:GO:0071158
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 Reactome:REACT_127416
GO:GO:0048147 Reactome:REACT_27166 KO:K15168 InterPro:IPR021419
Pfam:PF11265 CTD:81857 eggNOG:NOG79607 HOGENOM:HOG000113538
HOVERGEN:HBG108127 OrthoDB:EOG41JZC5 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 GeneTree:ENSGT00520000055653 ChiTaRS:MED25
GO:GO:0035563 GO:GO:2001178 EMBL:AK148368 EMBL:AK149867
EMBL:BC021333 EMBL:BC031138 EMBL:BC071206 IPI:IPI00139172
IPI:IPI00867806 IPI:IPI00867820 IPI:IPI00867831 RefSeq:NP_083641.1
UniGene:Mm.157778 ProteinModelPortal:Q8VCB2 SMR:Q8VCB2
IntAct:Q8VCB2 MINT:MINT-5210237 STRING:Q8VCB2 PhosphoSite:Q8VCB2
PaxDb:Q8VCB2 PRIDE:Q8VCB2 Ensembl:ENSMUST00000003049 GeneID:75613
KEGG:mmu:75613 UCSC:uc009grm.1 UCSC:uc009grn.1 UCSC:uc009grs.1
InParanoid:Q8VCB2 OMA:PGQMLLS NextBio:343512 Bgee:Q8VCB2
Genevestigator:Q8VCB2 Uniprot:Q8VCB2
Length = 745
Score = 153 (58.9 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 47/141 (33%), Positives = 66/141 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++ + YL I F A + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ WL I F GGG + IAEGLS AL +F + + ++
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMREQ 134
Query: 123 VDGQRH--CILVAASNPHPLP 141
+ GQ H C+L+ S P+ LP
Sbjct: 135 I-GQTHRVCLLICNSPPYLLP 154
Score = 80 (33.2 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 41/159 (25%), Positives = 71/159 (44%)
Query: 170 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADP---PVDNSKNPHFLVLISE 226
E++ + + + S++ P++LP L ++ A P +P P D S++P +VL+
Sbjct: 167 ESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAP-PALLEPLQQPADVSQDPRHMVLVRG 225
Query: 227 NFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPA--PTSIPSVNGINRPPISVGNV 284
+ + S G +L Q V + AP ++ T A P ++P V + P GN+
Sbjct: 226 LVLPVGGS-STSG--SLQTKQ-AVPLPPAPASAATLSAAPPQALPPVPPQYQVP---GNL 278
Query: 285 PTATVK----VEPSTVTSMVNGPTFPHIPSVPRPASQGV 319
A V VE + GP F I + + A+ GV
Sbjct: 279 SAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQQ-AAPGV 316
Score = 54 (24.1 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 514 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 571
P+ S T+ P P ++ AQ G L+ V +Q AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQLGGPALGGQQSVSNKL 399
Query: 572 --WEGSLSGQRQGQPVFI---TKL 590
W G L Q + +P + TKL
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKL 423
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 34/133 (25%), Positives = 53/133 (39%)
Query: 192 PKLTAIYNAAKRNPRAADPPVDNSKNPHFLV---LISENFMEARAALSRPGVANLAPNQN 248
P A +AA P+A P + P L + ++N +EA A + G+ N
Sbjct: 251 PASAATLSAAP--PQALPPVPPQYQVPGNLSAAQVAAQNAVEA-AKSQKAGLGPRFSPIN 307
Query: 249 PVKM---DIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTF 305
P++ + P S PAP P G +PP + + P+ V P V + P
Sbjct: 308 PLQQAAPGVGPPFS-QAPAPPLAPVPPGAPKPPPA--SQPSLVSTVAPGPVLA---APAQ 361
Query: 306 PHIPSVPRPASQG 318
P PS+ + G
Sbjct: 362 PGAPSLAGTVTPG 374
Score = 47 (21.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 36/140 (25%), Positives = 55/140 (39%)
Query: 132 VAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF-VQCSVSLSVICPKQ 190
++A+ P LP PV PQ Q N + A+ +A AKS S I P Q
Sbjct: 257 LSAAPPQALP-PV-PPQYQV----PGNLSAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQ 310
Query: 191 --LPKLTAIYNAAKRNPRAADPP----VDNSKNPHFLVLISENFMEARAALSRPGVANLA 244
P + ++ A P A PP + P + ++ AA ++PG +LA
Sbjct: 311 QAAPGVGPPFSQAPAPPLAPVPPGAPKPPPASQPSLVSTVAPG--PVLAAPAQPGAPSLA 368
Query: 245 PNQNPVKMDIAPVTSVTGPA 264
P ++ + GPA
Sbjct: 369 GTVTPGGVNGPSAAQLGGPA 388
Score = 46 (21.3 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 490 GNHSGGQMV-QNGISMNQNMMSGLGP 514
GN S Q+ QN + ++ +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKSQKAGLGP 301
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 454 TSAPSN-LSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM-VQN 500
T AP L+ + P GT+ G G S G GGQ V N
Sbjct: 349 TVAPGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQLGGPALGGQQSVSN 397
>UNIPROTKB|Q71SY5 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9606 "Homo sapiens" [GO:0042974 "retinoic acid
receptor binding" evidence=IPI] [GO:0046965 "retinoid X receptor
binding" evidence=IPI] [GO:0035563 "positive regulation of
chromatin binding" evidence=IMP] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:2001178 "positive regulation of mediator complex assembly"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048147 "negative regulation of
fibroblast proliferation" evidence=IMP] [GO:0071158 "positive
regulation of cell cycle arrest" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 Reactome:REACT_111045
GO:GO:0005654 GO:GO:0071158 GO:GO:0045944 GO:GO:0000122
EMBL:CH471177 GO:GO:0048147 GO:GO:0006367 EMBL:AC006942 KO:K15168
InterPro:IPR021419 Pfam:PF11265 CTD:81857 eggNOG:NOG79607
HOVERGEN:HBG108127 InterPro:IPR021394 InterPro:IPR021406
InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244 Pfam:PF11235
EMBL:AF261072 EMBL:AJ617479 EMBL:AY533507 EMBL:AL136746
EMBL:AK289460 EMBL:BC024312 EMBL:BC065297 EMBL:AF283769
IPI:IPI00163419 IPI:IPI00418271 IPI:IPI00479592 IPI:IPI00867552
IPI:IPI00867722 RefSeq:NP_112235.2 UniGene:Hs.656639 PDB:2KY6
PDB:2L23 PDB:2L6U PDB:2XNF PDBsum:2KY6 PDBsum:2L23 PDBsum:2L6U
PDBsum:2XNF ProteinModelPortal:Q71SY5 SMR:Q71SY5 DIP:DIP-31454N
IntAct:Q71SY5 MINT:MINT-5209896 STRING:Q71SY5 PhosphoSite:Q71SY5
DMDM:158706143 PaxDb:Q71SY5 PRIDE:Q71SY5 DNASU:81857
Ensembl:ENST00000312865 GeneID:81857 KEGG:hsa:81857 UCSC:uc002ppw.2
GeneCards:GC19P050321 H-InvDB:HIX0015345 HGNC:HGNC:28845 MIM:605589
MIM:610197 neXtProt:NX_Q71SY5 Orphanet:101101 PharmGKB:PA134984839
ChiTaRS:MED25 EvolutionaryTrace:Q71SY5 GenomeRNAi:81857
NextBio:72183 ArrayExpress:Q71SY5 Bgee:Q71SY5 CleanEx:HS_MED25
Genevestigator:Q71SY5 GO:GO:0035563 GO:GO:2001178 Uniprot:Q71SY5
Length = 747
Score = 153 (58.9 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 47/141 (33%), Positives = 66/141 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++ + YL I F A + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ WL I F GGG + IAEGLS AL +F + + ++
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMREQ 134
Query: 123 VDGQRH--CILVAASNPHPLP 141
+ GQ H C+L+ S P+ LP
Sbjct: 135 I-GQTHRVCLLICNSPPYLLP 154
Score = 81 (33.6 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 39/159 (24%), Positives = 67/159 (42%)
Query: 170 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 227
E + + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ENLVQQIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPTDVSQDPRHMVLVRGL 226
Query: 228 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 285
+ S PG ++ PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGPLQ---SKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVP---GNLS 279
Query: 286 TATVKVEPSTVTSMVN-----GPTFPHIPSVPRPASQGV 319
A V + + V + N GP F I + + A+ GV
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPITPLQQ-AAPGV 316
Score = 51 (23.0 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 490 GNHSGGQMV-QNGISMNQNMMSGLGP 514
GN S Q+ QN + +N +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGP 301
Score = 50 (22.7 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 30/124 (24%), Positives = 47/124 (37%)
Query: 196 AIYNAAKRNPRAADPP-VDNSKNPHFLVLISENFMEA----RAALSRPGVANLAPNQNPV 250
A +AA + P PP N + ++N +EA +A L P + + P Q
Sbjct: 255 ATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLG-PRFSPITPLQQAA 313
Query: 251 KMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPS 310
+ P S PAP P G +PP + + P+ V P + + P P +
Sbjct: 314 P-GVGPPFS-QAPAPQLPPGPPGAPKPPPA--SQPSLVSTVAPGSGLAPTAQPGAPSMAG 369
Query: 311 VPRP 314
P
Sbjct: 370 TVAP 373
Score = 47 (21.6 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 31/141 (21%), Positives = 45/141 (31%)
Query: 341 VPEVKPLVSGMSQ-PLRPMAPAAANVNILNNLSQARQVMNNA---ALTGGTSIGLQSMGQ 396
+P P + +S P +P+ P + NLS A+ NA A +G +
Sbjct: 247 LPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPI 306
Query: 397 TPM---AMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQ-NSGLNS 452
TP+ A + S A +P P P G S
Sbjct: 307 TPLQQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPS 366
Query: 453 F--TSAPSNLSGNSNPSISQP 471
T AP +SG S + P
Sbjct: 367 MAGTVAPGGVSGPSPAQLGAP 387
Score = 46 (21.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 133 AASNPHPLPTPVYRPQ 148
AAS P P P P+ RPQ
Sbjct: 624 AASGPPP-PGPILRPQ 638
Score = 44 (20.5 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 338 GDSVPEVKPLVSGMSQPLRPMAPAAANVN 366
G S P PL S PL P AP+ A ++
Sbjct: 232 GGSAPG--PLQSKQPVPLPPAAPSGATLS 258
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 506 QNMMSGLGPSGVSSGTGTMIPTPGMSQQ---AQSGMQP 540
Q + G +G GT P PG Q A SG P
Sbjct: 593 QGTVGASGATGQPQPQGTAQPPPGAPQGPPGAASGPPP 630
>ZFIN|ZDB-GENE-040426-2850 [details] [associations]
symbol:med25 "mediator of RNA polymerase II
transcription, subunit 25 homolog (yeast)" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND] [GO:0060021
"palate development" evidence=IMP] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 PROSITE:PS50234
ZFIN:ZDB-GENE-040426-2850 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0060021 KO:K15168 InterPro:IPR021419 Pfam:PF11265 CTD:81857
eggNOG:NOG79607 HOGENOM:HOG000113538 HOVERGEN:HBG108127
OrthoDB:EOG41JZC5 InterPro:IPR021394 InterPro:IPR021397
Pfam:PF11232 Pfam:PF11235 EMBL:BC058057 IPI:IPI00496486
RefSeq:NP_999931.1 UniGene:Dr.67653 ProteinModelPortal:Q6PEH8
STRING:Q6PEH8 GeneID:406793 KEGG:dre:406793 InParanoid:Q6PEH8
NextBio:20818303 ArrayExpress:Q6PEH8 Uniprot:Q6PEH8
Length = 701
Score = 178 (67.7 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 75/279 (26%), Positives = 128/279 (45%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSAS--NVELSLVTFNTHGSY 63
++ +EGTA +GPY++S+ ++Y+ I F A + LV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRNNYILPTIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCA 74
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQN 122
VQ T F+ W+ +I F GGG + IAEGLS AL +F + + ++
Sbjct: 75 PESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFD---DFKKMREQ 131
Query: 123 VDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS 180
+ GQ H C+L+ S P+ LP E+ + + + A+++ +
Sbjct: 132 I-GQTHKVCVLLCNSPPYLLPAV---------------ESVSYTGCT-ADSLVQIIRDRG 174
Query: 181 VSLSVICPKQLPKLTAIYNAAKRN---PRAADPPVDNSKNPHFLVLISENFME-ARAALS 236
+ SVI P++LP L +++ A P ++ P D S++P +VL+ + A S
Sbjct: 175 IHFSVIAPRKLPALRSLFERASSVAGLPESSHP--DYSQDPFHMVLVRGIALPVAPGGGS 232
Query: 237 RP-GVANLAPNQN-PVKMD-IAPVTSVTGPAPTSIPSVN 272
P + + P Q+ PV + + PV S T P + +V+
Sbjct: 233 VPVSLKPVLPPQSLPVNQNPLVPVAS-TAPQMNTFQNVS 270
Score = 47 (21.6 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 346 PLVSG-MSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPM--AMH 402
P+ G + Q LR A A N + QV A GG + LQ+ G P ++
Sbjct: 568 PVTHGNVPQQLR--AAATGNQQAPVTGAPPNQVQGQAQAPGGGMLRLQNPGANPQLRSLL 625
Query: 403 MSNMISSGM 411
+S GM
Sbjct: 626 LSQQPQGGM 634
Score = 45 (20.9 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 269 PSVNGINRPP----ISVGNVP 285
P+ N +NRPP ++ GNVP
Sbjct: 555 PNQNFLNRPPGPIPVTHGNVP 575
Score = 43 (20.2 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 470 QPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGT-GTMIPTP 528
QP G +QG M M GG +Q Q GP V +G G + P
Sbjct: 629 QPQGGMQGMQGMHPIQQMVHAAPGGGAQMQP-----QWRQPHQGPLMVPTGPRGPVTQNP 683
Query: 529 GM 530
GM
Sbjct: 684 GM 685
Score = 41 (19.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 21/89 (23%), Positives = 33/89 (37%)
Query: 457 PSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQ-NGISMNQNMMSGLGPS 515
P + N N +++P G + + G + +G Q G NQ P
Sbjct: 550 PGQVQPNQN-FLNRPPGPIP--VTHGNVPQQLRAAATGNQQAPVTGAPPNQVQGQAQAPG 606
Query: 516 G-----VSSGTGTMIPTPGMSQQAQSGMQ 539
G + G + + +SQQ Q GMQ
Sbjct: 607 GGMLRLQNPGANPQLRSLLLSQQPQGGMQ 635
>WB|WBGene00019435 [details] [associations]
symbol:K06A9.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA]
GeneTree:ENSGT00700000104174 EMBL:FO081100 UniGene:Cel.5442
GeneID:180494 KEGG:cel:CELE_K06A9.1 CTD:180494 PIR:T34434
RefSeq:NP_508292.1 ProteinModelPortal:Q8IFX6 PRIDE:Q8IFX6
EnsemblMetazoa:K06A9.1b UCSC:K06A9.1b WormBase:K06A9.1b
InParanoid:Q8IFX6 OMA:TITWATP NextBio:909622 ArrayExpress:Q8IFX6
Uniprot:Q8IFX6
Length = 2232
Score = 146 (56.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 80/363 (22%), Positives = 136/363 (37%)
Query: 244 APNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGP 303
+PN + +++G + + +V+G +S G+ T+ + ST T +
Sbjct: 534 SPNPSSSPASTGSTITISGSSSIIVSTVSGST---VS-GSTGTSQSTLASSTATPG-SSS 588
Query: 304 TFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAA 363
T P S P+P+SQ S P + P A+
Sbjct: 589 TVPSSSS-PQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTAS 647
Query: 364 NV--NILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPV 421
+ + + S A +V + + + G+S+G QS +P +S +SGM S TS+P
Sbjct: 648 SPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPS-TSGM--STLTSEPS 704
Query: 422 FSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNS-----NPSISQPMGTLQ 476
SS Q Q S L S TS + SG++ +PS S +G+ Q
Sbjct: 705 PSSTQSSGAQSTLTTPSPNPSQ--STSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQ 762
Query: 477 GGASMGQSVGMSQGNHSGG-QMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQ 535
G S S + G Q + +S + +++ S ++ G+ + P +
Sbjct: 763 GSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPSTVSGST 822
Query: 536 SGMQPLSVNNNTAVNMQLSQQTSS-ALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCS 594
S ++V + A S +SS A +SQ+ GS + P T S
Sbjct: 823 SSGSTVTVGSTEASTSGSSVASSSPAPSTSQNPNPSTSSGSSMITQSPYPSQSTSPVESS 882
Query: 595 QTP 597
TP
Sbjct: 883 TTP 885
Score = 136 (52.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 72/328 (21%), Positives = 119/328 (36%)
Query: 258 TSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQ 317
TS++ +P +PS + P S + PT S V S G H S P++
Sbjct: 1250 TSLSSSSP--VPSTSQSPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSH-GSTQTPSTI 1306
Query: 318 G--VXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQAR 375
G V +T G S + SG S P ++++ + S
Sbjct: 1307 GSTVTQPSTVSGSNSSGSTVTIGSS----EASTSGSSFKTSP-----SSISPVPTSSPIP 1357
Query: 376 QVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXX 435
++ +G T + S+ T +A +SS + S+VP+S FSS
Sbjct: 1358 STTFASSTSGSTISDVSSVSTTSLAP-----LSSSLPSTVPSSTQSFSSTSEGSSKASSS 1412
Query: 436 XXXXXXXQVPQN--SGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVG--MSQGN 491
P N S T S +SG++ + + S G ++ G+
Sbjct: 1413 PVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGS 1472
Query: 492 HSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNM 551
S + + S Q MS S S + +P S A S +S ++ V
Sbjct: 1473 SSTSGVSTSSASSTQPQMSTSQGSSAGSTVASSTASPAASSTAPSSTGTMSSTSSGTVGS 1532
Query: 552 QLSQQTSSALHSSQS-KYVKVWEGSLSG 578
+S+ +++A SSQ+ V + S SG
Sbjct: 1533 TISESSTTASASSQTGSTVTMGSSSTSG 1560
>FB|FBgn0038760 [details] [associations]
symbol:MED25 "Mediator complex subunit 25" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0016592
"mediator complex" evidence=ISS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=IMP] [GO:0002805
"regulation of antimicrobial peptide biosynthetic process"
evidence=IMP] EMBL:AE014297 GO:GO:0007399 GO:GO:0006367
GO:GO:0002805 GO:GO:0016592 GO:GO:0001104 KO:K15168
InterPro:IPR021419 Pfam:PF11265 CTD:81857 eggNOG:NOG79607
InterPro:IPR021394 InterPro:IPR021406 Pfam:PF11232 Pfam:PF11244
EMBL:AY069370 RefSeq:NP_650854.1 UniGene:Dm.1258
ProteinModelPortal:Q9VDR1 SMR:Q9VDR1 STRING:Q9VDR1 PaxDb:Q9VDR1
PRIDE:Q9VDR1 EnsemblMetazoa:FBtr0083825 GeneID:42385
KEGG:dme:Dmel_CG12254 FlyBase:FBgn0038760
GeneTree:ENSGT00520000055653 InParanoid:Q9VDR1 OMA:HCILICN
OrthoDB:EOG4R7SRR PhylomeDB:Q9VDR1 GenomeRNAi:42385 NextBio:828534
Bgee:Q9VDR1 Uniprot:Q9VDR1
Length = 863
Score = 114 (45.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 44/200 (22%), Positives = 82/200 (41%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSL---VTFNTHGS 62
++ +EG+A G Y + ++Y+ + F + ++ + +L V + T +
Sbjct: 11 VVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAAN 70
Query: 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQ 121
+ G + + +P GGG A +AEG + A F Q
Sbjct: 71 LLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLD 130
Query: 122 NVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV 181
QRHCIL+ S P+ +PT E+ + +S E +A F + +
Sbjct: 131 QTSVQRHCILICNSPPYQMPT------------TESWKYPGKS----CEQLAALFNERKI 174
Query: 182 SLSVICPKQLPKLTAIYNAA 201
+LS+I P+++P L ++ A
Sbjct: 175 NLSIIAPRKMPVLFKLFMKA 194
Score = 73 (30.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 30/84 (35%), Positives = 37/84 (44%)
Query: 477 GGASMGQSVGMSQGNHSGGQMVQNGISMN----QNMMSGLGPSGVSSGTGTMIPTPGMSQ 532
GG G G G G M QN + MN Q M G+G GV G G +P P + Q
Sbjct: 727 GGGGPGGGPGPGPG---GMPMQQNQMQMNMMQQQRMPLGVGV-GVGVGPGG-VPNPNLQQ 781
Query: 533 QAQSGMQPLSVNNNTAVNMQLSQQ 556
Q Q + P N A+ Q +QQ
Sbjct: 782 QLQQ-VAP----NVAAMQQQQAQQ 800
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 532 QQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQP 584
QQ Q G Q VN N NM + + + + Q + +V + S + Q+QG P
Sbjct: 456 QQQQQGQQQQQVNPNAGNNMMPASNAGN-MSNPQQQQQQVGQQS-NPQQQGNP 506
Score = 58 (25.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 24/94 (25%), Positives = 35/94 (37%)
Query: 477 GGASMGQS-VGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGT-----GTMIPTPGM 530
GG G + M Q M Q + + + G+GP GV + + P
Sbjct: 733 GGPGPGPGGMPMQQNQMQMNMMQQQRMPLGVGVGVGVGPGGVPNPNLQQQLQQVAPNVAA 792
Query: 531 SQQAQSGMQ------PLSVNNNTAVNMQLSQQTS 558
QQ Q+ Q P+ NNN + L QT+
Sbjct: 793 MQQQQAQQQQQRMVRPMMSNNNPGLRQLLQHQTT 826
Score = 55 (24.4 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 27/94 (28%), Positives = 36/94 (38%)
Query: 483 QSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLS 542
Q + Q GQ Q +N N + + P+ S G M P QQ Q G Q
Sbjct: 449 QQLAQQQQQQQQGQQQQQ---VNPNAGNNMMPA---SNAGNM-SNP-QQQQQQVGQQS-- 498
Query: 543 VNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSL 576
N N Q QQ +S + + K+W G L
Sbjct: 499 -NPQQQGNPQQQQQGNSQQEQASLRE-KIWTGVL 530
>POMBASE|SPAPB1E7.04c [details] [associations]
symbol:SPAPB1E7.04c "chitinase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000324 "fungal-type
vacuole" evidence=IDA] [GO:0000920 "cytokinetic cell separation"
evidence=ISO] [GO:0004568 "chitinase activity" evidence=ISO]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0009277
"fungal-type cell wall" evidence=ISO] [GO:0009986 "cell surface"
evidence=IC] [GO:0034232 "ascospore wall chitin catabolic process"
evidence=IC] [GO:0046379 "extracellular polysaccharide metabolic
process" evidence=IC] InterPro:IPR013781 PomBase:SPAPB1E7.04c
GO:GO:0005576 GO:GO:0009986 EMBL:CU329670 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0000920
eggNOG:NOG12793 GO:GO:0009277 GO:GO:0046379 GO:GO:0000324 CAZy:GH18
GO:GO:0004568 GO:GO:0034232 KO:K01183 OrthoDB:EOG40KC7X
RefSeq:NP_594130.1 HSSP:P0A3R9 ProteinModelPortal:Q9C105
EnsemblFungi:SPAPB1E7.04c.1 GeneID:2543683 KEGG:spo:SPAPB1E7.04c
OMA:SPGHTIT NextBio:20804689 Uniprot:Q9C105
Length = 1236
Score = 137 (53.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 67/316 (21%), Positives = 130/316 (41%)
Query: 258 TSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQ 317
T++T TS+ + + ++ V T+T+ + S TS++ ++ +V +PAS
Sbjct: 387 TTITASGATSVTTTTKTDFDTVTTTIVSTSTL-ISASDSTSII---VSSYVSTVTQPAST 442
Query: 318 GVXXXXXXXXXXXXXE----MITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQ 373
V + + +S SVP + S P+ + A++ + L+ S+
Sbjct: 443 RVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSE 502
Query: 374 ARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXX 433
+++ L+G ++I S TP + +S+ ++S ++SS +S P SS+
Sbjct: 503 VVSEVSSTLLSGSSAIPSTS-SSTPSSSIISSPMTSVLSSS--SSIPT-SSSSDFSSSIT 558
Query: 434 XXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHS 493
+P ++F+S S LS S S P T +S S S + S
Sbjct: 559 TISSGISSSSIP-----STFSSVSSILSS----STSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 494 GGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQL 553
+ + IS + ++S PS S + G S S + + ++++ +
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSS 669
Query: 554 SQQTSSALHSSQSKYV 569
+SS L SS S +
Sbjct: 670 VIPSSSTLVSSSSSLI 685
>RGD|1305137 [details] [associations]
symbol:Med25 "mediator complex subunit 25" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0035563 "positive
regulation of chromatin binding" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046965 "retinoid X receptor binding"
evidence=ISO] [GO:0048147 "negative regulation of fibroblast
proliferation" evidence=ISO] [GO:0071158 "positive regulation of
cell cycle arrest" evidence=ISO] [GO:2001178 "positive regulation
of mediator complex assembly" evidence=ISO] RGD:1305137
InterPro:IPR021419 Pfam:PF11265 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 IPI:IPI00950269 Ensembl:ENSRNOT00000064339
UCSC:RGD:1305137 ArrayExpress:D3ZTD4 Uniprot:D3ZTD4
Length = 618
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 82/319 (25%), Positives = 132/319 (41%)
Query: 91 GGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRH--CILVAASNPHPLPTPVYRPQ 148
GGG + + IAEGLS AL +F + + ++ + GQ H C+L+ S P+ LP
Sbjct: 3 GGGESCSLIAEGLSTALQLFD---DFKKMREQI-GQTHRVCLLICNSPPYLLPAV----- 53
Query: 149 MQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--R 206
E+ S + E++ + + + S++ P++LP L ++ A
Sbjct: 54 ----------ESTTYSGCT-TESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAPPALLE 102
Query: 207 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT-GPAP 265
PP D S++P +VL+ + + S PG L P Q V + AP ++ T AP
Sbjct: 103 PLQPPADVSQDPRHMVLVRGLVLPVGGS-SAPGP--LQPKQ-AVPLPPAPTSAATLSAAP 158
Query: 266 T-SIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVN-----GPTFPHIPSVPRPASQGV 319
++P V + P GN+ A V + + V + N GP F I + + AS GV
Sbjct: 159 QQTLPPVPPQYQVP---GNLSAAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQAAS-GV 213
Query: 320 XXXXXXXXXXXXXEMITSGDSVPEV-KP-LVS------GMSQPLRPMAPAAANVNILNNL 371
P +P LVS G++ P +P AP+ A +
Sbjct: 214 GPPFSQAPAPPLAPGPPGAPKPPPASQPSLVSTVAPGPGLAAPAQPGAPSMAGTVTPGGV 273
Query: 372 SQARQV-MNNAALTGGTSI 389
S + AL G S+
Sbjct: 274 SGPSPAQLGGPALGGQQSV 292
>ZFIN|ZDB-GENE-080618-2 [details] [associations]
symbol:prdm1b "PR domain containing 1b, with ZNF
domain" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0018149 "peptide cross-linking" evidence=IEA]
InterPro:IPR003302 Pfam:PF02389 ZFIN:ZDB-GENE-080618-2
GO:GO:0005737 GeneTree:ENSGT00700000104630 GO:GO:0018149
EMBL:CU693379 IPI:IPI00961681 Ensembl:ENSDART00000109480
OMA:TISKESH Bgee:F1Q7Q5 Uniprot:F1Q7Q5
Length = 538
Score = 124 (48.7 bits), Expect = 0.00025, P = 0.00025
Identities = 94/466 (20%), Positives = 189/466 (40%)
Query: 151 NLDQNENNEAQA---ESRLSDAETVAKSFVQCSVSLSVICPKQLPKLT---AIYNAAKRN 204
+L+ E + A + ES +S E+ S + S S+ PK P + + +++ +N
Sbjct: 7 HLEHGEYSNAASLTQESYISRPESTDSSIHESS---SLFIPKS-PVFSIPESSFSSDPQN 62
Query: 205 PRAADPPVDNSKNPHFLVL-ISENFMEARAALSRPGVANLAPNQNP-VKMDIAPV---TS 259
P A+ P V +S +P I E+ + +S + P + P TS
Sbjct: 63 PTASIPQVSSSSDPQLSTSSIPESSFSSGPQISTSSIPQSTSTSVPQISTSSIPQSASTS 122
Query: 260 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 319
V+ + +S+P + ++ P I + +VP ++ +P TS++ P F S P+ + +
Sbjct: 123 VSQISTSSVPDSSSVSVPQIFISSVPQSSSSSDPQISTSLI--PEFSS-SSDPQIFTSSI 179
Query: 320 XXXXXXXXXXXXXEMI--TSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQV 377
I +S SVP++ S + Q P + +I S +
Sbjct: 180 LQSTSTSVPQISTSSIPQSSSSSVPQIS--TSSIHQSSPTSVPQMSTSSIPQGSSSSVPQ 237
Query: 378 MNNAALTGGTS-----IGLQSMGQT-PMAMHM--SNMISSGMASSVP----TSQPVFSSA 425
++ +++ +S I S+ Q+ P ++ ++ I G +SSVP +S P SS
Sbjct: 238 ISTSSIPQSSSSSVPQISTSSIPQSSPTSVPQISTSSIPQGSSSSVPQISISSIPQ-SST 296
Query: 426 QXXXXXXXXXXXXXXXXQVPQNS------GLNSFTSAPSNLSGNSNPSISQPMGTLQGGA 479
+PQ+S NS ++ + S N+N + + P + A
Sbjct: 297 NSVPHSSTPLVHESSSSYIPQSSTSTMHDSFNSDSTMTQSFSTNTNSAFNLPEDSFSHPA 356
Query: 480 SMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQ 539
++ + +H+ V+N ++ N+++ S SS T + + +S + +
Sbjct: 357 D---TISY-EDSHTTSANVRNKSFIDSNVIN----SDPSSPTTDICESDHVSSKPYVIVS 408
Query: 540 PLSVNNNTAVN-MQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQP 584
++ N ++ ++ SS+ + V V + SG R+ P
Sbjct: 409 STLCSSRIKGNRIKTDRKPSSSNTNVSESDVTVHSTADSGSREETP 454
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00026, P = 0.00026
Identities = 67/345 (19%), Positives = 120/345 (34%)
Query: 244 APNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT-VKVEPSTVTSMVN- 301
AP+ + M +P S G TS P V + + G+ + T V V+ + V+S +
Sbjct: 631 APSSS-TSMGPSPSQSTAGSTMTSAPPVTSSSSA--NTGSTSSGTTVSVQTTQVSSTTSP 687
Query: 302 -GPTFPHIPSVPRPA--SQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRP- 357
+ + S +P+ S + + S S S +QP+
Sbjct: 688 VASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG---SSSAQPIASS 744
Query: 358 --MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV 415
M A + + S + A + G+++G +MG T ++ S M ++G S
Sbjct: 745 STMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNTGSTGST 804
Query: 416 PTSQPVFSSAQXXXXXXXXXXXXX-----XXXQVPQNSGLNSFTSAPSNLSGNSNPSISQ 470
T+Q SS Q + +S T SN + +
Sbjct: 805 VTNQLASSSTYGASSTEPIASSTANPGSSTSGQTAVTTQGSSSTQTNSNTGSTGSTVTNP 864
Query: 471 PMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGM 530
P+ + G+S Q + S N ++ + + P+ S+G+ P+
Sbjct: 865 PVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQTNPNTGSTGSTVTQPSAFS 924
Query: 531 SQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGS 575
S A S QP++ + S T ++ S S GS
Sbjct: 925 STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGS 969
>CGD|CAL0006203 [details] [associations]
symbol:orf19.4906 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000082
"G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] CGD:CAL0006203
EMBL:AACQ01000001 RefSeq:XP_723588.1 GeneID:3634835
KEGG:cal:CaO19.4906 Uniprot:Q5APQ2
Length = 768
Score = 91 (37.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 62/346 (17%), Positives = 123/346 (35%)
Query: 147 PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPR 206
P ++ Q + + + ++ S + T F S S P+ ++ +
Sbjct: 43 PSSSSIQQQQTSSLMSTNQNSFSTTTTSQFTSNSSPNSAQTFSSSPENSSSRMSTPTTSI 102
Query: 207 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPV-------TS 259
+ P S + S+ +++ + P+Q+P AP TS
Sbjct: 103 STQPASTTSIQQSQSLQTSQQSQQSQQSQQSQQSQQSQPSQSPTSTSQAPSSTMSDNNTS 162
Query: 260 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 319
P+ TS+ SV+ S + +++ S VT+ + + P + +S
Sbjct: 163 FVSPSDTSL-SVSATTTSSSSTSSSSSSSTP-STSDVTTSSSASSSPS-STTSSSSSTAF 219
Query: 320 XXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMN 379
T+ S+ + S S + A++ + ++ S + +
Sbjct: 220 SSSTTETSSSATSSSSTTSSSISSTQSNTSSSSNTSFSSSTTASS-SFSSSTSSSFSP-S 277
Query: 380 NAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV-PTSQPVFSSAQXXXXXXXXXXXX 438
++ T +SI S T + SS +SSV P+S SS
Sbjct: 278 PSSTTSSSSISSTSSSFTTSS---DTSASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSS 334
Query: 439 XXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQS 484
+P +S ++S +++ S+ S +S+ S S T Q +S QS
Sbjct: 335 STTSSIPSSSEVSSTSTSASSSSSDSSTSTSSSSETDQSSSSTTQS 380
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 40/135 (29%), Positives = 58/135 (42%)
Query: 446 QNSGLNSFTSAPSNL-SGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISM 504
QNS + F S SN SG SN S S+ +G GG + G S G G ++ +NG +
Sbjct: 531 QNSKMGWFKSIFSNSGSGTSNASNSKLLGGAVGGGAAGASGGAGAGGIFR-RLDRNGDDL 589
Query: 505 NQNMMSGLGPSGVSSG-TGTMIPTPGMSQQAQSGMQPLSVNNNT---AVNMQLSQQ---- 556
+ G G +G ++ T G++ Q NNNT A N ++
Sbjct: 590 ERQAGGGYGSTGRNNNDTDNDFVYRGVTNSNNLD-QIFRSNNNTSSAARNSTIADGSAGV 648
Query: 557 ---TSSALHSSQSKY 568
T+SA H+ S Y
Sbjct: 649 TSGTNSAKHTRMSSY 663
>UNIPROTKB|Q5APQ2 [details] [associations]
symbol:CaO19.4906 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0006203 EMBL:AACQ01000001
RefSeq:XP_723588.1 GeneID:3634835 KEGG:cal:CaO19.4906
Uniprot:Q5APQ2
Length = 768
Score = 91 (37.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 62/346 (17%), Positives = 123/346 (35%)
Query: 147 PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPR 206
P ++ Q + + + ++ S + T F S S P+ ++ +
Sbjct: 43 PSSSSIQQQQTSSLMSTNQNSFSTTTTSQFTSNSSPNSAQTFSSSPENSSSRMSTPTTSI 102
Query: 207 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPV-------TS 259
+ P S + S+ +++ + P+Q+P AP TS
Sbjct: 103 STQPASTTSIQQSQSLQTSQQSQQSQQSQQSQQSQQSQPSQSPTSTSQAPSSTMSDNNTS 162
Query: 260 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 319
P+ TS+ SV+ S + +++ S VT+ + + P + +S
Sbjct: 163 FVSPSDTSL-SVSATTTSSSSTSSSSSSSTP-STSDVTTSSSASSSPS-STTSSSSSTAF 219
Query: 320 XXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMN 379
T+ S+ + S S + A++ + ++ S + +
Sbjct: 220 SSSTTETSSSATSSSSTTSSSISSTQSNTSSSSNTSFSSSTTASS-SFSSSTSSSFSP-S 277
Query: 380 NAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV-PTSQPVFSSAQXXXXXXXXXXXX 438
++ T +SI S T + SS +SSV P+S SS
Sbjct: 278 PSSTTSSSSISSTSSSFTTSS---DTSASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSS 334
Query: 439 XXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQS 484
+P +S ++S +++ S+ S +S+ S S T Q +S QS
Sbjct: 335 STTSSIPSSSEVSSTSTSASSSSSDSSTSTSSSSETDQSSSSTTQS 380
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 40/135 (29%), Positives = 58/135 (42%)
Query: 446 QNSGLNSFTSAPSNL-SGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISM 504
QNS + F S SN SG SN S S+ +G GG + G S G G ++ +NG +
Sbjct: 531 QNSKMGWFKSIFSNSGSGTSNASNSKLLGGAVGGGAAGASGGAGAGGIFR-RLDRNGDDL 589
Query: 505 NQNMMSGLGPSGVSSG-TGTMIPTPGMSQQAQSGMQPLSVNNNT---AVNMQLSQQ---- 556
+ G G +G ++ T G++ Q NNNT A N ++
Sbjct: 590 ERQAGGGYGSTGRNNNDTDNDFVYRGVTNSNNLD-QIFRSNNNTSSAARNSTIADGSAGV 648
Query: 557 ---TSSALHSSQSKY 568
T+SA H+ S Y
Sbjct: 649 TSGTNSAKHTRMSSY 663
>DICTYBASE|DDB_G0287399 [details] [associations]
symbol:DDB_G0287399 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0287399
GO:GO:0005576 EMBL:AAFI02000100 eggNOG:NOG12793 RefSeq:XP_637288.1
EnsemblProtists:DDB0187468 GeneID:8626120 KEGG:ddi:DDB_G0287399
OMA:ETINIFH Uniprot:Q54KD5
Length = 486
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 52/189 (27%), Positives = 72/189 (38%)
Query: 381 AALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXX 440
A L+ SI G P + S SG S +S + Q
Sbjct: 17 AVLSNAISIKNDG-GVNPFDNNNSGS-GSGSGSGGGSSSSGSGTGQSSGTVSSSGSASNN 74
Query: 441 XXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM--V 498
Q+ +S +S+ S+ +S S G+ G AS G S S G+ SG
Sbjct: 75 TSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSGNASSGSSSSGSSGSQSGNASSGT 134
Query: 499 QNGISMNQ-NMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT 557
+G S + + SG SG SSGT T S+ +QSG ++ T + SQ
Sbjct: 135 SSGSSSSSGSSQSGNASSGPSSGT-TSSSGSSQSESSQSGNASSGPSSGTTSSSGSSQSE 193
Query: 558 SSALHSSQS 566
SS SSQS
Sbjct: 194 SSQSESSQS 202
>POMBASE|SPBC215.13 [details] [associations]
symbol:SPBC215.13 "sequence orphan" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009986 "cell surface"
evidence=NAS] [GO:0031225 "anchored to membrane" evidence=IEA]
PomBase:SPBC215.13 GO:GO:0005783 GO:GO:0005886 GO:GO:0009986
GO:GO:0031225 EMBL:CU329671 PIR:T39903 RefSeq:NP_596690.1
ProteinModelPortal:O94317 EnsemblFungi:SPBC215.13.1 GeneID:2540669
KEGG:spo:SPBC215.13 eggNOG:opiNOG43420 OMA:NPTDVTS NextBio:20801793
Uniprot:O94317
Length = 534
Score = 122 (48.0 bits), Expect = 0.00041, P = 0.00041
Identities = 66/343 (19%), Positives = 130/343 (37%)
Query: 236 SRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVK---VE 292
S P + + + + +PV+S + PA + +PS P S P++T ++
Sbjct: 82 SEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSE-YTPSSTESSSLLD 140
Query: 293 PSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITS-GDSVPEVKPLVSGM 351
PS+V+S + P SV S + +S S P V S
Sbjct: 141 PSSVSSAI----LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSST 196
Query: 352 SQPLRPMAPAAANVNILNNLSQARQVMNNAA--LTGGT----SIGLQSMGQTPMAMHMSN 405
P + +++ ++ + +S + ++++ LT + SI S + + +S+
Sbjct: 197 FSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSS 256
Query: 406 MISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSN 465
SS ASS +S + SS+ +S ++ ++ S+ S +S+
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
Query: 466 PSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMI 525
S + ++ +S S S S + S + S S SS +
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSS 376
Query: 526 PTPG--MSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQS 566
T ++ + S +P S +++++ LS SS+ S S
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSS---SLSSHKSSSSSKSSS 416
>DICTYBASE|DDB_G0286967 [details] [associations]
symbol:med25 "putative mediator complex subunit 25"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0286967 GenomeReviews:CM000153_GR eggNOG:NOG12793
EMBL:AAFI02000092 InterPro:IPR021419 Pfam:PF11265
RefSeq:XP_637454.1 ProteinModelPortal:Q54L49
EnsemblProtists:DDB0266953 GeneID:8625854 KEGG:ddi:DDB_G0286967
OMA:QLPTNQG Uniprot:Q54L49
Length = 1553
Score = 110 (43.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 37/135 (27%), Positives = 65/135 (48%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
KQ+I ++ +A M + +I +DYL+ + + +E + N LV F + Y
Sbjct: 146 KQIIFILDSSAMMAHSFPTIQNDYLDPLA-LYLKHE-----SKNFNFTYGLVLFRDYPPY 199
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDA-AIAEGLSEALMMFSVAPNGSQNQQN 122
+ + TKD+ L ++T F GGGF+ AI+EG+ +AL + S + Q
Sbjct: 200 SDFIASSTPLTKDLKTILTLMATTKFNGGGFSTGGAISEGICKALRLASCS-------QT 252
Query: 123 VDGQRHCILVAASNP 137
+ + IL+ +NP
Sbjct: 253 IIHEECFILITNNNP 267
Score = 68 (29.0 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 72/348 (20%), Positives = 129/348 (37%)
Query: 215 SKNPHFLVLISENFMEARAALSRPGVANLAPNQNP-VKMDIAP-VTSV-TGPAPTSIPSV 271
+ N + V+I+ N A +S G N + N N ++I P +T + + P T+IP
Sbjct: 380 NNNNNASVMITNN-----ATIS--GNVNNSNNINSNTNINIQPAITQIQSNPTGTTIP-- 430
Query: 272 NGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXX 331
N + +PP+ P + ++P + S + P I S P +
Sbjct: 431 NQLPQPPL-----PPHPIIIQPHSAISNIQQPQMQQIGSPSTPLHNKINGIKYSN----- 480
Query: 332 XEMITSGDSVPEVKPLVS-GMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIG 390
+TS V P+ + G++ P P N N NNL+ NN +
Sbjct: 481 ---MTSPGIVNS--PITNNGLTSPGTPHNNKNNNNNSTNNLNNNNNNNNNNNNNNNNNNN 535
Query: 391 LQSMGQTPMAMHMSNMISSGMASSVPT----SQPVFSSAQXXXXXXXXXXXXXXXXQVPQ 446
+ +N +++ ++ S V +S Q + Q
Sbjct: 536 NNDNNNNNNNNNNNNNVNNNNINNSSNNNNGSDVVMASDQSPPPSVNQPTTSLLQQYITQ 595
Query: 447 NSGLNSFTSAP-SNLSGNSNPSISQPMGT-LQGGASMGQSVGMSQGNHSGGQMVQNGISM 504
N+ N+ + +N +G S+ SI+QP + Q + N++ M + S+
Sbjct: 596 NNNSNNINNNNINNNNGTSHHSINQPPPQPFVDNPVLSQQTN-NNNNNNNMPMPMSPHSL 654
Query: 505 NQNMMSGLGPSGVSSGTGTMIP----TPGMSQQAQSGMQ---PLSVNN 545
S + ++G +++P TP +S S Q LS NN
Sbjct: 655 TTVQKSNTPQNPFANGN-SILPNKPSTPDLSVSRASSAQLNRQLSSNN 701
Score = 45 (20.9 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 522 GTMIPTPGMSQQ--AQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYV 569
G PTP QQ A GMQP + + + QQ S+ Q +++
Sbjct: 939 GQQPPTPQQQQQHLAHIGMQPNTPQQQQNLGTGI-QQPSTPQQQLQQQHL 987
>DICTYBASE|DDB_G0271670 [details] [associations]
symbol:DDB_G0271670 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
dictyBase:DDB_G0271670 GO:GO:0005576 EMBL:AAFI02000006
ProtClustDB:CLSZ2431310 RefSeq:XP_645495.1
ProteinModelPortal:Q75JC9 EnsemblProtists:DDB0168484 GeneID:8618123
KEGG:ddi:DDB_G0271670 OMA:EITNEEP Uniprot:Q75JC9
Length = 374
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 41/205 (20%), Positives = 82/205 (40%)
Query: 362 AANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPV 421
A+ +NIL+ S + ++++ + +S S + + S+ SS +SS +S
Sbjct: 57 ASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 116
Query: 422 FSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASM 481
SS+ +S +S +S+ S+ S +S+ S S + +S
Sbjct: 117 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 176
Query: 482 GQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPL 541
S S + S + S + + S S SS + + + S + S
Sbjct: 177 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 236
Query: 542 SVNNNTAVNMQLSQQTSSALHSSQS 566
S +++++ + S +SS+ SS S
Sbjct: 237 SSSSSSSSSSSSSSSSSSSSSSSSS 261
>UNIPROTKB|F1RGR9 [details] [associations]
symbol:F1RGR9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016324 "apical plasma membrane" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] PANTHER:PTHR10006
GO:GO:0009986 GO:GO:0016324 InterPro:IPR000082 Pfam:PF01390
SMART:SM00200 PROSITE:PS50024 GeneTree:ENSGT00700000104548
InterPro:IPR023217 EMBL:CU179666 Ensembl:ENSSSCT00000007146
OMA:PVHNGTS Uniprot:F1RGR9
Length = 638
Score = 121 (47.7 bits), Expect = 0.00067, P = 0.00067
Identities = 69/284 (24%), Positives = 99/284 (34%)
Query: 266 TSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXX 325
TS P+ NG + P + + PT T T + NG + P PA+ G
Sbjct: 21 TSSPTTNGTSSPATNGTSSPT-TSPASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTS 79
Query: 326 XXXXXXXEMITSGDSVPEVK----PLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNA 381
+ +G S P P +G S P A A + N S ++
Sbjct: 80 PASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTGPASGLATTPVHNGTSSPTTNGTSS 139
Query: 382 ALTGGTS---IGLQS-MGQTPMAMHMSNMISSGMASSVP--TSQPVFSSAQXXXXXXXXX 435
T GTS G S + TP+ S+ ++G +S TS P A
Sbjct: 140 PATNGTSSPTTGPASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTGPASGLATTPVHN 199
Query: 436 XXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGG 495
P +G TS+P+ +G S+P+ G G S + G S
Sbjct: 200 GTSS-----PTTNG----TSSPAT-NGTSSPTTGPASGLATTPVHNGTSSPTTNGTSSPA 249
Query: 496 QMVQNGISM-NQNMMSGLGPSGVSSGTGTMIPTPG-MSQQAQSG 537
NG S SGL + V +GT + PT S A +G
Sbjct: 250 T---NGTSSPTTGPASGLATTPVHNGTSS--PTTNDTSSPATNG 288
>WB|WBGene00019146 [details] [associations]
symbol:H02F09.3 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104174 EMBL:FO080175 PIR:T33369
RefSeq:NP_508295.1 UniGene:Cel.27104 HSSP:P54865
ProteinModelPortal:O76602 PaxDb:O76602 EnsemblMetazoa:H02F09.3
GeneID:186667 KEGG:cel:CELE_H02F09.3 UCSC:H02F09.3 CTD:186667
WormBase:H02F09.3 InParanoid:O76602 OMA:STYLNTT NextBio:932590
Uniprot:O76602
Length = 1275
Score = 124 (48.7 bits), Expect = 0.00075, P = 0.00075
Identities = 88/441 (19%), Positives = 163/441 (36%)
Query: 145 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRN 204
+ P N D E++ ++ ++ + + K+FV S+SL+ + + Y A N
Sbjct: 153 FTPCQTNYDGIEDDIKNVQTAIN--KVITKTFVIVSLSLNST------DMNSRYGEAAHN 204
Query: 205 -PRAADPPVDNSKNPHFLVLISEN--FMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT 261
P + N N + ++ + A + V + APN V + +P T VT
Sbjct: 205 IPTTPTEDISNKINNILNIGTTQTPPVTTSTMATTTANVTSAAPNTT-VTISTSPTTVVT 263
Query: 262 GPAPTSIPSVNGINRP------PISVGNVPTATVKVEPSTVTSMVNGP-TFPHIPS---- 310
P+ S + P P +V VPT V + + VTS + P T +PS
Sbjct: 264 VPSTAQTSSTTTVTVPTTTVTGPTTVVTVPTTVVTIPSTVVTSPITTPSTVVTVPSTVVT 323
Query: 311 VPRPA--SQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNIL 368
VP A ++T ++V P V+ + P + + V +
Sbjct: 324 VPSTAVTKPSTVVTAPSTVVTVPSTVVTKPNTVVTSSPTVA--TTPTTVVTTPSTVVTVP 381
Query: 369 NNL-SQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQX 427
+ + + V+ N + + ++ T M + + + S P++ ++
Sbjct: 382 STVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVITTPTTGGSSPSTA---GTSLA 438
Query: 428 XXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGM 487
+P S S +S + +S + P T Q S ++G
Sbjct: 439 STAVTTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATSP-ATQQ---STKPTIGT 494
Query: 488 SQGNHSGGQMVQNGISMNQNMMSGLGPSG--VSSGTGTMIPTPGMSQQAQSGMQPLSVNN 545
S SG V G S ++ PSG V+ +G+ T G S QA + ++
Sbjct: 495 SMS--SGPTTVAPGASTESTVLQSSTPSGTTVTLPSGSSTATAGTSPQASTVTTVTDIS- 551
Query: 546 NTAVNMQLSQQTSSALHSSQS 566
T ++ QT+ + S++S
Sbjct: 552 -TVSGSTVTSQTAESSLSTES 571
>MGI|MGI:97231 [details] [associations]
symbol:Muc1 "mucin 1, transmembrane" species:10090 "Mus
musculus" [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000978
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding" evidence=ISO] [GO:0002039 "p53 binding" evidence=ISO]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IBA] [GO:0005886 "plasma membrane" evidence=ISO]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0006978
"DNA damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=ISO]
[GO:0009986 "cell surface" evidence=IDA] [GO:0010944 "negative
regulation of transcription by competitive promoter binding"
evidence=ISO] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016324 "apical plasma
membrane" evidence=ISO;IDA] [GO:0036003 "positive regulation of
transcription from RNA polymerase II promoter in response to
stress" evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0043618 "regulation of transcription
from RNA polymerase II promoter in response to stress"
evidence=ISO] [GO:0090240 "positive regulation of histone H4
acetylation" evidence=ISO] MGI:MGI:97231 PANTHER:PTHR10006
GO:GO:0016021 GO:GO:0005634 GO:GO:0005737 GO:GO:0009986
GO:GO:0016324 InterPro:IPR000082 Pfam:PF01390 SMART:SM00200
PROSITE:PS50024 MEROPS:S71.001 CTD:4582 eggNOG:NOG77744
GeneTree:ENSGT00700000104548 HOVERGEN:HBG003075 KO:K06568
OrthoDB:EOG4NGGNM InterPro:IPR023217 EMBL:M65132 EMBL:M64928
EMBL:M84683 EMBL:U16175 EMBL:M77226 IPI:IPI00277141 PIR:A39344
PIR:I52257 RefSeq:NP_038633.1 UniGene:Mm.16193
ProteinModelPortal:Q02496 SMR:Q02496 STRING:Q02496
PhosphoSite:Q02496 PaxDb:Q02496 PRIDE:Q02496
Ensembl:ENSMUST00000041142 GeneID:17829 KEGG:mmu:17829
UCSC:uc008pyh.1 InParanoid:Q02496 NextBio:292529 Bgee:Q02496
CleanEx:MM_MUC1 Genevestigator:Q02496 GermOnline:ENSMUSG00000042784
Uniprot:Q02496
Length = 630
Score = 120 (47.3 bits), Expect = 0.00085, P = 0.00085
Identities = 96/437 (21%), Positives = 161/437 (36%)
Query: 180 SVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPG 239
SV+ S L T +++ +P A PP D++ +P V S + RA
Sbjct: 30 SVTSSQDTSSSLASTTTPVHSSNSDP-ATRPPGDSTSSP---VQSSTSSPATRAPEDSTS 85
Query: 240 VANLAPNQNPVKMDIAPVTSVTGPAP---TSIP----SVNGINRPPISVGNVPTATVKVE 292
A L+ +P APV S + P TS P S + + P + G AT
Sbjct: 86 TAVLSGTSSPATT--APVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAATTAPV 143
Query: 293 PSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMS 352
ST + +V+G T S P ++ E TS ++SG S
Sbjct: 144 DSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTS-------TAVLSGTS 196
Query: 353 QPLR--PMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMI-SS 409
P P+ ++ V + S A + ++A + G S +P+ S+ + SS
Sbjct: 197 SPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSS 256
Query: 410 GMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSIS 469
++ T+ + S+ P +SG ++ T++ ++ + S
Sbjct: 257 ASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSS 316
Query: 470 QPMGTLQ---GGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIP 526
P T + G A + G S S ++ + S+ N S + + VS+GT +P
Sbjct: 317 MPFSTTKVTSGSAIIPDHNGSSVLPTSS--VLGSATSLVYNT-SAIATTPVSNGTQPSVP 373
Query: 527 TPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGS--LSGQRQGQP 584
+ M S ++ A + S S S+ S + V LS Q P
Sbjct: 374 S---QYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSFFFLSFYIQNHP 430
Query: 585 VFITKLEVCSQTPYELL 601
F + LE S Y+ L
Sbjct: 431 -FNSSLEDPSSNYYQEL 446
>POMBASE|SPAPB15E9.01c [details] [associations]
symbol:SPAPB15E9.01c "sequence orphan" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0009986 "cell
surface" evidence=NAS] [GO:0031225 "anchored to membrane"
evidence=IEA] GO:GO:0005886 GO:GO:0009986 EMBL:CU329670
GO:GO:0031225 eggNOG:NOG12793 EMBL:D89219 PIR:T43040
RefSeq:XP_001713096.1 EnsemblFungi:SPAPB15E9.01c.1 GeneID:5802937
KEGG:spo:SPAPB15E9.01c OMA:TNGLDNT NextBio:20892245 Uniprot:Q8TFG9
Length = 1036
Score = 122 (48.0 bits), Expect = 0.00096, P = 0.00096
Identities = 47/207 (22%), Positives = 86/207 (41%)
Query: 361 AAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQP 420
+AA+ ++ ++ S A N+ TS L S T ++ S+ SS +ASS TS
Sbjct: 79 SAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSS 138
Query: 421 VFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSA-PSNLSGNSNPSISQPMGTLQGGA 479
+ SS+ +S NS TSA P++ + +S+ S + + +
Sbjct: 139 LASSSITSSSLASSSTTSSSLA----SSSTNSTTSATPTSSATSSSLSSTAASNSATSSS 194
Query: 480 SMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQ 539
S+ + + + + + N S L S ++S T + +S S
Sbjct: 195 LASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSST- 253
Query: 540 PLSVNNNTAVNMQLSQQTSSALHSSQS 566
PL+ +N+T S +SSA +++ S
Sbjct: 254 PLTSSNSTTAATSASATSSSAQYNTSS 280
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.126 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 619 590 0.00083 120 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 615 (65 KB)
Total size of DFA: 297 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.29u 0.11s 63.40t Elapsed: 00:00:02
Total cpu time: 63.30u 0.11s 63.41t Elapsed: 00:00:02
Start: Mon May 20 21:10:17 2013 End: Mon May 20 21:10:19 2013