BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007065
(619 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25
OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
Length = 836
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/594 (62%), Positives = 453/594 (76%), Gaps = 26/594 (4%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
KQLIV EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G++ S VELSLV FN+HGSY
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 123
CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS P Q Q +
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS--PPSGQAQPSN 123
Query: 124 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 183
D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183
Query: 184 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 243
SV+CPKQLP + A+YNA K N ++AD +D +KN +LVLISENF+EA AALS NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242
Query: 244 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNG--INRPPISVGNVPTATVKVEPSTVTS 298
Q+PVK+D +AP VTG P + S NG NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302
Query: 299 MVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKP-LVSGMSQPLRP 357
M P+FPHIP+V RPA+Q +PS+QTSS S SQ+M+++ ++ P++KP +VSGM+ PLR
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362
Query: 358 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 417
P ANVN+LNNLSQ RQVM++AAL G S S+GQ+ +AMHMSNMIS+GMA+S+P
Sbjct: 363 GPPGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPP 418
Query: 418 SQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 477
SQ VFS+ Q GITS+ GSG L G++Q Q+ G N+ S + + SN +SQPM
Sbjct: 419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474
Query: 478 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 537
GM+QG+HSG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQSG
Sbjct: 475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525
Query: 538 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLE 591
+Q L +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LE
Sbjct: 526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLE 579
>sp|Q6GP15|MED25_XENLA Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
laevis GN=med25 PE=2 SV=1
Length = 801
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 33/251 (13%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++S+ YL I F + G + SLV FNT
Sbjct: 14 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 70
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 71 DCAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 126
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H CIL+ S P+ LP E+ S + E + +
Sbjct: 127 MREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIG 170
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSR 237
+ + S+I P++LP L ++ A P D S++P ++L+ + A S
Sbjct: 171 ERGIHFSIISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSV 230
Query: 238 PGVANLAPNQN 248
PGV + P Q+
Sbjct: 231 PGV--MPPKQH 239
>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
tropicalis GN=med25 PE=2 SV=1
Length = 805
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++S+ YL I F + G + SLV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 71
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 72 DCAPESYVQCHAPTSSAYEFVQWLDSIRFMGGGGESCSLIAEGLSTALQLF----DDFKK 127
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H CIL+ S P+ LP E+ S + E + +
Sbjct: 128 MREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIG 171
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSR 237
+ + SVI P++LP L ++ A P D S++P ++L+ + A S
Sbjct: 172 ERGIHFSVISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSV 231
Query: 238 PGV 240
PGV
Sbjct: 232 PGV 234
>sp|A2VE44|MED25_BOVIN Mediator of RNA polymerase II transcription subunit 25 OS=Bos
taurus GN=MED25 PE=2 SV=1
Length = 746
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 74
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H C+L+ S P+ LP E+ S + ET+ +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TETLVQKIG 174
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ A P A PP D S++P +VL+
Sbjct: 175 ERGIYFSIVSPRKLPALRLLFEKAA--PPAMLEPLQPPADVSQDPRHMVLV 223
>sp|Q8VCB2|MED25_MOUSE Mediator of RNA polymerase II transcription subunit 25 OS=Mus
musculus GN=Med25 PE=1 SV=1
Length = 745
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 35/230 (15%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 74
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H C+L+ S P+ LP E+ S + E++ +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TESLVQKIG 174
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADP---PVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ A P +P P D S++P +VL+
Sbjct: 175 ERGIHFSIVSPRKLPALRLLFEKAA-PPALLEPLQQPADVSQDPRHMVLV 223
>sp|Q71SY5|MED25_HUMAN Mediator of RNA polymerase II transcription subunit 25 OS=Homo
sapiens GN=MED25 PE=1 SV=2
Length = 747
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 37/231 (16%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 74
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H C+L+ S P+ LP E+ S + E + +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TENLVQQIG 174
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ A P A PP D S++P +VL+
Sbjct: 175 ERGIHFSIVSPRKLPALRLLFEKAA--PPALLEPLQPPTDVSQDPRHMVLV 223
>sp|Q6PEH8|MED25_DANRE Mediator of RNA polymerase II transcription subunit 25 OS=Danio
rerio GN=med25 PE=2 SV=1
Length = 701
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 44/234 (18%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++S+ ++Y+ I F + G + LV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRNNYILPTIEYFNGGPPAETDFGG---DYGGTQYGLVVFNTV 71
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ W+ +I F GGG + IAEGLS AL +F + +
Sbjct: 72 DCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLF----DDFKK 127
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H C+L+ S P+ LP A +S A S V
Sbjct: 128 MREQIGQTHKVCVLLCNSPPYLLP--------------------AVESVSYTGCTADSLV 167
Query: 178 QC----SVSLSVICPKQLPKLTAIYNAAKRN---PRAADPPVDNSKNPHFLVLI 224
Q + SVI P++LP L +++ A P ++ P D S++P +VL+
Sbjct: 168 QIIRDRGIHFSVIAPRKLPALRSLFERASSVAGLPESSHP--DYSQDPFHMVLV 219
>sp|Q9VDR1|MED25_DROME Mediator of RNA polymerase II transcription subunit 25
OS=Drosophila melanogaster GN=MED25 PE=2 SV=1
Length = 863
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 28/235 (11%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSL---VTFNTHGS 62
++ +EG+A G Y + ++Y+ + F + ++ + +L V + T +
Sbjct: 11 VVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAAN 70
Query: 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQ 121
+ G + + +P GGG A +AEG + A F Q
Sbjct: 71 LLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLD 130
Query: 122 NVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV 181
QRHCIL+ S P+ +PT E+ + +S E +A F + +
Sbjct: 131 QTSVQRHCILICNSPPYQMPT------------TESWKYPGKS----CEQLAALFNERKI 174
Query: 182 SLSVICPKQLPKLTAIYNAAKRNPRAADPPV---DNSKNPHFLVLISENFMEARA 233
+LS+I P+++P L ++ A D P+ + +KN LVL+ ++ RA
Sbjct: 175 NLSIIAPRKMPVLFKLFMKAD-----GDQPITSKNYAKNIRHLVLLKGYSLKERA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,570,267
Number of Sequences: 539616
Number of extensions: 9481649
Number of successful extensions: 32071
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1010
Number of HSP's that attempted gapping in prelim test: 28316
Number of HSP's gapped (non-prelim): 3283
length of query: 619
length of database: 191,569,459
effective HSP length: 124
effective length of query: 495
effective length of database: 124,657,075
effective search space: 61705252125
effective search space used: 61705252125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)