Query 007065
Match_columns 619
No_of_seqs 90 out of 92
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iue_A Pactolus I-domain; memb 99.6 2.5E-15 8.6E-20 146.6 16.4 171 3-197 3-182 (212)
2 3fcs_B Integrin beta-3; beta p 99.5 6.2E-13 2.1E-17 148.0 16.0 181 4-199 112-323 (690)
3 3t3p_B Integrin beta-3; integr 99.4 2.4E-12 8.2E-17 138.2 16.4 181 4-199 112-323 (472)
4 3v4v_B Integrin beta-7; cell a 99.4 5.8E-12 2E-16 136.1 17.2 179 4-198 133-341 (503)
5 3vi3_B Integrin beta-1; beta p 99.4 6.6E-12 2.3E-16 134.3 17.2 179 4-199 123-330 (454)
6 3k6s_B Integrin beta-2; cell r 99.3 4.9E-12 1.7E-16 140.9 12.2 181 4-201 105-315 (687)
7 1atz_A VON willebrand factor; 99.0 6.9E-09 2.3E-13 94.4 15.7 135 3-187 5-142 (189)
8 1ijb_A VON willebrand factor; 99.0 5.4E-09 1.8E-13 96.9 15.0 149 3-199 13-168 (202)
9 1v7p_C Integrin alpha-2; snake 99.0 8.4E-09 2.9E-13 94.8 14.5 137 3-188 6-145 (200)
10 3n2n_F Anthrax toxin receptor 99.0 3E-09 1E-13 95.2 10.8 137 3-188 7-145 (185)
11 1mf7_A Integrin alpha M; cell 98.9 3.6E-09 1.2E-13 96.4 10.9 135 3-187 5-143 (194)
12 2xgg_A Microneme protein 2; A/ 98.9 1.9E-08 6.6E-13 91.2 14.6 136 3-187 17-158 (178)
13 2b2x_A Integrin alpha-1; compu 98.9 2.8E-08 9.7E-13 93.0 13.6 138 3-187 22-160 (223)
14 3ibs_A Conserved hypothetical 98.9 6.9E-08 2.3E-12 88.8 15.9 129 3-186 11-145 (218)
15 1n3y_A Integrin alpha-X; alpha 98.8 1.8E-08 6.1E-13 91.3 10.4 134 3-186 9-146 (198)
16 1shu_X Anthrax toxin receptor 98.8 2.3E-08 8E-13 89.2 10.9 134 3-187 6-141 (182)
17 1q0p_A Complement factor B; VO 98.8 8.9E-08 3E-12 87.8 14.7 124 3-139 15-141 (223)
18 1pt6_A Integrin alpha-1; cell 98.8 6.7E-08 2.3E-12 89.6 13.5 139 3-188 7-146 (213)
19 4b4t_W RPN10, 26S proteasome r 98.7 1.6E-07 5.4E-12 94.5 14.8 149 6-204 6-164 (268)
20 4hqo_A Sporozoite surface prot 98.7 1.7E-07 5.7E-12 91.1 12.3 148 3-199 18-176 (266)
21 4hqf_A Thrombospondin-related 98.6 3E-07 1E-11 89.4 12.1 138 3-187 21-164 (281)
22 3zqk_A VON willebrand factor; 98.6 4E-07 1.4E-11 84.2 12.0 115 3-139 21-139 (199)
23 2odp_A Complement C2; C3/C5 co 98.5 8.1E-07 2.8E-11 92.4 13.3 126 2-139 8-138 (509)
24 1rrk_A Complement factor B; BB 98.5 8.9E-07 3E-11 91.4 12.9 124 3-139 1-127 (497)
25 3hrz_D Complement factor B; se 98.5 1.1E-06 3.9E-11 95.1 14.2 120 3-138 243-368 (741)
26 1mjn_A Integrin alpha-L; rossm 98.4 1.6E-06 5.5E-11 78.9 10.5 112 3-139 2-117 (179)
27 2x5n_A SPRPN10, 26S proteasome 98.3 5.2E-06 1.8E-10 78.6 13.2 147 4-202 3-160 (192)
28 3k6s_A Integrin alpha-X; cell 98.3 1.1E-06 3.6E-11 102.4 10.1 137 3-189 130-270 (1095)
29 2x31_A Magnesium-chelatase 60 98.2 7.1E-06 2.4E-10 74.1 10.5 110 3-139 5-115 (189)
30 4fx5_A VON willebrand factor t 98.1 4.9E-05 1.7E-09 80.8 16.4 105 3-138 77-192 (464)
31 3rag_A Uncharacterized protein 97.9 2.3E-05 7.8E-10 78.3 9.0 93 3-111 134-226 (242)
32 1jey_B KU80; double-strand DNA 97.8 0.00023 7.8E-09 77.1 15.8 138 4-186 8-165 (565)
33 1jey_A KU70; double-strand DNA 97.6 0.00033 1.1E-08 76.7 12.4 145 2-186 33-203 (609)
34 2ww8_A RRGA, cell WALL surface 96.8 0.0058 2E-07 70.4 12.1 117 3-139 224-392 (893)
35 1yvr_A RO autoantigen, 60-kDa 94.1 0.13 4.3E-06 55.4 8.8 98 3-137 368-472 (538)
36 1pcx_A Protein transport prote 91.0 3 0.0001 47.6 15.0 113 79-205 286-407 (810)
37 1m2v_B SEC24, protein transpor 90.4 2.8 9.6E-05 48.8 14.3 114 78-205 401-523 (926)
38 3eh1_A Protein transport prote 88.9 9.2 0.00031 43.5 16.6 178 6-206 163-372 (751)
39 2nut_A Protein transport prote 85.5 5.7 0.00019 45.1 12.4 37 169-205 335-375 (769)
40 2nvo_A RO sixty-related protei 85.2 3.6 0.00012 44.4 10.3 16 3-18 362-377 (535)
41 1m2o_A SEC23, protein transpor 81.8 9.9 0.00034 43.1 12.4 37 169-205 329-369 (768)
42 3efo_B SEC24 related gene fami 79.0 16 0.00056 41.5 13.0 182 6-205 180-396 (770)
43 3eh2_A Protein transport prote 77.3 38 0.0013 38.6 15.2 182 6-205 176-392 (766)
44 3csu_A Protein (aspartate carb 27.4 1.7E+02 0.0057 30.0 8.1 127 63-225 98-229 (310)
45 3l15_A Transcriptional enhance 23.3 24 0.00083 35.3 1.1 48 125-203 30-78 (231)
46 4a8p_A Putrescine carbamoyltra 21.5 1.6E+02 0.0053 31.0 6.7 94 62-191 95-188 (355)
47 3rag_A Uncharacterized protein 21.3 97 0.0033 30.9 4.9 38 167-204 25-70 (242)
48 4ekn_B Aspartate carbamoyltran 20.6 3.3E+02 0.011 27.7 8.8 126 63-225 96-226 (306)
No 1
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=99.64 E-value=2.5e-15 Score=146.56 Aligned_cols=171 Identities=9% Similarity=0.096 Sum_probs=126.7
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
-.||+||+|.|+||++|++.+|+. +..+++.+.. + ..++|+|++.|+|+ .|.....||+|.++|.+
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~-~~~l~~~l~~--~------~~~~r~Gfg~f~Dk-----~~~~~l~lT~d~~~F~~ 68 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTL-GSDLLKALNE--I------SRSGRIGFGSIVNM-----TFQHILKLTADSSQFQR 68 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHH-HHHHHHHHHH--H------CSCEEEEEEEESSS-----CEEEEEEEESCHHHHHH
T ss_pred ceEEEEEEeCCCcchhHHHHHHHH-HHHHHHHHHh--h------CcCceEEEEEEEcC-----cceecCCcCCCHHHHHH
Confidence 479999999999999999999977 6888888853 2 14689999999998 24456789999999999
Q ss_pred HhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCC----cccCcccc--ccccc
Q 007065 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP----VYRPQMQN--LDQNE 156 (619)
Q Consensus 83 wLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtp----VY~P~~~~--~~~ge 156 (619)
+++++..+||+|.||+..+||..|+.|.+.+ .|| +..|.+||++|++||..... .+.|.... ++.|
T Consensus 69 ~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i-~Wr------~a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g- 140 (212)
T 2iue_A 69 ELRKQLVSGKLATPKGQLDAVVQVAICLGEI-GWR------NGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDG- 140 (212)
T ss_dssp HHHTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC------SSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSS-
T ss_pred HHhhccccCCCCCCchHHHHHHHHHHhhhhc-ccC------CccEEEEEECcCCccccCCccccccccCCccccccCCC-
Confidence 9999999999999999999999999875411 112 26799999999999997542 11221110 1111
Q ss_pred hhhhh--hcccCCCHHHHHHHhhhCCcEEEEeCCC-cchHHHHH
Q 007065 157 NNEAQ--AESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAI 197 (619)
Q Consensus 157 ~~~~~--~~s~laDaEqVAk~faEk~IsLSIIsPR-klP~Lk~L 197 (619)
.|. +..+...++|+.+.+.|++|.+.+..++ ....+++|
T Consensus 141 --~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l 182 (212)
T 2iue_A 141 --MYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKL 182 (212)
T ss_dssp --BBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHH
T ss_pred --eeccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHH
Confidence 121 1235568899999999999997555444 33334443
No 2
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.45 E-value=6.2e-13 Score=148.02 Aligned_cols=181 Identities=11% Similarity=0.039 Sum_probs=126.4
Q ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC--Cccc----c-----------
Q 007065 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYCA----C----------- 66 (619)
Q Consensus 4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~--Py~e----~----------- 66 (619)
+||+|+||.|+||++||+.||+. +..+++.+.. + ..++|+|++.|+|+. ||-. .
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l-~~~l~~~l~~--~------t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~ 182 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNL-GTKLATQMRK--L------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTT-THHHHHHHHH--H------CSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSS
T ss_pred ccEEEEecCCcchHHHHHHHHHH-HHHHHHHHHh--h------CcCceEEeEEeeccccCCccccChhhhccCCCcCCCC
Confidence 79999999999999999999976 6888888754 2 246899999999976 3311 1
Q ss_pred -----ce--eeccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 67 -----LV--QRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 67 -----~V--qr~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
|. ....+|+|+.+|..+++++.++||+|.||+..+||..|+.+.+.+ .|| .+..|.+||++|+++|.
T Consensus 183 ~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~i-gWr-----~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI-GWR-----NDASHLLVFTTDAKTHI 256 (690)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC-----SSSEEEEEEEESSCBCC
T ss_pred CCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhccccc-CCC-----CCceEEEEEECCCcccc
Confidence 11 224779999999999999999999999999999999999665421 112 24679999999999995
Q ss_pred CCC----CcccCccccccccchhhhhh--cccCCCHHHHHHHhhhCCcEEEEe-CCCcchHHHHHHH
Q 007065 140 LPT----PVYRPQMQNLDQNENNEAQA--ESRLSDAETVAKSFVQCSVSLSVI-CPKQLPKLTAIYN 199 (619)
Q Consensus 140 LPt----pVY~P~~~~~~~ge~~~~~~--~s~laDaEqVAk~faEk~IsLSII-sPRklP~Lk~LFe 199 (619)
... ....|....--+...+.|.. +.+.-...||++.+.|++|.+-+. .-+.+..+++|.+
T Consensus 257 agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~ 323 (690)
T 3fcs_B 257 ALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (690)
T ss_dssp TTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHH
T ss_pred CCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHh
Confidence 443 11112111110111111111 122335899999999999996555 4444566666654
No 3
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.41 E-value=2.4e-12 Score=138.23 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=129.0
Q ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC--Cccc----------------
Q 007065 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYCA---------------- 65 (619)
Q Consensus 4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~--Py~e---------------- 65 (619)
.||+|++|.|+||++|++.||+. ...+.+.+.. + ..++|+|++.|+|++ ||-.
T Consensus 112 vDLy~LmDlS~SM~ddl~~lk~l-g~~L~~~l~~--~------t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~ 182 (472)
T 3t3p_B 112 VDIYYLMDLSYSMKDDLWSIQNL-GTKLATQMRK--L------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (472)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTH-HHHHHHHHTT--T------CSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTS
T ss_pred ceEEEEEccCcchHHHHHHHHHH-HHHHHHHHHh--c------CcCcEEEEEEeeccccCccccCChhhhhcCCCccccc
Confidence 79999999999999999999987 6888888864 2 257899999999974 3311
Q ss_pred ----ccee--eccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 66 ----CLVQ--RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 66 ----~~Vq--r~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
.|.- ...+|+|.++|..+++++..+||+|.||+..+||..|+.|-+.+ .|| .+..|.+||++|++||.
T Consensus 183 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~i-gWR-----~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI-GWR-----NDASHLLVFTTDAKTHI 256 (472)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC-----SSSEEEEEEEESSCBCC
T ss_pred CCCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhc-CCC-----CCceEEEEEECCCCcCc
Confidence 1222 24789999999999999999999999999999999998654321 112 14678999999999997
Q ss_pred CCCC----cccCccccccccchhhhhh--cccCCCHHHHHHHhhhCCcE-EEEeCCCcchHHHHHHH
Q 007065 140 LPTP----VYRPQMQNLDQNENNEAQA--ESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 199 (619)
Q Consensus 140 LPtp----VY~P~~~~~~~ge~~~~~~--~s~laDaEqVAk~faEk~Is-LSIIsPRklP~Lk~LFe 199 (619)
.... ...|.+..--+..++.|.. +-+.-...||++.+.|++|+ |+.|.-+....+++|-+
T Consensus 257 agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 323 (472)
T 3t3p_B 257 ALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (472)
T ss_dssp TTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHH
Confidence 6541 1111111100111112221 22344689999999999999 56666666666666643
No 4
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=99.38 E-value=5.8e-12 Score=136.12 Aligned_cols=179 Identities=10% Similarity=0.090 Sum_probs=128.4
Q ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC--Cccc----------------
Q 007065 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYCA---------------- 65 (619)
Q Consensus 4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~--Py~e---------------- 65 (619)
.||+|++|.|.||++|++.||+. ...+.+.+.. ...++|+|++.|+|++ ||-.
T Consensus 133 VDLyyLmDlS~SM~ddl~~lk~l-g~~L~~~l~~--------~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 133 VDLYYLMDLSYSMKDDLERVRQL-GHALLVRLQE--------VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp EEEEEEEECSGGGHHHHHHHHHS-SHHHHHHHTT--------TCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSC
T ss_pred eeEEEEEecCcchhhHHHHHHHH-HHHHHHHHHh--------hCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCC
Confidence 79999999999999999999977 5888888854 1257899999999974 3221
Q ss_pred ---ccee--eccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCC
Q 007065 66 ---CLVQ--RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPL 140 (619)
Q Consensus 66 ---~~Vq--r~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpL 140 (619)
.|.- ...+|+|.++|..+++++..+||+|.||+..+||..|+.|-+.+ .|| +..|.+||++|+++|..
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~I-gWR------~a~rllV~~TDA~fH~a 276 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQI-GWR------NVSRLLVFTSDDTFHTA 276 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC------SSEEEEEEEESSCBCCT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhccccc-CCC------cceEEEEEECCCCcCcC
Confidence 1222 34789999999999999999999999999999999998654322 122 24689999999999976
Q ss_pred CCC----cccCccccccccchhhhh--hcccCCCHHHHHHHhhhCCcE-EEEeCCCcchHHHHHH
Q 007065 141 PTP----VYRPQMQNLDQNENNEAQ--AESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIY 198 (619)
Q Consensus 141 Ptp----VY~P~~~~~~~ge~~~~~--~~s~laDaEqVAk~faEk~Is-LSIIsPRklP~Lk~LF 198 (619)
... ...|.+..--+..++.|. .+-+.-...||++.+.|++|+ ++.|.-+....+++|-
T Consensus 277 gDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L~ 341 (503)
T 3v4v_B 277 GDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELS 341 (503)
T ss_dssp TGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHHH
T ss_pred CCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEEEEEcccchhHHHHHH
Confidence 531 111211111111112222 223444689999999999998 5666777776666653
No 5
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=99.38 E-value=6.6e-12 Score=134.29 Aligned_cols=179 Identities=9% Similarity=0.060 Sum_probs=127.9
Q ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC--Ccc-----------------
Q 007065 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYC----------------- 64 (619)
Q Consensus 4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~--Py~----------------- 64 (619)
.||+|++|.|++|+++++.||+. ...+++.+.. ...++|+|++.|.|++ ||-
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~l-g~~L~~~l~~--------~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c 193 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSL-GTDLMNEMRR--------ITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNC 193 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTH-HHHHHHHHTT--------TCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCC
T ss_pred eeEEEEecCCcchhhHHHHHHHH-HHHHHHHHHh--------cCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCC
Confidence 79999999999999999999987 5888888854 1257899999999974 222
Q ss_pred --ccce-eeccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCC
Q 007065 65 --ACLV-QRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (619)
Q Consensus 65 --e~~V-qr~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLP 141 (619)
.+.. ....+|+|..+|..+++++..+||+|.||+..|||..|+.|-+.+ .|| +..|.+||++|++||...
T Consensus 194 ~~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~i-gWR------~a~rllV~~TDa~fH~ag 266 (454)
T 3vi3_B 194 TTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLI-GWR------NVTRLLVFSTDAGFHFAG 266 (454)
T ss_dssp CCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC------SSEEEEEEEESSCBCCTT
T ss_pred CCCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhcccccc-CCc------cceEEEEEECCCCcCcCC
Confidence 1211 235789999999999999999999999999999999998764322 122 267888999999999866
Q ss_pred CC----cccCccccccccchhhhhh--cccCCCHHHHHHHhhhCCcE-EEEeCCCcchHHHHHHH
Q 007065 142 TP----VYRPQMQNLDQNENNEAQA--ESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 199 (619)
Q Consensus 142 tp----VY~P~~~~~~~ge~~~~~~--~s~laDaEqVAk~faEk~Is-LSIIsPRklP~Lk~LFe 199 (619)
.. ...|.+..=-+. ++.|.. +.+.-...||++.+.|++|+ |+.|.-+..+.+++|-+
T Consensus 267 DgkL~GIv~PNDg~CHL~-~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 330 (454)
T 3vi3_B 267 DGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKN 330 (454)
T ss_dssp TTGGGTCCSCCCCCCCEE-TTEECCTTTSCCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHH
T ss_pred CccccceecCCCCccEeC-CCcccccccCCCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHH
Confidence 41 111111100001 112221 12333579999999999999 66666666666665533
No 6
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.32 E-value=4.9e-12 Score=140.91 Aligned_cols=181 Identities=8% Similarity=0.049 Sum_probs=125.8
Q ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC--Cccc----------------
Q 007065 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYCA---------------- 65 (619)
Q Consensus 4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~--Py~e---------------- 65 (619)
+||+|+||.|+||++||+.||+. +..+++.+.. + ..++|+|++.|+|+. ||-.
T Consensus 105 vDly~LmD~S~SM~ddi~~lk~l-~~~l~~~l~~--~------t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~ 175 (687)
T 3k6s_B 105 IDLYYLMDLSYSMLDDLRNVKKL-GGDLLRALNE--I------TESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKE 175 (687)
T ss_dssp CEEEEEEECSSTTHHHHHTTTTC-CTTHHHHHHS--S------CCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCC
T ss_pred eeEEEEEcCCcchHHHHHHHHHH-HHHHHHHHHh--h------CcCcEEeeEEeeccccCCccccCchhccCCCCCCCCC
Confidence 79999999999999999999976 6888888854 2 256899999999965 3221
Q ss_pred ---cce--eeccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCC
Q 007065 66 ---CLV--QRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPL 140 (619)
Q Consensus 66 ---~~V--qr~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpL 140 (619)
.|. ....+|+|+++|.++++++.++||+|.||+..+||..|+.+-+.+ .|| ...|.+||++|+++|..
T Consensus 176 c~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~i-gWr------~a~rllV~~TDa~~H~a 248 (687)
T 3k6s_B 176 CQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEI-GWR------NVTRLLVFATDDGFHFA 248 (687)
T ss_dssp CCCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHH-CCC------SSCCEEEEECSSCCCCT
T ss_pred cCCcccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhccccc-CCc------cceEEEEEECCCccccC
Confidence 111 234679999999999999999999999999999999999543221 112 26789999999999954
Q ss_pred CCC----cccCcccc--ccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe-CCCcchHHHHHHHHh
Q 007065 141 PTP----VYRPQMQN--LDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI-CPKQLPKLTAIYNAA 201 (619)
Q Consensus 141 Ptp----VY~P~~~~--~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII-sPRklP~Lk~LFeka 201 (619)
... .+.|.... |+.|.- ....+.+.-...||++.+.|++|.+-+. .-+.+..+++|.+.-
T Consensus 249 gDg~l~gi~~pndg~Chl~~~~y-~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i 315 (687)
T 3k6s_B 249 GDGKLGAILTPNDGRCHLEDNLY-KRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEII 315 (687)
T ss_dssp TGGGGGTCCCCCCSCCCCSSSBC-SSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred CCccccceecCCCCccccCCCcc-ccccccCCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence 431 11111000 011110 0011122234789999999999986554 555567777776543
No 7
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.02 E-value=6.9e-09 Score=94.37 Aligned_cols=135 Identities=13% Similarity=0.270 Sum_probs=96.9
Q ss_pred cceEEEEEecccccc-hhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccC--CcCHHH
Q 007065 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMG-pYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~Gf--TsD~~~ 79 (619)
..|||||||+++||+ ..|+.+|. ++..+++.|.-+ ....+++||.|.+.. . ..++| +.|.+.
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~-~~~~~~~~l~~~--------~~~~rv~lv~f~~~~----~--~~~~l~~~~~~~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKS-FAKAFISKANIG--------PRLTQVSVLQYGSIT----T--IDVPWNVVPEKAH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHH-HHHHHHHHSCBS--------TTSEEEEEEEESSSE----E--EEECTTCCCCHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHHH-HHHHHHHhcCcC--------CCCeEEEEEEECCcc----e--EEEecCCCCCHHH
Confidence 479999999999998 57887774 467888887421 135899999997643 1 22344 899999
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~ 159 (619)
+...|+.|++.||| ..+.+||..|+..+.....+. .....|++|++.+--++.
T Consensus 70 ~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~g~----r~~~~~~vivltdg~~~~-------------------- 122 (189)
T 1atz_A 70 LLSLVDVMQREGGP---SQIGDALGFAVRYLTSEMHGA----RPGASKAVVILVTDVSVD-------------------- 122 (189)
T ss_dssp HHHHHHTCCCCCCC---CCHHHHHHHHHHHHHSCCTTC----CTTSEEEEEEEECSCCSS--------------------
T ss_pred HHHHHHhCcCCCCc---chHHHHHHHHHHHHhccccCC----CCCCCcEEEEEeCCCCCc--------------------
Confidence 99999999987765 578888888887653211111 123456688887654321
Q ss_pred hhhcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 160 AQAESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 160 ~~~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
+.+..++.+.+.||.++.|.
T Consensus 123 --------~~~~~~~~~~~~gi~v~~ig 142 (189)
T 1atz_A 123 --------SVDAAADAARSNRVTVFPIG 142 (189)
T ss_dssp --------CCHHHHHHHHHTTEEEEEEE
T ss_pred --------hHHHHHHHHHHCCCEEEEEE
Confidence 33678888999999999993
No 8
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.01 E-value=5.4e-09 Score=96.93 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=105.5
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCC--cCHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfT--sD~~~ 79 (619)
.+|||||||++++|+. .|+.+| +++..+++.|.-+ ....|+|||.|.+.. . ..+.++ .|.+.
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~v~~l~~~--------~~~~rv~vv~fs~~~---~---~~~~l~~~~~~~~ 77 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLK-AFVVDMMERLRVS--------QKWVRVAVVEYHDGS---H---AYIGLKDRKRPSE 77 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHH-HHHHHHHHTBCBS--------TTSEEEEEEEESSSE---E---EEECTTCCCCHHH
T ss_pred cccEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcccC--------CCceEEEEEEECCCc---e---EEEecCCCCCHHH
Confidence 4899999999999985 788777 5578888888421 135899999998764 1 123444 78899
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHH-hccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL-~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~ 158 (619)
+...|++|++.||| .-++.+||..|+ ++|.. + ......|.+|||+|-.++.-
T Consensus 78 ~~~~i~~l~~~gg~--~T~~~~aL~~a~~~~~~~---~----~r~~~~~~iillTDG~~~~~------------------ 130 (202)
T 1ijb_A 78 LRRIASQVKYAGSQ--VASTSEVLKYTLFQIFSK---I----DRPEASRIALLLMASQEPQR------------------ 130 (202)
T ss_dssp HHHHHHTCCCCCBS--CCCHHHHHHHHHHHTSSS---C----SCTTSEEEEEEEECCCCCGG------------------
T ss_pred HHHHHHhCcCCCCC--cCcHHHHHHHHHHHHhcc---C----CCCCCCeEEEEEccCCCCcc------------------
Confidence 99999999998774 246778888887 45641 1 11246789999998766420
Q ss_pred hhhhcccCCCHHHHHHHhhhCCcEEEEeC--CC-cchHHHHHHH
Q 007065 159 EAQAESRLSDAETVAKSFVQCSVSLSVIC--PK-QLPKLTAIYN 199 (619)
Q Consensus 159 ~~~~~s~laDaEqVAk~faEk~IsLSIIs--PR-klP~Lk~LFe 199 (619)
...+....++.+.++||.++.|. +. -...|+.|=.
T Consensus 131 ------~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~ 168 (202)
T 1ijb_A 131 ------MSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEK 168 (202)
T ss_dssp ------GCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhC
Confidence 01256788999999999999993 22 2345666644
No 9
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.97 E-value=8.4e-09 Score=94.82 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=99.3
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCC--cCHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIF 80 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfT--sD~~~F 80 (619)
.+|||||||.++||++ |+.+| +++..+++.|.-+ ....+++||.|.+.. . ..++|+ .+...+
T Consensus 6 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~~--------~~~~rvglv~f~~~~---~---~~~~l~~~~~~~~~ 69 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYP-WDAVK-NFLEKFVQGLDIG--------PTKTQVGLIQYANNP---R---VVFNLNTYKTKEEM 69 (200)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHHTSCBS--------TTSEEEEEEEESSSE---E---EEECTTTCSSHHHH
T ss_pred cccEEEEEECCCCccc-HHHHH-HHHHHHHHhcCCC--------CCceEEEEEEECCCc---e---EEEeCCCcCCHHHH
Confidence 4799999999999996 77776 5567788877421 146899999998754 1 234444 578899
Q ss_pred HHHhcCcccCCCCCchhhHHHHHHHHHh-ccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhh
Q 007065 81 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (619)
Q Consensus 81 lqwLdsI~FsGGGfspaAVAEGLAeAL~-~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~ 159 (619)
+..|++|...||+ ..++.+||..|++ +|.... +. .....|.+|||+|-.++.-
T Consensus 70 ~~~i~~l~~~~G~--~T~~~~al~~a~~~~~~~~~-g~----r~~~~~~ivllTDG~~~~~------------------- 123 (200)
T 1v7p_C 70 IVATSQTSQYGGD--LTNTFGAIQYARKYAYSAAS-GG----RRSATKVMVVVTDGESHDG------------------- 123 (200)
T ss_dssp HHHHHHCCCCCCS--CCCHHHHHHHHHHHTTSGGG-TC----CTTSEEEEEEEESSCCSCG-------------------
T ss_pred HHHHHhhhccCCC--CCcHHHHHHHHHHhhccccc-CC----CCCCCeEEEEEccCCCCCc-------------------
Confidence 9999999987763 2457888899987 464311 11 1246789999999776520
Q ss_pred hhhcccCCCHHHHHHHhhhCCcEEEEeCC
Q 007065 160 AQAESRLSDAETVAKSFVQCSVSLSVICP 188 (619)
Q Consensus 160 ~~~~s~laDaEqVAk~faEk~IsLSIIsP 188 (619)
.+.+.+++.+.+++|.+++|.=
T Consensus 124 -------~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 124 -------SMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp -------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred -------ccHHHHHHHHHHCCCEEEEEEe
Confidence 1356788899999999999954
No 10
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.96 E-value=3e-09 Score=95.19 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=98.0
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
..|||||||++++|+..|+.++ +++..+++.|.. ...+++||.|.+.. . ..+++++|.+.+..
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~-~~~~~~~~~~~~----------~~~~v~lv~f~~~~---~---~~~~l~~~~~~~~~ 69 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIY-YFVEQLAHKFIS----------PQLRMSFIVFSTRG---T---TLMKLTEDREQIRQ 69 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHH-HHHHHHHHHCCC----------TTEEEEEEEESSSE---E---EEEEEECCHHHHHH
T ss_pred CeeEEEEEeCCCChhhhHHHHH-HHHHHHHHHhCC----------CCcEEEEEEEecCc---e---EEeccCCCHHHHHH
Confidence 4799999999999999888766 557888888832 35799999997754 1 23477889999999
Q ss_pred HhcCccc--CCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhhh
Q 007065 83 WLSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (619)
Q Consensus 83 wLdsI~F--sGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~~ 160 (619)
+|++|+. .||| -.+.+||..|+..+..... ......|++|||+|-.+..-+
T Consensus 70 ~i~~l~~~~~~g~---T~~~~al~~a~~~l~~~~~-----~~~~~~~~iillTDG~~~~~~------------------- 122 (185)
T 3n2n_F 70 GLEELQKVLPGGD---TYMHEGFERASEQIYYENR-----QGYRTASVIIALTDGELHEDL------------------- 122 (185)
T ss_dssp HHHHHHTCCCCSC---CCHHHHHHHHHHHHHHHHT-----TCBCEEEEEEEEECCCCCHHH-------------------
T ss_pred HHHHHhhhcCCCC---ccHHHHHHHHHHHHhhccc-----cCCCCCcEEEEEcCCCCCCCc-------------------
Confidence 9999983 4665 4467777887764411000 011357899999986553200
Q ss_pred hhcccCCCHHHHHHHhhhCCcEEEEeCC
Q 007065 161 QAESRLSDAETVAKSFVQCSVSLSVICP 188 (619)
Q Consensus 161 ~~~s~laDaEqVAk~faEk~IsLSIIsP 188 (619)
..+++..++.+.+++|.++.|.=
T Consensus 123 -----~~~~~~~~~~~~~~gi~i~~igv 145 (185)
T 3n2n_F 123 -----FFYSEREANRSRDLGAIVYAVGV 145 (185)
T ss_dssp -----HHHHHHHHHHHHHTTEEEEEEEC
T ss_pred -----ccchHHHHHHHHHCCCEEEEEEe
Confidence 01346789999999999999943
No 11
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.95 E-value=3.6e-09 Score=96.38 Aligned_cols=135 Identities=13% Similarity=0.206 Sum_probs=96.6
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc--CHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs--D~~~ 79 (619)
..|||||||+++||+. .|+.+| +++..+++.|.. ...+++||.|.+.. . ..++|+. |...
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~----------~~~~v~vv~f~~~~---~---~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMK-EFVSTVMEQLKK----------SKTLFSLMQYSEEF---R---IHFTFKEFQNNPN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHH-HHHHHHHHHHCC----------TTEEEEEEEESSSE---E---EEECHHHHHHSCC
T ss_pred CeeEEEEEeCCCCCCHHHHHHHH-HHHHHHHHhcCC----------CCeEEEEEEecCCc---e---EEEecCCcCCHHH
Confidence 4899999999999988 788776 457888888851 35799999997754 1 2244544 4457
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHh-ccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~-~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~ 158 (619)
+...|++|.+.||| -.+.+||..|+. +|.... + ......|.+|||+|-.+..-+.
T Consensus 68 ~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~-~----~r~~~~~~iillTDG~~~~d~~---------------- 123 (194)
T 1mf7_A 68 PRSLVKPITQLLGR---THTATGIRKVVRELFNITN-G----ARKNAFKILVVITDGEKFGDPL---------------- 123 (194)
T ss_dssp HHHHHTTCCCCCSC---BCHHHHHHHHHHTTTSGGG-T----CCTTSEEEEEEEESSCCBSCSS----------------
T ss_pred HHHHHHhCcCCCCC---chHHHHHHHHHHHhcCccc-C----CCCCCCeEEEEEcCCCCCCCch----------------
Confidence 88899999986664 468889999995 554211 1 1124678999999988772111
Q ss_pred hhhhcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 159 EAQAESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 159 ~~~~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
+.+.+++.+.++||.++.|.
T Consensus 124 ---------~~~~~~~~~~~~gi~v~~ig 143 (194)
T 1mf7_A 124 ---------GYEDVIPEADREGVIRYVIG 143 (194)
T ss_dssp ---------CGGGTHHHHHHTTEEEEEEE
T ss_pred ---------hhHHHHHHHHHCCCEEEEEE
Confidence 22355777889999999994
No 12
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.92 E-value=1.9e-08 Score=91.25 Aligned_cols=136 Identities=13% Similarity=0.234 Sum_probs=98.1
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc----CH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DV 77 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs----D~ 77 (619)
..|||||||.++||+. .|+.+| +++..+++.|.-+ ....+++||.|.+.. . ..+.|+. |.
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~i~~l~~~--------~~~~rv~vv~F~~~~---~---~~~~l~~~~~~~~ 81 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVK-QFLHTFLMVLPIG--------PEEVNNAVVTYSTDV---H---LQWDLQSPNAVDK 81 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBS--------TTSEEEEEEEESSSE---E---EEECTTSGGGSCH
T ss_pred CeeEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCC--------CCCeEEEEEEeCCce---E---EEEeCCCCCccCH
Confidence 4899999999999964 677776 5578888887421 135899999998764 1 2234444 88
Q ss_pred HHHHHHhcCcccCCCCCchhhHHHHHHHHHhc-cccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccc
Q 007065 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (619)
Q Consensus 78 ~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~-fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge 156 (619)
+.++.+|+.|++.||| -.+.+||..|+.. |... .+. .....|.+|||+|-.+..-
T Consensus 82 ~~~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~-~g~----r~~~~~~iillTDG~~~~~---------------- 137 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGS---TNTSDGLKACKQILFTGS-RPG----REHVPKLVIGMTDGESDSD---------------- 137 (178)
T ss_dssp HHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHHCC-CTT----CTTSCEEEEEEESSCCCHH----------------
T ss_pred HHHHHHHHhCCCCCCC---ccHHHHHHHHHHHhcCcc-cCC----CCCCCEEEEEEcCCCCCCC----------------
Confidence 9999999999987765 3577888888875 4421 111 1246789999998654320
Q ss_pred hhhhhhcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 157 ~~~~~~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
.+.+.+++.+.+++|.+++|.
T Consensus 138 ----------~~~~~~~~~l~~~gi~v~~ig 158 (178)
T 2xgg_A 138 ----------FRTVRAAKEIRELGGIVTVLA 158 (178)
T ss_dssp ----------HHHSHHHHHHHHTTCEEEEEE
T ss_pred ----------ccHHHHHHHHHHCCCEEEEEE
Confidence 135678899999999999994
No 13
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.85 E-value=2.8e-08 Score=92.98 Aligned_cols=138 Identities=14% Similarity=0.280 Sum_probs=96.5
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
.+|||||||.++||++ |+.+| +++..+++.|.- .....++|||.|.+.. .. +..+....+...++.
T Consensus 22 ~~div~vlD~SgSM~~-~~~~k-~~~~~~~~~l~~--------~~~~~rv~lv~F~~~~---~~-~~~l~~~~~~~~~~~ 87 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP-WESVI-AFLNDLLKRMDI--------GPKQTQVGIVQYGENV---TH-EFNLNKYSSTEEVLV 87 (223)
T ss_dssp CEEEEEEEECSTTCCC-HHHHH-HHHHHHHTTSCC--------STTSCCEEEEEESSSE---EE-EECTTTCCSHHHHHH
T ss_pred cceEEEEEECCCChhh-HHHHH-HHHHHHHHhccc--------CCCCeEEEEEEeCCCc---cE-EEecCCCCCHHHHHH
Confidence 4799999999999995 67666 446777776631 1246899999997653 11 112223457889999
Q ss_pred HhcCcccCCCCCchhhHHHHHHHHHhc-cccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhhhh
Q 007065 83 WLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (619)
Q Consensus 83 wLdsI~FsGGGfspaAVAEGLAeAL~~-fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~~~ 161 (619)
.|+.+...||+ ...+.+||..|+.. |+... + ......|.+|||+|-.+..-
T Consensus 88 ~i~~l~~~gG~--~T~~~~aL~~a~~~l~~~~~-~----~~~~~~~~iillTDG~~~~~--------------------- 139 (223)
T 2b2x_A 88 AANKIVQRGGR--QTMTALGIDTARKEAFTEAR-G----ARRGVKKVMVIVTDGESHDN--------------------- 139 (223)
T ss_dssp HHTTCCCCCCS--SCCHHHHHHHHHHTTSSGGG-T----CCTTSEEEEEEEESSCCTTG---------------------
T ss_pred HHHhhhccCCC--CccHHHHHHHHHHHhcCccc-C----CCCCCCeEEEEEcCCCCCCC---------------------
Confidence 99999877663 24578889999875 54211 1 11246789999998655420
Q ss_pred hcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 162 AESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 162 ~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
.+.+.+++.+.++||.+++|.
T Consensus 140 -----~~~~~~~~~~~~~gi~v~~ig 160 (223)
T 2b2x_A 140 -----YRLKQVIQDCEDENIQRFSIA 160 (223)
T ss_dssp -----GGHHHHHHHHHTTTEEEEEEE
T ss_pred -----ccHHHHHHHHHHCCCEEEEEE
Confidence 146788899999999999994
No 14
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=6.9e-08 Score=88.76 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=96.3
Q ss_pred cceEEEEEecccccch------hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcC
Q 007065 3 EKQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD 76 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp------Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD 76 (619)
.+|||||||+++||.. -|+.+|.- +..+++.+ ...+++||.|.+.. -..+++|.|
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~-~~~~~~~~------------~~~~v~lv~F~~~~------~~~~~~~~~ 71 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRL-ISRLVDEL------------DNDKVGMIVFAGDA------FTQLPITSD 71 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHH-HHHHHHTC------------SSCEEEEEEESSSE------EEEEEEESC
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHH-HHHHHHhC------------CCCeEEEEEECCCc------eEeCCCCCC
Confidence 4799999999999986 46776643 45555544 24699999998653 123568889
Q ss_pred HHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccc
Q 007065 77 VDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (619)
Q Consensus 77 ~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge 156 (619)
...+..+|+.|.......+...+.+||..|+..+... ....|.+|||+|-.+..
T Consensus 72 ~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~---------~~~~~~ivllTDG~~~~----------------- 125 (218)
T 3ibs_A 72 YISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQ---------EGVGRAIIVITDGENHE----------------- 125 (218)
T ss_dssp HHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC---------SSCCEEEEEEECCTTCC-----------------
T ss_pred HHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhC---------CCCCcEEEEEcCCCCCC-----------------
Confidence 9999999999986422223467889999999888542 24678999998865442
Q ss_pred hhhhhhcccCCCHHHHHHHhhhCCcEEEEe
Q 007065 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVI 186 (619)
Q Consensus 157 ~~~~~~~s~laDaEqVAk~faEk~IsLSII 186 (619)
.+.+.+++.+.+++|.+++|
T Consensus 126 ----------~~~~~~~~~~~~~~i~v~~i 145 (218)
T 3ibs_A 126 ----------GGAVEAAKAAAEKGIQVSVL 145 (218)
T ss_dssp ----------SCHHHHHHHHHTTTEEEEEE
T ss_pred ----------CcHHHHHHHHHhcCCEEEEE
Confidence 04678899999999999999
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.81 E-value=1.8e-08 Score=91.34 Aligned_cols=134 Identities=13% Similarity=0.247 Sum_probs=94.7
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc--CHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs--D~~~ 79 (619)
..|||||||.+++|+. .|+..| +++..+++.|. ....+++||.|.+.. . ..++|+. +...
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~-~~~~~~~~~l~----------~~~~~v~lv~f~~~~---~---~~~~~~~~~~~~~ 71 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMM-NFVRAVISQFQ----------RPSTQFSLMQFSNKF---Q---THFTFEEFRRSSN 71 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHH-HHHHHHHTTSC----------TTTEEEEEEEESSSE---E---EEECHHHHHHCSS
T ss_pred CeeEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcC----------CCCcEEEEEEeCCCc---c---EEEecCccCCHHH
Confidence 4899999999999998 677444 55677777664 146899999998874 1 2234432 3356
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHH-hccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL-~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~ 158 (619)
++.+|+.+...||| ..+.+||..|+ .+|.... + ......|.+|||+|-.+..=+
T Consensus 72 ~~~~i~~l~~~~g~---T~~~~al~~a~~~l~~~~~-~----~r~~~~~~iillTDG~~~~~~----------------- 126 (198)
T 1n3y_A 72 PLSLLASVHQLQGF---TYTATAIQNVVHRLFHASY-G----ARRDAAKILIVITDGKKEGDS----------------- 126 (198)
T ss_dssp GGGGGTTCCCCCSC---BCHHHHHHHHHTTTTSGGG-T----CCTTSEEEEEEEESSCCBSCS-----------------
T ss_pred HHHHHhcCcCCCCC---chHHHHHHHHHHHHhCccc-C----CCCCCceEEEEECCCCCCCCc-----------------
Confidence 77889998876653 56888999999 5564311 1 112467889999998766211
Q ss_pred hhhhcccCCCHHHHHHHhhhCCcEEEEe
Q 007065 159 EAQAESRLSDAETVAKSFVQCSVSLSVI 186 (619)
Q Consensus 159 ~~~~~s~laDaEqVAk~faEk~IsLSII 186 (619)
.+.+.+++.+.+++|.+++|
T Consensus 127 --------~~~~~~~~~~~~~gi~i~~i 146 (198)
T 1n3y_A 127 --------LDYKDVIPMADAAGIIRYAI 146 (198)
T ss_dssp --------SCHHHHHHHHHHTTCEEEEE
T ss_pred --------ccHHHHHHHHHHCCCEEEEE
Confidence 14578889999999999998
No 16
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.81 E-value=2.3e-08 Score=89.19 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=97.2
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
..|||||||.++||+..|.. +.+++..+++.|.+ ...+++||.|.+.. -..++|+.|...+..
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~----------~~~~v~lv~f~~~~------~~~~~~~~~~~~~~~ 68 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVS----------PEMRLSFIVFSSQA------TIILPLTGDRGKISK 68 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCC----------TTEEEEEEEESSSE------EEEEEEECCHHHHHH
T ss_pred ceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcC----------CCceEEEEEeCCCc------eEEECCCCCHHHHHH
Confidence 47999999999999988776 44667788888732 35799999997654 123567788888888
Q ss_pred HhcCccc--CCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhhh
Q 007065 83 WLSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (619)
Q Consensus 83 wLdsI~F--sGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~~ 160 (619)
.|+.|.. .+| ...+.+||..|+..+.+.. .....|.+|||+|-.+..-.
T Consensus 69 ~l~~l~~~~~~g---~T~~~~al~~a~~~l~~~~-------~~~~~~~iiliTDG~~~~~~------------------- 119 (182)
T 1shu_X 69 GLEDLKRVSPVG---ETYIHEGLKLANEQIQKAG-------GLKTSSIIIALTDGKLDGLV------------------- 119 (182)
T ss_dssp HHHHHHTCCCCS---CCCHHHHHHHHHHHHHHHT-------GGGSCEEEEEEECCCCCTTH-------------------
T ss_pred HHHhcccCCCCC---CchHHHHHHHHHHHHHhcc-------CCCCCeEEEEECCCCcCCCC-------------------
Confidence 8888763 233 3567888888988775421 12467899999997764310
Q ss_pred hhcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 161 QAESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 161 ~~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
..+.+..++.+.+++|.++.|.
T Consensus 120 -----~~~~~~~~~~~~~~~i~i~~ig 141 (182)
T 1shu_X 120 -----PSYAEKEAKISRSLGASVYCVG 141 (182)
T ss_dssp -----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred -----chhHHHHHHHHHhCCCEEEEEe
Confidence 0024678888999999999994
No 17
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.80 E-value=8.9e-08 Score=87.84 Aligned_cols=124 Identities=14% Similarity=0.148 Sum_probs=86.4
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceee-ccCCcCHHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQR-SGWTKDVDIF 80 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr-~GfTsD~~~F 80 (619)
..|||||||+++||+. .|+.+| +.+..+++.|.... ...+++||.|.+.. ...+.. ...+.|.+.+
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~--------~~~~v~lv~f~~~~---~~~~~~~~~~~~~~~~~ 82 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAK-KSLVNLIEKVASYG--------VKPRYGLVTYATYP---KIWVKVSEADSSNADWV 82 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHTTT--------CCCEEEEEEESSSE---EEEECTTSGGGGCHHHH
T ss_pred ceeEEEEEeCCCCCchHHHHHHH-HHHHHHHHHHhcCC--------CCceEEEEEecCcc---ceeeccccCCCCCHHHH
Confidence 4899999999999987 788877 45788888875411 24699999998765 222211 2567788999
Q ss_pred HHHhcCcccCCCC-CchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 81 LHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 81 lqwLdsI~FsGGG-fspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
...|++|...++. .+...+.+||..|+..+.+.. .+.+.......|.+|||+|-.+..
T Consensus 83 ~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~-~~~~~~~~~~~~~iillTDG~~~~ 141 (223)
T 1q0p_A 83 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD-DVPPEGWNRTRHVIILMTDGLHNM 141 (223)
T ss_dssp HHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTT-SSCCTTGGGCEEEEEEEECSCCCS
T ss_pred HHHHHhcccccccCCCCccHHHHHHHHHHHhhccc-cccccccccCCeEEEEECCCCCCC
Confidence 9999999986431 124568889999998775421 111111124678889999987663
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.78 E-value=6.7e-08 Score=89.64 Aligned_cols=139 Identities=14% Similarity=0.247 Sum_probs=96.7
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
.+|||||||.++||++ |+.+| +++..+++.|.- .....+++||.|.+.. .. +..+....+...++.
T Consensus 7 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~--------~~~~~~v~lv~F~~~~---~~-~~~l~~~~~~~~~~~ 72 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP-WDSVT-AFLNDLLKRMDI--------GPKQTQVGIVQYGENV---TH-EFNLNKYSSTEEVLV 72 (213)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHTTSCB--------STTSBEEEEEEESSSE---EE-EECTTTCSSHHHHHH
T ss_pred CccEEEEEECCCChhh-HHHHH-HHHHHHHHhcCC--------CCCCeEEEEEEeCCCc---cE-EEeccccCCHHHHHH
Confidence 4899999999999995 67766 446666766631 1146899999998754 11 112223457889999
Q ss_pred HhcCcccCCCCCchhhHHHHHHHHHhc-cccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhhhh
Q 007065 83 WLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (619)
Q Consensus 83 wLdsI~FsGGGfspaAVAEGLAeAL~~-fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~~~ 161 (619)
.|+.+...||.. -.+.+||..|+.. |.... + ......|.+|||+|-.+..-
T Consensus 73 ~i~~l~~~~G~~--T~~~~aL~~a~~~l~~~~~-~----~r~~~~~~iillTDG~~~~~--------------------- 124 (213)
T 1pt6_A 73 AAKKIVQRGGRQ--TMTALGTDTARKEAFTEAR-G----ARRGVKKVMVIVTDGESHDN--------------------- 124 (213)
T ss_dssp HHHTCCCCCCSS--CCHHHHHHHHHHTTTSGGG-T----CCTTCEEEEEEEESSCCSCS---------------------
T ss_pred HHHhccCCCCCc--ccHHHHHHHHHHHhcCccc-C----CCCCCCeEEEEEcCCCCCCC---------------------
Confidence 999998877632 4577888999875 54211 1 11246789999999765430
Q ss_pred hcccCCCHHHHHHHhhhCCcEEEEeCC
Q 007065 162 AESRLSDAETVAKSFVQCSVSLSVICP 188 (619)
Q Consensus 162 ~~s~laDaEqVAk~faEk~IsLSIIsP 188 (619)
.+.+.+++.+.++||.++.|.=
T Consensus 125 -----~~~~~~~~~~~~~gi~i~~igi 146 (213)
T 1pt6_A 125 -----HRLKKVIQDCEDENIQRFSIAI 146 (213)
T ss_dssp -----HHHHHHHHHHHHTTEEEEEEEE
T ss_pred -----ccHHHHHHHHHHCCCEEEEEEe
Confidence 0356788999999999999953
No 19
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.6e-07 Score=94.53 Aligned_cols=149 Identities=14% Similarity=0.171 Sum_probs=105.0
Q ss_pred EEEEEecccccc--hh----HHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHH
Q 007065 6 LIVAVEGTAAMG--PY----WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDI 79 (619)
Q Consensus 6 IVFVIDgTASMG--pY----i~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~ 79 (619)
+|||||.+.+|. +| |+..| +.+.-+++.+.+.. ..-++|||+|.... +.| ..++|.|..+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k-~Av~~li~~~~~~n--------Ped~VGLVtfag~~----~~v-l~plT~D~~~ 71 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQI-DSVEFIFQAKRNSN--------PENTVGLISGAGAN----PRV-LSTFTAEFGK 71 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHH-HHHHHHHHHHHHHC--------TTCEEEEEECCTTS----CEE-EEEEESCHHH
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHH-HHHHHHHHHHhhCC--------CcceEEEEEecCCc----cee-ccCCcchHHH
Confidence 799999999995 33 44444 55667777653311 23599999997654 112 2467999999
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~ 159 (619)
++..|++|+..|+ .++..||..|+..+.... .....+++||+.+++-.. .+
T Consensus 72 il~aL~~l~~~G~----T~l~~gL~~A~~aLk~~~-------~k~~~~rIIlf~ds~~~~---------------~~--- 122 (268)
T 4b4t_W 72 ILAGLHDTQIEGK----LHMATALQIAQLTLKHRQ-------NKVQHQRIVAFVCSPISD---------------SR--- 122 (268)
T ss_dssp HHHHHTTCCCCSC----CCHHHHHHHHHHHHHTCS-------CTTSEEEEEEEECSCCSS---------------CH---
T ss_pred HHHHhhhcCcCCC----CChHHHHHHHHHHHHhcc-------cCCCceEEEEEECCCCCC---------------CH---
Confidence 9999999996542 567788888887764321 223456778887775321 01
Q ss_pred hhhcccCCCHHHHHHHhhhCCcEEEEeC----CCcchHHHHHHHHhcCC
Q 007065 160 AQAESRLSDAETVAKSFVQCSVSLSVIC----PKQLPKLTAIYNAAKRN 204 (619)
Q Consensus 160 ~~~~s~laDaEqVAk~faEk~IsLSIIs----PRklP~Lk~LFekak~n 204 (619)
.+++.+|+.+.++||.|+||. -..-..|++|.++..++
T Consensus 123 -------~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~ 164 (268)
T 4b4t_W 123 -------DELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNP 164 (268)
T ss_dssp -------HHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSS
T ss_pred -------HHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCC
Confidence 167899999999999999994 34577899999988765
No 20
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.65 E-value=1.7e-07 Score=91.13 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=102.3
Q ss_pred cceEEEEEecccccc-hhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc----CH
Q 007065 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DV 77 (619)
Q Consensus 3 ~~DIVFVIDgTASMG-pYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs----D~ 77 (619)
.+|||||||+++||+ ..|....++++..+++.|.-+ ....++|||.|.+.. . ..+.+++ |.
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~--------~~~~rvglv~Fs~~~---~---~~~~l~~~~~~~~ 83 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLS--------RDTINLYMNLFGSYT---T---ELIRLGSGQSIDK 83 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBC--------TTSEEEEEEEESSSE---E---EEECTTSHHHHCH
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccC--------CCCcEEEEEEecCCc---c---eEEecCCCCccCH
Confidence 589999999999999 456434456678888888421 146899999998864 1 2344554 36
Q ss_pred HHHHHHhcCcc---cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccc
Q 007065 78 DIFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQ 154 (619)
Q Consensus 78 ~~FlqwLdsI~---FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ 154 (619)
..++..|++|+ ..||| -.+.+||..|..+|... + ......|.+|||+|-.|.. +
T Consensus 84 ~~~~~~i~~l~~~~~~~G~---T~~~~AL~~a~~~l~~~--~----~r~~~~~~iIllTDG~~~d---~----------- 140 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGT---TSMTAALDEVQKHLNDR--V----NREKAIQLVILMTDGVPNS---K----------- 140 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSC---CCHHHHHHHHHHHHHTT--C----SCTTSEEEEEEEECSCCSC---H-----------
T ss_pred HHHHHHHHHhhhccCCCCC---CCHHHHHHHHHHHHhhc--c----ccCCCCeEEEEEccCCCCC---c-----------
Confidence 88899999996 55554 45778888888777531 1 1124678999999876652 0
Q ss_pred cchhhhhhcccCCCHHHHHHHhhhCCcEEEEeCCC---cchHHHHHHH
Q 007065 155 NENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK---QLPKLTAIYN 199 (619)
Q Consensus 155 ge~~~~~~~s~laDaEqVAk~faEk~IsLSIIsPR---klP~Lk~LFe 199 (619)
.+....++.+.+.||.++.|.=- ....|+.|-.
T Consensus 141 ------------~~~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~ 176 (266)
T 4hqo_A 141 ------------YRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAG 176 (266)
T ss_dssp ------------HHHHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHT
T ss_pred ------------hHHHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhC
Confidence 14578899999999999999322 2334566654
No 21
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.58 E-value=3e-07 Score=89.42 Aligned_cols=138 Identities=13% Similarity=0.263 Sum_probs=92.3
Q ss_pred cceEEEEEecccccch-hH-HHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccC-CcCHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YW-QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW-TKDVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi-~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~Gf-TsD~~~ 79 (619)
.+|||||||.++||+. .| +.+| +.+..+++.|..+ ....++|||.|.+.. ...+.-..+ ..|...
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k-~~~~~~v~~l~~~--------~~~~rvglv~Fs~~~---~~~~~l~~~~~~~~~~ 88 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAV-PLAMKLIQQLNLN--------DNAIHLYASVFSNNA---REIIRLHSDASKNKEK 88 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHH-HHHHHHHTTCCCC--------TTSEEEEEEEEETTE---EEEEEECSSCSSCHHH
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHH-HHHHHHHHHhccC--------CCCcEEEEEEcCCCc---eEEEEccccCccCHHH
Confidence 5899999999999995 44 5444 4566666666321 136899999998764 222211111 224788
Q ss_pred HHHHhcCcc---cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccc
Q 007065 80 FLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (619)
Q Consensus 80 FlqwLdsI~---FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge 156 (619)
++..|++|. +.||| -.+.+||..|+..+... .. .....|.+|||+|-.+..-
T Consensus 89 l~~~i~~l~~~~~~~G~---T~~~~aL~~a~~~l~~~-~~-----r~~~~~~iillTDG~~~d~---------------- 143 (281)
T 4hqf_A 89 ALIIIKSLLSTNLPYGK---TSLTDALLQVRKHLNDR-IN-----RENANQLVVILTDGIPDSI---------------- 143 (281)
T ss_dssp HHHHHHHHHHTTGGGCS---CCHHHHHHHHHHHHHTS-CC-----CTTCEEEEEEEESSCCSCH----------------
T ss_pred HHHHHHHHhhccCCCCC---ccHHHHHHHHHHHHHhc-cC-----CCCCCEEEEEEecCCCCCc----------------
Confidence 888888886 45554 45778888887766421 11 1245788999988765420
Q ss_pred hhhhhhcccCCCHHHHHHHhhhCCcEEEEeC
Q 007065 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVIC 187 (619)
Q Consensus 157 ~~~~~~~s~laDaEqVAk~faEk~IsLSIIs 187 (619)
.+....++.+.++||.++.|.
T Consensus 144 ----------~~~~~~~~~l~~~gv~i~~ig 164 (281)
T 4hqf_A 144 ----------QDSLKESRKLSDRGVKIAVFG 164 (281)
T ss_dssp ----------HHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------HHHHHHHHHHHHCCCEEEEEe
Confidence 145678888999999999983
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.58 E-value=4e-07 Score=84.19 Aligned_cols=115 Identities=14% Similarity=0.259 Sum_probs=84.1
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCC--cCHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfT--sD~~~ 79 (619)
.+|||||||++++|+. .|+.+| +++..+++.|.-+ ....|+|||.|.+.. . ..++++ .|.+.
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~~--------~~~~rv~vv~fs~~~---~---~~~~l~~~~~~~~ 85 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSK-EFMEEVIQRMDVG--------QDSIHVTVLQYSYMV---T---VEYPFSEAQSKGD 85 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBS--------TTSBEEEEEEESSSE---E---EEECTTSCCCHHH
T ss_pred CcCEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCC--------CCceEEEEEEECCcc---c---EEEecCCcCCHHH
Confidence 4899999999999996 488877 6678889988421 146899999998865 1 123443 48899
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHhc-cccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~~-fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
++..|++|++.||+. -++.+||..|++. |.... + ......|.+|||+|-.+..
T Consensus 86 ~~~~i~~l~~~gg~~--T~~~~aL~~a~~~l~~~~~-g----~r~~~~~~iillTDG~~~d 139 (199)
T 3zqk_A 86 ILQRLREIRYQGGNR--TNTGLALRYLSDHSFLVSQ-G----DREQAPNLVYMVTGNPASD 139 (199)
T ss_dssp HHHHHHHCCCCCCSC--CCHHHHHHHCCCCCTCGGG-T----CCTTSCEEEEEEECSCCSS
T ss_pred HHHHHHhCcCCCCCc--ChHHHHHHHHHHHhhCccc-C----CCCCCCeEEEEEeCCCCch
Confidence 999999999988632 3478888888864 53211 1 1124678999999987654
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.50 E-value=8.1e-07 Score=92.40 Aligned_cols=126 Identities=11% Similarity=0.168 Sum_probs=83.2
Q ss_pred CcceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceee-ccCCcCHHH
Q 007065 2 SEKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQR-SGWTKDVDI 79 (619)
Q Consensus 2 ~~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr-~GfTsD~~~ 79 (619)
..+|||||||.++||+. .|+.+| +.|..+++.|.... ...++|||.|.+.. ...+.. ...+.|.+.
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k-~~~~~l~~~l~~~~--------~~~rv~lv~f~~~~---~~~~~l~~~~~~~~~~ 75 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFK-ESASLMVDRIFSFE--------INVSVAIITFASEP---KVLMSVLNDNSRDMTE 75 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHH-HHHHHHHHHHHTTC--------CCEEEEEEEESSSE---EEEECTTSGGGGCHHH
T ss_pred CCeeEEEEEeCCCccchhhHHHHH-HHHHHHHHHhhccC--------CCceEEEEEccCCC---ceeEeccCCCCCCHHH
Confidence 35899999999999987 677776 55788888884311 35799999997654 211111 123449999
Q ss_pred HHHHhcCcccCCCCC-chhhHHHHHHHHHhccccCCC--CCCCCCCCCcccEEEEeecCCCCC
Q 007065 80 FLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPN--GSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 80 FlqwLdsI~FsGGGf-spaAVAEGLAeAL~~fd~~~~--~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
++..|++|++.++.. ....+.+||..|+.++..... +..........|.+|||+|-.+..
T Consensus 76 ~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~ 138 (509)
T 2odp_A 76 VISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNM 138 (509)
T ss_dssp HHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCS
T ss_pred HHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccC
Confidence 999999999985432 345677888888877732110 000000013568889999976654
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.48 E-value=8.9e-07 Score=91.44 Aligned_cols=124 Identities=14% Similarity=0.174 Sum_probs=85.2
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCcccccee-eccCCcCHHHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIF 80 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vq-r~GfTsD~~~F 80 (619)
..|||||||.++||+. .|+.+|. .+..+++.|.... ...++|||.|.+.. ...+. ....+.|.+.+
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~-~~~~~~~~l~~~~--------~~~~v~lv~f~~~~---~~~~~~~~~~~~~~~~~ 68 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKK-VLVNLIEKVASYG--------VKPRYGLVTYATYP---KIWVKVSEADSSNADWV 68 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHH-HHHHHHHHHHHTT--------CCCEEEEEEESSSE---EEEECTTSGGGGCHHHH
T ss_pred CeeEEEEEECCCCcchhhHHHHHH-HHHHHHHHhhccC--------CCceEEEEEecCCc---eEeeccccccccCHHHH
Confidence 3699999999999975 6777774 4688888874311 35799999998654 22221 12567899999
Q ss_pred HHHhcCcccCCCCC-chhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 81 LHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 81 lqwLdsI~FsGGGf-spaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
...|++|.+.++.. ....+.+||..|+.++.+... ..+.......|.+|||+|-.+..
T Consensus 69 ~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~-~~~~~~~~~~~~iillTDG~~~~ 127 (497)
T 1rrk_A 69 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-VPPEGWNRTRHVIILMTDGLHNM 127 (497)
T ss_dssp HHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC-------CGGGCEEEEEEEECSCCCS
T ss_pred HHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhc-cccccccccceEEEEEeCCCccc
Confidence 99999999865422 247788999999987743211 11111124678999999987654
No 25
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.48 E-value=1.1e-06 Score=95.09 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=83.7
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc----CH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DV 77 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs----D~ 77 (619)
.+|||||||.++||+. .|+.+| +.+..+++.|..++ ...|+|||.|.+.. -..+.++. |.
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~--------~~~rv~lv~f~~~~------~~~~~l~~~~~~~~ 307 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAK-KCLVNLIEKVASYG--------VKPRYGLVTYATYP------KIWVKVSEADSSNA 307 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHHTT--------CCCEEEEEEESSSE------EEEECTTSGGGGCH
T ss_pred ceeEEEEeccCCcccccchHHHH-HHHHHHHHhhhccC--------CCceEEEEEeccCC------ceeEeecccCCcCH
Confidence 4799999999999955 588877 45788899885422 35799999997654 12345554 88
Q ss_pred HHHHHHhcCcccCCCC-CchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCC
Q 007065 78 DIFLHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (619)
Q Consensus 78 ~~FlqwLdsI~FsGGG-fspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPh 138 (619)
+.+++.|++|++.++. .+.-++.+||..|+.++.+.... .+.......|.+|||+|--+.
T Consensus 308 ~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~-~~~~~~~~~~~iillTDG~~n 368 (741)
T 3hrz_D 308 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV-PPEGWNRTRHVIILMTDGLHN 368 (741)
T ss_dssp HHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--C-CCTTGGGEEEEEEEEECSCCC
T ss_pred HHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhc-cccchhccCeEEEEECCCccc
Confidence 9999999999973321 12356888999999876432111 122223467889999998665
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.38 E-value=1.6e-06 Score=78.88 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=77.8
Q ss_pred cceEEEEEecccccch-hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcC--HHH
Q 007065 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD--VDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp-Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD--~~~ 79 (619)
..|||||||++++|+. .|+.+| +++..+++.|.. ...++|||.|.+.. . ..++|+.. ...
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~----------~~~rv~vv~fs~~~---~---~~~~l~~~~~~~~ 64 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKIL-DFMKDVMKKCSN----------TSYQFAAVQFSTSY---K---TEFDFSDYVKRKD 64 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHH-HHHHHHHHHTTT----------SSEEEEEEEESSSE---E---EEECHHHHHHHCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHH-HHHHHHHHHhCC----------CCeEEEEEEECCce---e---EEEcCcccCCHHH
Confidence 5799999999999987 577776 557888888721 45799999998754 1 12455432 224
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHh-ccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~-~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
+...++.|+..+|| -++.+||..|+. +|.... +. .....|.+||++|-.+..
T Consensus 65 ~~~~~~~i~~~~g~---T~~~~aL~~a~~~~~~~~~-g~----r~~~~~~iillTDG~~~~ 117 (179)
T 1mjn_A 65 PDALLKHVKHMLLL---TNTFGAINYVATEVFREEL-GA----RPDATKVLIIITDGEATD 117 (179)
T ss_dssp HHHHHTTCCCCCBC---CCHHHHHHHHHHHTSSGGG-TC----CTTSEEEEEEEESSCCSS
T ss_pred HHHHHHhcccCCCC---ChHHHHHHHHHHHhccccc-CC----CCCCCeEEEEEcCCCCCC
Confidence 66677888877654 578899999984 664211 11 124678999999976653
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.33 E-value=5.2e-06 Score=78.56 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=95.5
Q ss_pred ceEEEEEecccccch------hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCH
Q 007065 4 KQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (619)
Q Consensus 4 ~DIVFVIDgTASMGp------Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~ 77 (619)
..||||||.+.+|.. -|+..| ..+.-+++.|.... ...++|||+|.+..+ . ...++|.|.
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak-~~~~~~~~~~~~~~--------~~d~vGLV~fa~~~a---~--~~~plT~d~ 68 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQK-DTVHMIFNQKINDN--------PENMCGLMTIGDNSP---Q--VLSTLTRDY 68 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHH-HHHHHHHHHHHHHC--------TTCEEEEEECCTTSC---C--EEEEEESCH
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHH-HHHHHHHHHHHhcC--------CCCeEEEEEEcCCCc---E--EecCCCCCH
Confidence 368999999999973 244444 33444444442100 236999999998531 1 224779999
Q ss_pred HHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcc-cEEEEeecCCCCCCCCCcccCccccccccc
Q 007065 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQ-RHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (619)
Q Consensus 78 ~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~q-KhCILI~nSPPhpLPtpVY~P~~~~~~~ge 156 (619)
..++..|+.|...| ..++.+||..|+..+.... ..... |.+||+++.- . . .
T Consensus 69 ~~i~~~L~~l~~~g----~t~l~~aL~~A~~~l~~~~-------~~~~~~riiil~~~~~--~--~------------~- 120 (192)
T 2x5n_A 69 GKFLSAMHDLPVRG----NAKFGDGIQIAQLALKHRE-------NKIQRQRIVAFVGSPI--V--E------------D- 120 (192)
T ss_dssp HHHHHHHTTCCCCS----CCCHHHHHHHHHHHHHTCS-------CTTSEEEEEEEECSCC--S--S------------C-
T ss_pred HHHHHHHHcCCCCC----CchHHHHHHHHHHHHHhcc-------ccCCCceEEEEEECCC--C--C------------C-
Confidence 99999999988654 2678899999998875421 11122 3345554311 0 0 0
Q ss_pred hhhhhhcccCCCHHHHHHHhhhCCcEEEEeC---CC-cchHHHHHHHHhc
Q 007065 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVIC---PK-QLPKLTAIYNAAK 202 (619)
Q Consensus 157 ~~~~~~~s~laDaEqVAk~faEk~IsLSIIs---PR-klP~Lk~LFekak 202 (619)
..+.+.+++.+.+.||.+++|. .. .-. |+.|.++..
T Consensus 121 ---------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n 160 (192)
T 2x5n_A 121 ---------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAAN 160 (192)
T ss_dssp ---------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHC
T ss_pred ---------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhcc
Confidence 0156889999999999999993 22 125 999998875
No 28
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.33 E-value=1.1e-06 Score=102.41 Aligned_cols=137 Identities=13% Similarity=0.227 Sum_probs=100.3
Q ss_pred cceEEEEEecccccchh-HHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCc--CHHH
Q 007065 3 EKQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDI 79 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpY-i~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTs--D~~~ 79 (619)
.+|||||||++++|++. |+.+| +++..+++.|.. ...|+|||.|.+.. -..++++. |.+.
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k-~fv~~lv~~~~~----------~~~rVglV~Fs~~~------~~~~~lt~~~~~~~ 192 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMM-NFVRAVISQFQR----------PSTQFSLMQFSNKF------QTHFTFEEFRRSSN 192 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHH-HHHHHHHHSSCS----------SSEEEEEEEESSSE------EEEECSHHHHSCSC
T ss_pred CccEEEEEcCCCCCChhHHHHHH-HHHHHHHHhccc----------cccEEEEEEECCeE------EEEecCcccCCHHH
Confidence 37999999999999986 88776 557888888852 35899999997753 12345553 5667
Q ss_pred HHHHhcCcccCCCCCchhhHHHHHHHHHh-ccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchh
Q 007065 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (619)
Q Consensus 80 FlqwLdsI~FsGGGfspaAVAEGLAeAL~-~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~ 158 (619)
++..+++|+..||| -++.+||..|++ +|+.. .+ ......|.+|||+|-.+..=+
T Consensus 193 l~~ai~~i~~~gG~---T~~g~AL~~a~~~lf~~~-~g----~R~~~~kviIllTDG~~~~d~----------------- 247 (1095)
T 3k6s_A 193 PLSLLASVHQLQGF---TYTATAIQNVVHRLFHAS-YG----ARRDAAKILIVITDGKKEGDS----------------- 247 (1095)
T ss_dssp GGGGTTTCCCCCSC---BCHHHHHHHHHTTTTSTT-TT----CCSSSEEEEEEEESSCCBSCS-----------------
T ss_pred HHHHHhhhhcccCC---ChHHHHHHHHHHhhcccc-cc----CCCCCCeEEEEEeCCCcCCCc-----------------
Confidence 78889999888764 578899999987 44321 11 123467899999987664211
Q ss_pred hhhhcccCCCHHHHHHHhhhCCcEEEEeCCC
Q 007065 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPK 189 (619)
Q Consensus 159 ~~~~~s~laDaEqVAk~faEk~IsLSIIsPR 189 (619)
.+.+.+|+.+.+.||.++.|.=.
T Consensus 248 --------~~~~~~a~~~r~~GI~i~aIGVG 270 (1095)
T 3k6s_A 248 --------LDYKDVIPMADAAGIIRYAIGVG 270 (1095)
T ss_dssp --------SCHHHHHHHHHHHCEEECCEEBS
T ss_pred --------hhHHHHHHHHHHCCCEEEEEecc
Confidence 15678899999999999999443
No 29
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.20 E-value=7.1e-06 Score=74.15 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=75.9
Q ss_pred cceEEEEEeccccc-chhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHH
Q 007065 3 EKQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (619)
Q Consensus 3 ~~DIVFVIDgTASM-GpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Fl 81 (619)
.+|||||||.++|| +..|+.+|.- +..+++.+.. ...+++||.|.+... + ..+++|.|...+.
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~-~~~~~~~~~~----------~~~~v~lv~f~~~~~--~---~~~~~~~~~~~~~ 68 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGA-VELLLGRAYA----------ARDHVSLITFRGTAA--Q---VLLQPSRSLTQTK 68 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHH-HHHHHHHSCT----------TTSCCCEEEESBSCC--C---BCTTTCSCHHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHH-HHHHHHHhcC----------CCcEEEEEEECCCCc--e---EecCCCCCHHHHH
Confidence 58999999999999 5677777644 4555555411 356999999987431 1 2357889999999
Q ss_pred HHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 82 qwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
.+|+.+...|| -.+.+||..|+.++.... .....+.+|||+|-.|..
T Consensus 69 ~~i~~l~~~g~----T~~~~al~~a~~~l~~~~-------~~~~~~~ivliTDG~~~~ 115 (189)
T 2x31_A 69 RQLQGLPGGGG----TPLASGMEMAMVTAKQAR-------SRGMTPTIALLTDGRGNI 115 (189)
T ss_dssp HHHHHCCCCBC----CCCHHHHHHHHHHHHTCT-------TTCSSEEEEECCBSCCSS
T ss_pred HHHhcCCCCCC----CCHHHHHHHHHHHHHhcc-------CCCCceEEEEECCCCCCC
Confidence 99999986543 245677777777664311 113568999999987654
No 30
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.12 E-value=4.9e-05 Score=80.78 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=76.6
Q ss_pred cceEEEEEecccccc---hhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCC-----
Q 007065 3 EKQLIVAVEGTAAMG---PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT----- 74 (619)
Q Consensus 3 ~~DIVFVIDgTASMG---pYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfT----- 74 (619)
.+|||||||.++||. .-|+.+|.- +.-+++.+.. ..+++||.|.+.. .. .+++|
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a-~~~ll~~L~~-----------~drv~lV~Fs~~a---~~---~~p~t~~l~~ 138 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEA-TKVAIDTLTD-----------GAFFAVVAGTEGA---RV---VYPTGGQLLR 138 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHH-HHHHHHHSCT-----------TCEEEEEEESSSE---EE---EESSSSSCEE
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHH-HHHHHHhCCC-----------CCEEEEEEEcCce---EE---EecCCccccc
Confidence 489999999999997 446666644 5666666632 3589999997764 11 22333
Q ss_pred ---cCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCC
Q 007065 75 ---KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (619)
Q Consensus 75 ---sD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPh 138 (619)
.|...+..+|++|...|| -.+.+||..|+.++... ....|++|||+|--+.
T Consensus 139 ~~~~~~~~l~~~I~~L~~~Gg----T~l~~aL~~A~~~l~~~---------~~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 139 ADYQSRAAAKEAVGRLHANGG----TAMGRWLAQAGRIFDTA---------PSAIKHAILLTDGKDE 192 (464)
T ss_dssp CSHHHHHHHHHHHHTCCCCSC----CCHHHHHHHHHHHHTTC---------TTSEEEEEEEESSCCT
T ss_pred CCHHHHHHHHHHHHcCCCCCC----CcHHHHHHHHHHHHhcC---------CCCCCEEEEEcCCCCC
Confidence 688999999999996443 45889999999888531 1356899999997654
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.93 E-value=2.3e-05 Score=78.31 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=70.5
Q ss_pred cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq 82 (619)
.+||||+||+++||++-|+.+|.- |..++..+..+ ..+.|++||.|++..- +.++.-.+||++. .+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~a-l~~Ll~sl~~~--------~~~~~VavV~F~~~~~--~~~~ll~pfT~~~-~~~~ 201 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREA-VRDLALSLKVR--------SGPLAVSVIAFPGKGE--EATRLVQPFSSEV-NVAA 201 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHH-HHHHHHHHTTS--------SSCEEEEEEEESCSTT--CSCEEEEEEESSC-CHHH
T ss_pred CCCEEEEEECcccHHHHHHHHHHH-HHHHHHHHhcc--------CCCcEEEEEEECCCCc--cceeecCCCCChH-HHHH
Confidence 589999999999999999999966 67778777541 1368999999998762 2222333789988 8888
Q ss_pred HhcCcccCCCCCchhhHHHHHHHHHhccc
Q 007065 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFS 111 (619)
Q Consensus 83 wLdsI~FsGGGfspaAVAEGLAeAL~~fd 111 (619)
+|+.|+. ||+- + +.+||..|+.+|+
T Consensus 202 ~l~~L~a-gG~T-p--lg~AL~~A~~~~~ 226 (242)
T 3rag_A 202 LEAELVA-RGGT-P--TGPAIDHAADLLL 226 (242)
T ss_dssp HHHHCCC-CSCC-C--HHHHHHHHHHHHH
T ss_pred HHhhCCC-CCCC-c--HHHHHHHHHHHHH
Confidence 9999985 4442 2 7788888888774
No 32
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.85 E-value=0.00023 Score=77.08 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=87.7
Q ss_pred ceEEEEEecccccch-------hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCC---------ccccc
Q 007065 4 KQLIVAVEGTAAMGP-------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS---------YCACL 67 (619)
Q Consensus 4 ~DIVFVIDgTASMGp-------Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~P---------y~e~~ 67 (619)
-+||||||.+.+|.. .|+..++ ++.-+++.. +.. ...-++|||+|.+... |...+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~-~i~~~i~~k----i~~----~~~D~vGlv~f~~~~~~~plt~d~~y~~i~ 78 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKK-VITMFVQRQ----VFA----ENKDEIALVLFGTDGTDNPLSGGDQYQNIT 78 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHH-HHHHHHHHH----HHT----TCCCEEEEEEESCSSCBSTTCTTTCSTTEE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHH-HHHHHHHHH----hcC----CCCCEEEEEEEccCCCCCccccccCCCceE
Confidence 689999999999974 5566653 445555531 111 1346999999998762 22333
Q ss_pred eeeccCC-cCHHHHHHHhcC-cccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecC-CCCCCCCCc
Q 007065 68 VQRSGWT-KDVDIFLHWLST-IPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTPV 144 (619)
Q Consensus 68 Vqr~GfT-sD~~~FlqwLds-I~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nS-PPhpLPtpV 144 (619)
|.. ..+ .+.+ .++.|+. |. +|....++.+||..|+.+|..... ......|++||++|- .|+. .
T Consensus 79 vl~-~l~~~~~~-~l~~l~~~l~---~~~~~t~i~~al~~A~~~l~~~~~-----~~k~~~krIiLlTDg~~~~~--~-- 144 (565)
T 1jey_B 79 VHR-HLMLPDFD-LLEDIESKIQ---PGSQQADFLDALIVSMDVIQHETI-----GKKFEKRHIEIFTDLSSRFS--K-- 144 (565)
T ss_dssp EEE-EEECCCHH-HHHHHHTTCC---CCSSCCCHHHHHHHHHHHHHHHSS-----SSCCSEEEEEEECCCCSCCC--C--
T ss_pred Eee-cCCCCCHH-HHHHHHhhcc---CCCccccHHHHHHHHHHHHHHHhh-----cccccccEEEEEeCCCCCCC--H--
Confidence 322 222 2333 4455665 64 222356799999999999854210 011246899999865 3432 1
Q ss_pred ccCccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEE-Ee
Q 007065 145 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLS-VI 186 (619)
Q Consensus 145 Y~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLS-II 186 (619)
.+++.+|+.+.+.||.|+ +|
T Consensus 145 ----------------------~~~~~~a~~l~~~gI~i~~vi 165 (565)
T 1jey_B 145 ----------------------SQLDIIIHSLKKCDISLQFFL 165 (565)
T ss_dssp ----------------------TTHHHHHHHHHHTTEEEEEEE
T ss_pred ----------------------HHHHHHHHHHHhcCcEEEEEe
Confidence 167899999999999999 77
No 33
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.60 E-value=0.00033 Score=76.74 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred Ccce-EEEEEecccccch--------hHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCC-----ccccc
Q 007065 2 SEKQ-LIVAVEGTAAMGP--------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-----YCACL 67 (619)
Q Consensus 2 ~~~D-IVFVIDgTASMGp--------Yi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~P-----y~e~~ 67 (619)
+.+| |||+||.+.+|.. .|+..++ +|..+++. .+..+ ..-++|||+|++... ++.++
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~-~v~~~i~~----kii~~----~~D~vGlVlfgt~~t~n~l~~d~i~ 103 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQ-CIQSVYIS----KIISS----DRDLLAVVFYGTEKDKNSVNFKNIY 103 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHH-HHHHHHHH----HHHTT----CCCEEEEEEESCSSCBSTTCCTTEE
T ss_pred cCceEEEEEEECCHHHcCCCCCCCCChHHHHHH-HHHHHHHH----hhCCC----CCCeEEEEEEccCCCCCcCCCCCeE
Confidence 3456 9999999999976 4555553 23333332 11111 346999999999872 44555
Q ss_pred eee-ccCCcCHHHHHHHhcCcc----------cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecC-
Q 007065 68 VQR-SGWTKDVDIFLHWLSTIP----------FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS- 135 (619)
Q Consensus 68 Vqr-~GfTsD~~~FlqwLdsI~----------FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nS- 135 (619)
+.. .. .-+.+. ++.|..+. ..|- ....++.+||..|+.+|.... .....|++||++|-
T Consensus 104 v~~~L~-~~~~~~-ik~l~~l~~~~~~~~~~~~~g~-~~~t~l~daL~~a~~~f~~~~-------~k~~~k~IiL~TDg~ 173 (609)
T 1jey_A 104 VLQELD-NPGAKR-ILELDQFKGQQGQKRFQDMMGH-GSDYSLSEVLWVCANLFSDVQ-------FKMSHKRIMLFTNED 173 (609)
T ss_dssp EEEEEE-CCCHHH-HHHHHTTSHHHHHHHHHHHHCC-SCCCCHHHHHHHHHHHHHTCS-------SCEEEEEEEEEESCS
T ss_pred EEecCC-CCCHHH-HHHHHHHhhcccchhhhhhcCC-CCCCCHHHHHHHHHHHHHhhc-------hhhcCCEEEEEcCCC
Confidence 543 21 123332 22233321 1121 235689999999999996421 11247899999985
Q ss_pred CCCCCCCCcccCccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe
Q 007065 136 NPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI 186 (619)
Q Consensus 136 PPhpLPtpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII 186 (619)
+||.- . . .. -.+++++|+.+.+.||+|.+|
T Consensus 174 ~p~~~-~--------------~---~~---~~~~~~~a~~l~~~gI~i~~i 203 (609)
T 1jey_A 174 NPHGN-D--------------S---AK---ASRARTKAGDLRDTGIFLDLM 203 (609)
T ss_dssp CTTTT-C--------------H---HH---HHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCCC-c--------------h---HH---HHHHHHHHHHHHhcCcEEEEE
Confidence 45541 0 0 00 014689999999999999999
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.0058 Score=70.37 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred cceEEEEEecccccchhH-------HHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCC-------------
Q 007065 3 EKQLIVAVEGTAAMGPYW-------QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS------------- 62 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpYi-------~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~P------------- 62 (619)
.+|||||||.++||..-+ +.+| +-+..+++.|.. + ...|+|||.|.+..-
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K-~a~~~~ld~L~~-----~----~~drVgLV~Fs~~a~~~~~~~v~~~~~~ 293 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAG-EATRSLIDKITS-----D----SENRVALVTYASTIFDGTEFTVEKGVAD 293 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHH-HHHHHHHHHHHT-----S----TTCEEEEEEESSSBCBSCEEEEECCEEC
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHH-HHHHHHHHHhhc-----C----CCcEEEEEEecCcccccccccccccccc
Confidence 479999999999998764 2233 335666666632 0 357999999997420
Q ss_pred -------------cccccee-------eccCCcCHHHHH---HHhcCccc---------CCCCCchhhHHHHHHHHHhcc
Q 007065 63 -------------YCACLVQ-------RSGWTKDVDIFL---HWLSTIPF---------AGGGFNDAAIAEGLSEALMMF 110 (619)
Q Consensus 63 -------------y~e~~Vq-------r~GfTsD~~~Fl---qwLdsI~F---------sGGGfspaAVAEGLAeAL~~f 110 (619)
|.....+ ..+||.|...+. ..|+.+.. .+|| -++.+||..|+.+|
T Consensus 294 ~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GG---T~i~~AL~~A~~lL 370 (893)
T 2ww8_A 294 KNGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGA---TFTQKALMKADEIL 370 (893)
T ss_dssp TTCCEECCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCS---CCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCC---ChHHHHHHHHHHHH
Confidence 0000000 115677775554 56654321 1232 56788999999888
Q ss_pred ccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065 111 SVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (619)
Q Consensus 111 d~~~~~~q~~~~~~~qKhCILI~nSPPhp 139 (619)
+... .....|++|||+|=-|..
T Consensus 371 ~~~~-------~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 371 TQQA-------RQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp HHHS-------CSSSEEEEEEEESSCCSE
T ss_pred Hhhc-------ccCCCeEEEEEcCCCCCc
Confidence 5311 123578999999987663
No 35
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.10 E-value=0.13 Score=55.37 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=55.2
Q ss_pred cceEEEEEecccccchh-----HHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCC--c
Q 007065 3 EKQLIVAVEGTAAMGPY-----WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--K 75 (619)
Q Consensus 3 ~~DIVFVIDgTASMGpY-----i~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfT--s 75 (619)
..+++||||.++||... +.. +.- --++.+.... .+-+++||+|.+.. ...+++ .
T Consensus 368 ~~~v~lvvD~SgSM~~~~~~~~l~~-~~~--Aa~l~~~~~~---------~~d~vglv~Fs~~~-------~~~~~t~~~ 428 (538)
T 1yvr_A 368 GKRFLLAIDVSASMNQRVLGSILNA-SVV--AAAMCMLVAR---------TEKDSHMVAFSDEM-------LPCPITVNM 428 (538)
T ss_dssp CCCEEEEEECSGGGGSBSTTSSCBH-HHH--HHHHHHHHHH---------HCSSEEEEEESSSE-------ECCSCCTTS
T ss_pred CceEEEEEECccccCCCCCCCcHHH-HHH--HHHHHHHHhc---------cCCceEEEEECCCc-------eEcCCCCcc
Confidence 47999999999999742 111 111 0011111110 23479999998621 122333 3
Q ss_pred CHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCC
Q 007065 76 DVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNP 137 (619)
Q Consensus 76 D~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPP 137 (619)
++..++..|+.+ .||| -++++||..|+..- ...+.+|||+|--.
T Consensus 429 ~l~~~l~~l~~~--~~Gg---T~i~~aL~~a~~~~-------------~~~~~iIliTDg~~ 472 (538)
T 1yvr_A 429 LLHEVVEKMSDI--TMGS---TDCALPMLWAQKTN-------------TAADIFIVFTDCET 472 (538)
T ss_dssp CHHHHHHHHTTC--CCSC---CCTTHHHHHHHHTT-------------CCCSEEEEEECCCC
T ss_pred cHHHHHHHHhcC--CCCC---CcHHHHHHHHHhcc-------------CCCCEEEEEcCCCC
Confidence 466667777754 3444 23456777776541 13478999987543
No 36
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=91.00 E-value=3 Score=47.63 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=61.7
Q ss_pred HHHHHhcCcc--cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC-CCCCcccC--cccccc
Q 007065 79 IFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP-LPTPVYRP--QMQNLD 153 (619)
Q Consensus 79 ~FlqwLdsI~--FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp-LPtpVY~P--~~~~~~ 153 (619)
.+...|+.|+ |..+.....|..-||..|+.++... --++++...++|-- ...-+.+- ...+.+
T Consensus 286 ~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~------------GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ 353 (810)
T 1pcx_A 286 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGIGKLQRRNESGVVNTS 353 (810)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSSTTCCCC----------
T ss_pred HHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc------------CCEEEEEecCCCCCCCCcccccccccccCcc
Confidence 3344556554 4444455788889999999888521 13566666666633 22211110 000000
Q ss_pred ccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe--CCCc--chHHHHHHHHhcCCC
Q 007065 154 QNENNEAQAESRLSDAETVAKSFVQCSVSLSVI--CPKQ--LPKLTAIYNAAKRNP 205 (619)
Q Consensus 154 ~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII--sPRk--lP~Lk~LFekak~n~ 205 (619)
.|..+..+ ....-.+.+|+.+.+.+|.+.+. +... +..|+.|-+..+|..
T Consensus 354 -ke~~~l~~-~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v 407 (810)
T 1pcx_A 354 -KETAQLLS-CQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 407 (810)
T ss_dssp ------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred -cchhhhcc-cchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEE
Confidence 01000011 11123589999999999988887 3333 778999999888874
No 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=90.44 E-value=2.8 Score=48.78 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=63.9
Q ss_pred HHHHHHhcCcc--cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC-CCCCcccC--ccccc
Q 007065 78 DIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP-LPTPVYRP--QMQNL 152 (619)
Q Consensus 78 ~~FlqwLdsI~--FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp-LPtpVY~P--~~~~~ 152 (619)
+.+...|+.|+ |..+.....|..-||..|+.++... --++++...++|-- ...-+.+- ...+.
T Consensus 401 ~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~------------GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~ 468 (926)
T 1m2v_B 401 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGIGKLQRRNESGVVNT 468 (926)
T ss_dssp HHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSSTTCCCCCCC----CC
T ss_pred HHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh------------CCEEEEEecCCCCCCCCcccccccccccCc
Confidence 34444566664 4444455788889999999888531 13455555666532 22211110 00000
Q ss_pred cccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe--CCCc--chHHHHHHHHhcCCC
Q 007065 153 DQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI--CPKQ--LPKLTAIYNAAKRNP 205 (619)
Q Consensus 153 ~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII--sPRk--lP~Lk~LFekak~n~ 205 (619)
+ .|..+..+ ....-.+.+|+.+.+.+|.+.+. +... +..|+.|-+..++..
T Consensus 469 ~-ke~~~ll~-~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v 523 (926)
T 1m2v_B 469 S-KETAQLLS-CQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 523 (926)
T ss_dssp T-THHHHHTS-CSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred c-cchhhhcc-chHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceE
Confidence 0 01000111 11123589999999999988887 3333 778999999888874
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=88.85 E-value=9.2 Score=43.45 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=90.8
Q ss_pred EEEEEecccc--cchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC---------Cccccce------
Q 007065 6 LIVAVEGTAA--MGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG---------SYCACLV------ 68 (619)
Q Consensus 6 IVFVIDgTAS--MGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~---------Py~e~~V------ 68 (619)
.|||||.+.. -..+.+.+++. |...|+.+ -+ ..++++|||+|...= .++.-++
T Consensus 163 yvFvIDvs~~a~~~g~l~~~~~s-l~~~L~~l-----p~----~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d 232 (751)
T 3eh1_A 163 YLFVLDVSHNAVEAGYLTILCQS-LLENLDKL-----PG----DSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDD 232 (751)
T ss_dssp EEEEEECSHHHHHHTHHHHHHHH-HHHHTTTS-----SC----CTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTC
T ss_pred EEEEEEccHhhhhhhHHHHHHHH-HHHHHHhc-----CC----CcCcEEEEEEeCCEEEEEECCCCcccceeeccccccc
Confidence 5999998851 22344444433 22223222 11 146799999997642 0111111
Q ss_pred ---e-eccC----CcCHHHHHHHhcCcc--cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCC
Q 007065 69 ---Q-RSGW----TKDVDIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (619)
Q Consensus 69 ---q-r~Gf----TsD~~~FlqwLdsI~--FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPh 138 (619)
- ..+| .++-+.+...|+.|+ |..+.....+..-||.+|+.++... . -++++...++|-
T Consensus 233 ~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~-----------G-GrI~~F~sg~pt 300 (751)
T 3eh1_A 233 VFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT-----------G-GRVSVFQTQLPS 300 (751)
T ss_dssp TTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT-----------C-EEEEEEECSCCC
T ss_pred cCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC-----------C-CEEEEEecCCCC
Confidence 0 0112 233344445666664 3333344678889999999887521 2 244444455554
Q ss_pred -CCCCCcccCccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe--CCCc--chHHHHHHHHhcCCCC
Q 007065 139 -PLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI--CPKQ--LPKLTAIYNAAKRNPR 206 (619)
Q Consensus 139 -pLPtpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII--sPRk--lP~Lk~LFekak~n~~ 206 (619)
+.+.-+-+-.-....+.+..+..+ ..-.=.+.+|+.+.+.+|.+.+. +... +..|+.|-+..+|..-
T Consensus 301 ~GpG~l~~r~~~~~~~~~ke~~~~~-~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~ 372 (751)
T 3eh1_A 301 LGAGLLQSREDPNQRSSTKVVQHLG-PATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIY 372 (751)
T ss_dssp SSTTCCCCCCCSCGGGGSSSCTTCS-CSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEE
T ss_pred CCCCccccccccccCCCchhhhhhc-chHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEE
Confidence 322211110000000000000011 11123589999999999888776 4443 7788888888888753
No 39
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=85.51 E-value=5.7 Score=45.12 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHHHHhhhCCcEEEEe--CCCc--chHHHHHHHHhcCCC
Q 007065 169 AETVAKSFVQCSVSLSVI--CPKQ--LPKLTAIYNAAKRNP 205 (619)
Q Consensus 169 aEqVAk~faEk~IsLSII--sPRk--lP~Lk~LFekak~n~ 205 (619)
.+.+|+.+.+.+|.+.+. +... +..|+.|-+..+|.-
T Consensus 335 Y~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~ 375 (769)
T 2nut_A 335 FEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYM 375 (769)
T ss_dssp HHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCE
T ss_pred HHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceE
Confidence 478999999999999888 3443 688999998888774
No 40
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=85.18 E-value=3.6 Score=44.44 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.9
Q ss_pred cceEEEEEecccccch
Q 007065 3 EKQLIVAVEGTAAMGP 18 (619)
Q Consensus 3 ~~DIVFVIDgTASMGp 18 (619)
+.+++++||.++||..
T Consensus 362 ~~~~lv~vDvSgSM~~ 377 (535)
T 2nvo_A 362 NTRHLLALDVSGSMTC 377 (535)
T ss_dssp CSEEEEEECCSGGGGS
T ss_pred CceEEEEEECCccccC
Confidence 4789999999999975
No 41
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=81.78 E-value=9.9 Score=43.14 Aligned_cols=37 Identities=8% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHHHHHhhhCCcEEEEe--CCCc--chHHHHHHHHhcCCC
Q 007065 169 AETVAKSFVQCSVSLSVI--CPKQ--LPKLTAIYNAAKRNP 205 (619)
Q Consensus 169 aEqVAk~faEk~IsLSII--sPRk--lP~Lk~LFekak~n~ 205 (619)
.+.+|+.+.+.+|.+.+. +... +..|+.|-+..+|..
T Consensus 329 Y~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v 369 (768)
T 1m2o_A 329 YNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVL 369 (768)
T ss_dssp HHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceE
Confidence 379999999999988887 4444 688999999888874
No 42
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=79.01 E-value=16 Score=41.51 Aligned_cols=182 Identities=16% Similarity=0.231 Sum_probs=89.5
Q ss_pred EEEEEecccc-c-chhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC------C---ccccce------
Q 007065 6 LIVAVEGTAA-M-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG------S---YCACLV------ 68 (619)
Q Consensus 6 IVFVIDgTAS-M-GpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~------P---y~e~~V------ 68 (619)
.|||||.+.. . ..+.+.+++. |...|+.+-. + ......+.++|||+|...= + ++..+|
T Consensus 180 y~FvIDvs~~av~sg~l~~~~~s-l~~~L~~lP~---~-~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d 254 (770)
T 3efo_B 180 FIFMIDVSYSNIKNGLVKLICEE-LKTMLEKIPK---E-EQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGE 254 (770)
T ss_dssp EEEEEECSHHHHHTTHHHHHHHH-HHHHGGGCCC---C-TTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTS
T ss_pred EEEEEEcchhhccchHHHHHHHH-HHHHHHhCCc---c-ccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccccc
Confidence 6899998752 1 2345555544 3334443311 1 0011246899999997542 0 111111
Q ss_pred ---e-eccC----CcCHHHHHHHhcCcc--cCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCC
Q 007065 69 ---Q-RSGW----TKDVDIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (619)
Q Consensus 69 ---q-r~Gf----TsD~~~FlqwLdsI~--FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPh 138 (619)
- ..+| .+.-+.+...|+.|+ |..-...+.+++-+|++|+..+.... .--++++...+.|-
T Consensus 255 ~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~----------~GGkI~~F~s~lP~ 324 (770)
T 3efo_B 255 VFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD----------CPGKLFIFHSSLPT 324 (770)
T ss_dssp CCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT----------CCEEEEEEECSCCC
T ss_pred ccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCC----------CCcEEEEEecCCCC
Confidence 0 0122 222233334455553 22222345667778888887664210 12344555555444
Q ss_pred --CCCCCccc--CccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe-CCCc---chHHHHHHHHhcCCC
Q 007065 139 --PLPTPVYR--PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI-CPKQ---LPKLTAIYNAAKRNP 205 (619)
Q Consensus 139 --pLPtpVY~--P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII-sPRk---lP~Lk~LFekak~n~ 205 (619)
.-..-+-+ ....+. +.|. +..+ ..-.=.+.+|+.+.+.+|.+.+. ++.. +..|+.|-+..+|..
T Consensus 325 t~GpG~l~~r~~~~~~~t-~ke~-~~~~-~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 325 AEAPGKLKNRDDKKLVNT-DKEK-ILFQ-PQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp SSSTTCCCCCCCCCCSSC-SCGG-GGGS-CSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCccccccccccccCC-cchh-hhhc-chHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 32221111 000000 1111 1111 12223589999999999888776 4443 678889988888874
No 43
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=77.28 E-value=38 Score=38.58 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=89.5
Q ss_pred EEEEEeccccc--chhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCC---------Cccccce------
Q 007065 6 LIVAVEGTAAM--GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG---------SYCACLV------ 68 (619)
Q Consensus 6 IVFVIDgTASM--GpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~---------Py~e~~V------ 68 (619)
.|||||.+..- ..+.+.+++. |...|+.+-. +......+.++|||+|...= .++..+|
T Consensus 176 y~FvIDvs~~av~sg~l~~~~~s-i~~~L~~lp~----~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d 250 (766)
T 3eh2_A 176 FIFMIDVSYNAIRTGLVRLLCEE-LKSLLDFLPR----EGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVAD 250 (766)
T ss_dssp EEEEEECSHHHHHTTHHHHHHHH-HHHHGGGCCC----CSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTT
T ss_pred EEEEEECchhhccchHHHHHHHH-HHHHHHhCCc----ccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhh
Confidence 58999988421 1234444433 2333333311 10011246899999997631 1112222
Q ss_pred ---e-eccC----CcCHHHHHHHhcCcccCCC--CCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCC
Q 007065 69 ---Q-RSGW----TKDVDIFLHWLSTIPFAGG--GFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (619)
Q Consensus 69 ---q-r~Gf----TsD~~~FlqwLdsI~FsGG--GfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPh 138 (619)
- ..+| .+.-+.+...|+.|+-.-. -..+.+++-+|++|+..+... ..--++++...+.|-
T Consensus 251 ~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~----------~~GGkI~~F~s~lP~ 320 (766)
T 3eh2_A 251 MFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA----------ECAGKLFLFHTSLPI 320 (766)
T ss_dssp CCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT----------TCCEEEEEEECSCCC
T ss_pred hccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC----------CCCcEEEEEecCCCC
Confidence 1 0122 2222334445566542212 233566777888888766421 122345555555454
Q ss_pred --CCCCCcccC--ccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe-C-CCc--chHHHHHHHHhcCCC
Q 007065 139 --PLPTPVYRP--QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI-C-PKQ--LPKLTAIYNAAKRNP 205 (619)
Q Consensus 139 --pLPtpVY~P--~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII-s-PRk--lP~Lk~LFekak~n~ 205 (619)
.-..-+-+- ..... +.|. +..+ ..-.=.+.+|+.+.+.+|.+.+. + ... +..|+.|-+..+|..
T Consensus 321 t~GpG~l~~r~~~~~~~s-dke~-~~~~-~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 321 AEAPGKLKNRDDRKLINT-DKEK-TLFQ-PQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp SSSTTCCCCCCCGGGTTS-TTGG-GGTS-CSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCcccccccccccCCC-cchh-hhcc-chHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 333211110 00000 1111 1111 12223489999999998877776 3 443 678899998888875
No 44
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=27.41 E-value=1.7e+02 Score=30.04 Aligned_cols=127 Identities=9% Similarity=0.150 Sum_probs=75.7
Q ss_pred ccccceeeccCCcCHHHHHHHhcCcccCCCCC-chhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCC
Q 007065 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (619)
Q Consensus 63 y~e~~Vqr~GfTsD~~~FlqwLdsI~FsGGGf-spaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLP 141 (619)
|.+.+|-|+.-...+++|-++..+++++=||+ ..++=..+|+-.+++.+... . . ..+++..|+|-. |
T Consensus 98 ~~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g--~-----l-~gl~va~vGD~~-~--- 165 (310)
T 3csu_A 98 YVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQG--R-----L-DNLHVAMVGDLK-Y--- 165 (310)
T ss_dssp TCSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHS--C-----S-SSCEEEEESCTT-T---
T ss_pred hCCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhC--C-----c-CCcEEEEECCCC-C---
Confidence 44556666665666777776654788888887 47888899999998876532 1 1 123444443210 0
Q ss_pred CCcccCccccccccchhhhhhcccCCCHHHHHHHhhhC-CcEEEEeCCCcch---HHHHHHHHhcCCCCCCCCCCCCCCC
Q 007065 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQLP---KLTAIYNAAKRNPRAADPPVDNSKN 217 (619)
Q Consensus 142 tpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk-~IsLSIIsPRklP---~Lk~LFekak~n~~~a~ps~dyAKd 217 (619)
+ ..+-.++..+... |++|.+++|+.+. .+.+..++.+..-.......+-.++
T Consensus 166 ----------------------~--rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~ 221 (310)
T 3csu_A 166 ----------------------G--RTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAE 221 (310)
T ss_dssp ----------------------C--HHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTT
T ss_pred ----------------------C--chHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcC
Confidence 1 1456788888999 9999999999972 2333333333221111112334555
Q ss_pred CceEEEec
Q 007065 218 PHFLVLIS 225 (619)
Q Consensus 218 P~HLVLL~ 225 (619)
-..+...+
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 55665554
No 45
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=23.32 E-value=24 Score=35.34 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=23.5
Q ss_pred cccEE-EEeecCCCCCCCCCcccCccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEeCCCcchHHHHHHHHhcC
Q 007065 125 GQRHC-ILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKR 203 (619)
Q Consensus 125 ~qKhC-ILI~nSPPhpLPtpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSIIsPRklP~Lk~LFekak~ 203 (619)
.+||+ |-|..+.|+.-. |.++.+|..+ +...|.| |-.-||.||+|+-.
T Consensus 30 ~~rH~fV~i~~~~~~~~d-----p~lE~vdi~q---------------I~DKFPe-----------~k~gL~ELy~kgP~ 78 (231)
T 3l15_A 30 YQRHLFVHISQHCPSPGA-----PPLESVDVRQ---------------IYDKFPE-----------KKGGLRELYDRGPP 78 (231)
T ss_dssp -CCEEEEEEEC--------------CCEEEGGG---------------GGGGSCC-----------CSTTHHHHHHHSCG
T ss_pred ccceEEEEeCCCCCCCCC-----cccceeeHHH---------------hhhhCCc-----------cchHHHHHHhhCCC
Confidence 46887 889988877643 3344444333 3333333 33459999999843
No 46
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=21.48 E-value=1.6e+02 Score=30.97 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=61.9
Q ss_pred CccccceeeccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCC
Q 007065 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (619)
Q Consensus 62 Py~e~~Vqr~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLP 141 (619)
.|.+.+|-|+.-...+.+|-++. +++.+=||+..++=..+|+-.+++.+..+++. . -..+++..|+|-
T Consensus 95 ~y~D~IviR~~~~~~~~~lA~~~-~vPVINag~~~~HPtQaLaDl~TI~E~~~~G~----~-l~glkva~vGD~------ 162 (355)
T 4a8p_A 95 RLVDILMARVERHHSIVDLANCA-TIPVINGMSDYNHPTQELGDLCTMVEHLPEGK----K-LEDCKVVFVGDA------ 162 (355)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHC-SSCEEECCCSSCCHHHHHHHHHHHHHTCCTTC----C-GGGCEEEEESCC------
T ss_pred HhCCEEEEecCcHHHHHHHHHhC-CCCEEeCCCCCCCcHHHHHHHHHHHHHhhcCC----C-CCCCEEEEECCC------
Confidence 56667777876666666666654 57766666677888899999998887541110 0 123444455442
Q ss_pred CCcccCccccccccchhhhhhcccCCCHHHHHHHhhhCCcEEEEeCCCcc
Q 007065 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (619)
Q Consensus 142 tpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSIIsPRkl 191 (619)
. ..+-.++.++...|++|.+++|+.+
T Consensus 163 ~------------------------rva~Sl~~~~~~~G~~v~~~~P~~~ 188 (355)
T 4a8p_A 163 T------------------------QVCFSLGLITTKMGMNFVHFGPEGF 188 (355)
T ss_dssp C------------------------HHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred c------------------------hhHHHHHHHHHHcCCEEEEECCCcc
Confidence 0 1345677788888999999999985
No 47
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=21.31 E-value=97 Score=30.95 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCHHHHHHHhhhCCcEEEEeCC--C------cchHHHHHHHHhcCC
Q 007065 167 SDAETVAKSFVQCSVSLSVICP--K------QLPKLTAIYNAAKRN 204 (619)
Q Consensus 167 aDaEqVAk~faEk~IsLSIIsP--R------klP~Lk~LFekak~n 204 (619)
.|+...|+++.++||.+++|-= . -...|++|=+.+++.
T Consensus 25 ~~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~ 70 (242)
T 3rag_A 25 PDPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGM 70 (242)
T ss_dssp SCHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCe
Confidence 3789999999999999999932 1 246788887776655
No 48
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=20.60 E-value=3.3e+02 Score=27.75 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=73.8
Q ss_pred ccccceeeccCCcCHHHHHHHhcCcccCCCCCc-hhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCC
Q 007065 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFN-DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (619)
Q Consensus 63 y~e~~Vqr~GfTsD~~~FlqwLdsI~FsGGGfs-paAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLP 141 (619)
|.+.+|-|+.-...+++|-++ .+++++=||++ .++=..+|+-.+++.+... . -..+++.+|+|-. |
T Consensus 96 ~~D~iviR~~~~~~~~~lA~~-~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g--~------l~glkva~vGD~~-~--- 162 (306)
T 4ekn_B 96 YADIIVLRHPSEGAARLASEY-SQVPIINAGDGSNQHPTQTLLDLYTIMREIG--R------IDGIKIAFVGDLK-Y--- 162 (306)
T ss_dssp HCSEEEEECSSTTHHHHHHHH-CSSCEEESCSSSSCCHHHHHHHHHHHHHHHS--C------STTCEEEEESCTT-T---
T ss_pred hCcEEEEEcCChHHHHHHHHh-CCCCEEeCCCCCCcCcHHHHHHHHHHHHHhC--C------cCCCEEEEEcCCC-C---
Confidence 445577776666666666665 57888878774 6778889999888876532 1 1234444454310 0
Q ss_pred CCcccCccccccccchhhhhhcccCCCHHHHHHHhhhC-CcEEEEeCCCcch---HHHHHHHHhcCCCCCCCCCCCCCCC
Q 007065 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQLP---KLTAIYNAAKRNPRAADPPVDNSKN 217 (619)
Q Consensus 142 tpVY~P~~~~~~~ge~~~~~~~s~laDaEqVAk~faEk-~IsLSIIsPRklP---~Lk~LFekak~n~~~a~ps~dyAKd 217 (619)
+ ..+-.++.++... |++|.+++|+.+. .+.+..++.+..-...+...+-+++
T Consensus 163 ----------------------~--rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~ 218 (306)
T 4ekn_B 163 ----------------------G--RTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDD 218 (306)
T ss_dssp ----------------------C--HHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTT
T ss_pred ----------------------C--cHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcC
Confidence 0 1356778888898 9999999999863 2322223222211111112334566
Q ss_pred CceEEEec
Q 007065 218 PHFLVLIS 225 (619)
Q Consensus 218 P~HLVLL~ 225 (619)
-..+...+
T Consensus 219 aDvvy~~~ 226 (306)
T 4ekn_B 219 IDVLYVTR 226 (306)
T ss_dssp CSEEEECC
T ss_pred CCEEEeCC
Confidence 66666654
Done!