Query 007066
Match_columns 619
No_of_seqs 250 out of 826
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.1 0.054 1.8E-06 57.8 13.4 122 9-137 102-237 (511)
2 3gia_A Uncharacterized protein 96.0 0.02 7E-07 59.9 9.5 105 7-123 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.3 0.054 1.8E-06 56.6 9.6 106 8-122 99-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 29.6 20 0.00069 32.2 1.7 21 589-611 30-50 (124)
5 3luu_A Uncharacterized protein 24.7 25 0.00084 30.2 1.3 20 588-607 34-53 (101)
6 2l6n_A Uncharacterized protein 23.1 31 0.0011 31.4 1.6 15 589-603 37-51 (132)
7 3bwz_A Cellulosomal scaffoldin 22.0 25 0.00084 33.8 0.8 6 476-481 111-116 (181)
8 2rdd_B UPF0092 membrane protei 17.8 1.6E+02 0.0056 20.9 4.2 19 313-331 1-19 (37)
9 3ghp_A Cellulosomal scaffoldin 17.6 35 0.0012 33.7 0.8 13 79-91 46-58 (227)
10 1tyj_A Cellulosomal scaffoldin 16.2 34 0.0011 32.6 0.3 13 79-91 37-49 (170)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.06 E-value=0.054 Score=57.78 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=63.4
Q ss_pred cchhHHHhhhhccccc--cCCCCCC--eEehhHHHHHHHHHhhhcccchhhhhhhhhH----HHHHHHHHHHHHHHhhcc
Q 007066 9 TPAISVLSSVSGLQVT--ENKLTDG--ELLILACVILVGLFALQHFGTHKVAVMFAPI----IIVWLISIFAVGLYNVIH 80 (619)
Q Consensus 9 TPAiSVLSAveGl~v~--~p~l~~~--~vv~is~~ILv~LF~~Q~~GT~kvg~~FgPI----m~vWF~~i~~~Gi~ni~~ 80 (619)
+.+.+...+.+-++.. .|+++.+ ....+++++++++..+--+|....+++..-. +++-++.+.++|+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 181 (511)
T 4djk_A 102 GFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS 181 (511)
T ss_dssp HTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444433 4655432 1456778888888899999988777654332 222344455667665544
Q ss_pred cCccee----eecChHHHHHHHhhcCcccceeecceeeeecchhhhhccCCCCc--ccceeee
Q 007066 81 WNPKVI----SAISPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFT--ALSIRLA 137 (619)
Q Consensus 81 ~~p~Vl----~AlnP~ya~~f~~~~~~~g~~~LG~V~L~iTG~EALyADlGHFg--~~~Ir~a 137 (619)
.+|.-+ ..+.|.+ .+..+|..+..++.+.+|-|+.-.=-+-.- +|.+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 182 GAPVAIEMDSKTFFPDF-------SKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp -----------CCCCCT-------TSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred CCcccccCcccccCCCc-------ccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 233211 1122211 123456677788899999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.98 E-value=0.02 Score=59.91 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=55.4
Q ss_pred cccchhHHHhhhhccccccCCCCCC-eEehhHHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccC
Q 007066 7 VLTPAISVLSSVSGLQVTENKLTDG-ELLILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWN 82 (619)
Q Consensus 7 viTPAiSVLSAveGl~v~~p~l~~~-~vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~vWF~~i~~~Gi~ni~~~~ 82 (619)
+++.|....+..+-+.-..|...++ ....+++++++++..+.-+|....+++ +..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3445555555444444333433221 233567888888888899998776654 44444444444445555443 4
Q ss_pred cceeee-cChHHHHHHHhhcCccc-ceeecceeeeecchhhhh
Q 007066 83 PKVISA-ISPLYIIKYFRETGKTG-WISLGGLLLCITGTEAMF 123 (619)
Q Consensus 83 p~Vl~A-lnP~ya~~f~~~~~~~g-~~~LG~V~L~iTG~EALy 123 (619)
|+-+.. ++|. +..| +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHH
Confidence 443222 2332 1112 223444567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.32 E-value=0.054 Score=56.62 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=51.5
Q ss_pred ccchhHHHhhhhccccccCCCCCCe-EehhHHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccCc
Q 007066 8 LTPAISVLSSVSGLQVTENKLTDGE-LLILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNP 83 (619)
Q Consensus 8 iTPAiSVLSAveGl~v~~p~l~~~~-vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~vWF~~i~~~Gi~ni~~~~p 83 (619)
++.+....+..+=++...|.+.++. ...+++++++++..+--+|.+..+++ +.++.++=++.+.+. .+...++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~---~~~~~~~ 175 (445)
T 3l1l_A 99 IGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVF---GWFWFRG 175 (445)
T ss_dssp HHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT---TSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCh
Confidence 3444444555555554455543321 23466777777788888888777765 444433323333333 3344455
Q ss_pred cee-eecChHHHHHHHhhcCccc-ceeecceeeeecchhhh
Q 007066 84 KVI-SAISPLYIIKYFRETGKTG-WISLGGLLLCITGTEAM 122 (619)
Q Consensus 84 ~Vl-~AlnP~ya~~f~~~~~~~g-~~~LG~V~L~iTG~EAL 122 (619)
+.+ ..++|.-. .+..+ +..+...+.+.+|-|+.
T Consensus 176 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 176 ETYMAAWNVSGL------GTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp CCCCCC-----------------HHHHHHHHHHTTTTTTHH
T ss_pred hhcccccCccCC------ccHHHHHHHHHHHHHHHHhHHHH
Confidence 543 33444210 00111 23344566778888865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=29.57 E-value=20 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=15.1
Q ss_pred HHHHhhhcCCCCcccccCCCCEE
Q 007066 589 YSFLRKNCRGPSVALNIPHISLI 611 (619)
Q Consensus 589 Y~FLRkNcR~~~~~L~IP~~~ll 611 (619)
|.|||.||+++...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999865543 45544
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=24.67 E-value=25 Score=30.17 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=10.5
Q ss_pred HHHHHhhhcCCCCcccccCC
Q 007066 588 LYSFLRKNCRGPSVALNIPH 607 (619)
Q Consensus 588 ~Y~FLRkNcR~~~~~L~IP~ 607 (619)
=|.|||.||+.+...-.-+.
T Consensus 34 ~~~wLRd~c~ca~c~~~~t~ 53 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHTPD 53 (101)
T ss_dssp EHHHHHHTCCCC--------
T ss_pred CHHHHHhhCCChhhcCccCC
Confidence 37899999997765444333
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=23.10 E-value=31 Score=31.43 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.2
Q ss_pred HHHHhhhcCCCCccc
Q 007066 589 YSFLRKNCRGPSVAL 603 (619)
Q Consensus 589 Y~FLRkNcR~~~~~L 603 (619)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 699999999876553
No 7
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=21.99 E-value=25 Score=33.76 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=2.4
Q ss_pred Ccccee
Q 007066 476 GRMAVI 481 (619)
Q Consensus 476 ~~~~~~ 481 (619)
|..+++
T Consensus 111 G~iavI 116 (181)
T 3bwz_A 111 GTVAVV 116 (181)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 333444
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=17.80 E-value=1.6e+02 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=10.4
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 007066 313 GGWVPLVLSSVFMVVMYIW 331 (619)
Q Consensus 313 GGW~pl~ia~~~~~iM~~W 331 (619)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4565555555555666443
No 9
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=17.62 E-value=35 Score=33.74 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 007066 79 IHWNPKVISAISP 91 (619)
Q Consensus 79 ~~~~p~Vl~AlnP 91 (619)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
No 10
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=16.18 E-value=34 Score=32.60 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 007066 79 IHWNPKVISAISP 91 (619)
Q Consensus 79 ~~~~p~Vl~AlnP 91 (619)
++|||+||+|+||
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
Done!