Query 007068
Match_columns 619
No_of_seqs 250 out of 826
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007068.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007068hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 24.2 22 0.0016 22.2 2.2 20 314-333 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 14.0 48 0.0035 25.9 2.8 24 577-600 73-96 (113)
3 d2yvxa3 f.57.1.1 (A:276-448) M 12.1 20 0.0014 31.9 -0.3 120 144-276 12-133 (173)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.5 30 0.0022 25.4 -0.0 39 145-185 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 5.9 1.3E+02 0.0093 23.3 2.2 26 412-437 57-82 (103)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 5.9 1.4E+02 0.01 22.0 2.4 30 410-439 46-75 (89)
7 d1vlfn1 b.3.5.1 (N:196-274) Tr 5.6 2.3E+02 0.017 21.1 3.5 28 409-439 34-62 (79)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 5.1 3E+02 0.022 26.9 5.1 82 263-344 351-434 (509)
9 d1jl0a_ d.156.1.1 (A:) S-adeno 4.9 91 0.0067 30.1 0.8 39 530-568 109-147 (325)
10 d1cs6a3 b.1.1.4 (A:209-299) Ax 4.7 1.9E+02 0.014 20.9 2.6 41 393-433 35-75 (91)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.21 E-value=22 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.850 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHHHhH
Q 007068 314 GWVPLVLSSVFMVVMYIWHY 333 (619)
Q Consensus 314 GW~pl~ia~~~~~iM~~W~~ 333 (619)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 79998888888888888854
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=13.98 E-value=48 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCC
Q 007068 577 SSFVKRFMIDILYSFLRKNCRGPS 600 (619)
Q Consensus 577 S~~~Kk~~In~~Y~FLRkNcR~~~ 600 (619)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998754
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=12.11 E-value=20 Score=31.92 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=68.6
Q ss_pred hHHHhhcccc--hhhhccCCccccCcceeeccCcchHHHHHHHHHHHHhhhhheeehhhhHHHHHHHhCCCCceeEEecC
Q 007068 144 PCLVVQYMGQ--AAYLSKNLDKIPNSFYDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTS 221 (619)
Q Consensus 144 P~L~L~Y~GQ--gA~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAtIIASQA~ISg~FSl~~Qai~Lg~~Pr~ki~hTS 221 (619)
|-|++|.+|+ +|+++++-|+.-+-+-. =.++.|+ ++-.+.-++||+. +++-+++++|..-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 4445555554 46666654443332211 1356666 6677888899986 5889999999643211 11
Q ss_pred CccCCceeechhhHHHHHHHhheeEEecCchhhHhhhcceeehhHHHHHHHHHHH
Q 007068 222 RHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALI 276 (619)
Q Consensus 222 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v 276 (619)
+....++.+-.+|=+.+-..+.....+.....++-+=|++...+|++.+++=+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456667777665555554444455555566666666666666665554433
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.55 E-value=30 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHhhcccchhhhccCCccccCcceeeccCcchHHHHHHHH
Q 007068 145 CLVVQYMGQAAYLSKNLDKIPNSFYDSIPEPVFWPVFVVAT 185 (619)
Q Consensus 145 ~L~L~Y~GQgA~ll~~p~~~~npFy~~~P~~~~~P~~vlAt 185 (619)
++++--++=+.|+.++.. +|.-|.++|+.+.|-.+-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 344444555566776643 344599999999998775544
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.87 E-value=1.3e+02 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.545 Sum_probs=20.6
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 007068 412 EERFLIGRVCPRPYRMYRCIVRYGYK 437 (619)
Q Consensus 412 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 437 (619)
+....|..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34567778877788999999988764
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.85 E-value=1.4e+02 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=23.4
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecc
Q 007068 410 SPEERFLIGRVCPRPYRMYRCIVRYGYKDV 439 (619)
Q Consensus 410 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~ 439 (619)
....++.+..+...+-|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345668888888777899999999887544
No 7
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=5.60 E-value=2.3e+02 Score=21.05 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=23.0
Q ss_pred cCCCceEEEEEecCCCCcEEEEEEEE-eeecc
Q 007068 409 VSPEERFLIGRVCPRPYRMYRCIVRY-GYKDV 439 (619)
Q Consensus 409 V~~~eR~~v~~~~~~~~~~~r~~~ry-Gy~d~ 439 (619)
..+.=+|.++.+.+ |-|.+.+.| ||...
T Consensus 34 Td~~G~F~f~~l~~---G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 34 TNFFGEFKFDALDN---GEYTVEIDADGKSYS 62 (79)
T ss_dssp CCTTSEEEEEEECS---EEEEEEEEETTEEEE
T ss_pred ECCCCcEEEEecCC---CCEEEEEEEecccce
Confidence 45667899999988 789999998 88764
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.13 E-value=3e+02 Score=26.88 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccC--CcchHHHHHHHHHHHHHHHhHhHHHHHh
Q 007068 263 MTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQ--GGWVPLVLSSVFMVVMYIWHYGTRKKYN 340 (619)
Q Consensus 263 ~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sanl~Ki~~--GGW~pl~ia~~~~~iM~~W~~G~~~~~~ 340 (619)
+..-++-++...+.=..-|++++...+...+.++..=+.+++.+.....| .+=+.+.+.+.+-++...|.||.++..+
T Consensus 351 s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~ 430 (509)
T d2a65a1 351 SSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWE 430 (509)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHHHHHH
Q ss_pred hhhc
Q 007068 341 FDLH 344 (619)
Q Consensus 341 ~~~~ 344 (619)
...+
T Consensus 431 di~~ 434 (509)
T d2a65a1 431 EINR 434 (509)
T ss_dssp HHHT
T ss_pred HHHh
No 9
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.95 E-value=91 Score=30.12 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHcCcEEEeec
Q 007068 530 RRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIMGH 568 (619)
Q Consensus 530 ~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~ 568 (619)
+|+.-..+..++....+.++|.+.|++....|..|++|+
T Consensus 109 sRknf~fP~~Q~~pH~sf~~Ev~~L~~~f~~G~aY~~G~ 147 (325)
T d1jl0a_ 109 SRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGR 147 (325)
T ss_dssp EEECCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred ecccCcCcccCCcccCCHHHHHHHHHHhCCCCceEEecC
No 10
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.75 E-value=1.9e+02 Score=20.94 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=0.0
Q ss_pred ceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEE
Q 007068 393 HKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVR 433 (619)
Q Consensus 393 he~~vfv~i~~~~~P~V~~~eR~~v~~~~~~~~~~~r~~~r 433 (619)
.++.|+-.=......+...+..+.+..+...+.|.|+|++.
T Consensus 35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
Done!