BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007070
         (619 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
 pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
          Length = 382

 Score = 28.9 bits (63), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 3   PEHTFIRVQERFSRVLTPRVRAYL--------EYIYLFIAITLFCVLVVMHANYVQQPGC 54
           PE  F+   ER  R +TPR +A +          +Y    +     L V H  Y+     
Sbjct: 146 PEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEI 205

Query: 55  -------SSEFAGIRMTEAQLIQIKISSAGKLALKFWRTDME--PVEHL-AEGSVSSQSF 104
                     F+  R+     + +   +A   A+  WR      P E + A  SVSSQS 
Sbjct: 206 YEHLLYEGEHFSPGRVAPEHTLTVN-GAAXAFAMTGWRIGYACGPKEVIKAMASVSSQST 264

Query: 105 KPTD-----SAVNKIDKEEARNSFALSAKEAFK 132
              D     + +  +  +EA  +F   A+EA++
Sbjct: 265 TSPDTIAQWATLEALTNQEASRAFVEMAREAYR 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,525,051
Number of Sequences: 62578
Number of extensions: 690288
Number of successful extensions: 1618
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 2
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)