Query 007070
Match_columns 619
No_of_seqs 94 out of 96
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ijm_A Uncharacterized restric 5.0 4.4E+02 0.015 24.7 3.1 18 270-287 112-129 (151)
2 2kv5_A FST, putative uncharact 4.5 5E+02 0.017 18.8 2.4 18 362-379 7-24 (33)
3 1e0n_A Hypothetical protein; Y 4.2 4.1E+02 0.014 17.8 1.7 16 266-281 7-22 (27)
4 3n57_C Atrial natriuretic fact 3.9 2.3E+02 0.0079 19.9 0.3 11 237-247 4-14 (28)
5 1fjk_A Cardiac phospholamban; 3.6 1.3E+03 0.046 17.8 4.3 46 1-46 1-49 (52)
6 1vf5_H Protein PET N; photosyn 3.6 5.3E+02 0.018 18.2 1.9 11 318-328 15-25 (29)
7 2k21_A Potassium voltage-gated 3.6 6.6E+02 0.022 23.3 3.1 19 307-325 57-75 (138)
8 1q90_N Cytochrome B6F complex 3.5 5.4E+02 0.019 18.4 1.9 12 317-328 16-27 (31)
9 2pbi_A Regulator of G-protein 3.3 4.4E+02 0.015 28.2 1.9 60 238-300 49-123 (424)
10 2bp3_S Platelet glycoprotein I 3.3 96 0.0033 21.1 -2.0 13 566-578 3-16 (26)
No 1
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=4.97 E-value=4.4e+02 Score=24.74 Aligned_cols=18 Identities=17% Similarity=0.648 Sum_probs=16.5
Q ss_pred ceeEEecccCeEeeeccc
Q 007070 270 QGYLYNCQTKEFYNLSYA 287 (619)
Q Consensus 270 kGYLrN~~TgE~y~lv~~ 287 (619)
.||+||..|++-++++.+
T Consensus 112 EGFVynYkt~~W~rYr~g 129 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLG 129 (151)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eeeeEeeccCceeEEEcC
Confidence 899999999999999864
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.49 E-value=5e+02 Score=18.83 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=12.8
Q ss_pred hhhhhHHhHHHHHHHHhc
Q 007070 362 LVFVPIMIGILFFLFEFY 379 (619)
Q Consensus 362 LVfvpvliGm~afmsEFF 379 (619)
++..|+.||++--|.+-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345688899987776654
No 3
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=4.18 E-value=4.1e+02 Score=17.83 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.9
Q ss_pred ccCCceeEEecccCeE
Q 007070 266 HTPGQGYLYNCQTKEF 281 (619)
Q Consensus 266 ~~~gkGYLrN~~TgE~ 281 (619)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3578889999999873
No 4
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=3.86 E-value=2.3e+02 Score=19.86 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.4
Q ss_pred CCCCCcchHHH
Q 007070 237 QHPCFGNRWQQ 247 (619)
Q Consensus 237 ~~~CFGd~~~r 247 (619)
.+.|||.+..|
T Consensus 4 ~~gCFG~riDR 14 (28)
T 3n57_C 4 RSSCFGGRMDR 14 (28)
T ss_pred cccccCccccc
Confidence 46899988765
No 5
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=3.64 E-value=1.3e+03 Score=17.76 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCccchHHHHHHHHhhh--cCcchhhHH-HHHHHHHHHHHHHHHHHhhh
Q 007070 1 MDPEHTFIRVQERFSRV--LTPRVRAYL-EYIYLFIAITLFCVLVVMHA 46 (619)
Q Consensus 1 ~~~~~~f~Rva~~Yar~--~p~~~Rr~i-Efl~L~~Ai~~f~vLvyiH~ 46 (619)
||--|-.-|-|.|-+-. +||..|+-+ |.++=+--|+...+|+||-+
T Consensus 1 mekvq~~trsairras~ie~~~qarqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 1 MDKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp CCSHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777775432 566666554 44444545555555666543
No 6
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=3.62 E-value=5.3e+02 Score=18.22 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=7.6
Q ss_pred HHHHhhhhhhh
Q 007070 318 TTMSVSFTLRE 328 (619)
Q Consensus 318 ~T~~VSflLR~ 328 (619)
||.++|++.+.
T Consensus 15 ftfSlslVVWG 25 (29)
T 1vf5_H 15 FTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred hheeeeEEEEe
Confidence 36688887664
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.60 E-value=6.6e+02 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 007070 307 VLMMSLFVFFTTTMSVSFT 325 (619)
Q Consensus 307 Vli~sLFvfF~~T~~VSfl 325 (619)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578889888877777664
No 8
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=3.52 E-value=5.4e+02 Score=18.41 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=8.0
Q ss_pred HHHHHhhhhhhh
Q 007070 317 TTTMSVSFTLRE 328 (619)
Q Consensus 317 ~~T~~VSflLR~ 328 (619)
+||+++|++.+-
T Consensus 16 vfTfSlslVVWG 27 (31)
T 1q90_N 16 MFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeEEEEEe
Confidence 336688887663
No 9
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=3.33 E-value=4.4e+02 Score=28.25 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhc---cCCceeEEeccc---------CeEeeecc--ccCCCCCCcccchh
Q 007070 238 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLSY--AQEPPEGPAKFGDY 300 (619)
Q Consensus 238 ~~CF-Gd~~~r~lL~~flGYDtILmnSl~~---~~gkGYLrN~~T---------gE~y~lv~--~~~~~~~~a~~~~y 300 (619)
..|| |..+..||++++ +.|+ --++.- --..||++.+.. +-.|||.. -|.+..|...=++|
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w~~~~~dy 123 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDY 123 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSCCCCHHHH
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCCCcchhHH
Confidence 4899 999999999988 5665 233321 134788887754 45788863 33333343332344
No 10
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=3.26 E-value=96 Score=21.12 Aligned_cols=13 Identities=62% Similarity=1.303 Sum_probs=7.9
Q ss_pred CCCchh-hHHHHHH
Q 007070 566 GSMNSF-SSLLLWI 578 (619)
Q Consensus 566 ~~~~~~-~~~~~~~ 578 (619)
||+-.| |||+||.
T Consensus 3 gslptfrsslflwv 16 (26)
T 2bp3_S 3 GSLPTFRSSLFLWV 16 (26)
T ss_pred ccccchhheEEEEE
Confidence 555555 5677775
Done!