Query 007070
Match_columns 619
No_of_seqs 94 out of 96
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 16:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1koza_ g.3.6.2 (A:) Grammotox 5.3 1.5E+02 0.011 19.7 1.8 19 49-67 10-29 (36)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.7 1.6E+02 0.012 18.9 1.7 16 266-281 9-24 (29)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 4.4 1.6E+02 0.012 18.8 1.5 16 266-281 8-23 (28)
4 d1hr6a2 d.185.1.1 (A:234-470) 4.1 88 0.0064 27.6 -0.0 29 574-604 45-81 (237)
5 d1uzva_ b.115.1.1 (A:) Fucose- 2.7 2.7E+02 0.019 23.1 1.7 13 66-78 60-72 (114)
6 d1krha2 c.25.1.2 (A:206-338) B 2.7 61 0.0044 25.9 -2.5 23 576-601 9-31 (133)
7 d2guka1 d.360.1.1 (A:4-114) Hy 2.5 2.6E+02 0.019 23.1 1.3 13 247-259 89-101 (111)
8 d2dk1a1 b.72.1.1 (A:7-44) WW d 2.4 3E+02 0.022 18.4 1.4 16 266-281 8-23 (38)
9 d2acya_ d.58.10.1 (A:) Acylpho 2.3 4.9E+02 0.036 19.8 2.7 33 254-286 20-52 (98)
10 d2axtm1 f.23.35.1 (M:1-36) Pho 2.3 3.6E+02 0.027 18.1 1.5 12 436-447 5-16 (36)
No 1
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=5.27 E-value=1.5e+02 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=12.7
Q ss_pred cCCCCcccccc-CCcccccc
Q 007070 49 VQQPGCSSEFA-GIRMTEAQ 67 (619)
Q Consensus 49 ~r~P~Cl~ev~-~i~wpr~g 67 (619)
+|.++|+-|+. ...|||..
T Consensus 10 sqtsdccphlackskwprni 29 (36)
T d1koza_ 10 SQTSDCCPHLACKSKWPRNI 29 (36)
T ss_dssp CSSSSSCTTEESCCSSSSSB
T ss_pred ccccccCcchhhcccCCcee
Confidence 46667888873 23699854
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.67 E-value=1.6e+02 Score=18.95 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 007070 266 HTPGQGYLYNCQTKEF 281 (619)
Q Consensus 266 ~~~gkGYLrN~~TgE~ 281 (619)
..+|+=|-||.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43 E-value=1.6e+02 Score=18.76 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.3
Q ss_pred ccCCceeEEecccCeE
Q 007070 266 HTPGQGYLYNCQTKEF 281 (619)
Q Consensus 266 ~~~gkGYLrN~~TgE~ 281 (619)
..+|+=|-+|.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 4
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.15 E-value=88 Score=27.55 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 007070 574 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 604 (619)
Q Consensus 574 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~ 604 (619)
+|==||||..+ +|..| ..|+.+|+. |.+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 55567887543 56676 478999984 5554
No 5
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.74 E-value=2.7e+02 Score=23.09 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.4
Q ss_pred cceEEEEEeccch
Q 007070 66 AQLIQIKISSAGK 78 (619)
Q Consensus 66 ~gIlRVEIi~~~~ 78 (619)
.|.|||||+-|++
T Consensus 60 ~GkVrieV~~nGk 72 (114)
T d1uzva_ 60 SGKVQVQVSVNGR 72 (114)
T ss_dssp TCEEEEEEEETTE
T ss_pred CceEEEEEEeCCc
Confidence 6899999998875
No 6
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=2.72 E-value=61 Score=25.86 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.2
Q ss_pred HHHhcCCCccchhhhhhhhhhhhccc
Q 007070 576 LWILGGASSEGLNSFLSMFRDVREQG 601 (619)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (619)
+||-||. |+.-|.||.|+.-+++
T Consensus 9 v~IAgG~---GItP~~s~l~~~~~~~ 31 (133)
T d1krha2 9 LMLAGGT---GIAPFLSMLQVLEQKG 31 (133)
T ss_dssp EEEEEGG---GHHHHHHHHHHHHHHC
T ss_pred EEEEccH---hHHHHHHHHHHHHHcC
Confidence 4555665 8888888888775544
No 7
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.53 E-value=2.6e+02 Score=23.13 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred HHHHHhhcCchHH
Q 007070 247 QLLINRFVGYDTI 259 (619)
Q Consensus 247 r~lL~~flGYDtI 259 (619)
.|+|..+||||.-
T Consensus 89 DFiLG~mLGYD~~ 101 (111)
T d2guka1 89 DFIIGAMLGYDIC 101 (111)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHhcccHH
Confidence 4899999999963
No 8
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.44 E-value=3e+02 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.1
Q ss_pred ccCCceeEEecccCeE
Q 007070 266 HTPGQGYLYNCQTKEF 281 (619)
Q Consensus 266 ~~~gkGYLrN~~TgE~ 281 (619)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3577889999999983
No 9
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.28 E-value=4.9e+02 Score=19.80 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=22.3
Q ss_pred cCchHHHHhhhhccCCceeEEecccCeEeeecc
Q 007070 254 VGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSY 286 (619)
Q Consensus 254 lGYDtILmnSl~~~~gkGYLrN~~TgE~y~lv~ 286 (619)
|||=...........=+||++|...|+..=...
T Consensus 20 VGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~q 52 (98)
T d2acya_ 20 VFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQ 52 (98)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEE
T ss_pred cCchHHHHHHHHHcCCEEEEEECCCCeEEEEEE
Confidence 455555545555445599999999997666554
No 10
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.27 E-value=3.6e+02 Score=18.09 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHH
Q 007070 436 YMALGTAAAFVQ 447 (619)
Q Consensus 436 yLAL~ts~lfi~ 447 (619)
.|++++++||+.
T Consensus 5 ~Lg~iAt~LFil 16 (36)
T d2axtm1 5 QLGLIATALFVL 16 (36)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999999987
Done!