Query 007071
Match_columns 619
No_of_seqs 105 out of 122
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 18:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04484 DUF566: Family of unk 100.0 5.7E-86 1.2E-90 680.9 31.0 307 257-580 1-311 (311)
2 PF15003 HAUS2: HAUS augmin-li 91.3 6.5 0.00014 41.8 14.8 142 446-593 44-194 (277)
3 cd07600 BAR_Gvp36 The Bin/Amph 90.4 12 0.00027 38.8 15.8 119 430-590 118-239 (242)
4 COG0497 RecN ATPase involved i 90.0 6.5 0.00014 45.4 14.5 79 417-503 130-215 (557)
5 TIGR01005 eps_transp_fam exopo 86.9 43 0.00093 39.4 18.9 75 429-505 170-249 (754)
6 KOG0978 E3 ubiquitin ligase in 86.3 20 0.00043 42.6 15.6 156 445-600 366-544 (698)
7 KOG0933 Structural maintenance 85.4 41 0.00089 41.6 17.7 178 419-607 210-405 (1174)
8 PF10455 BAR_2: Bin/amphiphysi 84.9 43 0.00093 36.0 16.0 98 451-590 187-284 (289)
9 TIGR03017 EpsF chain length de 84.3 68 0.0015 35.0 18.4 143 431-575 153-301 (444)
10 PRK09841 cryptic autophosphory 80.9 60 0.0013 38.4 16.9 74 431-504 249-322 (726)
11 TIGR03007 pepcterm_ChnLen poly 78.5 73 0.0016 35.4 15.7 57 445-503 157-214 (498)
12 PRK11519 tyrosine kinase; Prov 77.6 1.1E+02 0.0023 36.4 17.4 72 432-503 250-321 (719)
13 PRK11637 AmiB activator; Provi 74.1 1.5E+02 0.0032 32.8 18.8 36 443-478 83-118 (428)
14 TIGR00634 recN DNA repair prot 74.0 1.2E+02 0.0027 34.7 16.4 76 444-520 159-238 (563)
15 KOG3091 Nuclear pore complex, 72.6 72 0.0016 36.7 13.7 145 396-554 331-488 (508)
16 cd07619 BAR_Rich2 The Bin/Amph 72.3 1.4E+02 0.0029 31.6 17.0 135 421-589 83-224 (248)
17 KOG1853 LIS1-interacting prote 69.7 1.7E+02 0.0036 31.6 16.9 90 407-503 6-101 (333)
18 cd07683 F-BAR_srGAP1 The F-BAR 69.3 1.1E+02 0.0023 32.6 13.3 113 481-594 10-138 (253)
19 KOG4514 Uncharacterized conser 68.6 41 0.0009 34.3 9.7 47 528-574 161-207 (222)
20 cd07622 BAR_SNX4 The Bin/Amphi 66.8 1.5E+02 0.0033 30.0 14.1 69 481-552 47-115 (201)
21 cd07684 F-BAR_srGAP3 The F-BAR 66.7 1.6E+02 0.0034 31.4 13.8 101 493-594 29-137 (253)
22 cd07594 BAR_Endophilin_B The B 63.9 1.4E+02 0.0031 30.9 12.9 96 453-590 130-226 (229)
23 cd07593 BAR_MUG137_fungi The B 60.0 2E+02 0.0043 29.6 13.0 94 454-591 112-206 (215)
24 cd07592 BAR_Endophilin_A The B 60.0 1.7E+02 0.0036 30.3 12.5 30 562-591 185-214 (223)
25 cd07609 BAR_SIP3_fungi The Bin 58.8 1.2E+02 0.0026 31.2 11.2 102 484-588 5-121 (214)
26 cd07682 F-BAR_srGAP2 The F-BAR 56.7 2.8E+02 0.0061 29.8 13.8 101 493-593 29-136 (263)
27 PRK14011 prefoldin subunit alp 56.2 15 0.00034 35.4 4.2 57 515-571 49-124 (144)
28 KOG0933 Structural maintenance 56.0 1.1E+02 0.0024 38.1 11.8 77 448-527 398-474 (1174)
29 PF10157 DUF2365: Uncharacteri 55.1 92 0.002 30.5 9.2 82 502-587 64-146 (149)
30 cd01052 DPSL DPS-like protein, 54.3 82 0.0018 28.9 8.5 96 491-586 43-148 (148)
31 cd07617 BAR_Endophilin_B2 The 53.9 2.8E+02 0.006 28.9 12.9 89 451-590 128-217 (220)
32 cd07595 BAR_RhoGAP_Rich-like T 53.4 2.9E+02 0.0062 28.9 16.2 125 428-590 90-221 (244)
33 PRK10869 recombination and rep 52.9 4.2E+02 0.0091 30.7 18.5 68 447-520 158-234 (553)
34 cd07908 Mn_catalase_like Manga 49.7 1.6E+02 0.0035 27.6 9.8 54 532-586 101-154 (154)
35 COG5185 HEC1 Protein involved 49.3 2.4E+02 0.0053 32.8 12.4 179 409-603 133-360 (622)
36 KOG3647 Predicted coiled-coil 49.0 3.5E+02 0.0077 29.4 12.9 98 449-594 126-224 (338)
37 PLN03188 kinesin-12 family pro 48.3 2.6E+02 0.0056 35.9 13.5 52 455-506 1071-1127(1320)
38 COG1196 Smc Chromosome segrega 48.3 6.7E+02 0.015 31.7 17.8 58 416-473 224-284 (1163)
39 KOG3850 Predicted membrane pro 46.0 3.8E+02 0.0082 30.5 13.0 102 480-594 268-370 (455)
40 KOG0980 Actin-binding protein 45.8 7E+02 0.015 31.2 16.6 19 491-509 429-447 (980)
41 cd07677 F-BAR_FCHSD2 The F-BAR 43.0 2.6E+02 0.0057 29.8 11.0 87 487-573 5-105 (260)
42 PF10234 Cluap1: Clusterin-ass 42.6 2E+02 0.0044 30.7 10.1 71 443-515 177-247 (267)
43 cd07615 BAR_Endophilin_A3 The 42.3 4.2E+02 0.0091 27.6 12.1 57 532-591 158-214 (223)
44 PF08580 KAR9: Yeast cortical 41.6 1E+02 0.0022 36.9 8.5 20 476-495 4-23 (683)
45 PF09726 Macoilin: Transmembra 41.4 7.2E+02 0.016 30.1 16.8 23 529-551 553-575 (697)
46 cd07654 F-BAR_FCHSD The F-BAR 40.5 3.1E+02 0.0066 29.0 11.1 38 478-515 7-51 (264)
47 KOG0239 Kinesin (KAR3 subfamil 40.5 7.3E+02 0.016 29.9 15.8 33 442-474 175-207 (670)
48 PF04849 HAP1_N: HAP1 N-termin 40.4 5.3E+02 0.012 28.3 13.8 78 530-607 205-282 (306)
49 PF08580 KAR9: Yeast cortical 39.4 3.9E+02 0.0084 32.1 12.8 122 479-603 108-265 (683)
50 cd07666 BAR_SNX7 The Bin/Amphi 38.8 4.4E+02 0.0094 27.8 11.8 78 491-570 97-174 (243)
51 PRK11637 AmiB activator; Provi 38.1 5.9E+02 0.013 28.2 17.8 37 443-479 90-126 (428)
52 PF10267 Tmemb_cc2: Predicted 38.1 1.9E+02 0.0041 32.5 9.5 68 525-592 273-353 (395)
53 TIGR01010 BexC_CtrB_KpsE polys 37.7 5.4E+02 0.012 27.6 15.3 63 447-509 168-230 (362)
54 PF00210 Ferritin: Ferritin-li 37.3 2.9E+02 0.0063 24.3 13.6 103 490-592 35-142 (142)
55 PHA03332 membrane glycoprotein 36.9 4.9E+02 0.011 33.2 13.1 68 503-570 866-944 (1328)
56 KOG0996 Structural maintenance 36.4 1E+03 0.022 30.8 15.8 35 444-478 414-448 (1293)
57 PRK10304 ferritin; Provisional 36.2 2.8E+02 0.0061 27.1 9.4 87 496-599 47-133 (165)
58 PF06548 Kinesin-related: Kine 36.1 7E+02 0.015 28.9 13.4 52 455-506 293-357 (488)
59 PLN02939 transferase, transfer 36.0 7E+02 0.015 31.5 14.4 42 552-593 296-337 (977)
60 PF00015 MCPsignal: Methyl-acc 35.8 3.2E+02 0.0069 26.1 9.6 57 528-584 114-170 (213)
61 PF08654 DASH_Dad2: DASH compl 35.7 80 0.0017 29.1 5.2 34 461-494 2-35 (103)
62 PF05802 EspB: Enterobacterial 34.5 6.5E+02 0.014 27.6 16.2 46 528-573 154-199 (317)
63 cd07616 BAR_Endophilin_B1 The 34.2 5.7E+02 0.012 26.8 15.3 98 451-590 128-226 (229)
64 KOG0517 Beta-spectrin [Cytoske 33.0 1.3E+03 0.028 31.7 16.1 76 504-600 571-647 (2473)
65 cd07652 F-BAR_Rgd1 The F-BAR ( 32.6 5.7E+02 0.012 26.3 12.6 98 472-578 11-108 (234)
66 PF00015 MCPsignal: Methyl-acc 32.3 4.5E+02 0.0098 25.0 16.7 45 456-500 23-67 (213)
67 smart00055 FCH Fes/CIP4 homolo 32.0 2.4E+02 0.0051 23.7 7.3 55 489-550 29-83 (87)
68 PF13779 DUF4175: Domain of un 31.8 1.1E+03 0.023 29.2 16.5 152 429-589 437-614 (820)
69 PF15011 CK2S: Casein Kinase 2 31.6 5.2E+02 0.011 25.6 13.2 113 493-608 15-154 (168)
70 cd07613 BAR_Endophilin_A1 The 31.4 6.2E+02 0.014 26.4 11.9 40 547-590 173-213 (223)
71 PF13874 Nup54: Nucleoporin co 31.3 2.9E+02 0.0062 26.3 8.4 76 534-612 43-125 (141)
72 KOG2685 Cystoskeletal protein 31.1 7.8E+02 0.017 28.2 12.7 62 529-590 102-166 (421)
73 PF01865 PhoU_div: Protein of 31.1 2.5E+02 0.0053 27.7 8.2 92 492-587 46-138 (214)
74 KOG0989 Replication factor C, 30.8 5.4E+02 0.012 28.6 11.2 111 495-606 213-337 (346)
75 PRK12714 flgK flagellar hook-a 30.6 8.7E+02 0.019 28.7 13.8 65 529-593 135-208 (624)
76 PF04156 IncA: IncA protein; 30.4 5.1E+02 0.011 25.1 14.9 63 537-599 125-187 (191)
77 COG1196 Smc Chromosome segrega 30.2 1.2E+03 0.027 29.4 19.3 31 448-478 694-724 (1163)
78 COG1392 Phosphate transport re 30.2 4.3E+02 0.0093 27.2 10.0 74 512-588 67-141 (217)
79 cd07640 BAR_ASAP3 The Bin/Amph 30.2 6.6E+02 0.014 26.3 11.7 143 458-611 4-180 (213)
80 TIGR00754 bfr bacterioferritin 29.3 4.9E+02 0.011 24.5 10.4 96 500-597 52-149 (157)
81 PF07373 CAMP_factor: CAMP fac 28.9 7.1E+02 0.015 26.3 11.7 84 510-593 54-145 (228)
82 PRK00846 hypothetical protein; 28.8 2.7E+02 0.0059 24.6 7.1 44 438-481 9-52 (77)
83 PF08424 NRDE-2: NRDE-2, neces 28.2 7.5E+02 0.016 26.3 12.1 138 441-593 41-178 (321)
84 KOG0249 LAR-interacting protei 28.1 1.1E+03 0.023 29.2 13.7 35 448-482 155-189 (916)
85 KOG1969 DNA replication checkp 27.8 2.6E+02 0.0057 34.2 8.8 143 426-572 510-704 (877)
86 PF14712 Snapin_Pallidin: Snap 27.8 3.1E+02 0.0067 23.7 7.4 52 541-592 6-57 (92)
87 KOG0976 Rho/Rac1-interacting s 27.6 1.3E+03 0.029 29.0 16.1 79 509-593 394-472 (1265)
88 PF04048 Sec8_exocyst: Sec8 ex 26.7 5.5E+02 0.012 24.3 9.4 86 493-588 11-104 (142)
89 PRK02793 phi X174 lysis protei 26.6 3E+02 0.0065 23.7 6.9 43 440-482 6-48 (72)
90 cd07678 F-BAR_FCHSD1 The F-BAR 26.3 6.8E+02 0.015 26.7 10.9 76 480-555 9-92 (263)
91 COG3206 GumC Uncharacterized p 26.2 9.4E+02 0.02 26.8 17.4 139 432-571 178-328 (458)
92 PF13339 AATF-Che1: Apoptosis 25.7 1.4E+02 0.003 27.7 5.1 88 402-496 1-129 (131)
93 PF13514 AAA_27: AAA domain 25.6 1.4E+03 0.031 28.7 15.0 145 456-611 181-327 (1111)
94 PRK08871 flgK flagellar hook-a 25.5 5.5E+02 0.012 30.5 11.0 66 528-593 137-210 (626)
95 TIGR01063 gyrA DNA gyrase, A s 25.3 3.3E+02 0.0072 33.1 9.4 40 450-490 338-377 (800)
96 cd00187 TOP4c DNA Topoisomeras 25.2 3.8E+02 0.0082 30.5 9.3 46 452-498 318-363 (445)
97 KOG0579 Ste20-like serine/thre 24.9 1.4E+03 0.03 28.4 15.9 129 471-599 984-1120(1187)
98 KOG0994 Extracellular matrix g 24.8 1.4E+03 0.03 29.9 14.2 43 539-581 1581-1626(1758)
99 PRK09631 DNA topoisomerase IV 24.7 6.2E+02 0.013 30.3 11.1 29 460-488 318-347 (635)
100 PF02252 PA28_beta: Proteasome 24.6 4.4E+02 0.0096 25.8 8.5 35 530-564 15-49 (150)
101 PRK03947 prefoldin subunit alp 24.4 5.8E+02 0.013 23.7 11.4 14 515-528 55-68 (140)
102 TIGR00996 Mtu_fam_mce virulenc 24.3 4.9E+02 0.011 26.8 9.4 28 532-559 231-258 (291)
103 PF06160 EzrA: Septation ring 24.3 1.2E+03 0.025 27.2 15.4 107 443-559 387-496 (560)
104 PRK04863 mukB cell division pr 24.0 1.8E+03 0.039 29.3 18.1 37 440-476 291-327 (1486)
105 cd07673 F-BAR_FCHO2 The F-BAR 24.0 8.6E+02 0.019 25.6 13.0 94 489-593 32-126 (269)
106 KOG2307 Low density lipoprotei 24.0 1.3E+03 0.029 27.7 15.6 118 430-562 76-197 (705)
107 PF04168 Alpha-E: A predicted 23.9 8.2E+02 0.018 25.8 11.1 63 451-524 194-256 (311)
108 PF07412 Geminin: Geminin; In 23.9 1.6E+02 0.0035 30.3 5.6 46 449-494 118-163 (200)
109 COG1463 Ttg2C ABC-type transpo 23.7 5.2E+02 0.011 28.1 9.7 56 535-590 239-295 (359)
110 cd07624 BAR_SNX7_30 The Bin/Am 23.6 7.4E+02 0.016 24.7 14.1 76 491-568 57-132 (200)
111 KOG0161 Myosin class II heavy 23.4 2E+03 0.044 29.7 18.7 97 487-593 1439-1539(1930)
112 KOG2273 Membrane coat complex 23.1 1.1E+03 0.024 26.6 14.5 25 476-500 302-326 (503)
113 PF15556 Zwint: ZW10 interacto 23.1 7.7E+02 0.017 26.0 10.1 37 557-593 156-192 (252)
114 PRK04406 hypothetical protein; 22.9 4.3E+02 0.0092 23.0 7.2 44 439-482 8-51 (75)
115 KOG0250 DNA repair protein RAD 22.5 1.7E+03 0.037 28.5 17.4 23 414-436 252-280 (1074)
116 PRK05685 fliS flagellar protei 21.8 5.2E+02 0.011 24.3 8.2 64 528-591 49-119 (132)
117 COG1792 MreC Cell shape-determ 21.7 2.4E+02 0.0052 30.0 6.6 72 533-604 36-107 (284)
118 TIGR00208 fliS flagellar biosy 21.6 5E+02 0.011 24.2 8.0 61 528-590 45-114 (124)
119 PF05781 MRVI1: MRVI1 protein; 21.5 1.1E+03 0.024 27.8 12.1 28 562-589 298-325 (538)
120 PF05769 DUF837: Protein of un 21.3 8.5E+02 0.018 24.5 13.4 96 493-603 81-176 (181)
121 TIGR02568 LcrE type III secret 21.2 5.3E+02 0.012 26.6 8.8 99 431-530 15-116 (240)
122 PRK15041 methyl-accepting chem 21.0 6.7E+02 0.015 28.6 10.4 43 532-574 444-486 (554)
123 PF03564 DUF1759: Protein of u 20.9 2.8E+02 0.0061 25.5 6.1 64 487-551 52-116 (145)
124 PRK13922 rod shape-determining 20.8 7.7E+02 0.017 25.5 10.0 62 540-601 43-107 (276)
125 PRK01203 prefoldin subunit alp 20.4 95 0.0021 29.9 3.0 13 515-527 48-60 (130)
126 PF13335 Mg_chelatase_2: Magne 20.4 88 0.0019 28.0 2.6 51 459-513 6-58 (96)
127 PF04136 Sec34: Sec34-like fam 20.3 5.9E+02 0.013 24.8 8.4 58 542-599 7-68 (157)
128 PRK04325 hypothetical protein; 20.2 4.6E+02 0.01 22.6 6.9 43 440-482 7-49 (74)
129 PRK06665 flgK flagellar hook-a 20.1 7.5E+02 0.016 29.3 10.7 65 529-593 147-222 (627)
No 1
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=100.00 E-value=5.7e-86 Score=680.92 Aligned_cols=307 Identities=55% Similarity=0.770 Sum_probs=258.7
Q ss_pred CccccCCCCCCCCCCCCCcccccccCCCcceeeeccccccc-cccccccCCCCCCCCCCCCCCCCCCCc-ccccccccCC
Q 007071 257 DSVSSGSTNTSGVPESGGALASRMKNGARGIIVSARFWQET-NSRLRRLQDPGSPLSTSPGSRTSNPSK-FLQSKRFSSD 334 (619)
Q Consensus 257 ~svsSgs~~~sg~~~~~~~~~s~~~~~~rg~~v~ARf~q~~-~sR~rRl~~p~s~~~~~~~~~~~~~~k-~~~~kk~~~~ 334 (619)
|+|+||++ +|..+.+.+.+ ++....+ ||||++ ++|.+++++|++++.+.+......+.. .....+...
T Consensus 1 ~svsS~st--s~~~~~~~~~s------~r~~~~~-r~~~~~~~sr~~~~~~~~s~~~s~~~~~~~s~s~~~~~~~~~~s- 70 (311)
T PF04484_consen 1 DSVSSGST--SGSQSPPRRVS------RRRLSSS-RFWQESTRSRSRRLSDPSSPRSSSPSSPTSSSSSNSSSRSNSKS- 70 (311)
T ss_pred CCcCCCCC--CCCCCCCCCCC------CCCCCCc-cccccccCCcccccCCCCCCCCCCCCccccCCCccccccccccc-
Confidence 57899988 77776554322 2222223 999997 999999999999988877666544444 121211111
Q ss_pred CCCcCCCCcccCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCccccchhhccccCCCccc
Q 007071 335 SAVSTPPRTMASPIRGA--NRPSSPNKSWNTPCMSPSRGIPSPARVRNGVGGILSGNSSNTPSILSFSVDLKRGKMGEDR 412 (619)
Q Consensus 335 ~~~sss~r~~~SP~r~~--~rp~SPsk~~~~s~~spsR~~~SPsR~r~~v~~~~s~~~~~~~sils~~~D~rkgKk~~~~ 412 (619)
......++|+.||+|.. ..+.+|+++..+ ..+..++|+|.|+.+... +.++.++|++|+.|++||||+++|
T Consensus 71 ~~~~~~ss~~~Sp~r~~~~~~~~~~~~~~~~----s~~~~~sPsr~r~~~~~~---~~~~~~si~s~~~d~~rgkk~~~~ 143 (311)
T PF04484_consen 71 LPGGSLSSWALSPSRSSSSSSPSSPSSLSTS----SSSPSSSPSRSRRSTSSG---QSNSGPSILSFAADVRRGKKGASQ 143 (311)
T ss_pred ccCCcCCcCCCCCCCCCCCCCCCCCCccccC----CCCCCCCCCCCCCCCCcc---cCCCCcccccccccccccccCcch
Confidence 12223467778999863 233444444332 223333899999765432 668899999999999999999999
Q ss_pred hhhhhhhhhhhcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccCh
Q 007071 413 IVDAHMLRLLHNRYLQWRFVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYL 492 (619)
Q Consensus 413 ~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L 492 (619)
+||+|||||||||||||||||||||+++++|+.+||++||++|++|++||++|++||||||++||++||++||++||+||
T Consensus 144 ~Ed~H~LRLLhNR~LQWRFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q~~~L 223 (311)
T PF04484_consen 144 IEDAHQLRLLHNRLLQWRFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQMPYL 223 (311)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 007071 493 EEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVT 572 (619)
Q Consensus 493 EeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va 572 (619)
|+|+.||++|+++|++++|||+|++|||||++|||+|+++|++||++||||||+|+++||+|+||||+|++||+||++|+
T Consensus 224 e~W~~le~~h~~sl~~~~~aL~a~~lrlP~~~ga~~d~~~l~~al~sAvdvm~~i~ssi~~l~pk~e~~~~l~seLa~v~ 303 (311)
T PF04484_consen 224 EEWAALEREHSSSLSGATEALKASTLRLPVTGGAKADVQSLKEALSSAVDVMQAIESSICSLLPKVEETSSLVSELARVA 303 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceecHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007071 573 AKEMALLE 580 (619)
Q Consensus 573 ~qE~~lLe 580 (619)
+||++|||
T Consensus 304 ~~E~~ll~ 311 (311)
T PF04484_consen 304 AQERALLE 311 (311)
T ss_pred HHHHHhcC
Confidence 99999986
No 2
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=91.29 E-value=6.5 Score=41.80 Aligned_cols=142 Identities=13% Similarity=0.249 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhh---hhhhHHHHHHHHHhc----c-
Q 007071 446 NAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKD---HTNSLLGATEALKAS----T- 517 (619)
Q Consensus 446 ~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~e---hsssLs~a~eaL~Aa----t- 517 (619)
..+.+||..-..|..|+..+.++.+|+|+++.+..-.+|++. .||++=...=.. |..++..=.+.|-+- .
T Consensus 44 ~~s~~l~s~L~QIt~iQaeI~q~nlEielLkleKeTADltH~--~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~ 121 (277)
T PF15003_consen 44 EKSSDLFSRLRQITNIQAEIDQLNLEIELLKLEKETADLTHP--DYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYC 121 (277)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhCH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 345678999999999999999999999999999999888753 455433222222 333333322222221 1
Q ss_pred -cccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 518 -LRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 518 -lRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
-.|||..-..- .+.+-|..|+.-|+.+...+..+-- .-.+..-+..+..+.++=-.+|-||++|...+..+.
T Consensus 122 qe~LPVEA~yHr---~vVeLL~laa~fi~~Le~~LetIrw-ip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ilkwR 194 (277)
T PF15003_consen 122 QENLPVEAQYHR---YVVELLELAASFIEKLEEHLETIRW-IPNFDENPSNMDKALAKIDALVAECEELAEQILKWR 194 (277)
T ss_pred hcCccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555322222 3444444455555555544442210 111233345666666666778899999999888775
No 3
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.44 E-value=12 Score=38.85 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhH
Q 007071 430 RFVNARADATFMVQQLN---AEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSL 506 (619)
Q Consensus 430 RFaNARAeaa~~~q~~~---AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssL 506 (619)
+.++||-+--..++..= -+..|..-|..|.+.|+.|..+|+.+...|.++|-..--..+-.+=++-...|.++..
T Consensus 118 kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~-- 195 (242)
T cd07600 118 KIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVS-- 195 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH--
Confidence 55555555444444322 2345666888999999999999999999998774321000010011111122222221
Q ss_pred HHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 507 LGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFS 586 (619)
Q Consensus 507 s~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL 586 (619)
+-..|+.+|+.|... ...+.+|...+.-+....++|.++|
T Consensus 196 -----------------------------a~E~a~~~M~~il~~-----------~e~i~~L~~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 196 -----------------------------ATEEAVELMKEVLDN-----------PEPLQLLKELVKAQLAYHKTAAELL 235 (242)
T ss_pred -----------------------------hHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455566655333 2368888899999999999999999
Q ss_pred HHHH
Q 007071 587 STLS 590 (619)
Q Consensus 587 ~~~a 590 (619)
..+.
T Consensus 236 ~~l~ 239 (242)
T cd07600 236 EELL 239 (242)
T ss_pred HHHh
Confidence 8764
No 4
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.01 E-value=6.5 Score=45.41 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=40.6
Q ss_pred hhhhhhhcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccCh----
Q 007071 417 HMLRLLHNRYLQWRFVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYL---- 492 (619)
Q Consensus 417 HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L---- 492 (619)
|.=..|-+--.|-.+..+.+......+ .+-...|..|..+.+-..-...+.-++++ ....|.-|+.-|
T Consensus 130 h~~q~Ll~~~~~r~lLD~f~~~~~~~~--~~~~~~y~~w~~~~~~l~~~~~~~~e~~~------~~d~L~fq~~Ele~~~ 201 (557)
T COG0497 130 HEHQSLLKPELQRQLLDAFAGLEELAQ--EAYQEAYQAWKQARRELEDLQEKERERAQ------RADLLQFQLEELEELN 201 (557)
T ss_pred chHHHhcChHHHHHHHHHhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcC
Confidence 333344444445555555555544444 34467899998876544433333322221 223344444333
Q ss_pred ---hhHHhhhhhhh
Q 007071 493 ---EEWALLDKDHT 503 (619)
Q Consensus 493 ---EeW~~LE~ehs 503 (619)
.||..|+.+|.
T Consensus 202 l~~gE~e~L~~e~~ 215 (557)
T COG0497 202 LQPGEDEELEEERK 215 (557)
T ss_pred CCCchHHHHHHHHH
Confidence 47888887754
No 5
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.85 E-value=43 Score=39.38 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccCh-hhHHhhhhhhh
Q 007071 429 WRFVNARADATF----MVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYL-EEWALLDKDHT 503 (619)
Q Consensus 429 WRFaNARAeaa~----~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L-EeW~~LE~ehs 503 (619)
=+++|+=+++=+ ..+...+.+.+-++..++.+||+.+.+...+|+..|++.++... .. ..+. ++...|+.+..
T Consensus 170 a~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~-~~-~~~~~~~L~~l~~ql~ 247 (754)
T TIGR01005 170 AAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG-NN-ATLATQQLAELNTELS 247 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-CC-ccchHHHHHHHHHHHH
Confidence 345666555544 34455566778888999999999999999999999999888653 22 2222 56666666655
Q ss_pred hh
Q 007071 504 NS 505 (619)
Q Consensus 504 ss 505 (619)
.+
T Consensus 248 ~a 249 (754)
T TIGR01005 248 RA 249 (754)
T ss_pred HH
Confidence 43
No 6
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=20 Score=42.62 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=101.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHH--------HhHHHhHHhhccc--ChhhHHh---hhhhhhhhHHHH
Q 007071 445 LNAEKNIWN-AWVTISELRNSVTLKRIKLL-LVKK--------KLKLTSILKGQFP--YLEEWAL---LDKDHTNSLLGA 509 (619)
Q Consensus 445 ~~AE~~Ly~-~W~~is~LR~sVa~KRieLq-~lkq--------~~KL~~IL~~Qm~--~LEeW~~---LE~ehsssLs~a 509 (619)
..++..|+. +|..+..|...--..+.+|| ++++ ..++...-..-+. -+++|.. ....++..|...
T Consensus 366 ~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~ 445 (698)
T KOG0978|consen 366 LVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKK 445 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 344555555 99988887766655555555 3333 3334444444444 7788877 777889999999
Q ss_pred HHHHHhcccccccCCCcccchHH--------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007071 510 TEALKASTLRLPVVGKAIADVQN--------LKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQ 581 (619)
Q Consensus 510 ~eaL~AatlRLPv~~GAkaD~~s--------lk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeE 581 (619)
.+...+..-.++++|+|.-|+|+ +.++-.-...+|-+-..+-..+---.++...+-.++..+..+...+...
T Consensus 446 ~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 446 EKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 4556666777887666544443333455555556666666666666665
Q ss_pred HHHHHHHHHhhHHHhhhhh
Q 007071 582 CKDFSSTLSALQIKDCSLR 600 (619)
Q Consensus 582 C~eLL~~~a~LqVeE~SLR 600 (619)
-+.|=-....|+-.+..|-
T Consensus 526 i~~leeq~~~lt~~~~~l~ 544 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLI 544 (698)
T ss_pred HHHHHHHHHHhhHhhhhhH
Confidence 5555555555554444443
No 7
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=41 Score=41.61 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=110.1
Q ss_pred hhhhhcchhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 419 LRLLHNRYLQWRFVNARADA----TFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 419 LRLLhNRlLQWRFaNARAea----a~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
||==--+||+|+-+|+--|- ..+++..++|...-..-+.|.++.+.++..--++++..++++ .|+.++.-+++
T Consensus 210 LR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~---~le~~ikei~~ 286 (1174)
T KOG0933|consen 210 LREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIE---SLEKEIKEIEQ 286 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHH
Confidence 33344679999988876654 456777888888888888888888888776666655555543 45666665544
Q ss_pred HHhhhhhhh---hhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhHH
Q 007071 495 WALLDKDHT---NSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-------MNSL 564 (619)
Q Consensus 495 W~~LE~ehs---ssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-------~~~l 564 (619)
= -|.+|. .+|+.....+.+...|. ..++...++.|..--.-.+.|...|..+--++.+ +...
T Consensus 287 ~--rd~em~~~~~~L~~~~~~~~~~~tr~------~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~ 358 (1174)
T KOG0933|consen 287 Q--RDAEMGGEVKALEDKLDSLQNEITRE------ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEG 358 (1174)
T ss_pred H--HHHHhchhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh
Confidence 2 222332 34444444555544443 2344455555555555566666666555444333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----Hhhhhhhhhhhhc
Q 007071 565 TAELMSVTAKEMALLEQCKDFSSTLSALQI----KDCSLRTHIIQRN 607 (619)
Q Consensus 565 vSELa~Va~qE~~lLeEC~eLL~~~a~LqV----eE~SLR~~liQ~~ 607 (619)
...|.+--..-..+|++|++++..+.+.-. +|.+|-.||+-.+
T Consensus 359 ~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK 405 (1174)
T KOG0933|consen 359 YEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAK 405 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHH
Confidence 444666666777899999999999887642 5666666665443
No 8
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=84.88 E-value=43 Score=35.99 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccch
Q 007071 451 IWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADV 530 (619)
Q Consensus 451 Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~ 530 (619)
|-.-...+.++|+.|..+|+++.-+|.++|.. .-+-.++ .+...+|.++-
T Consensus 187 Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~-----~~pekee----------~~r~~lE~aED--------------- 236 (289)
T PF10455_consen 187 LNTDFKKANKARKKVENSRLQFDAARANLKNK-----AKPEKEE----------QLRVELEQAED--------------- 236 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCcccCH----------HHHHHHHHHHH---------------
Confidence 44444567789999999999999999998875 0111111 11111222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 531 QNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 531 ~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
++..+...||.+|+.|. +-...+..|...+.-..+..+.|-++|..+.
T Consensus 237 -eFv~aTeeAv~~Mk~vl-----------~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~ 284 (289)
T PF10455_consen 237 -EFVSATEEAVEVMKEVL-----------DNSEPLRLLKELVKAQLEYHKKAAEALSELL 284 (289)
T ss_pred -HHHHHHHHHHHHHHHHh-----------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777754 3355667788888889999999999998764
No 9
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.28 E-value=68 Score=34.96 Aligned_cols=143 Identities=19% Similarity=0.134 Sum_probs=85.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccCh-hhHHhhhhhhhhhHHHH
Q 007071 431 FVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYL-EEWALLDKDHTNSLLGA 509 (619)
Q Consensus 431 FaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L-EeW~~LE~ehsssLs~a 509 (619)
|+++.-+..+..+...+++.+=++...+.++++.+....-+|+..|++.++..+ ..|..+. ++-..|+.+...+-...
T Consensus 153 ~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~-~~~~~~~~~~l~~l~~~l~~~~~~~ 231 (444)
T TIGR03017 153 FAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSS-DERLDVERARLNELSAQLVAAQAQV 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-CcccchHHHHHHHHHHHHHHHHHHH
Confidence 444555555566677777888888999999999999999999999999988754 3333332 33444444433222222
Q ss_pred HHHHHh---c--ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 007071 510 TEALKA---S--TLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKE 575 (619)
Q Consensus 510 ~eaL~A---a--tlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE 575 (619)
.++..- . ..-+|-. ..-..++.++.-|.....-+.++......-.|+|.++...+.+|-.-..+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 232 MDASSKEGGSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAE 301 (444)
T ss_pred HHHHHHHhccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 211110 0 0001211 011224456666666666666676666777777777776666665554444
No 10
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.95 E-value=60 Score=38.40 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=58.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhh
Q 007071 431 FVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTN 504 (619)
Q Consensus 431 FaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehss 504 (619)
++++.-+..+..+...+++.+=++..++.++++.+....-+|+..|++.++..+-.....+|++-..||.+...
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555566777788888999999999999999999999999999999998876544444567777777776554
No 11
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.47 E-value=73 Score=35.40 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhccc-ChhhHHhhhhhhh
Q 007071 445 LNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFP-YLEEWALLDKDHT 503 (619)
Q Consensus 445 ~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~-~LEeW~~LE~ehs 503 (619)
..++..+=++...+.+++..+.+..-+|+..|++..+. +..|.. +.++-..++.+..
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~~~~~~~~l~~l~~~l~ 214 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQEGDYYSEISEAQEELE 214 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--CccchhhHHHHHHHHHHHHH
Confidence 33444556677888999999999999999988887653 333333 4455555555544
No 12
>PRK11519 tyrosine kinase; Provisional
Probab=77.60 E-value=1.1e+02 Score=36.40 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhh
Q 007071 432 VNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHT 503 (619)
Q Consensus 432 aNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehs 503 (619)
+++.-+..+..+...+++.+=++..++.+++..+....-+|+..|++.++..+-..-...|+.-..++.+..
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~ 321 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLN 321 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 444455556667777888999999999999999999999999999998876543332335555555555443
No 13
>PRK11637 AmiB activator; Provisional
Probab=74.11 E-value=1.5e+02 Score=32.82 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 443 QQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKK 478 (619)
Q Consensus 443 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 478 (619)
+...++..|-.....|.++...+....-+|..++.+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555444444444
No 14
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.97 E-value=1.2e+02 Score=34.70 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHhHHhhcccChhhHHhhhhhhh--hhHHHHHHHHHhcccc
Q 007071 444 QLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKK--LKLTSILKGQFPYLEEWALLDKDHT--NSLLGATEALKASTLR 519 (619)
Q Consensus 444 ~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~--~KL~~IL~~Qm~~LEeW~~LE~ehs--ssLs~a~eaL~AatlR 519 (619)
....-+.+|..|..+.+.-+....+.-++++.... .+|..|-.... --.+|..||.+|. .....+.+++..+.-.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l-~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~ 237 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL-QPGEDEALEAEQQRLSNLEKLRELSQNALAA 237 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc-CCCcHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44455667888877766544443333333222222 22334333333 2467888888764 3333444444444333
Q ss_pred c
Q 007071 520 L 520 (619)
Q Consensus 520 L 520 (619)
|
T Consensus 238 L 238 (563)
T TIGR00634 238 L 238 (563)
T ss_pred H
Confidence 3
No 15
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.60 E-value=72 Score=36.74 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=82.6
Q ss_pred cccchh-hccccCCCccchhhhhhhhhhh--cchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 007071 396 ILSFSV-DLKRGKMGEDRIVDAHMLRLLH--NRYLQWRFVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKR--- 469 (619)
Q Consensus 396 ils~~~-D~rkgKk~~~~~Ed~HqLRLLh--NRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KR--- 469 (619)
|+-++. |+++.-|.-.++-+.|++||=+ +++=+- + +-++...++.+++.+.+-.+-+||..+=-.+.-.|
T Consensus 331 VpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eL---q-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G 406 (508)
T KOG3091|consen 331 VPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTEL---Q-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRG 406 (508)
T ss_pred eeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444 8988888888888889888743 333221 2 55556666777777888888888877643333222
Q ss_pred --HHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHh--cccccccCCCcccchHH---HHHHHHHHHH
Q 007071 470 --IKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKA--STLRLPVVGKAIADVQN---LKDAISSALD 542 (619)
Q Consensus 470 --ieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~A--atlRLPv~~GAkaD~~s---lk~AL~sAvd 542 (619)
|.-...+...||+.||..=-..=|-|+-|.. +.|-+++ .-++++.. -.+|-+. +++-|..=.|
T Consensus 407 ~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~--------L~e~~r~q~~~~~~~~~--~~iD~~~~~e~~e~lt~~~e 476 (508)
T KOG3091|consen 407 YALTPDEEELRAKLDTLLAQLNAPNQLKARLDE--------LYEILRMQNSQLKLQES--YWIDFDKLIEMKEHLTQEQE 476 (508)
T ss_pred CcCCccHHHHHHHHHHHHHHhcChHHHHHHHHH--------HHHHHHhhcchhccccc--eeechhhhHHHHHHHHHHHH
Confidence 4444556667888887644344555655543 3333333 35565553 2345443 4444444444
Q ss_pred HHHHHHHHHHhh
Q 007071 543 VMQAMASSICLL 554 (619)
Q Consensus 543 vMq~i~ssi~~l 554 (619)
.|.-|..++...
T Consensus 477 ~l~~Lv~Ilk~d 488 (508)
T KOG3091|consen 477 ALTKLVNILKGD 488 (508)
T ss_pred HHHHHHHHHHhH
Confidence 444444444443
No 16
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.32 E-value=1.4e+02 Score=31.64 Aligned_cols=135 Identities=7% Similarity=0.023 Sum_probs=81.7
Q ss_pred hhhcchhhHHHHHHhHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHh
Q 007071 421 LLHNRYLQWRFVNARADATFMVQQLNAEK--N-IWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWAL 497 (619)
Q Consensus 421 LLhNRlLQWRFaNARAeaa~~~q~~~AE~--~-Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~ 497 (619)
|..+=..|=+.++++.+--+.++..--.- + |=.-|..|.+-|+.|..+|+.+...|..+|=. .|
T Consensus 83 L~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a-----------~~-- 149 (248)
T cd07619 83 LKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQS-----------SK-- 149 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhc-----------cc--
Confidence 44444455566666665554443322221 1 12345677888888999998888877766510 11
Q ss_pred hhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhhhHHHHHHHHHHH
Q 007071 498 LDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAM----ASSICLLSSKVENMNSLTAELMSVTA 573 (619)
Q Consensus 498 LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i----~ssi~~llpKvee~~~lvSELa~Va~ 573 (619)
.+. +. -.. ++-++..++|++++..|.|-|+.. ...+.+|+.++.+....+.+| +.
T Consensus 150 ----~~~---~~----------~~~-~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~L---v~ 208 (248)
T cd07619 150 ----SSG---LS----------SNL-QPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTL---IE 208 (248)
T ss_pred ----ccc---cc----------ccc-cCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 000 00 000 112344589999999999999944 899999999999877664444 44
Q ss_pred HHHHHHHHHHHHHHHH
Q 007071 574 KEMALLEQCKDFSSTL 589 (619)
Q Consensus 574 qE~~lLeEC~eLL~~~ 589 (619)
--.....++-++|..+
T Consensus 209 AQleYHr~A~eiLe~l 224 (248)
T cd07619 209 VQAEYHRKSLELLQSV 224 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666666665544
No 17
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.68 E-value=1.7e+02 Score=31.57 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCccchhhhhhhhhhhcchhhHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007071 407 KMGEDRIVDAHMLRLLHNRYLQWRFVNARADATFMVQQL------NAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLK 480 (619)
Q Consensus 407 Kk~~~~~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~------~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K 480 (619)
|--..-.|+..--.+||--|+| +|.|+|-|-. .+|+- .-|.+|-.+-.++-+|-.-+.+.+.|++.+|.+..
T Consensus 6 ~~fss~~eE~~ywk~l~~~ykq-~f~~~reEl~-EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 6 KTFSSDLEEDQYWKLLHHEYKQ-HFLQMREELN-EFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred ccccchhhHHHHHhhhHHHHHH-HHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677778999999998 6999986643 23332 23345666666666666667777777776665543
Q ss_pred HHhHHhhcccChhhHHhhhhhhh
Q 007071 481 LTSILKGQFPYLEEWALLDKDHT 503 (619)
Q Consensus 481 L~~IL~~Qm~~LEeW~~LE~ehs 503 (619)
-..+ .+..+-++||++.+
T Consensus 84 ~q~~-----q~y~q~s~Leddls 101 (333)
T KOG1853|consen 84 DQRV-----QFYQQESQLEDDLS 101 (333)
T ss_pred HHHH-----HHHHHHHHHHHHHH
Confidence 3322 23355677777755
No 18
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=69.33 E-value=1.1e+02 Score=32.60 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHhHHhhcccChhh-------HHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH-
Q 007071 481 LTSILKGQFPYLEE-------WALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSIC- 552 (619)
Q Consensus 481 L~~IL~~Qm~~LEe-------W~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~- 552 (619)
|+.-.+.|+.+|++ =+.||.||+-+|..+.+-+..-.-..+=.-..+-|.- ....+..=-+||+.....-.
T Consensus 10 ld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~-~~S~~~~W~~lL~qT~~~sk~ 88 (253)
T cd07683 10 LEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQN-LLSPVNCWYLLLNQVRRESKD 88 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcc-hhhHHHHHHHHHHHHHHHHHH
Confidence 33344444544444 4899999999999999999886532221111122211 11111111222222222211
Q ss_pred ------hhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHH
Q 007071 553 ------LLSS-KVENMNSLTAELMSVTAKEMALLEQCK-DFSSTLSALQI 594 (619)
Q Consensus 553 ------~llp-Kvee~~~lvSELa~Va~qE~~lLeEC~-eLL~~~a~LqV 594 (619)
.|.- -+..+.....++++++.+=+++.-+|. |||..+..||.
T Consensus 89 h~~LSd~y~~~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t 138 (253)
T cd07683 89 HATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYT 138 (253)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 123344567777777777777766775 57777788873
No 19
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.64 E-value=41 Score=34.29 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAK 574 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~q 574 (619)
.++|--.+|+.++-|.+++=.-+.+.||-|+||++..+--.-..++|
T Consensus 161 ~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~ksm~pv~~La~q 207 (222)
T KOG4514|consen 161 DNVQVYRNAVNKLTDTLDANIKCQYQLLAKAEEITKSMKPVEQLAQQ 207 (222)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34566788999999999999999999999999999887655555444
No 20
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=66.75 E-value=1.5e+02 Score=29.97 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 007071 481 LTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSIC 552 (619)
Q Consensus 481 L~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~ 552 (619)
|...+..=-+-+..|+.+|.+...+|.++-.|+.+ +--.+...+.. .+.+.+.|...+...+.|...+.
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~--~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk 115 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDS--YAASIDNGLED-EELIADQLKEYLFFADSLRAVCK 115 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444456789999999888887777777766 33333332222 25566666666666666655544
No 21
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=66.67 E-value=1.6e+02 Score=31.44 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=51.4
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccc------hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHH
Q 007071 493 EEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIAD------VQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLT 565 (619)
Q Consensus 493 EeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD------~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lv 565 (619)
-+=+.||.||+-.|..+.+-+..-.-..+..- .+.| +.--...|.+-..+-..=...-..|.-.+-. +....
T Consensus 29 RrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~-s~~d~~~~Sp~~~W~~lL~QT~~iskdh~~LSd~y~~~~~~rl~~~~ 107 (253)
T cd07684 29 RRKAEIELEYSRSLEKLAERFSSKIRTSREHQ-FKKDQQLLSPVNCWYLVLEQTRRESRDHATLNDIFNNNVIVRLSQIS 107 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccc-ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33489999999999999999866533333211 1122 1112222222222222211111122221211 22222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhHH
Q 007071 566 AELMSVTAKEMALLEQCK-DFSSTLSALQI 594 (619)
Q Consensus 566 SELa~Va~qE~~lLeEC~-eLL~~~a~LqV 594 (619)
-++++++.+=+++.-+|. |||..+..||.
T Consensus 108 ed~~Ri~kkskEi~~~~~eeLlkV~~EL~t 137 (253)
T cd07684 108 EDVIRLFKKSKEIGLQMHEELLKVTNELYT 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266777777777666664 57777888874
No 22
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=63.85 E-value=1.4e+02 Score=30.95 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHH
Q 007071 453 NAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQN 532 (619)
Q Consensus 453 ~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~s 532 (619)
+-|..|.+-|+.|.-+|+.+...|.++|=.. .-|. ...
T Consensus 130 ~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk-------~~~~-----------------------------------~~~ 167 (229)
T cd07594 130 GDMKTISKERKLLENKRLDLDACKTRVKKAK-------SAEA-----------------------------------IEQ 167 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------Cccc-----------------------------------hhh
Confidence 3577778889999999998888777653111 0000 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 533 LKDAISSALDVMQAMASSICLLSSKVENM-NSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 533 lk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+.+.|..|.+-.+.-.-.+...|-.+-+. ..-+.+|...+.-+....++|.++|..+.
T Consensus 168 ~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 226 (229)
T cd07594 168 AEQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQ 226 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555554 67789999999999999999999998764
No 23
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=60.04 E-value=2e+02 Score=29.62 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHH
Q 007071 454 AWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNL 533 (619)
Q Consensus 454 ~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~sl 533 (619)
-|..|.+-|+.|..+|+.+...|.++|=.. .+ | ..+
T Consensus 112 ~~k~i~k~RKkLe~rRLdyD~~ksk~~kak---~~----------------------------------------~-~~~ 147 (215)
T cd07593 112 EMKEYHSARKKLESRRLAYDAALTKSQKAK---KE----------------------------------------D-SRL 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc----------------------------------------c-hhH
Confidence 467788888888888888877775543221 00 0 124
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007071 534 KDAISSALDVMQAMASSICLLSSKVENM-NSLTAELMSVTAKEMALLEQCKDFSSTLSA 591 (619)
Q Consensus 534 k~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa~Va~qE~~lLeEC~eLL~~~a~ 591 (619)
.+.|..|.+-+++-.-.+...|-.+-+. ..-+.+|...+.-+.....+|.++|..+..
T Consensus 148 eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 148 EEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444443 567889999999999999999999987653
No 24
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=59.97 E-value=1.7e+02 Score=30.32 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007071 562 NSLTAELMSVTAKEMALLEQCKDFSSTLSA 591 (619)
Q Consensus 562 ~~lvSELa~Va~qE~~lLeEC~eLL~~~a~ 591 (619)
...+.+|...+.-+....++|.++|..+..
T Consensus 185 ~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~ 214 (223)
T cd07592 185 VEQVSQLSALVEAQLDYHRQSAEILEELQS 214 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999987653
No 25
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.81 E-value=1.2e+02 Score=31.15 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=63.5
Q ss_pred HHhhcccChhhHHhhhhhhhhhHHHH----------HHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Q 007071 484 ILKGQFPYLEEWALLDKDHTNSLLGA----------TEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICL 553 (619)
Q Consensus 484 IL~~Qm~~LEeW~~LE~ehsssLs~a----------~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~ 553 (619)
.++.|+.+||.|-+ .+..++.+. .+.+-.-.+--|+..|+..|.+=--.+|...-+.+.+|...+-.
T Consensus 5 hf~~Qi~~iE~Wl~---~~~~~~~k~~~~~~~~e~~~nsfl~~~~p~~~~s~~vidqdYT~~al~~f~~~l~e~~~~ll~ 81 (214)
T cd07609 5 HFDDQVDAIEKWLD---GYVSSTKKLYSSLDELERVINSFLSHLLPPLLVSGGVIDQDYTPLALKRFGDGLKDFWGGVLS 81 (214)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999942 333333333 33333333322488999999887778888888888888865555
Q ss_pred hhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 554 LSSKVEN-----MNSLTAELMSVTAKEMALLEQCKDFSST 588 (619)
Q Consensus 554 llpKvee-----~~~lvSELa~Va~qE~~lLeEC~eLL~~ 588 (619)
.+-+.+. +..++.+=.+...+-+.-+|.+.+=...
T Consensus 82 ~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~ 121 (214)
T cd07609 82 ALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDS 121 (214)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333 3444444456666666667766664443
No 26
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.73 E-value=2.8e+02 Score=29.76 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=56.1
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhcc--cccccCCCc--ccc-hHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Q 007071 493 EEWALLDKDHTNSLLGATEALKAST--LRLPVVGKA--IAD-VQNLKDAISSALDVMQAMASSICLLSSK-VENMNSLTA 566 (619)
Q Consensus 493 EeW~~LE~ehsssLs~a~eaL~Aat--lRLPv~~GA--kaD-~~slk~AL~sAvdvMq~i~ssi~~llpK-vee~~~lvS 566 (619)
-+=+.||.||+-+|..+.+-+..-. .+.+...|= ..- +.--...|.+-..+-+.=...-..|.-+ +..+.....
T Consensus 29 RrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~~Skdh~~LSd~y~~~~~~rl~~~~e 108 (263)
T cd07682 29 RKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHATLSDIYLNNIIPRFVQISE 108 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3348999999999999999987744 223322111 111 1111222222222222222222222222 233556777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhH
Q 007071 567 ELMSVTAKEMALLEQCK-DFSSTLSALQ 593 (619)
Q Consensus 567 ELa~Va~qE~~lLeEC~-eLL~~~a~Lq 593 (619)
++++++.+=+++.-+|. |||..+..||
T Consensus 109 d~~Ri~KksKEi~~q~~eeLlkV~~ELq 136 (263)
T cd07682 109 DSGRLFKKSKEVGLQLQEDLMKVLNELY 136 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777776775 5777888887
No 27
>PRK14011 prefoldin subunit alpha; Provisional
Probab=56.24 E-value=15 Score=35.42 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred hcccccccCCCcc-----cchHH--------------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 007071 515 ASTLRLPVVGKAI-----ADVQN--------------LKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSV 571 (619)
Q Consensus 515 AatlRLPv~~GAk-----aD~~s--------------lk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~V 571 (619)
....-+||++|+. .|.+. +.+|+.---.=.+.|......+...+++.+..+.+|..+
T Consensus 49 ~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 49 SEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred CCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999884 22222 333333333334444455555555555544444444443
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.98 E-value=1.1e+02 Score=38.13 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcc
Q 007071 448 EKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAI 527 (619)
Q Consensus 448 E~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAk 527 (619)
|.+|..+=..+++++.-+.+-++++++++.++|+.. ++..-+.+=...+.++...+-.-++-|++.---||-..|..
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e---~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~ 474 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLRE---GELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQE 474 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 456777778889999999999999999999999865 45554555556666777778888888888777777776654
No 29
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=55.12 E-value=92 Score=30.49 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHHHhcccccccCCCcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007071 502 HTNSLLGATEALKASTLRLPVVGKAI-ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLE 580 (619)
Q Consensus 502 hsssLs~a~eaL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLe 580 (619)
.+.++..+++.|..+-.- + .+.. ..++-.+++++..-|-+++=.-+.+.|+.|+||++.-+..+-..++|=| .|.
T Consensus 64 ia~svd~ll~~L~~~L~~--m-S~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK-~Ik 139 (149)
T PF10157_consen 64 IAESVDSLLRSLRSSLHS--M-SAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIK-DIK 139 (149)
T ss_pred HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 556666666666655444 2 2333 3345677888888888888888888999999999999999888877644 345
Q ss_pred HHHHHHH
Q 007071 581 QCKDFSS 587 (619)
Q Consensus 581 EC~eLL~ 587 (619)
++.|+|.
T Consensus 140 ~~lD~lE 146 (149)
T PF10157_consen 140 KLLDLLE 146 (149)
T ss_pred HHHHHHH
Confidence 5555554
No 30
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=54.35 E-value=82 Score=28.89 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=65.0
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccc-----cC----CCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLP-----VV----GKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM 561 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLP-----v~----~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~ 561 (619)
+|++-..-|.+|..-+..-+..|...-.--+ +. .....+...+.++|..+++.-..+...++.+...+++-
T Consensus 43 ~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~ 122 (148)
T cd01052 43 ELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGK 122 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566677888999999999988876543211 11 11122445677888888888888888888888766554
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHH
Q 007071 562 NSLTAE-LMSVTAKEMALLEQCKDFS 586 (619)
Q Consensus 562 ~~lvSE-La~Va~qE~~lLeEC~eLL 586 (619)
+....+ |-.+...|...+....+||
T Consensus 123 D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 123 DPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444444 4566778888888877765
No 31
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=53.90 E-value=2.8e+02 Score=28.93 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccch
Q 007071 451 IWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADV 530 (619)
Q Consensus 451 Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~ 530 (619)
|=+-|..|.+-|+.|.-+|+.+...|..+|=. |
T Consensus 128 l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ka----------------e------------------------------- 160 (220)
T cd07617 128 LEGDWKTISKERRLLQNRRLDLDACKARLKKA----------------E------------------------------- 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------H-------------------------------
Confidence 33467788888999999999988887765320 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 531 QNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 531 ~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+-|..|.+-.++=.-....+|-.+-+. ..-|.+|...+.-+.....+|.++|..+.
T Consensus 161 ----~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~ 217 (220)
T cd07617 161 ----HELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQATYYAQCYRHMLDLQ 217 (220)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333322222233344445555 46788999999999999999999998764
No 32
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=53.43 E-value=2.9e+02 Score=28.90 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=71.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhh
Q 007071 428 QWRFVNARADATFMVQQLNAEK--NIW-NAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTN 504 (619)
Q Consensus 428 QWRFaNARAeaa~~~q~~~AE~--~Ly-~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehss 504 (619)
|=+.++++.+-...++..--+. .+. .-|..|.+.|+.|..+|+.+.-.|..++=. . | ++.
T Consensus 90 ~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka--~---------k------~~~ 152 (244)
T cd07595 90 QNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA--H---------K------SSG 152 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc--c---------c------ccc
Confidence 4445555555444433332221 122 456677778888888888887777655311 0 0 000
Q ss_pred hHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007071 505 SLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAM----ASSICLLSSKVENMNSLTAELMSVTAKEMALLE 580 (619)
Q Consensus 505 sLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i----~ssi~~llpKvee~~~lvSELa~Va~qE~~lLe 580 (619)
. .+....++.|++.|..|.+-+++. ...+.+|+.+ =...+..|...+.......+
T Consensus 153 ----------------~--~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~---E~e~~~~l~~lv~aQl~YH~ 211 (244)
T cd07595 153 ----------------G--QGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAK---EAEIASYLIDLIEAQREYHR 211 (244)
T ss_pred ----------------c--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHH
Confidence 0 112233345555555555555443 3444555555 14467788888899999999
Q ss_pred HHHHHHHHHH
Q 007071 581 QCKDFSSTLS 590 (619)
Q Consensus 581 EC~eLL~~~a 590 (619)
.|.++|..+.
T Consensus 212 ~a~e~L~~l~ 221 (244)
T cd07595 212 TALSVLEAVL 221 (244)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 33
>PRK10869 recombination and repair protein; Provisional
Probab=52.95 E-value=4.2e+02 Score=30.70 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccC-------hhhHHhhhhhhh--hhHHHHHHHHHhcc
Q 007071 447 AEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPY-------LEEWALLDKDHT--NSLLGATEALKAST 517 (619)
Q Consensus 447 AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~-------LEeW~~LE~ehs--ssLs~a~eaL~Aat 517 (619)
.=+.+|..|..+.+..+.+..+.-+.++ -...|.-|+.- -.+|..||.++. .....+.+++..+.
T Consensus 158 ~~~~~y~~~~~~~~~l~~l~~~~~~~~~------~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~ 231 (553)
T PRK10869 158 EMRAAYQLWHQSCRDLAQHQQQSQERAA------RKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888876665554443322221 12233333332 356777777754 33344455555544
Q ss_pred ccc
Q 007071 518 LRL 520 (619)
Q Consensus 518 lRL 520 (619)
-.|
T Consensus 232 ~~L 234 (553)
T PRK10869 232 QLL 234 (553)
T ss_pred HHh
Confidence 444
No 34
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=49.72 E-value=1.6e+02 Score=27.56 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 532 NLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFS 586 (619)
Q Consensus 532 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL 586 (619)
++.++|..++.+=..-...-..+..++.+ ......|..++.+|+.-++...++|
T Consensus 101 ~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d-~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 101 SIKEMLKLDIASEKAAIAKYKRQAETIKD-PYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555555544333333333333333332 4456668889999999988877765
No 35
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.32 E-value=2.4e+02 Score=32.75 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=95.6
Q ss_pred Cccchhhhhhhhhhhcchh-hHHHHHHhHHHHHHHHHH--------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 007071 409 GEDRIVDAHMLRLLHNRYL-QWRFVNARADATFMVQQL--------NAEKNIW----NAWVTISELRNSVTLKRIKLLLV 475 (619)
Q Consensus 409 ~~~~~Ed~HqLRLLhNRlL-QWRFaNARAeaa~~~q~~--------~AE~~Ly----~~W~~is~LR~sVa~KRieLq~l 475 (619)
.+++-+=+--++-||||+= -++|-----+.+...-|. +.-.+|- .+|..|..|-+-|...=+.++..
T Consensus 133 ~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~~~~ 212 (622)
T COG5185 133 QPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKLDMC 212 (622)
T ss_pred CCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788888877 777765444444433321 1222332 47999999988887777644433
Q ss_pred HHH----------------hHHHhHHhhcccCh---hhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHH
Q 007071 476 KKK----------------LKLTSILKGQFPYL---EEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDA 536 (619)
Q Consensus 476 kq~----------------~KL~~IL~~Qm~~L---EeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~A 536 (619)
-+. +-.+++.++=|.|| ++...+|.+.---+......+..-+-+|- --.+.|.+-
T Consensus 213 ~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk------~~n~~l~e~ 286 (622)
T COG5185 213 LQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLK------TQNDNLYEK 286 (622)
T ss_pred HhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 222 23344455555565 34566666666556666665555544432 233455555
Q ss_pred HHHHHHHHHHHHHHHH-----------------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 007071 537 ISSALDVMQAMASSIC-----------------LLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSL 599 (619)
Q Consensus 537 L~sAvdvMq~i~ssi~-----------------~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SL 599 (619)
+.+|.++=+.|.-.=. -+=.|.++-.+++. .|-.||.+-=..+.+||-++.+|
T Consensus 287 i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~----------kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 287 IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE----------KLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH----------HHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666555444432211 11112222222222 23345555556677777778888
Q ss_pred hhhh
Q 007071 600 RTHI 603 (619)
Q Consensus 600 R~~l 603 (619)
+.|+
T Consensus 357 ~~q~ 360 (622)
T COG5185 357 HKQL 360 (622)
T ss_pred HHHH
Confidence 7765
No 36
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=48.96 E-value=3.5e+02 Score=29.42 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcc
Q 007071 449 KNIWNAWVTISELRNSVTLKRIKLLLVKKKLK-LTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAI 527 (619)
Q Consensus 449 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAk 527 (619)
.+|-||-....+|=..+..+|.||++.++.+. |.+|=-. |.+++...|.+.--
T Consensus 126 ~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~---~MdEyE~~EeeLqk----------------------- 179 (338)
T KOG3647|consen 126 AQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPA---HMDEYEDCEEELQK----------------------- 179 (338)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHH-----------------------
Confidence 46888888899999999999999999887653 5444322 55666666655321
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQI 594 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqV 594 (619)
-...++-+.+..++|=++|-..+.-|....+|.++-|..|..=-+
T Consensus 180 ----------------------ly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ekl~ 224 (338)
T KOG3647|consen 180 ----------------------LYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPEKLI 224 (338)
T ss_pred ----------------------HHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHHHhh
Confidence 122355567788899999999999999999999988877765443
No 37
>PLN03188 kinesin-12 family protein; Provisional
Probab=48.33 E-value=2.6e+02 Score=35.94 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hHHH----hHHhhcccChhhHHhhhhhhhhhH
Q 007071 455 WVTISELRNSVTLKRIKLLLVKKK-LKLT----SILKGQFPYLEEWALLDKDHTNSL 506 (619)
Q Consensus 455 W~~is~LR~sVa~KRieLq~lkq~-~KL~----~IL~~Qm~~LEeW~~LE~ehsssL 506 (619)
|..+..=|..+...|+||+..|.- ..|. --+.++-..||++++||.+|..=|
T Consensus 1071 r~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll 1127 (1320)
T PLN03188 1071 RTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLL 1127 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555455555667777665542 1233 333445568999999999998544
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=48.25 E-value=6.7e+02 Score=31.67 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=27.6
Q ss_pred hhhhhhhhcchhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 416 AHMLRLLHNRYLQWRFVNARADATFMVQQ---LNAEKNIWNAWVTISELRNSVTLKRIKLL 473 (619)
Q Consensus 416 ~HqLRLLhNRlLQWRFaNARAeaa~~~q~---~~AE~~Ly~~W~~is~LR~sVa~KRieLq 473 (619)
.+++.+++.+|.+++---...+..+...+ ...+..|-..-..|..++..+...+-++.
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 284 (1163)
T COG1196 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777655555554444332 12222333344444444444444333333
No 39
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=45.99 E-value=3.8e+02 Score=30.47 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=76.6
Q ss_pred HHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH-hhhhhh
Q 007071 480 KLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSIC-LLSSKV 558 (619)
Q Consensus 480 KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~-~llpKv 558 (619)
.|..|++.||-+=|....|+.++.-.+.-+.++|+---+| .+-|.+-|+.++++=|.=..++. .|-..-
T Consensus 268 eL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR----------~erLEEqLNdlteLqQnEi~nLKqElasme 337 (455)
T KOG3850|consen 268 ELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYR----------YERLEEQLNDLTELQQNEIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999888999999999999999999999987666 45678888888888776666665 555556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007071 559 ENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQI 594 (619)
Q Consensus 559 ee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqV 594 (619)
|.+.|.--|=++-+. +-||-|..-+..+...|.
T Consensus 338 ervaYQsyERaRdIq---EalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 338 ERVAYQSYERARDIQ---EALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 668887777666553 456777776666655554
No 40
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.81 E-value=7e+02 Score=31.20 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.0
Q ss_pred ChhhHHhhhhhhhhhHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGA 509 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a 509 (619)
+.|-...|+.+|..-|...
T Consensus 429 lkek~t~l~~~h~~lL~K~ 447 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKY 447 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677778888888655543
No 41
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.02 E-value=2.6e+02 Score=29.83 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=50.3
Q ss_pred hcccChhhH-------HhhhhhhhhhHHHHHHHHHhccccc--ccCC----Cccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 007071 487 GQFPYLEEW-------ALLDKDHTNSLLGATEALKASTLRL--PVVG----KAIA-DVQNLKDAISSALDVMQAMASSIC 552 (619)
Q Consensus 487 ~Qm~~LEeW-------~~LE~ehsssLs~a~eaL~AatlRL--Pv~~----GAka-D~~slk~AL~sAvdvMq~i~ssi~ 552 (619)
.|+.+|++| +.+|++|+-.|..+......-.-++ |+.- +.+. ..++....+..=-.+|...++.-.
T Consensus 5 ~e~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A~ 84 (260)
T cd07677 5 EQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVAQ 84 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 355556555 7899999999999987766554322 2221 2222 333333444444556666666655
Q ss_pred hhhhhhhhhhHHHHHHHHHHH
Q 007071 553 LLSSKVENMNSLTAELMSVTA 573 (619)
Q Consensus 553 ~llpKvee~~~lvSELa~Va~ 573 (619)
.=+--.+....++++-+.+++
T Consensus 85 ~~~~~ae~l~~~~a~~~k~~r 105 (260)
T cd07677 85 SRINICENYKNLISEPARTVR 105 (260)
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 555555566666666555544
No 42
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.59 E-value=2e+02 Score=30.74 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHh
Q 007071 443 QQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKA 515 (619)
Q Consensus 443 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~A 515 (619)
+....+++|-++-..-.+|-..+..|+.||++.++-++-..-+ -=.|+||...||.+-..-+..-++.+.+
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v--RPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV--RPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556788888888888899999999998887766533322 2359999999999966555555555544
No 43
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=42.32 E-value=4.2e+02 Score=27.63 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007071 532 NLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSA 591 (619)
Q Consensus 532 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~ 591 (619)
++..|...=++--+.....+.+|+.. =...+.+|...+.-+-...++|.++|..+..
T Consensus 158 E~~~A~~kfees~E~a~~~M~n~le~---e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~ 214 (223)
T cd07615 158 EIRQAVEKFEESKELAERSMFNFLEN---DVEQVSQLSVLIEAALDYHRQSTEILEDLQS 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333334444444455444 0346788899999999999999999987653
No 44
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=41.64 E-value=1e+02 Score=36.85 Aligned_cols=20 Identities=40% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHhHHHhHHhhcccChhhH
Q 007071 476 KKKLKLTSILKGQFPYLEEW 495 (619)
Q Consensus 476 kq~~KL~~IL~~Qm~~LEeW 495 (619)
.|-.+|..|+..|..||++-
T Consensus 4 ~ql~qlt~i~~~~~~~L~~~ 23 (683)
T PF08580_consen 4 NQLSQLTSILLPIALYLSES 23 (683)
T ss_pred HHHHHHHhcccchHHHHHHH
Confidence 34567888888998888774
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.42 E-value=7.2e+02 Score=30.05 Aligned_cols=23 Identities=9% Similarity=0.382 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 007071 529 DVQNLKDAISSALDVMQAMASSI 551 (619)
Q Consensus 529 D~~slk~AL~sAvdvMq~i~ssi 551 (619)
++..|...|....|.++.|+.-+
T Consensus 553 E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 553 ELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665544
No 46
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.46 E-value=3.1e+02 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=26.1
Q ss_pred HhHHHhHHhhcccChhhH-------HhhhhhhhhhHHHHHHHHHh
Q 007071 478 KLKLTSILKGQFPYLEEW-------ALLDKDHTNSLLGATEALKA 515 (619)
Q Consensus 478 ~~KL~~IL~~Qm~~LEeW-------~~LE~ehsssLs~a~eaL~A 515 (619)
-.+|..-....+.+||+. +.||.+|+..|..++.-...
T Consensus 7 ~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~ 51 (264)
T cd07654 7 LSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLK 51 (264)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555544 79999999999999888644
No 47
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.46 E-value=7.3e+02 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 442 VQQLNAEKNIWNAWVTISELRNSVTLKRIKLLL 474 (619)
Q Consensus 442 ~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~ 474 (619)
-+....|..+...|..+...++...+.=.+|+.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566667777777777777777666666655
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.39 E-value=5.3e+02 Score=28.26 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhc
Q 007071 530 VQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSLRTHIIQRN 607 (619)
Q Consensus 530 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~liQ~~ 607 (619)
+..+.+|=.+...+-++|.--...+.-.-++|..|++++++.=...+.+.-|-.+|...+....---..|...|..++
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888888999999999999999999999999999999888887755555665554443
No 49
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=39.36 E-value=3.9e+02 Score=32.13 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=65.0
Q ss_pred hHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcc-------cccccCCCc-ccchH-------------------
Q 007071 479 LKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKAST-------LRLPVVGKA-IADVQ------------------- 531 (619)
Q Consensus 479 ~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~Aat-------lRLPv~~GA-kaD~~------------------- 531 (619)
.|....++.|+..==+|..|-.+|...|..-|+.+-..+ +.-|+.+|. ..|++
T Consensus 108 K~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~l 187 (683)
T PF08580_consen 108 KKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSL 187 (683)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCC
Confidence 334555666666666677776777766666665544333 233443322 12222
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhhh
Q 007071 532 --------NLKDAISSALDVMQAMASSICLLSSK-VENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSLRTH 602 (619)
Q Consensus 532 --------slk~AL~sAvdvMq~i~ssi~~llpK-vee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~ 602 (619)
++.+-+..-..-||.|..++ .|||. ++++.......-..+.. .|.+.-+.|+..-..|+-+=..||.-
T Consensus 188 PtF~~~Desl~~~ll~L~arm~PLraSL-dfLP~Ri~~F~~ra~~~fp~a~e--~L~~r~~~L~~k~~~L~~e~~~LK~E 264 (683)
T PF08580_consen 188 PTFSPQDESLYSSLLALFARMQPLRASL-DFLPMRIEEFQSRAESIFPSACE--ELEDRYERLEKKWKKLEKEAESLKKE 264 (683)
T ss_pred CCCCcHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677799999999 66664 55555544333222222 23334444455555555544455443
Q ss_pred h
Q 007071 603 I 603 (619)
Q Consensus 603 l 603 (619)
|
T Consensus 265 L 265 (683)
T PF08580_consen 265 L 265 (683)
T ss_pred h
Confidence 3
No 50
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.78 E-value=4.4e+02 Score=27.78 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=54.6
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMS 570 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~ 570 (619)
..-.|+.+|.+-..+|.++..++...+-.+ ..+++.+.+.+.+.|..-+-..++|...+..=--+-.++..+.-.|+.
T Consensus 97 ~~~lws~~E~~L~~~L~~~a~~~d~~~~~~--~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 97 IYTLWSASEEELADSLKGMASCIDRCCKAT--DKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446799999999999999999888544332 345666777777777777777777777666555555555555555555
No 51
>PRK11637 AmiB activator; Provisional
Probab=38.12 E-value=5.9e+02 Score=28.15 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007071 443 QQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKL 479 (619)
Q Consensus 443 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~ 479 (619)
+....+..|=.+...|.+|...+...+-+|..++..+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666655555443
No 52
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.08 E-value=1.9e+02 Score=32.53 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=34.8
Q ss_pred CcccchHHHHHHHHHHHHHH--------HHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 007071 525 KAIADVQNLKDAISSALDVM--------QAMASSICLLSSKVENMN-SLTAELMSVTAKE----MALLEQCKDFSSTLSA 591 (619)
Q Consensus 525 GAkaD~~slk~AL~sAvdvM--------q~i~ssi~~llpKvee~~-~lvSELa~Va~qE----~~lLeEC~eLL~~~a~ 591 (619)
+....+..||..|.+..+-| ..|.-.|.++..++..|. ....+...+=.-| +++|-.|-++|-++..
T Consensus 273 lHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~ 352 (395)
T PF10267_consen 273 LHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLT 352 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 44455556666665555433 356666667777766666 1111221111111 4666667666555444
Q ss_pred h
Q 007071 592 L 592 (619)
Q Consensus 592 L 592 (619)
+
T Consensus 353 v 353 (395)
T PF10267_consen 353 V 353 (395)
T ss_pred H
Confidence 3
No 53
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.74 E-value=5.4e+02 Score=27.58 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHH
Q 007071 447 AEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGA 509 (619)
Q Consensus 447 AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a 509 (619)
++..+=.+=..+.++++.+..-+-+|+..|.+..+..+-......++.-..|+.+....-..+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667788888888888888899888888777654433345566666666655444333
No 54
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=37.33 E-value=2.9e+02 Score=24.31 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred cChhhHHhhhhhhhhhHHHHHHHHHhccccccc--CCCccc-chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHH
Q 007071 490 PYLEEWALLDKDHTNSLLGATEALKASTLRLPV--VGKAIA-DVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLT 565 (619)
Q Consensus 490 ~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv--~~GAka-D~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lv 565 (619)
.+|++.+.-|.+|..-+..-+..|-....-=|+ ..-... ...++.++|..+++.-..+...+..+.-.+++. +...
T Consensus 35 ~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t 114 (142)
T PF00210_consen 35 KFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPET 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 367888888888988888887777641111110 000000 024788899999999999999888888888764 4444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 007071 566 AEL-MSVTAKEMALLEQCKDFSSTLSAL 592 (619)
Q Consensus 566 SEL-a~Va~qE~~lLeEC~eLL~~~a~L 592 (619)
..+ .....+|...+.++.++|..+..|
T Consensus 115 ~~~~~~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 115 ADFLDEFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444 556667777888888888877654
No 55
>PHA03332 membrane glycoprotein; Provisional
Probab=36.87 E-value=4.9e+02 Score=33.18 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHH---H----HHHHHHHHHHHHhhh----hhhhhhhHHHHHHHH
Q 007071 503 TNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISS---A----LDVMQAMASSICLLS----SKVENMNSLTAELMS 570 (619)
Q Consensus 503 sssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~s---A----vdvMq~i~ssi~~ll----pKvee~~~lvSELa~ 570 (619)
..+|-++.+||..+.+.+=..--+.+|+.+|+++|.. | .|.+..|+..|.++. -++.++++=|+.|.+
T Consensus 866 ~vAL~~A~QAL~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led 944 (1328)
T PHA03332 866 SAALNAATQALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLED 944 (1328)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHH
Confidence 3577788888888888776665666777777776643 3 344445555555443 445556666666643
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.42 E-value=1e+03 Score=30.77 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 444 QLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKK 478 (619)
Q Consensus 444 ~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 478 (619)
...+|+.|=..-..+.++......-++++|..+.+
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 34455666666777777777777777777665544
No 57
>PRK10304 ferritin; Provisional
Probab=36.18 E-value=2.8e+02 Score=27.13 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=50.0
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKE 575 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE 575 (619)
+.=|++|+.-+-.-+..+.... .++-......+..++.+++..+++.=..+. ..+.+|..+|..|
T Consensus 47 s~EE~~HA~kl~~~i~~rgg~~-~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt--------------~~i~~l~~~A~~~ 111 (165)
T PRK10304 47 AQEEMTHMQRLFDYLTDTGNLP-RINTVESPFAEYSSLDELFQETYKHEQLIT--------------QKINELAHAAMTN 111 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCe-eeCCCCCCccccCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHc
Confidence 4446778877777777666543 243333345566678888887777654444 4455555555555
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhh
Q 007071 576 MALLEQCKDFSSTLSALQIKDCSL 599 (619)
Q Consensus 576 ~~lLeEC~eLL~~~a~LqVeE~SL 599 (619)
+.. ...++|.-.-.=||||..+
T Consensus 112 ~D~--~t~~fl~~fl~EQveEe~~ 133 (165)
T PRK10304 112 QDY--PTFNFLQWYVSEQHEEEKL 133 (165)
T ss_pred CCH--hHHHHHHHHHHHHHHHHHH
Confidence 554 3444454444445544444
No 58
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=36.06 E-value=7e+02 Score=28.93 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=33.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhHH--------Hh----HHhhcccChhhHHhhhhhhhhhH
Q 007071 455 WVTIS-ELRNSVTLKRIKLLLVKKKLKL--------TS----ILKGQFPYLEEWALLDKDHTNSL 506 (619)
Q Consensus 455 W~~is-~LR~sVa~KRieLq~lkq~~KL--------~~----IL~~Qm~~LEeW~~LE~ehsssL 506 (619)
|..+. +||--+..-|.-.+++++++++ +. -+.++-..||++++||.+|..=|
T Consensus 293 WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll 357 (488)
T PF06548_consen 293 WISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLL 357 (488)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66553 5676666666666666655432 22 33455568999999999998544
No 59
>PLN02939 transferase, transferring glycosyl groups
Probab=36.01 E-value=7e+02 Score=31.47 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=32.8
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 552 CLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 552 ~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
..+..|||....|+.-+++-+.+--..|++-++|=..+-.|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 296 DCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLE 337 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 347888888888888888777777778888888877777665
No 60
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=35.75 E-value=3.2e+02 Score=26.08 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKD 584 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~e 584 (619)
..++.....+....+.++.+...+..+...++++...+.++...+.+-...+++-.+
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~ 170 (213)
T PF00015_consen 114 ESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666666666555544444333
No 61
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=35.68 E-value=80 Score=29.10 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 461 LRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 461 LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
|...|..||.||+-+++-..|-.-|..||.-|++
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~ 35 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSE 35 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999887654
No 62
>PF05802 EspB: Enterobacterial EspB protein
Probab=34.50 E-value=6.5e+02 Score=27.56 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTA 573 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~ 573 (619)
=..+.|.+++..|.++||.|....-..-.++.++..-|.+-|+.+.
T Consensus 154 kyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as 199 (317)
T PF05802_consen 154 KYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKAS 199 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3456789999999999999999999999998887766664444443
No 63
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=34.19 E-value=5.7e+02 Score=26.78 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccch
Q 007071 451 IWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADV 530 (619)
Q Consensus 451 Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~ 530 (619)
|=+-|..|.+-|+.|..+|+.+...|..+|=..- ..+++.
T Consensus 128 le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~---------------------------------------~~~~~~- 167 (229)
T cd07616 128 IEGDYKTITKERKLLQNKRLDLDAAKTRLKKAKV---------------------------------------AEARAA- 167 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------------------------------------chhhcc-
Confidence 3356778888999999999988887776542110 001100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 531 QNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 531 ~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+.+.|..|.+=++.-......++-.+.+ -...+.+|...+.-+.....+|.++|..+.
T Consensus 168 --~e~elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 168 --AEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222222222222222223 234788999999999999999999998764
No 64
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=33.00 E-value=1.3e+03 Score=31.69 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhcccccccCCCccc-chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007071 504 NSLLGATEALKASTLRLPVVGKAIA-DVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQC 582 (619)
Q Consensus 504 ssLs~a~eaL~AatlRLPv~~GAka-D~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC 582 (619)
++....+.+|.+..+++=-.++-+- |.+-| ..+|..+...-.||.+.++.=++.|||.
T Consensus 571 n~~gerv~~~~a~a~~f~~~~~~~~cdp~vi---------------------~~R~~~le~~y~eL~~laa~RRarLE~s 629 (2473)
T KOG0517|consen 571 NAQGERVKALNAQALRFDSPKEYKPCDPQVI---------------------QERVAHLEQCYQELVELAAARRARLEES 629 (2473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777766644444542 54332 3345555666667777777777777777
Q ss_pred HHHHHHHHhhHHHhhhhh
Q 007071 583 KDFSSTLSALQIKDCSLR 600 (619)
Q Consensus 583 ~eLL~~~a~LqVeE~SLR 600 (619)
+.|-.-+-.+.=+|.-|+
T Consensus 630 r~l~~F~~d~~EeEaWlk 647 (2473)
T KOG0517|consen 630 RRLWQFLWDVEEEEAWLK 647 (2473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666666665554
No 65
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=32.58 E-value=5.7e+02 Score=26.29 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=60.6
Q ss_pred HHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 007071 472 LLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSI 551 (619)
Q Consensus 472 Lq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi 551 (619)
|+++++-++. ++.=..||.+=+.||.+|+-.|..++........+ | + .....+..++..-+..++.|...-
T Consensus 11 l~rlK~~~~~---~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~-~---~--~~~gs~~~a~~~il~~~e~lA~~h 81 (234)
T cd07652 11 LDRLKQSIAS---AKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKR-P---D--HKQGSFSNAYHSSLEFHEKLADNG 81 (234)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C---C--CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455554443 23335688888999999999999998887655432 1 1 112245556666666666666655
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 007071 552 CLLSSKVENMNSLTAELMSVTAKEMAL 578 (619)
Q Consensus 552 ~~llpKvee~~~lvSELa~Va~qE~~l 578 (619)
..|.-.+.+|..-+..|+....+++..
T Consensus 82 ~~~a~~L~~~~~eL~~l~~~~e~~RK~ 108 (234)
T cd07652 82 LRFAKALNEMSDELSSLAKTVEKSRKS 108 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666776666666653
No 66
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=32.25 E-value=4.5e+02 Score=25.03 Aligned_cols=45 Identities=18% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhh
Q 007071 456 VTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDK 500 (619)
Q Consensus 456 ~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ 500 (619)
..+.++.+.+....-..+.+..-+++..=+..|..+|--=+.+|.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEA 67 (213)
T PF00015_consen 23 ESIEEIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEA 67 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhcccc
Confidence 333333333333333344444444444444455555543344443
No 67
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=32.01 E-value=2.4e+02 Score=23.72 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=36.6
Q ss_pred ccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 007071 489 FPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASS 550 (619)
Q Consensus 489 m~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ss 550 (619)
+.|+.+=+.+|.+|+..|..+...+... .....+...++.+....++-++.|+..
T Consensus 29 ~~f~~~Ra~iE~eYak~L~kL~~~~~~~-------~~~~~~~~s~~~aw~~~~~e~~~~a~~ 83 (87)
T smart00055 29 KKFIRERAKIEEEYAKKLQKLSKKLRAV-------RDTESEYGSLSKSWEVLLSETDALAKQ 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999998774321 111234446777777666666666543
No 68
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=31.77 E-value=1.1e+03 Score=29.24 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHH
Q 007071 429 WRFVNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLG 508 (619)
Q Consensus 429 WRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~ 508 (619)
+|+.+++.++.+ ..+-..||.+-+.|.+=.-+-+++|++--+.+...-|.. + .-=||...|-.+.-.++..
T Consensus 437 ~rL~~~~~~~~~----~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~---g--As~eEI~rLm~eLR~A~~~ 507 (820)
T PF13779_consen 437 RRLERARTDEAL----REVADLLWDLALRIEDGDLSDAERRLRAAQEALREALER---G--ASDEEIARLMQELREAMQD 507 (820)
T ss_pred HHHHhcCCHHHH----HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHc---C--CCHHHHHHHHHHHHHHHHH
Confidence 334455555543 556678999999998866666666654433333322322 1 1127777777777777777
Q ss_pred HHHHHHhcccccccCC------Cc--c---cchHHHHHHH---------HHHHHHHHHHHHHHHhhhh------hhhhhh
Q 007071 509 ATEALKASTLRLPVVG------KA--I---ADVQNLKDAI---------SSALDVMQAMASSICLLSS------KVENMN 562 (619)
Q Consensus 509 a~eaL~AatlRLPv~~------GA--k---aD~~slk~AL---------~sAvdvMq~i~ssi~~llp------Kvee~~ 562 (619)
.+++|---.-+-|-.. +. . -|++.+-+-| ..|-++|+.|...+.++.. -.+++.
T Consensus 508 ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q~~~~~~~~ 587 (820)
T PF13779_consen 508 YMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQQQQQQEMQ 587 (820)
T ss_pred HHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCchhhHHHH
Confidence 7777766555555442 11 2 3333333333 3466777777777777753 346688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 563 SLTAELMSVTAKEMALLEQCKDFSSTL 589 (619)
Q Consensus 563 ~lvSELa~Va~qE~~lLeEC~eLL~~~ 589 (619)
..+.+|.+++.+++.|++|....+..-
T Consensus 588 q~m~~L~dl~r~Qq~L~D~tfr~~q~q 614 (820)
T PF13779_consen 588 QAMEELGDLLRRQQQLMDETFRQLQEQ 614 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999987666543
No 69
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=31.64 E-value=5.2e+02 Score=25.55 Aligned_cols=113 Identities=13% Similarity=0.249 Sum_probs=59.9
Q ss_pred hhHHhhhhh---hhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 007071 493 EEWALLDKD---HTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELM 569 (619)
Q Consensus 493 EeW~~LE~e---hsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa 569 (619)
+.|..+..+ +..+|+.++|-|.|.. .+...|.--.++.+|.+.|.. +.|.+++..+..+-.+++++....-.|.
T Consensus 15 ~~W~~~~~~~~~~l~sl~nL~eqL~al~-~~~~~~~pL~~fpdl~~rL~~--Kq~~ale~vl~~L~e~l~~l~~v~~~l~ 91 (168)
T PF15011_consen 15 EKWDSALSRCLPLLSSLANLAEQLQALQ-NVKNYGTPLRSFPDLQERLRR--KQLEALETVLAKLRETLEELQKVRDSLS 91 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCcccccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678777766 5566777777666542 223322113334444444432 2333333333333333333333333332
Q ss_pred HHHHHHHH------------------------HHHHHHHHHHHHHhhHHHhhhhhhhhhhhcc
Q 007071 570 SVTAKEMA------------------------LLEQCKDFSSTLSALQIKDCSLRTHIIQRNC 608 (619)
Q Consensus 570 ~Va~qE~~------------------------lLeEC~eLL~~~a~LqVeE~SLR~~liQ~~~ 608 (619)
+....=.. .|.+|.|=|..+..|.=.|+-+|..+++.=.
T Consensus 92 ~~~~~~~~l~~~~~~~~~l~~~~~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL~~l~ 154 (168)
T PF15011_consen 92 RQVRDVFQLYEQHAGLDELSLKALQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLLSSLS 154 (168)
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22221111 2556888888888888899999998887644
No 70
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=31.45 E-value=6.2e+02 Score=26.41 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=29.3
Q ss_pred HHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 547 MASSICLLSSK-VENMNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 547 i~ssi~~llpK-vee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
....+.+|+.. + .-+.+|...+.-+-....+|.++|..+.
T Consensus 173 a~~~M~n~l~~e~----e~~~~L~~fveAQl~Yh~qa~eiL~~l~ 213 (223)
T cd07613 173 AESSMFNLLEMDI----EQVSQLSALVQAQLEYHKQATQILQQVT 213 (223)
T ss_pred HHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455544 4 3456899999999999999999998765
No 71
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.31 E-value=2.9e+02 Score=26.26 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHhhhhhhhhhhh
Q 007071 534 KDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQ-------IKDCSLRTHIIQR 606 (619)
Q Consensus 534 k~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~Lq-------VeE~SLR~~liQ~ 606 (619)
.+.+...-..|++|...+..| .+- -......|.++-.....+.+.|-.|+..+..+. .+|.-|+.+|-++
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L-~~~--~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l 119 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEEL-QKH--DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEAL 119 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455666667777777777777 333 366677888889999999999999998887665 5788888888777
Q ss_pred cccccc
Q 007071 607 NCVTTT 612 (619)
Q Consensus 607 ~~~~~~ 612 (619)
......
T Consensus 120 ~~~l~~ 125 (141)
T PF13874_consen 120 EAQLNA 125 (141)
T ss_dssp ------
T ss_pred HHHHcC
Confidence 665443
No 72
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=31.13 E-value=7.8e+02 Score=28.16 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 529 DVQNLKDAISSALDVMQAMASSICLL---SSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 529 D~~slk~AL~sAvdvMq~i~ssi~~l---lpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
|+...|..|..|++++..=.+++..- --|..+++.+-.+.-.-.-.|.++|+.|++||..+-
T Consensus 102 ~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~ 166 (421)
T KOG2685|consen 102 DLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTL 166 (421)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 34456666677776665544433333 346666777777777777889999999999887653
No 73
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=31.11 E-value=2.5e+02 Score=27.66 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=43.6
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHH
Q 007071 492 LEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKV-ENMNSLTAELMS 570 (619)
Q Consensus 492 LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKv-ee~~~lvSELa~ 570 (619)
+++-..+|++=-.-...+...|.. +.-+|+ -+-|+..|...+...+|.|+.+..-+..+-..+ +++...+.+++.
T Consensus 46 ~~~i~~lE~~aD~i~~~i~~~L~~-~fitP~---dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~~ 121 (214)
T PF01865_consen 46 LEEIKELEHEADEIKREIREELYK-SFITPF---DREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELAE 121 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SS-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHH
Confidence 334444444433333333333333 333444 255666666666666666666665544333211 445555666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007071 571 VTAKEMALLEQCKDFSS 587 (619)
Q Consensus 571 Va~qE~~lLeEC~eLL~ 587 (619)
++.+.-..|.+|-+.|.
T Consensus 122 ~~~~~~~~l~~~i~~l~ 138 (214)
T PF01865_consen 122 IVVEAIEELVEAIEELK 138 (214)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 74
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=30.77 E-value=5.4e+02 Score=28.62 Aligned_cols=111 Identities=14% Similarity=-0.010 Sum_probs=66.9
Q ss_pred HHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHH-----HHHHHHHHHH-----HHHHHHHHhhhhhhhhhhHH
Q 007071 495 WALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLK-----DAISSALDVM-----QAMASSICLLSSKVENMNSL 564 (619)
Q Consensus 495 W~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk-----~AL~sAvdvM-----q~i~ssi~~llpKvee~~~l 564 (619)
...+-..--.+|..|+--|+...+ ++-..+.-...+.|. +-|..-+|+. ..+...++.|+----+...+
T Consensus 213 l~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~l 291 (346)
T KOG0989|consen 213 LKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQL 291 (346)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHH
Confidence 333444445778888888888777 222111112222232 1111222221 35566677777777778899
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhh
Q 007071 565 TAELMSVTAKE----MALLEQCKDFSSTLSALQIKDCSLRTHIIQR 606 (619)
Q Consensus 565 vSELa~Va~qE----~~lLeEC~eLL~~~a~LqVeE~SLR~~liQ~ 606 (619)
++||+.++... ..--++|...|.....-...=+.|+-+|+-+
T Consensus 292 msQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L 337 (346)
T KOG0989|consen 292 MSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDL 337 (346)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHH
Confidence 99999999988 6777788888887766555555666655544
No 75
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=30.63 E-value=8.7e+02 Score=28.71 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhH
Q 007071 529 DVQNLKDAISSALDVMQAMASSICL-LSSKVENMNSLTAELMSVTAKE--------MALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 529 D~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~lvSELa~Va~qE--------~~lLeEC~eLL~~~a~Lq 593 (619)
..+.|...++..-+-|+.+...+.. +-..|++++.++.+||++-.|= -.||||=.+||..++.+-
T Consensus 135 ~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~v 208 (624)
T PRK12714 135 SGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGYT 208 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhc
Confidence 3446666667777777777665553 3345777888887777654432 369999999999998773
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.45 E-value=5.1e+02 Score=25.08 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 007071 537 ISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSL 599 (619)
Q Consensus 537 L~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SL 599 (619)
+...-+-++.+...+..+.....++...+.++-..+..++.-++++.+.+..+..+.-+...|
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444333333
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.25 E-value=1.2e+03 Score=29.45 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 448 EKNIWNAWVTISELRNSVTLKRIKLLLVKKK 478 (619)
Q Consensus 448 E~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 478 (619)
+..+..+-..+.+++..+...+.+++.++.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELKRE 724 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 78
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=30.20 E-value=4.3e+02 Score=27.22 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 512 ALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVE-NMNSLTAELMSVTAKEMALLEQCKDFSST 588 (619)
Q Consensus 512 aL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKve-e~~~lvSELa~Va~qE~~lLeEC~eLL~~ 588 (619)
-.-.....+|+. +.|+-+|-+.+...+|.|+.+...+..+-+.+- ++...+-++++...+=-.++.+|-++|..
T Consensus 67 ~~l~~~~flP~~---R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~ 141 (217)
T COG1392 67 LELYKGFFLPFD---REDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLED 141 (217)
T ss_pred HHHHhcccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677775 567888888888888888888877766665555 66666666666655555555555554443
No 79
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=30.16 E-value=6.6e+02 Score=26.29 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----hHHhhcccChhhHHhhhhhhh--------hh---HHHHHHHH--------
Q 007071 458 ISELRNSVTLKRIKLLLVKKKLKLT-----SILKGQFPYLEEWALLDKDHT--------NS---LLGATEAL-------- 513 (619)
Q Consensus 458 is~LR~sVa~KRieLq~lkq~~KL~-----~IL~~Qm~~LEeW~~LE~ehs--------ss---Ls~a~eaL-------- 513 (619)
+.-|-++...-|.-||++|..+|-. .....|+-|-|....|=..|. .+ ++..+.-|
T Consensus 4 v~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~ 83 (213)
T cd07640 4 AAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLV 83 (213)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777788888888887732 233344444443333322221 11 11112222
Q ss_pred --HhcccccccCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhh------hhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q 007071 514 --KASTLRLPVVGKAIADVQNLK-DAISSALDVMQAMASSICLLS------SKVEN-MNSLTAELMSVTAKEMALLEQCK 583 (619)
Q Consensus 514 --~AatlRLPv~~GAkaD~~slk-~AL~sAvdvMq~i~ssi~~ll------pKvee-~~~lvSELa~Va~qE~~lLeEC~ 583 (619)
.+...-.|+.+=.|.|+..+| +.-..=..+-+.++..+...- ||-.+ +-..+.|.++.-..|+.+++
T Consensus 84 qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fq--- 160 (213)
T cd07640 84 QNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQ--- 160 (213)
T ss_pred HhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHH---
Confidence 234667899999999999888 444444444444444443321 11111 01133555555555554433
Q ss_pred HHHHHHHhhHHHhhhhhhhhhhhccccc
Q 007071 584 DFSSTLSALQIKDCSLRTHIIQRNCVTT 611 (619)
Q Consensus 584 eLL~~~a~LqVeE~SLR~~liQ~~~~~~ 611 (619)
+|+=|+=|+...||.++..+
T Consensus 161 --------l~acdYllkin~iq~KK~~d 180 (213)
T cd07640 161 --------LHMCEYLLKAQESQMKQGPD 180 (213)
T ss_pred --------HHHHHHHHHHhHHHHhhchH
Confidence 55566666777777776543
No 80
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=29.28 E-value=4.9e+02 Score=24.54 Aligned_cols=96 Identities=7% Similarity=0.102 Sum_probs=64.3
Q ss_pred hhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHH-HHHHHHHHHH
Q 007071 500 KDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAE-LMSVTAKEMA 577 (619)
Q Consensus 500 ~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSE-La~Va~qE~~ 577 (619)
.+|..-|..-+-.|-....-=++.. ...+ .++.+.|..+++.-..+...++.+..-+++. +..... |-.++..|..
T Consensus 52 ~~Ha~~laeri~~lGg~p~~~~i~~-~~~~-~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~ 129 (157)
T TIGR00754 52 MKHADEIIERILFLEGLPNLQDLGK-LRIG-ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEE 129 (157)
T ss_pred HHHHHHHHHHHHHCCCCCCCCcCCC-CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3677777777777665444212211 2222 3566778888888888888888887755442 333333 4569999999
Q ss_pred HHHHHHHHHHHHHhhHHHhh
Q 007071 578 LLEQCKDFSSTLSALQIKDC 597 (619)
Q Consensus 578 lLeEC~eLL~~~a~LqVeE~ 597 (619)
.+..++.+|..+..+.++.+
T Consensus 130 h~~~l~~~l~~~~~~g~~~y 149 (157)
T TIGR00754 130 HIDWLETQLELIDKLGLENY 149 (157)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 99999999999998887665
No 81
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=28.89 E-value=7.1e+02 Score=26.29 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=60.8
Q ss_pred HHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH--------HHHHHHHHHHHHHH
Q 007071 510 TEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAE--------LMSVTAKEMALLEQ 581 (619)
Q Consensus 510 ~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSE--------La~Va~qE~~lLeE 581 (619)
...|+...-..+.-+-.-.|+..+.-=+.-..++-++|--+.-.|.-||++-...+.+ +++.......+.++
T Consensus 54 a~~l~~~l~~~~~G~~~~ydl~sI~~Ri~Ll~~~~~aI~~~tt~L~~KVq~AH~~~g~~it~aii~~~npfat~~ql~~~ 133 (228)
T PF07373_consen 54 AFELKQSLEKIAEGGITIYDLDSIPARIELLIDVGDAIHFATTELQYKVQAAHVEIGFEITKAIIRAINPFATVDQLKDE 133 (228)
T ss_pred HHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3334444344444333456888888888888899999999999999999875554443 35556778899999
Q ss_pred HHHHHHHHHhhH
Q 007071 582 CKDFSSTLSALQ 593 (619)
Q Consensus 582 C~eLL~~~a~Lq 593 (619)
|.+|......++
T Consensus 134 i~~l~~~~~kv~ 145 (228)
T PF07373_consen 134 IEALKALLEKVL 145 (228)
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 82
>PRK00846 hypothetical protein; Provisional
Probab=28.84 E-value=2.7e+02 Score=24.65 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007071 438 ATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKL 481 (619)
Q Consensus 438 aa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 481 (619)
..+..+...-|-.|...-..|.+|.+-|+....++.+++..+++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888999999999999999999999888887663
No 83
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.18 E-value=7.5e+02 Score=26.33 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhccccc
Q 007071 441 MVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRL 520 (619)
Q Consensus 441 ~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRL 520 (619)
...+..||++|.-+=..+..-- .-.+|.|..++.-.|+ ...-...+.|..+-..|..+..-=++-|.-....
T Consensus 41 ~~~~a~~E~klsilerAL~~np---~~~~L~l~~l~~~~~~----~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~- 112 (321)
T PF08424_consen 41 AERRALAERKLSILERALKHNP---DSERLLLGYLEEGEKV----WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSN- 112 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-
Confidence 4455667776554444444411 2223333333333333 3445567889999999998877767766665544
Q ss_pred ccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 521 PVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 521 Pv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
.+...+..+.++...|++.|..+.... .....+...+-..+..|.-+=-..|.+|+-.=.+++.+|
T Consensus 113 ----~~~f~v~~~~~~y~~~l~~L~~~~~~~---~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 113 ----FASFTVSDVRDVYEKCLRALSRRRSGR---MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred ----hccCcHHHHHHHHHHHHHHHHHhhccc---cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 566778899999999998888887765 222222222333333333333344455554444555555
No 84
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.14 E-value=1.1e+03 Score=29.20 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007071 448 EKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLT 482 (619)
Q Consensus 448 E~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 482 (619)
|..--+.-.++-+|+....++=.|||+++|.+|++
T Consensus 155 ee~~~~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 155 EEHSGNIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566778888888888888888888877754
No 85
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.81 E-value=2.6e+02 Score=34.24 Aligned_cols=143 Identities=18% Similarity=0.202 Sum_probs=77.8
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 007071 426 YLQWRFVNARADATFMVQQLNAE---------KNIWNAWVTISELRNSVTLKRIKLLLVKK------------------- 477 (619)
Q Consensus 426 lLQWRFaNARAeaa~~~q~~~AE---------~~Ly~~W~~is~LR~sVa~KRieLq~lkq------------------- 477 (619)
-|||-+.|++-...-...+.+-+ .+||..|..|-+||+.-..+-+.-+..-.
T Consensus 510 tLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~ 589 (877)
T KOG1969|consen 510 TLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFS 589 (877)
T ss_pred HHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhc
Confidence 38999999988633322322222 46999999999999876544443222111
Q ss_pred ---HhHH-----------------HhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHH
Q 007071 478 ---KLKL-----------------TSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAI 537 (619)
Q Consensus 478 ---~~KL-----------------~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL 537 (619)
.+++ +..|..||..++.|+.| .|.-.+--...-|.|...++++.---+- +....-|
T Consensus 590 ~~~~~~~~D~~i~~~~~~s~WL~F~D~l~~~~~s~qn~eLl--rY~~~~~l~fh~l~at~~~~~i~~p~~~--q~~~~kl 665 (877)
T KOG1969|consen 590 IFLRLKYSDLGIGKPANASDWLFFHDLLYQSMYSHQNWELL--RYSPSVPLHFHQLFATIANKRIIRPKNS--QYEQRKL 665 (877)
T ss_pred cccccccccccccchhhhhhHHHhhhHHHHHHHhcCCeeec--ccccchhHHHHHHhcccCCcccCCCchh--HHHHHHH
Confidence 1111 22334444445555444 2444455556667777777777655443 3344444
Q ss_pred HHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHH
Q 007071 538 SSALDVMQAMASSIC----LLSSKVENMNSLTAELMSVT 572 (619)
Q Consensus 538 ~sAvdvMq~i~ssi~----~llpKvee~~~lvSELa~Va 572 (619)
..+-+.++++.+.|. .++++-+-...++++|-.+.
T Consensus 666 ~~~~e~i~s~is~i~s~~~~~~~~ksllldli~~iL~il 704 (877)
T KOG1969|consen 666 KRANEDIVSLISRIISYQGPLAASKSLLLDLIFEILPIL 704 (877)
T ss_pred HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHhc
Confidence 455555555444433 33444444556666665443
No 86
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.80 E-value=3.1e+02 Score=23.69 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007071 541 LDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSAL 592 (619)
Q Consensus 541 vdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~L 592 (619)
..+|.-+...|..+--++.++..--.+|...+.+|..-|++|.+.......+
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~ 57 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPF 57 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3478888888888888889888888899999999999999999976655443
No 87
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.60 E-value=1.3e+03 Score=28.96 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=50.3
Q ss_pred HHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 509 ATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSST 588 (619)
Q Consensus 509 a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~ 588 (619)
-++-|++-+.||-+ .+-|.+++|+.|..|.|-++-|+...-.+=-..+.+-.| -|-+++ .-+.-+++|-++...
T Consensus 394 QidelKn~if~~e~---~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~L-ke~aeg--srrraIeQcnemv~r 467 (1265)
T KOG0976|consen 394 QIDELKNHIFRLEQ---GKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVL-KEHAEG--SRRRAIEQCNEMVDR 467 (1265)
T ss_pred HHHHHHHhhhhhhh---ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH-HHhhhh--hHhhHHHHHHHHHHH
Confidence 35566666666654 367999999999999998888887544332222322222 222222 223457888888888
Q ss_pred HHhhH
Q 007071 589 LSALQ 593 (619)
Q Consensus 589 ~a~Lq 593 (619)
|.+++
T Consensus 468 ir~l~ 472 (1265)
T KOG0976|consen 468 IRALM 472 (1265)
T ss_pred HHHHh
Confidence 88876
No 88
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.65 E-value=5.5e+02 Score=24.35 Aligned_cols=86 Identities=24% Similarity=0.271 Sum_probs=57.7
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhcccccccCCCc---ccchHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhhhHH
Q 007071 493 EEWALLDKDHTNSLLGATEALKASTLRLPVVGKA---IADVQNLKDAISSALDVM-----QAMASSICLLSSKVENMNSL 564 (619)
Q Consensus 493 EeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GA---kaD~~slk~AL~sAvdvM-----q~i~ssi~~llpKvee~~~l 564 (619)
++|..+-.+..+.|.-++.-|..+++ |- +.+++.+++.+..+++-+ +...++|.+|.- +...
T Consensus 11 ~~W~~~~~~~~~pv~~al~~ld~ss~------g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~----i~~~ 80 (142)
T PF04048_consen 11 DEWPFMLTDDFNPVELALSLLDDSSV------GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQ----ILSS 80 (142)
T ss_pred HHHHHHhcCCCcHHHHHHHhcCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 68999999999999999999887653 43 345555666665555543 445555555543 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 565 TAELMSVTAKEMALLEQCKDFSST 588 (619)
Q Consensus 565 vSELa~Va~qE~~lLeEC~eLL~~ 588 (619)
+.+--.-+.+=+..|++|+.+|..
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555558889999998854
No 89
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.60 E-value=3e+02 Score=23.69 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007071 440 FMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLT 482 (619)
Q Consensus 440 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 482 (619)
+..+...-|-+|...-+.|.+|.+-|++...++++++..+++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788899999999999999999999999988777643
No 90
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.32 E-value=6.8e+02 Score=26.72 Aligned_cols=76 Identities=9% Similarity=-0.037 Sum_probs=38.9
Q ss_pred HHHhHHhhcccChhhH-------HhhhhhhhhhHHHHHHHHHhcccc-cccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 007071 480 KLTSILKGQFPYLEEW-------ALLDKDHTNSLLGATEALKASTLR-LPVVGKAIADVQNLKDAISSALDVMQAMASSI 551 (619)
Q Consensus 480 KL~~IL~~Qm~~LEeW-------~~LE~ehsssLs~a~eaL~AatlR-LPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi 551 (619)
+|..-....+.+||+. +.||.+|+..|..++.-...-.-. -+=...-.-.+.++.+.+..-.+....-+-+.
T Consensus 9 ~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q~~~~~ 88 (263)
T cd07678 9 ILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQGRVTR 88 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455443 889999999999998877543311 00000001133344555555555544444444
Q ss_pred Hhhh
Q 007071 552 CLLS 555 (619)
Q Consensus 552 ~~ll 555 (619)
+.++
T Consensus 89 ~~~~ 92 (263)
T cd07678 89 LEAY 92 (263)
T ss_pred HHHH
Confidence 4443
No 91
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=26.19 E-value=9.4e+02 Score=26.78 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=77.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhc------ccChh-hHHhhhhh--h
Q 007071 432 VNARADATFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQ------FPYLE-EWALLDKD--H 502 (619)
Q Consensus 432 aNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Q------m~~LE-eW~~LE~e--h 502 (619)
+.++-+.-...+....++...+.-.++.+||..+..-.++++..+.+..|..+=+.| +..|. +-.....+ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~ 257 (458)
T COG3206 178 AQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQ 257 (458)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666777778888999999999999999999999998888762222 22221 11111111 1
Q ss_pred hhhHHHHHHHHHhccc---ccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 007071 503 TNSLLGATEALKASTL---RLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSV 571 (619)
Q Consensus 503 sssLs~a~eaL~Aatl---RLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~V 571 (619)
..+.-.....+..... .++-+.... .++.|+.-..+.......+.....-..|.+......+.++-.-
T Consensus 258 ~~a~l~~~~~~~~~~~~~~~~~~~~~s~-~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~ 328 (458)
T COG3206 258 AEARLASLLQLLPLGREAAALREVLESP-TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQ 328 (458)
T ss_pred HHHHHHHHHHhhcccccchhhhHHhccH-HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHH
Confidence 1111111222222221 222211111 3667777776666666666666666666665555555444333
No 92
>PF13339 AATF-Che1: Apoptosis antagonizing transcription factor
Probab=25.65 E-value=1.4e+02 Score=27.71 Aligned_cols=88 Identities=25% Similarity=0.298 Sum_probs=0.0
Q ss_pred hccccCCCccchhhhhhhhhhhcchhhHHHHHHhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 402 DLKRGKMGEDRIVDAHMLRLLHNRYLQWRFVNARA-------------------DATFMVQQLNAEKNIWNAWVTISELR 462 (619)
Q Consensus 402 D~rkgKk~~~~~Ed~HqLRLLhNRlLQWRFaNARA-------------------eaa~~~q~~~AE~~Ly~~W~~is~LR 462 (619)
|+.||+-+-.|. .|+-++|..|.-=.+| +..+......+++.++.+|..+.+||
T Consensus 1 D~~KG~aV~~Q~-------~lwd~lL~~RIkLQK~l~~aN~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~Lq 73 (131)
T PF13339_consen 1 DAEKGKAVKNQL-------KLWDRLLELRIKLQKALTAANQLPQPETLKEFCESDEEFQEALEEAEKALKKLLDSLLELQ 73 (131)
T ss_pred CcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH---------------HHH------HHHHHHHHHhHHHhHHhhccc-ChhhHH
Q 007071 463 NSVT---------------LKR------IKLLLVKKKLKLTSILKGQFP-YLEEWA 496 (619)
Q Consensus 463 ~sVa---------------~KR------ieLq~lkq~~KL~~IL~~Qm~-~LEeW~ 496 (619)
.... .|| ---+..+...+++..+..+.. -|+-|.
T Consensus 74 ~~L~~~~~~~~~~~~~~~k~Kr~~~~~~~~~~~~~~~~~~~~~~~~~R~~~L~KW~ 129 (131)
T PF13339_consen 74 EELLEDNDSESEESDSKKKRKREKSSDRSLEEYWEEIQKLDKRLEPYRNSTLDKWS 129 (131)
T ss_pred HHhccccccccccccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 93
>PF13514 AAA_27: AAA domain
Probab=25.60 E-value=1.4e+03 Score=28.69 Aligned_cols=145 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHH
Q 007071 456 VTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKD 535 (619)
Q Consensus 456 ~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~ 535 (619)
..+.++..-+...+-++..++.+..-...+..-.+++.+|..|+.+ |.+.--...+..+....++.+..
T Consensus 181 ~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~-----------l~~l~~~~~~p~~~~~~~~~~~~ 249 (1111)
T PF13514_consen 181 QALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAE-----------LAELGEVPDFPEDGAERLEQLEE 249 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHhcCCcCCCChhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhccccc
Q 007071 536 AISSALDVMQAMASSICLLSSKVEN--MNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSLRTHIIQRNCVTT 611 (619)
Q Consensus 536 AL~sAvdvMq~i~ssi~~llpKvee--~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~liQ~~~~~~ 611 (619)
.+..+..-++.+..-+..+-.+.++ .+..+-+.+..+..=...+.+|+.....+..++.+-..++..+-++-+...
T Consensus 250 ~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 250 ELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 94
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.46 E-value=5.5e+02 Score=30.49 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSS-KVENMNSLTAELMSVTAKE-------MALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llp-Kvee~~~lvSELa~Va~qE-------~~lLeEC~eLL~~~a~Lq 593 (619)
...+.|...++..-+-|+.+...+..-+- .|++++.++.++|++-.|= ..||||=.+||..++.+-
T Consensus 137 ~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~v 210 (626)
T PRK08871 137 EKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQYT 210 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhc
Confidence 44556777777777777777776665544 5888888888888765443 379999999999998874
No 95
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.32 E-value=3.3e+02 Score=33.11 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhccc
Q 007071 450 NIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFP 490 (619)
Q Consensus 450 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~ 490 (619)
.|..+-..-.+.|..+.+||++.++.+.+.+|. ||++.+.
T Consensus 338 ~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~-~~~g~~~ 377 (800)
T TIGR01063 338 NLKELLEAFVEHRKDVITRRTIFELRKAEERAH-ILEGLLI 377 (800)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445555566788999999999998888887765 5555554
No 96
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.24 E-value=3.8e+02 Score=30.51 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhh
Q 007071 452 WNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALL 498 (619)
Q Consensus 452 y~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~L 498 (619)
..+-..-.+.|..|.+||.+.++.|.+.+| .||+.++.+++.+-.+
T Consensus 318 ~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl-~il~g~~~~i~~id~v 363 (445)
T cd00187 318 KEILQEFLDHRLEVYTRRKEYELGKAEARL-HILEGLLKAILNIDEV 363 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Confidence 334445567899999999999888877776 5777888888777544
No 97
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.90 E-value=1.4e+03 Score=28.35 Aligned_cols=129 Identities=18% Similarity=0.181 Sum_probs=71.1
Q ss_pred HHHHHHHHhH-HHhHHhhcc--cChhhHHhhhhhhhhhHHHHHHHHHhcccccccCC--CcccchHHHHHHHHHHH-HHH
Q 007071 471 KLLLVKKKLK-LTSILKGQF--PYLEEWALLDKDHTNSLLGATEALKASTLRLPVVG--KAIADVQNLKDAISSAL-DVM 544 (619)
Q Consensus 471 eLq~lkq~~K-L~~IL~~Qm--~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~--GAkaD~~slk~AL~sAv-dvM 544 (619)
+.|++||.+| -++++..|| .+=-+-++|++-|---+..++.++.----|||-.- .+|.-+.-.|..|.--. -.-
T Consensus 984 khqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ 1063 (1187)
T KOG0579|consen 984 KHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQERARLPKIQRSETKTRMAMFKKSLRINANMSN 1063 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHheeccCCCCc
Confidence 3455666666 345555565 24466788888888777778887777778888532 22222222222221100 011
Q ss_pred HHHHHHHHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 007071 545 QAMASSICLLSSKVEN--MNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSL 599 (619)
Q Consensus 545 q~i~ssi~~llpKvee--~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SL 599 (619)
.+|..-|.-|-..-+. -+....+=-.--.|=+.|.++|++-+.-+..||-+-|-|
T Consensus 1064 ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL~qlQNEKchl 1120 (1187)
T KOG0579|consen 1064 AEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIELDQLQNEKCHL 1120 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444332221 112222222333455788999999999999999887755
No 98
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.81 E-value=1.4e+03 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007071 539 SALDVMQAMASSI---CLLSSKVENMNSLTAELMSVTAKEMALLEQ 581 (619)
Q Consensus 539 sAvdvMq~i~ssi---~~llpKvee~~~lvSELa~Va~qE~~lLeE 581 (619)
.|-|+|+.+...| ..+|-||++....+.+++.-+.|-...|+.
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444433 355666666666666666666555544443
No 99
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=24.69 E-value=6.2e+02 Score=30.35 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh-HHhhc
Q 007071 460 ELRNSVTLKRIKLLLVKKKLKLTS-ILKGQ 488 (619)
Q Consensus 460 ~LR~sVa~KRieLq~lkq~~KL~~-IL~~Q 488 (619)
+-|..|..+|+++++.|.+.++.. ||++=
T Consensus 318 ~~r~~vl~rr~~~~l~k~~~r~h~~~legl 347 (635)
T PRK09631 318 EHLQKVLKMELELERAKLLEKIFAKTLEQI 347 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Confidence 668899999999999888888764 55443
No 100
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=24.58 E-value=4.4e+02 Score=25.78 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 007071 530 VQNLKDAISSALDVMQAMASSICLLSSKVENMNSL 564 (619)
Q Consensus 530 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~l 564 (619)
++.|+-.+....+.++.|.--|..+.||+|+-+.+
T Consensus 15 ~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNF 49 (150)
T PF02252_consen 15 LQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNF 49 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----SS--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcc
Confidence 45688889999999999999999999999997765
No 101
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.35 E-value=5.8e+02 Score=23.73 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=10.2
Q ss_pred hcccccccCCCccc
Q 007071 515 ASTLRLPVVGKAIA 528 (619)
Q Consensus 515 AatlRLPv~~GAka 528 (619)
...+.+||+.|+.+
T Consensus 55 ~~e~lvplg~~~yv 68 (140)
T PRK03947 55 GKETLVPIGAGSFV 68 (140)
T ss_pred CCeEEEEcCCCcEE
Confidence 45678899877765
No 102
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.33 E-value=4.9e+02 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007071 532 NLKDAISSALDVMQAMASSICLLSSKVE 559 (619)
Q Consensus 532 slk~AL~sAvdvMq~i~ssi~~llpKve 559 (619)
.+..+|.....+++++...+...-+.+.
T Consensus 231 ~l~~~l~~l~~~~~~~~~~l~~~~~~l~ 258 (291)
T TIGR00996 231 ALDDALAALSGASAQVRDLLAENRPNLP 258 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4444454444444444444443333333
No 103
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.28 E-value=1.2e+03 Score=27.21 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HhHHhhcccCh-hhHHhhhhhhhhhHHHHHHHHHhcccc
Q 007071 443 QQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKL--TSILKGQFPYL-EEWALLDKDHTNSLLGATEALKASTLR 519 (619)
Q Consensus 443 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL--~~IL~~Qm~~L-EeW~~LE~ehsssLs~a~eaL~AatlR 519 (619)
+....|+..=.+|..+..||+.-..-|=+|+++++++.- ..|-+..+|.| ++.-.+=..-. .-++.|...--
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~----~~i~~l~~~L~- 461 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVS----DEIEELSDELN- 461 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----HHHHHHHHHHh-
Confidence 445556667788888888888877777777777777653 34555566766 44333222222 33333333333
Q ss_pred cccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007071 520 LPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVE 559 (619)
Q Consensus 520 LPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKve 559 (619)
....|++.|..-|..|.+.|+.+...+..+.-.+.
T Consensus 462 -----~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~ 496 (560)
T PF06160_consen 462 -----QVPINMDEVNKQLEEAEDDVETLEEKTEELIDNAT 496 (560)
T ss_pred -----cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999988888877766554
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.99 E-value=1.8e+03 Score=29.30 Aligned_cols=37 Identities=3% Similarity=-0.037 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 440 FMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVK 476 (619)
Q Consensus 440 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lk 476 (619)
+..++..|++.|-.+=..+.++.+.+....=++..|+
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLE 327 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLE 327 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777776666666666554444444433
No 105
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.99 E-value=8.6e+02 Score=25.57 Aligned_cols=94 Identities=9% Similarity=0.078 Sum_probs=47.2
Q ss_pred ccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 007071 489 FPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAEL 568 (619)
Q Consensus 489 m~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSEL 568 (619)
+.||.+=+.||.+|+-.|..+...... .+ ....+..+...-...++.|+..=..|--++.++..-+.++
T Consensus 32 ~~f~keRa~iEe~Yak~L~kLak~~~~----~~-------~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~ 100 (269)
T cd07673 32 SDFIRERATIEEAYSRSMTKLAKSASN----YS-------QLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKY 100 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----CC-------CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777899999999999988775431 12 2223333333333333333333333333333333334555
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhH
Q 007071 569 MSVTAKEMALLEQ-CKDFSSTLSALQ 593 (619)
Q Consensus 569 a~Va~qE~~lLeE-C~eLL~~~a~Lq 593 (619)
+....+++..+.| +.+.+.....++
T Consensus 101 ~~~~~k~rK~~ke~~~~~~~~~~~~~ 126 (269)
T cd07673 101 GEEQVKSHKKTKEEVAGTLEAVQNIQ 126 (269)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHH
Confidence 5444555555443 334444444333
No 106
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.98 E-value=1.3e+03 Score=27.73 Aligned_cols=118 Identities=18% Similarity=0.080 Sum_probs=66.2
Q ss_pred HHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHH
Q 007071 430 RFVNARADATFMVQQ-LNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLG 508 (619)
Q Consensus 430 RFaNARAeaa~~~q~-~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~ 508 (619)
-|||--+.-+---+. ..-|.-|--+|..|..+|.+|-+---.|+ +|--++.++=+-||-.|+-.-. -.
T Consensus 76 DFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr--~q~se~~~~Re~k~~lldl~~v---------~~ 144 (705)
T KOG2307|consen 76 DFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALR--QQCSELCSNREKKIELLDLIYV---------LV 144 (705)
T ss_pred HHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 367765554433332 33455689999999999999987665555 4445555555555554443322 24
Q ss_pred HHHHHHhcccccccCC---CcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007071 509 ATEALKASTLRLPVVG---KAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMN 562 (619)
Q Consensus 509 a~eaL~AatlRLPv~~---GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~ 562 (619)
++|.|.-...+=|=.+ || .+++-+..-|+.+-=-|-... .+|+|++|+-.
T Consensus 145 ~ieKL~k~L~s~psk~q~~~a-~sLERiAlelnqlkf~a~h~k---~~l~p~~e~ri 197 (705)
T KOG2307|consen 145 AIEKLSKMLLSPPSKEQQDGA-TSLERIALELNQLKFHASHLK---GSLFPHSEERI 197 (705)
T ss_pred HHHHHHHHhcCCccccccccc-chHHHHHHHHHHHHHHHHHhh---cccCcchhhHH
Confidence 5566666555555444 22 234444444444443333333 33778777643
No 107
>PF04168 Alpha-E: A predicted alpha-helical domain with a conserved ER motif.; InterPro: IPR007296 This is a domain of unknown function. It sometimes occurs singly or as the C-terminal domain, in combination with another two domains of unknown function: (IPR007297 from INTERPRO) and (IPR007302 from INTERPRO).
Probab=23.91 E-value=8.2e+02 Score=25.79 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCC
Q 007071 451 IWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVG 524 (619)
Q Consensus 451 Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~ 524 (619)
-+..|..+.+.-++...-|-. -+.......| -+.=.++.++.-||.-.++.|....-.||-..
T Consensus 194 ~~~~~~~lL~~~~s~~tyRr~---y~~~~~~~~V--------l~lLl~d~~~PRSl~f~l~~l~~~L~~L~~~~ 256 (311)
T PF04168_consen 194 EYAQWEALLRSADSLETYRRR---YRSRLEPEPV--------LDLLLLDEDNPRSLAFQLNRLEEHLERLPGSH 256 (311)
T ss_pred cHHHHHHHHHHCccHHHHHHH---hcCCCCHHHH--------HHHHHcCCCCCHHHHHHHHHHHHHHHHhCccc
Confidence 456666666666665554421 1222222222 34556789999999999999999999998654
No 108
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.86 E-value=1.6e+02 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 449 KNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 449 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
+-||.+...+.+|++.|..+.-|+..||.+..-..-|..|..||.+
T Consensus 118 ~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~ 163 (200)
T PF07412_consen 118 KALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAE 163 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999887766666667666643
No 109
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.70 E-value=5.2e+02 Score=28.08 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 535 DAISSALDVMQAMASSICLLSSKVEN-MNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 535 ~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+.|..+++-+..+...+..|+.+.+. ....+.+|..++..-+..+.+-.++|..+.
T Consensus 239 ~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 239 DALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 33444444444444444455555432 444555566666666666666666666443
No 110
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.58 E-value=7.4e+02 Score=24.70 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=33.1
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAEL 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSEL 568 (619)
-+..|+.+|.+-..+|..+.++......- +..-+..+...+.+-|..-+...++|...+..=--|..+-..+..+|
T Consensus 57 ~~~~ls~~E~~L~~~L~~~~~~~~~~~~~--~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L 132 (200)
T cd07624 57 IFQLWSASETELAPLLEGVSSAVERCTAA--LEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEEL 132 (200)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555555555444433221 11222222333444444444444444444443333333333333333
No 111
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=23.36 E-value=2e+03 Score=29.74 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=76.0
Q ss_pred hcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 007071 487 GQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTA 566 (619)
Q Consensus 487 ~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvS 566 (619)
..-..|.+|-....+...-+.++...+.+. ..++..+++++..+.+.|+++..--.+|...+++...-+.
T Consensus 1439 ~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~----------~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1439 RFEKLLAEWKKKLEKLQAELDAAQRELRQL----------STELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999988888888877776543 5678899999999999999999999999999999888888
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHhhH
Q 007071 567 ELMSVT----AKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 567 ELa~Va----~qE~~lLeEC~eLL~~~a~Lq 593 (619)
|+...+ ...+.+-.||.||=.++..++
T Consensus 1509 e~~k~v~elek~~r~le~e~~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1509 EGGKRVHELEKEKRRLEQEKEELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776 335566667777666555544
No 112
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.13 E-value=1.1e+03 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHhHHHhHHhhcccChhhHHhhhh
Q 007071 476 KKKLKLTSILKGQFPYLEEWALLDK 500 (619)
Q Consensus 476 kq~~KL~~IL~~Qm~~LEeW~~LE~ 500 (619)
++...|...+..=-..|..|+.+|.
T Consensus 302 ~~~~~l~~~~~~~g~~~~~l~~~~~ 326 (503)
T KOG2273|consen 302 KRRRELASNLAELGKALAQLSALEG 326 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444443456777777776
No 113
>PF15556 Zwint: ZW10 interactor
Probab=23.07 E-value=7.7e+02 Score=25.98 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 557 KVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 557 Kvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
+++.....+..|-.-|.+|+.-|+.+.-+|.-+..||
T Consensus 156 eLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~tLq 192 (252)
T PF15556_consen 156 ELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLYTLQ 192 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555566667778999999999999998888887
No 114
>PRK04406 hypothetical protein; Provisional
Probab=22.91 E-value=4.3e+02 Score=23.04 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007071 439 TFMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLT 482 (619)
Q Consensus 439 a~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 482 (619)
.+..+...-|-+|.+.-+.|.+|.+-|++...++++++..+++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788899999999999999999999999998887654
No 115
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.48 E-value=1.7e+03 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=14.0
Q ss_pred hhhhhhhhhhcchhh------HHHHHHhH
Q 007071 414 VDAHMLRLLHNRYLQ------WRFVNARA 436 (619)
Q Consensus 414 Ed~HqLRLLhNRlLQ------WRFaNARA 436 (619)
+..-++..++++++| |-+||-.-
T Consensus 252 ~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~ 280 (1074)
T KOG0250|consen 252 DNLEQLEDLKENLEQLKAKMAWAWVNEVE 280 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666776655 77777653
No 116
>PRK05685 fliS flagellar protein FliS; Validated
Probab=21.81 E-value=5.2e+02 Score=24.31 Aligned_cols=64 Identities=9% Similarity=0.302 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhh----hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLS--SKVENM----NSLTAELMS-VTAKEMALLEQCKDFSSTLSA 591 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~ll--pKvee~----~~lvSELa~-Va~qE~~lLeEC~eLL~~~a~ 591 (619)
.|.+...++|..|.+++.++.+++..-- +=++.. .+...+|.. ....+.+.|+||..+|..+..
T Consensus 49 ~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~~~l~ev~~il~~Lre 119 (132)
T PRK05685 49 GDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRNDVQAIDEVEGLLREIKE 119 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888999999999999999988885422 112221 122333332 345567889999998887653
No 117
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.73 E-value=2.4e+02 Score=30.04 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 007071 533 LKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDCSLRTHII 604 (619)
Q Consensus 533 lk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~li 604 (619)
+...+..++-..+.+......|.-.+.+.-....+|.....+.+..|.|...++..+..|+-|..-||..|.
T Consensus 36 ~~~~~~~~~s~~~~v~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 36 IRQVVGTVLSPVQSVVAAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred ceeeeccchhHHHHHHhhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455556666666666777777777777777888888999999999999999999999999999987654
No 118
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=21.58 E-value=5e+02 Score=24.24 Aligned_cols=61 Identities=10% Similarity=0.226 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHH
Q 007071 528 ADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAEL--------M-SVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 528 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSEL--------a-~Va~qE~~lLeEC~eLL~~~a 590 (619)
.|++...+.|..|.+++.++.+++.. .+-.++..-+..| . .....+.+.|+|+..+|..+.
T Consensus 45 ~d~~~~~~~i~ka~~Ii~eL~~~Ld~--e~ggeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~~l~~Lr 114 (124)
T TIGR00208 45 DDIERKNENLIKAQNIIQELNFTLDR--EKNIELSASLGALYDYMYRRLVQANIKNDTSKLAEVEGYVRDFR 114 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCC--ccchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999888742 2223333333333 2 223445668899988888764
No 119
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=21.53 E-value=1.1e+03 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.120 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 562 NSLTAELMSVTAKEMALLEQCKDFSSTL 589 (619)
Q Consensus 562 ~~lvSELa~Va~qE~~lLeEC~eLL~~~ 589 (619)
..-|..|-+.-.+|++.|+|.+.+|..=
T Consensus 298 ~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 298 IQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445667778888999999999887543
No 120
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=21.26 E-value=8.5e+02 Score=24.48 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=51.1
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 007071 493 EEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVT 572 (619)
Q Consensus 493 EeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va 572 (619)
|-|..|| ||-.+|.-+.....--+..|=.... .|... .+.. .-+.....+..+.-|+++|..++...+.+=
T Consensus 81 eL~~~le-Ehq~alelIM~KyReq~~~l~~~~k--~~~~~---~~~~---~~~~~~~~~~~~~~kI~EM~~vM~~ai~~d 151 (181)
T PF05769_consen 81 ELRQSLE-EHQSALELIMSKYREQMSQLMMASK--FDDTE---PYLE---ANEQLSKEVQSQAEKICEMAAVMRKAIELD 151 (181)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh--hhhhh---HHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 4555554 5666777776666655444432211 11111 1111 122344556666777888777777766533
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 007071 573 AKEMALLEQCKDFSSTLSALQIKDCSLRTHI 603 (619)
Q Consensus 573 ~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~l 603 (619)
.+.- .+.-..++.|..|-.-||-.|
T Consensus 152 e~~~------~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 152 EENS------QEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred hhhh------HhHHHHHHHHHHHHHHHHHHH
Confidence 2221 133445677788888888654
No 121
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=21.25 E-value=5.3e+02 Score=26.60 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=63.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHH
Q 007071 431 FVNARADATFMVQQLNAEKNIWNAWVTISELRNSV---TLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLL 507 (619)
Q Consensus 431 FaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sV---a~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs 507 (619)
++|+.++..+. .+..+++.|+.=-....++...+ .++-.+.+...+-.+|...|..|..-+++.-..-+.+...-+
T Consensus 15 l~~~~~~~~~~-~~~~~~~~l~~R~~~~~~~~~~~~~~~e~~~d~~~~~k~~~l~~~l~~~~~~~~~ll~~l~~~f~D~s 93 (240)
T TIGR02568 15 LADAAEELRFA-ELEAARKALQSRKVALEEKAELLSEYLERVLDADADQKLKELRAELSGQAAGLEQLLALARGAFPDPS 93 (240)
T ss_pred HHHHHHHHHHH-HhhhhHHHHHHhcccHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcccCCCHHHHHHHHHhhCCChH
Confidence 45665555532 33444455555533333333332 344556666666778888999888888877666677777888
Q ss_pred HHHHHHHhcccccccCCCcccch
Q 007071 508 GATEALKASTLRLPVVGKAIADV 530 (619)
Q Consensus 508 ~a~eaL~AatlRLPv~~GAkaD~ 530 (619)
...-+|.+...+.++....+-.+
T Consensus 94 ~~~laL~~ll~~~~~~~~~~~~l 116 (240)
T TIGR02568 94 DQALALRAALQRLELDPAERKAL 116 (240)
T ss_pred HHHHHHHHHHHhccCChhHHHHH
Confidence 88888888888888776665333
No 122
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=20.97 E-value=6.7e+02 Score=28.61 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007071 532 NLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAK 574 (619)
Q Consensus 532 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~q 574 (619)
.+.+++....+.++.|...+......++++...+.+++.++.+
T Consensus 444 ~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 444 EIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555554444
No 123
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=20.85 E-value=2.8e+02 Score=25.47 Aligned_cols=64 Identities=20% Similarity=0.388 Sum_probs=47.8
Q ss_pred hcccChhhHHhhhhhhhhhHHHHHHHHHhcccccc-cCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 007071 487 GQFPYLEEWALLDKDHTNSLLGATEALKASTLRLP-VVGKAIADVQNLKDAISSALDVMQAMASSI 551 (619)
Q Consensus 487 ~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLP-v~~GAkaD~~slk~AL~sAvdvMq~i~ssi 551 (619)
..-.|=+.|..||+.|-..- .++.++......|| +..+=...+..+.+.|..++.-|..++-.+
T Consensus 52 ~~~~Y~~a~~~L~~~yg~~~-~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~ 116 (145)
T PF03564_consen 52 SEENYEEAWELLEERYGNPR-RIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALGVNV 116 (145)
T ss_pred cchhhHHHHHHHHHHhCCch-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34558899999999988653 36688888888999 666666667777778888877777765433
No 124
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.85 E-value=7.7e+02 Score=25.47 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHhhhhhh
Q 007071 540 ALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLS---ALQIKDCSLRT 601 (619)
Q Consensus 540 AvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a---~LqVeE~SLR~ 601 (619)
..+++..+...+..+.-++++....+.++-++..+=+.|-+|..+|-.... .++-|-.-||.
T Consensus 43 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 43 VGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666666666666666666655555 33344444444
No 125
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.38 E-value=95 Score=29.88 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=10.4
Q ss_pred hcccccccCCCcc
Q 007071 515 ASTLRLPVVGKAI 527 (619)
Q Consensus 515 AatlRLPv~~GAk 527 (619)
...+-+|+++|+.
T Consensus 48 ~~eiLVPLg~slY 60 (130)
T PRK01203 48 SKELLISIGSGIF 60 (130)
T ss_pred CCeEEEEccCCce
Confidence 4568899999984
No 126
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=20.36 E-value=88 Score=28.01 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhhccc--ChhhHHhhhhhhhhhHHHHHHHH
Q 007071 459 SELRNSVTLKRIKLLLVKKKLKLTSILKGQFP--YLEEWALLDKDHTNSLLGATEAL 513 (619)
Q Consensus 459 s~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~--~LEeW~~LE~ehsssLs~a~eaL 513 (619)
.+||.-|..-| +.|..++. ...+|.|++ .|+.|..|+.+-..-|..+.+.+
T Consensus 6 ~~ir~rV~~Ar-~~Q~~R~~---~~~~Na~l~~~~l~~~~~l~~~~~~~l~~~~~~~ 58 (96)
T PF13335_consen 6 AEIRERVEAAR-ERQRERYG---GIKCNAQLPGEELRKYCPLSSEAKKLLEQAAEKL 58 (96)
T ss_pred HHHHHHHHHHH-HHHHHHcC---CCCccccCCHHHHHhHcCCCHHHHHHHHHHHHHc
Confidence 46777777665 56666655 557788887 78888888887666666555543
No 127
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.29 E-value=5.9e+02 Score=24.80 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 007071 542 DVMQAMASSICLLSSKVENMNSLTAEL----MSVTAKEMALLEQCKDFSSTLSALQIKDCSL 599 (619)
Q Consensus 542 dvMq~i~ssi~~llpKvee~~~lvSEL----a~Va~qE~~lLeEC~eLL~~~a~LqVeE~SL 599 (619)
+-++.....+..++-.++++...+.+| ..|..+=..+.++|.+||..=..|+.--..+
T Consensus 7 ~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I 68 (157)
T PF04136_consen 7 DYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEI 68 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555544 5677777888888888888766665433333
No 128
>PRK04325 hypothetical protein; Provisional
Probab=20.17 E-value=4.6e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007071 440 FMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLT 482 (619)
Q Consensus 440 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 482 (619)
+..+...-|-+|...-.+|.+|.+.|++...++.+|+..+++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788889999999999999999999999888776543
No 129
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.10 E-value=7.5e+02 Score=29.26 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhH
Q 007071 529 DVQNLKDAISSALDVMQAMASSIC-LLSSKVENMNSLTAELMSVTAK----------EMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 529 D~~slk~AL~sAvdvMq~i~ssi~-~llpKvee~~~lvSELa~Va~q----------E~~lLeEC~eLL~~~a~Lq 593 (619)
+.+.|...|+...+-++.+...+. .+-..|.+++.++.||+++-.| --.|++|=..||..++.+-
T Consensus 147 ~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~~v 222 (627)
T PRK06665 147 RAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSSLI 222 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhc
Confidence 344666666666666666666444 3445678888888888766543 2369999999999998874
Done!