Query 007071
Match_columns 619
No_of_seqs 105 out of 122
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zww_A SH3-containing GRB2-lik 66.1 1E+02 0.0035 30.1 15.1 116 425-590 113-237 (256)
2 1nfv_A Bacterioferritin; 24 su 63.5 86 0.0029 28.3 12.4 103 491-595 48-152 (179)
3 1jgc_A Bacterioferritin, BFR; 62.8 75 0.0026 27.8 11.1 105 491-597 43-149 (161)
4 1wlq_A Geminin; coiled-coil; 2 61.2 17 0.0006 31.2 6.2 46 449-494 31-76 (83)
5 2y3q_A Bacterioferritin; metal 55.2 1E+02 0.0036 26.8 10.6 104 491-596 43-148 (158)
6 3ghg_A Fibrinogen alpha chain; 54.3 18 0.00062 40.2 6.4 122 462-606 63-188 (562)
7 1wp7_A Fusion protein; fusion 48.9 18 0.00063 31.4 4.3 61 530-590 22-83 (89)
8 2z0v_A SH3-containing GRB2-lik 48.0 2E+02 0.0068 27.8 14.4 56 535-590 165-221 (240)
9 2yfa_A MCPS, methyl-accepting 46.5 1.9E+02 0.0065 27.1 12.0 47 524-570 82-128 (258)
10 2vzb_A Putative bacterioferrit 45.7 1.6E+02 0.0054 26.0 10.4 101 491-592 54-163 (170)
11 3oj5_A Ferritin family protein 41.8 1.9E+02 0.0064 26.7 10.6 102 491-593 47-150 (189)
12 1deq_A Fibrinogen (alpha chain 39.7 1.7E+02 0.0058 31.4 10.8 34 532-565 124-157 (390)
13 2jd6_0 Ferritin homolog, ferri 38.7 1.8E+02 0.0062 26.1 9.8 102 491-593 42-145 (174)
14 2zxx_A Geminin; coiled-coil, c 38.2 63 0.0022 27.5 5.9 45 450-494 28-72 (79)
15 3qb9_A Bacterioferritin, BFR; 37.9 2.2E+02 0.0075 25.4 10.4 105 491-597 45-151 (174)
16 3uno_A Probable bacterioferrit 36.7 2.6E+02 0.009 26.3 10.8 97 496-593 52-150 (189)
17 1t6f_A Geminin; coiled-coil, c 33.9 73 0.0025 23.6 4.8 30 451-480 2-31 (37)
18 1vh6_A Flagellar protein FLIS; 32.1 1.7E+02 0.0057 27.0 8.3 61 527-591 46-115 (145)
19 3vkg_A Dynein heavy chain, cyt 31.6 1.1E+03 0.039 31.8 19.1 40 449-488 1927-1968(3245)
20 1vlg_A Ferritin; TM1128, struc 31.3 3E+02 0.01 25.0 10.4 101 491-592 56-158 (176)
21 2dfs_A Myosin-5A; myosin-V, in 29.9 4.1E+02 0.014 31.7 13.2 21 587-607 1023-1043(1080)
22 2wvr_A Geminin; DNA replicatio 29.3 94 0.0032 30.7 6.4 46 449-494 108-153 (209)
23 3uoi_A Bacterioferritin, BFR; 29.3 2.9E+02 0.0099 24.1 11.0 102 492-595 46-149 (161)
24 1m1j_B Fibrinogen beta chain; 28.4 3E+02 0.01 30.1 10.8 29 537-565 130-158 (464)
25 1uii_A Geminin; human, DNA rep 27.5 1.3E+02 0.0045 25.8 6.2 43 450-492 40-82 (83)
26 2fkz_A Bacterioferritin; ferro 27.3 2.9E+02 0.01 23.6 11.7 104 491-596 43-148 (155)
27 3oja_B Anopheles plasmodium-re 26.3 3.2E+02 0.011 29.1 10.5 27 588-614 559-585 (597)
28 2v2p_A Ferritin light chain; m 26.3 3.8E+02 0.013 24.5 11.1 108 496-604 55-166 (174)
29 3haj_A Human pacsin2 F-BAR; pa 25.7 6.2E+02 0.021 26.9 13.2 42 471-515 27-68 (486)
30 3bvf_A Ferritin; iron storage, 25.6 3.7E+02 0.013 24.7 9.6 101 491-592 56-158 (181)
31 2qqy_A Sigma B operon; dodecam 24.6 3.2E+02 0.011 23.2 9.3 94 491-588 47-143 (149)
32 3kxu_A Ferritin; iron storage 24.3 4.2E+02 0.014 25.1 9.9 97 496-593 56-156 (191)
33 3efg_A Protein SLYX homolog; x 23.9 1.9E+02 0.0067 24.1 6.6 42 440-481 12-53 (78)
34 4am5_A Bacterioferritin; metal 23.0 4E+02 0.014 23.6 10.6 105 496-603 48-154 (159)
35 2p0v_A Hypothetical protein BT 22.6 47 0.0016 36.6 3.2 84 461-546 108-219 (489)
36 3l39_A Putative PHOU-like phos 22.4 4E+02 0.014 25.5 9.5 62 517-583 86-147 (227)
37 2clb_A DPS-like protein; DI-ir 22.3 4.7E+02 0.016 24.2 9.8 79 491-569 62-149 (188)
38 3ka8_A Ferritin, middle subuni 21.9 4.7E+02 0.016 24.1 13.2 97 496-593 56-156 (176)
39 3i9w_A Sensor protein TORS; st 21.9 6.5E+02 0.022 25.7 13.9 29 420-448 100-128 (290)
40 3abh_A Pacsin2, protein kinase 21.7 3.7E+02 0.013 26.3 9.3 27 489-515 49-75 (312)
41 3ter_A Mammalian stromal inter 20.6 2.1E+02 0.0071 26.6 6.6 62 440-501 50-126 (136)
No 1
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=66.06 E-value=1e+02 Score=30.11 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=71.0
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhhHH
Q 007071 425 RYLQWRFVNARADATFMVQQLNAEKNIWN--------AWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEEWA 496 (619)
Q Consensus 425 RlLQWRFaNARAeaa~~~q~~~AE~~Ly~--------~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~ 496 (619)
=+.+|--+..+-..+...+....++.+.. -|..|.+.|+.+..+|+.+...|.+++=
T Consensus 113 aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k--------------- 177 (256)
T 1zww_A 113 ALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGK--------------- 177 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 34444444444444444444444444333 5666677899999999998888765431
Q ss_pred hhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHH
Q 007071 497 LLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAELMSVTAKE 575 (619)
Q Consensus 497 ~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa~Va~qE 575 (619)
.+ .+.|..|.+-.+.....+...|+.+-+. ...+..|...+.-+
T Consensus 178 ----------------------------~~-------eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQ 222 (256)
T 1zww_A 178 ----------------------------IP-------DEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQ 222 (256)
T ss_dssp ----------------------------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ----------------------------cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 02 3334444444444444444445554443 34558888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007071 576 MALLEQCKDFSSTLS 590 (619)
Q Consensus 576 ~~lLeEC~eLL~~~a 590 (619)
.....+|-++|..+.
T Consensus 223 l~y~~~~~e~L~~l~ 237 (256)
T 1zww_A 223 LEYHKQAVQILQQVT 237 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
No 2
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=63.53 E-value=86 Score=28.34 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=69.2
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hH-HHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NS-LTAEL 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~-lvSEL 568 (619)
++++-+.-|.+|..-|...+..|-.... +........+ .++.++|..+++.-..+...+..+...+++. +. ...-|
T Consensus 48 ~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-~~~~~~~~~~-~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l 125 (179)
T 1nfv_A 48 NMKLIAIDEMRHAENFAERIKELGGEPT-TQKEGKVVTG-QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLF 125 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCSSCCCCS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCc-CCCCCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566677888999988888887754321 1111111222 3688899999999888888888888866542 22 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQIK 595 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~LqVe 595 (619)
-.++..|...+..-.++|..+..+..+
T Consensus 126 ~~~~~eEe~h~~~l~~~l~~l~~~g~~ 152 (179)
T 1nfv_A 126 ERIIEEEQAHLTYYENIGSHIKNLGDT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 566777888888888888888776654
No 3
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=62.84 E-value=75 Score=27.78 Aligned_cols=105 Identities=8% Similarity=-0.000 Sum_probs=70.6
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHH-HH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTA-EL 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvS-EL 568 (619)
++++...=|.+|..-+...+..|-....--+ ......+ .++.++|..+++.-+.+...+..+...+++ -+..+. -|
T Consensus 43 ~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~-~~~~~~~-~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l 120 (161)
T 1jgc_A 43 KSREESIEEMGHADKIIARILFLEGHPNLQK-LDPLRIG-EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIF 120 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-CCCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-CCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566688888999888888877754321111 1112222 367788888888888888888888877755 233333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQIKDC 597 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~LqVeE~ 597 (619)
-.++..|...+....++|..+..+-.+++
T Consensus 121 ~~~~~ee~~h~~~l~~~l~~l~~~g~~~y 149 (161)
T 1jgc_A 121 ESLITDEEGHVDFLETQISLYDRLGPQGF 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 46777888888888888888877776555
No 4
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=61.23 E-value=17 Score=31.24 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 449 KNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 449 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
+-||.+...+.+|++.|..|+=|+..+|.+.+...-|-.|..||.+
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999998888888888864
No 5
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=55.25 E-value=1e+02 Score=26.78 Aligned_cols=104 Identities=8% Similarity=0.084 Sum_probs=67.9
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHH-HHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSL-TAEL 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~l-vSEL 568 (619)
++++-+.=|.+|..-+...+..|-....--++ .....+ .++.++|..+++.-..+...+..+...+++. +.. ..-|
T Consensus 43 ~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~-~~~~~~-~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l 120 (158)
T 2y3q_A 43 VEYHESIDEMKHADRYIERILFLEGLPNLQDL-GKLNIG-EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC-CCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCC-CcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555667788888888887777543211111 111222 4677888888888888888888888877542 332 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQIKD 596 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~LqVeE 596 (619)
-.++..|...+....++|..+..+..++
T Consensus 121 ~~~~~ee~~h~~~l~~~l~~l~~~g~~~ 148 (158)
T 2y3q_A 121 IEILRDEEGHIDWLETELDLIQKMGLQN 148 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 5677778888888888888877776543
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.31 E-value=18 Score=40.19 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhH-HHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHH
Q 007071 462 RNSVTLKRIKLLLVKKKLK-LTSILKGQFPYLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSA 540 (619)
Q Consensus 462 R~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sA 540 (619)
.+.|...|-+|+.+++.-| .+.+.+..|.+|.+=-.-..++-+.+..+.+-|+-- ++.|++-|..=
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRr-------------IqyLKekVdnQ 129 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSR-------------IEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 3444444445555555444 455566667777443333335555666666555543 45667777777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh---hhhhhhhhh
Q 007071 541 LDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLSALQIKDC---SLRTHIIQR 606 (619)
Q Consensus 541 vdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a~LqVeE~---SLR~~liQ~ 606 (619)
+..++.+.++|..++.|+.....-|. .-|+.|+.=-.+..+-+|.-. -++-||.|+
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDId----------iqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDID----------IKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 77777888888888777776554442 236677766655555555332 344555555
No 7
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=48.86 E-value=18 Score=31.41 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 530 VQNLKDAISSALDVMQAMASSICL-LSSKVENMNSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 530 ~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+++|.+++++-+=.+++|-.-|.+ |.|-+.+|+..++.+-.-..|-+..+.|+..||.++-
T Consensus 22 V~EVt~glsqlaVAIqaIQD~IN~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (89)
T 1wp7_A 22 VVKLQETAEKTVYVLTALQDYGGSGGSGGKVDISSQISSMNQSLQQSKDYIKEAQRLLDTVN 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345666666666666666555544 4567788888888888999999999999999998753
No 8
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=48.05 E-value=2e+02 Score=27.81 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007071 535 DAISSALDVMQAMASSICLLSSKVENM-NSLTAELMSVTAKEMALLEQCKDFSSTLS 590 (619)
Q Consensus 535 ~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa~Va~qE~~lLeEC~eLL~~~a 590 (619)
+.|..|.+.++.....+...|+.+-+. ...+..|...+.-.....++|-++|..+.
T Consensus 165 eEl~~A~~~fe~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~ 221 (240)
T 2z0v_A 165 EEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQ 221 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443 45556888999999999999999998764
No 9
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=46.47 E-value=1.9e+02 Score=27.11 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=21.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 007071 524 GKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMS 570 (619)
Q Consensus 524 ~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~ 570 (619)
..+..++.....++..-++..+.+......|.+...++..++.+|..
T Consensus 82 ~~i~~~~~~Y~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 128 (258)
T 2yfa_A 82 GELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQ 128 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555544444444444444444444433
No 10
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=45.74 E-value=1.6e+02 Score=25.98 Aligned_cols=101 Identities=10% Similarity=0.125 Sum_probs=62.4
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccc-----c--CCC-cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLP-----V--VGK-AIADVQNLKDAISSALDVMQAMASSICLLSSKVENMN 562 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLP-----v--~~G-AkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~ 562 (619)
+|++.+.=|.+|..-+...+..|-....--+ . .+. ...+. .+.++|..+++.-+.+...+..+...+++-+
T Consensus 54 ~f~~~a~ee~~Had~lae~i~~lGg~p~~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~D 132 (170)
T 2vzb_A 54 EFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKYDSPTAF-DSVSLLNQNVSSERCAILRYQEIANFTNGKD 132 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGHHHHCSSCCCCCCSC-BHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHhhcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5677788888999888888877654211100 0 000 11112 3778888888888888888888888776434
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 007071 563 SLTAEL-MSVTAKEMALLEQCKDFSSTLSAL 592 (619)
Q Consensus 563 ~lvSEL-a~Va~qE~~lLeEC~eLL~~~a~L 592 (619)
....++ -.++..|...+...+++|..+..+
T Consensus 133 ~~t~~~l~~~~~ee~~h~~~l~~~l~~l~~~ 163 (170)
T 2vzb_A 133 YTTCDIAKHILAEEEEHEQDLQDYLTDIARM 163 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333 355555666666666666655443
No 11
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=41.81 E-value=1.9e+02 Score=26.72 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=67.0
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHH-
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAEL- 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSEL- 568 (619)
++++-..=|.+|..-|..-+..|-.... +.-......+..++.++|..+++.-+.+...+..+...+++. +....++
T Consensus 47 ~f~~~a~ee~~Had~laeri~~lGg~p~-~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l 125 (189)
T 3oj5_A 47 HFYSQAVEERNHAMMLVQHLLDRDLRVE-IPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFM 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCee-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 4555667778888888888887766533 111122223334788999999999999999999988877653 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
-.++..|...+...+++|..+..+-
T Consensus 126 ~~~l~eqe~~~~~l~~~l~~l~~~g 150 (189)
T 3oj5_A 126 QWFLQEQIEEVALMATLVRVADRAG 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555556666666777776666543
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.72 E-value=1.7e+02 Score=31.41 Aligned_cols=34 Identities=3% Similarity=0.049 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 007071 532 NLKDAISSALDVMQAMASSICLLSSKVENMNSLT 565 (619)
Q Consensus 532 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lv 565 (619)
.|++-|..=+.-|..|...|+.++.|+..++.-|
T Consensus 124 ~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 124 ILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666666666666666665555
No 13
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=38.68 E-value=1.8e+02 Score=26.14 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=67.3
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAELM 569 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSELa 569 (619)
++++-+.=|.+|..-+..-+..|-.... +.-......+..++.++|..+++.-..+...+..+...+++- +....++-
T Consensus 42 ~f~~~a~ee~~had~laeri~~lGg~p~-~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l 120 (174)
T 2jd6_0 42 WMKAQAEEEIGHALRFYNYIYDRNGRVE-LDEIPKPPKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFL 120 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 4566677788899888888887766532 211122233345788999999999999999999988877652 44444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhH
Q 007071 570 -SVTAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 570 -~Va~qE~~lLeEC~eLL~~~a~Lq 593 (619)
.++.+|...+...+++|..+..+.
T Consensus 121 ~~~l~eq~e~~~~l~~~l~~l~~~g 145 (174)
T 2jd6_0 121 EWFINEQVEEEASVKKILDKLKFAK 145 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555566666777777666554
No 14
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.15 E-value=63 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 450 NIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 450 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
-|+.+..-.-+|+..|.+|.-++-.+|.+.+-..-|..|..||.+
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998877777777777643
No 15
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=37.91 E-value=2.2e+02 Score=25.40 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=67.4
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHH-
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSLTAEL- 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~lvSEL- 568 (619)
++++-+.=|.+|..-+...+..|..... ++....... ..++.++|..+++.-..+...+..+.-.+++. +..+.++
T Consensus 45 ~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-~~~i~~~~~-~~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l 122 (174)
T 3qb9_A 45 HTRAESFDEMRHAEEITDRILLLDGLPN-YQRIGSLRI-GQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLL 122 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CSCCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccc-ccCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566677778888888877777653211 110111111 13577888888888888888888888666542 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQIKDC 597 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~LqVeE~ 597 (619)
-.++.+|...+..-.++|..+..+-++++
T Consensus 123 ~~~l~eEe~h~~~l~~~l~~i~~~g~~~y 151 (174)
T 3qb9_A 123 EKIVADEEEHIDYLETQLELMDKLGEELY 151 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 35777788888888888888877765444
No 16
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=36.66 E-value=2.6e+02 Score=26.34 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=69.3
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHH-HHHHHH
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAE-LMSVTA 573 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSE-La~Va~ 573 (619)
+.=|.+|+.-|..-+..+..... |+-....+.+..++.++|..|++.=..+...+..+.-.+++ -+...++ |-....
T Consensus 52 A~EE~~HA~~l~~~i~~rGG~~~-l~~i~~p~~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~fL~ 130 (189)
T 3uno_A 52 AVEERNHAMMLVQHLLDRDLRVE-IPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQ 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc-cCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45577788877777777766543 22223335556788999999999988888888888887775 4545444 345667
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 007071 574 KEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 574 qE~~lLeEC~eLL~~~a~Lq 593 (619)
+|...+++.+++|..+..+-
T Consensus 131 EQve~~~~l~~~l~~l~~~g 150 (189)
T 3uno_A 131 EQIEEVALMATLVRVADRAG 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77888888999998887775
No 17
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.85 E-value=73 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007071 451 IWNAWVTISELRNSVTLKRIKLLLVKKKLK 480 (619)
Q Consensus 451 Ly~~W~~is~LR~sVa~KRieLq~lkq~~K 480 (619)
||.+.....+|...+.+|-=|+.+||.+.+
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 899999999999999999999999998865
No 18
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=32.07 E-value=1.7e+02 Score=26.95 Aligned_cols=61 Identities=7% Similarity=0.216 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHh
Q 007071 527 IADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAEL--------M-SVTAKEMALLEQCKDFSSTLSA 591 (619)
Q Consensus 527 kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSEL--------a-~Va~qE~~lLeEC~eLL~~~a~ 591 (619)
..|++.-.+.|..|.+++.++..++..- .|+..-+..| . .-+....+.|+||..+|..+..
T Consensus 46 ~~d~~~k~~~i~KA~~Ii~eL~~sLd~e----geiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~Lre 115 (145)
T 1vh6_A 46 NDDMERKNENLIKAQNIIQELNFTLNRN----IELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRD 115 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3588899999999999999999988654 4444333333 2 2234567889999999987754
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.60 E-value=1.1e+03 Score=31.79 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHhHHhhc
Q 007071 449 KNIWNAWVTISELRNSVTLKRIKLLLVKKKL--KLTSILKGQ 488 (619)
Q Consensus 449 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~--KL~~IL~~Q 488 (619)
.+|-.+-..+.+|+...+.++.+|+..+++. +|..|...|
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~ 1968 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888776663 466666554
No 20
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=31.30 E-value=3e+02 Score=25.00 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=63.1
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELM 569 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa 569 (619)
++++-+.=|.+|+.-+..-+..|-.... +.-......+..++.++|..+++.-..+...+..+...+++ -+.....+-
T Consensus 56 ~f~~~a~EE~~HAd~l~eri~~lGg~~~-l~~i~~p~~~~~~~~e~le~~l~~E~~v~~~~~~l~~~A~~~~D~~t~~~l 134 (176)
T 1vlg_A 56 WMKKQAQEELTHAMKFYEYIYERGGRVE-LEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFL 134 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCee-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 4455567788888888888887766532 22112223344578899999999999998888888887776 344444443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhh
Q 007071 570 S-VTAKEMALLEQCKDFSSTLSAL 592 (619)
Q Consensus 570 ~-Va~qE~~lLeEC~eLL~~~a~L 592 (619)
. ...++........++|..+..+
T Consensus 135 ~~~l~eq~ee~~~l~~~l~~l~~~ 158 (176)
T 1vlg_A 135 KWFVDEQVEEEDQVREILDLLEKA 158 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 3333234444556666655544
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.92 E-value=4.1e+02 Score=31.75 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=9.9
Q ss_pred HHHHhhHHHhhhhhhhhhhhc
Q 007071 587 STLSALQIKDCSLRTHIIQRN 607 (619)
Q Consensus 587 ~~~a~LqVeE~SLR~~liQ~~ 607 (619)
..+..|+-+-.-||.++-++.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445444455555444443
No 22
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.35 E-value=94 Score=30.73 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccChhh
Q 007071 449 KNIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYLEE 494 (619)
Q Consensus 449 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LEe 494 (619)
+.||.+...+-+|++.|..+.=|+..+|++++-..-|-.|..||.+
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999998888888888877754
No 23
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=29.27 E-value=2.9e+02 Score=24.14 Aligned_cols=102 Identities=10% Similarity=0.058 Sum_probs=68.0
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-h-HHHHHHH
Q 007071 492 LEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-N-SLTAELM 569 (619)
Q Consensus 492 LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~-~lvSELa 569 (619)
+++-..=|.+|..-+...+..|-....--++ .....+ .++.++|..+++.-..+...+..+...+++. + ....=|-
T Consensus 46 f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~-~~~~~~-~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~ 123 (161)
T 3uoi_A 46 TRAESFDEMRHAEEITDRILLLDGLPNYQRI-GSLRIG-QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLE 123 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC-CCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCCCC-CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444666777888887777776542211111 122223 4788889999998888888888888777652 3 3334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007071 570 SVTAKEMALLEQCKDFSSTLSALQIK 595 (619)
Q Consensus 570 ~Va~qE~~lLeEC~eLL~~~a~LqVe 595 (619)
.++..|........++|..+..+-++
T Consensus 124 ~~~~eee~h~~~l~~~l~~i~~~g~~ 149 (161)
T 3uoi_A 124 KIVADEEEHIDYLETQLELMDKLGEE 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 67777888888888888888777653
No 24
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.45 E-value=3e+02 Score=30.12 Aligned_cols=29 Identities=3% Similarity=-0.034 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 007071 537 ISSALDVMQAMASSICLLSSKVENMNSLT 565 (619)
Q Consensus 537 L~sAvdvMq~i~ssi~~llpKvee~~~lv 565 (619)
+..--..+..++..|..+.-++|+....+
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433333
No 25
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.47 E-value=1.3e+02 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhcccCh
Q 007071 450 NIWNAWVTISELRNSVTLKRIKLLLVKKKLKLTSILKGQFPYL 492 (619)
Q Consensus 450 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L 492 (619)
.|+.+..-+-+|++.|..+.=++..+|++++...-|-.|..||
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999988777777776665
No 26
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=27.31 E-value=2.9e+02 Score=23.59 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=67.2
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHH-H
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAE-L 568 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSE-L 568 (619)
++++...=|.+|..-|...+..|-....--.+ .....+ .++.++|..+++.-..+...+..+...+++ -+....+ |
T Consensus 43 ~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~-~~~~~~-~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l 120 (155)
T 2fkz_A 43 HEYHESIDEMKHADKLIKRILFLEGLPNLQEL-GKLLIG-EHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELL 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC-CCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555677788888888887776543111000 111112 267888889999888888888888888865 2333333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 007071 569 MSVTAKEMALLEQCKDFSSTLSALQIKD 596 (619)
Q Consensus 569 a~Va~qE~~lLeEC~eLL~~~a~LqVeE 596 (619)
-.++..|...+...+++|..+..+-.++
T Consensus 121 ~~~~~eee~h~~~l~~~l~~i~~~g~~~ 148 (155)
T 2fkz_A 121 EDILESEEDHIDWLETQLDLIDKIGLEN 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 4566777777777777887777665443
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.33 E-value=3.2e+02 Score=29.14 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=12.0
Q ss_pred HHHhhHHHhhhhhhhhhhhccccccCc
Q 007071 588 TLSALQIKDCSLRTHIIQRNCVTTTSS 614 (619)
Q Consensus 588 ~~a~LqVeE~SLR~~liQ~~~~~~~~~ 614 (619)
.+..|.-|=.-++..+-|+.+....+-
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333444333344566666666554443
No 28
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=26.32 E-value=3.8e+02 Score=24.55 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=75.2
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHH--H
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKA-IADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELMS--V 571 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GA-kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa~--V 571 (619)
+.=|.+|+.-|..-+.-+-....-=++ ..- +.+..++.++|..|++.=..+...+..+.-.+++ -+....++-+ .
T Consensus 55 s~EE~~HA~~l~~~i~~rgg~~~l~~i-~~p~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~t~~fLe~~~ 133 (174)
T 2v2p_A 55 AQQKMQGAERLLKMQNQRGGRALFQDL-QKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHF 133 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCC-CCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCC-CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455778888888777777665432222 222 4444689999999999999999999999888876 5666777654 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 007071 572 TAKEMALLEQCKDFSSTLSALQIKDCSLRTHII 604 (619)
Q Consensus 572 a~qE~~lLeEC~eLL~~~a~LqVeE~SLR~~li 604 (619)
..+|...++...++|..+..+-..+..+=-+++
T Consensus 134 l~eq~e~~~~l~~~l~~l~~~g~~~~~~g~~l~ 166 (174)
T 2v2p_A 134 LDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLF 166 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcceeeee
Confidence 777777788888888888776544333333333
No 29
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.75 E-value=6.2e+02 Score=26.86 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHhHHhhcccChhhHHhhhhhhhhhHHHHHHHHHh
Q 007071 471 KLLLVKKKLKLTSILKGQFPYLEEWALLDKDHTNSLLGATEALKA 515 (619)
Q Consensus 471 eLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~ehsssLs~a~eaL~A 515 (619)
-++++++.+++..-| +.||.+=+.||.+|+-.|..+...+..
T Consensus 27 L~~r~~~g~~~~~el---~~f~keRa~iE~eYAk~L~kLakk~~~ 68 (486)
T 3haj_A 27 TVKRIDDGHRLCSDL---MNCLHERARIEKAYAQQLTEWARRWRQ 68 (486)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666655444 458888899999999999999887643
No 30
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=25.59 E-value=3.7e+02 Score=24.74 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=62.9
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELM 569 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa 569 (619)
++++.+.=|.+|+.-|..-+..+-... .|+-......+..++.++|..+++.=..+...+..+.-.+++ -+....++-
T Consensus 56 ~f~~~a~EE~~HA~~l~e~i~~lGG~p-~l~~i~~p~~~~~~~~e~le~aL~~E~~~~~~~~~l~~~A~~~~D~~t~~~l 134 (181)
T 3bvf_A 56 FLFDHAAEEYEHAKKLIIFLNENNVPV-QLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFL 134 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC-CCCCBCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCc-ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 445556667788888888887765543 222222233444578899999999988888888888887764 455555544
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhh
Q 007071 570 S-VTAKEMALLEQCKDFSSTLSAL 592 (619)
Q Consensus 570 ~-Va~qE~~lLeEC~eLL~~~a~L 592 (619)
+ ++.+|.+......++|..+..+
T Consensus 135 ~~~l~eqvEe~~~l~~~l~~l~~~ 158 (181)
T 3bvf_A 135 QWYVAEQHEEEVLFKDILDKIELI 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3333234444466666665544
No 31
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=24.59 E-value=3.2e+02 Score=23.15 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=59.1
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccccccCCCcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hH-HHHH
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLRLPVVGKAI-ADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NS-LTAE 567 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~-lvSE 567 (619)
++++...=|.+|..-+...+..|-.. |...... ....++.++|..+++.-+.+...+..+...+++. +. ...-
T Consensus 47 ~f~~~a~ee~~Ha~~l~e~i~~lgg~----p~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~ 122 (149)
T 2qqy_A 47 FFESEISDEQGHALYLAEKIKTLGGT----PTTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVK 122 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----CCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc----cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666788888998888888777542 1111011 1123677888888888888888888888777642 22 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007071 568 LMSVTAKEMALLEQCKDFSST 588 (619)
Q Consensus 568 La~Va~qE~~lLeEC~eLL~~ 588 (619)
|-.++..|...+..-+.+|..
T Consensus 123 l~~~~~eee~h~~~l~~~l~~ 143 (149)
T 2qqy_A 123 LEDMIADETNHMEELDRLLND 143 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345666777777766666543
No 32
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Probab=24.30 E-value=4.2e+02 Score=25.06 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=66.8
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHH--H
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKAI-ADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELMS--V 571 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa~--V 571 (619)
+.=|.+|+.-|-.-+..+..... |+-..... .|..++.++|..|+++=..+...|..+.--+++ -+...+++-+ .
T Consensus 56 s~EE~~HA~kl~~yi~~rgG~~~-l~~i~~p~~~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~f 134 (191)
T 3kxu_A 56 AEEKREGYERLLKMQNQRGGRAL-FQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHF 134 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-CCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc-cCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55567788777777766665432 33222233 346678899999999988888888888877765 4566666553 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 007071 572 TAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 572 a~qE~~lLeEC~eLL~~~a~Lq 593 (619)
..+|...+.+..++|..+..+-
T Consensus 135 L~EQve~i~~l~~~l~~l~~~g 156 (191)
T 3kxu_A 135 LDEEVKLIKKMGDHLTNLHRLG 156 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6777777777888877776653
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.88 E-value=1.9e+02 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007071 440 FMVQQLNAEKNIWNAWVTISELRNSVTLKRIKLLLVKKKLKL 481 (619)
Q Consensus 440 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 481 (619)
+......-|-+|.+.-..|.+|.+-|++...++.+++..+++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556678889999999999999999999999999887764
No 34
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=22.95 E-value=4e+02 Score=23.64 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=68.4
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHH-HHHHHHHHH
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENM-NSL-TAELMSVTA 573 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~l-vSELa~Va~ 573 (619)
+.=|.+|+.-|..-+..|-....--++. ..-...++.+.+..+++.=..+...+..+.--+++. +.. ..=|-.++.
T Consensus 48 a~eE~~HA~~l~~~i~~lGG~p~~~~~~--~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~ 125 (159)
T 4am5_A 48 SIEEMAHADKFVERILFLEGLPNLQTLD--PLRIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMG 125 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCSBCC--CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4457778888877777776543211111 112234678888888888888888888888777663 222 233456777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 007071 574 KEMALLEQCKDFSSTLSALQIKDCSLRTHI 603 (619)
Q Consensus 574 qE~~lLeEC~eLL~~~a~LqVeE~SLR~~l 603 (619)
.|..-++....+|..+..+=++. -|..|+
T Consensus 126 eEeeH~~~l~~~L~~i~~~G~~~-yl~~q~ 154 (159)
T 4am5_A 126 DEEHHIDFLETQLDLVSKLGLEL-YAQHHI 154 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHH-HHHHHc
Confidence 78888888888888888776543 354443
No 35
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=22.57 E-value=47 Score=36.60 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhH----HhhcccChhh---------------H---------HhhhhhhhhhHHHHHHH
Q 007071 461 LRNSVTLKRIKLLLVKKKLKLTSI----LKGQFPYLEE---------------W---------ALLDKDHTNSLLGATEA 512 (619)
Q Consensus 461 LR~sVa~KRieLq~lkq~~KL~~I----L~~Qm~~LEe---------------W---------~~LE~ehsssLs~a~ea 512 (619)
||||.+|.+--|.++++.-+|..+ ++-|..|... | ...|++| -|+.+.--
T Consensus 108 LRDS~~Q~~pYl~l~~~d~~l~~li~G~i~rq~~~i~~dPYaNAF~~~~~~~~~~~d~t~~~P~v~E~Ky--ElDSla~~ 185 (489)
T 2p0v_A 108 LRDSGAQVWPYVQLANKDPELKKMLAGVINRQFKCINIDPYANAFNMNSEGGEWMSDLTDMKPELHERKW--EIDSLCYP 185 (489)
T ss_dssp HHHHHHHSGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHCTTCSEECSSSCCCGGGGSSSCCCTTEEECCC--CHHHHHHH
T ss_pred hcccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccCccccccCCCCCCCCCCCCCCCCCcccccccc--hhhhhHHH
Confidence 699999999888888776665544 4777776654 3 1345555 33344434
Q ss_pred HHhcccccccCCCcccchHHHHHHHHHHHHHHHH
Q 007071 513 LKASTLRLPVVGKAIADVQNLKDAISSALDVMQA 546 (619)
Q Consensus 513 L~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~ 546 (619)
|.++-...=.++....--+....||..++++|.+
T Consensus 186 L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~ 219 (489)
T 2p0v_A 186 IRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKE 219 (489)
T ss_dssp HHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHH
Confidence 4444333334455544444677888888888866
No 36
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=22.36 E-value=4e+02 Score=25.49 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=36.7
Q ss_pred ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007071 517 TLRLPVVGKAIADVQNLKDAISSALDVMQAMASSICLLSSKVENMNSLTAELMSVTAKEMALLEQCK 583 (619)
Q Consensus 517 tlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~lvSELa~Va~qE~~lLeEC~ 583 (619)
+.-.|+. +-|+..|...|...+|.++.+..-+..+- ++++...+.+|++++.+--..+.++-
T Consensus 86 ~fitP~d---ReDI~~L~~~lDdI~D~ie~~a~~l~l~~--~~~~~~~~~~l~~~i~~~~~~l~~ai 147 (227)
T 3l39_A 86 TFITPFD---REDIHDLASCMDDVIDGINSSAKRIVIYN--PRPISESGKELSRLIHEEAINIGKAM 147 (227)
T ss_dssp CSCCSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445653 56777777777777777777777666443 33455556666665544433333333
No 37
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=22.31 E-value=4.7e+02 Score=24.25 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=53.3
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHhcccc-------cccCC-C-cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007071 491 YLEEWALLDKDHTNSLLGATEALKASTLR-------LPVVG-K-AIADVQNLKDAISSALDVMQAMASSICLLSSKVENM 561 (619)
Q Consensus 491 ~LEeW~~LE~ehsssLs~a~eaL~AatlR-------LPv~~-G-AkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~ 561 (619)
+|++...=|.+|..-|..-+..|-....- +.-.. . ...+..++.+.|...++..+.+...++.+..-+++.
T Consensus 62 ~f~~~~~ee~~haD~iaERI~~LGg~p~~~~~~~~~~s~I~~e~~~~~~~~~~e~l~~~l~~e~~v~~~~~~~i~~A~e~ 141 (188)
T 2clb_A 62 IAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGK 141 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHCSSCCCCCCTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777888999888888888766542 11112 2 233344677888888888888888888888777665
Q ss_pred hHHHHHHH
Q 007071 562 NSLTAELM 569 (619)
Q Consensus 562 ~~lvSELa 569 (619)
+.....|-
T Consensus 142 D~~T~dlL 149 (188)
T 2clb_A 142 DPRTYDLA 149 (188)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 54444444
No 38
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=21.91 E-value=4.7e+02 Score=24.09 Aligned_cols=97 Identities=12% Similarity=0.238 Sum_probs=69.9
Q ss_pred HhhhhhhhhhHHHHHHHHHhcccccccCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHH--H
Q 007071 496 ALLDKDHTNSLLGATEALKASTLRLPVVGKA-IADVQNLKDAISSALDVMQAMASSICLLSSKVEN-MNSLTAELMS--V 571 (619)
Q Consensus 496 ~~LE~ehsssLs~a~eaL~AatlRLPv~~GA-kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee-~~~lvSELa~--V 571 (619)
+.=|.+|+.-|-.-+..+..... |+-.... +.+..++.++|..|+++=..+...|..+.--+++ -+...+++-+ .
T Consensus 56 s~EE~~HA~kl~~~i~~rgg~~~-l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~f 134 (176)
T 3ka8_A 56 SHEEREHAEKFMKYQNKRGGRVV-LQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEY 134 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-CCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCee-eCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 55577788877777777665433 2222222 4455678999999999999999998888888765 5667777654 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 007071 572 TAKEMALLEQCKDFSSTLSALQ 593 (619)
Q Consensus 572 a~qE~~lLeEC~eLL~~~a~Lq 593 (619)
..+|...+.+..++|..+..+-
T Consensus 135 l~eQve~~~~l~~~l~~l~~~g 156 (176)
T 3ka8_A 135 LEEQVKHIKRIGDFITNLKRLG 156 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7777788888888888777654
No 39
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=21.87 E-value=6.5e+02 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.001 Sum_probs=14.7
Q ss_pred hhhhcchhhHHHHHHhHHHHHHHHHHHHH
Q 007071 420 RLLHNRYLQWRFVNARADATFMVQQLNAE 448 (619)
Q Consensus 420 RLLhNRlLQWRFaNARAeaa~~~q~~~AE 448 (619)
||-...-+|=+|...+..+....+...+|
T Consensus 100 RL~L~~~~~~~~~~l~~aa~~l~eL~~tq 128 (290)
T 3i9w_A 100 RLQLRQQQQQLSQQIVAAADEIARLAQGQ 128 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666555555444444433
No 40
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.65 E-value=3.7e+02 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.4
Q ss_pred ccChhhHHhhhhhhhhhHHHHHHHHHh
Q 007071 489 FPYLEEWALLDKDHTNSLLGATEALKA 515 (619)
Q Consensus 489 m~~LEeW~~LE~ehsssLs~a~eaL~A 515 (619)
+.||.+=+.||.+|+-.|..+......
T Consensus 49 ~~f~keRa~iE~eYak~L~kLakk~~~ 75 (312)
T 3abh_A 49 MNCLHERARIEKAYAQQLTEWARRWRQ 75 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677789999999999988887654
No 41
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.56 E-value=2.1e+02 Score=26.64 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHHHhHHhhcccChhhHHhhhhh
Q 007071 440 FMVQQLNAEKNIWNAWVTISELRNS---------------VTLKRIKLLLVKKKLKLTSILKGQFPYLEEWALLDKD 501 (619)
Q Consensus 440 ~~~q~~~AE~~Ly~~W~~is~LR~s---------------Va~KRieLq~lkq~~KL~~IL~~Qm~~LEeW~~LE~e 501 (619)
...++..||++|..+=..+.+|++. -..--+...-+.-+..|..|-......+..|-+||.=
T Consensus 50 ~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 50 LEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888777654 2223444455556667888888888888899888864
Done!