BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007072
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 162 EDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVL 220
++ ++G+ L+S KFP LQ L+L +ET + + + L+ L L++N
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--- 238
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
+ DA G P + + ++N L F G K P L + ++
Sbjct: 239 -----SLRDA--AGAPSCDWPSQLNSLN-----LSFTGL---KQVPKGLPAK------LS 277
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
LDLS +N +++ SP E+P + +L+++GNP
Sbjct: 278 VLDLS----YNRLDRNPSPDELPQVGNLSLKGNPF 308
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 27/146 (18%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
K +LQ L L N +E + ++ L +L+ L L++N L ++ + CP+L
Sbjct: 345 KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-----LQSQAFKECPQL 399
Query: 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN--RCIHNLVNKA 296
E+ + FT + P S P Q++ L + N C + N+
Sbjct: 400 ELLDLAFT-------------RLHINAPQS------PFQNLHFLQVLNLTYCFLDTSNQH 440
Query: 297 FSPAEMPSLSHLNIRGNPLEQNSVRE 322
A +P L HLN++GN + ++ +
Sbjct: 441 L-LAGLPVLRHLNLKGNHFQDGTITK 465
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 82 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 119
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 82 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 119
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDI--LESEIHNATEKGD----GTVKWLELEDADIGDD 169
T ++E+D H NG S +E + L+ + NA + L D I +
Sbjct: 277 TRVQELDLTAA--HLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 170 MLLSLNLSS----KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
M L+L + K +LQ L L + +E + ++ L++L+ L L+ N L
Sbjct: 335 MR-KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG---- 389
Query: 226 CMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS 285
+ED + CP+LE+ + FT ++ K P S P Q++ L +
Sbjct: 390 -LEDQAFKECPQLELLDVAFT------------HLHVKA-PHS------PFQNLHLLRVL 429
Query: 286 N--RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRE 322
N C+ + N+ A + L HLN++GN + S+ +
Sbjct: 430 NLSHCLLDTSNQHLL-AGLQDLRHLNLQGNSFQDGSISK 467
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++P+L+HLN+ GN L+ S LE LK CL+SL
Sbjct: 93 KLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSL 125
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 28/89 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNNPVLKKCDHCME-----DAILQGCPKL 238
+ N + CD + AI + PKL
Sbjct: 228 DGNSL---CDTFRDQSTYISAIRERFPKL 253
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS--- 178
D + VL G +S+ D++ I + L + + +I + LLSLNLS+
Sbjct: 120 DGSQQVLDLKGLRSD-PDLVAQNIDVVLNRRSCMAATLRIIEENIPE--LLSLNLSNNRL 176
Query: 179 -----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWLNNNPVLKKCDH 225
K P+L+ L+L GN+L++ +E+ K+K L+ LWL+ N + CD
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWLDGNSL---CDT 229
Query: 226 CME-----DAILQGCPKL 238
+ AI + PKL
Sbjct: 230 FRDQSTYISAIRERFPKL 247
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS--- 178
D + VL G +S+ D++ I + L + + +I + LLSLNLS+
Sbjct: 120 DGSQQVLDLKGLRSD-PDLVAQNIDVVLNRRSCMAATLRIIEENIPE--LLSLNLSNNRL 176
Query: 179 -----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWLNNNPVLKKCDH 225
K P+L+ L+L GN+L++ +E+ K+K L+ LWL+ N + CD
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWLDGNSL---CDT 229
Query: 226 CME-----DAILQGCPKL 238
+ AI + PKL
Sbjct: 230 FRDQSTYISAIRERFPKL 247
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 28/89 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNNPVLKKCDHCME-----DAILQGCPKL 238
+ N + CD + AI + PKL
Sbjct: 228 DGNSL---CDTFRDQSTYISAIRERFPKL 253
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 161 LEDADIGDDMLLSL--NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
LE + G + L + + K P L+ L+L N+L++V + +L +L+ +WL+ NP
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI--FDRLTSLQKIWLHTNP 229
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
L+ K P+L+ L+L GNK++ + I + + KL+NL++L L N
Sbjct: 88 LAEKCPNLKHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFN 127
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L S+ LDLS+ + +L + F P + SL +LN+ GNP + V L L L+
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 20/63 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNN 217
+ N
Sbjct: 228 DGN 230
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L S+ LDLS+ + +L + F P + SL +LN+ GNP + V L L L+
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTK 177
Query: 206 LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240
L+N L+L+ N H + L+G L++
Sbjct: 178 LQN---LYLSKN-------HISDLRALRGLKNLDV 202
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADI 166
DA KG H NG SN +D E++ N T+ ++ L E+ I
Sbjct: 162 DATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTI 206
>pdb|3KQ0|A Chain A, Crystal Structure Of Human Alpha1-Acid Glycoprotein
Length = 192
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 496 WFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNT----ESLHRSDGC 539
WF+ ++ EY K Q++Q +TP K+ +T E R D C
Sbjct: 25 WFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLREYQTRQDQC 72
>pdb|3BX6|A Chain A, Crystal Structure Of Human Alpha 1 Acid Glycoprotein
Length = 192
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 496 WFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNT----ESLHRSDGC 539
WF+ ++ EY K Q++Q +TP K+ +T E R D C
Sbjct: 25 WFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLREYQTRQDQC 72
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
L+ K P+L L+L GNK++ + I + + KL+NL++L L N V D+
Sbjct: 83 LAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDY 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,479,233
Number of Sequences: 62578
Number of extensions: 771400
Number of successful extensions: 1920
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1875
Number of HSP's gapped (non-prelim): 78
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)