BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007072
(619 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12
PE=1 SV=1
Length = 639
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
VL MW + TY+LA+ ++ VWY+MDE GS ++HSD P+F APF +MP+
Sbjct: 161 VLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDMPSFATAPFFYMPQ-----Q 215
Query: 458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAW---------FHTPQ---SYFI 505
V++++LWP++++ +E TRDF YG + R L W F TP+ Y+
Sbjct: 216 VAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQ 275
Query: 506 NEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEP 565
E++ +KL L+ +P R G RV+ D+ V LT F T
Sbjct: 276 AILEENKEKL---PLAISPVA--------RPQGHVFRVHCDVQQVLGHLTHPRFTFTDSE 324
Query: 566 KDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKV 615
DADI + + MK + + Q +NQFP E+ L +K LA ++
Sbjct: 325 ADADIFFHFSHFKDYMKLSQE-SPQVLLNQFPCENLLTVKDCLASIARRA 373
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 34/142 (23%)
Query: 12 EDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKI------------------- 52
++FV +HG L ASG+P+ L +L KL E FDAG F I
Sbjct: 24 DEFVSLHGPTLRASGVPERLWGRLLHKLEHEVFDAGEMFGIMQVEEVEEAEDEAAREAQR 83
Query: 53 -------EVCEDGRQRRLVLDSQSMPK---ESNVFLVDHAWTFRLSDAFSQLQEVPGLAQ 102
E+C ++++ S+S + +++FL+DHAWT R+ A QLQ+VPGL
Sbjct: 84 KQPNPGGELC-----YKVIVTSESGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLH 138
Query: 103 RMASLMCVDTDLDTDIEEVDAV 124
RMA+LM ++ + EV A+
Sbjct: 139 RMANLMGIEFHGEVPSPEVVAL 160
>sp|Q14166|TTL12_HUMAN Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12
PE=1 SV=2
Length = 644
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
VL MW + TY+LA+ ++ VWY+MDE GS ++H+D P+F APF +MP+
Sbjct: 166 VLEEMWKFNQTYQLAHGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQ-----Q 220
Query: 458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHT------------PQSYFI 505
V++++LWP++++ +E TRDF YG + R L W T P ++
Sbjct: 221 VAYTLLWPLRDLDTGEEVTRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQ 280
Query: 506 NEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEP 565
E++ +KL L P + G +VYTD+ V LT F +T
Sbjct: 281 AILEENKEKL---PLDINPVVHPH--------GHIFKVYTDVQQVASSLTHPRFTLTQSE 329
Query: 566 KDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKV 615
DADI++ +D + + +NQFP E+ L +K LA ++
Sbjct: 330 ADADILFNFSHF-KDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRA 378
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 36/147 (24%)
Query: 13 DFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKI-------------------- 52
+F +HG L ASG+P+ +L KL E FDAG F I
Sbjct: 30 EFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDEAAREVRKQ 89
Query: 53 ------EVCEDGRQRRLVLDSQS---MPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQR 103
E+C ++++ +S +++FL+DHAWT R+ A QLQ+VPGL R
Sbjct: 90 QPNPGNELC-----YKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGLLHR 144
Query: 104 MASLMCVDTDLDTDIEEVDAVKGVLHE 130
MA+LM + + ++ +AV VL E
Sbjct: 145 MANLMGI--EFHGELPSTEAVALVLEE 169
>sp|Q09512|TTL12_CAEEL Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans
GN=ttll-12 PE=4 SV=1
Length = 662
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 36/250 (14%)
Query: 384 RLPEWSADQP---LADRVLSAMWLYLMTYRLA---NEEKIDETSVWYVMDELGSAVRHSD 437
RL +S D P L ++VL A+W Y TY ++ + +I++ SVWYVMD+ G+ VRHS
Sbjct: 159 RLSSYSVDDPKNELTEKVLKALWKYSQTYSVSYQLDNGEIEKKSVWYVMDDFGTRVRHST 218
Query: 438 EPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF 497
EPN R+ P +F+P+ ++SI++ + V +E D+ + +A+ W
Sbjct: 219 EPNVRIVPLMFLPQN-----CAYSIMFLTKPVNTDEEIMMDWASNVI-----TAQHPEWR 268
Query: 498 -HTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLH---RSDGCASRVYTDIPYVE-- 551
+ Q + ++ K +L Y T N + L C S ++T +P ++
Sbjct: 269 KYIEQPWAAQDFSKETMIPDAPTLEYF-TSGRNPDFLAGPTEQQTCQSAIFTSLPILKKR 327
Query: 552 ------------EFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFE 599
E L + + K AD+IW ++ D K + +NQFPFE
Sbjct: 328 KIKVYADDTQLTEHLKNHKVEYVDDIKKADVIWM-IKHFHDYKQLSEENPCGMINQFPFE 386
Query: 600 SCLVMKHHLA 609
SC+ +K LA
Sbjct: 387 SCITVKDLLA 396
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 11 YEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKI--EVCEDGRQRRLV--LD 66
+ F+ H L AS +P L L++KL+ +TFDAG +F+I E+ ED + V L+
Sbjct: 10 FSTFLDQHSGQLNASDVPPELWHSLYKKLSDQTFDAGDHFQIICEMNEDDEKTLFVRALE 69
Query: 67 SQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEE 120
E N+FL+DH +F A ++ GL +R+A L +DTD +++E
Sbjct: 70 DLHNNDEDNIFLIDHFMSFSSESARKCVESTEGLVERLAGLFGIDTDSTEEVDE 123
>sp|A8XXC0|TTL12_CAEBR Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae
GN=ttll-12 PE=4 SV=2
Length = 672
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)
Query: 350 EILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQP---LADRVLSAMW--- 403
E +E + T C ++ L E + RL +S D P + +RV+ +W
Sbjct: 128 ETVEKIETSCEKEEEEHARRLSEPGLPRHESVDARLSSYSVDDPKKTMTERVMRNLWKFA 187
Query: 404 -LYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSI 462
Y ++Y+L N E +++ VWYVMD+ GS +RHS PN R+ P +F+P+ ++SI
Sbjct: 188 QTYTVSYQLENGE-MEKKHVWYVMDDFGSRIRHSGCPNVRIVPLMFLPQN-----CAYSI 241
Query: 463 LWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQS-----------------YFI 505
++ + V DE T D+ + K R + P + YF
Sbjct: 242 MFLTKPVKIDDEITMDWAANVITAKNPEWR--QYLEMPWAEKDFSSESMVPGPPTLEYFT 299
Query: 506 N----------EYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLT 555
+ + +K C+ F +LS + L +++ D + E L
Sbjct: 300 SGRNPDFLADEKDKKTCESAIFSALSVLKKQGKIKIFL--------QIFADDTQLTEHLK 351
Query: 556 RTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLA 609
+ + K AD+IW ++ D +NQFPFESC+ +K LA
Sbjct: 352 SRQIEYVDDWKAADVIWM-IKHFHDYSNLAQENPCAQINQFPFESCITVKDLLA 404
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 3 SNSNRI-ETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCE----D 57
S+S+R+ + F+ H L AS +P L L++KL+ +TFDAG +F+I +CE D
Sbjct: 4 SSSDRLGYPFSTFLDQHSAQLNASAVPPELWHSLYRKLSDQTFDAGDHFQI-ICEMDEND 62
Query: 58 GRQRRLVLDSQSMPK--ESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCV 110
++ V + M E N+FL+DH +F A ++ L +R+A+L +
Sbjct: 63 EKKTLFVRALEDMHNNDEENIFLIDHFISFPAESARKCVESNEKLPERLAALFGI 117
>sp|Q99257|MEX67_YEAST mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MEX67 PE=1 SV=1
Length = 599
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 142 ESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN----LSSKFPDLQALSLCGNKLETVE 197
+S++ A K T K L +E ++ D+ L ++ L+ FP+L+ L L N++
Sbjct: 145 QSKMFPAMMKLASTEKSLIVESVNLADNQLKDISAISTLAQTFPNLKNLCLANNQIFRFR 204
Query: 198 IIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240
+ K K+LR L + NNP+ D +L+ PKL +
Sbjct: 205 SLEVWKNKFKDLRELLMTNNPI--TTDKLYRTEMLRLFPKLVV 245
>sp|Q505F5|LRC47_MOUSE Leucine-rich repeat-containing protein 47 OS=Mus musculus GN=Lrrc47
PE=1 SV=1
Length = 581
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 180 FPDLQALSLCGNKLETVE----IIVQEVTKLKNLRALWLNNNPV------LKKCDHCMED 229
P L+ L L GN LET+ + E L L++L L+ N + L +C ++
Sbjct: 100 LPALRVLDLSGNALETLPPGEGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQS 159
Query: 230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-RP----LQSVTSLDL 284
L G +L+ + F AL E+ DN CLR+ P L S+ +LDL
Sbjct: 160 LNLTGN-RLDAFPPEL---FRPGALPLLSELAAADN----CLRELSPDIAHLASLKTLDL 211
Query: 285 SNRCIHNLVNKAFSPAEM---PSLSHLNIRGNPLEQNSVRELL 324
SN + + PAE+ P L +N RGN L + +++
Sbjct: 212 SNNQLTEI------PAELADCPKLKEINFRGNRLRDKRLEKMV 248
>sp|Q8K1S1|LGI4_MOUSE Leucine-rich repeat LGI family member 4 OS=Mus musculus GN=Lgi4
PE=1 SV=1
Length = 537
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
R L+S+T L L+N + L F E +L+H+++RGNP + + +L +L+ P +
Sbjct: 121 RGLRSLTHLSLANNHLEALPRFLFRGLE--TLTHVDLRGNPFQCDC--RVLWLLQWMPTV 176
Query: 334 Q-SLGVD-IPGPLGESAIEI--LESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWS 389
S+G GP + I++ L+ C ++ + + E ++S P
Sbjct: 177 NASVGTGACAGPPAVAQIQLNHLDPKKFKCRATELSWLQTVGESALSVESFSYQGEPHMV 236
Query: 390 ADQPLADRVLSAMWLYLMTYRLANEEKIDETSV 422
QP A R L +W Y + R EE++ SV
Sbjct: 237 LAQPFAGRCLILVWDYSLQ-RFRPEEELSAPSV 268
>sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3
Length = 618
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 28/89 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLSS K P+L+ L+L GN+L+T +E+ K+K L+ LWL
Sbjct: 266 LLSLNLSSNRLYKLDDMSSIVQKAPNLKTLNLSGNELKT----ERELDKIKGLKLEELWL 321
Query: 215 NNNPVLKKCDHCME-----DAILQGCPKL 238
+ NP+ CD+ + AI + PKL
Sbjct: 322 DRNPM---CDNFGDQSSYISAIRERFPKL 347
>sp|P84149|MEX67_CANAL mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=MEX67 PE=1 SV=2
Length = 617
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 159 LELEDADIGDDMLLSL----NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
L+++ D+ ++ L L +++ FP LQ LSL N +++ KL LR L L
Sbjct: 184 LDVDSIDLSNNELQDLQTLTSMAQTFPKLQNLSLQNNNFTKIKVFETWRHKLNFLRELIL 243
Query: 215 NNNPVLKKCD----HCMEDAILQGCPKLEI 240
NNP+++ D ++ +++ P+L +
Sbjct: 244 FNNPIVQTNDPAEIQTIKLELMKSFPRLVV 273
>sp|Q8N1G4|LRC47_HUMAN Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47
PE=1 SV=1
Length = 583
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 34/164 (20%)
Query: 180 FPDLQALSLCGNKLETVE----IIVQEVTKLKNLRALWLNNNPV------LKKCDHCMED 229
P L+ L L GN LE + + E L L++L L+ N + L +C ++
Sbjct: 98 LPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQS 157
Query: 230 AILQG-CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-RP----LQSVTSLD 283
L G C L+ + + F AL E+ DN CLR+ P L S+ +LD
Sbjct: 158 LNLTGNC--LDSFPAEL---FRPGALPLLSELAAADN----CLRELSPDIAHLASLKTLD 208
Query: 284 LSNRCIHNLVNKAFSPAEM---PSLSHLNIRGNPLEQNSVRELL 324
LSN + + PAE+ P L +N RGN L + +++
Sbjct: 209 LSNNQLSEI------PAELADCPKLKEINFRGNKLRDKRLEKMV 246
>sp|Q9ZJH3|ISPE_HELPJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Helicobacter
pylori (strain J99) GN=ispE PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTA 366
PLE+NS+ + L+VLK F ++ + L AIE+ +++PT L G +A
Sbjct: 59 PLEENSLFKALQVLKKFLVQKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSA 111
>sp|O60806|TBX19_HUMAN T-box transcription factor TBX19 OS=Homo sapiens GN=TBX19 PE=1 SV=3
Length = 448
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 10/69 (14%)
Query: 131 NGTKSNVEDILESEIHNATEKGDGTVKWLE--LEDA-------DIGDDMLLSLNLSSKFP 181
+GT S++ +++ESE+ EKGD T K L+ LEDA ++ ++M+++ N FP
Sbjct: 13 DGTVSHLLNVVESELQAGREKGDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRMFP 72
Query: 182 DLQALSLCG 190
L+ +S+ G
Sbjct: 73 VLK-ISVTG 80
>sp|Q9EST5|AN32B_MOUSE Acidic leucine-rich nuclear phosphoprotein 32 family member B
OS=Mus musculus GN=Anp32b PE=1 SV=1
Length = 272
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
E+PSL+HLN+ GN L+ S LE LK CL+SL
Sbjct: 86 ELPSLTHLNLSGNNLKDIST---LEPLKRLDCLKSL 118
>sp|Q9EST6|AN32B_RAT Acidic leucine-rich nuclear phosphoprotein 32 family member B
OS=Rattus norvegicus GN=Anp32b PE=2 SV=1
Length = 272
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
E+PSL+HLN+ GN L+ S LE LK CL+SL
Sbjct: 86 ELPSLTHLNLSGNNLKDIST---LEPLKRLDCLKSL 118
>sp|Q5XNS0|TBX19_CANFA T-box transcription factor TBX19 OS=Canis familiaris GN=TBX19 PE=2
SV=1
Length = 445
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 131 NGTKSNVEDILESEIHNATEKGDGTVKWLE--LEDA-------DIGDDMLLSLNLSSKFP 181
+GT S + +++ESE+ EKGD T K L+ LEDA ++ ++M+++ N FP
Sbjct: 13 DGTVSRLLNVVESELQAGREKGDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRMFP 72
Query: 182 DLQALSLCG 190
L+ +S+ G
Sbjct: 73 VLK-ISVSG 80
>sp|Q99ME7|TBX19_MOUSE T-box transcription factor TBX19 OS=Mus musculus GN=Tbx19 PE=2 SV=1
Length = 446
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 132 GTKSNVEDILESEIHNATEKGDGTVKWLE--LEDA-------DIGDDMLLSLNLSSKFPD 182
GT S + +++ESE+ EKGD T K L+ LEDA ++ ++M+++ N FP
Sbjct: 12 GTVSRLLNVVESELQAGREKGDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRMFPV 71
Query: 183 LQALSLCG 190
L+ +S+ G
Sbjct: 72 LK-ISVTG 78
>sp|A5UEP8|PYRD_HAEIG Dihydroorotate dehydrogenase (quinone) OS=Haemophilus influenzae
(strain PittGG) GN=pyrD PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA 348
L + GNPL Q ++ L+ KGFP +GV+ P P+G +A
Sbjct: 25 LKLAGNPLFQPILKSLIHAPKGFPK-TVMGVNFPNPIGLAA 64
>sp|P45477|PYRD_HAEIN Dihydroorotate dehydrogenase (quinone) OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pyrD PE=3
SV=1
Length = 339
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA 348
L + GNPL Q ++ L+ KGFP +GV+ P P+G +A
Sbjct: 25 LKLAGNPLFQPILKSLIHAPKGFPK-TVMGVNFPNPIGLAA 64
>sp|Q9BXB1|LGR4_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo
sapiens GN=LGR4 PE=2 SV=2
Length = 951
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
S P LQAL+L NK+ ++ T L +L L L+NN + HC + G
Sbjct: 174 SNLPTLQALTLALNKISSIPDFA--FTNLSSLVVLHLHNNKIRSLSQHCFD-----GLDN 226
Query: 238 LEIYNSNFTINFGEW 252
LE + N+ N GE+
Sbjct: 227 LETLDLNYN-NLGEF 240
>sp|Q6NZL6|TONSL_MOUSE Tonsoku-like protein OS=Mus musculus GN=Tonsl PE=2 SV=2
Length = 1363
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 43/218 (19%)
Query: 155 TVKWLELEDADIGD----DMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVT---K 205
++ L L +GD ++L +L + P+L L L N L E + +V+ +
Sbjct: 1060 ALRELRLAGNRLGDACATELLATLGTT---PNLVLLDLSSNHLGQEGLRQLVEGSSGQAA 1116
Query: 206 LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI-------YNSNFTINFGEWALGFCG 258
L+NL L L+ NP+ C + ++L+ CP L ++S+F ++ + ALG G
Sbjct: 1117 LQNLEELDLSMNPLGDGCGQALA-SLLRACPMLSTLRLQACGFSSSFFLSH-QAALG--G 1172
Query: 259 EVYDKDNPSSL--------------CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA---- 300
D + +L L+ P ++ LDLS+ + P
Sbjct: 1173 AFQDAVHLKTLSLSYNLLGAPALARVLQTLPACTLKRLDLSSVAASKSNSGIIEPVIKYL 1232
Query: 301 --EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
E +L+HL + N L +VREL L P L SL
Sbjct: 1233 TKEGCALAHLTLSANCLGDKAVRELSRCLPCCPSLTSL 1270
>sp|Q17Z99|ISPE_HELAH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Helicobacter
acinonychis (strain Sheeba) GN=ispE PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 310 IRGN---PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNG 363
++GN PLE+NS+ + L++LK F + L + L AIE+ +++PT L G
Sbjct: 52 LKGNFDCPLEENSLFKALQILKNFLKSKKLSHSVIKSLDTLAIEVEKNIPTQAGLGG 108
>sp|Q9NR96|TLR9_HUMAN Toll-like receptor 9 OS=Homo sapiens GN=TLR9 PE=1 SV=2
Length = 1032
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313
P +VTSL LS+ IH+L + F A +PSL HLN++ N
Sbjct: 61 PRGNVTSLSLSSNRIHHLHDSDF--AHLPSLRHLNLKWN 97
>sp|P10810|CD14_MOUSE Monocyte differentiation antigen CD14 OS=Mus musculus GN=Cd14 PE=1
SV=1
Length = 366
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 162 EDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVL 220
++ ++G+ L+S KFP LQ L+L +ET + + + L+ L L++N
Sbjct: 199 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--- 255
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
+ DA G P + + ++N L F G K P L + ++
Sbjct: 256 -----SLRDA--AGAPSCDWPSQLNSLN-----LSFTGL---KQVPKGLPAK------LS 294
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
LDLS +N +++ SP E+P + +L+++GNP
Sbjct: 295 VLDLS----YNRLDRNPSPDELPQVGNLSLKGNPF 325
>sp|Q8N135|LGI4_HUMAN Leucine-rich repeat LGI family member 4 OS=Homo sapiens GN=LGI4
PE=2 SV=1
Length = 537
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
R L+S+T L L+N + L F + +L+H+++RGNP + + +L +L+ P +
Sbjct: 121 RGLRSLTHLSLANNHLETLPRFLFR--GLDTLTHVDLRGNPFQCDC--RVLWLLQWMPTV 176
Query: 334 Q-SLGVDI---PGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWS 389
S+G P L + L+ C ++ + + E ++ P
Sbjct: 177 NASVGTGACAGPASLSHMQLHHLDPKTFKCRAIELSWFQTVGESALSVEPFSYQGEPHIV 236
Query: 390 ADQPLADRVLSAMWLYLMTYRLANEEKIDETSV 422
QP A R L W Y + R EE++ SV
Sbjct: 237 LAQPFAGRCLILSWDYSLQ-RFRPEEELPAASV 268
>sp|A5UC11|PYRD_HAEIE Dihydroorotate dehydrogenase (quinone) OS=Haemophilus influenzae
(strain PittEE) GN=pyrD PE=3 SV=1
Length = 339
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA 348
L + GNPL + ++ ++ KGFP + +GV+ P P+G +A
Sbjct: 25 LKLAGNPLFKPILKSIIHAPKGFPKM-VMGVNFPNPIGLAA 64
>sp|Q9NT99|LRC4B_HUMAN Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B
PE=2 SV=3
Length = 713
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 133 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 170
>sp|Q96HA7|TONSL_HUMAN Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1 SV=2
Length = 1378
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 284 LSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL-GVDIP- 341
L ++C+ LV + MPSL+ L++ N L +R+L L G LQSL +D+
Sbjct: 1082 LGDKCVAELVAALGT---MPSLALLDLSSNHLGPEGLRQLAMGLPGQATLQSLEELDLSM 1138
Query: 342 GPLGESAIEILESLPTLCTL 361
PLG+ + L SL C L
Sbjct: 1139 NPLGDGCGQSLASLLHACPL 1158
>sp|P0C192|LRC4B_MOUSE Leucine-rich repeat-containing protein 4B OS=Mus musculus GN=Lrrc4b
PE=1 SV=1
Length = 709
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 135 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 172
>sp|Q1CRI6|ISPE_HELPH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Helicobacter
pylori (strain HPAG1) GN=ispE PE=3 SV=1
Length = 274
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVT--ASKILE 371
PLE+NS+ + L++LK F ++ L AIE+ +++PT L G + A +L
Sbjct: 59 PLEENSLFKALQILKNFLKSKNFSHSAIKSLDTLAIEVEKNIPTQAGLGGGSADAGGLLY 118
Query: 372 EGKHVID 378
H+ D
Sbjct: 119 HLNHIFD 125
>sp|P0CC10|LRC4B_RAT Leucine-rich repeat-containing protein 4B OS=Rattus norvegicus
GN=Lrrc4b PE=1 SV=1
Length = 709
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 135 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 172
>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40
PE=2 SV=2
Length = 602
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 165 DIGDDMLLSLNLSSK-FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
DI D+ L SL + + +LQ L++ NKL+ I+ +E+T LKNLR L L +N
Sbjct: 111 DIHDNQLTSLPSAIRELDNLQKLNVSHNKLK---ILPEEITSLKNLRTLHLQHN 161
>sp|O88984|NXF1_RAT Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1
Length = 618
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 24/87 (27%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
LLSLNLS+ K P+L+ L+L GN+L++ E + ++ LK L LWL+
Sbjct: 266 LLSLNLSNNRLYKLDDMSSIVQKAPNLKILNLSGNELKS-EWELDKIKGLK-LEELWLDR 323
Query: 217 NPVLKKCDHCMEDA-----ILQGCPKL 238
NP+ CD ++ + I + PKL
Sbjct: 324 NPM---CDTFLDQSTYISTIRERFPKL 347
>sp|Q92688|AN32B_HUMAN Acidic leucine-rich nuclear phosphoprotein 32 family member B
OS=Homo sapiens GN=ANP32B PE=1 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338
++P+L+HLN+ GN L+ S LE LK CL+SL +
Sbjct: 86 KLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDL 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,434,241
Number of Sequences: 539616
Number of extensions: 9871088
Number of successful extensions: 24682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 24606
Number of HSP's gapped (non-prelim): 136
length of query: 619
length of database: 191,569,459
effective HSP length: 124
effective length of query: 495
effective length of database: 124,657,075
effective search space: 61705252125
effective search space used: 61705252125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)