Query 007072
Match_columns 619
No_of_seqs 186 out of 188
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2155 Tubulin-tyrosine ligas 100.0 6.8E-94 1.5E-98 750.0 18.5 379 5-619 1-383 (631)
2 KOG0444 Cytoskeletal regulator 99.9 5.8E-24 1.2E-28 232.8 -0.1 234 13-342 35-302 (1255)
3 PF14580 LRR_9: Leucine-rich r 99.3 6.5E-13 1.4E-17 129.6 1.0 88 277-369 64-153 (175)
4 KOG4194 Membrane glycoprotein 99.3 8.6E-13 1.9E-17 145.5 1.4 164 145-339 281-447 (873)
5 KOG4194 Membrane glycoprotein 99.2 6E-12 1.3E-16 138.9 4.4 203 143-362 162-371 (873)
6 KOG3207 Beta-tubulin folding c 99.2 5.5E-12 1.2E-16 135.6 3.1 89 151-246 118-207 (505)
7 KOG0617 Ras suppressor protein 99.1 3.9E-12 8.5E-17 123.0 -1.4 153 153-342 32-184 (264)
8 KOG2982 Uncharacterized conser 99.1 3.3E-11 7.2E-16 124.7 3.6 198 158-367 49-290 (418)
9 PF14580 LRR_9: Leucine-rich r 99.1 8.1E-11 1.8E-15 114.9 4.9 129 154-338 19-147 (175)
10 PLN00113 leucine-rich repeat r 99.0 5.7E-10 1.2E-14 133.3 10.0 185 154-361 69-265 (968)
11 PLN00113 leucine-rich repeat r 99.0 5.7E-10 1.2E-14 133.3 8.8 187 153-361 92-289 (968)
12 KOG1259 Nischarin, modulator o 98.9 3.6E-10 7.8E-15 117.2 2.6 144 179-357 282-427 (490)
13 cd00116 LRR_RI Leucine-rich re 98.7 7.5E-09 1.6E-13 106.9 5.1 39 303-341 250-288 (319)
14 KOG4237 Extracellular matrix p 98.7 2.7E-09 5.9E-14 114.1 0.5 62 157-223 70-132 (498)
15 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-08 3.7E-13 104.2 6.0 66 277-342 193-261 (319)
16 KOG3207 Beta-tubulin folding c 98.7 7.4E-09 1.6E-13 111.9 3.2 227 154-408 146-390 (505)
17 KOG4237 Extracellular matrix p 98.7 7.3E-09 1.6E-13 110.9 2.6 63 274-342 271-333 (498)
18 KOG0444 Cytoskeletal regulator 98.6 4.5E-09 9.7E-14 117.2 -1.9 155 152-342 30-184 (1255)
19 PRK15387 E3 ubiquitin-protein 98.6 7.2E-08 1.6E-12 113.0 6.6 55 278-343 403-457 (788)
20 KOG0617 Ras suppressor protein 98.6 7E-09 1.5E-13 100.8 -1.6 131 179-344 31-163 (264)
21 PRK15387 E3 ubiquitin-protein 98.4 3.2E-07 6.8E-12 107.7 7.4 145 155-319 223-378 (788)
22 KOG0472 Leucine-rich repeat pr 98.4 3.5E-08 7.6E-13 105.9 -0.8 151 156-343 390-540 (565)
23 KOG0618 Serine/threonine phosp 98.4 5E-08 1.1E-12 113.1 0.3 77 255-341 364-440 (1081)
24 PLN03210 Resistant to P. syrin 98.4 6.3E-07 1.4E-11 110.0 9.7 20 415-434 960-979 (1153)
25 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 98.8 1.2 130 154-319 284-415 (490)
26 PRK15370 E3 ubiquitin-protein 98.3 2.9E-07 6.2E-12 108.0 4.4 158 154-343 262-427 (754)
27 PF13855 LRR_8: Leucine rich r 98.3 2E-07 4.3E-12 74.8 2.0 60 155-219 2-61 (61)
28 PRK15370 E3 ubiquitin-protein 98.3 6.2E-07 1.3E-11 105.2 6.8 59 154-223 241-299 (754)
29 KOG0618 Serine/threonine phosp 98.3 2.7E-07 5.8E-12 107.2 2.1 156 150-341 355-510 (1081)
30 PF13855 LRR_8: Leucine rich r 98.3 2.4E-07 5.1E-12 74.4 0.8 60 277-342 1-60 (61)
31 PLN03210 Resistant to P. syrin 98.3 2.6E-06 5.7E-11 104.6 9.8 79 154-245 611-690 (1153)
32 KOG1859 Leucine-rich repeat pr 98.0 6.1E-07 1.3E-11 102.1 -2.2 83 278-367 233-322 (1096)
33 COG4886 Leucine-rich repeat (L 98.0 6.5E-06 1.4E-10 88.8 5.0 150 154-342 116-266 (394)
34 KOG2123 Uncharacterized conser 97.9 2.6E-06 5.7E-11 88.3 1.0 108 179-367 17-128 (388)
35 KOG0472 Leucine-rich repeat pr 97.9 1.1E-06 2.4E-11 94.7 -2.4 145 158-341 141-285 (565)
36 PLN03150 hypothetical protein; 97.8 3.2E-05 7E-10 89.4 6.8 106 182-342 419-526 (623)
37 COG4886 Leucine-rich repeat (L 97.8 2.1E-05 4.6E-10 84.8 4.6 147 155-342 141-288 (394)
38 KOG0531 Protein phosphatase 1, 97.8 1.1E-05 2.4E-10 88.5 2.3 61 156-223 74-134 (414)
39 PLN03150 hypothetical protein; 97.7 4.4E-05 9.5E-10 88.3 6.3 106 155-314 419-526 (623)
40 KOG4579 Leucine-rich repeat (L 97.6 1.9E-05 4E-10 74.8 1.5 107 182-342 28-134 (177)
41 KOG0531 Protein phosphatase 1, 97.6 2.3E-05 4.9E-10 86.0 2.3 109 153-319 94-202 (414)
42 PF12799 LRR_4: Leucine Rich r 97.6 6E-05 1.3E-09 57.4 3.0 40 181-223 1-40 (44)
43 KOG2120 SCF ubiquitin ligase, 97.5 1.1E-05 2.3E-10 84.6 -1.8 161 154-339 185-346 (419)
44 KOG1859 Leucine-rich repeat pr 97.5 9.6E-06 2.1E-10 92.7 -2.9 111 179-319 185-295 (1096)
45 PF12799 LRR_4: Leucine Rich r 97.5 5.5E-05 1.2E-09 57.6 1.7 39 278-319 2-40 (44)
46 KOG4658 Apoptotic ATPase [Sign 97.4 0.00011 2.4E-09 88.0 4.5 149 155-363 524-675 (889)
47 KOG4579 Leucine-rich repeat (L 97.3 6E-05 1.3E-09 71.5 -0.0 40 181-222 53-92 (177)
48 KOG1644 U2-associated snRNP A' 97.3 0.00012 2.6E-09 73.2 1.8 87 276-367 63-151 (233)
49 KOG2123 Uncharacterized conser 97.2 8.2E-05 1.8E-09 77.5 0.5 85 153-243 40-124 (388)
50 KOG1909 Ran GTPase-activating 97.2 0.00036 7.9E-09 74.5 4.6 201 152-366 28-251 (382)
51 KOG2739 Leucine-rich acidic nu 97.2 0.00022 4.7E-09 73.5 2.7 65 301-368 89-155 (260)
52 KOG3665 ZYG-1-like serine/thre 97.1 0.00041 8.9E-09 81.2 4.1 156 181-362 122-281 (699)
53 KOG3665 ZYG-1-like serine/thre 97.1 0.00066 1.4E-08 79.5 5.8 186 154-375 122-313 (699)
54 KOG0532 Leucine-rich repeat (L 96.9 6.2E-05 1.3E-09 84.4 -4.7 174 144-343 66-246 (722)
55 KOG1644 U2-associated snRNP A' 96.8 0.00057 1.2E-08 68.4 1.8 87 152-244 62-148 (233)
56 KOG2982 Uncharacterized conser 96.7 0.0014 3E-08 69.1 3.7 61 183-246 47-107 (418)
57 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 68.5 2.4 88 151-244 62-151 (260)
58 KOG0532 Leucine-rich repeat (L 96.6 0.00056 1.2E-08 77.0 0.1 130 154-319 121-250 (722)
59 KOG1909 Ran GTPase-activating 96.5 0.0033 7.2E-08 67.4 5.2 176 179-367 28-224 (382)
60 KOG2120 SCF ubiquitin ligase, 96.5 0.0011 2.4E-08 69.8 1.6 159 181-361 185-343 (419)
61 PRK15386 type III secretion pr 96.0 0.01 2.2E-07 65.6 5.8 52 154-218 52-105 (426)
62 KOG4658 Apoptotic ATPase [Sign 95.8 0.0047 1E-07 74.3 2.3 83 155-249 546-631 (889)
63 KOG1947 Leucine rich repeat pr 95.5 0.015 3.3E-07 63.3 5.0 81 172-253 179-260 (482)
64 KOG3763 mRNA export factor TAP 95.3 0.015 3.2E-07 65.7 4.0 40 178-217 215-254 (585)
65 PF13306 LRR_5: Leucine rich r 95.2 0.022 4.9E-07 51.1 4.3 125 173-333 4-128 (129)
66 COG5238 RNA1 Ran GTPase-activa 95.1 0.043 9.2E-07 57.6 6.3 84 278-363 158-249 (388)
67 smart00317 SET SET (Su(var)3-9 95.0 0.025 5.4E-07 49.5 3.7 45 428-479 72-116 (116)
68 PF13306 LRR_5: Leucine rich r 94.5 0.023 5E-07 51.0 2.4 105 202-339 7-111 (129)
69 KOG1947 Leucine rich repeat pr 94.5 0.024 5.3E-07 61.6 2.9 165 153-333 213-389 (482)
70 KOG3763 mRNA export factor TAP 93.5 0.046 9.9E-07 61.8 2.7 88 150-242 214-307 (585)
71 PRK15386 type III secretion pr 93.3 0.089 1.9E-06 58.4 4.4 34 179-219 50-84 (426)
72 PF00560 LRR_1: Leucine Rich R 91.7 0.067 1.4E-06 34.7 0.6 18 278-295 1-18 (22)
73 KOG4341 F-box protein containi 91.5 0.049 1.1E-06 59.9 -0.4 87 154-246 138-226 (483)
74 smart00369 LRR_TYP Leucine-ric 90.4 0.13 2.8E-06 34.3 1.0 23 276-298 1-23 (26)
75 smart00370 LRR Leucine-rich re 90.4 0.13 2.8E-06 34.3 1.0 23 276-298 1-23 (26)
76 KOG3864 Uncharacterized conser 90.1 0.14 3E-06 51.7 1.3 83 232-359 121-207 (221)
77 KOG2155 Tubulin-tyrosine ligas 88.8 0.45 9.8E-06 52.6 4.1 51 61-111 81-147 (631)
78 KOG4341 F-box protein containi 88.6 0.23 5.1E-06 54.8 1.9 183 155-362 165-352 (483)
79 PF13504 LRR_7: Leucine rich r 88.0 0.18 4E-06 30.8 0.4 16 278-293 2-17 (17)
80 KOG4308 LRR-containing protein 86.9 0.078 1.7E-06 59.9 -3.1 63 279-343 235-302 (478)
81 COG5238 RNA1 Ran GTPase-activa 85.7 1 2.2E-05 47.7 4.4 171 153-365 29-223 (388)
82 PF13504 LRR_7: Leucine rich r 85.7 0.42 9.1E-06 29.2 1.0 15 182-196 2-16 (17)
83 KOG1083 Putative transcription 82.6 0.91 2E-05 54.8 2.9 41 433-480 1254-1294(1306)
84 KOG4308 LRR-containing protein 80.0 0.25 5.4E-06 55.9 -2.7 178 156-343 89-274 (478)
85 PF00856 SET: SET domain; Int 78.2 2.1 4.6E-05 38.8 3.2 51 422-479 111-161 (162)
86 smart00370 LRR Leucine-rich re 75.3 1.9 4.1E-05 28.6 1.5 17 181-197 2-18 (26)
87 smart00369 LRR_TYP Leucine-ric 75.3 1.9 4.1E-05 28.6 1.5 17 181-197 2-18 (26)
88 KOG1082 Histone H3 (Lys9) meth 73.7 2.7 5.9E-05 45.9 3.2 54 426-482 269-322 (364)
89 KOG0473 Leucine-rich repeat pr 72.5 0.42 9.2E-06 49.4 -3.2 84 179-315 40-123 (326)
90 KOG3864 Uncharacterized conser 70.8 2.4 5.1E-05 43.1 1.7 83 154-244 101-184 (221)
91 KOG1080 Histone H3 (Lys4) meth 67.9 4.9 0.00011 49.3 3.8 50 428-486 938-989 (1005)
92 smart00365 LRR_SD22 Leucine-ri 67.7 3.6 7.7E-05 28.2 1.5 17 207-223 2-18 (26)
93 TIGR00864 PCC polycystin catio 65.0 4.4 9.5E-05 54.1 2.8 59 283-343 1-64 (2740)
94 smart00365 LRR_SD22 Leucine-ri 63.0 4.7 0.0001 27.6 1.4 18 180-197 1-18 (26)
95 PF13516 LRR_6: Leucine Rich r 62.7 5.5 0.00012 25.9 1.7 15 181-195 2-16 (24)
96 KOG1085 Predicted methyltransf 59.9 8.1 0.00018 41.0 3.1 56 429-497 333-390 (392)
97 PF00919 UPF0004: Uncharacteri 59.1 7.2 0.00016 34.8 2.3 32 545-576 14-45 (98)
98 COG2940 Proteins containing SE 57.3 6.7 0.00015 44.4 2.3 49 427-482 403-451 (480)
99 smart00364 LRR_BAC Leucine-ric 52.0 7.6 0.00016 26.7 1.0 18 277-294 2-19 (26)
100 smart00368 LRR_RI Leucine rich 49.3 13 0.00028 25.4 1.8 17 303-319 2-18 (28)
101 TIGR00864 PCC polycystin catio 40.6 16 0.00034 49.2 2.1 35 187-223 1-35 (2740)
102 KOG2157 Predicted tubulin-tyro 38.5 35 0.00076 39.1 4.1 71 546-617 84-155 (497)
103 smart00367 LRR_CC Leucine-rich 30.9 31 0.00067 22.9 1.4 17 180-196 1-18 (26)
104 KOG2589 Histone tail methylase 28.0 45 0.00098 36.7 2.7 47 420-479 190-236 (453)
105 PF03016 Exostosin: Exostosin 27.2 39 0.00084 34.8 2.0 33 544-577 37-69 (302)
106 KOG4442 Clathrin coat binding 24.0 58 0.0013 38.6 2.8 40 433-479 197-236 (729)
107 PF09241 Herp-Cyclin: Herpesvi 23.6 45 0.00097 29.2 1.4 20 21-40 11-30 (106)
108 KOG0473 Leucine-rich repeat pr 23.4 6.9 0.00015 40.8 -4.2 60 276-343 64-123 (326)
109 KOG0614 cGMP-dependent protein 22.2 1.1E+02 0.0023 35.7 4.2 57 3-63 262-318 (732)
110 COG2896 MoaA Molybdenum cofact 20.6 46 0.001 36.1 1.1 26 425-452 2-32 (322)
No 1
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-94 Score=749.98 Aligned_cols=379 Identities=35% Similarity=0.577 Sum_probs=315.8
Q ss_pred ccccccHHHHHHHhHHHHhcCCCCHHHHHHHHHHhhhcccCCCCceeEEEccCCceeEEEEecC--CCC--CCCCeEeec
Q 007072 5 SNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQ--SMP--KESNVFLVD 80 (619)
Q Consensus 5 ~~~~~~~~~f~~~H~~~l~~~~~P~~l~~~L~~kl~~~~fDag~~F~i~~~~~~~~~~~vv~~~--~l~--~~~~vflid 80 (619)
+.++++|.+|+++||+||+||||||+||++||+||++|+||||++|||+.++++++-.-.+|++ .++ +..++|+++
T Consensus 1 ~~~a~~f~~F~~~Hg~~L~ASgvPp~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe~e~arel~~~q~nd~~~~~~l~ 80 (631)
T KOG2155|consen 1 DRSAYPFSTFLDQHGGQLNASGVPPELWHRLYKKLSDQTFDAGDHFQIICEENEDDEETEFARELEDLQNNDEDNIFLLD 80 (631)
T ss_pred CCccccHHHHHHhcccccccCCCCHHHHHHHHHHhhhcccCCcCeeeEEEecccchhHHHHHHHHHhccCCCccceeeee
Confidence 4678999999999999999999999999999999999999999999999887643323335665 444 678899999
Q ss_pred cceeccchHHHHhhhcCcchHHHHHhhhcccCCCCchhhhhhhhhcccccCCCCcchhHHHHhhhhcccccCCCceeeee
Q 007072 81 HAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLE 160 (619)
Q Consensus 81 h~~tf~~~~a~~~L~~vp~L~~Rm~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~l~~L~ 160 (619)
|+.+|--.+|++...-..||.+|+++++++|.+...+.++ . ++++
T Consensus 81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~---t------------~~~l-------------------- 125 (631)
T KOG2155|consen 81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDE---T------------VEKL-------------------- 125 (631)
T ss_pred eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccH---H------------HHHh--------------------
Confidence 9999999999999999999999999999999665544221 0 1100
Q ss_pred cccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccc
Q 007072 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240 (619)
Q Consensus 161 Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Lei 240 (619)
+. +++
T Consensus 126 ------e~--------------------------~v~------------------------------------------- 130 (631)
T KOG2155|consen 126 ------ET--------------------------SVE------------------------------------------- 130 (631)
T ss_pred ------hc--------------------------cch-------------------------------------------
Confidence 00 000
Q ss_pred cccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccch
Q 007072 241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSV 320 (619)
Q Consensus 241 Ln~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~ 320 (619)
T Consensus 131 -------------------------------------------------------------------------------- 130 (631)
T KOG2155|consen 131 -------------------------------------------------------------------------------- 130 (631)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccCccchhhhccCcceeecccCCCCCCCCCChhhHHHHHH
Q 007072 321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLS 400 (619)
Q Consensus 321 ~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s~~~~~~~~~~~~~~~~~~~~~~~~e~~~~rV~~ 400 (619)
..+.+.+.++..|+|.+ .++++++++++| .|+-.|..++.++|++
T Consensus 131 ----------------------------~e~~e~l~~~s~l~G~~------~~~~~vd~~l~~-~~~~~P~~elv~~VL~ 175 (631)
T KOG2155|consen 131 ----------------------------KEEAEHLKKISSLTGNL------PRHESVDARLSS-YSVDDPKNELVEKVLK 175 (631)
T ss_pred ----------------------------hhHHHHHHHHHHhhCCC------CcccchhhccCc-ccccCcchHHHHHHHH
Confidence 12223344444555555 257788888888 7888888999999999
Q ss_pred HHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072 401 AMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL 480 (619)
Q Consensus 401 ~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~ 480 (619)
+||+|+|||+++++++.+++|+|||||||||||||||+||||+|||||||++ +|||||||++++..||||||||+
T Consensus 176 amWky~qtY~la~~~~~ek~svWYvMDefGsrvrHsdePnf~~aPf~fmPq~-----vaYsimwp~k~~~tgeE~trDfa 250 (631)
T KOG2155|consen 176 AMWKYSQTYSLAYQGEIEKKSVWYVMDEFGSRVRHSDEPNFRIAPFMFMPQN-----VAYSIMWPTKPVNTGEEITRDFA 250 (631)
T ss_pred HHHHhhheeecccCccccccceeEEHhhhhhhhccCCCCcceeeeheecchh-----cceeEEeeccCCCCchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCccchhhhccccccCChhhhHHHHHHHhhhhcccccCCCCCCCCCCccccCCCCCceEEEechhHHHhhcCCCCEE
Q 007072 481 YGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFV 560 (619)
Q Consensus 481 ~~~~~~~~R~a~L~pw~~~p~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lkVytd~~~v~~~Lt~~~F~ 560 (619)
+|++++++|+|+|+||+.+|+.+|..++.++-+...+.+.... .....++.+ |+++|||||.+||.+|||+|+|+
T Consensus 251 sg~~~p~~Rk~~l~pWa~tde~~~~~~~~e~~qa~~~e~k~s~---p~~s~pi~h--g~~~kVYtD~~Qv~e~Lt~p~f~ 325 (631)
T KOG2155|consen 251 SGVIHPEWRKYILQPWAATDETMIPDATLEYFQATEQETKQSA---PFTSLPILH--GRKIKVYTDDTQVTEHLTNPKFE 325 (631)
T ss_pred hcCCCHHHHHHHhccccCCCcccCCchHHHHHHHHHHhccccC---Ccccccccc--CceeEEEcCcHHHHHhccCCceE
Confidence 9999999999999999999888887765443333222221111 111123333 78999999999999999999999
Q ss_pred ecCCCCCccEEEEecccchhHHHhhCCCCceeeccCCCCchhhhhhHHHHHHHhhhcCC
Q 007072 561 ITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN 619 (619)
Q Consensus 561 lvd~~~eADIiW~~~h~~~d~k~~~~~~p~~~iNQFP~E~~lt~Kd~La~~~~~~~~~~ 619 (619)
+|+++++|||+|+++||+ |||++++++|++||||||||+|||||||||++++|++|-|
T Consensus 326 ~t~~~kdADilw~~~hf~-Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~g~~ 383 (631)
T KOG2155|consen 326 YTDDIKDADILWMIKHFH-DYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDPGKN 383 (631)
T ss_pred eccCccccceeeehhhHH-HHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999997 8999999999999999999999999999999999999854
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.8e-24 Score=232.80 Aligned_cols=234 Identities=24% Similarity=0.342 Sum_probs=193.2
Q ss_pred HHHHHhHHHHhcCCCCHHHHHHHHHHhhhcccCCCCceeEEEccC----C-----ceeEEEEecC-CCC---CCCCeEee
Q 007072 13 DFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCED----G-----RQRRLVLDSQ-SMP---KESNVFLV 79 (619)
Q Consensus 13 ~f~~~H~~~l~~~~~P~~l~~~L~~kl~~~~fDag~~F~i~~~~~----~-----~~~~~vv~~~-~l~---~~~~vfli 79 (619)
.|+++...+|+ .+|.+|-+ ..||+ +.++..+.= + ...|.|++|+ +++ +|.+||-+
T Consensus 35 ~WLkLnrt~L~--~vPeEL~~--lqkLE--------HLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 35 TWLKLNRTKLE--QVPEELSR--LQKLE--------HLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred eEEEechhhhh--hChHHHHH--Hhhhh--------hhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 46666677776 78888754 34553 333322211 1 1257888888 888 79999999
Q ss_pred ccceeccchHHHHhhhcCcchHHHHHhhhcccCCCCchhhhhhhhhcccccCCCCcchhHHHHhhhhcccccCCCceeee
Q 007072 80 DHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWL 159 (619)
Q Consensus 80 dh~~tf~~~~a~~~L~~vp~L~~Rm~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~l~~L 159 (619)
+...+.++| ++||++||.-+||++++..++
T Consensus 103 ~dLt~lDLS--hNqL~EvP~~LE~AKn~iVLN------------------------------------------------ 132 (1255)
T KOG0444|consen 103 KDLTILDLS--HNQLREVPTNLEYAKNSIVLN------------------------------------------------ 132 (1255)
T ss_pred ccceeeecc--hhhhhhcchhhhhhcCcEEEE------------------------------------------------
Confidence 999999999 999999999999999877666
Q ss_pred ecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccc
Q 007072 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239 (619)
Q Consensus 160 ~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Le 239 (619)
||+|+|+. ||..++.++.+|.+||||.|+|+++| +++++|.+|++|.||+||+...+ ++++|+++
T Consensus 133 -LS~N~Iet---IPn~lfinLtDLLfLDLS~NrLe~LP---PQ~RRL~~LqtL~Ls~NPL~hfQ--------LrQLPsmt 197 (1255)
T KOG0444|consen 133 -LSYNNIET---IPNSLFINLTDLLFLDLSNNRLEMLP---PQIRRLSMLQTLKLSNNPLNHFQ--------LRQLPSMT 197 (1255)
T ss_pred -cccCcccc---CCchHHHhhHhHhhhccccchhhhcC---HHHHHHhhhhhhhcCCChhhHHH--------HhcCccch
Confidence 99999999 99999999999999999999999998 79999999999999999999887 77777665
Q ss_pred ---ccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 240 ---iLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
+|.++.|+++. .+.|.+++ .|.+|..+|||.|.+..+|.++| ++++|++||||+|+|.
T Consensus 198 sL~vLhms~TqRTl------------~N~Ptsld----~l~NL~dvDlS~N~Lp~vPecly---~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTL------------DNIPTSLD----DLHNLRDVDLSENNLPIVPECLY---KLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhhcccccchh------------hcCCCchh----hhhhhhhccccccCCCcchHHHh---hhhhhheeccCcCcee
Confidence 78889998874 56677777 59999999999999999999999 6999999999999998
Q ss_pred ccchHH------------------HHHHHhCCCCCccccccCCC
Q 007072 317 QNSVRE------------------LLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 317 ~i~~~~------------------l~~~l~~~~~L~sL~ld~p~ 342 (619)
+++... |+..+.+++.|+.|++..|.
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence 877211 35567888888888876553
No 3
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=6.5e-13 Score=129.55 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=37.2
Q ss_pred CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhh
Q 007072 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILES 354 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~ 354 (619)
..|++|+|++|+|.++...... ++|+|+.|++++|.|.++.. ...+..||+|+.|.+..|+. ...|...++..
T Consensus 64 ~~L~~L~L~~N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEGLDK--NLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp TT--EEE--SS---S-CHHHHH--H-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred hhhhhcccCCCCCCccccchHH--hCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 3444444444445444332222 34555555555555544441 12344555555555554443 23456899999
Q ss_pred cCccccccCccchhh
Q 007072 355 LPTLCTLNGVTASKI 369 (619)
Q Consensus 355 lp~L~~LNg~~~s~~ 369 (619)
+|+|+.|+|.+++..
T Consensus 139 lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 139 LPSLKVLDGQDVTEE 153 (175)
T ss_dssp -TT-SEETTEETTS-
T ss_pred cChhheeCCEEccHH
Confidence 999999999999843
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=8.6e-13 Score=145.48 Aligned_cols=164 Identities=19% Similarity=0.274 Sum_probs=124.8
Q ss_pred hhcccccCC---CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccc
Q 007072 145 IHNATEKGD---GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221 (619)
Q Consensus 145 ~~~~~~~g~---~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~ 221 (619)
+.+..++++ ..++.|+||+|.|.. +..+.-+-++.|..|+|+.|.|..++ .+.+..|.+|+.|+|+.|.+.+
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~r---ih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQR---IHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhhe---eecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhcccccchHH
Confidence 334444443 455567777777777 55566668899999999999999998 6899999999999999999987
Q ss_pred cccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301 (619)
Q Consensus 222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~ 301 (619)
.. +..+.++.+|+.|+++ .|...|.+-=-+ ..+..|.+|+.|+|.||+|..+|...|+ +
T Consensus 356 l~-----e~af~~lssL~~LdLr--~N~ls~~IEDaa------------~~f~gl~~LrkL~l~gNqlk~I~krAfs--g 414 (873)
T KOG4194|consen 356 LA-----EGAFVGLSSLHKLDLR--SNELSWCIEDAA------------VAFNGLPSLRKLRLTGNQLKSIPKRAFS--G 414 (873)
T ss_pred HH-----hhHHHHhhhhhhhcCc--CCeEEEEEecch------------hhhccchhhhheeecCceeeecchhhhc--c
Confidence 75 5678999999999987 343333321000 0122488999999999999999999998 9
Q ss_pred CCCCcccccCCCCCCccchHHHHHHHhCCCCCcccccc
Q 007072 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld 339 (619)
|++|++|||.+|.|.++. ...|..+ .|+.|.+.
T Consensus 415 l~~LE~LdL~~NaiaSIq----~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQ----PNAFEPM-ELKELVMN 447 (873)
T ss_pred CcccceecCCCCcceeec----ccccccc-hhhhhhhc
Confidence 999999999999999988 3445555 66666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.22 E-value=6e-12 Score=138.95 Aligned_cols=203 Identities=21% Similarity=0.183 Sum_probs=112.0
Q ss_pred hhhhcccccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072 143 SEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (619)
Q Consensus 143 ~~~~~~~~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~ 222 (619)
.||..-.=-...+|+.|.|++|.|.+ +..+.|..+.+|..|-|++|.|+.+| ...+++|++|+.|+|+-|+|...
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~---l~~~~F~~lnsL~tlkLsrNrittLp--~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITT---LETGHFDSLNSLLTLKLSRNRITTLP--QRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccc---cccccccccchheeeecccCcccccC--HHHhhhcchhhhhhccccceeee
Confidence 34444444445778888888888888 77777788888888888888888887 67888888888888888887754
Q ss_pred ccchhhhHHhhcCCcccccccccccccccccccccc-ccc-----CCCCCCccc-cCCCcCCcccccccCccccccCccc
Q 007072 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG-EVY-----DKDNPSSLC-LRDRPLQSVTSLDLSNRCIHNLVNK 295 (619)
Q Consensus 223 ~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~-~~~-----~~~~p~~l~-~~~~~L~~L~~LdLS~N~I~~Lp~~ 295 (619)
. + ..+++||+|+.|-+...+-.-.-.=.|.+ ++. .-+.-..+. ...-.|.+|+.||||+|.|.++..+
T Consensus 237 e--~---ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 237 E--G---LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred h--h---hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 3 1 23677888877666421111000000100 000 000000000 0011355555555666655555555
Q ss_pred ccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCcccccc
Q 007072 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362 (619)
Q Consensus 296 ~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LN 362 (619)
.++ -.+.|+.|+|+.|.|..++ .+.|..+..|+.|++..|..-... -..+.-+.+|+.||
T Consensus 312 ~Ws--ftqkL~~LdLs~N~i~~l~----~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 312 SWS--FTQKLKELDLSSNRITRLD----EGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLD 371 (873)
T ss_pred hhh--hcccceeEeccccccccCC----hhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhc
Confidence 544 4455556666666555555 344555556666665555321111 22334455555553
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.5e-12 Score=135.64 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=67.8
Q ss_pred cCCCceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072 151 KGDGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229 (619)
Q Consensus 151 ~g~~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~ 229 (619)
..-..+....|+++.+.. .+. ..+..||+++.|||++|.+.++.++++.+..||+|+.|+|+.|++......
T Consensus 118 sn~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---- 190 (505)
T ss_pred hhHHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----
Confidence 334667778899999887 222 466799999999999999999999999999999999999999999876521
Q ss_pred HHhhcCCcccccccccc
Q 007072 230 AILQGCPKLEIYNSNFT 246 (619)
Q Consensus 230 ~il~~lP~LeiLn~~~T 246 (619)
.+-..++.|+.|+++-+
T Consensus 191 ~~~~~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSC 207 (505)
T ss_pred cchhhhhhhheEEeccC
Confidence 11224555555554433
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=3.9e-12 Score=123.05 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=126.0
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
++.|.+|.||+|.|.. +|++++ .+.+|+.|+|++|+|+.+| ..++.|++|+.|+++-|++.-.. .-+
T Consensus 32 ~s~ITrLtLSHNKl~~---vppnia-~l~nlevln~~nnqie~lp---~~issl~klr~lnvgmnrl~~lp------rgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV---VPPNIA-ELKNLEVLNLSNNQIEELP---TSISSLPKLRILNVGMNRLNILP------RGF 98 (264)
T ss_pred hhhhhhhhcccCceee---cCCcHH-HhhhhhhhhcccchhhhcC---hhhhhchhhhheecchhhhhcCc------ccc
Confidence 4567889999999988 777754 5789999999999999997 67899999999999999987554 237
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
+.||.||+|++.+.... ....|+..+ -+..|+.|.|++|...-+|+.+- ++.+|+.|.+|+
T Consensus 99 gs~p~levldltynnl~------------e~~lpgnff----~m~tlralyl~dndfe~lp~dvg---~lt~lqil~lrd 159 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLN------------ENSLPGNFF----YMTTLRALYLGDNDFEILPPDVG---KLTNLQILSLRD 159 (264)
T ss_pred CCCchhhhhhccccccc------------cccCCcchh----HHHHHHHHHhcCCCcccCChhhh---hhcceeEEeecc
Confidence 89999999998764322 123454444 58889999999999999999888 699999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|.+-+++ +.+..+..|++|.+..|.
T Consensus 160 ndll~lp-----keig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 160 NDLLSLP-----KEIGDLTRLRELHIQGNR 184 (264)
T ss_pred CchhhCc-----HHHHHHHHHHHHhcccce
Confidence 9998766 667778889999887664
No 8
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.3e-11 Score=124.67 Aligned_cols=198 Identities=24% Similarity=0.293 Sum_probs=124.2
Q ss_pred eeecccCCCCcccccccc-ccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 158 WLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 158 ~L~Ls~~~I~~~~li~l~-l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
-|.+-+|.|+.. --.. +.+.+..+..|||.+|+|+++.++..++.+||+|++||||.|+++.--. .......
T Consensus 49 llvln~~~id~~--gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~ 121 (418)
T KOG2982|consen 49 LLVLNGSIIDNE--GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLK 121 (418)
T ss_pred hheecCCCCCcc--hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cCccccc
Confidence 577778888771 1111 2368899999999999999999999999999999999999999886431 1122334
Q ss_pred ccccccccccccccccc--------------ccccccccCCCCC--Cccc------cCCCcCCcccccccCccccccCcc
Q 007072 237 KLEIYNSNFTINFGEWA--------------LGFCGEVYDKDNP--SSLC------LRDRPLQSVTSLDLSNRCIHNLVN 294 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~--------------l~fc~~~~~~~~p--~~l~------~~~~~L~~L~~LdLS~N~I~~Lp~ 294 (619)
+|.++-++.|.. .|. +-.+.+.+.+=+- .+.+ .+.+.+.++..+-++-|++.++.+
T Consensus 122 nl~~lVLNgT~L--~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 122 NLRVLVLNGTGL--SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ceEEEEEcCCCC--ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 555555444432 122 1112221111000 0000 011122222222222333332222
Q ss_pred ---cccC-------------CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC---CC--chhHHHhh
Q 007072 295 ---KAFS-------------PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP---LG--ESAIEILE 353 (619)
Q Consensus 295 ---~~f~-------------~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~---l~--~~~~~il~ 353 (619)
++|- ...+|.+..|||+.|+|.+|.. ...+.+|++|..|.+..++. +. .-..-+++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS---VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH---HHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 1221 1358999999999999999985 55689999999999976653 22 22267899
Q ss_pred hcCccccccCccch
Q 007072 354 SLPTLCTLNGVTAS 367 (619)
Q Consensus 354 ~lp~L~~LNg~~~s 367 (619)
+|++++.|||..++
T Consensus 277 RL~~v~vLNGskIs 290 (418)
T KOG2982|consen 277 RLTKVQVLNGSKIS 290 (418)
T ss_pred eccceEEecCcccc
Confidence 99999999999887
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=8.1e-11 Score=114.92 Aligned_cols=129 Identities=26% Similarity=0.372 Sum_probs=54.1
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. +. ++...+.+|+.|+|++|.|+.++ .+.+|++|+.|+|++|.+.....+ +..
T Consensus 19 ~~~~~L~L~~n~I~~--Ie--~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~-----l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IE--NLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEG-----LDK 85 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHH-----HHH
T ss_pred ccccccccccccccc--cc--chhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccc-----hHH
Confidence 567889999999998 33 34457899999999999999987 577899999999999999876411 112
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
. +++|+.|+|++|+|.++.. +-....+|+|+.|+|.||
T Consensus 86 ~-----------------------------------------lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 86 N-----------------------------------------LPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp H------------------------------------------TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-
T ss_pred h-----------------------------------------CCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCC
Confidence 2 4566777788888888755 222338999999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGV 338 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~l 338 (619)
++.+-..= =.-++..+|+|+.|+-
T Consensus 124 Pv~~~~~Y-R~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 124 PVCEKKNY-RLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGGGSTTH-HHHHHHH-TT-SEETT
T ss_pred cccchhhH-HHHHHHHcChhheeCC
Confidence 99876511 1346889999999984
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.03 E-value=5.7e-10 Score=133.25 Aligned_cols=185 Identities=23% Similarity=0.263 Sum_probs=106.7
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
+.+..|+|++|+|.. .....+..+|+|+.|+|++|.+. .++ ...+.++++|+.|+|++|.+....+.
T Consensus 69 ~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L~Ls~n~~~~~ip--~~~~~~l~~L~~L~Ls~n~l~~~~p~------- 136 (968)
T PLN00113 69 SRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIP--DDIFTTSSSLRYLNLSNNNFTGSIPR------- 136 (968)
T ss_pred CcEEEEEecCCCccc---cCChHHhCCCCCCEEECCCCccCCcCC--hHHhccCCCCCEEECcCCccccccCc-------
Confidence 467778888887776 22344567788888888888775 343 34455777778888777776543321
Q ss_pred hcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~ 301 (619)
..+++|+.|+++...-.+..- |...++.+....|..+ ..+.+|+.|+|++|.+....+..|. +
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~p~~l~--~ 210 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL----TNLTSLEFLTLASNQLVGQIPRELG--Q 210 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh----hhCcCCCeeeccCCCCcCcCChHHc--C
Confidence 235666666654322211100 0000111111122222 2467778888888877754444444 6
Q ss_pred CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+++|+.|+|++|.+...- +..+.++++|++|++..+...+.. -..+..+++|+.|
T Consensus 211 l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 265 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEI----PYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYL 265 (968)
T ss_pred cCCccEEECcCCccCCcC----ChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEE
Confidence 788888888888776432 455778888888888766432111 2334556667665
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=5.7e-10 Score=133.25 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=108.6
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|+|++|.|.. .+|.+++..+++|+.|+|++|.+...-+ ...+++|+.|+|++|.+....+ ..+
T Consensus 92 l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~~~~~~p-----~~~ 160 (968)
T PLN00113 92 LPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNMLSGEIP-----NDI 160 (968)
T ss_pred CCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCcccccCC-----hHH
Confidence 3566777777777654 3555555566666666666665543210 1345555555555555543221 123
Q ss_pred hcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~ 301 (619)
..+++|+.|+++.+...+... |...++.+....|.. ...+.+|+.|+|++|.+....+..|. +
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~l~--~ 234 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIG--G 234 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCccCCcCChhHh--c
Confidence 445555555554332211100 001111111122322 23588999999999999854444454 8
Q ss_pred CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+++|++|++++|.+...- +..+.++++|+.|.+..+...+.. -..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 289 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPI----PSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISL 289 (968)
T ss_pred CCCCCEEECcCceecccc----ChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEE
Confidence 999999999999986433 567899999999999877532211 1234556777766
No 12
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=3.6e-10 Score=117.20 Aligned_cols=144 Identities=20% Similarity=0.301 Sum_probs=91.0
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~ 258 (619)
.+.-|+.||||+|.|..+++ .++=+|.++.|+||.|.+...++ +..+++|..|+++....+
T Consensus 282 TWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~N~Ls--------- 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSGNLLA--------- 342 (490)
T ss_pred hHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh-------hhhcccceEeecccchhH---------
Confidence 44556666666666665553 33445556666666666655542 455566666655532211
Q ss_pred cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (619)
Q Consensus 259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l 338 (619)
.++.-...|-+++.|.|++|.|..+.. ...+=+|..|++++|+|.+++. .+-++++|+|+.|.+
T Consensus 343 ---------~~~Gwh~KLGNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 343 ---------ECVGWHLKLGNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRL 406 (490)
T ss_pred ---------hhhhhHhhhcCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHH---hcccccccHHHHHhh
Confidence 000001146788999999999998865 2246678999999999987762 455889999999998
Q ss_pred cCCCC--CCchhHHHhhhcCc
Q 007072 339 DIPGP--LGESAIEILESLPT 357 (619)
Q Consensus 339 d~p~~--l~~~~~~il~~lp~ 357 (619)
-.|+. +..|.-++++.+..
T Consensus 407 ~~NPl~~~vdYRTKVLa~FGE 427 (490)
T KOG1259|consen 407 TGNPLAGSVDYRTKVLARFGE 427 (490)
T ss_pred cCCCccccchHHHHHHHHHhh
Confidence 76654 44566788777764
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=7.5e-09 Score=106.93 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=17.1
Q ss_pred CCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 303 PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 303 ~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
+.|++|++++|.|.+.....+...+..+++|+.|+++.|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 444444444444443333333344444444444444443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.71 E-value=2.7e-09 Score=114.07 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=42.6
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCC-Ccccccc
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN-NPVLKKC 223 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~ 223 (619)
..+.|+.|+|.. +|...|+.+++|+.|||+.|.|+.+. ..++.||++|..|-|-+ |+|....
T Consensus 70 veirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~--p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 70 VEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIA--PDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred eEEEeccCCccc---CChhhccchhhhceecccccchhhcC--hHhhhhhHhhhHHHhhcCCchhhhh
Confidence 345577777777 77777777777777777777777766 56777777776666655 6666543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=1.7e-08 Score=104.24 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=35.2
Q ss_pred CcccccccCccccccCccccc--CCCCCCCCcccccCCCCCCccchHHHHHHH-hCCCCCccccccCCC
Q 007072 277 QSVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNIRGNPLEQNSVRELLEVL-KGFPCLQSLGVDIPG 342 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l-~~~~~L~sL~ld~p~ 342 (619)
.+|+.|+|++|.+.......+ ....+++|++|++++|++.+..+..+...+ .+.+.|++|+++.+.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 466677777776653332111 112566677777777766654433332221 234667777666553
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.4e-09 Score=111.91 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=140.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|-+..- .....+...+|+|+.|+|+.|++...-. ...---+++||.|.||+|-++.+. ..-++.
T Consensus 146 ~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~~lK~L~l~~CGls~k~----V~~~~~ 219 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLSHLKQLVLNSCGLSWKD----VQWILL 219 (505)
T ss_pred CcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCcc-ccchhhhhhhheEEeccCCCCHHH----HHHHHH
Confidence 5678899999997761 2234556799999999999999887642 223336999999999999999655 567889
Q ss_pred cCCccccccccccccccccccccccccc------CC-CCC-Ccccc--CCCcCCcccccccCccccccCcc--c--ccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVY------DK-DNP-SSLCL--RDRPLQSVTSLDLSNRCIHNLVN--K--AFSP 299 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~------~~-~~p-~~l~~--~~~~L~~L~~LdLS~N~I~~Lp~--~--~f~~ 299 (619)
.||+|+.|.+......+-- .+...++ +. +++ -...+ -...++.|+.|+++.|+|.++-. . ..+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred hCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 9999999888643222100 0111000 00 000 11111 12246666677777777665432 1 1122
Q ss_pred CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh---HHHhhhcCccccccCccchhhh-ccCcc
Q 007072 300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLCTLNGVTASKIL-EEGKH 375 (619)
Q Consensus 300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~---~~il~~lp~L~~LNg~~~s~~~-~~~~~ 375 (619)
..+++|++|+++.|+|.+|.+ ..-+-.+++|+.|.+..++.-.... +.++++++.|..||+.+++--. -.+
T Consensus 298 ~~f~kL~~L~i~~N~I~~w~s---l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A-- 372 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRDWRS---LNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA-- 372 (505)
T ss_pred cccccceeeecccCccccccc---cchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh--
Confidence 357777777777777777763 3334555666666666554322211 7788888888888888886321 111
Q ss_pred eeecccCCCCCCCCCChhhHHHHHHHHHhhhce
Q 007072 376 VIDSMLQPRLPEWSADQPLADRVLSAMWLYLMT 408 (619)
Q Consensus 376 ~~~~~~~~~~~~~~~~e~~~~rV~~~mWk~~~t 408 (619)
+-.-...||.+||++...
T Consensus 373 ---------------El~~~~~~~~ne~s~~~~ 390 (505)
T KOG3207|consen 373 ---------------ELYYLSKIFDNEISDAEE 390 (505)
T ss_pred ---------------hhhHHhhhhhhhhhhhhc
Confidence 123356788999988663
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=7.3e-09 Score=110.85 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=50.5
Q ss_pred CcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 274 ~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
..|.+|+.||||+|.|+.+-.+.|. ++..|+.|-|.+|+|..++ ...|.++..|+.|.+..|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCe
Confidence 3678888888888888888888886 7888888888888888777 5677888888888877665
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.60 E-value=4.5e-09 Score=117.15 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=109.5
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
.|+.+.||.|...++.. +|-.+ +.|.+|+.|++++|+|.++. +.++.||.|+++++-.|.+... |+...|
T Consensus 30 qMt~~~WLkLnrt~L~~---vPeEL-~~lqkLEHLs~~HN~L~~vh---GELs~Lp~LRsv~~R~N~LKns---GiP~di 99 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQ---VPEEL-SRLQKLEHLSMAHNQLISVH---GELSDLPRLRSVIVRDNNLKNS---GIPTDI 99 (1255)
T ss_pred HhhheeEEEechhhhhh---ChHHH-HHHhhhhhhhhhhhhhHhhh---hhhccchhhHHHhhhccccccC---CCCchh
Confidence 36889999999999888 55433 46888999999999998876 7889999999999988886543 355555
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
++ +..|.+|+++..+.. +-|.+++ .-.++-.|+||+|+|..+|+.+|. +|.-|-.|+||
T Consensus 100 F~-l~dLt~lDLShNqL~--------------EvP~~LE----~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS 158 (1255)
T KOG0444|consen 100 FR-LKDLTILDLSHNQLR--------------EVPTNLE----YAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLS 158 (1255)
T ss_pred cc-cccceeeecchhhhh--------------hcchhhh----hhcCcEEEEcccCccccCCchHHH--hhHhHhhhccc
Confidence 54 677888888754432 2333333 133556778888888888888776 77888888888
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|.++.++ .-+.++..|++|.+++|+
T Consensus 159 ~NrLe~LP-----PQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 159 NNRLEMLP-----PQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred cchhhhcC-----HHHHHHhhhhhhhcCCCh
Confidence 88877766 223444555555555544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.56 E-value=7.2e-08 Score=112.97 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=31.8
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+|+.|+||+|.|..+|. ..++|+.|++++|+|..++ ..+.++++|+.|+++.|..
T Consensus 403 ~L~~LdLS~N~LssIP~------l~~~L~~L~Ls~NqLt~LP-----~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 403 ELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRLP-----ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCCEEEccCCcCCCCCc------chhhhhhhhhccCcccccC-----hHHhhccCCCeEECCCCCC
Confidence 34444555555444442 1234556666666666544 3466778888888877753
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.56 E-value=7e-09 Score=100.78 Aligned_cols=131 Identities=26% Similarity=0.304 Sum_probs=107.5
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~ 258 (619)
.+.+++.|-||+|||+.++ +.+..|.+|++|++++|.+...... ...+|.|.+||+.....
T Consensus 31 ~~s~ITrLtLSHNKl~~vp---pnia~l~nlevln~~nnqie~lp~~------issl~klr~lnvgmnrl---------- 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP---PNIAELKNLEVLNLSNNQIEELPTS------ISSLPKLRILNVGMNRL---------- 91 (264)
T ss_pred chhhhhhhhcccCceeecC---CcHHHhhhhhhhhcccchhhhcChh------hhhchhhhheecchhhh----------
Confidence 5678899999999999987 6778899999999999999987533 68899999999874332
Q ss_pred cccCCCCCCccccCCCcCCcccccccCccccc--cCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccc
Q 007072 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH--NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336 (619)
Q Consensus 259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~--~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL 336 (619)
..+.+++..+..|+.|||++|.+. .+|..+| .|..|+-|-|++|.++-++ .-++++++|+-|
T Consensus 92 --------~~lprgfgs~p~levldltynnl~e~~lpgnff---~m~tlralyl~dndfe~lp-----~dvg~lt~lqil 155 (264)
T KOG0617|consen 92 --------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFF---YMTTLRALYLGDNDFEILP-----PDVGKLTNLQIL 155 (264)
T ss_pred --------hcCccccCCCchhhhhhccccccccccCCcchh---HHHHHHHHHhcCCCcccCC-----hhhhhhcceeEE
Confidence 223355667889999999999998 7888888 6999999999999987666 557888999999
Q ss_pred cccCCCCC
Q 007072 337 GVDIPGPL 344 (619)
Q Consensus 337 ~ld~p~~l 344 (619)
.+..|..+
T Consensus 156 ~lrdndll 163 (264)
T KOG0617|consen 156 SLRDNDLL 163 (264)
T ss_pred eeccCchh
Confidence 88766544
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.43 E-value=3.2e-07 Score=107.68 Aligned_cols=145 Identities=18% Similarity=0.082 Sum_probs=67.4
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccccc----------
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD---------- 224 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~---------- 224 (619)
.+..|.+++|+|.. +|. ..|+|++|+|++|+|+.++. ..++|+.|+|++|.+.....
T Consensus 223 ~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsLP~------lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLPALPSGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcccC------cccccceeeccCCchhhhhhchhhcCEEEC
Confidence 45667777777666 331 24677777777777776652 12445555555554443210
Q ss_pred -chhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCC
Q 007072 225 -HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303 (619)
Q Consensus 225 -~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~ 303 (619)
++-+..+...+|+|+.|+++..+-.+--.+..+-..+...+ +.+........+|+.||||+|+|..+|. ..+
T Consensus 290 s~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~-N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~------lp~ 362 (788)
T PRK15387 290 FGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN-NQLTSLPTLPSGLQELSVSDNQLASLPT------LPS 362 (788)
T ss_pred cCCccccccccccccceeECCCCccccCCCCccccccccccc-CccccccccccccceEecCCCccCCCCC------CCc
Confidence 00001111234677777775432211000000000000000 0111111122467788888888887764 224
Q ss_pred CCcccccCCCCCCccc
Q 007072 304 SLSHLNIRGNPLEQNS 319 (619)
Q Consensus 304 ~L~~LnLs~N~i~~i~ 319 (619)
+|+.|++++|.|..++
T Consensus 363 ~L~~L~Ls~N~L~~LP 378 (788)
T PRK15387 363 ELYKLWAYNNRLTSLP 378 (788)
T ss_pred ccceehhhccccccCc
Confidence 5555666666655444
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.42 E-value=3.5e-08 Score=105.91 Aligned_cols=151 Identities=25% Similarity=0.294 Sum_probs=96.3
Q ss_pred eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
+....++.|+|.. +|-++..--.-++.+.++.|++.-+ +..++.+++|..|+|++|++....-+ +.++
T Consensus 390 Vt~VnfskNqL~e---lPk~L~~lkelvT~l~lsnn~isfv---~~~l~~l~kLt~L~L~NN~Ln~LP~e------~~~l 457 (565)
T KOG0472|consen 390 VTSVNFSKNQLCE---LPKRLVELKELVTDLVLSNNKISFV---PLELSQLQKLTFLDLSNNLLNDLPEE------MGSL 457 (565)
T ss_pred eEEEecccchHhh---hhhhhHHHHHHHHHHHhhcCccccc---hHHHHhhhcceeeecccchhhhcchh------hhhh
Confidence 4445555555555 3333332222223334455544443 35666677778888888877765422 3455
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
-.|+++|+++.. + +..|.++- .+.-|+.+-.|+|+|..++++-.. +|.+|..|||.+|.|
T Consensus 458 v~Lq~LnlS~Nr-F-------------r~lP~~~y----~lq~lEtllas~nqi~~vd~~~l~--nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 458 VRLQTLNLSFNR-F-------------RMLPECLY----ELQTLETLLASNNQIGSVDPSGLK--NMRNLTTLDLQNNDL 517 (565)
T ss_pred hhhheecccccc-c-------------ccchHHHh----hHHHHHHHHhccccccccChHHhh--hhhhcceeccCCCch
Confidence 557777776531 1 22232222 355677777788888888886444 899999999999999
Q ss_pred CccchHHHHHHHhCCCCCccccccCCCC
Q 007072 316 EQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 316 ~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.+++ ..+++|.+|++|.+++|++
T Consensus 518 q~IP-----p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 518 QQIP-----PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhCC-----hhhccccceeEEEecCCcc
Confidence 8887 6899999999999998874
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.42 E-value=5e-08 Score=113.14 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=55.1
Q ss_pred cccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCc
Q 007072 255 GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334 (619)
Q Consensus 255 ~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~ 334 (619)
.||+++.-.+.. .+......+|+.|+||+|+|..+|.+.+. +|+.|+.|+||||.+..++ ..+..|+.|+
T Consensus 364 LylanN~Ltd~c---~p~l~~~~hLKVLhLsyNrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp-----~tva~~~~L~ 433 (1081)
T KOG0618|consen 364 LYLANNHLTDSC---FPVLVNFKHLKVLHLSYNRLNSFPASKLR--KLEELEELNLSGNKLTTLP-----DTVANLGRLH 433 (1081)
T ss_pred HHHhcCcccccc---hhhhccccceeeeeecccccccCCHHHHh--chHHhHHHhcccchhhhhh-----HHHHhhhhhH
Confidence 577765422221 12223466899999999999999998888 9999999999999999887 2344555555
Q ss_pred cccccCC
Q 007072 335 SLGVDIP 341 (619)
Q Consensus 335 sL~ld~p 341 (619)
.|....|
T Consensus 434 tL~ahsN 440 (1081)
T KOG0618|consen 434 TLRAHSN 440 (1081)
T ss_pred HHhhcCC
Confidence 5554433
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.41 E-value=6.3e-07 Score=110.03 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=17.2
Q ss_pred cccCcceeeEeccccccccc
Q 007072 415 EKIDETSVWYVMDELGSAVR 434 (619)
Q Consensus 415 ~~~~~~p~WYvmDE~GsaI~ 434 (619)
.++.++|.||-+...|+.+.
T Consensus 960 l~g~evp~~f~hr~~g~sl~ 979 (1153)
T PLN03210 960 LSGEEVPSYFTHRTTGASLT 979 (1153)
T ss_pred CCCccCchhccCCcccceee
Confidence 35788999999999999885
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=1.2e-07 Score=98.76 Aligned_cols=130 Identities=26% Similarity=0.301 Sum_probs=95.9
Q ss_pred CceeeeecccCCCCcccccccccc-CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~-~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|+||+|.|... +=+ .-.|.++.|+||.|.|..++ .+..|++|+.||||+|.+.... .+-
T Consensus 284 q~LtelDLS~N~I~~i-----DESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~Ls~~~------Gwh 348 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-----DESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLLAECV------GWH 348 (490)
T ss_pred hhhhhccccccchhhh-----hhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchhHhhh------hhH
Confidence 3567799999998871 112 23589999999999999875 5899999999999999988754 123
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs 311 (619)
..+-|++.|+++ +|.. -.+ .+.+.|.+|..||+++|+|..+.. .... ++|-|++|.|+
T Consensus 349 ~KLGNIKtL~La--~N~i----------------E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 LKLGNIKTLKLA--QNKI----------------ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLT 407 (490)
T ss_pred hhhcCEeeeehh--hhhH----------------hhh-hhhHhhhhheeccccccchhhHHHhcccc--cccHHHHHhhc
Confidence 445566666654 1110 000 134468899999999999999866 2223 79999999999
Q ss_pred CCCCCccc
Q 007072 312 GNPLEQNS 319 (619)
Q Consensus 312 ~N~i~~i~ 319 (619)
+|+|.-+.
T Consensus 408 ~NPl~~~v 415 (490)
T KOG1259|consen 408 GNPLAGSV 415 (490)
T ss_pred CCCccccc
Confidence 99997665
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=2.9e-07 Score=108.01 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=92.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. +|..+ +++|+.|+|++|+|+.++... .++|+.|+|++|.+....+ .
T Consensus 262 s~L~~L~Ls~N~L~~---LP~~l---~~sL~~L~Ls~N~Lt~LP~~l-----p~sL~~L~Ls~N~Lt~LP~-----~--- 322 (754)
T PRK15370 262 SALQSLDLFHNKISC---LPENL---PEELRYLSVYDNSIRTLPAHL-----PSGITHLNVQSNSLTALPE-----T--- 322 (754)
T ss_pred CCCCEEECcCCccCc---ccccc---CCCCcEEECCCCccccCcccc-----hhhHHHHHhcCCccccCCc-----c---
Confidence 368889999999887 55433 258899999999988876321 1357777777777665431 1
Q ss_pred cCCccccccccccccc---ccc-----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072 234 GCPKLEIYNSNFTINF---GEW-----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~---~~~-----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L 305 (619)
-+++|+.|+++..+.. ..+ .|..+.+.+. ..|. ....+|+.|+|++|.|..+|..+. ++|
T Consensus 323 l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~------~lp~~L~~LdLs~N~Lt~LP~~l~-----~sL 390 (754)
T PRK15370 323 LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPE------TLPPTITTLDVSRNALTNLPENLP-----AAL 390 (754)
T ss_pred ccccceeccccCCccccCChhhcCcccEEECCCCCCC-cCCh------hhcCCcCEEECCCCcCCCCCHhHH-----HHH
Confidence 1244555444322111 000 0000011110 1111 112467777777777777766432 357
Q ss_pred cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+.|++++|+|..++ ..++..+..++++..|.+..|+.
T Consensus 391 ~~LdLs~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 391 QIMQASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHhhccCCcccCc-hhHHHHhhcCCCccEEEeeCCCc
Confidence 77888888887666 23455666778888888887763
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=2e-07 Score=74.82 Aligned_cols=60 Identities=28% Similarity=0.480 Sum_probs=54.7
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi 219 (619)
.+++|++++|+|.. ++.+.+.++++|+.|+|++|+|..++ ...+.+|++|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~l~~i~--~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNNLTSIP--PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESE---ECTTTTTTGTTESEEEETSSSESEEE--TTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCccCccC--HHHHcCCCCCCEEeCcCCcC
Confidence 47889999999999 88899999999999999999999987 56899999999999999975
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.34 E-value=6.2e-07 Score=105.22 Aligned_cols=59 Identities=27% Similarity=0.295 Sum_probs=47.3
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
..++.|+|++|+|.. +|..+. .+|+.|+|++|+|..++.. + .++|+.|+|++|.+....
T Consensus 241 ~~L~~L~Ls~N~L~~---LP~~l~---s~L~~L~Ls~N~L~~LP~~---l--~~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 241 DTIQEMELSINRITE---LPERLP---SALQSLDLFHNKISCLPEN---L--PEELRYLSVYDNSIRTLP 299 (754)
T ss_pred ccccEEECcCCccCc---CChhHh---CCCCEEECcCCccCccccc---c--CCCCcEEECCCCccccCc
Confidence 468999999999987 565543 4799999999999988732 2 258999999999987653
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.28 E-value=2.7e-07 Score=107.25 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=112.4
Q ss_pred ccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072 150 EKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229 (619)
Q Consensus 150 ~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~ 229 (619)
|.-+..+.-|.+.+|.+.+.+.. ...+++.|+-|+|++|.|.++| ...+++++.|+.|+||||.+....
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsyNrL~~fp--as~~~kle~LeeL~LSGNkL~~Lp------ 423 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSYNRLNSFP--ASKLRKLEELEELNLSGNKLTTLP------ 423 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchh---hhccccceeeeeecccccccCC--HHHHhchHHhHHHhcccchhhhhh------
Confidence 34445666788999999984443 3568899999999999999998 778999999999999999987664
Q ss_pred HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccc
Q 007072 230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (619)
Q Consensus 230 ~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln 309 (619)
.-...|+.|++|..+...- ...| ....+.+|+.+|||.|.++.+--..- ...|+|++||
T Consensus 424 ~tva~~~~L~tL~ahsN~l--------------~~fP-----e~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLd 482 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQL--------------LSFP-----ELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLD 482 (1081)
T ss_pred HHHHhhhhhHHHhhcCCce--------------eech-----hhhhcCcceEEecccchhhhhhhhhh--CCCcccceee
Confidence 2245566777665431110 0112 23358899999999999996533111 1348999999
Q ss_pred cCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
++||.-...+ .+.|..|+++....++.+
T Consensus 483 lSGN~~l~~d----~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 483 LSGNTRLVFD----HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccCCcccccc----hhhhHHhhhhhheecccC
Confidence 9999865555 455677777777777766
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=2.4e-07 Score=74.35 Aligned_cols=60 Identities=27% Similarity=0.459 Sum_probs=55.0
Q ss_pred CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
++|+.|+|++|+|..+|...|. ++++|+.|++++|.|..++ ...|.++++|++|+++.|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIP----PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEE----TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccC----HHHHcCCCCCCEEeCcCCc
Confidence 3689999999999999999998 9999999999999999998 6779999999999988764
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.25 E-value=2.6e-06 Score=104.64 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=43.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
.++..|++++|.|.. ++-. ...+++|+.|+|++| .+..++ .+..+++|+.|+|++|......+ ..+
T Consensus 611 ~~L~~L~L~~s~l~~---L~~~-~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp-----~si 677 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK---LWDG-VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELP-----SSI 677 (1153)
T ss_pred cCCcEEECcCccccc---cccc-cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccc-----hhh
Confidence 566777777777665 3222 245666666666665 355544 24556666666666665433221 123
Q ss_pred hcCCccccccccc
Q 007072 233 QGCPKLEIYNSNF 245 (619)
Q Consensus 233 ~~lP~LeiLn~~~ 245 (619)
..+++|+.|+++.
T Consensus 678 ~~L~~L~~L~L~~ 690 (1153)
T PLN03210 678 QYLNKLEDLDMSR 690 (1153)
T ss_pred hccCCCCEEeCCC
Confidence 4555666555543
No 32
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=6.1e-07 Score=102.11 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=55.5
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCC-Cchh------HH
Q 007072 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL-GESA------IE 350 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l-~~~~------~~ 350 (619)
.|..|+|+||.+..+-. ..+|++|+.||++.|-|.+-+ + +.-|+.+.+|..|++++|+.. .-+. |-
T Consensus 233 ~L~~L~lrnN~l~tL~g----ie~LksL~~LDlsyNll~~hs--e-L~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl 305 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRG----IENLKSLYGLDLSYNLLSEHS--E-LEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYL 305 (1096)
T ss_pred hheeeeecccHHHhhhh----HHhhhhhhccchhHhhhhcch--h-hhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHh
Confidence 47788899999888754 458999999999999887655 2 233666778888899888752 2221 22
Q ss_pred HhhhcCccccccCccch
Q 007072 351 ILESLPTLCTLNGVTAS 367 (619)
Q Consensus 351 il~~lp~L~~LNg~~~s 367 (619)
-..+.|.=-.|+|+-+.
T Consensus 306 ~~~~a~~~f~LDgk~l~ 322 (1096)
T KOG1859|consen 306 HKNSAPVKFKLDGKALG 322 (1096)
T ss_pred ccccCCcceEecceecc
Confidence 22345555555666554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.97 E-value=6.5e-06 Score=88.75 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=98.0
Q ss_pred CceeeeecccCCCCccccccccccCCC-CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKF-PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~-p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..+..|.+.++.|.+ ++. ....+ ++|+.|++++|.|..++ ..++.+++|+.|++++|++....+. .
T Consensus 116 ~~l~~L~l~~n~i~~---i~~-~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~------~ 182 (394)
T COG4886 116 TNLTSLDLDNNNITD---IPP-LIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPKL------L 182 (394)
T ss_pred cceeEEecCCccccc---Ccc-ccccchhhcccccccccchhhhh---hhhhccccccccccCCchhhhhhhh------h
Confidence 568889999999888 332 12334 48999999999999875 5678999999999999998877632 1
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
...++|+.|+++..+- .+.|... ..+..|+.|.+++|.+..++.... ++++|..|.+.+
T Consensus 183 ~~~~~L~~L~ls~N~i--------------~~l~~~~----~~~~~L~~l~~~~N~~~~~~~~~~---~~~~l~~l~l~~ 241 (394)
T COG4886 183 SNLSNLNNLDLSGNKI--------------SDLPPEI----ELLSALEELDLSNNSIIELLSSLS---NLKNLSGLELSN 241 (394)
T ss_pred hhhhhhhheeccCCcc--------------ccCchhh----hhhhhhhhhhhcCCcceecchhhh---hcccccccccCC
Confidence 2667777776653221 1122111 134457777777776555554444 566677777777
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|++.... ..+.++++|+.|++..+.
T Consensus 242 n~~~~~~-----~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 242 NKLEDLP-----ESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred ceeeecc-----chhccccccceecccccc
Confidence 7765532 346666777777776665
No 34
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=2.6e-06 Score=88.28 Aligned_cols=108 Identities=27% Similarity=0.349 Sum_probs=78.0
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~ 258 (619)
.+.++..|++|||.|.++ .++.+|+.|++|-||-|.|....+-
T Consensus 17 dl~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~pl--------------------------------- 59 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAPL--------------------------------- 59 (388)
T ss_pred HHHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchhH---------------------------------
Confidence 456778899999999886 4778899999998888887766420
Q ss_pred cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (619)
Q Consensus 259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l 338 (619)
. .+.+|+.|-||.|.|.+++ .+..|+++|+|++|-+
T Consensus 60 ---------------~--------------------------rCtrLkElYLRkN~I~sld---EL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 60 ---------------Q--------------------------RCTRLKELYLRKNCIESLD---ELEYLKNLPSLRTLWL 95 (388)
T ss_pred ---------------H--------------------------HHHHHHHHHHHhcccccHH---HHHHHhcCchhhhHhh
Confidence 1 3344445555555555444 2556778888888877
Q ss_pred cCCCCCCc----hhHHHhhhcCccccccCccch
Q 007072 339 DIPGPLGE----SAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 339 d~p~~l~~----~~~~il~~lp~L~~LNg~~~s 367 (619)
+.|+=++. |.-+++..||||+.|+.++++
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 76654433 558999999999999999997
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.91 E-value=1.1e-06 Score=94.71 Aligned_cols=145 Identities=21% Similarity=0.213 Sum_probs=85.3
Q ss_pred eeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCc
Q 007072 158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237 (619)
Q Consensus 158 ~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~ 237 (619)
-|+..+|+|.+ .|.+ +..+..|..|++.+|++...+ +..-.|+.|+.||.+.|-+....+. ++++.+
T Consensus 141 dl~~~~N~i~s---lp~~-~~~~~~l~~l~~~~n~l~~l~---~~~i~m~~L~~ld~~~N~L~tlP~~------lg~l~~ 207 (565)
T KOG0472|consen 141 DLDATNNQISS---LPED-MVNLSKLSKLDLEGNKLKALP---ENHIAMKRLKHLDCNSNLLETLPPE------LGGLES 207 (565)
T ss_pred hhhcccccccc---CchH-HHHHHHHHHhhccccchhhCC---HHHHHHHHHHhcccchhhhhcCChh------hcchhh
Confidence 34556666666 3332 335667777788888877776 2333388888888888887776543 577788
Q ss_pred ccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCc
Q 007072 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (619)
Q Consensus 238 LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~ 317 (619)
|+.|+++..+-.. .| .+...+.|++|+.+.|.|.-+|.+..+ .+++|..||||+|++.+
T Consensus 208 L~~LyL~~Nki~~--------------lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~--~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 208 LELLYLRRNKIRF--------------LP-----EFPGCSLLKELHVGENQIEMLPAEHLK--HLNSLLVLDLRDNKLKE 266 (565)
T ss_pred hHHHHhhhccccc--------------CC-----CCCccHHHHHHHhcccHHHhhHHHHhc--ccccceeeecccccccc
Confidence 8888776322210 01 111344556666666666666665555 56666666666666665
Q ss_pred cchHHHHHHHhCCCCCccccccCC
Q 007072 318 NSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 318 i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
++ ..+..+.+|+.|++++|
T Consensus 267 ~P-----de~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 267 VP-----DEICLLRSLERLDLSNN 285 (565)
T ss_pred Cc-----hHHHHhhhhhhhcccCC
Confidence 55 12333455555555544
No 36
>PLN03150 hypothetical protein; Provisional
Probab=97.79 E-value=3.2e-05 Score=89.39 Aligned_cols=106 Identities=23% Similarity=0.330 Sum_probs=69.6
Q ss_pred CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
.++.|+|++|.|...- ...+.+|++|+.|+|++|.+....+. .+.
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP~-----~~~---------------------------- 463 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIPP-----SLG---------------------------- 463 (623)
T ss_pred EEEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCCh-----HHh----------------------------
Confidence 4788999999886432 35788999999999999987644321 011
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC-ccchHHHHHHHhC-CCCCcccccc
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE-QNSVRELLEVLKG-FPCLQSLGVD 339 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~-~i~~~~l~~~l~~-~~~L~sL~ld 339 (619)
.+.+|+.|||++|.+....+..+. +|++|+.|+|++|.+. .++ ..+.+ +.++..+.+.
T Consensus 464 -------------~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N~l~g~iP-----~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 464 -------------SITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGNSLSGRVP-----AALGGRLLHRASFNFT 523 (623)
T ss_pred -------------CCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCCcccccCC-----hHHhhccccCceEEec
Confidence 356777788888888754444444 6888888888888775 333 22222 3455566666
Q ss_pred CCC
Q 007072 340 IPG 342 (619)
Q Consensus 340 ~p~ 342 (619)
.|.
T Consensus 524 ~N~ 526 (623)
T PLN03150 524 DNA 526 (623)
T ss_pred CCc
Confidence 554
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.77 E-value=2.1e-05 Score=84.79 Aligned_cols=147 Identities=23% Similarity=0.282 Sum_probs=100.2
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.++.|++++|.|.. ++ .-...+|+|+.|++++|.|.+++ .....+++|+.|++++|.+....+. . .
T Consensus 141 nL~~L~l~~N~i~~---l~-~~~~~l~~L~~L~l~~N~l~~l~---~~~~~~~~L~~L~ls~N~i~~l~~~------~-~ 206 (394)
T COG4886 141 NLKELDLSDNKIES---LP-SPLRNLPNLKNLDLSFNDLSDLP---KLLSNLSNLNNLDLSGNKISDLPPE------I-E 206 (394)
T ss_pred hcccccccccchhh---hh-hhhhccccccccccCCchhhhhh---hhhhhhhhhhheeccCCccccCchh------h-h
Confidence 78999999999988 32 22368899999999999999987 3334899999999999999887631 1 2
Q ss_pred CCc-ccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 235 CPK-LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 235 lP~-LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.++ |+.+.++..... ..+. ....+.++..|.+++|++..++...- .+++|+.|++++|
T Consensus 207 ~~~~L~~l~~~~N~~~--------------~~~~----~~~~~~~l~~l~l~~n~~~~~~~~~~---~l~~l~~L~~s~n 265 (394)
T COG4886 207 LLSALEELDLSNNSII--------------ELLS----SLSNLKNLSGLELSNNKLEDLPESIG---NLSNLETLDLSNN 265 (394)
T ss_pred hhhhhhhhhhcCCcce--------------ecch----hhhhcccccccccCCceeeeccchhc---cccccceeccccc
Confidence 333 666655432100 0111 11235566677777777776544333 5777888888888
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.|.+++ .+..+.+|+.|+++.+.
T Consensus 266 ~i~~i~------~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 266 QISSIS------SLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccc------cccccCccCEEeccCcc
Confidence 888777 26677777777776654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=1.1e-05 Score=88.47 Aligned_cols=61 Identities=38% Similarity=0.387 Sum_probs=36.2
Q ss_pred eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
++++.+..|.|.. ..+....+.+|+.|+|.+|+|+.+.. .+..+++|++|+|++|.|....
T Consensus 74 l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i~ 134 (414)
T KOG0531|consen 74 LKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKLE 134 (414)
T ss_pred HHhhccchhhhhh----hhcccccccceeeeeccccchhhccc---chhhhhcchheecccccccccc
Confidence 3444455555544 12223456677777777777766652 1566777777777777766654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.71 E-value=4.4e-05 Score=88.32 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=72.3
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
.+..|.|++|++.. .+|. ...++++|+.|+|++|.|. .++ ..+.+|++|+.|+|++|.+....+..
T Consensus 419 ~v~~L~L~~n~L~g--~ip~-~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~------- 485 (623)
T PLN03150 419 FIDGLGLDNQGLRG--FIPN-DISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPES------- 485 (623)
T ss_pred EEEEEECCCCCccc--cCCH-HHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchH-------
Confidence 46778888888776 3333 3457888888888888876 333 46788888888888888876443211
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccc-cCcccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH-NLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~-~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
...+.+|+.|||++|.+. .+|..+.. .+.++..+++.+
T Consensus 486 ---------------------------------------l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~~~~~~l~~~~ 524 (623)
T PLN03150 486 ---------------------------------------LGQLTSLRILNLNGNSLSGRVPAALGG--RLLHRASFNFTD 524 (623)
T ss_pred ---------------------------------------HhcCCCCCEEECcCCcccccCChHHhh--ccccCceEEecC
Confidence 113667888888888887 55554332 235667788888
Q ss_pred CC
Q 007072 313 NP 314 (619)
Q Consensus 313 N~ 314 (619)
|+
T Consensus 525 N~ 526 (623)
T PLN03150 525 NA 526 (623)
T ss_pred Cc
Confidence 85
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=1.9e-05 Score=74.84 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=71.3
Q ss_pred CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
.+..|+|+.|.|..++.....+.+.-+|+..+|++|-+....+. ...
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k-----ft~---------------------------- 74 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK-----FTI---------------------------- 74 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH-----Hhh----------------------------
Confidence 34567778888887887778888888888889999976654321 111
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
..+.++.|||++|.|..+|.+ +. .+|.|+.||+|.|+|.... +.+-.+.+|-.|+...+
T Consensus 75 -------------kf~t~t~lNl~~neisdvPeE-~A--am~aLr~lNl~~N~l~~~p-----~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 75 -------------KFPTATTLNLANNEISDVPEE-LA--AMPALRSLNLRFNPLNAEP-----RVIAPLIKLDMLDSPEN 133 (177)
T ss_pred -------------ccchhhhhhcchhhhhhchHH-Hh--hhHHhhhcccccCccccch-----HHHHHHHhHHHhcCCCC
Confidence 123456777788888888877 54 6888888888888876544 33333455555554444
Q ss_pred C
Q 007072 342 G 342 (619)
Q Consensus 342 ~ 342 (619)
.
T Consensus 134 a 134 (177)
T KOG4579|consen 134 A 134 (177)
T ss_pred c
Confidence 4
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=2.3e-05 Score=85.97 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=79.2
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++.+|+|.. +.. ....+++|+.|+|++|+|+++. .+..|+.|+.|++++|++..... +
T Consensus 94 ~~~l~~l~l~~n~i~~---i~~-~l~~~~~L~~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~~~-------~ 158 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK---IEN-LLSSLVNLQVLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDISG-------L 158 (414)
T ss_pred ccceeeeeccccchhh---ccc-chhhhhcchheecccccccccc----chhhccchhhheeccCcchhccC-------C
Confidence 4889999999999888 221 1567999999999999999986 66788889999999999988761 1
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
+ .+.+|+.++|++|.|..+.+. + ...+.+|+.|.+.+
T Consensus 159 ~-----------------------------------------~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 159 E-----------------------------------------SLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGG 195 (414)
T ss_pred c-----------------------------------------cchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccC
Confidence 1 145566666666666666542 1 12556666666666
Q ss_pred CCCCccc
Q 007072 313 NPLEQNS 319 (619)
Q Consensus 313 N~i~~i~ 319 (619)
|.|..+.
T Consensus 196 n~i~~i~ 202 (414)
T KOG0531|consen 196 NSIREIE 202 (414)
T ss_pred Cchhccc
Confidence 6665555
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6e-05 Score=57.38 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=32.7
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
|+|+.|+|++|+|++++ +.+.+|++|+.|+|++|++....
T Consensus 1 ~~L~~L~l~~N~i~~l~---~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP---PELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHG---GHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccC---chHhCCCCCCEEEecCCCCCCCc
Confidence 57899999999999887 35899999999999999988654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=1.1e-05 Score=84.58 Aligned_cols=161 Identities=23% Similarity=0.281 Sum_probs=111.6
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+||...|....+ ..+-+.|.+|+.|+|.|+.|.+ .++..+.+=.+|+.|||+++.=... .-+..+++
T Consensus 185 sRlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTE---NALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccch---hHHHHHHH
Confidence 346778899988887322 2234689999999999999986 4678899999999999999862222 23567889
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC-CCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS-PAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~-~~~L~~L~~LnLs~ 312 (619)
.|..|..||++.+...++..-.- -.+.-+.|+.|||||+.-.--.+.+-. -...|+|.+||||+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~---------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVA---------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHH---------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 99999999998766554221000 011345788888888764322121100 12688899999998
Q ss_pred CCCCccchHHHHHHHhCCCCCcccccc
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld 339 (619)
|..-.- +..+.|.+|+.|++|.+.
T Consensus 323 ~v~l~~---~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 323 SVMLKN---DCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ccccCc---hHHHHHHhcchheeeehh
Confidence 865433 457788888999988875
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=9.6e-06 Score=92.66 Aligned_cols=111 Identities=26% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~ 258 (619)
-+|-|++|||++||+..++ .+++|++||.|||+.|.+....- | -..+|. |.+|+++..-..+
T Consensus 185 ll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~--l---~~~gc~-L~~L~lrnN~l~t-------- 246 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQ--L---SMVGCK-LQLLNLRNNALTT-------- 246 (1096)
T ss_pred HHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccc--c---chhhhh-heeeeecccHHHh--------
Confidence 4577888888888888753 78888888888888888765441 1 123344 6666665311110
Q ss_pred cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccc
Q 007072 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS 319 (619)
Q Consensus 259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~ 319 (619)
-. +...|.+|..||||+|.|.....-.| ...|.+|+.|+|-||++.=-+
T Consensus 247 -------L~----gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 247 -------LR----GIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred -------hh----hHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCccccCH
Confidence 01 12247788888888888886655222 125778888888888885444
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=5.5e-05 Score=57.61 Aligned_cols=39 Identities=36% Similarity=0.560 Sum_probs=33.2
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccc
Q 007072 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS 319 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~ 319 (619)
+|+.|+|++|+|..+|+.+. +|++|+.|++++|+|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~---~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELS---NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGT---TCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHh---CCCCCCEEEecCCCCCCCc
Confidence 68999999999999988544 8999999999999999876
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.42 E-value=0.00011 Score=87.96 Aligned_cols=149 Identities=27% Similarity=0.259 Sum_probs=100.8
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCc--ccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK--LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk--L~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.+-+|.|.. ...+.++|+|++|-+.+|. +..+. ...+..||.|++||||+|.-....
T Consensus 524 ~~rr~s~~~~~~~~-----~~~~~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~L--------- 587 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-----IAGSSENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKL--------- 587 (889)
T ss_pred heeEEEEeccchhh-----ccCCCCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcC---------
Confidence 44555566666544 3345688899999999996 55544 667999999999999997633332
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
|..+. .|-+|++|||++..|..||.++- +|+.|.+||+..
T Consensus 588 ---------------------------------P~~I~----~Li~LryL~L~~t~I~~LP~~l~---~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 588 ---------------------------------PSSIG----ELVHLRYLDLSDTGISHLPSGLG---NLKKLIYLNLEV 627 (889)
T ss_pred ---------------------------------ChHHh----hhhhhhcccccCCCccccchHHH---HHHhhheecccc
Confidence 22222 37788999999999999988766 688999999988
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCC-CCCchhHHHhhhcCccccccC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG-PLGESAIEILESLPTLCTLNG 363 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~-~l~~~~~~il~~lp~L~~LNg 363 (619)
+...... ...+..+++|+.|.+-... ..+....+.+..+.+|+.+..
T Consensus 628 ~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 628 TGRLESI----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccccc----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8643322 4566778888888875443 222222444455555555544
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=6e-05 Score=71.48 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~ 222 (619)
..|+..+|++|.+.+++ .+...+++.+++|||++|.+...
T Consensus 53 ~el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~neisdv 92 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEISDV 92 (177)
T ss_pred ceEEEEecccchhhhCC--HHHhhccchhhhhhcchhhhhhc
Confidence 34444555555555554 33444445555555555554433
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00012 Score=73.19 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=47.7
Q ss_pred CCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhh
Q 007072 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILE 353 (619)
Q Consensus 276 L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~ 353 (619)
++.|..|.|++|+|.++.+..-. -+|+|+.|-|.+|.|..+. + ..-+..||+|++|.+-.|+. ...|.+-++-
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~--d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELG--D-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred ccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhh--h-cchhccCCccceeeecCCchhcccCceeEEEE
Confidence 33444444444444444443222 3555566666666555443 1 22356677777776554442 2334466777
Q ss_pred hcCccccccCccch
Q 007072 354 SLPTLCTLNGVTAS 367 (619)
Q Consensus 354 ~lp~L~~LNg~~~s 367 (619)
.+|+|+.|+...+.
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 88888887666664
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=8.2e-05 Score=77.48 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
|-.++.|.||-|.|.. +.| ...|++|..|-|..|.|++++++ ..|.+||+|++|||-.||-+.....+.-...+
T Consensus 40 Mp~lEVLsLSvNkIss--L~p---l~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS--LAP---LQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred cccceeEEeecccccc--chh---HHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 7889999999999988 444 57999999999999999999975 69999999999999999988766556666788
Q ss_pred hcCCccccccc
Q 007072 233 QGCPKLEIYNS 243 (619)
Q Consensus 233 ~~lP~LeiLn~ 243 (619)
+.||+|+.|+.
T Consensus 114 R~LPnLkKLDn 124 (388)
T KOG2123|consen 114 RVLPNLKKLDN 124 (388)
T ss_pred HHcccchhccC
Confidence 99999998875
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.18 E-value=0.00036 Score=74.49 Aligned_cols=201 Identities=20% Similarity=0.185 Sum_probs=134.6
Q ss_pred CCCceeeeecccCCCCcc--ccccccccCCCCCccEeecCCCcc----cchh----hHHHHHhcccccceeecCCCcccc
Q 007072 152 GDGTVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL----ETVE----IIVQEVTKLKNLRALWLNNNPVLK 221 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~--~li~l~l~~~~p~L~~L~Ls~NkL----~~~~----~v~~~l~~L~~Lk~L~Ls~Npi~~ 221 (619)
-++.++.|+||+|-|... .-+...+ ...++|+..+|+.--. ..++ -.+++|-++++|+.||||+|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 368899999999998872 1111122 2345888888776522 2222 234567779999999999999998
Q ss_pred cccchhhhHHhhcCCccccccccccccc--ccc----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-
Q 007072 222 KCDHCMEDAILQGCPKLEIYNSNFTINF--GEW----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN- 294 (619)
Q Consensus 222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~--~~~----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~- 294 (619)
...+++. ..++.+-+|+-|.++..+-- +.- +|-=|+ +....| ....|+.+....|++.+-+.
T Consensus 107 ~g~~~l~-~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~~--------~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLE-ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKAA--------SKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHH-HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhccC--------CCcceEEEEeeccccccccHH
Confidence 7765553 45566899998777654321 000 011111 111111 34578999999999987776
Q ss_pred ---cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh---HHHhhhcCccccccCccc
Q 007072 295 ---KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLCTLNGVTA 366 (619)
Q Consensus 295 ---~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~---~~il~~lp~L~~LNg~~~ 366 (619)
..|. ..|.|+.+.+..|.|..-.+--+...+.+||.|+-|++..|.+=..-+ .+.+..+|+|++||-.|-
T Consensus 176 ~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 176 ALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3565 568999999999999887775567779999999999998887522211 566677777888766554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00022 Score=73.51 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=47.0
Q ss_pred CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhhcCccccccCccchh
Q 007072 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILESLPTLCTLNGVTASK 368 (619)
Q Consensus 301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~lp~L~~LNg~~~s~ 368 (619)
++|+|++|++++|.|..++. ..-+..+++|.+|.+-.... +..|.-+++..+|+|..|+|.++..
T Consensus 89 ~~P~l~~l~ls~Nki~~lst---l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLST---LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hCCceeEEeecCCccccccc---cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 45788888888887776552 22356667777777654433 5566689999999999999999874
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00041 Score=81.22 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~ 260 (619)
.+|+.|+++|...-+-.-+...=..||+|++|.++|=.+..-. .-.+..+||+|..|+.+.|+-..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~TnI~n---------- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISGTNISN---------- 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCCCCccC----------
Confidence 4556666666533333222333344566666665554332221 12334556666666555544321
Q ss_pred cCCCCCCccccCCCcCCcccccccCccccccCcc--cccCCCCCCCCcccccCCCCCCccc--hHHHHHHHhCCCCCccc
Q 007072 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN--KAFSPAEMPSLSHLNIRGNPLEQNS--VRELLEVLKGFPCLQSL 336 (619)
Q Consensus 261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~--~~f~~~~L~~L~~LnLs~N~i~~i~--~~~l~~~l~~~~~L~sL 336 (619)
-. +-+.|.+|+.|-+.+=.+..-.. ..| +|++|+.||+|...-.... +.....--..+|.|+.|
T Consensus 188 -----l~----GIS~LknLq~L~mrnLe~e~~~~l~~LF---~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 188 -----LS----GISRLKNLQVLSMRNLEFESYQDLIDLF---NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred -----cH----HHhccccHHHHhccCCCCCchhhHHHHh---cccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 01 11134555555554444443322 344 4666666666655544333 22222334445666666
Q ss_pred cccCCCCCCchhHHHhhhcCcccccc
Q 007072 337 GVDIPGPLGESAIEILESLPTLCTLN 362 (619)
Q Consensus 337 ~ld~p~~l~~~~~~il~~lp~L~~LN 362 (619)
++++.-.-...-..++..=|+|+.+.
T Consensus 256 DcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 256 DCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ecCCcchhHHHHHHHHHhCccHhhhh
Confidence 66543211111144444555555554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00066 Score=79.53 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=121.0
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
.+++.|+++|...-. .--+-.+...||.|++|.++|=.+..-+ -.+....+|+|..||+|+..+.... ..+
T Consensus 122 ~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~-------GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLS-------GIS 192 (699)
T ss_pred HhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcH-------HHh
Confidence 568888888866222 1233345579999999999998887665 6789999999999999999999774 367
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc------cccCCCCCCCCcc
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN------KAFSPAEMPSLSH 307 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~------~~f~~~~L~~L~~ 307 (619)
.+.+|++|.+..-. |+. -..+. ..-.|.+|+.||+|...-..-+. +... .||+|+.
T Consensus 193 ~LknLq~L~mrnLe--------~e~-------~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~--~LpeLrf 254 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE--------FES-------YQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM--VLPELRF 254 (699)
T ss_pred ccccHHHHhccCCC--------CCc-------hhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcc--cCccccE
Confidence 89999988775311 111 01111 11148899999999887766552 2223 6999999
Q ss_pred cccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccCccchhhhccCcc
Q 007072 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKH 375 (619)
Q Consensus 308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s~~~~~~~~ 375 (619)
||+||+.+...-. ..++..=|+|+.+..-.- ........+..+.+|.....+++..-+|
T Consensus 255 LDcSgTdi~~~~l---e~ll~sH~~L~~i~~~~~------~~~~~~~~~~i~~ln~at~~s~i~~L~~ 313 (699)
T KOG3665|consen 255 LDCSGTDINEEIL---EELLNSHPNLQQIAALDC------LALSAVSSTEIRVLNTATLDSSIQALTY 313 (699)
T ss_pred EecCCcchhHHHH---HHHHHhCccHhhhhhhhh------hccccccccCceeeeecchhHHHHHHHH
Confidence 9999998876443 334455566666542100 0011123345566666666665433333
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.88 E-value=6.2e-05 Score=84.41 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=80.4
Q ss_pred hhhcccccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 144 EIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 144 ~~~~~~~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
+|..++ -+-......+|+.|.... +|-. +..|-.|+.|.|..|.|..++ ..+..|..|..||||-|.++...
T Consensus 66 pr~a~~-~~ltdt~~aDlsrNR~~e---lp~~-~~~f~~Le~liLy~n~~r~ip---~~i~~L~~lt~l~ls~NqlS~lp 137 (722)
T KOG0532|consen 66 PRGAAS-YDLTDTVFADLSRNRFSE---LPEE-ACAFVSLESLILYHNCIRTIP---EAICNLEALTFLDLSSNQLSHLP 137 (722)
T ss_pred CCcccc-ccccchhhhhcccccccc---CchH-HHHHHHHHHHHHHhccceecc---hhhhhhhHHHHhhhccchhhcCC
Confidence 333333 333444445555555444 2211 233444555555566555554 34455666666677776666543
Q ss_pred cchhhhHHhhcCCcccccccccccccccccc-------cccccccCCCCCCccccCCCcCCcccccccCccccccCcccc
Q 007072 224 DHCMEDAILQGCPKLEIYNSNFTINFGEWAL-------GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA 296 (619)
Q Consensus 224 ~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l-------~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~ 296 (619)
.+ .-.-.|+-|.+-|.+.|....++++ -++.+.+ +..|.. ...|.+|+.|+++.|++..+|.+.
T Consensus 138 ~~----lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq----l~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 138 DG----LCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ----LGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred hh----hhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHH----hhhHHHHHHHHHhhhhhhhCCHHH
Confidence 21 0011233333334343333222210 0111110 011111 112344444555555555554443
Q ss_pred cCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 297 FSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 297 f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
. +|| |.+||.|.|+|..++ --|-++..|+.|-++.|+.
T Consensus 209 ~---~Lp-Li~lDfScNkis~iP-----v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 209 C---SLP-LIRLDFSCNKISYLP-----VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred h---CCc-eeeeecccCceeecc-----hhhhhhhhheeeeeccCCC
Confidence 3 233 555555555555544 3577888899998887763
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.79 E-value=0.00057 Score=68.45 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...++||.+.+|.|.. |.+++...+|+|..|.|.+|.|..+.++ .-+..+|+|+.|-|-+||+++.. +.-...
T Consensus 62 ~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~--~YR~yv 135 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKK--NYRLYV 135 (233)
T ss_pred CccccceEEecCCccee---eccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhccc--CceeEE
Confidence 45789999999999999 8889999999999999999999988754 57888999999999999999876 233345
Q ss_pred hhcCCcccccccc
Q 007072 232 LQGCPKLEIYNSN 244 (619)
Q Consensus 232 l~~lP~LeiLn~~ 244 (619)
+..+|+|++|+..
T Consensus 136 l~klp~l~~LDF~ 148 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQ 148 (233)
T ss_pred EEecCcceEeehh
Confidence 6779999999874
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0014 Score=69.08 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=53.0
Q ss_pred ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccc
Q 007072 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT 246 (619)
Q Consensus 183 L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T 246 (619)
+.-|.|.++.|-+...+...=....+++.|||.+|.|+.+. + +-.|+.++|.|+.||++-.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs--e-I~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS--E-IGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH--H-HHHHHhcCccceEeeccCC
Confidence 44577889999999988888899999999999999999987 2 3578999999999999743
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0011 Score=68.51 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=68.9
Q ss_pred cCCCceeeeecccC--CCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhh
Q 007072 151 KGDGTVKWLELEDA--DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCME 228 (619)
Q Consensus 151 ~g~~~l~~L~Ls~~--~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~ 228 (619)
--..+|+.|++|.| .|...+.+ +..++|+|+.|+|++|+|..+. ....+..+++|..|+|.+|+..... ..-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~Nki~~ls-tl~pl~~l~nL~~Ldl~n~~~~~l~--dyr 135 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSGNKIKDLS-TLRPLKELENLKSLDLFNCSVTNLD--DYR 135 (260)
T ss_pred CCcchhhhhcccCCccccccccee---hhhhCCceeEEeecCCcccccc-ccchhhhhcchhhhhcccCCccccc--cHH
Confidence 33468899999999 55553332 3457799999999999998765 3457889999999999999998855 244
Q ss_pred hHHhhcCCcccccccc
Q 007072 229 DAILQGCPKLEIYNSN 244 (619)
Q Consensus 229 ~~il~~lP~LeiLn~~ 244 (619)
..++.-+|+|.+|+-.
T Consensus 136 e~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHHhhhhcccccc
Confidence 6788999999998843
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.59 E-value=0.00056 Score=77.00 Aligned_cols=130 Identities=24% Similarity=0.276 Sum_probs=87.0
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+..|+|+.|++.. .|..+.. --|..|-+++|+|..+++. +..+.+|..|+.+.|.+....++ +.
T Consensus 121 ~~lt~l~ls~NqlS~---lp~~lC~--lpLkvli~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsq------l~ 186 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSH---LPDGLCD--LPLKVLIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQ------LG 186 (722)
T ss_pred hHHHHhhhccchhhc---CChhhhc--CcceeEEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHH------hh
Confidence 345567777777666 4433322 2366777888888887743 34777888888888877766543 56
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
++-+|..|++..... .+.|-.+. -=.|..||+|+|+|..||-++- .|+.|+.|-|-+|
T Consensus 187 ~l~slr~l~vrRn~l--------------~~lp~El~-----~LpLi~lDfScNkis~iPv~fr---~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHL--------------EDLPEELC-----SLPLIRLDFSCNKISYLPVDFR---KMRHLQVLQLENN 244 (722)
T ss_pred hHHHHHHHHHhhhhh--------------hhCCHHHh-----CCceeeeecccCceeecchhhh---hhhhheeeeeccC
Confidence 666777666542111 11221111 1147899999999999987655 7999999999999
Q ss_pred CCCccc
Q 007072 314 PLEQNS 319 (619)
Q Consensus 314 ~i~~i~ 319 (619)
++.+=+
T Consensus 245 PLqSPP 250 (722)
T KOG0532|consen 245 PLQSPP 250 (722)
T ss_pred CCCCCh
Confidence 998766
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.50 E-value=0.0033 Score=67.35 Aligned_cols=176 Identities=25% Similarity=0.277 Sum_probs=125.5
Q ss_pred CCCCccEeecCCCcc--cchhhHHHHHhcccccceeecCCCccccccc-----chhhhHHhhcCCccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNNNPVLKKCD-----HCMEDAILQGCPKLEIYNSNFTINFGE 251 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL--~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~-----~~~~~~il~~lP~LeiLn~~~T~n~~~ 251 (619)
....++.|+|+||-+ +-...++..+.+.++|+.-++|+=.-...-. -.+.-..+-.+|.|+++|+| .|+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS--DNA-- 103 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS--DNA-- 103 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc--ccc--
Confidence 456889999999954 4566778889999999999988654333221 12333556778999999987 232
Q ss_pred ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccc-----c------CCCCCCCCcccccCCCCCCccch
Q 007072 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA-----F------SPAEMPSLSHLNIRGNPLEQNSV 320 (619)
Q Consensus 252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~-----f------~~~~L~~L~~LnLs~N~i~~i~~ 320 (619)
++.+.+..+........+|+.|-|.||.|...-.+. | +..+=+.|+.+.+..|.+.+-+.
T Consensus 104 ---------~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 104 ---------FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ---------cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 333334444333445778999999999998554432 1 11245889999999999999887
Q ss_pred HHHHHHHhCCCCCccccccCCCCCCch--h-HHHhhhcCccccccCccch
Q 007072 321 RELLEVLKGFPCLQSLGVDIPGPLGES--A-IEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 321 ~~l~~~l~~~~~L~sL~ld~p~~l~~~--~-~~il~~lp~L~~LNg~~~s 367 (619)
-.+...+..++.|+.+.+..|+....- . ..-++.||+|+.||=.|-.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 777888999999999999988753221 1 5567889999999777654
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0011 Score=69.81 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=110.6
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~ 260 (619)
..|+.|||+.-.|+-- ..-..++.+.+||.|-|.||.+..-- . +-...=.+|+.+|++.++-.++.++.
T Consensus 185 sRlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I----~-~~iAkN~~L~~lnlsm~sG~t~n~~~----- 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPI----V-NTIAKNSNLVRLNLSMCSGFTENALQ----- 253 (419)
T ss_pred hhhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHH----H-HHHhccccceeeccccccccchhHHH-----
Confidence 3588999999888743 34568999999999999999976431 2 22334468888998877655543321
Q ss_pred cCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (619)
Q Consensus 261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~ 340 (619)
.....+..|.+||||-|.+..-.-.+.-..=-++|.+|||+|..- .+..+++.-+..+||+|..|++..
T Consensus 254 ----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 254 ----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeecccc
Confidence 111236688899999998763221111111358899999999842 122235566788999999999999
Q ss_pred CCCCCchhHHHhhhcCccccc
Q 007072 341 PGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 341 p~~l~~~~~~il~~lp~L~~L 361 (619)
...+++.-..++..++-|+.|
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred ccccCchHHHHHHhcchheee
Confidence 998888557888888888776
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.98 E-value=0.01 Score=65.59 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=39.0
Q ss_pred CceeeeecccCCCCccccccccccCCCC-CccEeecCCC-cccchhhHHHHHhcccccceeecCCCc
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFP-DLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNP 218 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p-~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Np 218 (619)
..+.+|++++|.|.. +| .+| +|+.|.+++| .|+.++.. + .++|+.|+|++|+
T Consensus 52 ~~l~~L~Is~c~L~s---LP-----~LP~sLtsL~Lsnc~nLtsLP~~---L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 52 RASGRLYIKDCDIES---LP-----VLPNELTEITIENCNNLTTLPGS---I--PEGLEKLTVCHCP 105 (426)
T ss_pred cCCCEEEeCCCCCcc---cC-----CCCCCCcEEEccCCCCcccCCch---h--hhhhhheEccCcc
Confidence 457799999999888 44 243 6999999885 77777632 2 2589999999984
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.77 E-value=0.0047 Score=74.29 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=69.2
Q ss_pred ceeeeecccCC--CCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 155 TVKWLELEDAD--IGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 155 ~l~~L~Ls~~~--I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
++.+|-+..|. +.. ++...+..+|.|..|||++| .+..+| ..++.|-+||.|+|++..+.....+
T Consensus 546 ~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~I~~LP~~------ 613 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTGISHLPSG------ 613 (889)
T ss_pred ccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCCccccchH------
Confidence 57888888886 555 78888899999999999999 778776 6788999999999999999876543
Q ss_pred hhcCCccccccccccccc
Q 007072 232 LQGCPKLEIYNSNFTINF 249 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~ 249 (619)
++.|-.|..||+.+|+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred HHHHHhhheecccccccc
Confidence 677778888998887764
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.54 E-value=0.015 Score=63.28 Aligned_cols=81 Identities=25% Similarity=0.176 Sum_probs=48.6
Q ss_pred ccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccc
Q 007072 172 LSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFG 250 (619)
Q Consensus 172 i~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~ 250 (619)
+...+...+|+|+.|.++++ .+.... .....+.+++|+.|+|+++.................+++|+.++++.+.+.+
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHhhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 33444456888888888888 665533 4578888888888888874211111111223355566667666666655544
Q ss_pred ccc
Q 007072 251 EWA 253 (619)
Q Consensus 251 ~~~ 253 (619)
+.+
T Consensus 258 d~~ 260 (482)
T KOG1947|consen 258 DIG 260 (482)
T ss_pred chh
Confidence 333
No 64
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.34 E-value=0.015 Score=65.67 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=36.3
Q ss_pred CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCC
Q 007072 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217 (619)
Q Consensus 178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~N 217 (619)
.++|.+.+|+|+.|+|.+++-++..-..-|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3889999999999999999988888888999999999988
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.24 E-value=0.022 Score=51.07 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=47.4
Q ss_pred cccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccc
Q 007072 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEW 252 (619)
Q Consensus 173 ~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~ 252 (619)
+...+.++++|+.+.+.. .+..++ ...+.++++|+.+.+.++ +.... ...+..+++|+.+.+.. ....+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~-~~~i~-----~~~F~~~~~l~~i~~~~--~~~~i 72 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNN-LTSIG-----DNAFSNCKSLESITFPN--NLKSI 72 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE---TTTTTT-TT-SEEEESST-TSCE------TTTTTT-TT-EEEEETS--TT-EE
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeC--hhhccccccccccccccc-ccccc-----eeeeecccccccccccc--ccccc
Confidence 344555666666666653 344444 345666666666666654 33332 22344454454444321 00000
Q ss_pred cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCC
Q 007072 253 ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332 (619)
Q Consensus 253 ~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~ 332 (619)
+ ...+....+|+.+++..+ +..++...|. +. +|+.+.+.+ .+..+. ...|.+|++
T Consensus 73 -------------~---~~~F~~~~~l~~i~~~~~-~~~i~~~~f~--~~-~l~~i~~~~-~~~~i~----~~~F~~~~~ 127 (129)
T PF13306_consen 73 -------------G---DNAFSNCTNLKNIDIPSN-ITEIGSSSFS--NC-NLKEINIPS-NITKIE----ENAFKNCTK 127 (129)
T ss_dssp -----------------TTTTTT-TTECEEEETTT--BEEHTTTTT--T--T--EEE-TT-B-SS--------GGG----
T ss_pred -------------c---cccccccccccccccCcc-ccEEchhhhc--CC-CceEEEECC-CccEEC----Ccccccccc
Confidence 0 000112456666676654 6677777775 55 667777664 444444 344566655
Q ss_pred C
Q 007072 333 L 333 (619)
Q Consensus 333 L 333 (619)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 5
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.13 E-value=0.043 Score=57.64 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=45.1
Q ss_pred cccccccCccccccCccc----ccCCCCCCCCcccccCCCCCCccchHHHHHH-HhCCCCCccccccCCCCCC-chh--H
Q 007072 278 SVTSLDLSNRCIHNLVNK----AFSPAEMPSLSHLNIRGNPLEQNSVRELLEV-LKGFPCLQSLGVDIPGPLG-ESA--I 349 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~----~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~-l~~~~~L~sL~ld~p~~l~-~~~--~ 349 (619)
.|+..+...|++.+-|.. .|. .=.+|+.+.+-.|.|..-.+..|..+ +..+.+|+-|++..|.+-. .+. .
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~--sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLE--SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHH--hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 455666666666655442 221 11466666677776665543333222 5566677777776665411 111 4
Q ss_pred HHhhhcCccccccC
Q 007072 350 EILESLPTLCTLNG 363 (619)
Q Consensus 350 ~il~~lp~L~~LNg 363 (619)
+.+..+++|++|+-
T Consensus 236 ~al~~W~~lrEL~l 249 (388)
T COG5238 236 DALCEWNLLRELRL 249 (388)
T ss_pred HHhcccchhhhccc
Confidence 55566666777643
No 67
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=94.99 E-value=0.025 Score=49.49 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=36.8
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccc
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~ 479 (619)
-+++-|+||-.||+++..... .+ ...-.++-++||++|||+|-||
T Consensus 72 ~~~~~iNHsc~pN~~~~~~~~--~~-----~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 72 NIARFINHSCEPNCELLFVEV--NG-----DSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred cHHHeeCCCCCCCEEEEEEEE--CC-----CcEEEEEECCCcCCCCEEeecC
Confidence 488999999999999865433 33 3467888899999999999987
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.52 E-value=0.023 Score=50.96 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=49.6
Q ss_pred HHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccc
Q 007072 202 EVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS 281 (619)
Q Consensus 202 ~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~ 281 (619)
++.++++|+.+.+.++ +.... ...+.++++|+.+.+.- +...+. . ..+..+.+|+.
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~I~-----~~~F~~~~~l~~i~~~~--~~~~i~-----~-----------~~F~~~~~l~~ 62 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKKIG-----ENAFSNCTSLKSINFPN--NLTSIG-----D-----------NAFSNCKSLES 62 (129)
T ss_dssp TTTT-TT--EEEETST---EE------TTTTTT-TT-SEEEESS--TTSCE------T-----------TTTTT-TT-EE
T ss_pred HHhCCCCCCEEEECCC-eeEeC-----hhhcccccccccccccc--cccccc-----e-----------eeeeccccccc
Confidence 5677888999888753 44443 33466666676555432 111000 0 01123446777
Q ss_pred cccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcccccc
Q 007072 282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (619)
Q Consensus 282 LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld 339 (619)
+.+.+ .+..++...|. .+++|+.+.+..| +..+. ...+.++ .|+.+.+.
T Consensus 63 i~~~~-~~~~i~~~~F~--~~~~l~~i~~~~~-~~~i~----~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 63 ITFPN-NLKSIGDNAFS--NCTNLKNIDIPSN-ITEIG----SSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETS-TT-EE-TTTTT--T-TTECEEEETTT--BEEH----TTTTTT--T--EEE-T
T ss_pred ccccc-ccccccccccc--ccccccccccCcc-ccEEc----hhhhcCC-CceEEEEC
Confidence 77765 67777777776 6778888888665 55555 3346666 66666543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.50 E-value=0.024 Score=61.64 Aligned_cols=165 Identities=24% Similarity=0.256 Sum_probs=80.5
Q ss_pred CCceeeeecccC--CCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCCCc-ccccccchhh
Q 007072 153 DGTVKWLELEDA--DIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCME 228 (619)
Q Consensus 153 ~~~l~~L~Ls~~--~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~Np-i~~~~~~~~~ 228 (619)
...++.|+++++ .+.....-...+...+++|+.|+|+++. +++.. +.....++++|+.|.+++++ +... ..
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l~~~c~~L~~L~l~~c~~lt~~----gl 287 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSALASRCPNLETLSLSNCSNLTDE----GL 287 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHHHhhCCCcceEccCCCCccchh----HH
Confidence 345666666652 2232211222345566777777777776 44443 33344456777777766666 3322 24
Q ss_pred hHHhhcCCccccccccccccccccc----ccccccccCCCCCCcccc-CCCcCCcccccccCcccc---ccCcccccCCC
Q 007072 229 DAILQGCPKLEIYNSNFTINFGEWA----LGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCI---HNLVNKAFSPA 300 (619)
Q Consensus 229 ~~il~~lP~LeiLn~~~T~n~~~~~----l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I---~~Lp~~~f~~~ 300 (619)
..+...+|+|+.|+++.....++-+ +.+|.+.-. +.. .......++.+.+++... ..+......
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~------l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~-- 359 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE------LKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILR-- 359 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh------hhhhhcCCCccHHHHHHHHhhccCchhHhHHHHh--
Confidence 5666667777777766444432211 122321100 000 000122344444444333 122222222
Q ss_pred CCCCCcccccCCCCCCccchHHHHHHHhCCCCC
Q 007072 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333 (619)
Q Consensus 301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L 333 (619)
.++.|+.+.|..+.+.+.. +...+.+|+.|
T Consensus 360 ~~~~l~~~~l~~~~~~~~~---~~~~l~gc~~l 389 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCGISDLG---LELSLRGCPNL 389 (482)
T ss_pred cCCCcchhhhhhhhccCcc---hHHHhcCCccc
Confidence 6777778887777744433 13456777777
No 70
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.54 E-value=0.046 Score=61.84 Aligned_cols=88 Identities=27% Similarity=0.246 Sum_probs=67.0
Q ss_pred ccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCC--cccchhhHHHHHhc--ccccceeecCCCcccccc--
Q 007072 150 EKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN--KLETVEIIVQEVTK--LKNLRALWLNNNPVLKKC-- 223 (619)
Q Consensus 150 ~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N--kL~~~~~v~~~l~~--L~~Lk~L~Ls~Npi~~~~-- 223 (619)
+.....+..+.|++|++..-.-. ..++...|+|..|+|++| ++.+.. .+++ ..-|+.|+|-|||++...
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~-sslsq~apklk~L~LS~N~~~~~~~~----el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDAL-SSLSQIAPKLKTLDLSHNHSKISSES----ELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred hcCCcceeeeecccchhhchhhh-hHHHHhcchhheeecccchhhhcchh----hhhhhcCCCHHHeeecCCccccchhh
Confidence 34467888899999998871111 125679999999999999 777765 4444 445789999999999855
Q ss_pred cchhhhHHhhcCCcccccc
Q 007072 224 DHCMEDAILQGCPKLEIYN 242 (619)
Q Consensus 224 ~~~~~~~il~~lP~LeiLn 242 (619)
..+....|...||.|-.|+
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 2267778899999999887
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.29 E-value=0.089 Score=58.37 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.2
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcc-cccceeecCCCcc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKL-KNLRALWLNNNPV 219 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L-~~Lk~L~Ls~Npi 219 (619)
.|+++..|++++|.|+.+| .+ ++|+.|.++++.-
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-------~LP~sLtsL~Lsnc~n 84 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-------VLPNELTEITIENCNN 84 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-------CCCCCCcEEEccCCCC
Confidence 3578889999999888886 23 3699999987653
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.73 E-value=0.067 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.1
Q ss_pred cccccccCccccccCccc
Q 007072 278 SVTSLDLSNRCIHNLVNK 295 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~ 295 (619)
+|+.||||+|+|+.+|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 478899999999988876
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.48 E-value=0.049 Score=59.91 Aligned_cols=87 Identities=28% Similarity=0.397 Sum_probs=61.6
Q ss_pred CceeeeecccCC-CCccccccccc-cCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 154 GTVKWLELEDAD-IGDDMLLSLNL-SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 154 ~~l~~L~Ls~~~-I~~~~li~l~l-~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+.++.|.+.++. +.+ -++-. .++||+|+.|++.+++.-+-...-.+-+.+++|+.|+|-.++...- ...+++
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~---~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD---VSLKYL 211 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH---HHHHHH
Confidence 788889999988 555 34433 3689999999999994333333344667789999999988664432 245667
Q ss_pred hhcCCcccccccccc
Q 007072 232 LQGCPKLEIYNSNFT 246 (619)
Q Consensus 232 l~~lP~LeiLn~~~T 246 (619)
-++||+|+-+|++..
T Consensus 212 a~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWC 226 (483)
T ss_pred HHhhhhHHHhhhccC
Confidence 788999988888653
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.40 E-value=0.13 Score=34.33 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.9
Q ss_pred CCcccccccCccccccCcccccC
Q 007072 276 LQSVTSLDLSNRCIHNLVNKAFS 298 (619)
Q Consensus 276 L~~L~~LdLS~N~I~~Lp~~~f~ 298 (619)
|.+|+.|+|++|.|..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35678888888888888887774
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.40 E-value=0.13 Score=34.33 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.9
Q ss_pred CCcccccccCccccccCcccccC
Q 007072 276 LQSVTSLDLSNRCIHNLVNKAFS 298 (619)
Q Consensus 276 L~~L~~LdLS~N~I~~Lp~~~f~ 298 (619)
|.+|+.|+|++|.|..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35678888888888888887774
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=0.14 Score=51.73 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=49.6
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
++.+++|+.+.+++.+...+|+|.+-++ -.++|+.|+|+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-----------------------------------------~~~~L~~L~ls 159 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-----------------------------------------LAPSLQDLDLS 159 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-----------------------------------------cccchheeecc
Confidence 4455556666666666677777777663 23455555555
Q ss_pred CC-CCCccchHHHHHHHhCCCCCccccccCCCC---CCchhHHHhhhcCccc
Q 007072 312 GN-PLEQNSVRELLEVLKGFPCLQSLGVDIPGP---LGESAIEILESLPTLC 359 (619)
Q Consensus 312 ~N-~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~---l~~~~~~il~~lp~L~ 359 (619)
+| .|.+-. ...|..|++|+-|.+..... ++.....+-+.||++.
T Consensus 160 gC~rIT~~G----L~~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 160 GCPRITDGG----LACLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred CCCeechhH----HHHHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 55 333322 44577778888887765544 3334467777788774
No 77
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=0.45 Score=52.60 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=43.5
Q ss_pred eEEEEecC-CCC--CCC--------CeEeeccceeccchHHHHhhh-----cCcchHHHHHhhhccc
Q 007072 61 RRLVLDSQ-SMP--KES--------NVFLVDHAWTFRLSDAFSQLQ-----EVPGLAQRMASLMCVD 111 (619)
Q Consensus 61 ~~~vv~~~-~l~--~~~--------~vflidh~~tf~~~~a~~~L~-----~vp~L~~Rm~~lm~~~ 111 (619)
+++.+++| ..+ -|+ +||.|||+||-+...++.+|+ ++++++-||++||+++
T Consensus 81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~~le~~v~~e~~e~l~~~s~l~G~~ 147 (631)
T KOG2155|consen 81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVEKLETSVEKEEAEHLKKISSLTGNL 147 (631)
T ss_pred eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHHHhhccchhhHHHHHHHHHHhhCCC
Confidence 56677777 444 244 599999999999999999999 9999999999999976
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.62 E-value=0.23 Score=54.78 Aligned_cols=183 Identities=18% Similarity=0.153 Sum_probs=103.3
Q ss_pred ceeeeecccCC-CCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 155 TVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 155 ~l~~L~Ls~~~-I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
+|+.|.+.+|. |.+ .--+.++.+|++|.+|+|..| .|++.- ....-.++++|+.|+||-++-...+ .++.+.
T Consensus 165 nIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~-Lk~la~gC~kL~~lNlSwc~qi~~~---gv~~~~ 238 (483)
T KOG4341|consen 165 NIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVS-LKYLAEGCRKLKYLNLSWCPQISGN---GVQALQ 238 (483)
T ss_pred chhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHH-HHHHHHhhhhHHHhhhccCchhhcC---cchHHh
Confidence 56667777776 444 222344568899999998886 666653 2236678899999999888866553 345667
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccccCcccccC-CCCCCCCccccc
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFS-PAEMPSLSHLNI 310 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~-~~~L~~L~~LnL 310 (619)
+++.+|+.+.++...-.+.-+++.-. .+ ..-+..+||..| .|+.. ++|. .-....|+.|..
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~-~~--------------~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~ 301 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAA-AY--------------CLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCY 301 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHh-cc--------------ChHhhccchhhhccccch--HHHHHhhhhhHhhhhcc
Confidence 77888777766632222211111111 00 111334443333 22221 1221 114677888888
Q ss_pred CCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh-HHHhhhcCcccccc
Q 007072 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLN 362 (619)
Q Consensus 311 s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~-~~il~~lp~L~~LN 362 (619)
++..- ++-.-+..+-.++++|+-|.+..-..++..- ..+-..++.|..++
T Consensus 302 s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 302 SSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred cCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 77643 3322345567788888888877655444433 34445566665554
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.04 E-value=0.18 Score=30.82 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=7.8
Q ss_pred cccccccCccccccCc
Q 007072 278 SVTSLDLSNRCIHNLV 293 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp 293 (619)
+|+.|+|++|++..+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666666554
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.90 E-value=0.078 Score=59.90 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=43.6
Q ss_pred ccccccCccccccCcc----cccCCCCC-CCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 279 VTSLDLSNRCIHNLVN----KAFSPAEM-PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 279 L~~LdLS~N~I~~Lp~----~~f~~~~L-~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+..|++++|++...-- ..++ .+ +.|++|+++.|.|.+-...++...+..++.++.|.+..|..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~--~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLS--VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhc--ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 5568888887774411 1222 33 56688888888888877777888888888888888776653
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.69 E-value=1 Score=47.72 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=101.2
Q ss_pred CCceeeeecccCCCCcc-ccccccccCCCCCccEeecCCCccc--------chhhHHHHHhcccccceeecCCCcccccc
Q 007072 153 DGTVKWLELEDADIGDD-MLLSLNLSSKFPDLQALSLCGNKLE--------TVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~-~li~l~l~~~~p~L~~L~Ls~NkL~--------~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
++++..++||+|-|... |-.--....+-.+|+..+++.--.. ++--..+++-+||+|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 67888888888888772 1111111224566666666554221 22233456677888888888888776655
Q ss_pred cchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCccc-----cc-
Q 007072 224 DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK-----AF- 297 (619)
Q Consensus 224 ~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~-----~f- 297 (619)
+..+.+.| +.-..|+.|-|++|++-.+-.. .|
T Consensus 109 ~e~L~d~i------------------------------------------s~~t~l~HL~l~NnGlGp~aG~rigkal~~ 146 (388)
T COG5238 109 PEELGDLI------------------------------------------SSSTDLVHLKLNNNGLGPIAGGRIGKALFH 146 (388)
T ss_pred chHHHHHH------------------------------------------hcCCCceeEEeecCCCCccchhHHHHHHHH
Confidence 33222221 1234567777888877655432 11
Q ss_pred -----CCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCc--h--hHHHhhhcCccccccCcc
Q 007072 298 -----SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--S--AIEILESLPTLCTLNGVT 365 (619)
Q Consensus 298 -----~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~--~~~il~~lp~L~~LNg~~ 365 (619)
+..+=|.|+...+..|.+..-+.......|..=.+|+.+.+..|+.=.. . ..-=++-+.+|..|+-.|
T Consensus 147 la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 147 LAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred HHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 2336788999999999998888555445555556888888887764111 1 122234566666654443
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.67 E-value=0.42 Score=29.23 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=6.3
Q ss_pred CccEeecCCCcccch
Q 007072 182 DLQALSLCGNKLETV 196 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~ 196 (619)
+|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555443
No 83
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=82.56 E-value=0.91 Score=54.81 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.5
Q ss_pred cccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072 433 VRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL 480 (619)
Q Consensus 433 I~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~ 480 (619)
|.||-.|||+|++| .-+| .+=-+||+.+||..|||+|-||=
T Consensus 1254 inhscKPNc~~qkw--SVNG-----~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1254 INHSCKPNCEMQKW--SVNG-----EYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred cccccCCCCccccc--cccc-----eeeeeeeecCCCCCCceEEEecc
Confidence 56999999999988 2233 66668999999999999999974
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.99 E-value=0.25 Score=55.89 Aligned_cols=178 Identities=21% Similarity=0.184 Sum_probs=108.8
Q ss_pred eeeeecccCCCCcccccc-ccccCCCCCccEeecCCCcccchh--hHHHHHhcc-cccceeecCCCcccccccchhhhHH
Q 007072 156 VKWLELEDADIGDDMLLS-LNLSSKFPDLQALSLCGNKLETVE--IIVQEVTKL-KNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 156 l~~L~Ls~~~I~~~~li~-l~l~~~~p~L~~L~Ls~NkL~~~~--~v~~~l~~L-~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+..|.|.+|.|.+.-..- -......+.|..|+|++|.+.+.. .+...++.. +.|++|++..|.+.......+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~- 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV- 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-
Confidence 567788999988831111 111236788889999999887432 233334444 667889999988887654333333
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc--cccCCCCCCC-Cccc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN--KAFSPAEMPS-LSHL 308 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~--~~f~~~~L~~-L~~L 308 (619)
+...+.|+.++++...-. .++.. -.+..+.....+..+++.|+|++|.++...- -.+.....++ +..|
T Consensus 168 L~~~~~l~~l~l~~n~l~-~~g~~--------~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el 238 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI-ELGLL--------VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLREL 238 (478)
T ss_pred HhcccchhHHHHHhcccc-hhhhH--------HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHH
Confidence 333677777776532211 11100 0011111112246788999999999883211 1222224555 7779
Q ss_pred ccCCCCCCccchHHHHHHHhCC-CCCccccccCCCC
Q 007072 309 NIRGNPLEQNSVRELLEVLKGF-PCLQSLGVDIPGP 343 (619)
Q Consensus 309 nLs~N~i~~i~~~~l~~~l~~~-~~L~sL~ld~p~~ 343 (619)
++..|.+.+..+..+...+... +.++.|++..+..
T Consensus 239 ~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 239 DLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred HHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 9999999988887888888888 8889998887764
No 85
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=78.15 E-value=2.1 Score=38.78 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred eeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccc
Q 007072 422 VWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (619)
Q Consensus 422 ~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~ 479 (619)
.-..|=-+++-++||-.||+.+.+-.. +.+ ..-.+--++||++|||||=.|
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~-~~~------~~~~~~a~r~I~~GeEi~isY 161 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFD-GDG------GCLVVRATRDIKKGEEIFISY 161 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEE-TTT------TEEEEEESS-B-TTSBEEEES
T ss_pred cccccCcHhHheccccccccceeeEee-ccc------ceEEEEECCccCCCCEEEEEE
Confidence 345555789999999999998864433 222 344556689999999998554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=75.29 E-value=1.9 Score=28.62 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=11.0
Q ss_pred CCccEeecCCCcccchh
Q 007072 181 PDLQALSLCGNKLETVE 197 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~ 197 (619)
++|+.|+|++|.|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666665
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=75.29 E-value=1.9 Score=28.62 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=11.0
Q ss_pred CCccEeecCCCcccchh
Q 007072 181 PDLQALSLCGNKLETVE 197 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~ 197 (619)
++|+.|+|++|.|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666665
No 88
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=73.73 E-value=2.7 Score=45.86 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=45.0
Q ss_pred ccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 426 MDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 426 mDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
.-.+|--|+||=.||+-+.+.+.- ....+..+-++|+.++|.+|+|+|-||...
T Consensus 269 ~GNv~RfinHSC~PN~~~~~v~~~---~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 269 HGNVARFINHSCSPNLLYQAVFQD---EFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred cccccccccCCCCccceeeeeeec---CCccchheeeeeeccccCCCcccchhhccc
Confidence 347899999999999998777665 234478888999999999999999998754
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.48 E-value=0.42 Score=49.43 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=62.9
Q ss_pred CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~ 258 (619)
.+...+.|||+.|.+.... .-++.+..|..|+||.|.+.....+
T Consensus 40 ~~kr~tvld~~s~r~vn~~---~n~s~~t~~~rl~~sknq~~~~~~d--------------------------------- 83 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG---KNFSILTRLVRLDLSKNQIKFLPKD--------------------------------- 83 (326)
T ss_pred ccceeeeehhhhhHHHhhc---cchHHHHHHHHHhccHhhHhhChhh---------------------------------
Confidence 4567788888888887764 6677788888888988887655421
Q ss_pred cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
+..+..+..+++-+|+.+..|.+.- .+|.++++++.+|++
T Consensus 84 --------------~~q~~e~~~~~~~~n~~~~~p~s~~---k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 84 --------------AKQQRETVNAASHKNNHSQQPKSQK---KEPHPKKNEQKKTEF 123 (326)
T ss_pred --------------HHHHHHHHHHHhhccchhhCCcccc---ccCCcchhhhccCcc
Confidence 1124566777888889998876544 699999999999995
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.83 E-value=2.4 Score=43.10 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=53.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..|+.++-+++.|-. +.+.-...++.|++|.|.+|+ +.+. .....=...++|+.|+|++|+-..-. ...-+
T Consensus 101 ~~IeaVDAsds~I~~---eGle~L~~l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~----GL~~L 172 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY---EGLEHLRDLRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDG----GLACL 172 (221)
T ss_pred ceEEEEecCCchHHH---HHHHHHhccchhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechh----HHHHH
Confidence 456667777777666 777777788888888888883 3333 22222234788999999988743321 23456
Q ss_pred hcCCcccccccc
Q 007072 233 QGCPKLEIYNSN 244 (619)
Q Consensus 233 ~~lP~LeiLn~~ 244 (619)
..|++|..|.+.
T Consensus 173 ~~lknLr~L~l~ 184 (221)
T KOG3864|consen 173 LKLKNLRRLHLY 184 (221)
T ss_pred HHhhhhHHHHhc
Confidence 667777755443
No 91
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=67.91 E-value=4.9 Score=49.34 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=39.2
Q ss_pred ccccccccCCCCCc--eeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCCc
Q 007072 428 ELGSAVRHSDEPNF--RVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGED 486 (619)
Q Consensus 428 E~GsaI~HSd~PN~--r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~~ 486 (619)
.+...|+||=+||| |++ .+ +| .-=-|++-.++|..|||+|-||.+...++
T Consensus 938 niAr~InHsC~PNCyakvi---~V-~g-----~~~IvIyakr~I~~~EElTYDYkF~~e~~ 989 (1005)
T KOG1080|consen 938 NIARFINHSCNPNCYAKVI---TV-EG-----DKRIVIYSKRDIAAGEELTYDYKFPTEDD 989 (1005)
T ss_pred chhheeecccCCCceeeEE---Ee-cC-----eeEEEEEEecccccCceeeeecccccccc
Confidence 45678999999999 442 22 44 34668888999999999999999887655
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.71 E-value=3.6 Score=28.16 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=10.1
Q ss_pred cccceeecCCCcccccc
Q 007072 207 KNLRALWLNNNPVLKKC 223 (619)
Q Consensus 207 ~~Lk~L~Ls~Npi~~~~ 223 (619)
.+|+.|||+.|+|....
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666665544
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=65.02 E-value=4.4 Score=54.08 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=44.0
Q ss_pred ccCccccccCcccccCCCCCCCCcccccCCCCC-CccchHHHHHHHhCC----CCCccccccCCCC
Q 007072 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL-EQNSVRELLEVLKGF----PCLQSLGVDIPGP 343 (619)
Q Consensus 283 dLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i-~~i~~~~l~~~l~~~----~~L~sL~ld~p~~ 343 (619)
||++|+|..||...|. .|++|+.|+|++|++ ++=....|.+++..- .....+.|..|..
T Consensus 1 DLSnN~LstLp~g~F~--~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~ 64 (2740)
T TIGR00864 1 DISNNKISTIEEGICA--NLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGA 64 (2740)
T ss_pred CCCCCcCCccChHHhc--cCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChH
Confidence 7999999999999998 899999999999998 333333455555433 2345666777764
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.05 E-value=4.7 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.1
Q ss_pred CCCccEeecCCCcccchh
Q 007072 180 FPDLQALSLCGNKLETVE 197 (619)
Q Consensus 180 ~p~L~~L~Ls~NkL~~~~ 197 (619)
+.+|+.|+|++|+|+.++
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 468899999999998776
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.68 E-value=5.5 Score=25.89 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=7.3
Q ss_pred CCccEeecCCCcccc
Q 007072 181 PDLQALSLCGNKLET 195 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~ 195 (619)
++|+.|+|++|+|.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455556666665544
No 96
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=59.86 E-value=8.1 Score=40.97 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=43.7
Q ss_pred cccccccCCCCCcee--eceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCCccchhhhccccc
Q 007072 429 LGSAVRHSDEPNFRV--APFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF 497 (619)
Q Consensus 429 ~GsaI~HSd~PN~r~--~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~~~~R~a~L~pw~ 497 (619)
+|--|+||-.+|+.. |-+ .| ...-||---+||..|||++-|| | |...-+..-+||.
T Consensus 333 lGRLINHS~~gNl~TKvv~I----dg-----~pHLiLvA~rdIa~GEELlYDY--G--DRSkesi~~hPWL 390 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVVEI----DG-----SPHLILVARRDIAQGEELLYDY--G--DRSKESIAKHPWL 390 (392)
T ss_pred chhhhcccccCcceeeEEEe----cC-----CceEEEEeccccccchhhhhhc--c--ccchhHHhhCccc
Confidence 699999999999964 333 44 6788888899999999999885 3 3344456678885
No 97
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=59.10 E-value=7.2 Score=34.77 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred echhHHHhhcCCCCEEecCCCCCccEEEEecc
Q 007072 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQ 576 (619)
Q Consensus 545 td~~~v~~~Lt~~~F~lvd~~~eADIiW~~~h 576 (619)
.|.+.+...|....|++|+++++||++=+.+.
T Consensus 14 ~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC 45 (98)
T PF00919_consen 14 YDSERIASILQAAGYEIVDDPEEADVIIINTC 45 (98)
T ss_pred HHHHHHHHHHHhcCCeeecccccCCEEEEEcC
Confidence 48889999999999999999999999987553
No 98
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=57.26 E-value=6.7 Score=44.39 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.8
Q ss_pred cccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 427 DELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 427 DE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
..+|..|+||.+||+...+. +.. ++-.++..-++||..|+|+|-||=.-
T Consensus 403 g~~~r~~nHS~~pN~~~~~~---~~~----g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 403 GDVARFINHSCTPNCEASPI---EVN----GIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred ccccceeecCCCCCcceecc---ccc----ccceeeecccccchhhhhhccccccc
Confidence 37889999999999987543 111 16788899999999999999997543
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.05 E-value=7.6 Score=26.71 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=12.6
Q ss_pred CcccccccCccccccCcc
Q 007072 277 QSVTSLDLSNRCIHNLVN 294 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~ 294 (619)
.+|+.|+.|+|++.++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777764
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.30 E-value=13 Score=25.43 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=12.0
Q ss_pred CCCcccccCCCCCCccc
Q 007072 303 PSLSHLNIRGNPLEQNS 319 (619)
Q Consensus 303 ~~L~~LnLs~N~i~~i~ 319 (619)
++|++|+|++|.|.+-.
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 46777888888776544
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.60 E-value=16 Score=49.19 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=24.0
Q ss_pred ecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 187 SLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 187 ~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
||++|+|+.++ ...+.+|++|+.|+|++||+.=-|
T Consensus 1 DLSnN~LstLp--~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIE--EGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccC--hHHhccCCCceEEEeeCCcccccc
Confidence 46677777776 357777777777777777766444
No 102
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.53 E-value=35 Score=39.11 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=55.4
Q ss_pred chhHHHhhcCCCCE-EecCCCCCccEEEEecccchhHHHhhCCCCceeeccCCCCchhhhhhHHHHHHHhhhc
Q 007072 546 DIPYVEEFLTRTEF-VITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRK 617 (619)
Q Consensus 546 d~~~v~~~Lt~~~F-~lvd~~~eADIiW~~~h~~~d~k~~~~~~p~~~iNQFP~E~~lt~Kd~La~~~~~~~~ 617 (619)
+-..|++.+.+.++ +++..-+++.+.|...+.. +|.......-.|.+|.||.=.-||.||+|+..++|-..
T Consensus 84 ~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~-~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~ 155 (497)
T KOG2157|consen 84 EPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGI-DFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLA 155 (497)
T ss_pred chHHHHHHHhhcceeeecccccceEEEEeccccc-cHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHH
Confidence 34478888888664 6666999999999988876 55544433335999999999999999999998887543
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.93 E-value=31 Score=22.87 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=11.2
Q ss_pred CCCccEeecCCC-cccch
Q 007072 180 FPDLQALSLCGN-KLETV 196 (619)
Q Consensus 180 ~p~L~~L~Ls~N-kL~~~ 196 (619)
||+|+.|+|++| .|++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777 45554
No 104
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=28.01 E-value=45 Score=36.72 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=32.8
Q ss_pred ceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccc
Q 007072 420 TSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (619)
Q Consensus 420 ~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~ 479 (619)
+-.|.=+ |.-|+|.=.|||+.|+ .| ..=.-+=.++||++|||||.=|
T Consensus 190 aqLwLGP---aafINHDCrpnCkFvs-----~g-----~~tacvkvlRDIePGeEITcFY 236 (453)
T KOG2589|consen 190 AQLWLGP---AAFINHDCRPNCKFVS-----TG-----RDTACVKVLRDIEPGEEITCFY 236 (453)
T ss_pred hhheecc---HHhhcCCCCCCceeec-----CC-----CceeeeehhhcCCCCceeEEee
Confidence 4567522 3459999999999854 44 1222234589999999999976
No 105
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=27.22 E-value=39 Score=34.82 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=23.8
Q ss_pred EechhHHHhhcCCCCEEecCCCCCccEEEEeccc
Q 007072 544 YTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQV 577 (619)
Q Consensus 544 ytd~~~v~~~Lt~~~F~lvd~~~eADIiW~~~h~ 577 (619)
|+--..+.+.|..+. -.|+||+|||++.+-...
T Consensus 37 ~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP~~~ 69 (302)
T PF03016_consen 37 YALEVILHEALLNSP-FRTDDPEEADLFFVPFYS 69 (302)
T ss_pred chHHHHHHHHHHhCC-cEeCCHHHCeEEEEEccc
Confidence 333345666776666 689999999999987543
No 106
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=58 Score=38.56 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.5
Q ss_pred cccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccc
Q 007072 433 VRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (619)
Q Consensus 433 I~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~ 479 (619)
|+||=+||+-+-=+ -+|. .-=-=+|..+.|.+|+|+|=||
T Consensus 197 iNHSC~PNa~~~KW-tV~~------~lRvGiFakk~I~~GEEITFDY 236 (729)
T KOG4442|consen 197 INHSCDPNAEVQKW-TVPD------ELRVGIFAKKVIKPGEEITFDY 236 (729)
T ss_pred hcCCCCCCceeeee-eeCC------eeEEEEeEecccCCCceeeEec
Confidence 78999999964222 1121 1111257789999999999998
No 107
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=23.63 E-value=45 Score=29.20 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=13.3
Q ss_pred HHhcCCCCHHHHHHHHHHhh
Q 007072 21 LLAASGLPQSLHRQLFQKLT 40 (619)
Q Consensus 21 ~l~~~~~P~~l~~~L~~kl~ 40 (619)
.-.|--+|++||+|||+--.
T Consensus 11 ~c~alkipe~~wpql~e~~s 30 (106)
T PF09241_consen 11 VCHALKIPEDFWPQLFEATS 30 (106)
T ss_dssp HHHHTT--GGGHHHHHHHHH
T ss_pred hhhhccCcHHHhHHHHHHHH
Confidence 34566789999999998543
No 108
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=23.45 E-value=6.9 Score=40.84 Aligned_cols=60 Identities=20% Similarity=0.081 Sum_probs=45.0
Q ss_pred CCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 276 L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+..|.-||||.|.|..+|...- .+..+.++++-+|+.++.+ ..++..|.++.++...+.+
T Consensus 64 ~t~~~rl~~sknq~~~~~~d~~---q~~e~~~~~~~~n~~~~~p-----~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIKFLPKDAK---QQRETVNAASHKNNHSQQP-----KSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHhhChhhHH---HHHHHHHHHhhccchhhCC-----ccccccCCcchhhhccCcc
Confidence 5567788999999999876444 6778888899999887766 3466677777777665543
No 109
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=22.17 E-value=1.1e+02 Score=35.67 Aligned_cols=57 Identities=30% Similarity=0.488 Sum_probs=43.6
Q ss_pred CCccccccHHHHHHHhHHHHhcCCCCHHHHHHHHHHhhhcccCCCCceeEEEccCCceeEE
Q 007072 3 SNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRL 63 (619)
Q Consensus 3 ~~~~~~~~~~~f~~~H~~~l~~~~~P~~l~~~L~~kl~~~~fDag~~F~i~~~~~~~~~~~ 63 (619)
|.+.+++.|-.|++-- +.|. ++|+++.-++-+-|..+-||+|+|- |-+-+.+++|.+
T Consensus 262 tg~~r~~~~~~fLrsv-~~~q--~l~Ee~L~KiaD~le~~~Yd~g~yI-irqge~G~~ffi 318 (732)
T KOG0614|consen 262 TGLERHEQYMNFLRSV-PLFQ--NLPEELLLKIADVLEEEYYDAGEYI-IRQGEKGDTFFI 318 (732)
T ss_pred HHHHHHHHHHHHHHhh-hhhc--cCCHHHHHHHHHHHHHHhhcCCceE-EeecCCCCeEEE
Confidence 3456777788887643 3444 8999999999999999999999997 665566666654
No 110
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.62 E-value=46 Score=36.10 Aligned_cols=26 Identities=46% Similarity=0.784 Sum_probs=21.8
Q ss_pred ecccccccccc-----CCCCCceeeceeeccCC
Q 007072 425 VMDELGSAVRH-----SDEPNFRVAPFLFMPEG 452 (619)
Q Consensus 425 vmDE~GsaI~H-----Sd~PN~r~~Pf~~~p~~ 452 (619)
++|.+|-.+.. -|..|||| ++|||++
T Consensus 2 l~D~~gR~~~~LRiSvTdrCNfrC--~YCm~eg 32 (322)
T COG2896 2 LVDRFGRPVRYLRISVTDRCNFRC--TYCMPEG 32 (322)
T ss_pred cccccCCEeceEEEEEecCcCCcc--cccCCCC
Confidence 57888876655 78999999 8999997
Done!