Query 007072
Match_columns 619
No_of_seqs 186 out of 188
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6q_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 150.7 9.5 174 154-361 37-210 (270)
2 3m19_A Variable lymphocyte rec 99.5 7.8E-15 2.7E-19 145.8 9.5 156 154-342 35-190 (251)
3 1ozn_A Reticulon 4 receptor; N 99.5 2.1E-14 7.1E-19 144.6 9.7 175 153-361 55-230 (285)
4 2o6q_A Variable lymphocyte rec 99.5 2.5E-14 8.5E-19 143.6 9.8 159 152-343 59-217 (270)
5 1ozn_A Reticulon 4 receptor; N 99.5 1.6E-14 5.4E-19 145.5 8.3 174 154-361 32-206 (285)
6 3zyj_A Leucine-rich repeat-con 99.5 2.6E-14 8.8E-19 153.4 9.4 187 152-361 86-284 (440)
7 3zyi_A Leucine-rich repeat-con 99.5 3.3E-14 1.1E-18 153.1 9.5 187 152-361 97-295 (452)
8 3rfs_A Internalin B, repeat mo 99.5 7E-14 2.4E-18 140.7 10.8 170 154-361 41-210 (272)
9 3m19_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 139.8 9.3 169 156-361 16-184 (251)
10 3rfs_A Internalin B, repeat mo 99.5 7.6E-14 2.6E-18 140.5 9.3 156 153-343 62-217 (272)
11 2xot_A Amphoterin-induced prot 99.4 8.9E-14 3.1E-18 145.9 8.4 159 154-343 39-201 (361)
12 1p9a_G Platelet glycoprotein I 99.4 1.6E-13 5.4E-18 140.3 9.7 154 154-343 31-184 (290)
13 1h6t_A Internalin B; cell adhe 99.4 5.2E-13 1.8E-17 136.4 13.3 144 154-342 46-189 (291)
14 2v9t_B SLIT homolog 2 protein 99.4 1.2E-13 4.2E-18 135.4 8.3 62 275-342 102-163 (220)
15 2z66_A Variable lymphocyte rec 99.4 1.2E-13 4.1E-18 140.3 8.3 170 154-342 28-210 (306)
16 1h6u_A Internalin H; cell adhe 99.4 5.8E-13 2E-17 136.9 13.0 160 154-361 63-222 (308)
17 2id5_A Lingo-1, leucine rich r 99.4 1.2E-13 3.9E-18 149.0 8.0 174 154-361 32-205 (477)
18 1wwl_A Monocyte differentiatio 99.4 2.8E-13 9.4E-18 139.0 10.4 157 154-342 149-307 (312)
19 1p9a_G Platelet glycoprotein I 99.4 2.8E-13 9.6E-18 138.4 10.1 169 153-361 9-177 (290)
20 2o6s_A Variable lymphocyte rec 99.4 2E-13 7E-18 131.3 8.5 131 155-342 29-159 (208)
21 3zyi_A Leucine-rich repeat-con 99.4 1.8E-13 6E-18 147.4 8.9 189 154-361 75-271 (452)
22 2z80_A TOLL-like receptor 2, v 99.4 8.8E-14 3E-18 144.5 6.3 176 152-342 74-288 (353)
23 2z62_A TOLL-like receptor 4, v 99.4 1.9E-13 6.6E-18 136.9 8.6 137 154-319 28-165 (276)
24 3zyj_A Leucine-rich repeat-con 99.4 1.7E-13 6E-18 146.9 8.6 189 154-361 64-260 (440)
25 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-13 6.4E-18 134.1 8.1 62 275-342 103-164 (220)
26 1m9s_A Internalin B; cell inva 99.4 2.3E-13 7.9E-18 153.7 9.5 192 153-389 64-258 (605)
27 2xwt_C Thyrotropin receptor; s 99.4 3.7E-14 1.3E-18 139.4 2.6 152 154-341 31-189 (239)
28 2z66_A Variable lymphocyte rec 99.4 1.1E-13 3.8E-18 140.5 6.0 160 152-343 76-235 (306)
29 1h6t_A Internalin B; cell adhe 99.4 3.3E-13 1.1E-17 137.8 9.5 170 153-367 67-238 (291)
30 2z80_A TOLL-like receptor 2, v 99.4 1.6E-13 5.5E-18 142.6 7.1 175 154-361 52-227 (353)
31 4fcg_A Uncharacterized protein 99.4 2.2E-13 7.6E-18 141.4 8.1 160 153-341 80-239 (328)
32 3e6j_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 133.1 8.2 152 155-343 20-171 (229)
33 4glp_A Monocyte differentiatio 99.4 7.6E-13 2.6E-17 135.4 10.7 54 277-341 251-304 (310)
34 4ezg_A Putative uncharacterize 99.4 3.5E-13 1.2E-17 129.2 7.1 149 153-342 43-192 (197)
35 3o6n_A APL1; leucine-rich repe 99.4 2.5E-13 8.7E-18 142.7 6.2 137 154-319 45-181 (390)
36 1h6u_A Internalin H; cell adhe 99.4 1.8E-12 6.1E-17 133.3 12.4 160 154-361 41-200 (308)
37 2z7x_B TOLL-like receptor 1, v 99.4 1.2E-12 4.1E-17 142.4 11.2 159 152-343 322-480 (520)
38 4g8a_A TOLL-like receptor 4; l 99.4 9.3E-13 3.2E-17 144.6 10.2 141 154-323 52-193 (635)
39 2v9t_B SLIT homolog 2 protein 99.4 5.4E-13 1.9E-17 130.8 7.3 144 157-361 14-157 (220)
40 3v47_A TOLL-like receptor 5B a 99.4 1.6E-12 5.3E-17 138.6 11.5 88 152-246 77-164 (455)
41 1ziw_A TOLL-like receptor 3; i 99.4 9.9E-13 3.4E-17 147.8 10.4 186 153-361 404-614 (680)
42 2ft3_A Biglycan; proteoglycan, 99.4 2.4E-12 8.2E-17 132.6 12.0 181 153-361 77-269 (332)
43 1xku_A Decorin; proteoglycan, 99.4 2.3E-12 7.8E-17 132.4 11.7 153 153-342 99-251 (330)
44 2id5_A Lingo-1, leucine rich r 99.4 3.3E-13 1.1E-17 145.4 5.2 158 152-342 54-211 (477)
45 3o6n_A APL1; leucine-rich repe 99.3 1.7E-12 5.7E-17 136.5 10.0 189 153-361 92-323 (390)
46 3v47_A TOLL-like receptor 5B a 99.3 7.8E-13 2.7E-17 141.0 7.5 80 275-361 297-376 (455)
47 3o53_A Protein LRIM1, AGAP0063 99.3 6.1E-13 2.1E-17 136.8 6.1 171 154-363 99-269 (317)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2E-12 6.7E-17 142.8 10.4 158 152-343 351-509 (562)
49 2z62_A TOLL-like receptor 4, v 99.3 8.9E-13 3E-17 132.1 6.7 156 154-342 76-235 (276)
50 3oja_B Anopheles plasmodium-re 99.3 6.8E-13 2.3E-17 148.2 6.4 82 154-245 51-132 (597)
51 2wfh_A SLIT homolog 2 protein 99.3 2.3E-12 8E-17 124.1 8.7 125 157-342 13-137 (193)
52 3oja_B Anopheles plasmodium-re 99.3 2.1E-12 7.3E-17 144.2 9.3 189 153-361 98-329 (597)
53 1xeu_A Internalin C; cellular 99.3 1.5E-12 5.2E-17 131.2 7.3 169 153-367 40-210 (263)
54 4glp_A Monocyte differentiatio 99.3 1.2E-12 4.1E-17 133.9 6.1 77 275-361 222-299 (310)
55 4fmz_A Internalin; leucine ric 99.3 1.1E-11 3.9E-16 127.4 13.2 166 152-342 153-322 (347)
56 3e6j_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 125.3 8.9 146 181-361 19-164 (229)
57 2z81_A CD282 antigen, TOLL-lik 99.3 1.8E-12 6.2E-17 141.5 7.2 156 154-341 26-182 (549)
58 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.5E-17 117.6 6.5 132 153-339 16-148 (149)
59 2ast_B S-phase kinase-associat 99.3 1.4E-12 4.9E-17 133.4 5.7 179 153-361 92-277 (336)
60 1ogq_A PGIP-2, polygalacturona 99.3 2.2E-12 7.7E-17 132.6 7.2 155 153-342 100-255 (313)
61 4fcg_A Uncharacterized protein 99.3 2.8E-12 9.6E-17 133.1 7.9 158 153-342 103-264 (328)
62 1xeu_A Internalin C; cellular 99.3 2.9E-12 1E-16 129.1 7.7 159 154-361 19-177 (263)
63 1m9s_A Internalin B; cell inva 99.3 6.3E-12 2.2E-16 142.0 11.3 160 154-361 43-202 (605)
64 3t6q_A CD180 antigen; protein- 99.3 2.6E-12 9E-17 142.1 7.8 171 155-341 255-435 (606)
65 1xku_A Decorin; proteoglycan, 99.3 3.4E-12 1.2E-16 131.1 8.0 154 154-342 121-274 (330)
66 4fmz_A Internalin; leucine ric 99.3 1.4E-11 4.9E-16 126.7 12.6 161 154-361 66-226 (347)
67 3o53_A Protein LRIM1, AGAP0063 99.3 1.5E-12 5E-17 133.9 4.9 148 153-342 33-180 (317)
68 3oja_A Leucine-rich immune mol 99.3 2E-12 6.8E-17 141.7 6.2 177 154-361 34-219 (487)
69 2z81_A CD282 antigen, TOLL-lik 99.3 9.5E-12 3.2E-16 135.8 11.5 181 154-361 310-502 (549)
70 3vq2_A TLR4, TOLL-like recepto 99.3 3.6E-12 1.2E-16 141.0 8.1 175 152-343 348-533 (606)
71 2ft3_A Biglycan; proteoglycan, 99.3 6E-12 2E-16 129.6 8.9 169 152-343 100-276 (332)
72 1ziw_A TOLL-like receptor 3; i 99.3 9.2E-12 3.1E-16 139.9 10.8 156 154-342 25-182 (680)
73 3t6q_A CD180 antigen; protein- 99.3 8E-12 2.7E-16 138.2 10.1 156 154-342 33-190 (606)
74 4g8a_A TOLL-like receptor 4; l 99.3 5.2E-12 1.8E-16 138.7 8.1 148 161-343 38-185 (635)
75 2xwt_C Thyrotropin receptor; s 99.3 4.4E-12 1.5E-16 124.6 6.6 157 152-343 53-217 (239)
76 2v70_A SLIT-2, SLIT homolog 2 99.3 5.3E-12 1.8E-16 123.7 6.9 145 157-361 14-158 (220)
77 2ell_A Acidic leucine-rich nuc 99.2 4.1E-12 1.4E-16 118.1 5.8 63 154-222 24-86 (168)
78 1ogq_A PGIP-2, polygalacturona 99.2 2.4E-12 8.1E-17 132.5 4.5 172 153-361 75-249 (313)
79 3goz_A Leucine-rich repeat-con 99.2 5.4E-12 1.9E-16 132.0 7.3 89 154-246 22-119 (362)
80 1w8a_A SLIT protein; signaling 99.2 6.6E-12 2.3E-16 120.3 7.2 127 157-342 11-137 (192)
81 3oja_A Leucine-rich immune mol 99.2 4.1E-12 1.4E-16 139.2 6.4 150 155-343 100-249 (487)
82 2xot_A Amphoterin-induced prot 99.2 6.9E-12 2.4E-16 131.5 7.7 165 157-358 21-189 (361)
83 2o6s_A Variable lymphocyte rec 99.2 1.1E-11 3.7E-16 119.3 8.2 144 157-361 10-153 (208)
84 1a9n_A U2A', U2A'; complex (nu 99.2 6.4E-12 2.2E-16 118.3 6.4 132 153-341 18-150 (176)
85 2o6r_A Variable lymphocyte rec 99.2 1.2E-11 4.1E-16 116.1 8.0 126 157-342 10-135 (177)
86 4ezg_A Putative uncharacterize 99.2 8.3E-12 2.8E-16 119.6 6.8 145 178-361 41-186 (197)
87 1wwl_A Monocyte differentiatio 99.2 5.1E-12 1.7E-16 129.6 5.6 86 152-247 93-184 (312)
88 2z63_A TOLL-like receptor 4, v 99.2 6.2E-12 2.1E-16 137.4 6.6 156 154-342 28-188 (570)
89 3bz5_A Internalin-J, INLJ; leu 99.2 3E-11 1E-15 131.4 11.5 75 153-246 84-158 (457)
90 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 116.9 6.5 134 177-367 15-151 (176)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 3E-11 1E-15 133.3 11.3 82 152-245 74-155 (562)
92 3vq2_A TLR4, TOLL-like recepto 99.2 6E-12 2.1E-16 139.2 5.5 137 154-319 32-169 (606)
93 2z63_A TOLL-like receptor 4, v 99.2 7.3E-12 2.5E-16 136.9 5.9 159 152-342 345-505 (570)
94 2ast_B S-phase kinase-associat 99.2 2.6E-11 8.8E-16 124.0 9.3 184 152-367 116-306 (336)
95 2ell_A Acidic leucine-rich nuc 99.2 1E-11 3.5E-16 115.4 5.4 134 179-342 22-158 (168)
96 2ca6_A RAN GTPase-activating p 99.2 2.4E-11 8.2E-16 127.7 8.4 192 154-362 94-309 (386)
97 3goz_A Leucine-rich repeat-con 99.2 2.4E-11 8.3E-16 127.1 8.4 187 159-361 3-201 (362)
98 3rgz_A Protein brassinosteroid 99.2 3.1E-11 1E-15 138.9 9.7 174 154-343 466-692 (768)
99 1o6v_A Internalin A; bacterial 99.2 1.3E-10 4.4E-15 125.5 13.9 144 154-342 177-320 (466)
100 1o6v_A Internalin A; bacterial 99.2 1E-10 3.5E-15 126.2 12.7 78 153-246 198-275 (466)
101 2wfh_A SLIT homolog 2 protein 99.2 2.9E-11 1E-15 116.4 6.9 120 154-327 31-151 (193)
102 2ca6_A RAN GTPase-activating p 99.2 9.2E-12 3.2E-16 130.8 3.4 192 153-359 121-333 (386)
103 1w8a_A SLIT protein; signaling 99.1 4.4E-11 1.5E-15 114.6 7.2 110 155-316 30-139 (192)
104 2o6r_A Variable lymphocyte rec 99.1 6.3E-11 2.2E-15 111.2 7.8 111 154-317 28-138 (177)
105 2je0_A Acidic leucine-rich nuc 99.1 2.1E-11 7.1E-16 111.2 4.3 131 179-365 15-149 (149)
106 1z7x_W Ribonuclease inhibitor; 99.1 9.8E-12 3.3E-16 132.5 2.2 173 154-341 56-237 (461)
107 2z7x_B TOLL-like receptor 1, v 99.1 7.9E-11 2.7E-15 128.0 9.3 144 157-342 3-149 (520)
108 4ay9_X Follicle-stimulating ho 99.1 1.7E-11 5.7E-16 127.9 3.8 172 154-342 30-213 (350)
109 4ay9_X Follicle-stimulating ho 99.1 1.5E-11 5.2E-16 128.2 3.4 157 152-319 52-218 (350)
110 1z7x_W Ribonuclease inhibitor; 99.1 2.7E-11 9.2E-16 129.1 5.0 68 276-343 340-410 (461)
111 3g39_A Variable lymphocyte rec 99.1 1.1E-10 3.8E-15 109.9 8.2 120 156-331 11-132 (170)
112 3j0a_A TOLL-like receptor 5; m 99.1 3.6E-11 1.2E-15 139.8 5.8 142 154-322 24-167 (844)
113 3j0a_A TOLL-like receptor 5; m 99.1 5.3E-11 1.8E-15 138.4 7.2 178 152-342 312-537 (844)
114 3bz5_A Internalin-J, INLJ; leu 99.1 2.3E-10 7.8E-15 124.4 11.1 171 154-361 42-217 (457)
115 1ds9_A Outer arm dynein; leuci 99.1 9.2E-13 3.1E-17 126.4 -7.3 155 154-367 18-185 (198)
116 4eco_A Uncharacterized protein 99.1 1.8E-10 6.2E-15 130.0 9.6 56 278-340 489-545 (636)
117 1dce_A Protein (RAB geranylger 99.1 8.9E-11 3.1E-15 131.5 6.5 107 182-319 442-549 (567)
118 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 109.4 7.4 106 157-318 15-120 (174)
119 3un9_A NLR family member X1; l 99.1 7.9E-11 2.7E-15 125.2 5.7 186 154-356 72-263 (372)
120 4eco_A Uncharacterized protein 99.1 1.8E-10 6.1E-15 130.0 8.9 62 275-343 511-578 (636)
121 3g06_A SSPH2 (leucine-rich rep 99.0 4.8E-10 1.6E-14 127.1 9.9 52 277-342 221-272 (622)
122 3rgz_A Protein brassinosteroid 99.0 2.2E-10 7.7E-15 131.7 7.3 157 155-343 369-526 (768)
123 4ecn_A Leucine-rich repeat pro 99.0 3.4E-10 1.2E-14 133.1 7.7 79 154-245 548-628 (876)
124 1dce_A Protein (RAB geranylger 98.9 6.7E-10 2.3E-14 124.5 7.6 155 176-362 404-566 (567)
125 3cvr_A Invasion plasmid antige 98.9 1.1E-09 3.8E-14 123.0 9.3 148 154-343 80-242 (571)
126 4ecn_A Leucine-rich repeat pro 98.9 8E-10 2.7E-14 129.9 7.9 160 155-343 645-818 (876)
127 3g06_A SSPH2 (leucine-rich rep 98.9 2.7E-09 9.3E-14 121.0 11.3 58 275-343 239-296 (622)
128 3cvr_A Invasion plasmid antige 98.9 1.9E-09 6.6E-14 121.1 10.0 125 155-319 121-246 (571)
129 3g39_A Variable lymphocyte rec 98.9 6.5E-10 2.2E-14 104.7 5.2 105 182-343 10-114 (170)
130 4b8c_D Glucose-repressible alc 98.9 1.1E-09 3.6E-14 126.2 7.9 137 153-319 190-332 (727)
131 2r9u_A Variable lymphocyte rec 98.9 9.1E-10 3.1E-14 104.3 5.2 103 183-342 14-116 (174)
132 1jl5_A Outer protein YOPM; leu 98.9 5.1E-09 1.7E-13 113.7 11.4 137 155-342 132-268 (454)
133 4b8c_D Glucose-repressible alc 98.9 1.6E-09 5.6E-14 124.6 7.3 150 154-344 173-329 (727)
134 3sb4_A Hypothetical leucine ri 98.9 7.1E-10 2.4E-14 114.4 3.6 193 153-362 48-303 (329)
135 1ds9_A Outer arm dynein; leuci 98.8 7.3E-11 2.5E-15 113.1 -5.6 127 153-337 47-180 (198)
136 2ifg_A High affinity nerve gro 98.8 5.5E-09 1.9E-13 107.9 7.3 104 158-317 12-117 (347)
137 3ogk_B Coronatine-insensitive 98.8 8.5E-09 2.9E-13 113.3 8.3 20 20-39 9-28 (592)
138 1jl5_A Outer protein YOPM; leu 98.8 1.5E-08 5.3E-13 109.9 9.9 56 275-342 193-248 (454)
139 3ogk_B Coronatine-insensitive 98.8 1.7E-09 5.8E-14 118.9 2.2 90 154-246 112-202 (592)
140 2p1m_B Transport inhibitor res 98.7 1.6E-09 5.6E-14 118.9 0.9 185 153-361 104-343 (594)
141 3un9_A NLR family member X1; l 98.7 5E-09 1.7E-13 111.3 2.7 164 180-361 71-244 (372)
142 2p1m_B Transport inhibitor res 98.6 8.7E-09 3E-13 113.1 3.5 81 275-361 287-377 (594)
143 2ifg_A High affinity nerve gro 98.6 1.6E-08 5.6E-13 104.3 5.4 103 184-343 11-115 (347)
144 3sb4_A Hypothetical leucine ri 98.6 3.2E-08 1.1E-12 102.0 5.9 177 153-361 100-326 (329)
145 3rw6_A Nuclear RNA export fact 98.4 1.2E-07 4.1E-12 97.0 4.0 121 177-367 137-262 (267)
146 1io0_A Tropomodulin; LRR prote 98.4 4.3E-07 1.5E-11 86.8 7.3 65 278-342 94-162 (185)
147 3tig_A TTL protein; ATP-grAsp, 98.1 1E-06 3.5E-11 94.3 2.7 72 543-615 13-87 (380)
148 2ra8_A Uncharacterized protein 98.0 1.1E-06 3.9E-11 93.2 2.3 168 154-342 139-318 (362)
149 4fdw_A Leucine rich hypothetic 98.0 4.9E-06 1.7E-10 89.2 6.6 77 155-244 158-234 (401)
150 1io0_A Tropomodulin; LRR prote 98.0 2.9E-06 1E-10 81.0 4.1 122 153-318 35-166 (185)
151 3rw6_A Nuclear RNA export fact 98.0 5.5E-06 1.9E-10 84.7 5.6 88 152-243 168-258 (267)
152 4fdw_A Leucine rich hypothetic 97.9 8.9E-06 3E-10 87.2 6.0 65 151-223 177-241 (401)
153 2ra8_A Uncharacterized protein 97.5 4.3E-05 1.5E-09 81.1 3.8 158 178-361 136-312 (362)
154 3e4g_A ATP synthase subunit S, 97.5 0.0001 3.4E-09 71.0 5.6 89 152-250 59-153 (176)
155 3e4g_A ATP synthase subunit S, 97.4 5.2E-05 1.8E-09 73.0 2.2 36 181-218 61-96 (176)
156 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0016 5.4E-08 63.7 7.0 64 278-341 99-167 (197)
157 3rfe_A Platelet glycoprotein I 96.0 0.0045 1.5E-07 56.0 3.9 58 158-223 12-71 (130)
158 4fs7_A Uncharacterized protein 95.8 0.0066 2.2E-07 63.8 4.9 56 275-338 318-373 (394)
159 3rfe_A Platelet glycoprotein I 95.7 0.0068 2.3E-07 54.8 3.8 52 277-330 31-83 (130)
160 1pgv_A TMD-1, tropomodulin TMD 95.3 0.02 7E-07 55.8 5.9 84 278-361 71-162 (197)
161 4h09_A Hypothetical leucine ri 95.2 0.021 7.1E-07 59.2 6.2 133 172-338 208-340 (379)
162 4fs7_A Uncharacterized protein 95.1 0.033 1.1E-06 58.4 7.5 150 172-339 62-216 (394)
163 2f69_A Histone-lysine N-methyl 95.1 0.011 3.7E-07 60.2 3.5 64 428-497 185-248 (261)
164 4h09_A Hypothetical leucine ri 94.7 0.032 1.1E-06 57.8 6.0 128 172-333 231-358 (379)
165 3f9x_A Histone-lysine N-methyl 94.6 0.026 8.8E-07 52.8 4.4 49 429-484 107-155 (166)
166 4gt6_A Cell surface protein; l 94.3 0.042 1.5E-06 57.5 5.7 130 172-338 256-385 (394)
167 1n3j_A A612L, histone H3 lysin 93.8 0.028 9.5E-07 49.9 2.7 47 428-483 63-109 (119)
168 4gt6_A Cell surface protein; l 93.8 0.085 2.9E-06 55.2 6.9 125 182-341 243-367 (394)
169 3ope_A Probable histone-lysine 92.0 0.13 4.4E-06 50.7 4.7 48 428-482 145-192 (222)
170 3ooi_A Histone-lysine N-methyl 91.0 0.18 6.3E-06 50.0 4.8 48 428-482 164-211 (232)
171 2w5y_A Histone-lysine N-methyl 90.8 0.2 6.8E-06 48.5 4.6 49 428-483 123-171 (192)
172 3rq4_A Histone-lysine N-methyl 90.8 0.19 6.4E-06 50.7 4.5 47 428-484 175-221 (247)
173 1h3i_A Histone H3 lysine 4 spe 90.4 0.19 6.7E-06 51.2 4.3 49 429-483 240-288 (293)
174 3h6l_A Histone-lysine N-methyl 90.3 0.23 7.7E-06 50.9 4.8 48 428-482 189-236 (278)
175 1ml9_A Histone H3 methyltransf 89.3 0.22 7.4E-06 51.4 3.7 53 428-483 219-271 (302)
176 1mvh_A Cryptic LOCI regulator 89.1 0.33 1.1E-05 50.1 4.9 53 428-483 212-264 (299)
177 3qwp_A SET and MYND domain-con 88.1 0.27 9.4E-06 52.9 3.7 84 395-494 172-255 (429)
178 2r3a_A Histone-lysine N-methyl 87.9 0.33 1.1E-05 50.1 4.0 52 428-482 214-265 (300)
179 3n71_A Histone lysine methyltr 87.8 0.33 1.1E-05 53.2 4.2 94 394-494 169-267 (490)
180 3bo5_A Histone-lysine N-methyl 87.6 0.35 1.2E-05 49.7 3.9 50 428-483 204-253 (290)
181 3hna_A Histone-lysine N-methyl 87.0 0.46 1.6E-05 48.7 4.4 51 428-481 215-265 (287)
182 3s8p_A Histone-lysine N-methyl 86.8 0.36 1.2E-05 49.4 3.4 46 428-483 204-249 (273)
183 3qww_A SET and MYND domain-con 85.4 0.46 1.6E-05 51.3 3.6 75 406-494 181-255 (433)
184 2qpw_A PR domain zinc finger p 83.6 0.77 2.6E-05 42.6 3.7 48 423-481 86-143 (149)
185 2lz0_A Uncharacterized protein 26.0 34 0.0012 29.1 2.4 50 286-342 5-54 (100)
No 1
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.7e-15 Score=150.71 Aligned_cols=174 Identities=22% Similarity=0.258 Sum_probs=132.7
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+.... ...+.
T Consensus 37 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTDNKLQALP-----IGVFD 106 (270)
T ss_dssp TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCSSCCCCCC-----TTTTT
T ss_pred CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCCCcCCcCC-----HhHcc
Confidence 468899999999988 77777889999999999999999876 456788999999999999988665 33567
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+ .|. .....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|
T Consensus 107 ~l~~L~~L~l~~n~l~~--------------~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n 167 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKS--------------LPP---RVFDSLTKLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNN 167 (270)
T ss_dssp TCSSCCEEECCSSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred cccCCCEEECCCCccCe--------------eCH---HHhCcCcCCCEEECCCCcCCccCHhHcc--CCcccceeEecCC
Confidence 88999999887533211 110 1123578899999999999999888887 8899999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|..++ ...+.++++|+.|++..+.. +......+..+++|+.|
T Consensus 168 ~l~~~~----~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 168 QLKRVP----EGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CCSCCC----TTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEE
T ss_pred cCcEeC----hhHhccCCCcCEEECCCCcC-CcCCHHHhccccCCCEE
Confidence 998887 44578889999999887743 22222334556666654
No 2
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=7.8e-15 Score=145.76 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=118.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+.... ...+.
T Consensus 35 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLASLP-----LGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred CCCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccccC-----hhHhc
Confidence 467888999999888 66666778899999999999888876 456788899999999999888654 33467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++..+-. ..|.. ....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|
T Consensus 105 ~l~~L~~L~L~~N~l~--------------~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N 165 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLK--------------SLPSG---VFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTN 165 (251)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred ccCCCCEEEcCCCcCC--------------CcChh---HhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCC
Confidence 7888888888653321 11111 123477888899999999888887776 7888999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.|..+. ...+.++++|+.|++..|.
T Consensus 166 ~l~~~~----~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 166 QLQSVP----HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSCCC----TTTTTTCTTCCEEECCSCC
T ss_pred cCCccC----HHHHhCCCCCCEEEeeCCc
Confidence 888777 3457788888888888775
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=2.1e-14 Score=144.65 Aligned_cols=175 Identities=19% Similarity=0.175 Sum_probs=115.5
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
...+++|++++|.|.. ++...+..+++|+.|+|++|. +..++ ...+.++++|+.|+|++|.+....+ ..
T Consensus 55 ~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~ 124 (285)
T 1ozn_A 55 CRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELGP-----GL 124 (285)
T ss_dssp CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSCCCCCCT-----TT
T ss_pred CCCCCEEECCCCccce---eCHhhcCCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCcCCEECH-----hH
Confidence 3566777777777766 444555667777777777775 66653 2456677777777777777665432 23
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-. ..|. .....+.+|+.|+|++|.|..++...|. .+++|+.|+++
T Consensus 125 ~~~l~~L~~L~l~~n~l~--------------~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~ 185 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQ--------------ALPD---DTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLH 185 (285)
T ss_dssp TTTCTTCCEEECCSSCCC--------------CCCT---TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECC
T ss_pred hhCCcCCCEEECCCCccc--------------ccCH---hHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECC
Confidence 556777777766543211 0110 1123477888888888888888887776 78888888888
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+|.|..+. +..+.++++|+.|++..+..-+ .....+..+++|+.|
T Consensus 186 ~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 186 QNRVAHVH----PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYL 230 (285)
T ss_dssp SSCCCEEC----TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEE
T ss_pred CCcccccC----HhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEE
Confidence 88888775 4567788888888888775322 223456667777665
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=2.5e-14 Score=143.64 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=133.0
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+ ..
T Consensus 59 ~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~ 128 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPP-----RV 128 (270)
T ss_dssp SCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCCT-----TT
T ss_pred CCCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeCH-----HH
Confidence 45789999999999998 78888899999999999999999887 4578899999999999999987653 34
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-. ..|.. ....+.+|+.|+|++|.|..++...|. ++++|+.|+|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~--------------~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~ 189 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQ--------------SLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFD--KLTELKTLKLD 189 (270)
T ss_dssp TTTCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECC
T ss_pred hCcCcCCCEEECCCCcCC--------------ccCHh---HccCCcccceeEecCCcCcEeChhHhc--cCCCcCEEECC
Confidence 678999999998754321 11111 123578999999999999999998887 89999999999
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+|.|..++ ...+..+++|+.|++..|+.
T Consensus 190 ~N~l~~~~----~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 190 NNQLKRVP----EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCC----TTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCcCC----HHHhccccCCCEEEecCCCe
Confidence 99999888 45678899999999998863
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=1.6e-14 Score=145.55 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=137.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCc-ccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Np-i~~~~~~~~~~~il 232 (619)
..+++|++++|+|.. ++...+..+++|+.|+|++|.|..+. ...+.++++|+.|+|++|+ +....+ ..+
T Consensus 32 ~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~ 101 (285)
T 1ozn_A 32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-----ATF 101 (285)
T ss_dssp TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-----TTT
T ss_pred CCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCH-----HHh
Confidence 578899999999998 77777889999999999999999875 4578999999999999998 665542 346
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++.+.-.+ -.| .....+.+|+.|+|++|.|..++...|. .+++|+.|++++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-------------~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~ 162 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQE-------------LGP----GLFRGLAALQYLYLQDNALQALPDDTFR--DLGNLTHLFLHG 162 (285)
T ss_dssp TTCTTCCEEECTTSCCCC-------------CCT----TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS
T ss_pred cCCcCCCEEECCCCcCCE-------------ECH----hHhhCCcCCCEEECCCCcccccCHhHhc--cCCCccEEECCC
Confidence 789999999987543221 011 1123578999999999999999998887 899999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
|.|..+. ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus 163 n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 163 NRISSVP----ERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTL 206 (285)
T ss_dssp SCCCEEC----TTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEE
T ss_pred CcccccC----HHHhcCccccCEEECCCCccccc-CHhHccCcccccEe
Confidence 9999887 44588999999999998764222 12334566777766
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=153.37 Aligned_cols=187 Identities=18% Similarity=0.248 Sum_probs=125.6
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...++.|+|++|.|.. ++...+.++++|+.|+|++|+|+.++ ...+.++++|+.|+|++|++....+ ..
T Consensus 86 ~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~-----~~ 155 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPS-----YA 155 (440)
T ss_dssp SCSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECT-----TT
T ss_pred CCCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeCCCCcccccCH-----HH
Confidence 34678889999999888 67777888999999999999988876 3468889999999999998886552 34
Q ss_pred hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP 299 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~ 299 (619)
+..+++|+.|+++.....+.+. |....+.+ ...| ....+.+|+.|+|++|.|..+++..|.
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 228 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIP-----NLTPLIKLDELDLSGNHLSAIRPGSFQ- 228 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCC-----CCTTCSSCCEEECTTSCCCEECTTTTT-
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-cccc-----ccCCCcccCEEECCCCccCccChhhhc-
Confidence 6678888888776433222111 00111111 0111 133466778888888888877777776
Q ss_pred CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
++++|+.|+|++|.|..+. ...+.++++|+.|++..|..- .-...++..+++|+.|
T Consensus 229 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 229 -GLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284 (440)
T ss_dssp -TCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEE
T ss_pred -cCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEE
Confidence 7788888888888887776 455677788888888776431 1112334455555554
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=3.3e-14 Score=153.08 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=124.0
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...++.|+|++|.|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|++.... ...
T Consensus 97 ~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~-----~~~ 166 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIP-----SYA 166 (452)
T ss_dssp TCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEEC-----TTT
T ss_pred CCCCCCEEECCCCccCC---cChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCCcceeC-----HhH
Confidence 34778899999999888 66677788999999999999988876 456788999999999999888654 234
Q ss_pred hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP 299 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~ 299 (619)
+..+++|+.|+++.....+.+. |....+.+ ..+ .....+.+|+.|+|++|.|..+++..|.
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 239 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-----KDM-PNLTPLVGLEELEMSGNHFPEIRPGSFH- 239 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-----SSC-CCCTTCTTCCEEECTTSCCSEECGGGGT-
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-----ccc-ccccccccccEEECcCCcCcccCccccc-
Confidence 6778888888776432222111 00111111 011 1233466777778888877777776676
Q ss_pred CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
++++|+.|+|++|.|..+. ...+.++++|+.|++..|.. +.-....+..+++|+.|
T Consensus 240 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 240 -GLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp -TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCEE
T ss_pred -CccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcC-CccChHHhccccCCCEE
Confidence 7778888888888777766 34567778888888777643 21112334445555544
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=7e-14 Score=140.70 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=126.5
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|.+++|+|.. ++ -...+++|+.|+|++|.|..++ .+.++++|+.|+|++|.+.... ...+.
T Consensus 41 ~~L~~L~l~~~~i~~---~~--~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~-----~~~~~ 106 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS---VQ--GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLP-----NGVFD 106 (272)
T ss_dssp TTCCEEECTTSCCCC---CT--TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred cceeeeeeCCCCccc---cc--ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccC-----hhHhc
Confidence 678889999999887 22 2467899999999999998864 6789999999999999988655 33467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++..+-.+ .|. .....+.+|+.|+|++|.|..+++..|. .+++|+.|++++|
T Consensus 107 ~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n 167 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQS--------------LPD---GVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYN 167 (272)
T ss_dssp TCTTCCEEECTTSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcCCc--------------cCH---HHhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCC
Confidence 88999999887543221 111 0123477889999999999988888776 7889999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|..+. ...+.++++|+.|++..+..-+. .-..+..+++|+.|
T Consensus 168 ~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 168 QLQSLP----EGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI 210 (272)
T ss_dssp CCCCCC----TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred CcCccC----HHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEE
Confidence 888777 44578888999998887753222 12344556666665
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=5.2e-14 Score=139.79 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=132.6
Q ss_pred eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
.+.++++++++.. +|..+. ++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+..+
T Consensus 16 ~~~l~~~~~~l~~---~p~~~~---~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLDS---VPSGIP---ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDL 82 (251)
T ss_dssp GTEEECTTCCCSS---CCSCCC---TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred CeEEecCCCCccc---cCCCCC---CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCH-----hHhccC
Confidence 4578899999998 775554 68999999999999887 3578999999999999999987653 346789
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
++|+.|+++...-.+ .|. .....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|.|
T Consensus 83 ~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 83 TELGTLGLANNQLAS--------------LPL---GVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQL 143 (251)
T ss_dssp TTCCEEECTTSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCC
T ss_pred CcCCEEECCCCcccc--------------cCh---hHhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCCcC
Confidence 999999987543221 111 1123578999999999999999999887 899999999999999
Q ss_pred CccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 316 EQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 316 ~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
..++ ...+.++++|+.|++..|..-+.. ...+..+++|+.|
T Consensus 144 ~~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 184 (251)
T 3m19_A 144 QSIP----AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTI 184 (251)
T ss_dssp CCCC----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEE
T ss_pred CccC----HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEE
Confidence 9888 456889999999999988642221 2344556666665
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=7.6e-14 Score=140.46 Aligned_cols=156 Identities=24% Similarity=0.263 Sum_probs=127.8
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|.|.. ++ ....+++|+.|+|++|.|+.++ ...+.++++|+.|+|++|.+.... ...+
T Consensus 62 l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~ 129 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD---IS--ALKELTNLTYLILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQSLP-----DGVF 129 (272)
T ss_dssp CTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTT
T ss_pred CCCCcEEECCCCCCCC---ch--hhcCCCCCCEEECCCCccCccC--hhHhcCCcCCCEEECCCCcCCccC-----HHHh
Confidence 4789999999999987 22 4578999999999999999876 456889999999999999998665 3356
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++...-.+ .|. .....+.+|+.|+|++|.|..+++..|. ++++|+.|++++
T Consensus 130 ~~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~ 190 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQS--------------LPK---GVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQ 190 (272)
T ss_dssp TTCTTCCEEECCSSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS
T ss_pred ccCCCCCEEECCCCccCc--------------cCH---HHhccCccCCEEECCCCCcCccCHHHhc--CCccCCEEECCC
Confidence 889999999987543211 111 1123578999999999999999998887 899999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
|.|..+. ...+.++++|+.|++..|..
T Consensus 191 N~l~~~~----~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 191 NQLKSVP----DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCSCCC----TTTTTTCTTCCEEECCSSCB
T ss_pred CcCCccC----HHHHhCCcCCCEEEccCCCc
Confidence 9999887 45688999999999998863
No 11
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=8.9e-14 Score=145.91 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=121.2
Q ss_pred CceeeeecccCCCCccccccccccC-CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSS-KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~-~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|+|++|+|.. ++...+. ++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+.... ...+
T Consensus 39 ~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~ 108 (361)
T 2xot_A 39 SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLHTLD-----EFLF 108 (361)
T ss_dssp TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEEC-----TTTT
T ss_pred CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCCcCC-----HHHh
Confidence 347889999999998 6666665 9999999999999999887 457889999999999999988765 2346
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC-CCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~-~~L~~L~~LnLs 311 (619)
..+++|+.|+++...-.. -.| .....+.+|+.|+|++|.|..+|...|.. ..+++|+.|+|+
T Consensus 109 ~~l~~L~~L~L~~N~i~~-------------~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVV-------------VDR----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp TTCTTCCEEECCSSCCCE-------------ECT----TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCcCCCEEECCCCcccE-------------ECH----HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 788999999887433211 001 12335788999999999999999888742 368999999999
Q ss_pred CCCCCccchHHHHHHHhCCCC--CccccccCCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPC--LQSLGVDIPGP 343 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~--L~sL~ld~p~~ 343 (619)
+|.|..++ ...+..++. |+.|++..|+.
T Consensus 172 ~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 172 SNKLKKLP----LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SSCCCCCC----HHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCCccC----HHHhhhccHhhcceEEecCCCc
Confidence 99999888 445666676 37788877763
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.44 E-value=1.6e-13 Score=140.29 Aligned_cols=154 Identities=21% Similarity=0.208 Sum_probs=111.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. ++...+..+++|+.|+|++|.|+.++.. .++++|+.|+|++|.+..... .+.
T Consensus 31 ~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~------~~~ 97 (290)
T 1p9a_G 31 KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQSLPL------LGQ 97 (290)
T ss_dssp TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEECCSSCCSSCCC------CTT
T ss_pred CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCEEECCCCcCCcCch------hhc
Confidence 456788888888877 5566677888888888888888887632 678888888888888875542 256
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++..+-.+ .|. .....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|
T Consensus 98 ~l~~L~~L~l~~N~l~~--------------l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 158 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTS--------------LPL---GALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLANN 158 (290)
T ss_dssp TCTTCCEEECCSSCCCC--------------CCS---STTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCcCcc--------------cCH---HHHcCCCCCCEEECCCCCCCccChhhcc--cccCCCEEECCCC
Confidence 77888888776433211 110 1123577888888888888888888776 7888888888888
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.|..++ ...+.++++|+.|++..|..
T Consensus 159 ~l~~l~----~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 159 NLTELP----AGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCSCCC----TTTTTTCTTCCEEECCSSCC
T ss_pred cCCccC----HHHhcCcCCCCEEECCCCcC
Confidence 888777 45567788888888877753
No 13
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=5.2e-13 Score=136.37 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=85.6
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|++++|+|.. ++ -...+++|+.|+|++|+|..++. +.++++|+.|+|++|.+.... .+.
T Consensus 46 ~~L~~L~l~~~~i~~---~~--~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~-------~l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS---VQ--GIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLS-------SLK 109 (291)
T ss_dssp HTCCEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGG-------GGT
T ss_pred CcccEEEccCCCccc---Ch--hHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCCh-------hhc
Confidence 456677777777766 22 14556777777777777777653 667777777777777766543 156
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++..+-.. + .....+.+|+.|+|++|.|..++ .+. .+++|+.|++++|
T Consensus 110 ~l~~L~~L~L~~n~i~~------------------~-~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~N 166 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISD------------------I-NGLVHLPQLESLYLGNNKITDIT--VLS--RLTKLDTLSLEDN 166 (291)
T ss_dssp TCTTCCEEECTTSCCCC------------------C-GGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCcCCC------------------C-hhhcCCCCCCEEEccCCcCCcch--hhc--cCCCCCEEEccCC
Confidence 67777777665432211 0 01123556666666666666652 232 5666666666666
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.|.++. . +.++++|+.|+++.|.
T Consensus 167 ~l~~~~----~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 167 QISDIV----P--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCCCCG----G--GTTCTTCCEEECCSSC
T ss_pred ccccch----h--hcCCCccCEEECCCCc
Confidence 666554 1 5566666666666554
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=1.2e-13 Score=135.38 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=43.5
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|..+. ...+..+++|+.|++..|+
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcC--CCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCCCC
Confidence 356777777777777777776666 6777777777777777766 3446667777777776665
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=1.2e-13 Score=140.28 Aligned_cols=170 Identities=21% Similarity=0.199 Sum_probs=100.5
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. +|...+.++++|+.|+|++|.|..+......+.++++|+.|+|++|.+...... +.
T Consensus 28 ~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~------~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN------FL 98 (306)
T ss_dssp TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE------EE
T ss_pred CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh------cC
Confidence 467889999999887 777778889999999999999887654445667788899999998887765421 45
Q ss_pred cCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCcccccc-CcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-LVNKAFSPA 300 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~-Lp~~~f~~~ 300 (619)
.+++|+.|+++...-.+... |....+.+....| .....+.+|+.|+|++|.+.. ..+..|.
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 172 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFT-- 172 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST----TTTTTCTTCCEEECTTCEEGGGEECSCCT--
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch----hhcccCcCCCEEECCCCccccccchhHHh--
Confidence 57777777665432211000 0011110000001 112234556666666666654 2233333
Q ss_pred CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+++|+.|++++|.|..+. +..+.++++|+.|++..+.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSC
T ss_pred hCcCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCc
Confidence 5566666666666665543 2345555666666665554
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=5.8e-13 Score=136.89 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=96.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|.|.+ ++. ...+++|+.|+|++|+|..++ .+.++++|+.|+|++|.+.... .+.
T Consensus 63 ~~L~~L~L~~n~i~~---~~~--~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~-------~l~ 126 (308)
T 1h6u_A 63 NNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVT-------PLA 126 (308)
T ss_dssp TTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCG-------GGT
T ss_pred CCCCEEEccCCcCCC---Chh--HccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCCCCCch-------hhc
Confidence 445555566665555 222 455556666666666655543 3555666666666666555432 045
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+ +. ....+.+|+.|+|++|.|..++. +. .+++|+.|++++|
T Consensus 127 ~l~~L~~L~l~~n~l~~------------------~~-~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n 183 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITN------------------IS-PLAGLTNLQYLSIGNAQVSDLTP--LA--NLSKLTTLKADDN 183 (308)
T ss_dssp TCTTCCEEECCSSCCCC------------------CG-GGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCc------------------Cc-cccCCCCccEEEccCCcCCCChh--hc--CCCCCCEEECCCC
Confidence 55666665554322110 00 12246788888888888888776 44 7888888888888
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|.+++ .+.++++|+.|+++.+..-+.. -+..+++|+.|
T Consensus 184 ~l~~~~------~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L 222 (308)
T 1h6u_A 184 KISDIS------PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIV 222 (308)
T ss_dssp CCCCCG------GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEE
T ss_pred ccCcCh------hhcCCCCCCEEEccCCccCccc---cccCCCCCCEE
Confidence 888776 2678888888888877543222 25666776665
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=148.99 Aligned_cols=174 Identities=22% Similarity=0.185 Sum_probs=130.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. ++...+.++++|+.|+|++|.|..+. ...+.++++|+.|+|++|.+.... ...+.
T Consensus 32 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIP-----LGVFT 101 (477)
T ss_dssp TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCC-----TTSST
T ss_pred CCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCccC-----ccccc
Confidence 467889999999998 66777889999999999999999875 357899999999999999988665 33467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+. .| .....+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~-------------~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n 162 (477)
T 2id5_A 102 GLSNLTKLDISENKIVIL-------------LD----YMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKC 162 (477)
T ss_dssp TCTTCCEEECTTSCCCEE-------------CT----TTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESC
T ss_pred CCCCCCEEECCCCccccC-------------Ch----hHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCC
Confidence 899999999875432210 01 1123577889999999999888887777 8889999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+..+. ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus 163 ~l~~~~----~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 205 (477)
T 2id5_A 163 NLTSIP----TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVL 205 (477)
T ss_dssp CCSSCC----HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEE
T ss_pred cCcccC----hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCccccee
Confidence 888877 56678888888888877653211 11223445555554
No 18
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=2.8e-13 Score=139.02 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=104.1
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHH--hcccccceeecCCCcccccccchhhhHH
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV--TKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l--~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
..+++|++++|+|.. ++...+.++++|+.|+|++|++.........+ .++++|+.|+|++|.+.... .+...+
T Consensus 149 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~ 223 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--GVCSAL 223 (312)
T ss_dssp TTCCEEEEESCSCCC---CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHH
T ss_pred CCCcEEEeeCCCCcc---chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHH
Confidence 567777777777776 56566667788888888888765432223333 77788888888888776443 233455
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-.+. .|. .....+.+|+.|+|++|.|..+|..++ ++|+.|+|+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~-------------~~~---~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls 282 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDA-------------AGA---PSCDWPSQLNSLNLSFTGLKQVPKGLP-----AKLSVLDLS 282 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSS-------------CCC---SCCCCCTTCCEEECTTSCCSSCCSSCC-----SEEEEEECC
T ss_pred HhcCCCCCEEECCCCcCCcc-------------cch---hhhhhcCCCCEEECCCCccChhhhhcc-----CCceEEECC
Confidence 56778888877764332210 000 011235688888888888888876444 678888888
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|+|..++ .+..+++|+.|+++.|.
T Consensus 283 ~N~l~~~p------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 283 YNRLDRNP------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCCSCC------CTTTSCEEEEEECTTCT
T ss_pred CCCCCCCh------hHhhCCCCCEEeccCCC
Confidence 88888775 26778888888887765
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=2.8e-13 Score=138.43 Aligned_cols=169 Identities=22% Similarity=0.205 Sum_probs=134.7
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.+++++++|.. +|..+. ++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+..... .
T Consensus 9 l~~l~~l~~~~~~l~~---ip~~~~---~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-------~ 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA---LPPDLP---KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQV-------D 73 (290)
T ss_dssp STTCCEEECTTSCCSS---CCSCCC---TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEEC-------C
T ss_pred cCCccEEECCCCCCCc---CCCCCC---CCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCccCcccC-------C
Confidence 3567889999999998 776554 78999999999999886 4678999999999999999987752 2
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++...-. ..|. ....+.+|+.|+|++|+|..+|+..|. ++++|+.|+|++
T Consensus 74 ~~l~~L~~L~Ls~N~l~--------------~l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~ 133 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ--------------SLPL----LGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKG 133 (290)
T ss_dssp SCCTTCCEEECCSSCCS--------------SCCC----CTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTT
T ss_pred CCCCcCCEEECCCCcCC--------------cCch----hhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCC
Confidence 67999999998754321 1221 223578999999999999999999897 899999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
|.|..++ ...+.++++|+.|++..|..- .....++..+++|+.|
T Consensus 134 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 134 NELKTLP----PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177 (290)
T ss_dssp SCCCCCC----TTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEE
T ss_pred CCCCccC----hhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEE
Confidence 9999888 456789999999999988642 2112345566777666
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=2e-13 Score=131.34 Aligned_cols=131 Identities=22% Similarity=0.320 Sum_probs=75.0
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.+++|++++|+|.. ++...+..+++|+.|+|++|+|+.++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 29 ~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~- 97 (208)
T 2o6s_A 29 QTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQSLPN-----GVFD- 97 (208)
T ss_dssp TCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT-
T ss_pred CCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCccCH-----hHhc-
Confidence 45555666666555 44444555566666666666555543 2334555666666666665543321 1122
Q ss_pred CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~ 314 (619)
.+.+|+.|+|++|.|..++...|. .+++|+.|++++|.
T Consensus 98 ----------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 98 ----------------------------------------KLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ 135 (208)
T ss_dssp ----------------------------------------TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ----------------------------------------CccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCc
Confidence 355666666666766666666555 66667777777776
Q ss_pred CCccchHHHHHHHhCCCCCccccccCCC
Q 007072 315 LEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|..+. ...+.++++|+.|++..|.
T Consensus 136 l~~~~----~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 136 LKSVP----DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSCCC----TTTTTTCTTCCEEECCSCC
T ss_pred cceeC----HHHhccCCCccEEEecCCC
Confidence 66655 2345666666666666554
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.42 E-value=1.8e-13 Score=147.36 Aligned_cols=189 Identities=18% Similarity=0.164 Sum_probs=135.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+.... ...+.
T Consensus 75 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIP-----SGAFE 144 (452)
T ss_dssp TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSBCC-----TTTSS
T ss_pred CCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCCccC-----hhhhc
Confidence 568899999999998 77777889999999999999999886 468899999999999999998765 33467
Q ss_pred cCCccccccccccccccccccccc--cccc--CC---CCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFC--GEVY--DK---DNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc--~~~~--~~---~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L 305 (619)
.+++|+.|+++...-..--.-.|. ...- +. +.-..+.. ....+.+|+.|+|++|.|..+|. +. .+++|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L 220 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT--PLVGL 220 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CT--TCTTC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--cc--ccccc
Confidence 899999999876433210000000 0000 00 00111111 23357889999999999998864 33 78999
Q ss_pred cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+.|+|++|.|..+. ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus 221 ~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 221 EELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVEL 271 (452)
T ss_dssp CEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred cEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEE
Confidence 99999999998876 46688999999999987764222 12335567777776
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=8.8e-14 Score=144.51 Aligned_cols=176 Identities=19% Similarity=0.166 Sum_probs=110.6
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|+|.. ++...+.++++|+.|+|++|+|+.++ ...+.++++|+.|+|++|++...... ..
T Consensus 74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~----~~ 144 (353)
T 2z80_A 74 RCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGET----SL 144 (353)
T ss_dssp TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSS----CS
T ss_pred cCCCCCEEECCCCccCc---cCHhhcCCCCCCCEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCch----hh
Confidence 35789999999999998 66677789999999999999999876 45689999999999999998866520 23
Q ss_pred hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP 299 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~ 299 (619)
+..+++|+.|+++.....+.+. +...++.+..-.|. ....+.+|+.|+|++|.+..+|...+.
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~- 219 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK----SLKSIQNVSHLILHMKQHILLLEIFVD- 219 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT----TTTTCSEEEEEEEECSCSTTHHHHHHH-
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH----HHhccccCCeecCCCCccccchhhhhh-
Confidence 6788999998886542222110 00111111000111 112344555555555555555544443
Q ss_pred CCCCCCcccccCCCCCCccch---------------------------HHHHHHHhCCCCCccccccCCC
Q 007072 300 AEMPSLSHLNIRGNPLEQNSV---------------------------RELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 300 ~~L~~L~~LnLs~N~i~~i~~---------------------------~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+++|+.|++++|.+..+.. ..++..+.++++|+.|++..|.
T Consensus 220 -~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 220 -VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp -HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred -hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 45566666666665554321 1234456666667776666554
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=1.9e-13 Score=136.94 Aligned_cols=137 Identities=22% Similarity=0.273 Sum_probs=97.0
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLAL-----GAFS 97 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTT
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccCccCh-----hhhc
Confidence 467889999999988 66667788999999999999998876 3568889999999999999887653 3467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~ 312 (619)
.+++|+.|+++.....+. +. .....+.+|+.|+|++|.+..++ +..|. ++++|+.|++++
T Consensus 98 ~l~~L~~L~l~~n~l~~~--------------~~---~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~ 158 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASL--------------EN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS 158 (276)
T ss_dssp TCTTCCEEECTTSCCCCS--------------TT---CCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCS
T ss_pred CCccccEEECCCCCcccc--------------Cc---hhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCC
Confidence 788999888764332210 00 01224566777777777777643 33443 567777777777
Q ss_pred CCCCccc
Q 007072 313 NPLEQNS 319 (619)
Q Consensus 313 N~i~~i~ 319 (619)
|.|..+.
T Consensus 159 N~l~~~~ 165 (276)
T 2z62_A 159 NKIQSIY 165 (276)
T ss_dssp SCCCEEC
T ss_pred CCCCcCC
Confidence 7776655
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=146.88 Aligned_cols=189 Identities=19% Similarity=0.170 Sum_probs=134.6
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 64 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPN-----GAFV 133 (440)
T ss_dssp TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSCCSSCCT-----TTSC
T ss_pred CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCCcCCeeCH-----hHhh
Confidence 567889999999998 77778889999999999999999887 4689999999999999999987653 3467
Q ss_pred cCCcccccccccccccccc--cccccccc--cCC---CCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072 234 GCPKLEIYNSNFTINFGEW--ALGFCGEV--YDK---DNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~--~l~fc~~~--~~~---~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L 305 (619)
.+++|+.|+++...-..-. .+.-+... ++. +.-..+.. ....+.+|+.|+|++|.|..+|. +. .+++|
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L 209 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT--PLIKL 209 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CT--TCSSC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cC--CCccc
Confidence 8999999998754322100 00000000 000 00111111 23357888999999999998874 33 78899
Q ss_pred cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+.|+|++|.|..+. ...+.++++|+.|++..+..-.. ....+..+++|+.|
T Consensus 210 ~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 210 DELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEI 260 (440)
T ss_dssp CEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEE
T ss_pred CEEECCCCccCccC----hhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEE
Confidence 99999999988876 45678889999999887753211 12334566777766
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=134.08 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=45.1
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+.+|+.|+|++|.|..+++..|. .+++|+.|+|++|.|..+. +..+.++++|+.|++..|.
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDNQITTVA----PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTSCCCCBC----TTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCCCcCCEEC----HHHhcCCCCCCEEEecCcC
Confidence 366777777788887777776666 7777888888888777765 3456677777777777665
No 26
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=2.3e-13 Score=153.74 Aligned_cols=192 Identities=20% Similarity=0.209 Sum_probs=130.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|+|++|.|.. ++. ...+++|+.|+|++|.|..++ .+.+|++|+.|+|++|.+.... .+
T Consensus 64 l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~-------~l 127 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDIN-------GL 127 (605)
T ss_dssp CTTCCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCG-------GG
T ss_pred CCCCCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCCc-------cc
Confidence 3567777777777777 232 567777788888888777764 4677777888888888777643 15
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..|++|+.|+++.....+ + .....+.+|+.|+|++|.|..+++ +. ++++|+.|+|++
T Consensus 128 ~~l~~L~~L~Ls~N~l~~------------------l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITD------------------I-TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSK 184 (605)
T ss_dssp GGCTTCSEEECCSSCCCC------------------C-GGGGSCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred cCCCccCEEECCCCccCC------------------c-hhhcccCCCCEEECcCCcCCCchh--hc--cCCCCCEEECcC
Confidence 677788877776433221 1 122357899999999999999877 54 899999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCCCCc--hhHHHhhhcCccccccCccchhh-hccCcceeecccCCCCCCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLNGVTASKI-LEEGKHVIDSMLQPRLPEWS 389 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s~~-~~~~~~~~~~~~~~~~~~~~ 389 (619)
|.|.+++ .+..+++|+.|++..+..... .....+..++.|..++|..++.. +.....+....+...+|.+.
T Consensus 185 N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~ 258 (605)
T 1m9s_A 185 NHISDLR------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258 (605)
T ss_dssp SCCCBCG------GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCC
T ss_pred CCCCCCh------HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceecccccc
Confidence 9998875 478999999999987643211 11233345566777777776642 23344444545555566553
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=3.7e-14 Score=139.41 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=100.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCC-CcccccccchhhhHH
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAI 231 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~~~~~~~~i 231 (619)
..++.|++++|+|.. ++...+..+++|+.|+|++|+ |+.++ ...+.++++|+.|+|++ |.+....+ ..
T Consensus 31 ~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDP-----DA 100 (239)
T ss_dssp TTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECT-----TS
T ss_pred CcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCH-----HH
Confidence 368899999999998 777778889999999999996 98886 34788999999999998 99886653 34
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccc---ccccCcc-ccccCcccccCCCCCCCCc-
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT---SLDLSNR-CIHNLVNKAFSPAEMPSLS- 306 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~---~LdLS~N-~I~~Lp~~~f~~~~L~~L~- 306 (619)
+..+++|+.|+++...-.+ .|. ...+.+|+ .|+|++| .|..+|...|. ++++|+
T Consensus 101 f~~l~~L~~L~l~~n~l~~--------------lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~ 159 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM--------------FPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETL 159 (239)
T ss_dssp EECCTTCCEEEEEEECCCS--------------CCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEE
T ss_pred hCCCCCCCEEeCCCCCCcc--------------ccc-----cccccccccccEEECCCCcchhhcCccccc--chhccee
Confidence 6788999998886543221 111 11233333 5555555 55555555554 555555
Q ss_pred ccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 307 HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 307 ~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
.|++++|.|..++ ...+.. ++|+.|++..+
T Consensus 160 ~L~l~~n~l~~i~----~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 160 TLKLYNNGFTSVQ----GYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCSCCCCEEC----TTTTTT-CEEEEEECTTC
T ss_pred EEEcCCCCCcccC----HhhcCC-CCCCEEEcCCC
Confidence 5555555555544 122333 45555555555
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=1.1e-13 Score=140.54 Aligned_cols=160 Identities=23% Similarity=0.204 Sum_probs=124.7
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.. ++.. +..+++|+.|+|++|.|..++. ...+.++++|+.|+|++|.+.... ...
T Consensus 76 ~~~~L~~L~Ls~n~i~~---l~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-----~~~ 145 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVIT---MSSN-FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAF-----NGI 145 (306)
T ss_dssp SCSCCCEEECCSCSEEE---EEEE-EETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECS-----TTT
T ss_pred cccccCEEECCCCcccc---Chhh-cCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccc-----hhh
Confidence 45789999999999887 4443 5678999999999999988762 246888999999999999987654 234
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-.+. ..| .....+.+|+.|+|++|.|..+++..|. .+++|+.|+++
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~------------~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~ 207 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQEN------------FLP----DIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMS 207 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGG------------EEC----SCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECT
T ss_pred cccCcCCCEEECCCCccccc------------cch----hHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECC
Confidence 67889999998874332110 011 1223578999999999999999887786 89999999999
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+|.|.++. ...+.++++|+.|++..|..
T Consensus 208 ~N~l~~~~----~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 208 HNNFFSLD----TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TSCCSBCC----SGGGTTCTTCCEEECTTSCC
T ss_pred CCccCccC----hhhccCcccCCEeECCCCCC
Confidence 99998887 34578899999999988864
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=3.3e-13 Score=137.83 Aligned_cols=170 Identities=20% Similarity=0.178 Sum_probs=133.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|+|.. ++. ...+++|+.|+|++|+|..++ .+.++++|+.|+|++|.+.... .+
T Consensus 67 l~~L~~L~L~~n~l~~---~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~-------~l 130 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDLS----SLKDLKKLKSLSLEHNGISDIN-------GL 130 (291)
T ss_dssp CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG-------GG
T ss_pred CCCCCEEEccCCccCC---Ccc--cccCCCCCEEECCCCcCCCCh----hhccCCCCCEEECCCCcCCCCh-------hh
Confidence 3789999999999998 333 789999999999999999976 3899999999999999998763 26
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++..+-.+ + .....+.+|+.|+|++|.|..+++ +. .+++|+.|++++
T Consensus 131 ~~l~~L~~L~l~~n~l~~------------------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~--~l~~L~~L~L~~ 187 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITD------------------I-TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSK 187 (291)
T ss_dssp GGCTTCCEEECCSSCCCC------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred cCCCCCCEEEccCCcCCc------------------c-hhhccCCCCCEEEccCCccccchh--hc--CCCccCEEECCC
Confidence 789999999987543221 1 122357899999999999999987 54 899999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhhcCccccccCccch
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~lp~L~~LNg~~~s 367 (619)
|.|.+++ .+.++++|+.|++..+.. ...+....+..++.+..++|..++
T Consensus 188 N~i~~l~------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~ 238 (291)
T 1h6t_A 188 NHISDLR------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238 (291)
T ss_dssp SCCCBCG------GGTTCTTCSEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred CcCCCCh------hhccCCCCCEEECcCCcccCCccccccccEEcceEECCCCCCcC
Confidence 9999876 388999999999987642 111222333445566667776665
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=142.57 Aligned_cols=175 Identities=19% Similarity=0.146 Sum_probs=130.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|++++|+|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+.... ...+.
T Consensus 52 ~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNYLSNLS-----SSWFK 121 (353)
T ss_dssp TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSSCC-----HHHHT
T ss_pred ccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCCcCCcCC-----HhHhC
Confidence 478999999999998 77777889999999999999999875 357899999999999999998654 44578
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccccCcccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
.+++|+.|+++...-.. .|. ......+.+|+.|+|++| .+..+++..|. ++++|+.|++++
T Consensus 122 ~l~~L~~L~L~~n~l~~--------------l~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~ 183 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKT--------------LGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDA 183 (353)
T ss_dssp TCTTCSEEECTTCCCSS--------------SCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEE
T ss_pred CCccCCEEECCCCCCcc--------------cCc--hhhhccCCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCC
Confidence 89999999987543211 111 001224678888888888 57777777776 788888888888
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
|.+..+. +..+.++++|+.|++..+.. +.........+++|+.|
T Consensus 184 n~l~~~~----~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 184 SDLQSYE----PKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEC----TTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEE
T ss_pred CCcCccC----HHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEE
Confidence 8887664 34577788888888877653 33233444556777666
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=2.2e-13 Score=141.41 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=99.4
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+..|+|++|+|.. +|..+.. +++|+.|+|++|.|..++ ..+.++++|+.|+|++|.+.... ..+
T Consensus 80 ~~~l~~L~L~~n~l~~---lp~~l~~-l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~Ls~n~l~~lp------~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ---FPDQAFR-LSHLQHMTIDAAGLMELP---DTMQQFAGLETLTLARNPLRALP------ASI 146 (328)
T ss_dssp STTCCEEEEESSCCSS---CCSCGGG-GTTCSEEEEESSCCCCCC---SCGGGGTTCSEEEEESCCCCCCC------GGG
T ss_pred ccceeEEEccCCCchh---cChhhhh-CCCCCEEECCCCCccchh---HHHhccCCCCEEECCCCccccCc------HHH
Confidence 4678899999999987 6666554 999999999999999776 56789999999999999988543 236
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++.....+.....++... .+ .....+.+|+.|+|++|.|..+|..+. ++++|+.|+|++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~----~~----~~~~~l~~L~~L~L~~n~l~~lp~~l~---~l~~L~~L~L~~ 215 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTD----AS----GEHQGLVNLQSLRLEWTGIRSLPASIA---NLQNLKSLKIRN 215 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-----C----CCEEESTTCCEEEEEEECCCCCCGGGG---GCTTCCEEEEES
T ss_pred hcCcCCCEEECCCCCCccccChhHhhcc----ch----hhhccCCCCCEEECcCCCcCcchHhhc---CCCCCCEEEccC
Confidence 7899999998876443322111111000 00 001124455555555555555544322 455555555555
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
|.|..++ ..+.++++|+.|++..+
T Consensus 216 N~l~~l~-----~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 216 SPLSALG-----PAIHHLPKLEELDLRGC 239 (328)
T ss_dssp SCCCCCC-----GGGGGCTTCCEEECTTC
T ss_pred CCCCcCc-----hhhccCCCCCEEECcCC
Confidence 5555443 12445555555555443
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=3.1e-13 Score=133.13 Aligned_cols=152 Identities=15% Similarity=0.115 Sum_probs=104.7
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
..+.++.+++++.. +|..+. ++|+.|+|++|.|..+. ...+.++++|+.|+|++|.+.... ...+..
T Consensus 20 s~~~v~c~~~~l~~---ip~~~~---~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~~i~-----~~~~~~ 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS---VPAGIP---TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALP-----VGVFDS 86 (229)
T ss_dssp ETTEEECTTSCCSS---CCSCCC---TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC-----TTTTTT
T ss_pred eCCEeEccCCCcCc---cCCCCC---CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCCCCcC-----hhhccc
Confidence 34457777777776 554433 77778888888777764 346777788888888888775543 234566
Q ss_pred CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~ 314 (619)
+++|+.|+++..+-. ..|. .....+.+|+.|+|++|.|..+|..+. .+++|+.|+|++|.
T Consensus 87 l~~L~~L~Ls~N~l~--------------~l~~---~~~~~l~~L~~L~Ls~N~l~~lp~~~~---~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLT--------------VLPS---AVFDRLVHLKELFMCCNKLTELPRGIE---RLTHLTHLALDQNQ 146 (229)
T ss_dssp CTTCCEEECCSSCCC--------------CCCT---TTTTTCTTCCEEECCSSCCCSCCTTGG---GCTTCSEEECCSSC
T ss_pred CCCcCEEECCCCcCC--------------ccCh---hHhCcchhhCeEeccCCcccccCcccc---cCCCCCEEECCCCc
Confidence 777777776643211 0111 112347788899999999998887654 68889999999998
Q ss_pred CCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 315 LEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
|..++ ...+.++++|+.|++..|+.
T Consensus 147 l~~~~----~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 147 LKSIP----HGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCC----TTTTTTCTTCCEEECTTSCB
T ss_pred CCccC----HHHHhCCCCCCEEEeeCCCc
Confidence 88877 35578888888888887753
No 33
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=7.6e-13 Score=135.42 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=26.4
Q ss_pred CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
.+|+.|+|++|+|..+|...+ ++|+.|+|++|.|..++ .+..+++|+.|+++.|
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~-----~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP-----AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC-----SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSST
T ss_pred CcCCEEECCCCCCCchhhhhc-----CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCC
Confidence 355555555555555544322 35555555555555443 1344455555555444
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=3.5e-13 Score=129.23 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=114.0
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|++++|+|.+ ++ -...+++|+.|+|++|.+..++ .+.++++|+.|+|++|.+....+. .+
T Consensus 43 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~-----~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTD---LT--GIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIP-----NL 108 (197)
T ss_dssp HHTCCEEEEESSCCSC---CT--TGGGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGSC-----CC
T ss_pred cCCccEEeccCCCccC---hH--HHhcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeECCccCcccCh-----hh
Confidence 3678899999999987 44 2568899999999999998875 678899999999999998864322 25
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
..+++|+.|+++.++-.+. .| .....+.+|+.|+|++|. +..+| .+. .+++|+.|+++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~-------------~~----~~l~~l~~L~~L~L~~n~~i~~~~--~l~--~l~~L~~L~l~ 167 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDS-------------IL----TKINTLPKVNSIDLSYNGAITDIM--PLK--TLPELKSLNIQ 167 (197)
T ss_dssp TTCTTCCEEECCSSBCBGG-------------GH----HHHTTCSSCCEEECCSCTBCCCCG--GGG--GCSSCCEEECT
T ss_pred cCCCCCCEEEecCCccCcH-------------hH----HHHhhCCCCCEEEccCCCCccccH--hhc--CCCCCCEEECC
Confidence 6789999988875433210 01 112247789999999998 88886 243 78999999999
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|.|.+++ .+.++++|+.|++..|.
T Consensus 168 ~n~i~~~~------~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHDYR------GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCCCT------TGGGCSSCCEEEECBC-
T ss_pred CCCCcChH------HhccCCCCCEEEeeCcc
Confidence 99988765 47788999999888764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.38 E-value=2.5e-13 Score=142.74 Aligned_cols=137 Identities=17% Similarity=0.267 Sum_probs=87.3
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|+++++.|.. +|...+..+++|+.|+|++|.|+.++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQ 114 (390)
T ss_dssp CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCH-----HHhc
Confidence 566777777777777 66666777778888888888777765 3467777788888888877766542 2356
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++..+-. ..|... ...+.+|+.|+|++|.|..+++..|. .+++|+.|++++|
T Consensus 115 ~l~~L~~L~L~~n~l~--------------~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n 175 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS--------------SLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSN 175 (390)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccC--------------cCCHHH---hcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCC
Confidence 6777777777643221 111110 12355666666666666666665554 5666666666666
Q ss_pred CCCccc
Q 007072 314 PLEQNS 319 (619)
Q Consensus 314 ~i~~i~ 319 (619)
.+..++
T Consensus 176 ~l~~~~ 181 (390)
T 3o6n_A 176 RLTHVD 181 (390)
T ss_dssp CCSBCC
T ss_pred cCCccc
Confidence 665554
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.8e-12 Score=133.25 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=129.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|.+++|+|.. ++ -...+++|+.|+|++|.|..++. +.++++|+.|+|++|.+.... .+.
T Consensus 41 ~~L~~L~l~~~~i~~---l~--~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~-------~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT---IE--GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS-------AIA 104 (308)
T ss_dssp HTCCEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred CCcCEEEeeCCCccC---ch--hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch-------hhc
Confidence 678999999999988 33 25689999999999999999874 899999999999999988753 267
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++.+.-.. .+ ....+.+|+.|+|++|.|..++. +. ++++|+.|++++|
T Consensus 105 ~l~~L~~L~l~~n~l~~--------------~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n 161 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD--------------VT-----PLAGLSNLQVLYLDLNQITNISP--LA--GLTNLQYLSIGNA 161 (308)
T ss_dssp TCTTCCEEECTTSCCCC--------------CG-----GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCC--------------ch-----hhcCCCCCCEEECCCCccCcCcc--cc--CCCCccEEEccCC
Confidence 89999999987544321 11 13358899999999999999987 44 8999999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|.++. .+.++++|+.|++..+..-... .+..+++|+.|
T Consensus 162 ~l~~~~------~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L 200 (308)
T 1h6u_A 162 QVSDLT------PLANLSKLTTLKADDNKISDIS---PLASLPNLIEV 200 (308)
T ss_dssp CCCCCG------GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEE
T ss_pred cCCCCh------hhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEE
Confidence 999877 2889999999999988643222 25677777776
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=142.39 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=122.1
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.. ..+....++++|+.|+|++|+|..++.....+.++++|+.|+|++|.+....+ ...
T Consensus 322 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~----~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK----KGD 394 (520)
T ss_dssp SCCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG----GCS
T ss_pred hCCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc----cch
Confidence 45778889999999887 33445578899999999999999887777788999999999999999886221 223
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-.+ ..|. ....+|+.|||++|+|..+|..++ .+++|+.|+|+
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~-------------~~~~------~l~~~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~L~ 452 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTD-------------TIFR------CLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVA 452 (520)
T ss_dssp CCCCTTCCEEECCSSCCCG-------------GGGG------SCCTTCCEEECCSSCCCCCCGGGG---GCTTCCEEECC
T ss_pred hccCccCCEEECcCCCCCc-------------chhh------hhcccCCEEECCCCcccccchhhh---cCCCCCEEECC
Confidence 5678888888887433211 0010 011589999999999999998887 69999999999
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+|.|..++. ..+.++++|+.|++..|+.
T Consensus 453 ~N~l~~l~~----~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 453 SNQLKSVPD----GIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SSCCCCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred CCcCCccCH----HHhccCCcccEEECcCCCC
Confidence 999998882 3578899999999988763
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=9.3e-13 Score=144.63 Aligned_cols=141 Identities=22% Similarity=0.275 Sum_probs=113.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. ++...+.++++|+.|+|++|+|+.++ ..++.+|++|+.|+|++|++.... ...+.
T Consensus 52 ~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~~l~-----~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLA-----LGAFS 121 (635)
T ss_dssp TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEEC-----GGGGT
T ss_pred cCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCCCCC-----HHHhc
Confidence 457899999999998 88888899999999999999999987 467999999999999999988765 34578
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~ 312 (619)
++++|+.|+++..+-.+ .|. .....+.+|+.|+|++|.|..++. ..|. ++++|++|++++
T Consensus 122 ~L~~L~~L~Ls~N~l~~--------------l~~---~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~ 182 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLAS--------------LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS 182 (635)
T ss_dssp TCTTCCEEECTTSCCCC--------------STT---CCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCC--------------CCh---hhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhcccC
Confidence 89999999987543221 111 113358899999999999987653 4555 799999999999
Q ss_pred CCCCccchHHH
Q 007072 313 NPLEQNSVREL 323 (619)
Q Consensus 313 N~i~~i~~~~l 323 (619)
|.|..+....+
T Consensus 183 N~l~~~~~~~l 193 (635)
T 4g8a_A 183 NKIQSIYCTDL 193 (635)
T ss_dssp SCCCEECGGGG
T ss_pred ccccccccccc
Confidence 99988874443
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=5.4e-13 Score=130.79 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=114.8
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.++++++++.. +|..+. ++|+.|+|++|.|+.++ ...+.++++|+.|+|++|.+....++.
T Consensus 14 ~~v~c~~~~l~~---iP~~l~---~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~---------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTE---IPTNLP---ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDA---------- 75 (220)
T ss_dssp TEEECTTSCCSS---CCSSCC---TTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTT----------
T ss_pred CEEEcCCCCcCc---CCCccC---cCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHH----------
Confidence 467889999888 665544 78999999999999887 457889999999999999987664221
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
...+.+|+.|+|++|.|..+|...|. ++++|+.|+|++|.|.
T Consensus 76 ------------------------------------~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 76 ------------------------------------FQGLRSLNSLVLYGNKITELPKSLFE--GLFSLQLLLLNANKIN 117 (220)
T ss_dssp ------------------------------------TTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred ------------------------------------hhCCcCCCEEECCCCcCCccCHhHcc--CCCCCCEEECCCCCCC
Confidence 12477899999999999999999997 8999999999999999
Q ss_pred ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+. ...+.++++|+.|++..|..-+.. ...+..+++|+.|
T Consensus 118 ~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 157 (220)
T 2v9t_B 118 CLR----VDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTM 157 (220)
T ss_dssp CCC----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEE
T ss_pred EeC----HHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEE
Confidence 987 456889999999999988642221 2234455666554
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=1.6e-12 Score=138.64 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|+|++|.|.. +++..+.++++|+.|+|++|.|.........+.++++|+.|+|++|.+....+. .+
T Consensus 77 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 149 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SF 149 (455)
T ss_dssp TCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----GG
T ss_pred ccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----cc
Confidence 34678888888888877 555666778888888888888876432223477788888888888887766432 23
Q ss_pred hhcCCcccccccccc
Q 007072 232 LQGCPKLEIYNSNFT 246 (619)
Q Consensus 232 l~~lP~LeiLn~~~T 246 (619)
+..+++|+.|+++..
T Consensus 150 ~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 150 FLNMRRFHVLDLTFN 164 (455)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred cCCCCcccEEeCCCC
Confidence 566777777776543
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=9.9e-13 Score=147.75 Aligned_cols=186 Identities=21% Similarity=0.241 Sum_probs=113.9
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccch------------------------hhHHHHHhcccc
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETV------------------------EIIVQEVTKLKN 208 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~------------------------~~v~~~l~~L~~ 208 (619)
...+++|++++|.|.. .++...+..+++|+.|+|++|++..+ ......+.++++
T Consensus 404 l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQ--ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp CTTCCEEECCSSCCEE--ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCCEEeCCCCcCcc--ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 4567777777777754 24434445555555555555555443 222334555666
Q ss_pred cceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc
Q 007072 209 LRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC 288 (619)
Q Consensus 209 Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~ 288 (619)
|+.|+|++|.+.... ...+.++++|+.|+++...-.+-+. ...|.........+.+|+.|+|++|.
T Consensus 482 L~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 482 LTILDLSNNNIANIN-----DDMLEGLEKLEILDLQHNNLARLWK---------HANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCGGGGS---------TTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCcCC-----hhhhccccccCEEeCCCCCccccch---------hhccCCcchhhcCCCCCCEEECCCCC
Confidence 666666666655433 2234556666666655332211000 01111111123457889999999999
Q ss_pred cccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhh-hcCccccc
Q 007072 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE-SLPTLCTL 361 (619)
Q Consensus 289 I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~-~lp~L~~L 361 (619)
|..+|...|. ++++|+.|+|++|.|..++ ...+.++++|+.|++..|..-+. ....+. .+++|+.|
T Consensus 548 l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 548 FDEIPVEVFK--DLFELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQKNLITSV-EKKVFGPAFRNLTEL 614 (680)
T ss_dssp CCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCCCBC-CHHHHHHHHTTCSEE
T ss_pred CCCCCHHHcc--cccCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCCCcCCcc-ChhHhcccccccCEE
Confidence 9999988887 8999999999999998888 45678889999999988854222 223333 56776665
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=2.4e-12 Score=132.59 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=115.1
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|+|.. +++..+.++++|+.|+|++|+|..++... .++|+.|+|++|.+.... ...+
T Consensus 77 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~-----~~~~ 143 (332)
T 2ft3_A 77 LQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVP-----KGVF 143 (332)
T ss_dssp CTTCCEEECCSSCCCE---ECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCC-----SGGG
T ss_pred CCCCcEEECCCCccCc---cCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccCccC-----HhHh
Confidence 4567777777777776 44555667777777777777777665221 167777777777776544 2346
Q ss_pred hcCCccccccccccccccc-cc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCC
Q 007072 233 QGCPKLEIYNSNFTINFGE-WA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA 300 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~-~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~ 300 (619)
..+++|+.|+++...-... .. +....+.+ ...|. ....+|+.|+|++|.|..++...|.
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l-~~l~~------~~~~~L~~L~l~~n~i~~~~~~~l~-- 214 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPK------DLPETLNELHLDHNKIQAIELEDLL-- 214 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC-SSCCS------SSCSSCSCCBCCSSCCCCCCTTSST--
T ss_pred CCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC-CccCc------cccCCCCEEECCCCcCCccCHHHhc--
Confidence 7788888887765332110 00 00111111 01111 1225788899999999988877776
Q ss_pred CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+++|+.|+|++|.|..+. ...+.++++|+.|++..+..-... ..+..+++|+.|
T Consensus 215 ~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L 269 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIE----NGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVV 269 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCC----TTGGGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCC----hhHhhCCCCCCEEECCCCcCeecC--hhhhcCccCCEE
Confidence 8899999999999988877 445788899999998877532111 114556666665
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=2.3e-12 Score=132.42 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=99.7
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|.|.. +|..+. ++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+.... .....+
T Consensus 99 l~~L~~L~Ls~n~l~~---l~~~~~---~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~ 167 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE---LPEKMP---KTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSG---IENGAF 167 (330)
T ss_dssp CTTCCEEECCSSCCSB---CCSSCC---TTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGG---BCTTGG
T ss_pred CCCCCEEECCCCcCCc---cChhhc---ccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccC---cChhhc
Confidence 3567777777777766 443332 67777777777777665 456777888888888888775421 223346
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
..+++|+.|+++...-. ..|.. ...+|+.|+|++|.|..+++..|. .+++|+.|+|++
T Consensus 168 ~~l~~L~~L~l~~n~l~--------------~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~ 225 (330)
T 1xku_A 168 QGMKKLSYIRIADTNIT--------------TIPQG------LPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSF 225 (330)
T ss_dssp GGCTTCCEEECCSSCCC--------------SCCSS------CCTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCS
T ss_pred cCCCCcCEEECCCCccc--------------cCCcc------ccccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC
Confidence 67778887777543221 11111 125677777777777777666665 677777777777
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|.|..+. ...+.++++|+.|++..+.
T Consensus 226 n~l~~~~----~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 226 NSISAVD----NGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SCCCEEC----TTTGGGSTTCCEEECCSSC
T ss_pred CcCceeC----hhhccCCCCCCEEECCCCc
Confidence 7777665 3346677777777777664
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=145.44 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=119.6
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...++.|+|++|.|.. +++..+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+ ..
T Consensus 54 ~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~ 123 (477)
T 2id5_A 54 SFPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILLD-----YM 123 (477)
T ss_dssp TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCC--TTSSTTCTTCCEEECTTSCCCEECT-----TT
T ss_pred CCCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCCcCCccC--cccccCCCCCCEEECCCCccccCCh-----hH
Confidence 35789999999999998 66677889999999999999999887 4467899999999999999887653 34
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
+..+++|+.|+++...-.+ -.| .....+.+|+.|+|++|.+..++...|. .+++|+.|+|+
T Consensus 124 ~~~l~~L~~L~l~~n~l~~-------------~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~ 184 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVY-------------ISH----RAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLR 184 (477)
T ss_dssp TTTCTTCCEEEECCTTCCE-------------ECT----TSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEE
T ss_pred ccccccCCEEECCCCccce-------------eCh----hhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCC
Confidence 6789999999887533211 001 1122467888888888888888877776 78888888888
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|.+..+. ...+.++++|+.|++..+.
T Consensus 185 ~n~i~~~~----~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 185 HLNINAIR----DYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp SCCCCEEC----TTCSCSCTTCCEEEEECCT
T ss_pred CCcCcEeC----hhhcccCcccceeeCCCCc
Confidence 88887766 3446677777777776543
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=1.7e-12 Score=136.51 Aligned_cols=189 Identities=19% Similarity=0.125 Sum_probs=99.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|++++|.|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+
T Consensus 92 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~ 161 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-----DTF 161 (390)
T ss_dssp CTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT-----TTT
T ss_pred CCCcCEEECCCCCCCc---CCHHHhcCCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccCh-----hhc
Confidence 3456666666666665 45555556666666666666666554 2334566666666666666554432 224
Q ss_pred hcCCccccccccccccccccccc----------------------------ccccccC---CCCCCcc------------
Q 007072 233 QGCPKLEIYNSNFTINFGEWALG----------------------------FCGEVYD---KDNPSSL------------ 269 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~----------------------------fc~~~~~---~~~p~~l------------ 269 (619)
..+++|+.|+++...-.. +.+. ..++.+. ...+..+
T Consensus 162 ~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 162 QATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp SSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 455555555554322111 0000 0000000 0000000
Q ss_pred ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhH
Q 007072 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI 349 (619)
Q Consensus 270 ~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~ 349 (619)
......+.+|+.|+|++|.|..+++..|. .+++|+.|+|++|.|..++ ..+..+++|+.|++..+..-...
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~n~l~~~~-- 311 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVE-- 311 (390)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECCSSCCCCCG--
T ss_pred cHHHcCCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccC-----cccCCCCCCCEEECCCCcceecC--
Confidence 01122456777777777777777666665 6777777777777777655 12356777777777766432221
Q ss_pred HHhhhcCccccc
Q 007072 350 EILESLPTLCTL 361 (619)
Q Consensus 350 ~il~~lp~L~~L 361 (619)
..+..+++|+.|
T Consensus 312 ~~~~~l~~L~~L 323 (390)
T 3o6n_A 312 RNQPQFDRLENL 323 (390)
T ss_dssp GGHHHHTTCSEE
T ss_pred ccccccCcCCEE
Confidence 113445666555
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=7.8e-13 Score=140.97 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=49.1
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhh
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILES 354 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~ 354 (619)
.+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|..+. ...+.++++|+.|++..|..-+. .-..+..
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 369 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNHIRAL-GDQSFLG 369 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred cCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCccccc-Chhhccc
Confidence 466777777777777777666665 6777777777777776665 34566677777777766543111 1122344
Q ss_pred cCccccc
Q 007072 355 LPTLCTL 361 (619)
Q Consensus 355 lp~L~~L 361 (619)
+++|+.|
T Consensus 370 l~~L~~L 376 (455)
T 3v47_A 370 LPNLKEL 376 (455)
T ss_dssp CTTCCEE
T ss_pred cccccEE
Confidence 5555554
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=6.1e-13 Score=136.76 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|.+++|.|.. ++. ..+++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+. .+..
T Consensus 99 ~~L~~L~l~~n~l~~---~~~---~~~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~ 166 (317)
T 3o53_A 99 PSIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAA 166 (317)
T ss_dssp TTCCEEECCSSCCSE---EEE---CCCSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGG----GGGG
T ss_pred CCcCEEECCCCccCC---cCc---cccCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHH----HHhh
Confidence 455556666666555 221 24678888888888888765 33567788888888888888775422 2345
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+ + .....+.+|+.|+|++|.|..+|+. |. .+++|+.|+|++|
T Consensus 167 ~l~~L~~L~L~~N~l~~------------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N 224 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYD------------------V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN 224 (317)
T ss_dssp GTTTCCEEECTTSCCCE------------------E-ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS
T ss_pred ccCcCCEEECCCCcCcc------------------c-ccccccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCC
Confidence 67888888876433211 1 1112377899999999999998877 43 7899999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNG 363 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg 363 (619)
.|..++ ..+..+++|+.|+++.|.......-..+..+++|+.|+.
T Consensus 225 ~l~~l~-----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 225 KLVLIE-----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp CCCEEC-----TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cccchh-----hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 998766 346788999999998886532223455556666655543
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=2e-12 Score=142.81 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=121.7
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.. ..+....++++|+.|+|++|+|..++.....+.++++|+.|+|++|.+....+ ...
T Consensus 351 ~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~ 423 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----DRT 423 (562)
T ss_dssp SCCCCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----SCC
T ss_pred CCCCceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----hhh
Confidence 45778888999988887 44455678899999999999999887666778889999999999998876221 223
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcC-CcccccccCccccccCcccccCCCCCCCCccccc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL-QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L-~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnL 310 (619)
+..+++|+.|+++...-.+ ..| ..+ .+|+.|+|++|+|..+|...| .+++|+.|+|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~-------------~~~-------~~l~~~L~~L~L~~N~l~~ip~~~~---~l~~L~~L~L 480 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTG-------------SVF-------RCLPPKVKVLDLHNNRIMSIPKDVT---HLQALQELNV 480 (562)
T ss_dssp CCCCTTCCEEECCSSCCCG-------------GGG-------SSCCTTCSEEECCSSCCCCCCTTTT---SSCCCSEEEC
T ss_pred hcCcccCCEEECCCCCCCc-------------chh-------hhhcCcCCEEECCCCcCcccChhhc---CCCCCCEEEC
Confidence 5678888888886433211 001 112 589999999999999998888 6999999999
Q ss_pred CCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 311 s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
++|.|..++. ..+..+++|+.|++..|+.
T Consensus 481 ~~N~l~~l~~----~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 481 ASNQLKSVPD----GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CSSCCCCCCT----TSTTTCTTCCCEECCSCCB
T ss_pred CCCCCCCCCH----HHHhcCCCCCEEEecCCCc
Confidence 9999998882 3478899999999988763
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=8.9e-13 Score=132.10 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=87.6
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|.|.. ++...+.++++|+.|+|++|.+..++. ..+.++++|+.|+|++|.+.... .+..+.
T Consensus 76 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~----l~~~~~ 146 (276)
T 2z62_A 76 SHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK----LPEYFS 146 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCC----CCGGGG
T ss_pred cCCCEEECCCCccCc---cChhhhcCCccccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceec----Cchhhc
Confidence 456666666666655 444555566666666666666665542 13556666666666666655422 112345
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccc----ccccCccccccCcccccCCCCCCCCcccc
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT----SLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~----~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln 309 (619)
.+++|+.|+++..+-.+ .+. .....+.+|+ .|+|++|.|..++...|. ..+|+.|+
T Consensus 147 ~l~~L~~L~Ls~N~l~~--------------~~~---~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~---~~~L~~L~ 206 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQS--------------IYC---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK---EIRLKELA 206 (276)
T ss_dssp GCTTCCEEECCSSCCCE--------------ECG---GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC---SCCEEEEE
T ss_pred cCCCCCEEECCCCCCCc--------------CCH---HHhhhhhhccccceeeecCCCcccccCccccC---CCcccEEE
Confidence 56666666655322110 000 0001122333 677777777777776664 34677777
Q ss_pred cCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+++|.|..++ ...+.++++|+.|++..|.
T Consensus 207 L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 207 LDTNQLKSVP----DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCSCCC----TTTTTTCCSCCEEECCSSC
T ss_pred CCCCceeecC----HhHhcccccccEEEccCCc
Confidence 7777777666 3446677777777777665
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=6.8e-13 Score=148.24 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=46.7
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|++++|.|.. +|...+..+++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 51 ~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 120 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQ 120 (597)
T ss_dssp CCCSEEEESSCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred CCceEEEeeCCCCCC---cCHHHHccCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCCH-----HHHc
Confidence 345556666666655 55555556666666666666666554 2355566666666666666554432 2345
Q ss_pred cCCccccccccc
Q 007072 234 GCPKLEIYNSNF 245 (619)
Q Consensus 234 ~lP~LeiLn~~~ 245 (619)
.+++|+.|+++.
T Consensus 121 ~l~~L~~L~L~~ 132 (597)
T 3oja_B 121 NVPLLTVLVLER 132 (597)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEEeeC
Confidence 566666665543
No 51
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=124.08 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=92.4
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
..+++++++|.. +|..+ .++|+.|+|++|.|+.++ ..+.++++|+.|+|++|.+....++ .+.
T Consensus 13 ~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~n~i~~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~-----~f~--- 75 (193)
T 2wfh_A 13 TVVRCSNKGLKV---LPKGI---PRDVTELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQ-----SFS--- 75 (193)
T ss_dssp TEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCSCC---GGGGGCTTCCEEECCSSCCCCCCTT-----TTT---
T ss_pred CEEEcCCCCCCc---CCCCC---CCCCCEEECCCCcCchhH---HHhhcccCCCEEECCCCcCCEeCHh-----Hcc---
Confidence 468899999988 66544 368999999999999886 5789999999999999998876522 122
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
.+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|.
T Consensus 76 --------------------------------------~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 76 --------------------------------------NMTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDIS 115 (193)
T ss_dssp --------------------------------------TCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred --------------------------------------CCCCCCEEECCCCccCEeCHHHhC--CCCCCCEEECCCCCCC
Confidence 355677777777777777776665 6777777777777777
Q ss_pred ccchHHHHHHHhCCCCCccccccCCC
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.++ ...+.++++|+.|++..|+
T Consensus 116 ~~~----~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 116 VVP----EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCC----TTTTTTCTTCCEEECCSSC
T ss_pred eeC----hhhhhcCccccEEEeCCCC
Confidence 666 3345666777777766664
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=2.1e-12 Score=144.20 Aligned_cols=189 Identities=19% Similarity=0.125 Sum_probs=109.4
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|+|++|.|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+
T Consensus 98 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~ 167 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-----DTF 167 (597)
T ss_dssp CTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT-----TTT
T ss_pred CCCCCEEECCCCcCCC---CCHHHHcCCCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCCh-----hhh
Confidence 3566677777777666 55556666677777777777666655 2345666777777777776655442 234
Q ss_pred hcCCccccccccccccccccccc----------------------------ccccccC---CCCCCcc------------
Q 007072 233 QGCPKLEIYNSNFTINFGEWALG----------------------------FCGEVYD---KDNPSSL------------ 269 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~----------------------------fc~~~~~---~~~p~~l------------ 269 (619)
..+++|+.|+++...-.+ +.++ ..++.+. ...+..+
T Consensus 168 ~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 246 (597)
T ss_dssp TTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred hcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC
Confidence 556666666554332111 0000 0000000 0000000
Q ss_pred ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhH
Q 007072 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI 349 (619)
Q Consensus 270 ~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~ 349 (619)
......+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|..++ ..+..+++|+.|++..|..-...
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i~-- 317 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVE-- 317 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCSSCCCCCG--
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCCCCCCccC--
Confidence 01123567888888898888888777776 7888888888888887765 23456788888888777543221
Q ss_pred HHhhhcCccccc
Q 007072 350 EILESLPTLCTL 361 (619)
Q Consensus 350 ~il~~lp~L~~L 361 (619)
..+..+++|+.|
T Consensus 318 ~~~~~l~~L~~L 329 (597)
T 3oja_B 318 RNQPQFDRLENL 329 (597)
T ss_dssp GGHHHHTTCSEE
T ss_pred cccccCCCCCEE
Confidence 123456666665
No 53
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.5e-12 Score=131.18 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=124.8
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|+|.+ ++ -...+++|+.|+|++|+|..++. +.++++|+.|+|++|.+..... .
T Consensus 40 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~l~~l~~-------~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS---LA--GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNG-------I 103 (263)
T ss_dssp HTTCSEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSCCSCCTT-------C
T ss_pred cCcCcEEECcCCCccc---ch--HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCCCccCCcCc-------c
Confidence 3678899999999988 44 35678999999999999999874 8999999999999999887642 1
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
.. ++|+.|+++..+-.+ + .....+.+|+.|+|++|+|..++ .+. .+++|+.|++++
T Consensus 104 ~~-~~L~~L~L~~N~l~~------------------~-~~l~~l~~L~~L~Ls~N~i~~~~--~l~--~l~~L~~L~L~~ 159 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRD------------------T-DSLIHLKNLEILSIRNNKLKSIV--MLG--FLSKLEVLDLHG 159 (263)
T ss_dssp CC-SSCCEEECCSSCCSB------------------S-GGGTTCTTCCEEECTTSCCCBCG--GGG--GCTTCCEEECTT
T ss_pred cc-CcccEEEccCCccCC------------------C-hhhcCcccccEEECCCCcCCCCh--HHc--cCCCCCEEECCC
Confidence 12 888888887543221 1 11335789999999999999986 344 799999999999
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCCCCCc--hhHHHhhhcCccccccCccch
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s 367 (619)
|.|.++. .+.++++|+.|++..+..... .....+...+.+..++|..+.
T Consensus 160 N~i~~~~------~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l~~l~~~~i~ 210 (263)
T 1xeu_A 160 NEITNTG------GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210 (263)
T ss_dssp SCCCBCT------TSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred CcCcchH------HhccCCCCCEEeCCCCcccCCccccccceEECCeeecCCCCCcC
Confidence 9998874 578899999999876642111 111112234566677776654
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=133.93 Aligned_cols=77 Identities=22% Similarity=0.076 Sum_probs=55.3
Q ss_pred cCCcccccccCccccccC-cccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhh
Q 007072 275 PLQSVTSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE 353 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~L-p~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~ 353 (619)
.+.+|+.||||+|.|..+ |...+.+..+++|++|+|++|.|..++. .-+++|+.|++..|..-+. .++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-------~~~~~L~~L~Ls~N~l~~~---~~~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-------GLPAKLRVLDLSSNRLNRA---PQPD 291 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-------CCCSCCSCEECCSCCCCSC---CCTT
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-------hhcCCCCEEECCCCcCCCC---chhh
Confidence 467899999999999987 5555543345899999999999988762 1148999999988864322 2245
Q ss_pred hcCccccc
Q 007072 354 SLPTLCTL 361 (619)
Q Consensus 354 ~lp~L~~L 361 (619)
.+|+|+.|
T Consensus 292 ~l~~L~~L 299 (310)
T 4glp_A 292 ELPEVDNL 299 (310)
T ss_dssp SCCCCSCE
T ss_pred hCCCccEE
Confidence 56666655
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=1.1e-11 Score=127.44 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=91.5
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...++.|++++|.+.. ++. ...+++|+.|+|++|.+..++. +.++++|+.|++++|.+....+
T Consensus 153 ~l~~L~~L~l~~~~~~~---~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~------- 216 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKD---VTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP------- 216 (347)
T ss_dssp TCTTCCEEECCSSCCCC---CGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-------
T ss_pred hCCCCcEEEecCCCcCC---chh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch-------
Confidence 34678888888888877 222 5678888888888888888763 7778888888888887766541
Q ss_pred hhcCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~ 307 (619)
+..+++|+.|+++...-...-.+..+...-. .+.-..+ .....+.+|+.|+|++|.|..++. |. .+++|+.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~ 291 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISV--LN--NLSQLNS 291 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSE
T ss_pred hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChh--hc--CCCCCCE
Confidence 5667777777765433211000000000000 0000000 012234455555555555555431 22 4555555
Q ss_pred cccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|++++|.+.... ...+.++++|+.|++..+.
T Consensus 292 L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 292 LFLNNNQLGNED----MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EECCSSCCCGGG----HHHHHTCTTCSEEECCSSS
T ss_pred EECcCCcCCCcC----hhHhhccccCCEEEccCCc
Confidence 555555555444 3445555555555555554
No 56
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=3.8e-12 Score=125.33 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=111.5
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~ 260 (619)
...+.++.++|.+..+|.. -.++|+.|+|++|.+....+ ..+..+++|+.|+++..+-.
T Consensus 19 Cs~~~v~c~~~~l~~ip~~-----~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~l~----------- 77 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAG-----IPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQLG----------- 77 (229)
T ss_dssp EETTEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-----------
T ss_pred EeCCEeEccCCCcCccCCC-----CCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCCCC-----------
Confidence 4567899999999999842 23899999999999998753 34678999999998753321
Q ss_pred cCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (619)
Q Consensus 261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~ 340 (619)
..|. .....+.+|+.|+|++|.|..++...|. .+++|+.|+|++|.|..++ ..+.++++|+.|++..
T Consensus 78 ---~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 78 ---ALPV---GVFDSLTQLTVLDLGTNQLTVLPSAVFD--RLVHLKELFMCCNKLTELP-----RGIERLTHLTHLALDQ 144 (229)
T ss_dssp ---CCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCSCC-----TTGGGCTTCSEEECCS
T ss_pred ---CcCh---hhcccCCCcCEEECCCCcCCccChhHhC--cchhhCeEeccCCcccccC-----cccccCCCCCEEECCC
Confidence 1111 1123588999999999999999999887 8999999999999999876 3468999999999998
Q ss_pred CCCCCchhHHHhhhcCccccc
Q 007072 341 PGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 341 p~~l~~~~~~il~~lp~L~~L 361 (619)
|..-.. ....+..+++|+.|
T Consensus 145 N~l~~~-~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 145 NQLKSI-PHGAFDRLSSLTHA 164 (229)
T ss_dssp SCCCCC-CTTTTTTCTTCCEE
T ss_pred CcCCcc-CHHHHhCCCCCCEE
Confidence 854222 12445566666655
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.30 E-value=1.8e-12 Score=141.46 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=93.5
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+.... ...+.
T Consensus 26 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLS-----SSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCSCC-----HHHHT
T ss_pred CCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCccC-----HHHhc
Confidence 457778888888777 55555677788888888888777765 346777888888888888776554 33456
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
.+++|+.|+++...-.+ ...| .....+.+|+.|+|++|. +..+|...|. ++++|++|++++
T Consensus 96 ~l~~L~~L~Ls~n~l~~------------~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~ 157 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQT------------LGVT----SLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKA 157 (549)
T ss_dssp TCTTCCEEECTTCCCSS------------SCSS----CSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEE
T ss_pred cCCCCcEEECCCCcccc------------cchh----hhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccC
Confidence 77788877776433211 0001 012235556666666665 4555555554 566666666666
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
|.+.... +..+.++++|+.|++..+
T Consensus 158 n~l~~~~----~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 158 LSLRNYQ----SQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCEEC----TTTTTTCSEEEEEEEECS
T ss_pred CcccccC----hhhhhccccCceEecccC
Confidence 6655433 233444555555554443
No 58
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.2e-12 Score=117.63 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=97.9
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|++++|+|.+. .+| ..+..+++|+.|+|++|.|..+ ..+.++++|+.|+|++|.+....+. .+
T Consensus 16 ~~~l~~L~l~~n~l~~~-~~~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG-KLE-GLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEV-----LA 84 (149)
T ss_dssp GGGCSEEECTTCBCBTT-BCC-SCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHH-----HH
T ss_pred CccCeEEEccCCcCChh-HHH-HHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHH-----Hh
Confidence 36789999999999831 133 4567899999999999999987 5788999999999999998763211 11
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs 311 (619)
. .+.+|+.|+|++|.|..++. ..+. ++++|++|+++
T Consensus 85 ~-----------------------------------------~l~~L~~L~ls~N~i~~~~~~~~~~--~l~~L~~L~l~ 121 (149)
T 2je0_A 85 E-----------------------------------------KCPNLTHLNLSGNKIKDLSTIEPLK--KLENLKSLDLF 121 (149)
T ss_dssp H-----------------------------------------HCTTCCEEECTTSCCCSHHHHGGGG--GCTTCCEEECT
T ss_pred h-----------------------------------------hCCCCCEEECCCCcCCChHHHHHHh--hCCCCCEEeCc
Confidence 1 25677888888888888763 4554 78999999999
Q ss_pred CCCCCccchHHHHHHHhCCCCCcccccc
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld 339 (619)
+|+|..++. -....+.++++|+.|++.
T Consensus 122 ~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 122 NCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred CCcccchHH-HHHHHHHHCCCcccccCC
Confidence 999887761 001457777777777653
No 59
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=1.4e-12 Score=133.40 Aligned_cols=179 Identities=24% Similarity=0.286 Sum_probs=104.6
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCC-cccccccchhhhHH
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-PVLKKCDHCMEDAI 231 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~N-pi~~~~~~~~~~~i 231 (619)
...++.|++++|.|.. .........+|+|+.|+|++|.+... ....+.++++|+.|+|++| .+... ....+
T Consensus 92 ~~~L~~L~L~~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~~ 163 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEV--STLHGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEF----ALQTL 163 (336)
T ss_dssp CBCCCEEECTTCEECH--HHHHHHHTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHH----HHHHH
T ss_pred CCCCCEEEccCCCcCH--HHHHHHHhhCCCCCEEeCcCcccCHH--HHHHHhcCCCCCEEECCCCCCCCHH----HHHHH
Confidence 3667788888887765 11334456778888888888877643 2456777888888888888 34422 13455
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCC-cccccccCcccc----ccCcccccCCCCCCCCc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ-SVTSLDLSNRCI----HNLVNKAFSPAEMPSLS 306 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~-~L~~LdLS~N~I----~~Lp~~~f~~~~L~~L~ 306 (619)
+..+|+|+.|+++.+.+.+..+ +......+. +|+.|+|++|.+ ..++. .+. .+++|+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~---------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~--~~~~L~ 225 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKH---------------VQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVR--RCPNLV 225 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHH---------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHH--HCTTCS
T ss_pred HhcCCCCCEEcCCCCCCcChHH---------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHh--hCCCCC
Confidence 6778888888776542211100 000111355 677777777743 23333 222 567777
Q ss_pred ccccCCCC-CCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 307 HLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 307 ~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|++++|. +.+.. ...+.++++|+.|++..+..+.......+..+|+|+.|
T Consensus 226 ~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 226 HLDLSDSVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECTTCTTCCGGG----GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEeCCCCCcCCHHH----HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 77777776 44333 23456667777777766653333333345556666665
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=2.2e-12 Score=132.64 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=103.8
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|.|.. ..+..+.++++|+.|+|++|.|.... ...+.++++|+.|+|++|.+....+. .+
T Consensus 100 l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l 169 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSG---AIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPD-----SY 169 (313)
T ss_dssp CTTCSEEEEEEECCEE---ECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCG-----GG
T ss_pred CCCCCEEECcCCeeCC---cCCHHHhCCCCCCEEeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCH-----HH
Confidence 4678899999999886 34455678899999999999888421 25678899999999999998754322 24
Q ss_pred hcCC-cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072 233 QGCP-KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP-~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs 311 (619)
..++ +|+.|+++.....+. .|..+. .+. |+.|+|++|.+...++..|. .+++|+.|+|+
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~-------------~~~~~~----~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~ 229 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGK-------------IPPTFA----NLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLA 229 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEE-------------CCGGGG----GCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECC
T ss_pred hhhhhcCcEEECcCCeeecc-------------CChHHh----CCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECC
Confidence 5666 888888865433211 111111 233 77777777777766666665 67777777777
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|.+.... ..+..+++|+.|++..+.
T Consensus 230 ~N~l~~~~-----~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 230 KNSLAFDL-----GKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SSEECCBG-----GGCCCCTTCCEEECCSSC
T ss_pred CCceeeec-----CcccccCCCCEEECcCCc
Confidence 77765333 125566777777776654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=2.8e-12 Score=133.08 Aligned_cols=158 Identities=22% Similarity=0.283 Sum_probs=100.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh---
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED--- 229 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~--- 229 (619)
...+++|+|++|+|.. +|. ...++++|+.|+|++|.|..++ ..+.++++|+.|+|++|.+....+..+..
T Consensus 103 l~~L~~L~L~~n~l~~---lp~-~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLME---LPD-TMQQFAGLETLTLARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp GTTCSEEEEESSCCCC---CCS-CGGGGTTCSEEEEESCCCCCCC---GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred CCCCCEEECCCCCccc---hhH-HHhccCCCCEEECCCCccccCc---HHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 3678999999999986 553 3478999999999999999776 46899999999999998776654332211
Q ss_pred -HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCccc
Q 007072 230 -AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL 308 (619)
Q Consensus 230 -~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~L 308 (619)
..+..+++|+.|+++..+-. ..|.. ...+.+|+.|+|++|.+..+|.. |. .+++|+.|
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~--------------~lp~~----l~~l~~L~~L~L~~N~l~~l~~~-l~--~l~~L~~L 234 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR--------------SLPAS----IANLQNLKSLKIRNSPLSALGPA-IH--HLPKLEEL 234 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC--------------CCCGG----GGGCTTCCEEEEESSCCCCCCGG-GG--GCTTCCEE
T ss_pred hhhhccCCCCCEEECcCCCcC--------------cchHh----hcCCCCCCEEEccCCCCCcCchh-hc--cCCCCCEE
Confidence 11345899998888653321 11211 11345556666666666655553 22 45556666
Q ss_pred ccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 309 nLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|++|.+.... +..+.++++|+.|++..+.
T Consensus 235 ~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 235 DLRGCTALRNY----PPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp ECTTCTTCCBC----CCCTTCCCCCCEEECTTCT
T ss_pred ECcCCcchhhh----HHHhcCCCCCCEEECCCCC
Confidence 66655543322 2334555555555555543
No 62
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.9e-12 Score=129.08 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=124.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+..+.+++++|.+ ++ ....+++|+.|+|++|.|.+++ .+.++++|+.|+|++|.+....+ +.
T Consensus 19 ~~l~~l~l~~~~i~~---~~--~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~-------l~ 82 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD---LV--SQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP-------LK 82 (263)
T ss_dssp HHHHHHHHTCSCTTS---EE--CHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-------GT
T ss_pred HHHHHHHhcCCCccc---cc--chhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh-------hc
Confidence 345567789999888 33 3468999999999999999986 58899999999999999987652 78
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+ .| . ... .+|+.|+|++|.|..++. +. ++++|+.|++++|
T Consensus 83 ~l~~L~~L~L~~N~l~~--------------l~----~-~~~-~~L~~L~L~~N~l~~~~~--l~--~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKN--------------LN----G-IPS-ACLSRLFLDNNELRDTDS--LI--HLKNLEILSIRNN 138 (263)
T ss_dssp TCSSCCEEECCSSCCSC--------------CT----T-CCC-SSCCEEECCSSCCSBSGG--GT--TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCccCC--------------cC----c-ccc-CcccEEEccCCccCCChh--hc--CcccccEEECCCC
Confidence 89999999987543221 11 1 112 789999999999999863 54 8999999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|.+++ .+.++++|+.|++..|..-.. ..+..+++|+.|
T Consensus 139 ~i~~~~------~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L 177 (263)
T 1xeu_A 139 KLKSIV------MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWI 177 (263)
T ss_dssp CCCBCG------GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEE
T ss_pred cCCCCh------HHccCCCCCEEECCCCcCcch---HHhccCCCCCEE
Confidence 999876 588999999999998864322 345556666655
No 63
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=6.3e-12 Score=142.02 Aligned_cols=160 Identities=24% Similarity=0.265 Sum_probs=128.6
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|.+++|+|.. ++ -...+++|+.|+|++|.|..++. +.+|++|+.|+|++|.+.... .+.
T Consensus 43 ~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~-------~l~ 106 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS---VQ--GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS-------SLK 106 (605)
T ss_dssp TTCCCCBCTTCCCCC---CT--TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCT-------TST
T ss_pred CCCCEEECcCCCCCC---Ch--HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCCh-------hhc
Confidence 568889999999988 33 25789999999999999999874 899999999999999998754 267
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.|++|+.|+++...... + .....+.+|+.|+|++|.|..++ .|. .+++|+.|+|++|
T Consensus 107 ~l~~L~~L~Ls~N~l~~---------------l----~~l~~l~~L~~L~Ls~N~l~~l~--~l~--~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD---------------I----NGLVHLPQLESLYLGNNKITDIT--VLS--RLTKLDTLSLEDN 163 (605)
T ss_dssp TCTTCCEEECTTSCCCC---------------C----GGGGGCTTCSEEECCSSCCCCCG--GGG--SCTTCSEEECCSS
T ss_pred cCCCCCEEEecCCCCCC---------------C----ccccCCCccCEEECCCCccCCch--hhc--ccCCCCEEECcCC
Confidence 89999999987543221 1 11235889999999999999983 344 8999999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.|..+. + +.++++|+.|++..|..-.. ..+..|++|+.|
T Consensus 164 ~l~~~~----~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L 202 (605)
T 1m9s_A 164 QISDIV----P--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVL 202 (605)
T ss_dssp CCCCCG----G--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEE
T ss_pred cCCCch----h--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEE
Confidence 999876 2 89999999999998864322 335667777766
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.29 E-value=2.6e-12 Score=142.13 Aligned_cols=171 Identities=22% Similarity=0.249 Sum_probs=102.3
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.++.|++++|.|.. ++...+..+++|+.|+|++|.|..++ ..+.++++|+.|+|++|.+....+ ..+..
T Consensus 255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~lp---~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANKFENLCQ-----ISASN 323 (606)
T ss_dssp EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCSCCC---SSCCSCTTCCEEECTTCCCSBGGG-----GCGGG
T ss_pred ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccCCCC---hhhcccccCCEEECccCCcCcCch-----hhhhc
Confidence 78899999999988 77777889999999999999999876 357889999999999999886542 34678
Q ss_pred CCccccccccccccccccc---ccccccccC----CCCCCcc---ccCCCcCCcccccccCccccccCcccccCCCCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWA---LGFCGEVYD----KDNPSSL---CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~---l~fc~~~~~----~~~p~~l---~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~ 304 (619)
+|+|+.|+++.....+... +..+...-. .+.-... ......+.+|+.|+|++|.+..+++..|. .+++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~ 401 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQ 401 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCcc
Confidence 8999988887543322111 000000000 0000000 00122344555555555555555554444 4555
Q ss_pred CcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
|+.|++++|.+..... ...+.++++|+.|++..+
T Consensus 402 L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTC
T ss_pred CCeEECCCCcCCCccc---chhhhCcccCCEEECCCC
Confidence 5555555555543320 112445555555555544
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=3.4e-12 Score=131.08 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=119.5
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|.|.. ++...+.++++|+.|+|++|.+...+.....+.++++|+.|+|++|.+..... .
T Consensus 121 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--------~ 189 (330)
T 1xku_A 121 KTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--------G 189 (330)
T ss_dssp TTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--------S
T ss_pred ccccEEECCCCcccc---cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--------c
Confidence 579999999999998 77777889999999999999998755556788999999999999999887642 1
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+ -.|. ....+.+|+.|+|++|.|..++...|. .+++|+.|+|++|
T Consensus 190 ~~~~L~~L~l~~n~l~~-------------~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N 250 (330)
T 1xku_A 190 LPPSLTELHLDGNKITK-------------VDAA----SLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNN 250 (330)
T ss_dssp CCTTCSEEECTTSCCCE-------------ECTG----GGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSS
T ss_pred ccccCCEEECCCCcCCc-------------cCHH----HhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCC
Confidence 23788888876432211 0011 122477888999999999888877776 7889999999999
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.|..++ ..+..+++|+.|++..|.
T Consensus 251 ~l~~lp-----~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 251 KLVKVP-----GGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCSSCC-----TTTTTCSSCCEEECCSSC
T ss_pred cCccCC-----hhhccCCCcCEEECCCCc
Confidence 888766 346788888888888775
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=1.4e-11 Score=126.70 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=90.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|.|.+ ++. +..+++|+.|+|++|.|..++ .+.++++|+.|+|++|.+....+ +.
T Consensus 66 ~~L~~L~l~~n~i~~---~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~l~~n~i~~~~~-------~~ 129 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD---ISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNISDISP-------LA 129 (347)
T ss_dssp TTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECTTSCCCCCGG-------GT
T ss_pred CCccEEEccCCcccc---chh--hhcCCcCCEEEccCCcccCch----HHcCCCcCCEEECcCCcccCchh-------hc
Confidence 456666666666665 232 556666666666666666653 36666666666666666655431 45
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++.....+.. . ....+.+|+.|++++|.+..++. +. .+++|+.|++++|
T Consensus 130 ~l~~L~~L~l~~n~~~~~~--------------~----~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n 187 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDL--------------S----PLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYN 187 (347)
T ss_dssp TCTTCCEEECTTCTTCCCC--------------G----GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTS
T ss_pred cCCceeEEECCCCCCcccc--------------c----chhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCC
Confidence 6666666666543222110 0 12235566666677666666654 33 5666677777776
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+.+++ .+..+++|+.|.+..+..-.... +..+++|+.|
T Consensus 188 ~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L 226 (347)
T 4fmz_A 188 QIEDIS------PLASLTSLHYFTAYVNQITDITP---VANMTRLNSL 226 (347)
T ss_dssp CCCCCG------GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred cccccc------cccCCCccceeecccCCCCCCch---hhcCCcCCEE
Confidence 666655 15566666666666554322111 4445555544
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=1.5e-12 Score=133.89 Aligned_cols=148 Identities=22% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...++.|+|++|+|.. ++...+..+++|+.|+|++|.|..... +.++++|+.|+|++|.+....
T Consensus 33 ~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~l~--------- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL--------- 96 (317)
T ss_dssp GGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEEEEE---------
T ss_pred CCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCcccccc---------
Confidence 3578899999999988 666677899999999999999987763 889999999999999987654
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~ 312 (619)
.+++|+.|+++...-.+ + ....+.+|+.|+|++|.|..+++..|. ++++|+.|++++
T Consensus 97 -~~~~L~~L~l~~n~l~~------------------~--~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~ 153 (317)
T 3o53_A 97 -VGPSIETLHAANNNISR------------------V--SCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKL 153 (317)
T ss_dssp -ECTTCCEEECCSSCCSE------------------E--EECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTT
T ss_pred -CCCCcCEEECCCCccCC------------------c--CccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCC
Confidence 34788888776433211 0 011245667777777777766665554 667777777777
Q ss_pred CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|.|..+.... ....+++|+.|+++.+.
T Consensus 154 N~l~~~~~~~---~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 154 NEIDTVNFAE---LAASSDTLEHLNLQYNF 180 (317)
T ss_dssp SCCCEEEGGG---GGGGTTTCCEEECTTSC
T ss_pred CCCCcccHHH---HhhccCcCCEEECCCCc
Confidence 7766655211 12356666666666654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=2e-12 Score=141.65 Aligned_cols=177 Identities=22% Similarity=0.149 Sum_probs=112.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|+|.. +++..+..+++|+.|+|++|.|..... +.++++|+.|+|++|.+....
T Consensus 34 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~---------- 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL---------- 96 (487)
T ss_dssp GGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEE----------
T ss_pred CCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCC----------
Confidence 478999999999998 666777899999999999999987663 889999999999999988654
Q ss_pred cCCccccccccccccccccc--------ccccccccCCCCCCcc-ccCCCcCCcccccccCccccccCcccccCCCCCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWA--------LGFCGEVYDKDNPSSL-CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~--------l~fc~~~~~~~~p~~l-~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~ 304 (619)
.+|+|+.|+++...-.+... |...++.+ ..+ ......+.+|+.|+|++|.|..+++..|. ..+++
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~ 170 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI-----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDT 170 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCC-----CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTT
T ss_pred CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCC-----CCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCc
Confidence 23777777766433221000 00111111 111 01122456777777777777765553331 14677
Q ss_pred CcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
|+.|+|++|.|..++ .+..+++|+.|+++.|..-+... .+..+++|+.|
T Consensus 171 L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L 219 (487)
T 3oja_A 171 LEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWI 219 (487)
T ss_dssp CCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEE
T ss_pred ccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEE
Confidence 777777777776654 23357777777777665322211 14455666555
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=9.5e-12 Score=135.78 Aligned_cols=181 Identities=18% Similarity=0.157 Sum_probs=92.1
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhH-HHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEII-VQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v-~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|++++|.|.. +|..++..+++|+.|+|++|+|...-.. ...+..+++|+.|+|++|.+....+ ....+
T Consensus 310 ~~L~~L~l~~n~l~~---ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~ 383 (549)
T 2z81_A 310 EKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK---TGEIL 383 (549)
T ss_dssp TTCCEEEEESSCCCC---CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH---HHHHG
T ss_pred ccceEEEeccCcccc---CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc---chhhh
Confidence 456666666666665 5555555666666666666666543211 1124556666666666666654321 01235
Q ss_pred hcCCccccccccccccccccc--c---------cccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072 233 QGCPKLEIYNSNFTINFGEWA--L---------GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~--l---------~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~ 301 (619)
..+++|+.|+++..+-.. +. + ...++.+ ...|. ....+|+.|||++|.|..++ ..
T Consensus 384 ~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l-~~l~~------~~~~~L~~L~Ls~N~l~~~~------~~ 449 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI-RVVKT------CIPQTLEVLDVSNNNLDSFS------LF 449 (549)
T ss_dssp GGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCC-SCCCT------TSCTTCSEEECCSSCCSCCC------CC
T ss_pred hcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCc-ccccc------hhcCCceEEECCCCChhhhc------cc
Confidence 556666666654322110 00 0 0000000 00010 01235666666666665543 16
Q ss_pred CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+++|+.|+|++|.|..++. ...+++|+.|++..|..-+ ..-..+..+++|+.|
T Consensus 450 l~~L~~L~Ls~N~l~~ip~------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPD------ASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKI 502 (549)
T ss_dssp CTTCCEEECCSSCCSSCCC------GGGCTTCCEEECCSSCCCC-CCTTGGGGCTTCCEE
T ss_pred CChhcEEECCCCccCcCCC------cccCccCCEEecCCCccCC-cCHHHHhcCcccCEE
Confidence 7777888888887776661 3457777777777664321 112234445555544
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.28 E-value=3.6e-12 Score=141.03 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.....+ ......+++|+.|+|++|.+..++ ..+.++++|+.|+|++|.+....+. ..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~----~~ 419 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCC-SYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEF----SA 419 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEEC-CHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTT----TT
T ss_pred cCCCCCEEECcCCccCCCcch-hhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccCh----hh
Confidence 446677777777776651101 223345666666666666666554 4555666666666666666554320 12
Q ss_pred hhcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA 300 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~ 300 (619)
+..+++|+.|+++.....+... |...++.+... .+......+.+|+.|+|++|.|..+++..|.
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 494 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQISWGVFD-- 494 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTT--
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCccChhhhc--
Confidence 4455666666555433221100 00000000000 0011223567888888888888877777666
Q ss_pred CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
++++|+.|+|++|.+..+. +..+.++++|+.|++..|..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLD----SSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TCTTCCEEECCSSCCSCEE----GGGTTTCTTCCEEECTTSCC
T ss_pred ccccCCEEECCCCcCCCcC----HHHccCCCcCCEEECCCCcC
Confidence 7888888888888887765 45677788888888877753
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=6e-12 Score=129.60 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=115.3
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|.. +|..+. ++|+.|+|++|.|..++ ...+.++++|+.|+|++|++.... .....
T Consensus 100 ~l~~L~~L~L~~n~l~~---l~~~~~---~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 168 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVE---IPPNLP---SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSG---FEPGA 168 (332)
T ss_dssp TCTTCCEEECCSSCCCS---CCSSCC---TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGG---SCTTS
T ss_pred CcCCCCEEECCCCcCCc---cCcccc---ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCC---CCccc
Confidence 34678889999998887 555444 78888888888888776 345788888888888888886421 11222
Q ss_pred hhcCCcccccccccccccc---cc-----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCC
Q 007072 232 LQGCPKLEIYNSNFTINFG---EW-----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~---~~-----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~ 303 (619)
+..+ +|+.|+++..+-.+ .+ .|...++.+..-.| .....+.+|+.|+|++|.|..+++..|. .++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~ 241 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGHNQIRMIENGSLS--FLP 241 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCT
T ss_pred ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCcCChhHhh--CCC
Confidence 3444 66666664432211 00 01111111111111 1233578999999999999999887776 899
Q ss_pred CCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 304 ~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+|+.|++++|.|..++ ..+.++++|+.|++..|..
T Consensus 242 ~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVP-----AGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp TCCEEECCSSCCCBCC-----TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCeecC-----hhhhcCccCCEEECCCCCC
Confidence 9999999999999776 2478899999999988753
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=9.2e-12 Score=139.86 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=121.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|+|++|+|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 25 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQLSD-----KTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred CCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCccCh-----hhhc
Confidence 578899999999998 77777889999999999999998875 4678999999999999999886652 3467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++.+.-.+ .|. .....+.+|+.|+|++|.+..++...|. ++++|+.|++++|
T Consensus 95 ~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n 155 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQK--------------IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNN 155 (680)
T ss_dssp TCTTCSEEECCSSCCCC--------------CCS---CTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCccCc--------------cCh---hHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCC
Confidence 89999999987543211 110 1123578899999999999888877776 7899999999999
Q ss_pred CCCccchHHHHHHH--hCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVL--KGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l--~~~~~L~sL~ld~p~ 342 (619)
.+..+. ...+ .++++|+.|++..+.
T Consensus 156 ~l~~~~----~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 156 KIQALK----SEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCCCBC----HHHHGGGTTCEESEEECTTCC
T ss_pred cccccC----HHHhhccccccccEEECCCCc
Confidence 888776 2333 356888888887764
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.26 E-value=8e-12 Score=138.23 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=124.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|+|++|.|.. ++...+.++++|+.|+|++|+|..+. ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 33 ~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~ 102 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTANPLIFMAE-----TALS 102 (606)
T ss_dssp TTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCSEECT-----TTTS
T ss_pred CcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeC--hhhccCccccCeeeCCCCcccccCh-----hhhc
Confidence 468899999999998 67777899999999999999998875 4678999999999999999987653 3467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++.+.-.+ . .| .....+.+|+.|+|++|.+..++...+. .+++|+.|++++|
T Consensus 103 ~l~~L~~L~L~~n~i~~-l------------~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n 163 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISS-I------------DF----IPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNN 163 (606)
T ss_dssp SCTTCCEEECTTSCCSC-G------------GG----SCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSS
T ss_pred ccccccEeeccccCccc-C------------Cc----chhccCCcccEEECCCCcccccCccccc--CCcccCEEEcccC
Confidence 89999999987543321 0 01 1123578999999999999988754454 5999999999999
Q ss_pred CCCccchHHHHHHHhCCCCCc--cccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQ--SLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~--sL~ld~p~ 342 (619)
.|..+. ...+.++++|+ +|++..+.
T Consensus 164 ~l~~~~----~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 164 AIHYLS----KEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CCCEEC----HHHHHTTTTCCSEEEECTTCC
T ss_pred cccccC----hhhhhhhcccceeEEecCCCc
Confidence 998887 56788899999 66666554
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.26 E-value=5.2e-12 Score=138.68 Aligned_cols=148 Identities=16% Similarity=0.086 Sum_probs=117.2
Q ss_pred cccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccc
Q 007072 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240 (619)
Q Consensus 161 Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Lei 240 (619)
=++.++.. +|.++. ++++.|+|++|+|+.++ ...+.++++|+.|+|++|.+....+ ..+.++++|+.
T Consensus 38 c~~~~l~~---vP~~lp---~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~-----~~f~~L~~L~~ 104 (635)
T 4g8a_A 38 CMELNFYK---IPDNLP---FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLST 104 (635)
T ss_dssp CTTSCCSS---CCSSSC---TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCE
T ss_pred CCCCCcCc---cCCCCC---cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcCh-----hHhcCCCCCCE
Confidence 34455666 665443 48999999999999987 4579999999999999999987763 35788999999
Q ss_pred cccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccch
Q 007072 241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSV 320 (619)
Q Consensus 241 Ln~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~ 320 (619)
|+++..+-.+ .|. ..+..+.+|+.|+|++|.|..+|+..|. ++++|+.|+|++|.|..+..
T Consensus 105 L~Ls~N~l~~--------------l~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 105 LILTGNPIQS--------------LAL---GAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp EECTTCCCCE--------------ECG---GGGTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCC
T ss_pred EEccCCcCCC--------------CCH---HHhcCCCCCCEEECCCCcCCCCChhhhh--cCcccCeeccccCccccCCC
Confidence 9997543211 111 1123588999999999999999998887 99999999999999987653
Q ss_pred HHHHHHHhCCCCCccccccCCCC
Q 007072 321 RELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 321 ~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+..+.++++|+.|++..|..
T Consensus 166 ---~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 166 ---PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ---CGGGGGCTTCCEEECCSSCC
T ss_pred ---chhhccchhhhhhcccCccc
Confidence 34578899999999988764
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=4.4e-12 Score=124.56 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=106.4
Q ss_pred CCCceeeeecccCC-CCccccccccccCCCCCccEeecCC-CcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072 152 GDGTVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229 (619)
Q Consensus 152 g~~~l~~L~Ls~~~-I~~~~li~l~l~~~~p~L~~L~Ls~-NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~ 229 (619)
+...+++|++++|. |.. ++...+.++++|+.|+|++ |+|+.++ ...+.++++|+.|+|++|.+....+
T Consensus 53 ~l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~~L~l~~n~l~~lp~----- 122 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLKMFPD----- 122 (239)
T ss_dssp TCTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCCEEEEEEECCCSCCC-----
T ss_pred CCCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCCEEeCCCCCCccccc-----
Confidence 34677888888886 777 6666677888888888887 8888776 3467778888888888888776431
Q ss_pred HHhhcCCccc---ccccccccccccccccccccccCCCCCCccccCCCcCCccc-ccccCccccccCcccccCCCCCCCC
Q 007072 230 AILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT-SLDLSNRCIHNLVNKAFSPAEMPSL 305 (619)
Q Consensus 230 ~il~~lP~Le---iLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~-~LdLS~N~I~~Lp~~~f~~~~L~~L 305 (619)
+..+++|+ .|+++.....+ ..|. .....+.+|+ .|+|++|.|..+|...|. . ++|
T Consensus 123 --~~~l~~L~~L~~L~l~~N~~l~-------------~i~~---~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~-~~L 181 (239)
T 2xwt_C 123 --LTKVYSTDIFFILEITDNPYMT-------------SIPV---NAFQGLCNETLTLKLYNNGFTSVQGYAFN--G-TKL 181 (239)
T ss_dssp --CTTCCBCCSEEEEEEESCTTCC-------------EECT---TTTTTTBSSEEEEECCSCCCCEECTTTTT--T-CEE
T ss_pred --cccccccccccEEECCCCcchh-------------hcCc---ccccchhcceeEEEcCCCCCcccCHhhcC--C-CCC
Confidence 45666666 66665321111 0010 0122466777 888888888888777775 3 778
Q ss_pred cccccCCCC-CCccchHHHHHHHhCC-CCCccccccCCCC
Q 007072 306 SHLNIRGNP-LEQNSVRELLEVLKGF-PCLQSLGVDIPGP 343 (619)
Q Consensus 306 ~~LnLs~N~-i~~i~~~~l~~~l~~~-~~L~sL~ld~p~~ 343 (619)
+.|++++|+ |..++ ...+.++ ++|+.|++..+..
T Consensus 182 ~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 182 DAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp EEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCC
T ss_pred CEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCcc
Confidence 888888884 77766 3456777 7888888776653
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=123.75 Aligned_cols=145 Identities=18% Similarity=0.220 Sum_probs=112.3
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.+++++|+|.. +|..+ .+.++.|+|++|.|..++. ...+.++++|+.|+|++|.+....++
T Consensus 14 ~~l~~s~n~l~~---iP~~~---~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~----------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNK---IPEHI---PQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEG----------- 75 (220)
T ss_dssp TEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTT-----------
T ss_pred CEeEeCCCCccc---CccCC---CCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHH-----------
Confidence 468899999888 66544 3467899999999998741 23578999999999999998766521
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
....+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|.
T Consensus 76 -----------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 76 -----------------------------------AFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRIT 118 (220)
T ss_dssp -----------------------------------TTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCCC
T ss_pred -----------------------------------HhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcCC
Confidence 112477899999999999999999897 8999999999999999
Q ss_pred ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+. +..+.++++|+.|++..|..-+.. -..+..+++|+.|
T Consensus 119 ~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 158 (220)
T 2v70_A 119 CVG----NDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTL 158 (220)
T ss_dssp CBC----TTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEE
T ss_pred eEC----HhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEE
Confidence 886 456889999999999988642221 1334456666554
No 77
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=4.1e-12 Score=118.11 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=50.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~ 222 (619)
..++.|++++|+|.+.. +| ..+..+++|+.|+|++|.|..+ ..+.++++|+.|+|++|.+...
T Consensus 24 ~~L~~L~l~~n~l~~~~-i~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK-IE-GLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp TSCSEEECCSCBCBTTB-CS-SCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSC
T ss_pred ccCCEEECCCCCCChhh-HH-HHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchH
Confidence 67889999999988311 33 3467889999999999998887 5678899999999999988764
No 78
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=2.4e-12 Score=132.45 Aligned_cols=172 Identities=14% Similarity=0.140 Sum_probs=108.5
Q ss_pred CCceeeeeccc-CCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhH
Q 007072 153 DGTVKWLELED-ADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (619)
Q Consensus 153 ~~~l~~L~Ls~-~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~ 230 (619)
...+++|++++ |.|.. .+| ..+.++++|++|+|++|.|. .++ ..+.++++|+.|+|++|.+....+ .
T Consensus 75 l~~L~~L~L~~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p-----~ 143 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVG--PIP-PAIAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNALSGTLP-----P 143 (313)
T ss_dssp CTTCSEEEEEEETTEES--CCC-GGGGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCEEECCSSEEESCCC-----G
T ss_pred CCCCCeeeCCCCCcccc--cCC-hhHhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCEEeCCCCccCCcCC-----h
Confidence 35677777774 66665 233 33456777777777777776 333 456777778888888777764332 2
Q ss_pred HhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCC-cccccccCccccccCcccccCCCCCCCCcccc
Q 007072 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ-SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (619)
Q Consensus 231 il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~-~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln 309 (619)
.+..+++|+.|+++...-.+ ..|..+ ..+. +|+.|+|++|.+....+..|. .++ |+.|+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~-------------~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~ 203 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISG-------------AIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVD 203 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEE-------------ECCGGG----GCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEE
T ss_pred HHhcCCCCCeEECcCCcccC-------------cCCHHH----hhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEE
Confidence 35667777777776433211 112222 1344 788889999988855454554 455 88999
Q ss_pred cCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
+++|.|.... +..+.++++|+.|++..+..-+... .+..+++|+.|
T Consensus 204 Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L 249 (313)
T 1ogq_A 204 LSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGL 249 (313)
T ss_dssp CCSSEEEECC----GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEE
T ss_pred CcCCcccCcC----CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEE
Confidence 9999887655 4567888999999988775322211 13445555554
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=5.4e-12 Score=132.02 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=50.7
Q ss_pred CceeeeecccCCCCccccccc----cccCCCC-CccEeecCCCcccchh--hHHHHHhcc-cccceeecCCCcccccccc
Q 007072 154 GTVKWLELEDADIGDDMLLSL----NLSSKFP-DLQALSLCGNKLETVE--IIVQEVTKL-KNLRALWLNNNPVLKKCDH 225 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l----~l~~~~p-~L~~L~Ls~NkL~~~~--~v~~~l~~L-~~Lk~L~Ls~Npi~~~~~~ 225 (619)
..++.|+|++|.|.+ ++. .....+| +|+.|+|++|.|.... .....+.+. ++|+.|+|++|.+......
T Consensus 22 ~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 346777777777776 333 3344666 6777777777776643 222333333 7777777777776654432
Q ss_pred hhhhHHhhcC-Ccccccccccc
Q 007072 226 CMEDAILQGC-PKLEIYNSNFT 246 (619)
Q Consensus 226 ~~~~~il~~l-P~LeiLn~~~T 246 (619)
.+ ...+..+ ++|+.|+++..
T Consensus 99 ~l-~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 99 EL-VKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp HH-HHHHHTSCTTCCEEECCSS
T ss_pred HH-HHHHHhCCCCccEEECcCC
Confidence 22 1223344 66666666543
No 80
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=6.6e-12 Score=120.35 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=84.6
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.|++++++|.. +|..+. ++|+.|+|++|+|..++. ...+.++++|+.|+|++|.+....+. .+..
T Consensus 11 ~~l~~s~~~l~~---ip~~~~---~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~-- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPN-----AFEG-- 76 (192)
T ss_dssp TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTT-----TTTT--
T ss_pred CEEEcCCCCcCc---CccCCC---CCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHh-----HcCC--
Confidence 568899999887 665443 389999999999988762 12478899999999999998766422 1222
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
+.+|+.|+|++|.|..+++..|. .+++|++|+|++|.|.
T Consensus 77 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 77 ---------------------------------------ASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ---------------------------------------CTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCSSCCC
T ss_pred ---------------------------------------cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCC
Confidence 45566666666666666665555 5666666666666665
Q ss_pred ccchHHHHHHHhCCCCCccccccCCC
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+. +..+..+++|+.|++..|.
T Consensus 116 ~~~----~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 116 CVM----PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEC----TTSSTTCTTCCEEECTTCC
T ss_pred eeC----HHHhhcCCCCCEEEeCCCC
Confidence 544 2345556666666665554
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=4.1e-12 Score=139.21 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=95.4
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.+++|++++|.|.. ++. ..+++|+.|+|++|.|..+. ...+.++++|+.|+|++|.+....+. .+...
T Consensus 100 ~L~~L~L~~N~l~~---~~~---~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~ 167 (487)
T 3oja_A 100 SIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAAS 167 (487)
T ss_dssp TCCEEECCSSCCCC---EEE---CCCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGG
T ss_pred CcCEEECcCCcCCC---CCc---cccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChH----HHhhh
Confidence 44455555555544 221 24577777777777777664 23566677777777777777665422 22345
Q ss_pred CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~ 314 (619)
+++|+.|+++...-.+ + .....+.+|+.|+||+|.|..+|+. |. .+++|+.|+|++|.
T Consensus 168 l~~L~~L~Ls~N~l~~------------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYD------------------V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK 225 (487)
T ss_dssp TTTCCEEECTTSCCCE------------------E-ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC
T ss_pred CCcccEEecCCCcccc------------------c-cccccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCCc
Confidence 6777777776433211 0 1112367788888888888888776 33 67888888888888
Q ss_pred CCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 315 LEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
|..++ ..+..+++|+.|++..|..
T Consensus 226 l~~lp-----~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 226 LVLIE-----KALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEEC-----TTCCCCTTCCEEECTTCCB
T ss_pred Ccccc-----hhhccCCCCCEEEcCCCCC
Confidence 87765 2467778888888877753
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=6.9e-12 Score=131.53 Aligned_cols=165 Identities=20% Similarity=0.233 Sum_probs=125.4
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHh-cccccceeecCCCcccccccchhhhHHhhcC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT-KLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~-~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
+.+++++++|.. +|..+. ++++.|+|++|+|..++ ...+. ++++|+.|+|++|.+....+ ..+..+
T Consensus 21 ~~l~c~~~~l~~---iP~~~~---~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPN---VPQSLP---SYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISS-----EAFVPV 87 (361)
T ss_dssp TEEECCSSCCSS---CCSSCC---TTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECT-----TTTTTC
T ss_pred CEEEeCCCCcCc---cCccCC---CCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccCh-----hhccCC
Confidence 468899999988 665543 56899999999999987 34566 89999999999999987763 346789
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
++|+.|+++...-.. .+. ..+..+.+|+.|+|++|.|..+++..|. ++++|+.|+|++|.|
T Consensus 88 ~~L~~L~Ls~N~l~~--------------~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 88 PNLRYLDLSSNHLHT--------------LDE---FLFSDLQALEVLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQNQI 148 (361)
T ss_dssp TTCCEEECCSSCCCE--------------ECT---TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCc--------------CCH---HHhCCCcCCCEEECCCCcccEECHHHhC--CcccCCEEECCCCcC
Confidence 999999987533211 010 1233588999999999999999988887 899999999999999
Q ss_pred CccchHHHHHHH---hCCCCCccccccCCCCCCchhHHHhhhcCcc
Q 007072 316 EQNSVRELLEVL---KGFPCLQSLGVDIPGPLGESAIEILESLPTL 358 (619)
Q Consensus 316 ~~i~~~~l~~~l---~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L 358 (619)
..++ ...+ .++++|+.|++..|..- .-....+..++++
T Consensus 149 ~~l~----~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~ 189 (361)
T 2xot_A 149 SRFP----VELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAW 189 (361)
T ss_dssp CSCC----GGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHH
T ss_pred CeeC----HHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHh
Confidence 9988 3334 67999999999988642 2223445555553
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.1e-11 Score=119.26 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=111.7
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.++.+++++.. +|..+ .++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+.
T Consensus 10 ~~v~c~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 70 (208)
T 2o6s_A 10 TTVECYSQGRTS---VPTGI---PAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNG----------- 70 (208)
T ss_dssp TEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT-----------
T ss_pred CEEEecCCCccC---CCCCC---CCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCccChh-----------
Confidence 356788888877 55443 468999999999999876 45678999999999999987754311
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
....+.+|+.|+|++|.|..++...|. .+++|+.|++++|.|.
T Consensus 71 -----------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 71 -----------------------------------VFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNTNQLQ 113 (208)
T ss_dssp -----------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred -----------------------------------hcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCCCcCc
Confidence 012477899999999999999998887 8999999999999999
Q ss_pred ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
.+. ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus 114 ~~~----~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 114 SLP----DGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI 153 (208)
T ss_dssp CCC----TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred ccC----HhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEE
Confidence 887 45578999999999988753221 12334556666665
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=6.4e-12 Score=118.28 Aligned_cols=132 Identities=23% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|+|.. + ..+...+|+|+.|+|++|.|+.+ ..+.++++|+.|+|++|.+....++ ++
T Consensus 18 ~~~L~~L~l~~n~l~~---i-~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~-----~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---I-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEG-----LD 84 (176)
T ss_dssp TTSCEEEECTTSCCCS---C-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSC-----HH
T ss_pred cCCceEEEeeCCCCch---h-HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcc-----hh
Confidence 3566777777777776 2 23444455777777777777765 3566777777777777776644311 01
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs 311 (619)
. .+.+|+.|+|++|.|..+|. ..+. .+++|+.|+++
T Consensus 85 ~-----------------------------------------~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~ 121 (176)
T 1a9n_A 85 Q-----------------------------------------ALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCIL 121 (176)
T ss_dssp H-----------------------------------------HCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECC
T ss_pred h-----------------------------------------cCCCCCEEECCCCcCCcchhhHhhh--cCCCCCEEEec
Confidence 1 24566677777777777665 3443 67777777777
Q ss_pred CCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
+|++..++... ...+..+++|+.|++..+
T Consensus 122 ~N~i~~~~~~~-~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 RNPVTNKKHYR-LYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SSGGGGSTTHH-HHHHHHCTTCSEETTEEC
T ss_pred CCCCCCcHhHH-HHHHHHCCccceeCCCcC
Confidence 77776555110 123555555555554443
No 85
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.2e-11 Score=116.11 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=86.2
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.+++++++|.. +|..+ .++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+. .+.
T Consensus 10 ~~l~~~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~--- 73 (177)
T 2o6r_A 10 TEIRCNSKGLTS---VPTGI---PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQSLPDG-----VFD--- 73 (177)
T ss_dssp TEEECCSSCCSS---CCTTC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT-----TTT---
T ss_pred CEEEecCCCCcc---CCCCC---CCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceEeChh-----Hcc---
Confidence 467888888887 56443 378999999999998776 44678899999999999987755421 122
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
.+.+|+.|+|++|.|..+|...|. .+++|+.|++++|.|.
T Consensus 74 --------------------------------------~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 74 --------------------------------------KLTKLTILYLHENKLQSLPNGVFD--KLTQLKELALDTNQLK 113 (177)
T ss_dssp --------------------------------------TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCS
T ss_pred --------------------------------------CCCccCEEECCCCCccccCHHHhh--CCcccCEEECcCCcce
Confidence 245666666666666666666555 5666666666666666
Q ss_pred ccchHHHHHHHhCCCCCccccccCCC
Q 007072 317 QNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 317 ~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.++ ...+.++++|+.|++..|.
T Consensus 114 ~~~----~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 114 SVP----DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCC----TTTTTTCTTCCEEECCSSC
T ss_pred EeC----HHHhcCCcccCEEEecCCC
Confidence 655 3345566666666666554
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=8.3e-12 Score=119.60 Aligned_cols=145 Identities=20% Similarity=0.256 Sum_probs=113.1
Q ss_pred CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccc
Q 007072 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (619)
Q Consensus 178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc 257 (619)
..+++|+.|+|++|.|.+++ .+..+++|+.|+|++|.+.... .+..+++|+.|+++...-.+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~n~l~~------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYN-------PISGLSNLERLRIMGKDVTS------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESCCCSCCG-------GGTTCTTCCEEEEECTTCBG-------
T ss_pred hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCCCCCcch-------hhhcCCCCCEEEeECCccCc-------
Confidence 57899999999999999876 4889999999999999776553 26789999999987533221
Q ss_pred ccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC-CCccchHHHHHHHhCCCCCccc
Q 007072 258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSL 336 (619)
Q Consensus 258 ~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL 336 (619)
..|. ....+.+|+.|+|++|.|.......|. .+++|+.|++++|. +.+++ .+.++++|+.|
T Consensus 103 ------~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L 164 (197)
T 4ezg_A 103 ------DKIP----NLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIM------PLKTLPELKSL 164 (197)
T ss_dssp ------GGSC----CCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTBCCCCG------GGGGCSSCCEE
T ss_pred ------ccCh----hhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCCccccH------hhcCCCCCCEE
Confidence 0111 223588999999999999986566666 89999999999998 88876 48899999999
Q ss_pred cccCCCCCCchhHHHhhhcCccccc
Q 007072 337 GVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 337 ~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
++..+..-. ...+..+|+|+.|
T Consensus 165 ~l~~n~i~~---~~~l~~l~~L~~L 186 (197)
T 4ezg_A 165 NIQFDGVHD---YRGIEDFPKLNQL 186 (197)
T ss_dssp ECTTBCCCC---CTTGGGCSSCCEE
T ss_pred ECCCCCCcC---hHHhccCCCCCEE
Confidence 998876422 1245667777766
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=5.1e-12 Score=129.58 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCCceeeeecccCCCCcccccccccc-CCCCCccEeecCCCcccchhhHHHHHhcc-----cccceeecCCCcccccccc
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETVEIIVQEVTKL-----KNLRALWLNNNPVLKKCDH 225 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~-~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L-----~~Lk~L~Ls~Npi~~~~~~ 225 (619)
+...+++|++++|+|.. .+|..++ ..+++|+.|+|++|+|..++ ..+.++ ++|+.|+|++|.+....+.
T Consensus 93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRD---AWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSS---SHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchh---HHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 46789999999999986 4666654 88999999999999999885 445555 8999999999998876532
Q ss_pred hhhhHHhhcCCccccccccccc
Q 007072 226 CMEDAILQGCPKLEIYNSNFTI 247 (619)
Q Consensus 226 ~~~~~il~~lP~LeiLn~~~T~ 247 (619)
.+..+++|+.|+++...
T Consensus 168 -----~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 168 -----QVRVFPALSTLDLSDNP 184 (312)
T ss_dssp -----TCCCCSSCCEEECCSCT
T ss_pred -----HhccCCCCCEEECCCCC
Confidence 35778899988887544
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=6.2e-12 Score=137.45 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=115.0
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. ++...+.++++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 28 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 97 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLAL-----GAFS 97 (570)
T ss_dssp SSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTT
T ss_pred ccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccC--cccccCchhCCEEeCcCCcCCccCH-----hhhc
Confidence 468899999999988 66677789999999999999999876 4578899999999999999887653 3467
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~ 312 (619)
++++|+.|+++.++-.. .|. .....+.+|+.|+|++|.+..++ +..|. ++++|++|++++
T Consensus 98 ~l~~L~~L~L~~n~l~~--------------l~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~l~~ 158 (570)
T 2z63_A 98 GLSSLQKLVAVETNLAS--------------LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS 158 (570)
T ss_dssp TCTTCCEEECTTSCCCC--------------STT---CSCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECTT
T ss_pred Ccccccccccccccccc--------------CCC---ccccccccccEEecCCCccceecChhhhc--ccCCCCEEeCcC
Confidence 89999999987543221 010 01235788999999999988743 34454 789999999999
Q ss_pred CCCCccchHHHHHHHhCCCCC----ccccccCCC
Q 007072 313 NPLEQNSVRELLEVLKGFPCL----QSLGVDIPG 342 (619)
Q Consensus 313 N~i~~i~~~~l~~~l~~~~~L----~sL~ld~p~ 342 (619)
|.+..+.. ..+.++++| .+|++..+.
T Consensus 159 n~l~~~~~----~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 159 NKIQSIYC----TDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp SCCCEECG----GGGHHHHTCTTCCCEEECTTCC
T ss_pred CccceecH----HHccchhccchhhhhcccCCCC
Confidence 98887752 223344444 556655543
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=3e-11 Score=131.41 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|.|.. ++ ...+++|+.|+|++|+|+.++ +.++++|+.|+|++|.+.... +
T Consensus 84 l~~L~~L~Ls~N~l~~---~~---~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~--------l 144 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTN---LD---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID--------V 144 (457)
T ss_dssp CTTCSEEECCSSCCSC---CC---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC--------C
T ss_pred CCCCCEEECcCCCCce---ee---cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec--------c
Confidence 3566777777777666 23 456777777777777777653 567777777777777766543 4
Q ss_pred hcCCcccccccccc
Q 007072 233 QGCPKLEIYNSNFT 246 (619)
Q Consensus 233 ~~lP~LeiLn~~~T 246 (619)
..+++|+.|+++..
T Consensus 145 ~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 145 SHNTQLTELDCHLN 158 (457)
T ss_dssp TTCTTCCEEECTTC
T ss_pred ccCCcCCEEECCCC
Confidence 56667776666544
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1e-11 Score=116.90 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=107.1
Q ss_pred cCCCCCccEeecCCCcccchhhHHHHHhccc-ccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccc
Q 007072 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG 255 (619)
Q Consensus 177 ~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~-~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~ 255 (619)
+..+++|+.|+|++|.|..++ .+.++. +|+.|+|++|.+....
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~----~~~~~~~~L~~L~Ls~N~l~~~~-------------------------------- 58 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE----NLGATLDQFDAIDFSDNEIRKLD-------------------------------- 58 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC----CGGGGTTCCSEEECCSSCCCEEC--------------------------------
T ss_pred cCCcCCceEEEeeCCCCchhH----HhhhcCCCCCEEECCCCCCCccc--------------------------------
Confidence 457899999999999999875 245555 9999999999876542
Q ss_pred ccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcc
Q 007072 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335 (619)
Q Consensus 256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~s 335 (619)
....+.+|+.|+|++|.|..+|+..|. .+++|+.|+|++|.|.+++. ...+.++++|+.
T Consensus 59 ----------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~ 117 (176)
T 1a9n_A 59 ----------------GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGD---LDPLASLKSLTY 117 (176)
T ss_dssp ----------------CCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCE
T ss_pred ----------------ccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCcCCcchh---hHhhhcCCCCCE
Confidence 011367899999999999999988876 89999999999999988762 135789999999
Q ss_pred ccccCCCCCCc--hhHHHhhhcCccccccCccch
Q 007072 336 LGVDIPGPLGE--SAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 336 L~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s 367 (619)
|++..|..-.. +...++..+|+|+.|++....
T Consensus 118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99998864222 224578999999999887765
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.21 E-value=3e-11 Score=133.29 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|+|++|.|.. ++++.+.++++|+.|+|++|+|+.++.. ++++|+.|+|++|.+..... +..
T Consensus 74 ~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~----p~~ 141 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLSFNDFDVLPV----CKE 141 (562)
T ss_dssp TCTTCCEEECCSCCCCE---ECTTTTTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECCSSCCSBCCC----CGG
T ss_pred cCCCccEEECCCCCCCc---CCHHHhCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECCCCCccccCc----hHh
Confidence 34677788888888777 5566667778888888888877777632 67777777777777765430 123
Q ss_pred hhcCCccccccccc
Q 007072 232 LQGCPKLEIYNSNF 245 (619)
Q Consensus 232 l~~lP~LeiLn~~~ 245 (619)
+..+++|+.|+++.
T Consensus 142 ~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 142 FGNLTKLTFLGLSA 155 (562)
T ss_dssp GGGCTTCCEEEEEC
T ss_pred hcccCcccEEecCC
Confidence 45666666666544
No 92
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=6e-12 Score=139.22 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=100.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. ++...+.++++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....++ .+.
T Consensus 32 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQSFSPG-----SFS 101 (606)
T ss_dssp TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCCCCTT-----SST
T ss_pred CCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccccChh-----hcC
Confidence 568889999999988 67777889999999999999998875 35788999999999999998876533 367
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG 312 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~ 312 (619)
.+++|+.|+++.+...+- .|. ....+.+|+.|+|++|.+..+. +..|. ++++|++|++++
T Consensus 102 ~l~~L~~L~L~~n~l~~~-------------~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASL-------------ESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSY 162 (606)
T ss_dssp TCTTCCEEECTTSCCCCS-------------SSS----CCTTCTTCCEEECCSSCCCCCCCCGGGG--TCTTCCEEECCS
T ss_pred CcccCCEEEccCCccccc-------------ccc----ccCCCCCCCEEeCCCCcccceechHhHh--hcCCCCEEEccC
Confidence 889999998875443210 001 1224677788888888877532 23443 678888888888
Q ss_pred CCCCccc
Q 007072 313 NPLEQNS 319 (619)
Q Consensus 313 N~i~~i~ 319 (619)
|.+..+.
T Consensus 163 n~l~~~~ 169 (606)
T 3vq2_A 163 NYIQTIT 169 (606)
T ss_dssp SCCCEEC
T ss_pred CcceecC
Confidence 8777665
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=7.3e-12 Score=136.88 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=100.4
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
+...+++|++++|.|...... ......+++|+.|+|++|.+..++. .+.++++|+.|+|++|.+....+ ...
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l~~~~~----~~~ 416 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSE----FSV 416 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEE-EHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEEESCTT----SCT
T ss_pred cCCCCCEEeCcCCccCccccc-cccccccCccCEEECCCCccccccc---cccccCCCCEEEccCCccccccc----hhh
Confidence 457788889999888761100 2334578888888888888887763 27788888888888888776532 123
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccc--cCcccccCCCCCCCCcccc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH--NLVNKAFSPAEMPSLSHLN 309 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~--~Lp~~~f~~~~L~~L~~Ln 309 (619)
+..+++|+.|+++.....+ ..|. ....+.+|+.|+|++|.+. .+| ..|. .+++|+.|+
T Consensus 417 ~~~l~~L~~L~l~~n~l~~-------------~~~~----~~~~l~~L~~L~l~~n~l~~~~~p-~~~~--~l~~L~~L~ 476 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRV-------------AFNG----IFNGLSSLEVLKMAGNSFQENFLP-DIFT--ELRNLTFLD 476 (570)
T ss_dssp TTTCTTCCEEECTTSCCEE-------------CCTT----TTTTCTTCCEEECTTCEEGGGEEC-SCCT--TCTTCCEEE
T ss_pred hhcCCCCCEEeCcCCcccc-------------cchh----hhhcCCcCcEEECcCCcCccccch-hhhh--cccCCCEEE
Confidence 5678888888876543221 0111 1123566677777777665 243 3333 566777777
Q ss_pred cCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
|++|.+..+. +..+.++++|+.|++..+.
T Consensus 477 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 477 LSQCQLEQLS----PTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CTTSCCCEEC----TTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCC----hhhhhcccCCCEEeCCCCc
Confidence 7777666654 3345666677777666553
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=2.6e-11 Score=124.04 Aligned_cols=184 Identities=21% Similarity=0.202 Sum_probs=129.7
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCC-cccccccchhhh
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNN-PVLKKCDHCMED 229 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~N-pi~~~~~~~~~~ 229 (619)
+...++.|++++|.|.+ ..+.....+++|+.|+|++| .+.... +...+.++++|+.|+|++| .+.... ..
T Consensus 116 ~~~~L~~L~L~~~~l~~---~~~~~l~~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~----~~ 187 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSD---PIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKH----VQ 187 (336)
T ss_dssp TBCCCSEEECTTCBCCH---HHHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHH----HH
T ss_pred hCCCCCEEeCcCcccCH---HHHHHHhcCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCCCCCcChHH----HH
Confidence 34789999999999887 33344556999999999999 677532 3467899999999999999 776432 35
Q ss_pred HHhhcCC-ccccccccccc-ccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCc
Q 007072 230 AILQGCP-KLEIYNSNFTI-NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLS 306 (619)
Q Consensus 230 ~il~~lP-~LeiLn~~~T~-n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~ 306 (619)
.++..+| +|+.|+++... ..+.-. +......+.+|+.|+|++|. ++......+. .+++|+
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~---------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~ 250 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSD---------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQ 250 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHH---------------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCC
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHH---------------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCC
Confidence 5678899 99999987543 111000 00111247799999999999 6543333444 789999
Q ss_pred ccccCCCC-CCccchHHHHHHHhCCCCCccccccCCCCCCchhH-HHhhhcCccccccCccch
Q 007072 307 HLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI-EILESLPTLCTLNGVTAS 367 (619)
Q Consensus 307 ~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~-~il~~lp~L~~LNg~~~s 367 (619)
+|++++|. +.+.. ...+.++++|+.|++..+ ++.... .+...+|+|. +++-.++
T Consensus 251 ~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~-l~~n~l~ 306 (336)
T 2ast_B 251 HLSLSRCYDIIPET----LLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ-INCSHFT 306 (336)
T ss_dssp EEECTTCTTCCGGG----GGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE-ESCCCSC
T ss_pred EeeCCCCCCCCHHH----HHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE-EecccCc
Confidence 99999995 43332 245788999999999987 444443 3445688887 4444444
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=1e-11 Score=115.43 Aligned_cols=134 Identities=20% Similarity=0.169 Sum_probs=93.9
Q ss_pred CCCCccEeecCCCccc--chhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~f 256 (619)
..++|+.|+|++|.|. .++ ..+.++++|+.|+|++|.+.... .+..+++|+.|+++...-.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~Ls~N~l~~------ 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISVS-------NLPKLPKLKKLELSENRIFG------ 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCCS-------SCCCCSSCCEEEEESCCCCS------
T ss_pred CcccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCChh-------hhccCCCCCEEECcCCcCch------
Confidence 4488999999999998 665 34789999999999999988662 25678888888876433221
Q ss_pred cccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcc
Q 007072 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335 (619)
Q Consensus 257 c~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~s 335 (619)
..|. ....+.+|+.|+|++|.|..+|. ..|. .+++|+.|++++|+|..++. -....+.++++|+.
T Consensus 86 -------~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 86 -------GLDM----LAEKLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTY 151 (168)
T ss_dssp -------CCCH----HHHHCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCE
T ss_pred -------HHHH----HHhhCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcE
Confidence 0111 11136778888888888888764 4555 78888888888888876661 00135677777777
Q ss_pred ccccCCC
Q 007072 336 LGVDIPG 342 (619)
Q Consensus 336 L~ld~p~ 342 (619)
|++..+.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 7766553
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.19 E-value=2.4e-11 Score=127.66 Aligned_cols=192 Identities=19% Similarity=0.152 Sum_probs=107.4
Q ss_pred CceeeeecccCCCCccccc-cccccCCCCCccEeecCCCcccchh--hHHHHHhcc---------cccceeecCCCcccc
Q 007072 154 GTVKWLELEDADIGDDMLL-SLNLSSKFPDLQALSLCGNKLETVE--IIVQEVTKL---------KNLRALWLNNNPVLK 221 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li-~l~l~~~~p~L~~L~Ls~NkL~~~~--~v~~~l~~L---------~~Lk~L~Ls~Npi~~ 221 (619)
..+++|+|++|.|...... .......+++|+.|+|++|.|.... .+...+.++ ++|+.|+|++|++..
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 5566666666666552111 1112245666666666666665332 122334444 666666666666552
Q ss_pred cccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCcccc-CCCcCCcccccccCcccc-----ccCccc
Q 007072 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCI-----HNLVNK 295 (619)
Q Consensus 222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I-----~~Lp~~ 295 (619)
..-. .....+..+++|+.|+++..+-.. .++. .+.. ....+.+|+.|+|++|.| ..+|.
T Consensus 174 ~~~~-~l~~~l~~~~~L~~L~L~~n~l~~-~g~~------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~- 238 (386)
T 2ca6_A 174 GSMK-EWAKTFQSHRLLHTVKMVQNGIRP-EGIE------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI- 238 (386)
T ss_dssp GGHH-HHHHHHHHCTTCCEEECCSSCCCH-HHHH------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-
T ss_pred HHHH-HHHHHHHhCCCcCEEECcCCCCCH-hHHH------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-
Confidence 2100 011234556666666655332110 0000 0011 223477899999999998 44554
Q ss_pred ccCCCCCCCCcccccCCCCCCccchHHHHHHHhC--CCCCccccccCCCCCCc----hhHHHhhhcCcccccc
Q 007072 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG--FPCLQSLGVDIPGPLGE----SAIEILESLPTLCTLN 362 (619)
Q Consensus 296 ~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~--~~~L~sL~ld~p~~l~~----~~~~il~~lp~L~~LN 362 (619)
.+. .+++|++|+|++|.|.+.....+...+.. +++|+.|++..|..-.. ....+...+|+|+.|+
T Consensus 239 ~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 239 ALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 333 68899999999999887766666677744 89999999988764221 1122224568877763
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=2.4e-11 Score=127.09 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=126.4
Q ss_pred eecccCCCCccccccccccCCCCCccEeecCCCcccchhh--HHHHHhccc-ccceeecCCCcccccccchhhhHHhhcC
Q 007072 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEI--IVQEVTKLK-NLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 159 L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~--v~~~l~~L~-~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
+.++.|+|.. ..+......++|+.|+|++|.|...+. +...+.+++ +|+.|+|++|.+.......+...+...+
T Consensus 3 ~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 5688888887 444555666779999999999998863 337889999 9999999999998876444433333335
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcC-CcccccccCccccccCcccccC--CCCC-CCCcccccC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL-QSVTSLDLSNRCIHNLVNKAFS--PAEM-PSLSHLNIR 311 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L-~~L~~LdLS~N~I~~Lp~~~f~--~~~L-~~L~~LnLs 311 (619)
++|+.|+++...-...- +..+......+ .+|+.|+|++|.|...+...+. ...+ ++|++|+|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~-------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKS-------------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp TTCCEEECCSSCGGGSC-------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred CCccEEECcCCcCChHH-------------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 99999999764432100 00011001123 5788899999998887764432 1133 588899999
Q ss_pred CCCCCccchHHHHHHHhCCC-CCccccccCCCCCCchh---HHHhhhcC-ccccc
Q 007072 312 GNPLEQNSVRELLEVLKGFP-CLQSLGVDIPGPLGESA---IEILESLP-TLCTL 361 (619)
Q Consensus 312 ~N~i~~i~~~~l~~~l~~~~-~L~sL~ld~p~~l~~~~---~~il~~lp-~L~~L 361 (619)
+|.|.+.....+...+..++ +|++|++..+..-.... ...+..+| +|+.|
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 99888888777777788777 88988888775311111 33444553 66665
No 98
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.18 E-value=3.1e-11 Score=138.93 Aligned_cols=174 Identities=22% Similarity=0.188 Sum_probs=108.0
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|.|.. ..+....++++|+.|+|++|+|.... ...+.++++|+.|+|++|++....+ ..+.
T Consensus 466 ~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~ 535 (768)
T 3rgz_A 466 KTLETLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIP-----AELG 535 (768)
T ss_dssp TTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECC-----GGGG
T ss_pred CCceEEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCC-----HHHc
Confidence 456666677766665 23344556777777777777776321 2456677777777777777765443 2356
Q ss_pred cCCccccccccccccccccc--cc---------ccc--------ccc-------------------------CCCCC---
Q 007072 234 GCPKLEIYNSNFTINFGEWA--LG---------FCG--------EVY-------------------------DKDNP--- 266 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~--l~---------fc~--------~~~-------------------------~~~~p--- 266 (619)
.+++|+.|+++...-.+.+- +. +.. +.. ....+
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 77888877775433222110 00 000 000 00000
Q ss_pred ------CccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072 267 ------SSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (619)
Q Consensus 267 ------~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~ 340 (619)
+.+......+.+|+.||||+|.+....+..|. ++++|+.|+|++|.|...- +..+.++++|++|++..
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~i----p~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG--GCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCS
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHh--ccccCCEEeCcCCccCCCC----ChHHhCCCCCCEEECCC
Confidence 00001223467899999999999955555555 7999999999999997433 46789999999999988
Q ss_pred CCC
Q 007072 341 PGP 343 (619)
Q Consensus 341 p~~ 343 (619)
|..
T Consensus 690 N~l 692 (768)
T 3rgz_A 690 NKL 692 (768)
T ss_dssp SCC
T ss_pred Ccc
Confidence 864
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.18 E-value=1.3e-10 Score=125.48 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=75.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|++++|.|.. ++ ....+++|+.|+|++|.+..+.. +..+++|+.|+|++|.+.... .+.
T Consensus 177 ~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-------~l~ 240 (466)
T 1o6v_A 177 TTLERLDISSNKVSD---IS--VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIG-------TLA 240 (466)
T ss_dssp TTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG-------GGG
T ss_pred CCCCEEECcCCcCCC---Ch--hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccch-------hhh
Confidence 456666666666555 11 23456666666666666665542 455666666666666655432 144
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++...-.+.. ....+.+|+.|+|++|.+..++. +. .+++|+.|++++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~-------------------~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n 297 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLA-------------------PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNEN 297 (466)
T ss_dssp GCTTCSEEECCSSCCCCCG-------------------GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCccccch-------------------hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCC
Confidence 5666666665532221100 01234455555555555555544 22 4555555555555
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+..+. .+..+++|+.|++..+.
T Consensus 298 ~l~~~~------~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 298 QLEDIS------PISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCSCCG------GGGGCTTCSEEECCSSC
T ss_pred cccCch------hhcCCCCCCEEECcCCc
Confidence 555544 14555555555555543
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=1e-10 Score=126.23 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=60.4
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|.|.. +.+ ...+++|+.|+|++|.+..++ .+.++++|+.|+|++|.+....+ +
T Consensus 198 l~~L~~L~l~~n~l~~--~~~---~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------~ 261 (466)
T 1o6v_A 198 LTNLESLIATNNQISD--ITP---LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP-------L 261 (466)
T ss_dssp CTTCSEEECCSSCCCC--CGG---GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-------G
T ss_pred CCCCCEEEecCCcccc--ccc---ccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccccchh-------h
Confidence 4678899999999887 333 456888999999999888874 57788888889998888876541 5
Q ss_pred hcCCcccccccccc
Q 007072 233 QGCPKLEIYNSNFT 246 (619)
Q Consensus 233 ~~lP~LeiLn~~~T 246 (619)
..+++|+.|+++..
T Consensus 262 ~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 262 SGLTKLTELKLGAN 275 (466)
T ss_dssp TTCTTCSEEECCSS
T ss_pred hcCCCCCEEECCCC
Confidence 67888888887653
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.9e-11 Score=116.36 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=98.4
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. +| ..+..+++|+.|+|++|.|+.++ ...+.++++|+.|+|++|.+....++
T Consensus 31 ~~l~~L~L~~n~i~~---ip-~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~-------- 96 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL---VP-KELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRCIPPR-------- 96 (193)
T ss_dssp TTCCEEECCSSCCCS---CC-GGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTT--------
T ss_pred CCCCEEECCCCcCch---hH-HHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCccCEeCHH--------
Confidence 468899999999987 66 56789999999999999999987 46789999999999999998876522
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|
T Consensus 97 --------------------------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 136 (193)
T 2wfh_A 97 --------------------------------------TFDGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGAN 136 (193)
T ss_dssp --------------------------------------TTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSS
T ss_pred --------------------------------------HhCCCCCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCC
Confidence 112477899999999999999999897 8999999999999
Q ss_pred CCC-ccchHHHHHHH
Q 007072 314 PLE-QNSVRELLEVL 327 (619)
Q Consensus 314 ~i~-~i~~~~l~~~l 327 (619)
++. +-....+..++
T Consensus 137 ~~~C~c~l~~l~~~~ 151 (193)
T 2wfh_A 137 PLYCDCNMQWLSDWV 151 (193)
T ss_dssp CEECSGGGHHHHHHH
T ss_pred CeecCCcCHHHHHHH
Confidence 983 33333344443
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.15 E-value=9.2e-12 Score=130.83 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=131.4
Q ss_pred CCceeeeecccCCCCcccccccccc---CCC---------CCccEeecCCCccc--chhhHHHHHhcccccceeecCCCc
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLS---SKF---------PDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNP 218 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~---~~~---------p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Np 218 (619)
...+++|+|++|+|... .+..+. ..+ ++|+.|+|++|.|. .++.....+.++++|+.|+|++|.
T Consensus 121 ~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp CTTCCEEECCSSCCHHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCCCCHH--HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 47899999999999761 111111 223 99999999999996 555555789999999999999999
Q ss_pred ccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc----
Q 007072 219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN---- 294 (619)
Q Consensus 219 i~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~---- 294 (619)
+....-..+.+..+..+++|+.|+++...-. ..+.. .+......+.+|+.|+|++|.|.....
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-~~g~~------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-HLGSS------------ALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-HHHHH------------HHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCCCC-cHHHH------------HHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 8743211233335678999999998754321 00000 000112246789999999999986522
Q ss_pred cccCCCCCCCCcccccCCCCCCccchHHHHHHH-hCCCCCccccccCCCCCCch--hHHHhhhcCccc
Q 007072 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVL-KGFPCLQSLGVDIPGPLGES--AIEILESLPTLC 359 (619)
Q Consensus 295 ~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l-~~~~~L~sL~ld~p~~l~~~--~~~il~~lp~L~ 359 (619)
..+....+++|++|+|++|.|....+..++..+ .++++|+.|++..|..-+.. ...+...+|+++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 222112489999999999999886555566666 77999999999988653333 255556666654
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=4.4e-11 Score=114.56 Aligned_cols=110 Identities=25% Similarity=0.368 Sum_probs=93.8
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.++.|++++|.|.. +.+...+..+++|+.|+|++|+|+.+. ...+.++++|+.|+|++|.+....+.
T Consensus 30 ~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~--------- 96 (192)
T 1w8a_A 30 HTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQLGENKIKEISNK--------- 96 (192)
T ss_dssp TCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSCCCCEECSS---------
T ss_pred CCCEEECCCCcCCc--cCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEECCCCcCCccCHH---------
Confidence 78899999999998 333356889999999999999999885 46789999999999999998766521
Q ss_pred CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~ 314 (619)
....+.+|+.|+|++|.|..+++..|. .+++|++|+|++|+
T Consensus 97 -------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 -------------------------------------MFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNP 137 (192)
T ss_dssp -------------------------------------SSTTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCC
T ss_pred -------------------------------------HhcCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCC
Confidence 112377899999999999999888887 89999999999999
Q ss_pred CC
Q 007072 315 LE 316 (619)
Q Consensus 315 i~ 316 (619)
+.
T Consensus 138 l~ 139 (192)
T 1w8a_A 138 FN 139 (192)
T ss_dssp BC
T ss_pred cc
Confidence 85
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=6.3e-11 Score=111.17 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=95.1
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|++++|+|.. ++...+..+++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+.
T Consensus 28 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~-------- 94 (177)
T 2o6r_A 28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENKLQSLPNG-------- 94 (177)
T ss_dssp TTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred CCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEECCCCCccccCHH--------
Confidence 578999999999998 77777889999999999999999886 45678999999999999997755421
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
....+.+|+.|+|++|.|..+|...|. .+++|++|++++|
T Consensus 95 --------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N 134 (177)
T 2o6r_A 95 --------------------------------------VFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 134 (177)
T ss_dssp --------------------------------------TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred --------------------------------------HhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCC
Confidence 012367899999999999999998887 8999999999999
Q ss_pred CCCc
Q 007072 314 PLEQ 317 (619)
Q Consensus 314 ~i~~ 317 (619)
++..
T Consensus 135 ~~~~ 138 (177)
T 2o6r_A 135 PWDC 138 (177)
T ss_dssp CBCC
T ss_pred Ceec
Confidence 9864
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=2.1e-11 Score=111.15 Aligned_cols=131 Identities=23% Similarity=0.274 Sum_probs=100.8
Q ss_pred CCCCccEeecCCCccc--chhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccc
Q 007072 179 KFPDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256 (619)
Q Consensus 179 ~~p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~f 256 (619)
..++|+.|+|++|.|. .++ ..+.++++|+.|+|++|.+....
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~--------------------------------- 58 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSIA--------------------------------- 58 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCCT---------------------------------
T ss_pred CCccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCch---------------------------------
Confidence 3478999999999988 555 35688999999999999866441
Q ss_pred cccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccc
Q 007072 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336 (619)
Q Consensus 257 c~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL 336 (619)
....+.+|+.|+|++|.|....+..+. .+++|+.|++++|.|..++. ...+.++++|+.|
T Consensus 59 ---------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L 118 (149)
T 2je0_A 59 ---------------NLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSL 118 (149)
T ss_dssp ---------------TCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEE
T ss_pred ---------------hhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEE
Confidence 011367899999999999985455554 69999999999999987641 3568999999999
Q ss_pred cccCCCCCCchh--HHHhhhcCccccccCcc
Q 007072 337 GVDIPGPLGESA--IEILESLPTLCTLNGVT 365 (619)
Q Consensus 337 ~ld~p~~l~~~~--~~il~~lp~L~~LNg~~ 365 (619)
++..|..-+... ...+..+|+|+.|+..+
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999885422222 36789999999987653
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=9.8e-12 Score=132.47 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=101.0
Q ss_pred CceeeeecccCCCCccccccccccCCCC----CccEeecCCCcccchh--hHHHHHhcccccceeecCCCcccccccchh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFP----DLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p----~L~~L~Ls~NkL~~~~--~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~ 227 (619)
..++.|+|++|.|.+ ..+..++..++ +|+.|+|++|.|.... .+...+.++++|+.|+|++|++.......+
T Consensus 56 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 56 PALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 568888888888876 22223333444 6888888888887643 445678888888888888888765443333
Q ss_pred hhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC---CCCCCC
Q 007072 228 EDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PAEMPS 304 (619)
Q Consensus 228 ~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~---~~~L~~ 304 (619)
...+....++|+.|+++.++-..... ..+......+.+|+.|+|++|.|.......+. ..++++
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~-------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASC-------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGH-------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHH-------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence 33444456678887776543221000 00000011245666777777766543322211 002456
Q ss_pred CcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
|++|++++|.+.+.....+...+.++++|++|++..+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 6777777776666555555666666677777666665
No 107
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.13 E-value=7.9e-11 Score=128.03 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=114.5
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
+.|++++|+|.. +|..+. ++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+....+ ..+..++
T Consensus 3 ~~l~ls~n~l~~---ip~~~~---~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIH---VPKDLS---QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYLDI-----SVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSS---CCCSCC---TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCCEEEG-----GGGTTCT
T ss_pred ceEecCCCCccc---cccccc---ccccEEECCCCcccccC--hhhccccccccEEecCCCccCCcCh-----HHhhccc
Confidence 578999999998 776655 89999999999999876 5689999999999999999887653 3468899
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i 315 (619)
+|+.|+++...-. ..|. . .+.+|+.|+|++|.|..++. ..|. ++++|++|++++|.|
T Consensus 70 ~L~~L~Ls~N~l~--------------~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 70 ELEYLDLSHNKLV--------------KISC----H--PTVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHL 127 (520)
T ss_dssp TCCEEECCSSCCC--------------EEEC----C--CCCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSC
T ss_pred CCCEEecCCCcee--------------ecCc----c--ccCCccEEeccCCccccccchhhhc--cCCcceEEEecCccc
Confidence 9999999754321 1111 1 47899999999999998643 5565 899999999999999
Q ss_pred CccchHHHHHHHhCCCCC--ccccccCCC
Q 007072 316 EQNSVRELLEVLKGFPCL--QSLGVDIPG 342 (619)
Q Consensus 316 ~~i~~~~l~~~l~~~~~L--~sL~ld~p~ 342 (619)
.... +.++++| +.|++..+.
T Consensus 128 ~~~~-------~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 128 EKSS-------VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CGGG-------GGGGTTSCEEEEEEEECT
T ss_pred chhh-------ccccccceeeEEEeeccc
Confidence 7643 5667777 888887654
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.13 E-value=1.7e-11 Score=127.93 Aligned_cols=172 Identities=20% Similarity=0.132 Sum_probs=105.1
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcc-cchhhHHHHHhcccccce-eecCCCcccccccchhhhHH
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL-ETVEIIVQEVTKLKNLRA-LWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL-~~~~~v~~~l~~L~~Lk~-L~Ls~Npi~~~~~~~~~~~i 231 (619)
..++.|+|++|+|.. +|.+.+.++++|+.|+|++|+| +.++ ..++.++++|+. +.+++|.+....+ ..
T Consensus 30 ~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINP-----EA 99 (350)
T ss_dssp TTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEEEEETTCCEECT-----TS
T ss_pred CCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhcccCCcccccCc-----hh
Confidence 357788899999888 7888888899999999999986 4444 346778887764 6677788877653 34
Q ss_pred hhcCCccccccccccccccccccccccccc-------CCCCCCcccc-CCCcC-CcccccccCccccccCcccccCCCCC
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVY-------DKDNPSSLCL-RDRPL-QSVTSLDLSNRCIHNLVNKAFSPAEM 302 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~-------~~~~p~~l~~-~~~~L-~~L~~LdLS~N~I~~Lp~~~f~~~~L 302 (619)
+..+++|+.|+++.++-..--...|+...- +...-..+.. .+..+ ..++.|+|++|.|..+|...|. .
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---~ 176 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN---G 176 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST---T
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc---c
Confidence 677888888877654332111111111000 0000011111 11122 3466777777777777777763 4
Q ss_pred CCCcccccC-CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 303 PSLSHLNIR-GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 303 ~~L~~LnLs-~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+|+.|+++ +|.+..++ ...|.++++|+.|++..|.
T Consensus 177 ~~L~~l~l~~~n~l~~i~----~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EEEEEEECTTCTTCCCCC----TTTTTTEECCSEEECTTSC
T ss_pred cchhHHhhccCCcccCCC----HHHhccCcccchhhcCCCC
Confidence 567777775 35666666 3456667777777776654
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=1.5e-11 Score=128.18 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=102.9
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccE-eecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhH
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA-LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~-L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~ 230 (619)
|...+++|+|++|.|.. .++.+.+.+++++.. +.+.+|+|..++ ...+.++++|+.|+|++|.+....+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~---- 123 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVH---- 123 (350)
T ss_dssp TCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCT----
T ss_pred CCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccccccccccccCCchh----
Confidence 45678899999999866 577788888888775 577788998886 457888999999999999887665321
Q ss_pred HhhcCCcccccccccccccccccc-ccccc-----cc--CCCCCCccccCCCcCCcccccccC-ccccccCcccccCCCC
Q 007072 231 ILQGCPKLEIYNSNFTINFGEWAL-GFCGE-----VY--DKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNLVNKAFSPAE 301 (619)
Q Consensus 231 il~~lP~LeiLn~~~T~n~~~~~l-~fc~~-----~~--~~~~p~~l~~~~~~L~~L~~LdLS-~N~I~~Lp~~~f~~~~ 301 (619)
+....++..+++....+.+...- .|.+- .. ..+.-..+........+|+.|+|+ +|.+..+|...|. .
T Consensus 124 -~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~--~ 200 (350)
T 4ay9_X 124 -KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--G 200 (350)
T ss_dssp -TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT--T
T ss_pred -hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc--c
Confidence 22233343343321111111000 00000 00 001112222222245678999997 5889999999998 9
Q ss_pred CCCCcccccCCCCCCccc
Q 007072 302 MPSLSHLNIRGNPLEQNS 319 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~ 319 (619)
+++|+.|+|++|.|..++
T Consensus 201 l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLP 218 (350)
T ss_dssp EECCSEEECTTSCCCCCC
T ss_pred CcccchhhcCCCCcCccC
Confidence 999999999999999988
No 110
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=2.7e-11 Score=129.08 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=49.6
Q ss_pred CCcccccccCccccccCcccccC---CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 276 LQSVTSLDLSNRCIHNLVNKAFS---PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 276 L~~L~~LdLS~N~I~~Lp~~~f~---~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+.+|+.|||++|.|.......+. ....++|++|+|++|.|.+.....+...+..+++|+.|++..|..
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 56888888888888765432221 013678889999999887766666777788889999998888753
No 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=1.1e-10 Score=109.92 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=91.8
Q ss_pred eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
.+.|++++|+|.. +|..+ .++|+.|+|++|+|+.++ ...+.++++|+.|+|++|.+....++
T Consensus 11 ~~~l~~s~n~l~~---ip~~~---~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~---------- 72 (170)
T 3g39_A 11 GTTVDCSGKSLAS---VPTGI---PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAG---------- 72 (170)
T ss_dssp TTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT----------
T ss_pred CCEEEeCCCCcCc---cCccC---CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCccChh----------
Confidence 3568899999988 66554 388999999999999885 45788999999999999987765421
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
.+..+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|++
T Consensus 73 ------------------------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 73 ------------------------------------VFDKLTQLTQLSLNDNQLKSIPRGAFD--NLKSLTHIWLLNNPW 114 (170)
T ss_dssp ------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCB
T ss_pred ------------------------------------hccCCCCCCEEECCCCccCEeCHHHhc--CCCCCCEEEeCCCCC
Confidence 012477899999999999999998887 899999999999998
Q ss_pred Cccc--hHHHHHHHhCCC
Q 007072 316 EQNS--VRELLEVLKGFP 331 (619)
Q Consensus 316 ~~i~--~~~l~~~l~~~~ 331 (619)
.-.- ...+..++...+
T Consensus 115 ~c~c~~l~~l~~~l~~~~ 132 (170)
T 3g39_A 115 DCACSDILYLSRWISQHP 132 (170)
T ss_dssp CTTBGGGHHHHHHHHHCG
T ss_pred CCCchhHHHHHHHHHhCc
Confidence 5432 333444444433
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=3.6e-11 Score=139.80 Aligned_cols=142 Identities=23% Similarity=0.172 Sum_probs=109.2
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|+|++|.|.. ++...+.++++|+.|+|++| .+..++ ...+.+|++|+.|+|++|.+....++ .+
T Consensus 24 ~~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~p~-----~~ 93 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTID--KEAFRNLPNLRILDLGSSKIYFLHPD-----AF 93 (844)
T ss_dssp TTCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEEC--TTTTSSCTTCCEEECTTCCCCEECTT-----SS
T ss_pred CCcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccC--HHHhcCCCCCCEEECCCCcCcccCHh-----Hc
Confidence 578899999999998 66677889999999999999 555553 35789999999999999999877533 46
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs 311 (619)
..+++|+.|+++.+...+ ..|.. .....+.+|+.||||+|.+..++. ..|+ ++++|+.|+|+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~-------------~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls 156 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSD-------------AVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFS 156 (844)
T ss_dssp CSCSSCCCEECTTCCCSS-------------CCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEE
T ss_pred cCCcccCEeeCcCCCCCc-------------ccccC--ccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECC
Confidence 789999999987544321 01110 013358899999999999988765 5666 89999999999
Q ss_pred CCCCCccchHH
Q 007072 312 GNPLEQNSVRE 322 (619)
Q Consensus 312 ~N~i~~i~~~~ 322 (619)
+|.|..+....
T Consensus 157 ~N~i~~~~~~~ 167 (844)
T 3j0a_A 157 SNQIFLVCEHE 167 (844)
T ss_dssp SSCCCCCCSGG
T ss_pred CCcCCeeCHHH
Confidence 99987765333
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=5.3e-11 Score=138.35 Aligned_cols=178 Identities=20% Similarity=0.191 Sum_probs=103.3
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccccc-------
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD------- 224 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~------- 224 (619)
+...++.|+|++|.|.. ++...+..+++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+.....
T Consensus 312 ~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L 386 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGE---LYSSNFYGLPKVAYIDLQKNHIAIIQ--DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386 (844)
T ss_dssp TCSSCCEEEEESCCCSC---CCSCSCSSCTTCCEEECCSCCCCCCC--SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEE
T ss_pred CCCCCCEEECCCCCCCc---cCHHHhcCCCCCCEEECCCCCCCccC--hhhhcCCCCCCEEECCCCCCCcccCCCCcchh
Confidence 34566677777777665 44455556666666666666666554 2345566666666666666543210
Q ss_pred ------------c---------------hh-hhHHhhcCCcccccccccccccc---cc---------cccccccccCCC
Q 007072 225 ------------H---------------CM-EDAILQGCPKLEIYNSNFTINFG---EW---------ALGFCGEVYDKD 264 (619)
Q Consensus 225 ------------~---------------~~-~~~il~~lP~LeiLn~~~T~n~~---~~---------~l~fc~~~~~~~ 264 (619)
. ++ ....+..+|+|+.|+++...-.+ .. .|....+.+...
T Consensus 387 ~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp EEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred ccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 0 00 01224478888888776533221 00 001111111100
Q ss_pred CCCccc-cCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 265 NPSSLC-LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 265 ~p~~l~-~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+.... .....+.+|+.|+|++|.|..+|+..|. ++++|+.|+|++|.|..++... +. ++|+.|+++.|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~----~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS--HLTALRGLSLNSNRLTVLSHND----LP--ANLEILDISRNQ 537 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS--SCCSCSEEEEESCCCSSCCCCC----CC--SCCCEEEEEEEC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHcc--chhhhheeECCCCCCCccChhh----hh--ccccEEECCCCc
Confidence 001111 1234578899999999999999998887 8999999999999998877211 21 667777666554
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=2.3e-10 Score=124.44 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=101.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..+++|++++|+|.. +| -...+++|+.|+|++|.|+.++ +.++++|+.|+|++|.+.... +.
T Consensus 42 ~~L~~L~Ls~n~l~~---~~--~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~--------~~ 103 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MT--GIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLD--------VT 103 (457)
T ss_dssp TTCCEEECCSSCCCC---CT--TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC--------CT
T ss_pred CCCCEEEccCCCccc---Ch--hhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCceee--------cC
Confidence 567888888888887 34 2467888888888888888864 677888888888888877653 56
Q ss_pred cCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCcc-ccccCcccccCCCCCCCCccc
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFSPAEMPSLSHL 308 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~~~~L~~L~~L 308 (619)
.+++|+.|+++...-.+ +.++.+...-. .+.-..+ ....+.+|+.|+|++| .+..+ .+. .+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~--~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL---DVT--PQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC---CCT--TCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc---ccc--cCCcCCEE
Confidence 77888888776543221 11000000000 0000000 1223445555555555 33333 122 67777777
Q ss_pred ccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (619)
Q Consensus 309 nLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L 361 (619)
++++|.|..++ +.++++|+.|++..+..-+. -+..+++|+.|
T Consensus 176 ~ls~n~l~~l~-------l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L 217 (457)
T 3bz5_A 176 DCSFNKITELD-------VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFL 217 (457)
T ss_dssp ECCSSCCCCCC-------CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEE
T ss_pred ECCCCccceec-------cccCCCCCEEECcCCcCCee----ccccCCCCCEE
Confidence 77777777755 56778888888776653222 13455666555
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=9.2e-13 Score=126.40 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=100.0
Q ss_pred CceeeeecccCCCCcc--cc--ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072 154 GTVKWLELEDADIGDD--ML--LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~--~l--i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~ 229 (619)
..+..++++++.+... .+ +|. .+..+++|+.|+|++|.|+.++ .+.++++|+.|+|++|.+.....
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~~l~~----- 87 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIEN----- 87 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEECSCSS-----
T ss_pred ccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcccccc-----
Confidence 3455555666665541 00 111 4467888999999999888865 67788889999998888764321
Q ss_pred HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccc
Q 007072 230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (619)
Q Consensus 230 ~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln 309 (619)
.... +.+|+.|+|++|.|..+|. +. .+++|+.|+
T Consensus 88 -~~~~-----------------------------------------~~~L~~L~L~~N~l~~l~~--~~--~l~~L~~L~ 121 (198)
T 1ds9_A 88 -LDAV-----------------------------------------ADTLEELWISYNQIASLSG--IE--KLVNLRVLY 121 (198)
T ss_dssp -HHHH-----------------------------------------HHHCSEEEEEEEECCCHHH--HH--HHHHSSEEE
T ss_pred -hhhc-----------------------------------------CCcCCEEECcCCcCCcCCc--cc--cCCCCCEEE
Confidence 1122 3456667777777776652 33 567777777
Q ss_pred cCCCCCCccchHHHHHHHhCCCCCccccccCCCCC---------CchhHHHhhhcCccccccCccch
Q 007072 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL---------GESAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l---------~~~~~~il~~lp~L~~LNg~~~s 367 (619)
+++|.|.+++. ...+.++++|+.|++..|..- ..+...++..+|+|+.|+|..++
T Consensus 122 l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 122 MSNNKITNWGE---IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp ESEEECCCHHH---HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred CCCCcCCchhH---HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 77777766541 134667777777777665421 11225668889999999988886
No 116
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=1.8e-10 Score=129.95 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred cccccccCccccccCccccc-CCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072 278 SVTSLDLSNRCIHNLVNKAF-SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f-~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~ 340 (619)
+|+.|+|++|.|..+|...+ . .+++|+.|+|++|.|..++ ..+.++++|+.|++..
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~--~l~~L~~L~Ls~N~l~~ip-----~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRAT--TLPYLVGIDLSYNSFSKFP-----TQPLNSSTLKGFGIRN 545 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTT--TCTTCCEEECCSSCCSSCC-----CGGGGCSSCCEEECCS
T ss_pred CccEEECcCCcCCccChhhhhc--cCCCcCEEECCCCCCCCcC-----hhhhcCCCCCEEECCC
Confidence 77778888888877776665 3 5777888888888777654 3456677777777754
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=8.9e-11 Score=131.54 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=60.3
Q ss_pred CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
.|+.|+|++|+|+.++ . +.+|++|+.|+|++|.+..... .+..+++|+.|+++...-.+
T Consensus 442 ~L~~L~Ls~n~l~~lp---~-~~~l~~L~~L~Ls~N~l~~lp~------~~~~l~~L~~L~Ls~N~l~~----------- 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC---H-LEQLLLVTHLDLSHNRLRALPP------ALAALRCLEVLQASDNALEN----------- 500 (567)
T ss_dssp TCSEEECTTSCCSSCC---C-GGGGTTCCEEECCSSCCCCCCG------GGGGCTTCCEEECCSSCCCC-----------
T ss_pred CceEEEecCCCCCCCc---C-ccccccCcEeecCcccccccch------hhhcCCCCCEEECCCCCCCC-----------
Confidence 4777888888777765 2 6777788888888887764321 23444444444443221110
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCCCCCCccc
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRGNPLEQNS 319 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~N~i~~i~ 319 (619)
.| ....+.+|+.|+|++|.|..++ +..|. ++++|+.|+|++|+|...+
T Consensus 501 ---lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~--~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 501 ---VD-----GVANLPRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp ---CG-----GGTTCSSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTSGGGGSS
T ss_pred ---Cc-----ccCCCCCCcEEECCCCCCCCCCCcHHHh--cCCCCCEEEecCCcCCCCc
Confidence 01 1123556666666666666663 33333 5666666666666665543
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=1.7e-10 Score=109.43 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=80.8
Q ss_pred eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (619)
Q Consensus 157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP 236 (619)
..+++++++|.. +|..+. ++|+.|+|++|+|..++ ...+.++++|+.|+|++|.+....++
T Consensus 15 ~~l~~~~n~l~~---iP~~~~---~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~----------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLAS---VPAGIP---TDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTAIPTG----------- 75 (174)
T ss_dssp SEEECCSSCCSS---CCSCCC---TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT-----------
T ss_pred cEEEeCCCCCCc---cCCCcC---CCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCccChh-----------
Confidence 467888888877 665543 78888888888888875 35678888888888888887655411
Q ss_pred cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (619)
Q Consensus 237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~ 316 (619)
.+..+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|++.
T Consensus 76 -----------------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 76 -----------------------------------VFDKLTQLTQLDLNDNHLKSIPRGAFD--NLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -----------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCBC
T ss_pred -----------------------------------HhCCcchhhEEECCCCccceeCHHHhc--cccCCCEEEeCCCCcc
Confidence 012367888888999999988888776 7889999999999886
Q ss_pred cc
Q 007072 317 QN 318 (619)
Q Consensus 317 ~i 318 (619)
-.
T Consensus 119 c~ 120 (174)
T 2r9u_A 119 CE 120 (174)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 119
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=7.9e-11 Score=125.19 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=128.7
Q ss_pred CceeeeecccCCCCccc--cccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 154 GTVKWLELEDADIGDDM--LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~--li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
..++.|+|++|.|.... .+...+....++|+.|+|++|.|.+.. +......+++|+.|+|++|.+.......+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56889999999998721 122222345589999999999997754 334556688999999999998765433333333
Q ss_pred hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc----cccCCCCCCCCcc
Q 007072 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----KAFSPAEMPSLSH 307 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~----~~f~~~~L~~L~~ 307 (619)
....++|+.|+++...-. ..+... +........+|+.|||++|.|..... ..+. ..++|+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~-~~~~~~------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~~~L~~ 215 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLT-AAGVAV------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RNRQLQE 215 (372)
T ss_dssp HSTTCCCCEEECCSSCCH-HHHHHH------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GCSCCCE
T ss_pred HhcCCccceeeCCCCCCC-hHHHHH------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cCCCcCe
Confidence 356899999998754321 111000 00001135689999999999986432 2233 5789999
Q ss_pred cccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcC
Q 007072 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLP 356 (619)
Q Consensus 308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp 356 (619)
|+|++|.|.+.....+...+..+++|++|+++.|. ++......+..+.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~ 263 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLG 263 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHh
Confidence 99999999988877788889999999999999886 4444444554443
No 120
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.06 E-value=1.8e-10 Score=130.02 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=50.1
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCC------CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG------NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~------N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.+.+|+.|+|++|.|..+|..++ .+++|+.|+|++ |.+...- +..+.++++|+.|++..|..
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~Ls~N~~ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTLREW----PEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGG---GCSSCCEEECCSCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEECCCCCCCCcChhhh---cCCCCCEEECCCCcccccCcccccC----hHHHhcCCCCCEEECCCCcC
Confidence 57899999999999999888776 699999999965 4444322 35678899999999988864
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.02 E-value=4.8e-10 Score=127.14 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=30.2
Q ss_pred CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+|+.|+|++|.|..+|. .+++|+.|+|++|.|..++. .+++|+.|++..|.
T Consensus 221 ~~L~~L~Ls~N~L~~lp~------~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSC
T ss_pred CCCCEEEccCCccCcCCC------CCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCC
Confidence 456666666666666551 45566666666666665551 45566666665553
No 122
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.01 E-value=2.2e-10 Score=131.73 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=98.7
Q ss_pred ceeeeecccCCCCccccccccccC-CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSS-KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~-~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
.++.|++++|.+.. .++..+.. .+++|+.|+|++|.+.... ...+.++++|+.|+|++|.+....+ ..+.
T Consensus 369 ~L~~L~Ls~N~l~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p-----~~l~ 439 (768)
T 3rgz_A 369 SLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIP-----SSLG 439 (768)
T ss_dssp TCSEEECCSSEEEE--ECCTTTTCSTTCCCCEEECCSSEEEEEC--CGGGGGCTTCCEEECCSSEEESCCC-----GGGG
T ss_pred CCcEEEccCCCcCC--CcChhhhhcccCCccEEECCCCcccccc--CHHHhcCCCCCEEECcCCcccCccc-----HHHh
Confidence 67888888888766 33433332 3678888888888877432 3467788888888888888775443 2356
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
.+++|+.|+++.....+ ..|.. ...+.+|+.|+|++|.+....+..|. ++++|+.|+|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~-------------~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N 500 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEG-------------EIPQE----LMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNN 500 (768)
T ss_dssp GCTTCCEEECCSSCCCS-------------CCCGG----GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcccC-------------cCCHH----HcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCC
Confidence 77888888776433221 11211 11356677777777777644444444 5677777777777
Q ss_pred CCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.+.... +..+.++++|+.|++..|..
T Consensus 501 ~l~~~~----p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 501 RLTGEI----PKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCCSCC----CGGGGGCTTCCEEECCSSCC
T ss_pred ccCCcC----ChHHhcCCCCCEEECCCCcc
Confidence 766332 34566677777777766643
No 123
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=3.4e-10 Score=133.06 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=49.2
Q ss_pred CceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|+|++|+|.. +|. +...++++|+.|+|++|.|..++ .+.++++|+.|+|++|.+..... .+
T Consensus 548 ~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~~L~~L~Ls~N~l~~lp~------~l 614 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNVKLTDLKLDYNQIEEIPE------DF 614 (876)
T ss_dssp TTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSCCCBCC----CCCTTSEESEEECCSSCCSCCCT------TS
T ss_pred CCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCCcccch----hhcCCCcceEEECcCCccccchH------HH
Confidence 466777777777765 443 34556777777777777776554 56667777777777777663321 14
Q ss_pred hcCCc-cccccccc
Q 007072 233 QGCPK-LEIYNSNF 245 (619)
Q Consensus 233 ~~lP~-LeiLn~~~ 245 (619)
..+++ |+.|+++.
T Consensus 615 ~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 615 CAFTDQVEGLGFSH 628 (876)
T ss_dssp CEECTTCCEEECCS
T ss_pred hhccccCCEEECcC
Confidence 55666 66666543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=6.7e-10 Score=124.46 Aligned_cols=155 Identities=20% Similarity=0.277 Sum_probs=110.1
Q ss_pred ccCCCCCccEee-cCCCcccchhhHH---HHHhc--ccccceeecCCCcccccccchhhhHHhhcCCccccccccccccc
Q 007072 176 LSSKFPDLQALS-LCGNKLETVEIIV---QEVTK--LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF 249 (619)
Q Consensus 176 l~~~~p~L~~L~-Ls~NkL~~~~~v~---~~l~~--L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~ 249 (619)
....+++|+.|+ ++.|.+.+++... ..+.. ...|+.|+|++|.+.... . +..|++|+.|+++...-.
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCc------C-ccccccCcEeecCccccc
Confidence 334566677776 6666555444211 11222 236999999999998753 2 678999999998753321
Q ss_pred ccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhC
Q 007072 250 GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329 (619)
Q Consensus 250 ~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~ 329 (619)
..|..+ ..+.+|+.|+|++|.|..+| .|. ++++|+.|+|++|.|..+.. +..+.+
T Consensus 477 --------------~lp~~~----~~l~~L~~L~Ls~N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~---p~~l~~ 531 (567)
T 1dce_A 477 --------------ALPPAL----AALRCLEVLQASDNALENVD--GVA--NLPRLQELLLCNNRLQQSAA---IQPLVS 531 (567)
T ss_dssp --------------CCCGGG----GGCTTCCEEECCSSCCCCCG--GGT--TCSSCCEEECCSSCCCSSST---TGGGGG
T ss_pred --------------ccchhh----hcCCCCCEEECCCCCCCCCc--ccC--CCCCCcEEECCCCCCCCCCC---cHHHhc
Confidence 233322 35889999999999999998 454 89999999999999988731 246889
Q ss_pred CCCCccccccCCCCCCc--hhHHHhhhcCcccccc
Q 007072 330 FPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLN 362 (619)
Q Consensus 330 ~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LN 362 (619)
+++|+.|++..|..-+. ....+...+|+|+.||
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99999999998864322 2256777899998875
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=1.1e-09 Score=123.02 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=83.9
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~ 233 (619)
..++.|+|++|.|.. +| ..+++|+.|+|++|+|+.++. +.+ +|+.|+|++|.+....+
T Consensus 80 ~~L~~L~Ls~N~l~~---ip----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L~Ls~N~l~~lp~--------- 137 (571)
T 3cvr_A 80 PQITVLEITQNALIS---LP----ELPASLEYLDACDNRLSTLPE----LPA--SLKHLDVDNNQLTMLPE--------- 137 (571)
T ss_dssp TTCSEEECCSSCCSC---CC----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEEECCSSCCSCCCC---------
T ss_pred CCCCEEECcCCCCcc---cc----cccCCCCEEEccCCCCCCcch----hhc--CCCEEECCCCcCCCCCC---------
Confidence 346777777777765 44 345777777777777776653 332 67777777777665331
Q ss_pred cCCccccccccccccccccc--------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072 234 GCPKLEIYNSNFTINFGEWA--------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (619)
Q Consensus 234 ~lP~LeiLn~~~T~n~~~~~--------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L 305 (619)
.+++|+.|+++...-.+ +. |....+.+. ..|. . ..+|+.|+|++|.|..+|. |. . +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~-~lp~-----l--~~~L~~L~Ls~N~L~~lp~--~~--~--~L 202 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT-FLPE-----L--PESLEALDVSTNLLESLPA--VP--V--RN 202 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC-----C--CTTCCEEECCSSCCSSCCC--CC-------
T ss_pred cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCC-Ccch-----h--hCCCCEEECcCCCCCchhh--HH--H--hh
Confidence 45666666665432211 00 001111110 1111 0 1567777777777777776 32 1 44
Q ss_pred -------cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 306 -------SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 306 -------~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
+.|+|++|.|..++ ..+..+++|+.|++..|..
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIP-----ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -----CCEEEECCSSCCCCCC-----GGGGGSCTTEEEECCSSSC
T ss_pred hcccccceEEecCCCcceecC-----HHHhcCCCCCEEEeeCCcC
Confidence 77788888777766 2344578888888777753
No 126
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=8e-10 Score=129.93 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=112.7
Q ss_pred ceeeeecccCCCCcccccccccc-----CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072 155 TVKWLELEDADIGDDMLLSLNLS-----SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~-----~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~ 229 (619)
.++.|+|++|.|.. .++.+. ..+++|+.|+|++|.|..++ ...+.++++|+.|+|++|.+...... +..
T Consensus 645 ~L~~L~Ls~N~l~g---~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp--~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~~ 718 (876)
T 4ecn_A 645 VMGSVDFSYNKIGS---EGRNISCSMDDYKGINASTVTLSYNEIQKFP--TELFATGSPISTIILSNNLMTSIPEN-SLK 718 (876)
T ss_dssp CEEEEECCSSCTTT---TSSSCSSCTTTCCCCCEEEEECCSSCCCSCC--HHHHHTTCCCSEEECCSCCCSCCCTT-SSS
T ss_pred CCCEEECcCCcCCC---ccccchhhhccccCCCcCEEEccCCcCCccC--HHHHccCCCCCEEECCCCcCCccChH-Hhc
Confidence 49999999999877 222222 24569999999999999876 56677899999999999999855422 111
Q ss_pred H---HhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072 230 A---ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (619)
Q Consensus 230 ~---il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~ 306 (619)
. .++.|++|+.|+++...-. ..|..+. ...+.+|+.|+|++|.|..+|..++ ++++|+
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~--------------~lp~~l~--~~~l~~L~~L~Ls~N~L~~lp~~l~---~L~~L~ 779 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT--------------SLSDDFR--ATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLK 779 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC--------------CCCGGGS--TTTCTTCCEEECCSSCCSSCCCGGG---GCTTCC
T ss_pred cccccccccCCccEEECCCCCCc--------------cchHHhh--hccCCCcCEEEeCCCCCCccchhhh---cCCCCC
Confidence 1 1234458998888743221 1221111 1247889999999999999887766 689999
Q ss_pred ccccCC------CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 307 HLNIRG------NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 307 ~LnLs~------N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.|+|++ |.+...- +..+.++++|+.|++..|..
T Consensus 780 ~L~Ls~N~~ls~N~l~~~i----p~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQW----PTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp EEECCCCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCC
T ss_pred EEECCCCCCcccccccccC----hHHHhcCCCCCEEECCCCCC
Confidence 999977 4443322 45678899999999988764
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.92 E-value=2.7e-09 Score=121.00 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=51.1
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP 343 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~ 343 (619)
.+.+|+.|+|++|.|..+|. .+++|+.|+|++|.|..++ ..+.++++|+.|++..|..
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~~lp-----~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRLP-----ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCCSCC-----GGGGGSCTTCEEECCSCCC
T ss_pred CCCcCcEEECCCCCCCcCCc------ccccCcEEeCCCCCCCcCC-----HHHhhccccCEEEecCCCC
Confidence 46789999999999999986 5789999999999999776 3588999999999998874
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=1.9e-09 Score=121.12 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=76.2
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.+++|+|++|.|.. +|. .+++|+.|+|++|+|+.++. .+++|+.|+|++|.+..... + .
T Consensus 121 ~L~~L~Ls~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~lp~--l-----~- 179 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM---LPE----LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFLPE--L-----P- 179 (571)
T ss_dssp TCCEEECCSSCCSC---CCC----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--C-----C-
T ss_pred CCCEEECCCCcCCC---CCC----cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCCcch--h-----h-
Confidence 56666666666655 333 45666666666666666552 45666666666666655331 1 1
Q ss_pred CCcccccccccccccccccccccccccCCCCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N 313 (619)
++|+.|+++..+-. ..|. +.. .......|+.|+|++|.|..+|..++ .+++|+.|+|++|
T Consensus 180 -~~L~~L~Ls~N~L~--------------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~---~l~~L~~L~L~~N 240 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE--------------SLPA-VPVRNHHSEETEIFFRCRENRITHIPENIL---SLDPTCTIILEDN 240 (571)
T ss_dssp -TTCCEEECCSSCCS--------------SCCC-CC--------CCEEEECCSSCCCCCCGGGG---GSCTTEEEECCSS
T ss_pred -CCCCEEECcCCCCC--------------chhh-HHHhhhcccccceEEecCCCcceecCHHHh---cCCCCCEEEeeCC
Confidence 56666665532211 1222 110 00012233999999999999999888 5999999999999
Q ss_pred CCCccc
Q 007072 314 PLEQNS 319 (619)
Q Consensus 314 ~i~~i~ 319 (619)
+|....
T Consensus 241 ~l~~~~ 246 (571)
T 3cvr_A 241 PLSSRI 246 (571)
T ss_dssp SCCHHH
T ss_pred cCCCcC
Confidence 997654
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=6.5e-10 Score=104.68 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=88.2
Q ss_pred CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
..+.|++++|.|..++.. + .++|+.|+|++|.+....++
T Consensus 10 ~~~~l~~s~n~l~~ip~~---~--~~~l~~L~L~~N~i~~~~~~------------------------------------ 48 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG---I--PTTTQVLYLYDNQITKLEPG------------------------------------ 48 (170)
T ss_dssp ETTEEECTTSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTT------------------------------------
T ss_pred CCCEEEeCCCCcCccCcc---C--CCCCcEEEcCCCcCCccChh------------------------------------
Confidence 457899999999998732 1 48999999999998876522
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
....+.+|+.|+|++|+|..+|+..|. .+++|+.|+|++|.|..++ ...+.++++|+.|++..|
T Consensus 49 ----------~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 49 ----------VFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ----------TTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS
T ss_pred ----------hhcCcccCCEEECCCCCcCccChhhcc--CCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCC
Confidence 112477899999999999999999997 8999999999999999988 456889999999999988
Q ss_pred CC
Q 007072 342 GP 343 (619)
Q Consensus 342 ~~ 343 (619)
..
T Consensus 113 ~~ 114 (170)
T 3g39_A 113 PW 114 (170)
T ss_dssp CB
T ss_pred CC
Confidence 63
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=1.1e-09 Score=126.20 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=89.4
Q ss_pred CCceeeeecccCCCCcc------ccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccch
Q 007072 153 DGTVKWLELEDADIGDD------MLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~------~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~ 226 (619)
...+..+.|+.+.|... ..++.+.+..++.|+.|+|++|+|..++ ..+.+|++|+.|+|++|.+....
T Consensus 190 ~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~lp--- 263 (727)
T 4b8c_D 190 QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS---ANIFKYDFLTRLYLNGNSLTELP--- 263 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCSCCC---GGGGGCCSCSCCBCTTSCCSCCC---
T ss_pred hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC---hhhcCCCCCCEEEeeCCcCcccC---
Confidence 34556677777776652 2355667788999999999999999876 34558999999999999998543
Q ss_pred hhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (619)
Q Consensus 227 ~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~ 306 (619)
..+..|++|+.|+++...-. ..|..+ ..|.+|+.|+|++|.|..+|.. |. +|++|+
T Consensus 264 ---~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~L~~N~l~~lp~~-~~--~l~~L~ 319 (727)
T 4b8c_D 264 ---AEIKNLSNLRVLDLSHNRLT--------------SLPAEL----GSCFQLKYFYFFDNMVTTLPWE-FG--NLCNLQ 319 (727)
T ss_dssp ---GGGGGGTTCCEEECTTSCCS--------------SCCSSG----GGGTTCSEEECCSSCCCCCCSS-TT--SCTTCC
T ss_pred ---hhhhCCCCCCEEeCcCCcCC--------------ccChhh----cCCCCCCEEECCCCCCCccChh-hh--cCCCcc
Confidence 22578999999998753321 234333 2588999999999999999887 55 899999
Q ss_pred ccccCCCCCCccc
Q 007072 307 HLNIRGNPLEQNS 319 (619)
Q Consensus 307 ~LnLs~N~i~~i~ 319 (619)
.|+|++|+|....
T Consensus 320 ~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 320 FLGVEGNPLEKQF 332 (727)
T ss_dssp CEECTTSCCCSHH
T ss_pred EEeCCCCccCCCC
Confidence 9999999998654
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=9.1e-10 Score=104.34 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccC
Q 007072 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYD 262 (619)
Q Consensus 183 L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~ 262 (619)
-..|++++|+|..+|.- + .++|+.|+|++|.+....++
T Consensus 14 ~~~l~~~~n~l~~iP~~---~--~~~L~~L~Ls~N~l~~~~~~------------------------------------- 51 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG---I--PTDKQRLWLNNNQITKLEPG------------------------------------- 51 (174)
T ss_dssp SSEEECCSSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTT-------------------------------------
T ss_pred CcEEEeCCCCCCccCCC---c--CCCCcEEEeCCCCccccCHH-------------------------------------
Confidence 47899999999998742 2 38999999999998766422
Q ss_pred CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 263 KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 263 ~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
....+.+|+.|+|++|.|..+|...|. .+++|+.|+|++|.|..++ ...+.++++|+.|++..|.
T Consensus 52 ---------~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 52 ---------VFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNHLKSIP----RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ---------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSC
T ss_pred ---------HhcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCCCccceeC----HHHhccccCCCEEEeCCCC
Confidence 112477899999999999999999887 8999999999999999888 4558899999999998886
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.89 E-value=5.1e-09 Score=113.73 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=78.8
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.+++|++++|.|.. +| . +.++++|+.|+|++|+|+.++. .+++|+.|+|++|.+.... . +..
T Consensus 132 ~L~~L~L~~n~l~~---lp-~-~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~l~-~------~~~ 193 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK---LP-E-LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEELP-E------LQN 193 (454)
T ss_dssp TCCEEECCSSCCSS---CC-C-CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSCC-C------CTT
T ss_pred CCCEEECcCCCCCC---Cc-c-cCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCcCc-c------ccC
Confidence 45666666666655 33 2 4566666666666666665542 2346666666666665432 1 455
Q ss_pred CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (619)
Q Consensus 235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~ 314 (619)
+++|+.|+++...-.+ .| ....+|+.|+|++|.+..+|. |. .+++|+.|++++|.
T Consensus 194 l~~L~~L~l~~N~l~~--------------l~-------~~~~~L~~L~l~~n~l~~lp~--~~--~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKK--------------LP-------DLPLSLESIVAGNNILEELPE--LQ--NLPFLTTIYADNNL 248 (454)
T ss_dssp CTTCCEEECCSSCCSS--------------CC-------CCCTTCCEEECCSSCCSSCCC--CT--TCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCCc--------------CC-------CCcCcccEEECcCCcCCcccc--cC--CCCCCCEEECCCCc
Confidence 6666666654322110 01 112467777777777777663 43 67777777777777
Q ss_pred CCccchHHHHHHHhCCCCCccccccCCC
Q 007072 315 LEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+..++ ..+++|+.|+++.+.
T Consensus 249 l~~l~--------~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 249 LKTLP--------DLPPSLEALNVRDNY 268 (454)
T ss_dssp CSSCC--------SCCTTCCEEECCSSC
T ss_pred CCccc--------ccccccCEEECCCCc
Confidence 76655 124667777666554
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=1.6e-09 Score=124.58 Aligned_cols=150 Identities=17% Similarity=0.052 Sum_probs=86.8
Q ss_pred CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchh-------hHHHHHhcccccceeecCCCcccccccch
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVE-------IIVQEVTKLKNLRALWLNNNPVLKKCDHC 226 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~-------~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~ 226 (619)
..+..|+|.++++.. ++. .-|..|+|+.|.|..+. .+...+..+++|+.|+|++|.+....+.
T Consensus 173 ~~~~~l~L~~n~~~~---~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~- 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDE---ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN- 242 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGG-
T ss_pred CccceEEeeCCCCCc---chh------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-
Confidence 457789999999887 332 22344445555444433 2245788999999999999999865422
Q ss_pred hhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (619)
Q Consensus 227 ~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~ 306 (619)
+..|++|+.|+++...-. ..|..+ ..|.+|+.|||++|.|..+|..+. +|++|+
T Consensus 243 -----~~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~Ls~N~l~~lp~~~~---~l~~L~ 296 (727)
T 4b8c_D 243 -----IFKYDFLTRLYLNGNSLT--------------ELPAEI----KNLSNLRVLDLSHNRLTSLPAELG---SCFQLK 296 (727)
T ss_dssp -----GGGCCSCSCCBCTTSCCS--------------CCCGGG----GGGTTCCEEECTTSCCSSCCSSGG---GGTTCS
T ss_pred -----hcCCCCCCEEEeeCCcCc--------------ccChhh----hCCCCCCEEeCcCCcCCccChhhc---CCCCCC
Confidence 337999999998753321 233322 358899999999999999987654 799999
Q ss_pred ccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCC
Q 007072 307 HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL 344 (619)
Q Consensus 307 ~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l 344 (619)
+|+|++|.|..++ ..|.++++|+.|++..|..-
T Consensus 297 ~L~L~~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNMVTTLP-----WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSCCCCCC-----SSTTSCTTCCCEECTTSCCC
T ss_pred EEECCCCCCCccC-----hhhhcCCCccEEeCCCCccC
Confidence 9999999998877 24889999999999988753
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=7.1e-10 Score=114.43 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=129.8
Q ss_pred CCceeeeecccCCCCc-----------------cccccccccCC--------CCCccEeecCCCcccchhhHHHHHhccc
Q 007072 153 DGTVKWLELEDADIGD-----------------DMLLSLNLSSK--------FPDLQALSLCGNKLETVEIIVQEVTKLK 207 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~-----------------~~li~l~l~~~--------~p~L~~L~Ls~NkL~~~~~v~~~l~~L~ 207 (619)
...+++|+|++|.|.. ...+|...+.+ |++|+.|+|.. .|+.++ ..++.+|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~--~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE--DAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC--TTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchh--HHHhhcCc
Confidence 4679999999999981 11366677778 99999999999 888887 57899999
Q ss_pred ccceeecCCCcccccccchhhhHHhhcCCccccccccccccc---cccc---cccccccc--------------------
Q 007072 208 NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF---GEWA---LGFCGEVY-------------------- 261 (619)
Q Consensus 208 ~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~---~~~~---l~fc~~~~-------------------- 261 (619)
+|+.|+|++|.+....+ ..+.++.++..+........ ..|. ..-|...-
T Consensus 125 ~L~~l~l~~n~i~~i~~-----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLP-----EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TCCEEEBCCSSCCEECT-----TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ccceEEcCCCCccccch-----hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 99999999999876653 23455666665544321100 0000 00011000
Q ss_pred CCCCCCccccCC-----------CcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCC
Q 007072 262 DKDNPSSLCLRD-----------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330 (619)
Q Consensus 262 ~~~~p~~l~~~~-----------~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~ 330 (619)
...+...+.... ..+.+|+.|+|++|.|..+|...|. ++++|+.|+|.+| +..+. ...|.+|
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~----~~aF~~~ 272 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA--QKKYLLKIKLPHN-LKTIG----QRVFSNC 272 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT--TCTTCCEEECCTT-CCEEC----TTTTTTC
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh--CCCCCCEEECCcc-cceeh----HHHhhCC
Confidence 000000000000 0167899999999999999999998 9999999999998 88887 5678999
Q ss_pred CCCc-cccccCCCCCCchhHHHhhhcCcccccc
Q 007072 331 PCLQ-SLGVDIPGPLGESAIEILESLPTLCTLN 362 (619)
Q Consensus 331 ~~L~-sL~ld~p~~l~~~~~~il~~lp~L~~LN 362 (619)
++|+ +|.+... ++.-....+..|++|+.|+
T Consensus 273 ~~L~~~l~l~~~--l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 273 GRLAGTLELPAS--VTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEEEECTT--CCEECTTTTTTCTTEEEEE
T ss_pred hhccEEEEEccc--ceEEchhhhhCCccCCEEE
Confidence 9999 8887653 2222234566778888775
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=7.3e-11 Score=113.08 Aligned_cols=127 Identities=27% Similarity=0.367 Sum_probs=100.5
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
...+++|++++|+|.. +| ....+++|+.|+|++|.|..++ ..+..+++|+.|+|++|.+.... . +
T Consensus 47 l~~L~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n~l~~l~---~~~~~~~~L~~L~L~~N~l~~l~--~-----~ 111 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKKIE---NLDAVADTLEELWISYNQIASLS--G-----I 111 (198)
T ss_dssp TTTCSEEECSEEEESC---CC--CHHHHTTCCEEEEEEEEECSCS---SHHHHHHHCSEEEEEEEECCCHH--H-----H
T ss_pred CCCCCEEECCCCCCcc---cc--ccccCCCCCEEECCCCCccccc---chhhcCCcCCEEECcCCcCCcCC--c-----c
Confidence 4689999999999988 55 5678999999999999999886 46677899999999999877542 0 1
Q ss_pred hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (619)
Q Consensus 233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs 311 (619)
. .+.+|+.|+|++|.|..++. ..+. .+++|+.|+++
T Consensus 112 ~-----------------------------------------~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~ 148 (198)
T 1ds9_A 112 E-----------------------------------------KLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLA 148 (198)
T ss_dssp H-----------------------------------------HHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEEC
T ss_pred c-----------------------------------------cCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEec
Confidence 1 25678889999999998876 5555 89999999999
Q ss_pred CCCCCccch-----H-HHHHHHhCCCCCcccc
Q 007072 312 GNPLEQNSV-----R-ELLEVLKGFPCLQSLG 337 (619)
Q Consensus 312 ~N~i~~i~~-----~-~l~~~l~~~~~L~sL~ 337 (619)
+|++..... . -....+..+++|+.|+
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999855420 1 1234588999999986
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=5.5e-09 Score=107.87 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=83.0
Q ss_pred eeecccC-CCCccccccccccCCCCCccEeecCC-CcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072 158 WLELEDA-DIGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (619)
Q Consensus 158 ~L~Ls~~-~I~~~~li~l~l~~~~p~L~~L~Ls~-NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l 235 (619)
.++.+++ +|.. +|. ...+++|+.|+|++ |+|..++ ...+.+|++|+.|+|++|.+....++.
T Consensus 12 ~v~~~~~n~l~~---ip~--l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~--------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDS---LHH--LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDA--------- 75 (347)
T ss_dssp CEECCSSCCCTT---TTT--SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTG---------
T ss_pred EEEcCCCCCCCc---cCC--CCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHH---------
Confidence 4677887 7877 665 66788899999996 9998886 456888999999999999877665321
Q ss_pred CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (619)
Q Consensus 236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i 315 (619)
+..|.+|+.|||++|.|..+|...|. .++ |+.|+|++|++
T Consensus 76 -------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~--~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 76 -------------------------------------FHFTPRLSRLNLSFNALESLSWKTVQ--GLS-LQELVLSGNPL 115 (347)
T ss_dssp -------------------------------------GGSCSCCCEEECCSSCCSCCCSTTTC--SCC-CCEEECCSSCC
T ss_pred -------------------------------------hcCCcCCCEEeCCCCccceeCHHHcc--cCC-ceEEEeeCCCc
Confidence 11377899999999999999999886 555 99999999998
Q ss_pred Cc
Q 007072 316 EQ 317 (619)
Q Consensus 316 ~~ 317 (619)
.-
T Consensus 116 ~c 117 (347)
T 2ifg_A 116 HC 117 (347)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=8.5e-09 Score=113.31 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=13.9
Q ss_pred HHHhcCCCCHHHHHHHHHHh
Q 007072 20 VLLAASGLPQSLHRQLFQKL 39 (619)
Q Consensus 20 ~~l~~~~~P~~l~~~L~~kl 39 (619)
..+.++++|.++|...+..|
T Consensus 9 ~~~~~~~LPdeil~~I~~~L 28 (592)
T 3ogk_B 9 CKLSCVATVDDVIEQVMTYI 28 (592)
T ss_dssp ---CCCCCGGGTHHHHHTTC
T ss_pred HhhccCCCCHHHHHHHHHhc
Confidence 34566788888888888887
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.76 E-value=1.5e-08 Score=109.94 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=35.8
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.+.+|+.|++++|.+..+|. ..++|+.|++++|.+..++ .+.++++|+.|+++.+.
T Consensus 193 ~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n~l~~lp------~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNNILEELP------ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCcCCC------CcCcccEEECcCCcCCccc------ccCCCCCCCEEECCCCc
Confidence 45666666777776666553 2346777777777766554 25677777777776654
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.76 E-value=1.7e-09 Score=118.88 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=48.3
Q ss_pred CceeeeecccCCCCccccccccccCCCCC-ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072 154 GTVKWLELEDADIGDDMLLSLNLSSKFPD-LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~-L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il 232 (619)
..++.|+|++|.|.+. .+..+...+|+ |+.|+|++|.-...........++++|+.|+|++|.+..... .....++
T Consensus 112 ~~L~~L~L~~~~i~~~--~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDL--DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG-KWLHELA 188 (592)
T ss_dssp TTCCEEEEESCBCCHH--HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS-HHHHHHH
T ss_pred CCCCeEEeeccEecHH--HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch-hHHHHHH
Confidence 4577777777776651 11112222444 666777666522222333445566777777777776543321 1234455
Q ss_pred hcCCcccccccccc
Q 007072 233 QGCPKLEIYNSNFT 246 (619)
Q Consensus 233 ~~lP~LeiLn~~~T 246 (619)
..+|+|+.|+++.+
T Consensus 189 ~~~~~L~~L~L~~n 202 (592)
T 3ogk_B 189 QHNTSLEVLNFYMT 202 (592)
T ss_dssp HHCCCCCEEECTTC
T ss_pred hcCCCccEEEeecc
Confidence 66666666666543
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.73 E-value=1.6e-09 Score=118.87 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=112.3
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i 231 (619)
...++.|+|++|.|.+ ..+..+...+|+|+.|+|++| .+... .+...+.++++|+.|+|++|.+...... ....+
T Consensus 104 ~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTD-GLAAIAATCRNLKELDLRESDVDDVSGH-WLSHF 179 (594)
T ss_dssp CTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEHH-HHHHHHHHCTTCCEEECTTCEEECCCGG-GGGGS
T ss_pred CCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCHH-HHHHHHHhCCCCCEEeCcCCccCCcchH-HHHHH
Confidence 3578999999999887 222233346899999999999 56542 2445677899999999999997764422 23445
Q ss_pred hhcCCcccccccccccc-cccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccc-------------------
Q 007072 232 LQGCPKLEIYNSNFTIN-FGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIH------------------- 290 (619)
Q Consensus 232 l~~lP~LeiLn~~~T~n-~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~------------------- 290 (619)
...+++|+.|+++.+.. .+.-.+ ......+.+|+.|+|++| .+.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l---------------~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSAL---------------ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHH---------------HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred hhcCCcCcEEEecccCCcCCHHHH---------------HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 56788999998876541 100000 000001234444444444 111
Q ss_pred ------------------------------cCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072 291 ------------------------------NLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (619)
Q Consensus 291 ------------------------------~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l 338 (619)
.+....+. ...+++|++|+|++|.+.+ ..+..++.++++|++|.+
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEE
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeC
Confidence 01110010 0046888888888888543 234556788899999988
Q ss_pred cCCCCCCchh-HHHhhhcCccccc
Q 007072 339 DIPGPLGESA-IEILESLPTLCTL 361 (619)
Q Consensus 339 d~p~~l~~~~-~~il~~lp~L~~L 361 (619)
..+ ++... ..+...+++|+.|
T Consensus 322 ~~~--~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 322 LDY--IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp EGG--GHHHHHHHHHHHCTTCCEE
T ss_pred cCc--cCHHHHHHHHHhCCCCCEE
Confidence 765 22222 3444567888777
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=5e-09 Score=111.28 Aligned_cols=164 Identities=19% Similarity=0.159 Sum_probs=112.2
Q ss_pred CCCccEeecCCCcccchhh--HHHHHhc-ccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccc-c
Q 007072 180 FPDLQALSLCGNKLETVEI--IVQEVTK-LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWAL-G 255 (619)
Q Consensus 180 ~p~L~~L~Ls~NkL~~~~~--v~~~l~~-L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l-~ 255 (619)
.+.|+.|+|++|.|..... +...+.. .++|+.|+|++|.+.... ...+...+++|+.|+++...-. ..+. .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~----~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG----LRTLLPVFLRARKLGLQLNSLG-PEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH----HHHTHHHHHTEEEEECCSSCCC-HHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH----HHHHHHHHHhccHhhcCCCCCC-HHHHHH
Confidence 4789999999999987652 2223332 279999999999986543 3455666788999998754321 1111 1
Q ss_pred ccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCC
Q 007072 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333 (619)
Q Consensus 256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L 333 (619)
+|... .....+|+.|+|++|.|.......+. ...+++|++|+|++|.|.+..+..+...+..+++|
T Consensus 146 L~~~L------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 146 LRDLL------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHH------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred HHHHH------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 11100 01245799999999999864332220 12688999999999999888777788889999999
Q ss_pred ccccccCCCCCCchh----HHHhhhcCccccc
Q 007072 334 QSLGVDIPGPLGESA----IEILESLPTLCTL 361 (619)
Q Consensus 334 ~sL~ld~p~~l~~~~----~~il~~lp~L~~L 361 (619)
++|++..|.. +... ...+...++|+.|
T Consensus 214 ~~L~Ls~N~i-~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 214 QELNVAYNGA-GDTAALALARAAREHPSLELL 244 (372)
T ss_dssp CEEECCSSCC-CHHHHHHHHHHHHHCSSCCEE
T ss_pred CeEECCCCCC-CHHHHHHHHHHHHhCCCCCEE
Confidence 9999998863 3322 2334456777776
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.64 E-value=8.7e-09 Score=113.08 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=54.6
Q ss_pred cCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC--------CCCCC
Q 007072 275 PLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI--------PGPLG 345 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~--------p~~l~ 345 (619)
.+.+|+.|+|++|.+..... .++. ++++|+.|++++| +.+ ..+..+..++++|++|.+.. ...++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~--~~~~L~~L~l~~~-~~~---~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLC--QCPKLQRLWVLDY-IED---AGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHT--TCTTCCEEEEEGG-GHH---HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHh--cCCCcCEEeCcCc-cCH---HHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 46799999999999663221 2233 7899999999998 432 23455567799999998832 22344
Q ss_pred chh-HHHhhhcCccccc
Q 007072 346 ESA-IEILESLPTLCTL 361 (619)
Q Consensus 346 ~~~-~~il~~lp~L~~L 361 (619)
... ..+...+|+|+.|
T Consensus 361 ~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESV 377 (594)
T ss_dssp HHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhchhHHHH
Confidence 333 3444558888877
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=1.6e-08 Score=104.32 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=85.7
Q ss_pred cEeecCCC-cccchhhHHHHHhcccccceeecCC-CcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 184 QALSLCGN-KLETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 184 ~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
..++++++ .|..+|. +..+++|+.|+|++ |.+....++.
T Consensus 11 ~~v~~~~~n~l~~ip~----l~~~~~L~~L~l~~~n~l~~~~~~~----------------------------------- 51 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH----LPGAENLTELYIENQQHLQHLELRD----------------------------------- 51 (347)
T ss_dssp SCEECCSSCCCTTTTT----SCSCSCCSEEECCSCSSCCEECGGG-----------------------------------
T ss_pred CEEEcCCCCCCCccCC----CCCCCCeeEEEccCCCCCCCcChhH-----------------------------------
Confidence 45799998 9999873 89999999999996 9987765321
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
+..|.+|+.|+|++|.|..+++..|. +|++|+.|+|++|.|..++ ...+..++ |+.|++..|
T Consensus 52 -----------~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~----~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 52 -----------LRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLS----WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp -----------SCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCC----STTTCSCC-CCEEECCSS
T ss_pred -----------hccccCCCEEECCCCccceeCHHHhc--CCcCCCEEeCCCCccceeC----HHHcccCC-ceEEEeeCC
Confidence 12478899999999999999999987 8999999999999999888 34556665 999999888
Q ss_pred CC
Q 007072 342 GP 343 (619)
Q Consensus 342 ~~ 343 (619)
..
T Consensus 114 ~~ 115 (347)
T 2ifg_A 114 PL 115 (347)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=3.2e-08 Score=101.99 Aligned_cols=177 Identities=10% Similarity=0.026 Sum_probs=112.0
Q ss_pred CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccc----ccc-----
Q 007072 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL----KKC----- 223 (619)
Q Consensus 153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~----~~~----- 223 (619)
...++.|.|.+ +|.. ++...|..|++|+.|+|.+|.+..++ ..++.++.++..|.++.+... ...
T Consensus 100 ~~~L~~l~L~~-~i~~---I~~~aF~~~~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKN---IEDAAFKGCDNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp CTTCCC-CBCT-TCCE---ECTTTTTTCTTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cCCCcEEECCc-cccc---hhHHHhhcCcccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67899999999 8888 88899999999999999999987776 456777777776666553210 000
Q ss_pred -------------cch---------------------------hhhHHhhcCCcccccccccccccccccccccccccCC
Q 007072 224 -------------DHC---------------------------MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDK 263 (619)
Q Consensus 224 -------------~~~---------------------------~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~ 263 (619)
.+. -...+...|++|+.++++.++...
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~------------- 240 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT------------- 240 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-------------
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-------------
Confidence 000 011222347888887776432210
Q ss_pred CCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc-ccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 264 DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS-HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 264 ~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~-~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
.|. ..+..+.+|+.|+|++| |..++...|. ++++|+ .|++.+ .+..+. ...|.+|++|++|.+..+.
T Consensus 241 -I~~---~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~----~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 241 -IPD---FTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIE----FGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp -ECT---TTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEEECT-TCCEEC----TTTTTTCTTEEEEEECSSC
T ss_pred -ecH---hhhhCCCCCCEEECCcc-cceehHHHhh--CChhccEEEEEcc-cceEEc----hhhhhCCccCCEEEeCCCc
Confidence 010 11234667888888877 7778877777 788887 888877 666666 4567788888888775443
Q ss_pred CCCchhHHHhhhcCccccc
Q 007072 343 PLGESAIEILESLPTLCTL 361 (619)
Q Consensus 343 ~l~~~~~~il~~lp~L~~L 361 (619)
. ..-....+..+++|+.|
T Consensus 309 i-~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 309 I-TTLGDELFGNGVPSKLI 326 (329)
T ss_dssp C-CEECTTTTCTTCCCCEE
T ss_pred c-CccchhhhcCCcchhhh
Confidence 2 11112335556666554
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.2e-07 Score=97.02 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=80.5
Q ss_pred cCCCCCccE--eecCCCcccchhhHHHHH-hcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccc
Q 007072 177 SSKFPDLQA--LSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWA 253 (619)
Q Consensus 177 ~~~~p~L~~--L~Ls~NkL~~~~~v~~~l-~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~ 253 (619)
+...|+|.. ++++.|++..++.+.+.+ .++++|+.|+||+|.+..... + ...+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~--l-~~~~~-------------------- 193 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD--M-SSIVQ-------------------- 193 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG--G-TTHHH--------------------
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc--c-hhHHh--------------------
Confidence 456677887 788899877777666655 678999999999998776541 0 00111
Q ss_pred ccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCc-cchHHHHHHHhCCC
Q 007072 254 LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQ-NSVRELLEVLKGFP 331 (619)
Q Consensus 254 l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~-i~~~~l~~~l~~~~ 331 (619)
.+.+|+.||||+|.|..+.. ..++ .+ +|+.|+|++|++.. ++
T Consensus 194 ---------------------~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Npl~~~~~------------ 237 (267)
T 3rw6_A 194 ---------------------KAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNSLCDTFR------------ 237 (267)
T ss_dssp ---------------------HSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTSTTGGGCS------------
T ss_pred ---------------------hCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCcCccccC------------
Confidence 25567777777777777633 2222 34 78888888888753 11
Q ss_pred CCccccccCCCCCCchhHHHhhhcCccccccCccch
Q 007072 332 CLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTAS 367 (619)
Q Consensus 332 ~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s 367 (619)
....+...+++.+|+|+.|||..++
T Consensus 238 -----------~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 238 -----------DQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp -----------SHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred -----------cchhHHHHHHHHCcccCeECCcCCC
Confidence 0012335788899999999999886
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=4.3e-07 Score=86.78 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=41.8
Q ss_pred cccccccCccccccCccccc--CCCCCCCCccccc--CCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 278 SVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNI--RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnL--s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|+.|+|++|.|..-....+ .....++|++|+| ++|.|.+.....+...+...++|++|++..+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 45556666666553211100 0114667888888 77888777766677778888888888877664
No 147
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.07 E-value=1e-06 Score=94.27 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=61.2
Q ss_pred EEechhHHHhhcCCCC-E-EecCCCCCccEEEEecccchhHHHhhCC-CCceeeccCCCCchhhhhhHHHHHHHhh
Q 007072 543 VYTDIPYVEEFLTRTE-F-VITTEPKDADIIWTSLQVDEDMKTATGI-TDQQYVNQFPFESCLVMKHHLAETVQKV 615 (619)
Q Consensus 543 Vytd~~~v~~~Lt~~~-F-~lvd~~~eADIiW~~~h~~~d~k~~~~~-~p~~~iNQFP~E~~lt~Kd~La~~~~~~ 615 (619)
++|.|+.|++.|++.. + +++++..++||+|...|.. .|+.+.-. ++.|.||+||+++.||.||.||..++|+
T Consensus 13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~-p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~ 87 (380)
T 3tig_A 13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRL-PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTS 87 (380)
T ss_dssp SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSC-CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCC-CHHHhccCCCcceEEeecCCcccccccHHHHHHHHHh
Confidence 3566788888888888 5 6777889999999998875 78888654 6789999999999999999999999884
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=1.1e-06 Score=93.23 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=103.8
Q ss_pred CceeeeecccCCCCccc---c---ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchh
Q 007072 154 GTVKWLELEDADIGDDM---L---LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227 (619)
Q Consensus 154 ~~l~~L~Ls~~~I~~~~---l---i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~ 227 (619)
..++.|.+..+..+... + ....+...+|+|+.|+|++|.-..++. + .+++|+.|+|..|.+....
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~----~-~~~~L~~L~L~~~~l~~~~---- 209 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK----K-PRPNLKSLEIISGGLPDSV---- 209 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS----C-BCTTCSEEEEECSBCCHHH----
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc----c-cCCCCcEEEEecCCCChHH----
Confidence 47777877654332100 1 011333578999999999983122321 2 4899999999888765322
Q ss_pred hhHHh-hcCCccccccccccccc-c-cccccccccccCCCCCCccccC--CCcCCcccccccCccccccCc-ccccCCCC
Q 007072 228 EDAIL-QGCPKLEIYNSNFTINF-G-EWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLV-NKAFSPAE 301 (619)
Q Consensus 228 ~~~il-~~lP~LeiLn~~~T~n~-~-~~~l~fc~~~~~~~~p~~l~~~--~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~ 301 (619)
...+. ..+|+|+.|++.+..+. + ...+ ..+... ...+++|+.|+|++|.|..-. ..++....
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~------------~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDM------------NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCG------------GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhH------------HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 23333 47999999988643221 1 0000 001110 123678999999999987422 22332225
Q ss_pred CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+|+|+.|+|+.|.|.+.....+..-+.++++|++|++..+.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 89999999999999876654555455678999999988764
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.02 E-value=4.9e-06 Score=89.21 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=53.0
Q ss_pred ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (619)
Q Consensus 155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~ 234 (619)
.++.+.|.. .|.. ++...+.+|++|+.|+|.+|+|+.++ ..++. ..+|+.+.|.+| +.... ...+.+
T Consensus 158 ~L~~i~lp~-~l~~---I~~~aF~~c~~L~~l~l~~n~l~~I~--~~aF~-~~~L~~l~lp~~-l~~I~-----~~aF~~ 224 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQ---LKEDIFYYCYNLKKADLSKTKITKLP--ASTFV-YAGIEEVLLPVT-LKEIG-----SQAFLK 224 (401)
T ss_dssp CCCEEECCT-TCCE---ECSSTTTTCTTCCEEECTTSCCSEEC--TTTTT-TCCCSEEECCTT-CCEEC-----TTTTTT
T ss_pred CceEEEeCC-CccE---ehHHHhhCcccCCeeecCCCcceEec--hhhEe-ecccCEEEeCCc-hheeh-----hhHhhC
Confidence 466666664 4555 66677788888888888888888877 33444 578888888755 44443 345777
Q ss_pred CCcccccccc
Q 007072 235 CPKLEIYNSN 244 (619)
Q Consensus 235 lP~LeiLn~~ 244 (619)
|++|+.+.+.
T Consensus 225 ~~~L~~l~l~ 234 (401)
T 4fdw_A 225 TSQLKTIEIP 234 (401)
T ss_dssp CTTCCCEECC
T ss_pred CCCCCEEecC
Confidence 8888877664
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=2.9e-06 Score=80.95 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=79.4
Q ss_pred CCceeeeecccC-CCCccccccc-cccCCCCCccEeecCCCcccchh--hHHHHHhcccccceeecCCCcccccccchhh
Q 007072 153 DGTVKWLELEDA-DIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCME 228 (619)
Q Consensus 153 ~~~l~~L~Ls~~-~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~--~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~ 228 (619)
...++.|+|++| +|.+.-...+ ......++|+.|+|++|.|.+.. .+...+...++|+.|+|++|.+....-
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~---- 110 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI---- 110 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH----
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH----
Confidence 577888999998 8887322222 11245688899999999887643 345667777889999999988775431
Q ss_pred hHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccccccc--CccccccCcc----cccCCCCC
Q 007072 229 DAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL--SNRCIHNLVN----KAFSPAEM 302 (619)
Q Consensus 229 ~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdL--S~N~I~~Lp~----~~f~~~~L 302 (619)
..+... .....+|+.|+| ++|.|..--. ..+. ..
T Consensus 111 ~~l~~~--------------------------------------L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~--~n 150 (185)
T 1io0_A 111 LALVEA--------------------------------------LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE--KN 150 (185)
T ss_dssp HHHHHG--------------------------------------GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH--HC
T ss_pred HHHHHH--------------------------------------HHhCCCceEEEecCCCCCCCHHHHHHHHHHHH--hC
Confidence 111110 011346788888 7788874322 1222 56
Q ss_pred CCCcccccCCCCCCcc
Q 007072 303 PSLSHLNIRGNPLEQN 318 (619)
Q Consensus 303 ~~L~~LnLs~N~i~~i 318 (619)
++|++|+|++|.|.+-
T Consensus 151 ~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 151 TTLLKFGYHFTQQGPR 166 (185)
T ss_dssp SSCCEEECCCSSHHHH
T ss_pred CCcCEEeccCCCCChH
Confidence 8899999999987643
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=5.5e-06 Score=84.69 Aligned_cols=88 Identities=25% Similarity=0.395 Sum_probs=69.2
Q ss_pred CCCceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccc--hhh
Q 007072 152 GDGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH--CME 228 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~--~~~ 228 (619)
+...++.|+|++|.|.. +.++ ++...+|+|+.|+|++|+|.+++.+ ..+.++ +|+.|+|++||+....+. +..
T Consensus 168 ~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhHH
Confidence 35689999999999998 3332 4556899999999999999998543 344455 999999999999874332 455
Q ss_pred hHHhhcCCccccccc
Q 007072 229 DAILQGCPKLEIYNS 243 (619)
Q Consensus 229 ~~il~~lP~LeiLn~ 243 (619)
..++..||+|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 678899999999984
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.90 E-value=8.9e-06 Score=87.17 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 151 KGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 151 ~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
.|-..|+.+.|++|+|.. ++...+. +.+|+.|.|..| ++.++ ..++.++++|+.+.|.+| +....
T Consensus 177 ~~c~~L~~l~l~~n~l~~---I~~~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITK---LPASTFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp TTCTTCCEEECTTSCCSE---ECTTTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCTT-CCEEC
T ss_pred hCcccCCeeecCCCcceE---echhhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCCC-ccCcc
Confidence 445779999999999888 7777776 689999999855 77776 568899999999999876 44433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.51 E-value=4.3e-05 Score=81.08 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=91.6
Q ss_pred CCCCCccEeecCCCcccch-------hhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccc
Q 007072 178 SKFPDLQALSLCGNKLETV-------EIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFG 250 (619)
Q Consensus 178 ~~~p~L~~L~Ls~NkL~~~-------~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~ 250 (619)
.++|+|++|.+.++..+.. ..+...+..+|+|+.|+|++|.-.... . + .+|+|+.|++..++...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-----~--~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-----K--K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-----S--C-BCTTCSEEEEECSBCCH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-----c--c-cCCCCcEEEEecCCCCh
Confidence 3788999998877643321 124578889999999999988311111 1 1 37888888775332211
Q ss_pred cccccccccccCCCCCCccccCCCcCCcccccccCc--cc------cccCcccccCCCCCCCCcccccCCCCCCccchHH
Q 007072 251 EWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN--RC------IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRE 322 (619)
Q Consensus 251 ~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~--N~------I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~ 322 (619)
.-.-..| ...+++|+.|+|+. |. +..+.. .++...+|+|++|+|++|.+.+.....
T Consensus 208 ~~l~~l~---------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 208 SVVEDIL---------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHHHH---------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred HHHHHHH---------------HccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 0000001 11377899999863 22 222211 232235899999999999986533111
Q ss_pred HHHHHhCCCCCccccccCCCCCCchh-HHHh---hhcCccccc
Q 007072 323 LLEVLKGFPCLQSLGVDIPGPLGESA-IEIL---ESLPTLCTL 361 (619)
Q Consensus 323 l~~~l~~~~~L~sL~ld~p~~l~~~~-~~il---~~lp~L~~L 361 (619)
+.. -..+|+|++|++..|. ++... ..+. ..+++|+.|
T Consensus 272 la~-a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 272 FLE-SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp HHH-CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEE
T ss_pred HHh-CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEE
Confidence 111 1368999999998775 34432 2333 345666665
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=0.0001 Score=71.02 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=68.4
Q ss_pred CCCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcc----cccceeecCCCc-ccccccc
Q 007072 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKL----KNLRALWLNNNP-VLKKCDH 225 (619)
Q Consensus 152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L----~~Lk~L~Ls~Np-i~~~~~~ 225 (619)
+.-.++.|++++|.|.+ ..+.....|++|+.|+|++| .|++.. ...+.++ ++|+.|+|++|+ |...
T Consensus 59 ~~~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~--- 130 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDK--- 130 (176)
T ss_dssp TCCCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHH---
T ss_pred CCceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHH---
Confidence 44579999999999999 55555579999999999999 588765 5667764 589999999997 5543
Q ss_pred hhhhHHhhcCCcccccccccccccc
Q 007072 226 CMEDAILQGCPKLEIYNSNFTINFG 250 (619)
Q Consensus 226 ~~~~~il~~lP~LeiLn~~~T~n~~ 250 (619)
++ . .+..||+|+.|+++.+...+
T Consensus 131 Gl-~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GI-I-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HH-H-HGGGCTTCCEEEEESCTTCC
T ss_pred HH-H-HHhcCCCCCEEECCCCCCCC
Confidence 23 2 34679999999998655443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=5.2e-05 Score=72.97 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=30.3
Q ss_pred CCccEeecCCCcccchhhHHHHHhcccccceeecCCCc
Q 007072 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218 (619)
Q Consensus 181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Np 218 (619)
..|+.|||++|.|++.. ...+.++++|+.|+|++|+
T Consensus 61 ~~L~~LDLs~~~Itd~G--L~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGG--GGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHH--HHHhcCCCCCCEEEeCCCC
Confidence 47999999999988866 4567889999999999986
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.86 E-value=0.0016 Score=63.74 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=34.6
Q ss_pred cccccccCccccccCccccc--CCCCCCCCcccccCCC---CCCccchHHHHHHHhCCCCCccccccCC
Q 007072 278 SVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNIRGN---PLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnLs~N---~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
.|+.|+|+.|.|..--...+ ....-+.|+.|+|++| .|.+.....+...|..-+.|++|.+..+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 45566666666653222111 0113455777777654 3333333345666777778887776544
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.0045 Score=55.99 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=46.6
Q ss_pred eeecccCCCC--ccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072 158 WLELEDADIG--DDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (619)
Q Consensus 158 ~L~Ls~~~I~--~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~ 223 (619)
.++-+++++. . +|.++. ++|+.|+|++|+|+.++ ...+.++++|+.|+|++||+.=-+
T Consensus 12 ~v~Cs~~~L~~~~---vP~~lp---~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWAS---LPTAFP---VDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTT---SCSCCC---TTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCcccc---CCCCCC---cCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCeeccC
Confidence 5677888877 5 553322 47999999999999998 578999999999999999986433
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.81 E-value=0.0066 Score=63.79 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=33.9
Q ss_pred cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (619)
Q Consensus 275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l 338 (619)
.+.+|+.++|.++ +..+....|. ++++|+.+++..| +..+. ...|.+|++|+++.+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~--~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFR--GCTSLSNINFPLS-LRKIG----ANAFQGCINLKKVEL 373 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTT--TCTTCCEECCCTT-CCEEC----TTTBTTCTTCCEEEE
T ss_pred CCCCCCEEEeCCc-ccEEhHHhcc--CCCCCCEEEECcc-ccEeh----HHHhhCCCCCCEEEE
Confidence 3456666666533 6666666665 6666666666655 55554 345666666666654
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.67 E-value=0.0068 Score=54.79 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=40.5
Q ss_pred CcccccccCccccccCcccccCCCCCCCCcccccCCCCCC-ccchHHHHHHHhCC
Q 007072 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE-QNSVRELLEVLKGF 330 (619)
Q Consensus 277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~-~i~~~~l~~~l~~~ 330 (619)
.+|+.|||++|.|+.+|...|. .+++|+.|+|++|++. +=....|..++...
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred cCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 4789999999999999999997 8999999999999873 33333455555443
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.02 Score=55.80 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=55.5
Q ss_pred cccccccCccccccCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC--CCCchh----H
Q 007072 278 SVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG--PLGESA----I 349 (619)
Q Consensus 278 ~L~~LdLS~N~I~~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~--~l~~~~----~ 349 (619)
.|+.|+|++|+|..--...+. ...-+.|+.|+|+.|.|.+.....+...|..-+.|++|+++.+. .++... .
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 455566666665532221110 11468899999999999988888888889999999999998542 455432 3
Q ss_pred HHhhhcCccccc
Q 007072 350 EILESLPTLCTL 361 (619)
Q Consensus 350 ~il~~lp~L~~L 361 (619)
+.+..=++|..|
T Consensus 151 ~aL~~N~tL~~L 162 (197)
T 1pgv_A 151 MAIEENESLLRV 162 (197)
T ss_dssp HHHHHCSSCCEE
T ss_pred HHHHhCCCcCeE
Confidence 444444556554
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.25 E-value=0.021 Score=59.24 Aligned_cols=133 Identities=18% Similarity=0.213 Sum_probs=87.4
Q ss_pred ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (619)
Q Consensus 172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~ 251 (619)
+....+..+.+|..+.+..+ +..+. ..++.++.+|+.+.|..+ +.... ...+..+.+|+.+.+.- +...
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-v~~I~-----~~aF~~~~~l~~i~l~~--~i~~ 276 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-VTSIG-----SFLLQNCTALKTLNFYA--KVKT 276 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT-CCEEC-----TTTTTTCTTCCEEEECC--CCSE
T ss_pred Eeecccccccccceeeeccc-eeEEc--cccccCCccceEEEcCCC-ccEeC-----ccccceeehhccccccc--ccee
Confidence 34445567788888887665 33333 356778888888888766 33333 23456666676554421 1100
Q ss_pred ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331 (619)
Q Consensus 252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~ 331 (619)
+ + ...+..+.+|+.++|.++.+..++...|. ++.+|+.+.|..+ +..+. ...|.+|+
T Consensus 277 i-------------~---~~aF~~c~~L~~i~l~~~~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~----~~aF~~C~ 333 (379)
T 4h09_A 277 V-------------P---YLLCSGCSNLTKVVMDNSAIETLEPRVFM--DCVKLSSVTLPTA-LKTIQ----VYAFKNCK 333 (379)
T ss_dssp E-------------C---TTTTTTCTTCCEEEECCTTCCEECTTTTT--TCTTCCEEECCTT-CCEEC----TTTTTTCT
T ss_pred c-------------c---ccccccccccccccccccccceehhhhhc--CCCCCCEEEcCcc-ccEEH----HHHhhCCC
Confidence 0 0 00122467889999999999999998887 8899999999754 66666 45688999
Q ss_pred CCccccc
Q 007072 332 CLQSLGV 338 (619)
Q Consensus 332 ~L~sL~l 338 (619)
+|+++.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 9998875
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.15 E-value=0.033 Score=58.39 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=82.6
Q ss_pred ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccc-ccc
Q 007072 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTI-NFG 250 (619)
Q Consensus 172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~-n~~ 250 (619)
|.-..|.+|.+|+++.|.. .|+.++ ..++.++++|+.++|.+| +.... ...+.+|++|+.+.+...- ..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~--~~aF~~c~~L~~i~lp~~-l~~I~-----~~aF~~c~~L~~i~~p~~l~~i~ 132 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIG--EFAFENCSKLEIINIPDS-VKMIG-----RCTFSGCYALKSILLPLMLKSIG 132 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEEC--TTTTTTCTTCCEECCCTT-CCEEC-----TTTTTTCTTCCCCCCCTTCCEEC
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcc--hhHhhCCCCCcEEEeCCC-ceEcc-----chhhcccccchhhcccCceeeec
Confidence 5556677788888888864 366665 457778888888888655 33333 3346667777654432110 011
Q ss_pred cccccccccccCCCCCCcc----ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHH
Q 007072 251 EWALGFCGEVYDKDNPSSL----CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326 (619)
Q Consensus 251 ~~~l~fc~~~~~~~~p~~l----~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~ 326 (619)
..+-..|... ....|... ...+..+.+|+.++|.++ +..++...|. ++++|+.+++..| +..+. ...
T Consensus 133 ~~aF~~~~~~-~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~--~c~~L~~i~l~~~-~~~I~----~~~ 203 (394)
T 4fs7_A 133 VEAFKGCDFK-EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFS--GCGKLKSIKLPRN-LKIIR----DYC 203 (394)
T ss_dssp TTTTTTCCCS-EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCBCCCCTT-CCEEC----TTT
T ss_pred ceeeeccccc-ccccCccccccchhhhcccCCCcEEecCCc-cceecccccc--CCCCceEEEcCCC-ceEeC----chh
Confidence 1111111100 00011111 011234567777777644 4567777776 7778888887766 44444 334
Q ss_pred HhCCCCCcccccc
Q 007072 327 LKGFPCLQSLGVD 339 (619)
Q Consensus 327 l~~~~~L~sL~ld 339 (619)
+.+|+.|+.+.+.
T Consensus 204 F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 204 FAECILLENMEFP 216 (394)
T ss_dssp TTTCTTCCBCCCC
T ss_pred hccccccceeecC
Confidence 6777777777644
No 163
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=95.12 E-value=0.011 Score=60.17 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=44.0
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCCccchhhhccccc
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF 497 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~~~~R~a~L~pw~ 497 (619)
.+++-|+||-+||+.+.++. -|.- .-.-.++-++||++|||+|=||-+.......+.+....|+
T Consensus 185 n~aRfiNHSC~PN~~~~~~~-~~~~-----~~~i~i~A~RdI~~GEELt~dYg~~~~~~~~~~~~ap~W~ 248 (261)
T 2f69_A 185 SLGHKANHSFTPNCIYDMFV-HPRF-----GPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWY 248 (261)
T ss_dssp CCGGGCEECSSCSEEEEEEE-ETTT-----EEEEEEEESSCBCTTCEEEECCCCCSCCC-----CSCHHH
T ss_pred cceeeEeeCCCCCeEEEEEE-cCCC-----CcEEEEEECcccCCCCEEEEEcCCccccccccCccCccHH
Confidence 35678999999999998762 2331 2333788999999999999999876655555555555564
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.75 E-value=0.032 Score=57.77 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=83.6
Q ss_pred ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (619)
Q Consensus 172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~ 251 (619)
+....+..+.+|+.+.+..+ ++.++ ..++.++.+|+.+.+..+ +.... ...+.+|++|+.+.+..+... .
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~--~~aF~~~~~l~~i~l~~~-i~~i~-----~~aF~~c~~L~~i~l~~~~i~-~ 300 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIG--SFLLQNCTALKTLNFYAK-VKTVP-----YLLCSGCSNLTKVVMDNSAIE-T 300 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEEC--TTTTTTCTTCCEEEECCC-CSEEC-----TTTTTTCTTCCEEEECCTTCC-E
T ss_pred EccccccCCccceEEEcCCC-ccEeC--ccccceeehhcccccccc-ceecc-----ccccccccccccccccccccc-e
Confidence 55566678888888888766 55554 357788888888888665 33332 345677888887665321110 0
Q ss_pred ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331 (619)
Q Consensus 252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~ 331 (619)
+ + ..-+..+.+|+.++|..+ +..+....|. ++++|+.+.+..+ +..+. ...|.+|+
T Consensus 301 I-------------~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~~-v~~I~----~~aF~~c~ 356 (379)
T 4h09_A 301 L-------------E---PRVFMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPKS-ITLIE----SGAFEGSS 356 (379)
T ss_dssp E-------------C---TTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCTT-CCEEC----TTTTTTSS
T ss_pred e-------------h---hhhhcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECCc-cCEEc----hhHhhCCC
Confidence 0 0 001224668888888754 8888888897 8999999999765 66555 34566765
Q ss_pred CC
Q 007072 332 CL 333 (619)
Q Consensus 332 ~L 333 (619)
.+
T Consensus 357 ~~ 358 (379)
T 4h09_A 357 IT 358 (379)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 165
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=94.61 E-value=0.026 Score=52.78 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=37.2
Q ss_pred cccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCC
Q 007072 429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484 (619)
Q Consensus 429 ~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~ 484 (619)
++.-|+||-.||+.+..+. .+ + ...-.++-++||.+|||+|=||-.+..
T Consensus 107 ~aRfiNHSC~PN~~~~~~~-~~-~-----~~~i~~~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 107 LGRLINHSKCGNCQTKLHD-ID-G-----VPHLILIASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp SGGGCEECTTCSEEEEEEE-ET-T-----EEEEEEEESSCBCTTCBCEECCCCCCH
T ss_pred hhheeecCCCCCeeEEEEE-EC-C-----eeEEEEEECCcCCCCCEEEEEcCCChh
Confidence 3466999999998775432 22 2 566778899999999999999876543
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.30 E-value=0.042 Score=57.55 Aligned_cols=130 Identities=11% Similarity=0.174 Sum_probs=75.8
Q ss_pred ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (619)
Q Consensus 172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~ 251 (619)
+....+..|.+|+.+.|..+.. .+. ..++.++++|+.+.+.. .+.... ...+.+|.+|+.+.+.- +...
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~--~~aF~~c~~L~~i~l~~-~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~ 324 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIG--TGAFMNCPALQDIEFSS-RITELP-----ESVFAGCISLKSIDIPE--GITQ 324 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EEC--TTTTTTCTTCCEEECCT-TCCEEC-----TTTTTTCTTCCEEECCT--TCCE
T ss_pred cccceeeecccccEEecccccc-eec--CcccccccccccccCCC-cccccC-----ceeecCCCCcCEEEeCC--cccE
Confidence 5556778899999999976643 333 36788999999999964 344333 33466777777665431 1100
Q ss_pred ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331 (619)
Q Consensus 252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~ 331 (619)
++ ..-+..+.+|+.+.|..+ +..+....|. ++++|+.+.+.+|... ...+..+.
T Consensus 325 I~----------------~~aF~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~~~~~-------~~~~~~~~ 378 (394)
T 4gt6_A 325 IL----------------DDAFAGCEQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSGSRSQ-------WNAISTDS 378 (394)
T ss_dssp EC----------------TTTTTTCTTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESSCHHH-------HHTCBCCC
T ss_pred eh----------------HhHhhCCCCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECCceee-------hhhhhccC
Confidence 00 001223556777777543 6777777776 7777777777776421 12355666
Q ss_pred CCccccc
Q 007072 332 CLQSLGV 338 (619)
Q Consensus 332 ~L~sL~l 338 (619)
+|++|.+
T Consensus 379 ~L~~i~i 385 (394)
T 4gt6_A 379 GLQNLPV 385 (394)
T ss_dssp CC-----
T ss_pred CCCEEEe
Confidence 6666654
No 167
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=93.82 E-value=0.028 Score=49.95 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.7
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
-+|+.|+||-+||+.... .+. ..--.++-++||.+|||+|=||-...
T Consensus 63 ~~~~~~NHsc~pN~~~~~---~~~------~~~~~~~A~rdI~~GeElt~~Y~~~~ 109 (119)
T 1n3j_A 63 GFGAIFNHSKDPNARHEL---TAG------LKRMRIFTIKPIAIGEEITISYGDDY 109 (119)
T ss_dssp SSHHHHHSCSSCCCEEEE---CSS------SSCEEEEECSCBCSSEEECCCCCCCC
T ss_pred CceeeeccCCCCCeeEEE---ECC------CeEEEEEEccccCCCCEEEEecCchh
Confidence 478999999999998753 222 12234677999999999999986543
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.81 E-value=0.085 Score=55.23 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=82.1
Q ss_pred CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (619)
Q Consensus 182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~ 261 (619)
.+..+.+- +.+..+. ..++.++.+|+.+.|.++-.. . ....+..+++|+.+.+.- ....+
T Consensus 243 ~~~~~~ip-~~v~~i~--~~aF~~c~~L~~i~lp~~~~~-I-----~~~aF~~c~~L~~i~l~~--~i~~I--------- 302 (394)
T 4gt6_A 243 EDPAFKIP-NGVARIE--THAFDSCAYLASVKMPDSVVS-I-----GTGAFMNCPALQDIEFSS--RITEL--------- 302 (394)
T ss_dssp CCSEEECC-TTEEEEC--TTTTTTCSSCCEEECCTTCCE-E-----CTTTTTTCTTCCEEECCT--TCCEE---------
T ss_pred ccceEEcC-CcceEcc--cceeeecccccEEecccccce-e-----cCcccccccccccccCCC--ccccc---------
Confidence 33444443 3344444 357889999999999776532 2 233467788888666531 11000
Q ss_pred CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (619)
Q Consensus 262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p 341 (619)
+. ..+..+.+|+.++|..+ +..+....|. ++.+|+.+.|..+ +..+. ...|.+|++|+++.+..+
T Consensus 303 ----~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~--~C~~L~~i~ip~s-v~~I~----~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 303 ----PE---SVFAGCISLKSIDIPEG-ITQILDDAFA--GCEQLERIAIPSS-VTKIP----ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ----CT---TTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEECTT-CCBCC----GGGGTTCTTCCEEEESSC
T ss_pred ----Cc---eeecCCCCcCEEEeCCc-ccEehHhHhh--CCCCCCEEEECcc-cCEEh----HhHhhCCCCCCEEEECCc
Confidence 00 11224678899999764 8888888887 8999999999654 66666 456899999999987653
No 169
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=91.99 E-value=0.13 Score=50.75 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=38.0
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
.++.-|+||-+||+.+.++.. .+ ..--.+|-++||.+|||+|=||-+.
T Consensus 145 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~ 192 (222)
T 3ope_A 145 NEARFINHSCDPNCEMQKWSV--NG-----VYRIGLYALKDMPAGTELTYDYNFH 192 (222)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECTTSS
T ss_pred ccceeeccCCCCCeEeEEEEE--CC-----eEEEEEEECCccCCCCEEEEECCCc
Confidence 345679999999999876532 22 5666789999999999999998754
No 170
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=91.05 E-value=0.18 Score=50.03 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=37.9
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
.++.-|+||-+||+.+.++.. .+ ..--.+|-++||.+|||+|=||-..
T Consensus 164 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~ 211 (232)
T 3ooi_A 164 NYARFMNHCCQPNCETQKWSV--NG-----DTRVGLFALSDIKAGTELTFNYNLE 211 (232)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECCTTC
T ss_pred cccccccccCCCCeEEEEEEE--CC-----ceEEEEEECCccCCCCEEEEECCCC
Confidence 455779999999998876432 23 4566789999999999999998654
No 171
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=90.80 E-value=0.2 Score=48.53 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=36.8
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
.+++-|+||-+||+.+..+.. .+ ..--+++-++||.+|||+|=||-...
T Consensus 123 n~arfiNHSC~PN~~~~~~~~--~g-----~~~i~i~A~rdI~~GEELt~dY~~~~ 171 (192)
T 2w5y_A 123 NAARFINHSCEPNCYSRVINI--DG-----QKHIVIFAMRKIYRGEELTYDYKFPI 171 (192)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCEEEECCCC--
T ss_pred ChhHhhccCCCCCEEEEEEEE--CC-----cEEEEEEECcccCCCCEEEEEcCCch
Confidence 456679999999998754321 33 45567899999999999999997654
No 172
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=90.77 E-value=0.19 Score=50.73 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.7
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~ 484 (619)
..++-|+||=.||+.++.+ .+ .--.++-++||.+|||+|-||....-
T Consensus 175 ~~ar~iNHSC~PN~~~~~~----~~------~~i~v~A~rdI~~GEElt~~Y~~~~~ 221 (247)
T 3rq4_A 175 GPAAFINHDCKPNCKFVPA----DG------NAACVKVLRDIEPGDEVTCFYGEGFF 221 (247)
T ss_dssp SGGGGCEECSSCSEEEEEE----TT------TEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred chhhhcCCCCCCCEEEEEe----CC------CEEEEEECCcCCCCCEEEEecCchhc
Confidence 5688999999999976543 22 23457889999999999999986543
No 173
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=90.36 E-value=0.19 Score=51.23 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=37.6
Q ss_pred cccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 429 ~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
+++-|+||-+|||.+.++ ..|.. ...-+++-++||.+|||+|-||=+..
T Consensus 240 ~ar~iNHsc~pN~~~~~~-~~~~~-----~~~~~~~a~r~I~~geElt~~Yg~~~ 288 (293)
T 1h3i_A 240 LGHKANHSFTPNCIYDMF-VHPRF-----GPIKCIRTLRAVEADEELTVAYGYDH 288 (293)
T ss_dssp CGGGSEEESSCSEEEEEE-EETTT-----EEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred ceeeeccCCCCCeEEEEE-EcCCC-----CcEEEEEECCccCCCCEEEEecCCCC
Confidence 577899999999998775 33432 22236889999999999999986554
No 174
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=90.34 E-value=0.23 Score=50.89 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=37.1
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
.++.-|+||-+||+.+..+. .+ + ...-.+|-++||.+|||+|=||-+.
T Consensus 189 N~aRFiNHSC~PN~~~~~~~-v~-g-----~~ri~~fA~RdI~~GEELT~dY~~~ 236 (278)
T 3h6l_A 189 NCSRFMNHSCEPNCETQKWT-VN-G-----QLRVGFFTTKLVPSGSELTFDYQFQ 236 (278)
T ss_dssp CGGGGCEECSSCSEEEEEEE-ET-T-----EEEEEEEESSCBCTTCBCEECCTTT
T ss_pred ChhhhcccCCCCCceeEEEE-eC-C-----ceEEEEEECCccCCCCEEEEecCCC
Confidence 45677999999998875442 22 3 4566789999999999999998643
No 175
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=89.27 E-value=0.22 Score=51.43 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=37.4
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
.++.-|+||-+||+.+.+.+.- ..+....--.+|-++||.+|||+|=||-.+.
T Consensus 219 N~arfiNHSC~PN~~~~~~~~~---~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~ 271 (302)
T 1ml9_A 219 GPTRFINHSCDPNMAIFARVGD---HADKHIHDLALFAIKDIPKGTELTFDYVNGL 271 (302)
T ss_dssp CGGGGCEECSSCSEEEEEEESS---GGGGGGCEEEEEESSCBCTTCEEEECTTC--
T ss_pred CHHHhcccCCCCCeeEEEEEec---cCCCCceEEEEEECCCcCCCCEEEEEECCCc
Confidence 4677799999999987643211 0011234567899999999999999997654
No 176
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=89.10 E-value=0.33 Score=50.07 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=38.8
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
.++.-|+||-+||+.+.+.+.- . .+.+..--.+|-++||.+|||+|=||-...
T Consensus 212 N~aRfiNHSC~PN~~~~~v~~~-~--~~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 264 (299)
T 1mvh_A 212 DVSRFFNHSCSPNIAIYSAVRN-H--GFRTIYDLAFFAIKDIQPLEELTFDYAGAK 264 (299)
T ss_dssp CGGGGCEECSSCSEEEEEEESC-T--TCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred ChhheEeecCCCCeEEEEEEee-c--CCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence 4667799999999998765321 1 111244567899999999999999997543
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.14 E-value=0.27 Score=52.85 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCc
Q 007072 395 ADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDE 474 (619)
Q Consensus 395 ~~rV~~~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gde 474 (619)
+-+++..+. +++|.+.... ..++=.-+--.+|.++||-.||+... | .+ .. -+++-++||++|||
T Consensus 172 ~~~~~~~~~--~N~f~i~~~~---~~~~g~~l~~~~s~~NHsC~PN~~~~-~----~~-----~~-~~~~a~r~I~~GeE 235 (429)
T 3qwp_A 172 LFEAFAKVI--CNSFTICNAE---MQEVGVGLYPSISLLNHSCDPNCSIV-F----NG-----PH-LLLRAVRDIEVGEE 235 (429)
T ss_dssp HHHHHHHHH--HHCEEEECTT---SCEEEEEECTTGGGCEECSSCSEEEE-E----ET-----TE-EEEEECSCBCTTCE
T ss_pred HHHHHHHHH--hcCccccccc---cccceEEEchhhHhhCcCCCCCeEEE-E----eC-----CE-EEEEEeeeECCCCE
Confidence 345555555 4467665432 11211222256899999999999874 2 12 22 35778999999999
Q ss_pred cccccccCCCCccchhhhcc
Q 007072 475 CTRDFLYGIGEDKQRSARLT 494 (619)
Q Consensus 475 vTRD~~~~~~~~~~R~a~L~ 494 (619)
+|=+|.....+...|...|.
T Consensus 236 l~isY~~~~~~~~~R~~~L~ 255 (429)
T 3qwp_A 236 LTICYLDMLMTSEERRKQLR 255 (429)
T ss_dssp EEECCSCSSCCHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999876666667776664
No 178
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=87.92 E-value=0.33 Score=50.15 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=38.3
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~ 482 (619)
.++.-|+||-+||+.+.+++.-- .+.+..--.+|-++||.+|||+|=||-+.
T Consensus 214 N~aRfiNHSC~PN~~~~~v~~~~---~d~~~~~i~~~A~rdI~~GEELt~dY~~~ 265 (300)
T 2r3a_A 214 NVSHFVNHSCDPNLQVFNVFIDN---LDTRLPRIALFSTRTINAGEELTFDYQMK 265 (300)
T ss_dssp CGGGGCEECSSCSEEEEEEESSC---CCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred ChHHheecCCCCCEEEEEEEecc---CCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence 36678999999999886654321 11123455788899999999999999754
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=87.84 E-value=0.33 Score=53.24 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCC--CCC---ceEEEEEeeccc
Q 007072 394 LADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGK--LSS---AVSFSILWPIQN 468 (619)
Q Consensus 394 ~~~rV~~~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~--~~~---~~sySllwPi~d 468 (619)
.+-+++..++ +++|.+.... + ..++=.-+--.+|.|+||-.||+.+. |-.... ..+ ...--.++.++|
T Consensus 169 ~l~~~~~~~~--~N~f~i~~~~-g-~~~~g~gl~p~~s~~NHSC~PN~~~~---~~~~~~~~~~~~~~~~~~~~v~A~rd 241 (490)
T 3n71_A 169 YISHIFGVIN--CNGFTLSDQR-G-LQAVGVGIFPNLGLVNHDCWPNCTVI---FNNGNHEAVKSMFHTQMRIELRALGK 241 (490)
T ss_dssp HHHHHHHHHH--TTEEEEECTT-S-CSEEEEEECTTGGGCEECSSCSEEEE---EECCCCSSSCCCGGGSCEEEEEESSC
T ss_pred HHHHHHHHHh--ccCcccccCC-C-CccceEEEchhhhhcccCCCCCeeEE---ecCCccccccccccccceEEEEECCC
Confidence 3445555554 4566665431 1 11222223367899999999999853 222110 000 012567889999
Q ss_pred cCCCCccccccccCCCCccchhhhcc
Q 007072 469 VYKRDECTRDFLYGIGEDKQRSARLT 494 (619)
Q Consensus 469 i~~gdevTRD~~~~~~~~~~R~a~L~ 494 (619)
|+.|||+|=+|.....+...|...|.
T Consensus 242 I~~GEEltisY~~~~~~~~~R~~~L~ 267 (490)
T 3n71_A 242 ISEGEELTVSYIDFLHLSEERRRQLK 267 (490)
T ss_dssp BCTTCBCEECSSCSCSCHHHHHHHHH
T ss_pred CCCCCEEEEeecCCCCCHHHHHHHHH
Confidence 99999999999876655666776664
No 180
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=87.61 E-value=0.35 Score=49.70 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=38.1
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
.++.-|+||-+||+.+.++.. .+ ...--.+|-++||.+|||+|-||-...
T Consensus 204 N~arfiNHSC~PN~~~~~~~~--~~----~~~~i~~~A~rdI~~GEELt~dY~~~~ 253 (290)
T 3bo5_A 204 NIGRFLNHSCEPNLLMIPVRI--DS----MVPKLALFAAKDIVPEEELSYDYSGRY 253 (290)
T ss_dssp CGGGGCEECSSCSEEEEEEES--SS----SSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred CchheeeecCCCCEEEEEEEe--CC----CceEEEEEEccccCCCCEEEEECCCcc
Confidence 566779999999999876532 11 133457889999999999999997543
No 181
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=87.05 E-value=0.46 Score=48.74 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=38.0
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccccc
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~ 481 (619)
.++.-|+||-+||+.+..++..-. +.+..--.+|-++||.+|||+|=||-.
T Consensus 215 N~aRFiNHSC~PN~~~~~v~~~~~---d~~~~~i~~~A~RdI~~GEELT~dYg~ 265 (287)
T 3hna_A 215 NVSRFINHHCEPNLVPVRVFMAHQ---DLRFPRIAFFSTRLIEAGEQLGFDYGE 265 (287)
T ss_dssp CGGGGCEECSSCSEEEEEEESSCC---CTTCCEEEEEESSCBCTTCBCEECCCH
T ss_pred CchheeeecCCCCceeEEEEEecC---CCCceeEEEEEcceeCCCCeEEEeCCC
Confidence 567778999999998766543221 112456678889999999999999853
No 182
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=86.82 E-value=0.36 Score=49.37 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (619)
Q Consensus 428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~ 483 (619)
..++-|+||=+||+.++. .+ ..--.++-++||++|||+|-||....
T Consensus 204 ~~arfiNHSC~PN~~~~~-----~~-----~~~i~i~A~RdI~~GEELt~~Y~~~~ 249 (273)
T 3s8p_A 204 GPAAFINHDCRPNCKFVS-----TG-----RDTACVKALRDIEPGEEISCYYGDGF 249 (273)
T ss_dssp SGGGGCEECSSCSEEEEE-----EE-----TTEEEEEESSCBCTTCBCEECCCTTT
T ss_pred chHHhhCCCCCCCeEEEE-----cC-----CCEEEEEECceeCCCCEEEEecCchh
Confidence 457889999999998631 22 11346888999999999999997554
No 183
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=85.39 E-value=0.46 Score=51.30 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=50.7
Q ss_pred hceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCC
Q 007072 406 LMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGE 485 (619)
Q Consensus 406 ~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~ 485 (619)
+++|.+.... ..++=.-+--.+|.++||-.||+... | .+ .. -.++.++||..|||+|=+|.....+
T Consensus 181 ~N~f~i~~~~---~~~~g~gl~p~~s~~NHsC~PN~~~~-~----~~-----~~-~~~~a~r~I~~Geel~i~Y~~~~~~ 246 (433)
T 3qww_A 181 CNGFTIEDEE---LSHLGSAIFPDVALMNHSCCPNVIVT-Y----KG-----TL-AEVRAVQEIHPGDEVFTSYIDLLYP 246 (433)
T ss_dssp HHCEEEECTT---CCEEEEEECTTGGGSEECSSCSEEEE-E----ET-----TE-EEEEESSCBCTTCEEEECCSCTTSC
T ss_pred CCceecccCC---ccceeEEecccccccCCCCCCCceEE-E----cC-----CE-EEEEeccCcCCCCEEEEeecCCcCC
Confidence 4567665432 11211223357899999999998763 2 22 12 3688999999999999999876655
Q ss_pred ccchhhhcc
Q 007072 486 DKQRSARLT 494 (619)
Q Consensus 486 ~~~R~a~L~ 494 (619)
...|...|.
T Consensus 247 ~~~R~~~L~ 255 (433)
T 3qww_A 247 TEDRNDRLR 255 (433)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666776664
No 184
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=83.55 E-value=0.77 Score=42.64 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=35.0
Q ss_pred eEecccc-------ccccccCCCC---CceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccccc
Q 007072 423 WYVMDEL-------GSAVRHSDEP---NFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481 (619)
Q Consensus 423 WYvmDE~-------GsaI~HSd~P---N~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~ 481 (619)
||+.|-. +.-|+||-+| |+.++.. .+ --.++-+|||.+|||+|=||-.
T Consensus 86 ~~~IDa~~~~~gn~~RfINhSc~p~eqNl~~~~~----~~-------~I~~~A~RdI~~GEEL~~dY~~ 143 (149)
T 2qpw_A 86 WMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEI----NR-------AIYYKTLKPIAPGEELLVWYNG 143 (149)
T ss_dssp EEEEECSSGGGSCGGGGCEECBTTBTCCEEEEEE----TT-------EEEEEESSCBCTTCBCEECCCC
T ss_pred eEEEeCCCCCCCcceeeeeccCChhhcCEEEEEE----CC-------EEEEEEccCCCCCCEEEEccCC
Confidence 6666654 4568999999 8876321 22 2257889999999999999853
No 185
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.04 E-value=34 Score=29.07 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=36.7
Q ss_pred ccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG 342 (619)
Q Consensus 286 ~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~ 342 (619)
+..+..+....|. ++.+|+.+.|-.+ +..+. ...|.+|.+|+++.+....
T Consensus 5 g~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig----~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFA--GNTVIREITVQPN-IGLLY----DGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTT--TCTTCCCEEECTT-SSCCC----TTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhc--CCCCCcEEEcCCc-hheEc----HHHHhccCCccEEEEcCCC
Confidence 3457778788887 8889999998765 33444 3458899999999886543
Done!