Query 007074
Match_columns 619
No_of_seqs 331 out of 1495
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 18:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14096 pgi glucose-6-phospha 100.0 3E-151 7E-156 1244.1 57.6 528 75-610 1-528 (528)
2 KOG2446 Glucose-6-phosphate is 100.0 2E-127 4E-132 1006.0 30.5 477 68-554 25-533 (546)
3 PLN02649 glucose-6-phosphate i 100.0 5E-121 1E-125 1013.1 46.9 457 67-540 27-526 (560)
4 PTZ00430 glucose-6-phosphate i 100.0 2E-120 4E-125 1006.2 45.7 457 67-542 22-523 (552)
5 PRK14095 pgi glucose-6-phospha 100.0 3E-120 7E-125 999.3 45.4 457 68-541 27-512 (533)
6 PRK00179 pgi glucose-6-phospha 100.0 2E-119 3E-124 1000.0 47.6 461 67-541 24-522 (548)
7 PF00342 PGI: Phosphoglucose i 100.0 6E-112 1E-116 932.6 33.5 436 99-541 1-468 (486)
8 COG0166 Pgi Glucose-6-phosphat 100.0 1E-100 3E-105 830.5 35.8 419 95-541 3-431 (446)
9 PRK14097 pgi glucose-6-phospha 100.0 6.5E-99 1E-103 822.1 42.0 409 94-541 2-434 (448)
10 PRK00973 glucose-6-phosphate i 100.0 5.1E-98 1E-102 813.0 43.4 402 95-541 2-429 (446)
11 PRK03868 glucose-6-phosphate i 100.0 1.8E-93 3.9E-98 772.2 38.4 341 189-540 57-408 (410)
12 PRK09533 bifunctional transald 100.0 5.9E-70 1.3E-74 630.9 35.6 335 160-544 435-772 (948)
13 cd05016 SIS_PGI_2 Phosphogluco 100.0 9.5E-52 2.1E-56 396.9 14.8 163 374-538 1-164 (164)
14 PRK08674 bifunctional phosphog 100.0 6.4E-38 1.4E-42 331.9 24.3 291 189-536 33-336 (337)
15 cd05015 SIS_PGI_1 Phosphogluco 100.0 3.6E-34 7.8E-39 273.3 16.7 155 163-329 2-158 (158)
16 cd05798 SIS_TAL_PGI SIS_TAL_PG 100.0 4.7E-33 1E-37 256.9 9.7 129 375-538 1-129 (129)
17 TIGR02128 G6PI_arch bifunction 99.8 3.1E-16 6.8E-21 165.2 26.1 282 190-534 21-306 (308)
18 cd05017 SIS_PGI_PMI_1 The memb 99.3 1.7E-11 3.7E-16 111.5 11.9 111 192-322 1-111 (119)
19 PRK11382 frlB fructoselysine-6 98.7 1E-07 2.2E-12 102.0 13.4 159 160-347 24-187 (340)
20 TIGR02815 agaS_fam putative su 98.5 2.7E-07 5.9E-12 100.0 9.4 117 162-298 24-141 (372)
21 COG2222 AgaS Predicted phospho 98.5 6.3E-07 1.4E-11 96.2 11.4 110 163-296 22-132 (340)
22 cd05710 SIS_1 A subgroup of th 98.4 7.2E-07 1.6E-11 81.5 7.8 115 192-329 1-116 (120)
23 cd05008 SIS_GlmS_GlmD_1 SIS (S 98.4 2.8E-06 6.1E-11 77.0 10.2 91 192-297 1-92 (126)
24 cd05006 SIS_GmhA Phosphoheptos 98.3 5.7E-06 1.2E-10 80.2 12.2 126 165-315 16-160 (177)
25 cd05005 SIS_PHI Hexulose-6-pho 98.2 1.3E-05 2.8E-10 77.9 11.8 100 165-296 20-120 (179)
26 PRK15482 transcriptional regul 98.2 4.4E-05 9.5E-10 79.5 15.3 112 166-309 123-235 (285)
27 TIGR03127 RuMP_HxlB 6-phospho 98.2 1.5E-05 3.3E-10 77.2 11.1 99 166-296 18-117 (179)
28 cd05013 SIS_RpiR RpiR-like pro 98.2 5.6E-05 1.2E-09 68.4 14.1 112 167-310 2-114 (139)
29 cd05014 SIS_Kpsf KpsF-like pro 98.1 8.6E-06 1.9E-10 74.0 7.8 91 192-297 2-93 (128)
30 PRK11337 DNA-binding transcrip 98.1 6.6E-05 1.4E-09 78.3 15.3 112 166-309 128-240 (292)
31 PRK13938 phosphoheptose isomer 98.1 6E-05 1.3E-09 75.2 14.0 106 191-311 46-168 (196)
32 TIGR00441 gmhA phosphoheptose 98.0 4E-05 8.7E-10 73.1 11.3 107 191-314 12-137 (154)
33 COG1737 RpiR Transcriptional r 98.0 5.2E-05 1.1E-09 79.3 12.6 106 165-297 117-223 (281)
34 PRK11543 gutQ D-arabinose 5-ph 98.0 2.8E-05 6.1E-10 81.9 10.2 106 166-297 29-135 (321)
35 PRK11557 putative DNA-binding 98.0 5E-05 1.1E-09 78.5 11.5 105 166-297 116-221 (278)
36 PRK11302 DNA-binding transcrip 98.0 8.5E-05 1.8E-09 76.8 13.0 105 165-296 115-219 (284)
37 PF01380 SIS: SIS domain SIS d 98.0 3E-05 6.6E-10 70.1 8.2 101 190-309 5-106 (131)
38 PRK10886 DnaA initiator-associ 97.9 0.00012 2.6E-09 73.1 12.8 107 191-310 42-166 (196)
39 PLN02981 glucosamine:fructose- 97.9 0.00011 2.5E-09 85.6 13.0 93 189-296 362-455 (680)
40 PRK13937 phosphoheptose isomer 97.8 0.00018 3.9E-09 70.9 11.7 103 191-310 39-160 (188)
41 PRK10892 D-arabinose 5-phospha 97.8 0.00024 5.2E-09 75.2 13.5 105 167-297 35-140 (326)
42 PRK00414 gmhA phosphoheptose i 97.8 0.00024 5.3E-09 70.4 12.5 102 191-309 45-164 (192)
43 COG0794 GutQ Predicted sugar p 97.8 0.00016 3.4E-09 72.5 10.6 97 192-308 41-138 (202)
44 TIGR01135 glmS glucosamine--fr 97.8 0.00011 2.3E-09 84.6 10.4 95 188-297 289-384 (607)
45 PRK13936 phosphoheptose isomer 97.7 0.00065 1.4E-08 67.5 13.6 108 191-311 44-169 (197)
46 cd04795 SIS SIS domain. SIS (S 97.7 0.00024 5.3E-09 59.8 9.0 80 193-286 1-81 (87)
47 PTZ00295 glucosamine-fructose- 97.7 0.0001 2.2E-09 85.4 8.6 94 189-297 321-415 (640)
48 PRK14101 bifunctional glucokin 97.6 0.0007 1.5E-08 78.5 14.6 105 166-297 456-560 (638)
49 PRK00331 glucosamine--fructose 97.6 0.00011 2.3E-09 84.5 7.7 94 189-297 288-382 (604)
50 PTZ00394 glucosamine-fructose- 97.6 0.00033 7.1E-09 81.7 11.6 93 189-296 353-446 (670)
51 TIGR00393 kpsF KpsF/GutQ famil 97.4 0.00067 1.5E-08 69.5 9.6 90 192-296 2-92 (268)
52 PRK05441 murQ N-acetylmuramic 97.2 0.0033 7.2E-08 66.6 12.2 45 244-296 131-176 (299)
53 cd05007 SIS_Etherase N-acetylm 97.1 0.0051 1.1E-07 63.8 12.5 97 191-296 50-163 (257)
54 cd05009 SIS_GlmS_GlmD_2 SIS (S 97.1 0.003 6.5E-08 58.7 9.2 112 167-310 2-114 (153)
55 PRK12570 N-acetylmuramic acid- 97.1 0.0068 1.5E-07 64.3 12.9 45 244-296 127-172 (296)
56 TIGR00274 N-acetylmuramic acid 96.9 0.0068 1.5E-07 64.1 10.8 45 244-296 126-171 (291)
57 PRK02947 hypothetical protein; 96.9 0.0053 1.1E-07 63.2 9.8 46 244-297 106-163 (246)
58 COG0449 GlmS Glucosamine 6-pho 96.3 0.011 2.3E-07 67.9 7.9 139 188-348 281-436 (597)
59 PF13580 SIS_2: SIS domain; PD 95.4 0.085 1.8E-06 49.4 8.8 86 191-287 36-138 (138)
60 COG0279 GmhA Phosphoheptose is 94.2 1 2.2E-05 44.2 12.9 108 191-314 42-167 (176)
61 PTZ00295 glucosamine-fructose- 94.1 0.87 1.9E-05 53.2 14.6 122 165-317 483-605 (640)
62 PRK14503 mannosyl-3-phosphogly 85.5 2.7 5.9E-05 45.9 7.7 199 203-422 41-250 (393)
63 KOG1268 Glucosamine 6-phosphat 81.3 4 8.6E-05 46.6 7.1 186 189-401 354-558 (670)
64 PF13412 HTH_24: Winged helix- 78.2 6.4 0.00014 29.9 5.4 41 541-589 4-44 (48)
65 PF08784 RPA_C: Replication pr 77.5 5.3 0.00011 35.4 5.5 53 537-593 44-96 (102)
66 PF08100 Dimerisation: Dimeris 76.1 4.2 9.1E-05 32.3 3.9 40 544-587 10-51 (51)
67 PF08279 HTH_11: HTH domain; 72.9 11 0.00024 29.3 5.6 47 542-597 2-48 (55)
68 PRK09533 bifunctional transald 71.9 31 0.00066 42.6 11.6 120 371-505 820-941 (948)
69 TIGR02460 osmo_MPGsynth mannos 71.6 13 0.00028 40.7 7.4 200 202-422 39-249 (381)
70 COG4821 Uncharacterized protei 70.1 55 0.0012 33.6 10.9 35 245-287 105-139 (243)
71 PF09339 HTH_IclR: IclR helix- 69.0 6 0.00013 30.8 3.3 39 544-589 7-45 (52)
72 smart00420 HTH_DEOR helix_turn 68.9 21 0.00045 26.6 6.3 41 542-590 2-42 (53)
73 cd02071 MM_CoA_mut_B12_BD meth 68.9 93 0.002 28.4 11.9 67 201-276 12-79 (122)
74 PF02796 HTH_7: Helix-turn-hel 64.4 10 0.00022 28.8 3.7 32 543-584 12-43 (45)
75 COG2103 Predicted sugar phosph 63.7 1E+02 0.0022 32.9 11.9 45 244-296 129-174 (298)
76 COG3357 Predicted transcriptio 63.5 14 0.00031 32.9 4.8 44 540-589 3-46 (97)
77 PF04703 FaeA: FaeA-like prote 63.4 14 0.00031 30.5 4.6 42 543-591 3-44 (62)
78 PRK09954 putative kinase; Prov 62.3 17 0.00037 39.0 6.4 64 541-617 4-71 (362)
79 PHA02943 hypothetical protein; 61.9 28 0.0006 34.0 6.9 49 533-590 4-52 (165)
80 smart00550 Zalpha Z-DNA-bindin 61.5 21 0.00045 29.6 5.3 44 541-590 7-50 (68)
81 PRK14502 bifunctional mannosyl 60.3 36 0.00078 40.6 8.8 196 205-422 47-253 (694)
82 PF01978 TrmB: Sugar-specific 60.2 13 0.00029 30.2 4.0 43 540-590 8-50 (68)
83 PRK02261 methylaspartate mutas 59.4 1.6E+02 0.0034 27.8 11.6 104 192-306 5-118 (137)
84 PF08220 HTH_DeoR: DeoR-like h 58.5 26 0.00056 28.0 5.2 42 542-591 2-43 (57)
85 COG1660 Predicted P-loop-conta 57.5 94 0.002 33.1 10.4 131 192-349 3-138 (286)
86 cd02201 FtsZ_type1 FtsZ is a G 57.2 28 0.00061 37.0 6.8 39 192-233 2-40 (304)
87 PF09488 Osmo_MPGsynth: Mannos 56.9 1.1E+02 0.0023 34.0 11.0 183 203-422 40-249 (381)
88 PRK13010 purU formyltetrahydro 56.1 33 0.00071 36.6 7.0 138 245-449 94-231 (289)
89 cd01485 E1-1_like Ubiquitin ac 56.1 42 0.0009 33.5 7.5 21 191-213 20-40 (198)
90 PRK13018 cell division protein 55.5 37 0.00081 37.6 7.6 122 191-323 29-168 (378)
91 PF03668 ATP_bind_2: P-loop AT 54.7 1.2E+02 0.0025 32.6 10.7 95 191-296 2-100 (284)
92 TIGR02370 pyl_corrinoid methyl 54.5 1.1E+02 0.0024 30.4 10.2 76 192-276 86-164 (197)
93 smart00346 HTH_ICLR helix_turn 54.3 35 0.00075 28.8 5.7 45 542-595 7-51 (91)
94 TIGR00065 ftsZ cell division p 53.7 1.9E+02 0.004 31.8 12.5 122 191-323 18-157 (349)
95 PF01726 LexA_DNA_bind: LexA D 52.2 16 0.00035 30.3 3.2 51 537-589 3-53 (65)
96 PF13460 NAD_binding_10: NADH( 52.0 1.1E+02 0.0023 28.9 9.3 84 193-288 1-99 (183)
97 PF01339 CheB_methylest: CheB 50.5 10 0.00023 37.4 2.1 62 195-258 1-64 (182)
98 PF09012 FeoC: FeoC like trans 50.2 30 0.00064 28.6 4.5 41 543-591 3-43 (69)
99 COG0206 FtsZ Cell division GTP 49.7 2.4E+02 0.0052 31.0 12.4 121 191-323 12-151 (338)
100 PF02698 DUF218: DUF218 domain 49.4 56 0.0012 30.5 6.8 52 229-288 56-107 (155)
101 cd02191 FtsZ FtsZ is a GTPase 47.8 67 0.0014 34.4 7.8 121 192-323 2-140 (303)
102 PF12324 HTH_15: Helix-turn-he 47.3 36 0.00079 29.5 4.6 40 540-587 24-63 (77)
103 cd02202 FtsZ_type2 FtsZ is a G 46.8 1.9E+02 0.004 31.7 11.2 42 192-236 2-48 (349)
104 cd06259 YdcF-like YdcF-like. Y 46.6 1.4E+02 0.0031 27.6 9.0 35 248-288 70-104 (150)
105 PRK06027 purU formyltetrahydro 46.3 54 0.0012 34.8 6.8 138 245-449 90-227 (286)
106 PRK09330 cell division protein 45.5 81 0.0017 35.1 8.2 122 191-323 14-153 (384)
107 TIGR03826 YvyF flagellar opero 44.9 52 0.0011 31.5 5.8 46 533-584 23-68 (137)
108 TIGR02716 C20_methyl_CrtF C-20 44.0 27 0.00058 36.8 4.1 40 542-590 12-51 (306)
109 PRK05294 carB carbamoyl phosph 43.9 37 0.00081 42.4 5.9 35 188-224 5-47 (1066)
110 COG0569 TrkA K+ transport syst 43.5 1E+02 0.0022 31.3 8.1 84 192-298 2-89 (225)
111 PF10432 bact-PGI_C: Bacterial 43.1 3.1E+02 0.0068 26.4 12.2 147 353-535 4-154 (155)
112 cd06445 ATase The DNA repair p 42.7 50 0.0011 28.1 4.8 43 542-587 2-44 (79)
113 PF04539 Sigma70_r3: Sigma-70 42.5 65 0.0014 26.7 5.5 41 535-585 3-43 (78)
114 cd07153 Fur_like Ferric uptake 42.5 55 0.0012 29.1 5.4 44 542-590 3-49 (116)
115 smart00344 HTH_ASNC helix_turn 41.6 58 0.0013 28.6 5.3 42 541-590 4-45 (108)
116 PRK00994 F420-dependent methyl 40.8 2.8E+02 0.006 29.3 10.5 125 203-338 13-145 (277)
117 PRK06179 short chain dehydroge 40.4 3.4E+02 0.0074 27.2 11.4 62 191-253 5-83 (270)
118 TIGR01369 CPSaseII_lrg carbamo 40.2 63 0.0014 40.4 7.1 17 188-204 4-20 (1050)
119 COG1927 Mtd Coenzyme F420-depe 39.9 3.6E+02 0.0077 28.0 10.9 129 193-338 5-145 (277)
120 cd00092 HTH_CRP helix_turn_hel 39.3 74 0.0016 25.1 5.1 30 558-589 23-52 (67)
121 PRK12815 carB carbamoyl phosph 39.3 64 0.0014 40.5 6.9 35 188-224 5-47 (1068)
122 PRK13011 formyltetrahydrofolat 38.9 84 0.0018 33.4 6.9 55 245-308 90-144 (286)
123 PF01022 HTH_5: Bacterial regu 38.7 64 0.0014 24.5 4.4 39 542-589 4-42 (47)
124 smart00419 HTH_CRP helix_turn_ 38.1 44 0.00096 24.5 3.4 30 559-590 7-36 (48)
125 COG1522 Lrp Transcriptional re 37.5 81 0.0018 29.3 5.9 52 540-599 8-61 (154)
126 TIGR00589 ogt O-6-methylguanin 37.4 83 0.0018 27.2 5.4 43 540-585 2-44 (80)
127 PF01035 DNA_binding_1: 6-O-me 37.4 49 0.0011 28.7 4.0 43 540-585 2-44 (85)
128 TIGR00498 lexA SOS regulatory 37.0 95 0.0021 30.5 6.6 63 540-607 6-68 (199)
129 cd02067 B12-binding B12 bindin 36.7 1.5E+02 0.0034 26.4 7.4 89 201-301 12-103 (119)
130 PF13404 HTH_AsnC-type: AsnC-t 36.4 1E+02 0.0022 23.3 5.1 37 542-586 5-41 (42)
131 PF02254 TrkA_N: TrkA-N domain 36.3 2.4E+02 0.0052 24.6 8.5 18 193-212 1-18 (116)
132 PF02082 Rrf2: Transcriptional 35.5 64 0.0014 27.4 4.4 42 544-590 12-53 (83)
133 PF01475 FUR: Ferric uptake re 35.2 74 0.0016 28.7 5.1 46 540-590 8-56 (120)
134 TIGR01214 rmlD dTDP-4-dehydror 35.0 3.3E+02 0.0072 27.5 10.4 55 193-254 2-61 (287)
135 PRK10906 DNA-binding transcrip 34.5 77 0.0017 32.9 5.7 44 540-591 5-48 (252)
136 cd07377 WHTH_GntR Winged helix 34.3 1.5E+02 0.0033 22.9 6.2 28 561-590 26-53 (66)
137 TIGR02531 yecD_yerC TrpR-relat 34.3 69 0.0015 28.3 4.4 35 541-585 39-73 (88)
138 PF01993 MTD: methylene-5,6,7, 33.7 1.7E+02 0.0038 30.8 7.8 109 203-323 12-132 (276)
139 cd02069 methionine_synthase_B1 33.4 2.1E+02 0.0046 29.0 8.5 76 192-276 90-168 (213)
140 KOG0023 Alcohol dehydrogenase, 32.9 2.4E+02 0.0051 31.1 9.0 20 191-212 183-202 (360)
141 TIGR00655 PurU formyltetrahydr 32.7 66 0.0014 34.1 4.9 56 245-309 85-140 (280)
142 smart00345 HTH_GNTR helix_turn 32.7 72 0.0016 24.3 4.0 31 557-589 16-47 (60)
143 cd01492 Aos1_SUMO Ubiquitin ac 32.6 73 0.0016 31.7 5.0 32 191-226 22-53 (197)
144 cd06215 FNR_iron_sulfur_bindin 32.2 98 0.0021 30.6 5.8 63 191-254 104-171 (231)
145 TIGR01501 MthylAspMutase methy 32.1 4.5E+02 0.0098 25.0 11.1 94 202-306 15-116 (134)
146 PF05377 FlaC_arch: Flagella a 31.9 48 0.001 27.0 2.8 20 498-523 35-54 (55)
147 PF00325 Crp: Bacterial regula 31.8 59 0.0013 23.5 3.0 28 560-589 2-29 (32)
148 PF06792 UPF0261: Uncharacteri 31.7 3.2E+02 0.0069 30.8 10.1 29 374-402 306-334 (403)
149 PLN02735 carbamoyl-phosphate s 31.5 92 0.002 39.3 6.5 115 188-310 21-189 (1102)
150 PRK13509 transcriptional repre 31.5 1.1E+02 0.0023 31.7 6.2 43 540-590 5-47 (251)
151 PF13936 HTH_38: Helix-turn-he 30.9 78 0.0017 24.0 3.7 23 560-584 20-42 (44)
152 PF05673 DUF815: Protein of un 30.9 4.7E+02 0.01 27.6 10.6 169 161-343 32-206 (249)
153 PF12840 HTH_20: Helix-turn-he 30.9 1E+02 0.0023 24.5 4.7 41 541-589 11-51 (61)
154 PRK11169 leucine-responsive tr 30.0 86 0.0019 30.2 4.8 56 535-598 9-66 (164)
155 COG1434 Uncharacterized conser 29.4 2.6E+02 0.0056 27.6 8.3 108 191-308 66-180 (223)
156 PRK08264 short chain dehydroge 29.3 5.4E+02 0.012 25.1 11.3 60 191-253 7-83 (238)
157 PF02887 PK_C: Pyruvate kinase 29.3 50 0.0011 29.8 2.9 39 246-296 18-56 (117)
158 PRK14573 bifunctional D-alanyl 29.2 2.7E+02 0.0059 33.7 9.9 33 190-226 4-36 (809)
159 PRK01710 murD UDP-N-acetylmura 29.0 1.7E+02 0.0037 32.7 7.7 31 191-226 15-45 (458)
160 TIGR00678 holB DNA polymerase 28.6 3.3E+02 0.0072 26.2 8.7 63 191-253 64-134 (188)
161 smart00418 HTH_ARSR helix_turn 28.4 94 0.002 23.5 4.0 29 559-589 9-37 (66)
162 PRK04217 hypothetical protein; 28.2 1.5E+02 0.0033 27.3 5.8 34 542-584 47-80 (110)
163 COG3355 Predicted transcriptio 27.9 89 0.0019 29.6 4.3 30 559-590 41-70 (126)
164 TIGR02431 pcaR_pcaU beta-ketoa 27.8 1.4E+02 0.003 30.4 6.2 44 544-596 13-56 (248)
165 COG3695 Predicted methylated D 27.8 1.6E+02 0.0035 26.9 5.7 60 540-602 6-70 (103)
166 PRK11639 zinc uptake transcrip 27.7 76 0.0016 31.0 4.0 45 541-590 27-74 (169)
167 cd02070 corrinoid_protein_B12- 27.7 6.1E+02 0.013 25.1 12.7 75 192-275 84-161 (201)
168 PF02719 Polysacc_synt_2: Poly 27.6 1E+02 0.0022 33.1 5.2 43 193-239 1-43 (293)
169 cd06211 phenol_2-monooxygenase 27.4 2.4E+02 0.0053 28.2 7.8 63 191-254 110-177 (238)
170 PRK00331 glucosamine--fructose 27.2 7.7E+02 0.017 28.7 12.8 121 166-318 449-570 (604)
171 TIGR02010 IscR iron-sulfur clu 27.0 1.1E+02 0.0023 28.6 4.7 42 544-590 12-53 (135)
172 cd01483 E1_enzyme_family Super 26.5 79 0.0017 29.2 3.8 31 192-226 1-31 (143)
173 PLN02828 formyltetrahydrofolat 26.1 1.2E+02 0.0027 32.0 5.5 56 245-309 71-131 (268)
174 PLN02331 phosphoribosylglycina 26.1 1.8E+02 0.0038 29.6 6.4 141 247-449 2-145 (207)
175 COG4261 Predicted acyltransfer 25.5 1.4E+02 0.003 31.7 5.5 67 200-269 121-188 (309)
176 PRK06222 ferredoxin-NADP(+) re 25.1 3.2E+02 0.0068 28.5 8.3 47 191-240 99-149 (281)
177 PRK10434 srlR DNA-bindng trans 25.0 1.4E+02 0.0031 30.9 5.7 43 540-590 5-47 (256)
178 COG2344 AT-rich DNA-binding pr 24.9 5.4E+02 0.012 26.4 9.3 40 188-230 82-121 (211)
179 PRK02006 murD UDP-N-acetylmura 24.7 4.1E+02 0.009 30.0 9.8 31 191-226 8-38 (498)
180 PF13730 HTH_36: Helix-turn-he 24.7 2.7E+02 0.0058 21.4 5.9 45 543-589 8-52 (55)
181 PTZ00394 glucosamine-fructose- 24.3 2.3E+02 0.0049 33.8 7.8 101 189-309 525-628 (670)
182 TIGR02944 suf_reg_Xantho FeS a 24.1 1.4E+02 0.003 27.4 4.9 41 544-590 13-53 (130)
183 PRK10494 hypothetical protein; 24.1 2.5E+02 0.0055 29.3 7.3 69 230-310 140-210 (259)
184 smart00421 HTH_LUXR helix_turn 23.9 2E+02 0.0044 21.2 5.1 25 560-586 18-42 (58)
185 COG1386 scpB Chromosome segreg 23.9 2E+02 0.0043 28.8 6.2 52 539-596 7-60 (184)
186 PRK09802 DNA-binding transcrip 23.8 1.7E+02 0.0037 30.6 6.1 47 536-590 13-59 (269)
187 PF13660 DUF4147: Domain of un 23.7 1.6E+02 0.0036 30.6 5.8 124 189-318 39-200 (238)
188 TIGR02844 spore_III_D sporulat 23.7 1.4E+02 0.0031 26.0 4.5 37 538-583 4-40 (80)
189 PF14606 Lipase_GDSL_3: GDSL-l 23.6 3.4E+02 0.0073 27.1 7.7 60 191-252 34-100 (178)
190 PRK15116 sulfur acceptor prote 23.6 3.2E+02 0.0069 28.9 8.0 18 191-210 31-48 (268)
191 PF01370 Epimerase: NAD depend 23.4 4.5E+02 0.0099 25.3 8.7 33 220-255 45-77 (236)
192 TIGR00122 birA_repr_reg BirA b 23.2 2.3E+02 0.005 23.0 5.6 37 544-589 4-40 (69)
193 TIGR00738 rrf2_super rrf2 fami 22.8 1.3E+02 0.0028 27.4 4.4 30 559-590 24-53 (132)
194 cd00322 FNR_like Ferredoxin re 22.6 4.1E+02 0.0089 25.7 8.2 63 190-253 97-164 (223)
195 PF02742 Fe_dep_repr_C: Iron d 22.6 79 0.0017 26.3 2.7 61 529-592 2-65 (71)
196 PRK10046 dpiA two-component re 22.6 2.3E+02 0.0051 27.9 6.5 53 544-603 166-220 (225)
197 PF04297 UPF0122: Putative hel 22.3 1.6E+02 0.0035 26.8 4.7 38 540-586 20-57 (101)
198 PRK06266 transcription initiat 22.2 2.2E+02 0.0047 28.3 6.1 39 544-590 26-64 (178)
199 COG4565 CitB Response regulato 22.1 2.5E+02 0.0055 29.1 6.6 56 543-605 161-218 (224)
200 TIGR03821 AblA_like_1 lysine-2 22.0 4E+02 0.0087 28.7 8.6 68 245-313 204-278 (321)
201 PLN02657 3,8-divinyl protochlo 21.9 8.6E+02 0.019 26.6 11.3 92 191-287 61-182 (390)
202 PF04079 DUF387: Putative tran 21.8 2E+02 0.0043 28.1 5.6 46 544-597 2-51 (159)
203 cd00090 HTH_ARSR Arsenical Res 21.8 2.3E+02 0.005 21.9 5.2 40 542-590 9-48 (78)
204 PF07638 Sigma70_ECF: ECF sigm 21.7 1.9E+02 0.004 28.3 5.5 40 538-586 136-175 (185)
205 PRK08374 homoserine dehydrogen 21.7 7.7E+02 0.017 26.7 10.7 63 279-343 115-203 (336)
206 PF00091 Tubulin: Tubulin/FtsZ 21.6 4.3E+02 0.0093 26.4 8.2 39 219-261 55-98 (216)
207 TIGR01081 mpl UDP-N-acetylmura 21.5 5.3E+02 0.011 28.7 9.7 30 193-226 2-31 (448)
208 PTZ00271 hypoxanthine-guanine 21.1 2.8E+02 0.006 28.3 6.7 100 165-275 34-145 (211)
209 PRK09834 DNA-binding transcrip 21.0 2.2E+02 0.0048 29.4 6.2 45 543-596 14-58 (263)
210 PRK06474 hypothetical protein; 21.0 2E+02 0.0043 28.4 5.5 43 542-590 13-55 (178)
211 cd06213 oxygenase_e_transfer_s 20.9 5.3E+02 0.012 25.4 8.7 41 191-232 101-143 (227)
212 PF05461 ApoL: Apolipoprotein 20.9 43 0.00093 36.2 0.9 21 156-176 69-89 (313)
213 cd06170 LuxR_C_like C-terminal 20.8 2.6E+02 0.0055 20.8 5.1 26 560-587 15-40 (57)
214 COG1712 Predicted dinucleotide 20.7 9.5E+02 0.021 25.4 10.3 168 192-384 2-201 (255)
215 PRK00215 LexA repressor; Valid 20.6 2.6E+02 0.0057 27.6 6.4 48 541-590 5-52 (205)
216 PRK02399 hypothetical protein; 20.5 1E+03 0.022 27.0 11.3 132 246-402 186-335 (406)
217 PRK05447 1-deoxy-D-xylulose 5- 20.5 2.5E+02 0.0053 31.4 6.6 50 191-242 2-52 (385)
218 PF02670 DXP_reductoisom: 1-de 20.5 2.7E+02 0.0057 26.4 6.0 48 193-242 1-49 (129)
219 PRK15090 DNA-binding transcrip 20.4 1.4E+02 0.0031 30.6 4.6 43 544-596 18-60 (257)
220 PRK14457 ribosomal RNA large s 20.4 1.1E+03 0.025 25.7 11.7 77 188-264 147-229 (345)
221 PF02186 TFIIE_beta: TFIIE bet 20.3 2E+02 0.0042 24.1 4.5 45 544-598 9-53 (65)
222 PF02629 CoA_binding: CoA bind 20.1 4.7E+02 0.01 22.6 7.2 20 191-212 4-23 (96)
No 1
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=3.4e-151 Score=1244.12 Aligned_cols=528 Identities=66% Similarity=1.090 Sum_probs=505.1
Q ss_pred cCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcccccccccccCCCCCCc
Q 007074 75 KDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPN 154 (619)
Q Consensus 75 ~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~l~~~~~~a~~~~~~l~~G~~~N~~E~R~v~H~wLr~p~~~~~ 154 (619)
||+..+||||++|+|+|+..||+||||||++++++++.|++++++++++|++|++|+++|+||+|+|+|||||.|..+|.
T Consensus 1 ~~~~~~~~r~~~~~~~~~~~g~~lD~sr~~~~~~~l~~l~~~a~~a~~~~~~l~~G~~~N~tE~R~v~H~~LR~p~~~~~ 80 (528)
T PRK14096 1 MDALQLWQRYCDWLYYHPELGLWLDISRMNFDDAFLESLEPKFQKAFAAMAALEAGAIANPDEGRMVGHYWLRNPELAPT 80 (528)
T ss_pred CCHHHHHHHHHhheeecCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCchhhhHhhcCCccCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHH
Q 007074 155 SFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDH 234 (619)
Q Consensus 155 ~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~ 234 (619)
.++.+++++++++|++|+++||+|+|+|++| ++|++||+||||||+|||+|+++||.+...++++||+||+||+.+.+
T Consensus 81 ~~~~~~i~~~l~~i~~fa~~i~~G~~~~~~g--~~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~ 158 (528)
T PRK14096 81 PEIRAEITETLAQIEAFAAKVHSGTIKPPNG--EKFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDR 158 (528)
T ss_pred cchhHHHHHHHHHHHHHHHHHHcCCccCCCC--CCCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHH
Confidence 8899999999999999999999999999999 99999999999999999999999998765557899999999999999
Q ss_pred HHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCc
Q 007074 235 QIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGR 314 (619)
Q Consensus 235 ~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGR 314 (619)
+++.|++++++||||||||||+|+||+++|+.+++||++.|.++++|+||||+++++|+++|+++||.++|+||||||||
T Consensus 159 ~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~~~~l~~~G~~~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~VGGR 238 (528)
T PRK14096 159 VLAELGDRLATTLVVVISKSGGTPETRNGMLEAKAAYEAAGLDFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGR 238 (528)
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccceEEEEECCCcHHhhhccccCceeEeeCCCCCCCc
Confidence 99999744579999999999999999999999999998878778899999999999999999999987899999999999
Q ss_pred chhhhHhhHHHHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHH
Q 007074 315 TSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQ 394 (619)
Q Consensus 315 fSvlSaVGLlPaal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQ 394 (619)
||+||+|||||++++|+||++||+||++||+||+++++.+|||++||++++|+.+++|+++++++||+++|+.|++||||
T Consensus 239 fSv~SaVGLlP~al~G~di~~lL~GA~~md~~~~~~~~~~N~~~llal~~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQ 318 (528)
T PRK14096 239 TSETSAVGLLPAALQGIDIRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKDMVVLPYKDRLLLFSRYLQQ 318 (528)
T ss_pred ccccchhhHHHHHHhCcCHHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCCCCccccCCCCChHHHHHHhhc
Q 007074 395 LVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQ 474 (619)
Q Consensus 395 L~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~~~~l~~g~t~~d~L~~~~~ 474 (619)
|+||||||++++||++|++|++|||++||||||||+||||||++++|+|||.+.++++ ..++.+.+|.+.+|+|.++++
T Consensus 319 L~mES~GK~~~~~G~~v~~G~~v~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~-~~~~~~~~g~~~~~~l~~~~~ 397 (528)
T PRK14096 319 LVMESLGKELDLDGNVVHQGIAVYGNKGSTDQHAYVQQLRDGVDNFFVTFIEVLEDRQ-GSSIEVEPGVTSGDYLSGFLQ 397 (528)
T ss_pred HhhhccCCccccCCcCccccCeEecCCCCCchHHHHHHHHccCCCeeEEEEeEcCCCC-ccchhhccCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987542 234556678899999999999
Q ss_pred cchhhcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007074 475 GTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASC 554 (619)
Q Consensus 475 gt~~al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~~~~~~~~l~~~~~ 554 (619)
||.++++++||||++|+++++||++||+|||||||+|+++|+|||||||||||||+||++|++||++|++|.++|++..
T Consensus 398 gt~~al~~g~rPs~~I~l~~l~p~~lGaLialyE~~v~~~g~l~~IN~FDQpGVE~GK~~a~~il~~~~~~~~~~~~~~- 476 (528)
T PRK14096 398 GTRQALYENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAYHQPGVEAGKKAAAAILDLQKKVEELLKEDG- 476 (528)
T ss_pred CcHhhhhcCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996644
Q ss_pred CCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEeecCCCCCcceeEEcc
Q 007074 555 KEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVYLG 610 (619)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (619)
.++|+++||+++|+|+++|+||+|||||++|+|||+++|+|++|.+++++++
T Consensus 477 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 528 (528)
T PRK14096 477 ----GELSIEEIAAALGAPEQVETIYKILRHLAANNRGVVLEGDWSNPASLRISKG 528 (528)
T ss_pred ----CCCCHHHHHHHcCCCccHHHHHHHHHHHhcCCCceEeeCCCCCchheeeecC
Confidence 7999999999999999999999999999999999999999999999999864
No 2
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-127 Score=1005.98 Aligned_cols=477 Identities=38% Similarity=0.541 Sum_probs=434.1
Q ss_pred hHHHHhhcCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHH--hHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 007074 68 KAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEE--MEPRFQAAFKAMEELEKGAIANPDEGRMVGHYW 145 (619)
Q Consensus 68 ~l~~~f~~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~--l~~~~~~a~~~~~~l~~G~~~N~~E~R~v~H~w 145 (619)
.+|++|++|+.+.|+++.+|.++ ++.+|++||||++++++.++. ++++++.+.++|++||+|++||+||+|+|+|+|
T Consensus 25 ~lk~lf~kD~~r~~k~~~~~~~~-~~~~il~D~Skn~~tdE~v~~l~~laK~~~v~~~~d~mf~Ge~iN~tE~RaVlHva 103 (546)
T KOG2446|consen 25 DLKDLFEKDPDRFEKFSLTFFTQ-KDGGILLDYSKNRITDEIVDLLLMLAKFRAVEEARDAMFKGEHINFTENRAVLHVA 103 (546)
T ss_pred hHHHHHhhCHHHHHhhhhhhccC-CCCcEEEEeccccccHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCCCceeeeHH
Confidence 47999999999999998887554 677899999999999999999 567889999999999999999999999999999
Q ss_pred ccCCCCC----CchhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCC-Cce
Q 007074 146 LRKPELA----PNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNP-PLK 220 (619)
Q Consensus 146 Lr~p~~~----~~~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~-~~~ 220 (619)
||++... +..++.++|..+|+.|++|+++|++|.|+|+|| ++|++||.||||||+|||.||.+||+++.+ +++
T Consensus 104 LRn~~~~pi~~dg~~v~peV~~vL~~ikeFsd~i~SG~w~g~tg--k~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~ 181 (546)
T KOG2446|consen 104 LRNRANRPILVDGKDVMPEVENVLDHIKEFSDDIRSGSWKGYTG--KKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLE 181 (546)
T ss_pred hhCcccCceecCCcccchhHHHHHHHHHHHHHHhhcCCCCCCCC--CeeeeEEEecccccccchHHHHHhhccCCCCCce
Confidence 9998654 345788999999999999999999999999999 999999999999999999999999999976 499
Q ss_pred EEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccc---cCCEEEEEecCCchhhhhHH
Q 007074 221 IRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLE---FAKQGVAITQENSLLDNTVR 297 (619)
Q Consensus 221 i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~---~~~h~VaVT~~~s~L~~~A~ 297 (619)
+||++|+||..+.+++++|+|| +|||||+||||||.||+.|++.+++|++.++.+ +++|+||+++|.. +. .
T Consensus 182 ~~FvsNiD~t~ia~~~~kl~pE--ttLfiVaSKTftT~ETitnaetak~w~~a~~~d~s~VAkhfvAlstN~~---~v-~ 255 (546)
T KOG2446|consen 182 VHFVSNIDGTHIAEVLKKLNPE--TTLFIVASKTFTTAETITNAETAKEWFLAKAKDPSAVAKHFVALSTNTA---EV-E 255 (546)
T ss_pred EEEEecCCchhHHHHHhccCcc--ceEEEEEecCcCcHHHHhhHHHHHHHHHhhcCChHHHHHHHHHHhccHH---HH-H
Confidence 9999999999999999999996 999999999999999999999999999887544 5799999999632 22 2
Q ss_pred HhCCc--ceeeccCCCCCcchhhhHhhHHHHHhc-CCC-HHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCC
Q 007074 298 IEGWL--ARFPMFDWVGGRTSEMSAVGLLPAALQ-GID-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGS 373 (619)
Q Consensus 298 ~~g~~--~~F~~pd~VGGRfSvlSaVGLlPaal~-GiD-i~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~ 373 (619)
+.|+. ++|+||||||||||+||||| +|+||. |+| |++||.||+.||+||+++|+++|+|+++|++++||.++.|.
T Consensus 256 ~fgid~~nmF~fwDWVGGRySlwSAvG-LsiaL~iGf~Nfe~~L~GA~~mDehf~tTp~ekN~p~llal~~vwysn~~G~ 334 (546)
T KOG2446|consen 256 KFGIDPKNMFEFWDWVGGRYSLWSAVG-LSIALYIGFDNFEKLLKGAHAMDEHFRTTPLEKNIPVLLALLSVWYSNFFGA 334 (546)
T ss_pred HhCCCcccccchhhhccCeeehhhhcC-cceeeehhHHHHHHHhhhhHHHHHHhhcCCcccCHHHHHHHHHHHHhccCCC
Confidence 33543 78999999999999999999 588885 887 99999999999999999999999999999999999999999
Q ss_pred ceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCC
Q 007074 374 KDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDR 451 (619)
Q Consensus 374 ~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~ 451 (619)
++++++||++.|++|++|+||+.||||||.++++|++|+ ||+++||++|||+||||+||||||++++|+|||.+.+++
T Consensus 335 ~t~~vlPYdqyl~rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivwGepGTn~QHaf~QlihqGtr~ip~dFi~p~ks~ 414 (546)
T KOG2446|consen 335 ETHAVLPYDQYLHRFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVWGEPGTNGQHAFYQLIHQGTRLIPADFIEPLKSH 414 (546)
T ss_pred CceEEeehHHHHHHHHHHHHHhhhhhcCceeecCCccccccccceeecCCCCCchhHHHHHHhhccccccHHHhhhhhcc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCCCcc-----ccCC-CCChHHHHHHh------hccchh----hcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHH
Q 007074 452 PPGHDW-----ELEP-GVTCGDYLFGM------LQGTRS----ALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYA 515 (619)
Q Consensus 452 ~~~~~~-----~l~~-g~t~~d~L~~~------~~gt~~----al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g 515 (619)
+|.++. ++++ .....+++.+. .+|+.. +.+.||||+++|++++++|++||+|||+|||+++++|
T Consensus 415 ~Pi~~~~hh~~llsNf~aq~ealm~Gkt~~~~~~Eg~~~l~phk~f~gnRpt~Si~~~kvTP~tlGAlIA~YEh~ifv~g 494 (546)
T KOG2446|consen 415 NPIHDGLHHKMLLSNFLAQTEALMVGKTPEEAKKEGTASLLPHKVFSGNRPTISIVLQKVTPFTLGALIALYEHKIFVQG 494 (546)
T ss_pred CCcccchhHHHHHhhhhcchHHHHcCCCHHHHHhcccccccchhhhcCCCCceeEEeeccChHHHHHHHHHHHHHHhhhe
Confidence 775443 5553 22334444433 567765 8999999999999999999999999999999999999
Q ss_pred HhhCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007074 516 SLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASC 554 (619)
Q Consensus 516 ~L~gINpFDQPGVE~gK~~a~~il~~~~~~~~~l~~~~~ 554 (619)
.+||||+|||||||+||++|++|++.+.....+++...|
T Consensus 495 ~iw~INSfdQwGVElGKklAk~V~~~l~~~~~v~~~d~s 533 (546)
T KOG2446|consen 495 IIWNINSFDQWGVELGKKLAKEVLAELDSSGTVLTHDAS 533 (546)
T ss_pred eEeccccccchhhHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999999998888877554
No 3
>PLN02649 glucose-6-phosphate isomerase
Probab=100.00 E-value=4.7e-121 Score=1013.12 Aligned_cols=457 Identities=43% Similarity=0.629 Sum_probs=409.6
Q ss_pred hhHHHHhhcCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHHhHHHHHHH--HHHHHHHHhcCCCCCCcccccccc
Q 007074 67 KKAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHY 144 (619)
Q Consensus 67 ~~l~~~f~~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~l~~~~~~a--~~~~~~l~~G~~~N~~E~R~v~H~ 144 (619)
.+|+++| .|+. |++++ +.+..||++|||||++|+++++.|.+.++++ .++|++|++|+++|.||+|+|+|+
T Consensus 27 ~~l~~lf-~~~~----R~~~~--~~~~~~l~~D~sk~~v~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~ 99 (560)
T PLN02649 27 THLRELL-NDAE----RCQSM--IAEFDGIYLDYSRQRVTDETMELLFPLAEAANLFEKIEAMFSGEIINSTEDRAVLHV 99 (560)
T ss_pred CCHHHHh-cCcc----chhhc--eeeeCCEEEEccCCcCCHHHHHHHHHHHHhCChHHHHHHHhCCCCCCCCCCcchhhH
Confidence 4599999 8888 89887 4457899999999999999999999999887 899999999999999999999999
Q ss_pred cccCCCCCC----chhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCC--
Q 007074 145 WLRKPELAP----NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPP-- 218 (619)
Q Consensus 145 wLr~p~~~~----~~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~-- 218 (619)
|||.|...+ ..++.++|++++++|++|+++||+|+|+|++| ++|++||+||||||+|||+|+++||.++..+
T Consensus 100 aLR~~~~~~~~~~g~~~~~~v~~~l~r~~~f~~~vr~g~~~g~tg--~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~ 177 (560)
T PLN02649 100 ALRAPRLAPILVDGKNVVPEVWEVLDKIKAFSEDVRSGKWKGATG--KRFTNVVSIGIGGSFLGPLFVHEALATDPEALK 177 (560)
T ss_pred HhhCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCcccCCC--CccceEEEEecCcchHHHHHHHHHHhhhccccc
Confidence 999998764 23677899999999999999999999999999 9999999999999999999999999876432
Q ss_pred ----ceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-c-cccCCEEEEEecCCchh
Q 007074 219 ----LKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREA-G-LEFAKQGVAITQENSLL 292 (619)
Q Consensus 219 ----~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~-g-~~~~~h~VaVT~~~s~L 292 (619)
+++||++|+||+.+.++++.++|+ +||||||||||+|.||+.|++.+++||+++ | .+..+|+||||. ++.|
T Consensus 178 ~~~~~~~~fv~NvDp~~~~~~l~~l~p~--~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~-~~~l 254 (560)
T PLN02649 178 SAKGRKLRFLANVDPVDIARQIAQLDPE--TTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMVAVST-NLLL 254 (560)
T ss_pred cccCCcEEEEeCCCHHHHHHHHhhCCcc--cEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEEEECC-ChHH
Confidence 389999999999999999999884 999999999999999999999999999765 3 235799999995 6678
Q ss_pred hhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhc-CCC-HHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcC
Q 007074 293 DNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ-GID-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDG 370 (619)
Q Consensus 293 ~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~-GiD-i~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~ 370 (619)
.+.+..+++ ++|+||||||||||+||+|||||++++ |+| |++||+||++||+||+++++++|||++||++.+|+.++
T Consensus 255 ~~~a~~~~~-~~F~~~d~VGGRfSv~SavGLlP~ala~G~d~~~~lL~GA~~md~hf~~~~~~~N~p~llAll~~~~~~~ 333 (560)
T PLN02649 255 VNKFGIDPW-NAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEFLEGAASMDEHFRTAPLKENIPVLLGLLSVWNSSF 333 (560)
T ss_pred HHHhCcCCc-cEEeCCCCCCCceeecchhhHHHHHHHhCHHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHhc
Confidence 899888887 899999999999999999999999998 999 99999999999999999999999999999999999989
Q ss_pred CCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeec
Q 007074 371 VGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVL 448 (619)
Q Consensus 371 ~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~ 448 (619)
+|+++++++||+++|++|++|||||+||||||++++||++|. +|++|||+.||+|||||+|||||| +++|+|||.+.
T Consensus 334 ~g~~~~vilpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~tG~~~~g~~Gt~dQHSf~QllhqG-~~~~~~FI~~~ 412 (560)
T PLN02649 334 LGYPARAILPYSQALLKFAPHIQQLDMESNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLIHQG-RNIPCDFIGVV 412 (560)
T ss_pred CCCCeEEEeccchhHHHHHHHHHHHHHHhcCCccccCCCCcccCccceEecCCCCCchHHHHHHHHcC-CCeeeEEEEEC
Confidence 999999999999999999999999999999999999999875 999999999999999999999999 99999999987
Q ss_pred cCCCCCCccccC--CCCChHHHHHHhhc------------------cchh-----hcccCCcceeEEEeccCChhhHHHH
Q 007074 449 RDRPPGHDWELE--PGVTCGDYLFGMLQ------------------GTRS-----ALYANDRESVTVTVQEVTPRSVGAL 503 (619)
Q Consensus 449 ~~~~~~~~~~l~--~g~t~~d~L~~~~~------------------gt~~-----al~~ggrPs~tI~l~~l~~~~LGaL 503 (619)
++.. +..++ .+.+.++.|.+.+. ++.. ..++|||||++|+++++||++||+|
T Consensus 413 ~~~~---~~~i~~~~~~~~~~~L~an~~aq~~aL~~Gk~~~~~~~~~~~~~l~~~~~~~gnrPs~~i~l~~l~p~~lG~L 489 (560)
T PLN02649 413 RSQQ---PVHLWLGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPEELIPHKVFAGNRPSLSILLPELTAYTVGQL 489 (560)
T ss_pred CcCC---ccccccccccchHHHHHHHHHhhHHHHHcCCCHHHHHhhcchhhhhhcccCCCCCceEEEEeCCCCHHHHHHH
Confidence 6421 21111 12233444433222 2222 2378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHH
Q 007074 504 VALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540 (619)
Q Consensus 504 ialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~ 540 (619)
||||||+|+++|+|||||||||||||+||++|++|++
T Consensus 490 ialyEh~v~v~G~lw~IN~FDQpGVElGK~la~~i~~ 526 (560)
T PLN02649 490 LALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRA 526 (560)
T ss_pred HHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876654
No 4
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.7e-120 Score=1006.17 Aligned_cols=457 Identities=33% Similarity=0.478 Sum_probs=406.9
Q ss_pred hhHHHHhhcCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHHhHHHHHHH--HHHHHHHHhcCCCCCCcccccccc
Q 007074 67 KKAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHY 144 (619)
Q Consensus 67 ~~l~~~f~~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~l~~~~~~a--~~~~~~l~~G~~~N~~E~R~v~H~ 144 (619)
.+|+++|+ |+. |++++ +.+..||+||||||++++++++.|.+.++++ .++|++|++|+++|.||+|+|+|+
T Consensus 22 ~~l~~~f~-~~~----R~~~~--~~~~~~l~lD~sk~~v~~~~~~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~ 94 (552)
T PTZ00430 22 VHLRDLLK-DEE----RNKSL--IKEFKGVTLDLSRQRLDEETLKLLIELAEEAKLKEKIKDMFNGEKINTTENRAVLHT 94 (552)
T ss_pred CCHHHHhc-Ccc----hHHhh--eeeeCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHHCCCcCCCCCCcccccH
Confidence 46999996 887 89987 4457899999999999999999999999874 599999999999999999999999
Q ss_pred cccCCCCCC----chhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCC---
Q 007074 145 WLRKPELAP----NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNP--- 217 (619)
Q Consensus 145 wLr~p~~~~----~~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~--- 217 (619)
|||.|...+ ..++.+++++++++|++|+++||+|+|+|+|| ++|++||+||||||+|||+|+++||.++..
T Consensus 95 alR~~~~~~~~~~g~~~~~~v~~~l~~~~~f~~~v~~g~~~g~tg--~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~ 172 (552)
T PTZ00430 95 ALRAPRGEKVVVDGKNVLEDVHEVLDRIKKFSDKIRSGEILGSTG--KKLKNVICIGIGGSYLGTEFVYEALRTYGEARE 172 (552)
T ss_pred hhcCCcCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCccCCCC--CeeceEEEEcCCccchHHHHHHHHHhhcccccc
Confidence 999998765 34677899999999999999999999999999 999999999999999999999999987532
Q ss_pred ---CceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhc-c--ccCCEEEEEecCCch
Q 007074 218 ---PLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAG-L--EFAKQGVAITQENSL 291 (619)
Q Consensus 218 ---~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g-~--~~~~h~VaVT~~~s~ 291 (619)
++++||++|+||+.+.++++.++| ++|||||+||||||.||+.|++.+++||.+.+ . ...+|+||||++.
T Consensus 173 ~~~~~~~~Fv~NvDp~~~~~~l~~ldp--~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~-- 248 (552)
T PTZ00430 173 ASKGRKLRFLANVDPIDVRRATEGLDP--EETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNL-- 248 (552)
T ss_pred cccCCcEEEEeCCCHHHHHHHHhhCCc--ccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCch--
Confidence 268999999999999999999988 49999999999999999999999999997653 2 3568999999953
Q ss_pred hhhhHHHhCCc--ceeeccCCCCCcchhhhHhhHHHHHhc-CCC-HHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHH
Q 007074 292 LDNTVRIEGWL--ARFPMFDWVGGRTSEMSAVGLLPAALQ-GID-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWA 367 (619)
Q Consensus 292 L~~~A~~~g~~--~~F~~pd~VGGRfSvlSaVGLlPaal~-GiD-i~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~ 367 (619)
+.|++.|+. ++|+||||||||||+||+|||||++++ |+| |++||+||++||+||+++++++|||++||++++|+
T Consensus 249 --~~a~~~gi~~~~~f~~~d~VGGRySv~SaVGLlP~al~~G~d~~~~lL~GA~~md~hf~~~~~~~N~pvllall~~~~ 326 (552)
T PTZ00430 249 --KLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDMDEHFRTAPLEENLPVLLGLTSFYN 326 (552)
T ss_pred --HHHHHcCCchhcEecCcCCcCCcceeeccchhHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHH
Confidence 366777873 489999999999999999999999995 999 99999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEE
Q 007074 368 SDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFI 445 (619)
Q Consensus 368 ~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI 445 (619)
.+++|+++++++||+++|++|++|||||+||||||++++||++|+ +|++|||+.||+|||||+|||||| ++++++||
T Consensus 327 ~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~v~~~G~~v~~~tG~~~~G~~Gt~dQHSf~QllhqG-~~~~~~FI 405 (552)
T PTZ00430 327 STFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLDYNTGEIYFGEPGTNGQHSFYQLLHQG-RVVPSEFI 405 (552)
T ss_pred HhcCCCCeEEEEecHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCccceeeCCCCCCcchhHHHHHHcC-CCcceEEE
Confidence 889999999999999999999999999999999999999999985 899999999999999999999999 99999999
Q ss_pred eeccCCCC---------CCcccc----------CCCCChHHHHHHhhccc-----hhhcccCCcceeEEEeccCChhhHH
Q 007074 446 EVLRDRPP---------GHDWEL----------EPGVTCGDYLFGMLQGT-----RSALYANDRESVTVTVQEVTPRSVG 501 (619)
Q Consensus 446 ~v~~~~~~---------~~~~~l----------~~g~t~~d~L~~~~~gt-----~~al~~ggrPs~tI~l~~l~~~~LG 501 (619)
.+.++..+ +|+.++ ..|++.++.+. .|+ .++.++|||||++|+++++||++||
T Consensus 406 ~~~~~~~~~~i~~~~~~~~~~llan~laq~~aL~~Gk~~~~~~~---~~~~~~l~~~~~~~gnrPs~~I~l~~l~p~~lG 482 (552)
T PTZ00430 406 GFAKSQNPIKLLGEPVSNHDELMSNFFAQPDALAFGKTYEELEK---EGVPEELIPHKVFPGNRPSLLLLFPELNPYTIG 482 (552)
T ss_pred EEeccCCCcCcCccccccHHHHHhhhHHHHHHHHcCCCHHHHHh---ccchhhhhhcccCCCCCceEEEEeCCCCHHHHH
Confidence 99763211 112111 12444444333 232 2456789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHHH
Q 007074 502 ALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQ 542 (619)
Q Consensus 502 aLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~~ 542 (619)
+|||+|||+|+++|+|||||||||||||+||++|++|+...
T Consensus 483 ~LialyEh~v~v~G~lwgINpFDQpGVElGK~la~~i~~~~ 523 (552)
T PTZ00430 483 QLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLF 523 (552)
T ss_pred HHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877643
No 5
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=3.4e-120 Score=999.35 Aligned_cols=457 Identities=31% Similarity=0.457 Sum_probs=411.4
Q ss_pred hHHHHhhcCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHHhHHHHHH--HHHHHHHHHhcCCCC-----CCcccc
Q 007074 68 KAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQA--AFKAMEELEKGAIAN-----PDEGRM 140 (619)
Q Consensus 68 ~l~~~f~~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~l~~~~~~--a~~~~~~l~~G~~~N-----~~E~R~ 140 (619)
+|+++| |+. |+.++ +.+..||++|||||++++++++.|.+..++ +.++|++|++|+++| .||+|+
T Consensus 27 ~l~~~~--~~~----R~~~~--~~~~~~l~~d~sk~~~~~~~~~~l~~la~~~~l~~~~~~m~~G~~iN~~~~~~tE~R~ 98 (533)
T PRK14095 27 TLPGVL--SEE----RIKKY--SLSGEGFTYNYATERVDDRILAALQNLADEAELIEKMKAMQNGAVINRIEGFPSENRP 98 (533)
T ss_pred Chhhhc--Cch----hHHhc--eeecCCEEEEccCCcCCHHHHHHHHHHHHHCCcHHHHHHHhCcccccCCCCCCCCCcc
Confidence 567766 666 89987 455789999999999999999999998874 678999999999999 999999
Q ss_pred cccccccCCCCCC-----chhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCC
Q 007074 141 VGHYWLRKPELAP-----NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPD 215 (619)
Q Consensus 141 v~H~wLr~p~~~~-----~~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~ 215 (619)
|+|++||.|...+ ..++.++++++++||++|+++||+|+|+|++| ++|++||+||||||+|||+|++++|.++
T Consensus 99 vlH~alR~~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~vr~g~~~g~tg--~~~~~VV~IGIGGS~LGp~av~~AL~~~ 176 (533)
T PRK14095 99 VLHTATRGQVGDSVLTDEAEDMAEFSKRELERLAEFLKKVRSGEIKNSNG--KKFTTVVQIGIGGSDLGPKALYLALKNY 176 (533)
T ss_pred hhhHHhhCcCCCCccccCcchhhHHHHHHHHHHHHHHHHHHcCCccCCCC--CccceEEEEecCcchHhHHHHHHHHHhh
Confidence 9999999987654 23677899999999999999999999999999 9999999999999999999999999876
Q ss_pred C-CCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhh
Q 007074 216 N-PPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDN 294 (619)
Q Consensus 216 ~-~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~ 294 (619)
. ...++||++|+||..+.++++.++| ++|||||+||||+|.||+.|++.+++|+++.|.+.++|+||||+++++|.+
T Consensus 177 ~~~~~~l~fvsNvDp~~~~e~L~~ldp--e~TLfiviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~~~s~l~~ 254 (533)
T PRK14095 177 AKKDKRVHFISNVDPDDAAEVLSEIDL--AKTLFIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTSEGSPMDD 254 (533)
T ss_pred ccCCceEEEECCCCHHHHHHHHhcCCc--ccEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEECCchHHHh
Confidence 3 2368999999999999999999988 499999999999999999999999999987776678999999998887654
Q ss_pred hHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhc-CCC-HHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCC
Q 007074 295 TVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ-GID-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVG 372 (619)
Q Consensus 295 ~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~-GiD-i~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g 372 (619)
..++.++|+||||||||||+||+|||||++++ |+| |++||+||++||+||+++++++|||+++|++.+|+.+++|
T Consensus 255 ---~~~~~~~f~~~d~VGGRfSv~SavGLlp~ala~G~d~~~~lL~GA~~mD~hf~~~~~~~N~p~l~All~~~~~~~~g 331 (533)
T PRK14095 255 ---ESGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFLKGAAAMDKAALNPNIRENLPLLAALIGIWNRNFLG 331 (533)
T ss_pred ---hcCccccCCCCCCCCCcccccccchHHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHhccCC
Confidence 34666799999999999999999999999986 999 9999999999999999999999999999999999999999
Q ss_pred CceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccC
Q 007074 373 SKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRD 450 (619)
Q Consensus 373 ~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~ 450 (619)
+++++++||+++|++|++|||||+||||||+++++|++|+ +|+++||+.||+|||||+||||||++++|+|||.+.++
T Consensus 332 ~~~~~~lpY~~~L~~f~~~lqQL~mESnGK~v~~~G~~v~~~t~pi~wg~~Gt~~QHSf~QllhqG~~~~~~dFI~~~~~ 411 (533)
T PRK14095 332 YPTTAVIPYSQALERFPAHLQQLDMESNGKSVNRFGEPINFKTGPIIWGEPGTNGQHSFFQLLHQGTDIVPVEFIGFKES 411 (533)
T ss_pred CCeEEEecchHHHHHHHHHHHHHHHHhcCCccccCCCCcccCcccceecCCCCCcHHHHHHHHhcCCCCcceeEEEEcCC
Confidence 9999999999999999999999999999999999999987 88999999999999999999999999999999998764
Q ss_pred CCCCCccccCCCCChHHHHHHhhccchh------------hcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhh
Q 007074 451 RPPGHDWELEPGVTCGDYLFGMLQGTRS------------ALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLV 518 (619)
Q Consensus 451 ~~~~~~~~l~~g~t~~d~L~~~~~gt~~------------al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~ 518 (619)
..+ .+..+ +|.+.++.|.+.+.++.. +.++|||||++|+++++||++||+|||||||+|+++|+||
T Consensus 412 ~~~-~d~~i-~~~~~~~~L~an~~Aq~~al~~G~~~~~~~~~~~gnrPs~~i~l~~l~p~~lG~LialyEh~v~v~G~lw 489 (533)
T PRK14095 412 QLG-QDIVI-QGSTSQQKLFANLIAQIIALACGKENTNPNKNFKGNRPSSLLVAKQLTPYTLGALLAHYENKVMFQGFCW 489 (533)
T ss_pred CCc-ccccC-CCCchHHHHHHHHHHHHHHHhcCCccchhhhhcCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHheeec
Confidence 321 22223 355567777665444333 4567999999999999999999999999999999999999
Q ss_pred CcCCCCCCchHHHHHHHHHHHHH
Q 007074 519 NINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 519 gINpFDQPGVE~gK~~a~~il~~ 541 (619)
|||||||||||+||++|++|++.
T Consensus 490 gIN~FDQ~GVElGK~la~~il~~ 512 (533)
T PRK14095 490 NINSFDQEGVQLGKVLANQILGI 512 (533)
T ss_pred CcCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 6
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.5e-119 Score=999.98 Aligned_cols=461 Identities=35% Similarity=0.492 Sum_probs=414.1
Q ss_pred hhHHHHhhcCchhhHHHHHHHHhhccCcceEEEccCCCCCHHHHHHhHHHHHHH--HHHHHHHHhcCCCCCCcccccccc
Q 007074 67 KKAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHY 144 (619)
Q Consensus 67 ~~l~~~f~~~~~~~~~r~~~~~~~~~~~gl~lD~Sr~~i~~~~l~~l~~~~~~a--~~~~~~l~~G~~~N~~E~R~v~H~ 144 (619)
.+|+++|+.|+. |+.++ +.+..||++|||||++++++++.|.+.++++ .++|++|++|+++|.||+|+|+|+
T Consensus 24 ~~l~~lf~~~~~----R~~~~--~~~~~~~~lD~sk~~i~~~~~~~l~~la~~~~l~~~~~~~~~G~~iN~tE~R~vlH~ 97 (548)
T PRK00179 24 VHLRDLFAADPD----RFERF--SLTAGGLLLDYSKNRITDETLALLLDLAREAGLEGARDAMFAGEKINTTEDRAVLHT 97 (548)
T ss_pred CCHHHHhccCch----HHHhc--eeecCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHhCCCCCCCCCCcchhhH
Confidence 359999999988 89987 4457899999999999999999999998775 799999999999999999999999
Q ss_pred cccCCCCCC----chhhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCC-CCc
Q 007074 145 WLRKPELAP----NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN-PPL 219 (619)
Q Consensus 145 wLr~p~~~~----~~~~~~~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~-~~~ 219 (619)
|||.|...+ ..++.+++++++++|++|+++||+|+|+|++| ++|++||+||||||+|||+|+++||.++. ..+
T Consensus 98 alR~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~i~~g~~~g~~g--~~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~ 175 (548)
T PRK00179 98 ALRNPSNTPILVDGQDVMPEVHAVLARMKAFAEAVRSGEWKGYTG--KAITDVVNIGIGGSDLGPVMVTEALRPYADPGL 175 (548)
T ss_pred HhhCCcCCccccCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCC--CccCeEEEECCCcchHHHHHHHHHhhhhccCCC
Confidence 999998754 34678899999999999999999999999999 99999999999999999999999998753 346
Q ss_pred eEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcc---ccCCEEEEEecCCchhhhhH
Q 007074 220 KIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGL---EFAKQGVAITQENSLLDNTV 296 (619)
Q Consensus 220 ~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~---~~~~h~VaVT~~~s~L~~~A 296 (619)
++||++|+||+.+.++++.++| ++||||||||||+|.||+.|++.+++||.+.+. ...+|+||||++.++ +
T Consensus 176 ~l~fl~nvDp~~~~~~l~~l~~--~~TL~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~~~~----~ 249 (548)
T PRK00179 176 RVHFVSNVDGAHLAETLKKLDP--ETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTNAEA----V 249 (548)
T ss_pred ceEEEeCCCHHHHHHHHhcCCc--ccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEEEcCCcHH----H
Confidence 8999999999999999999987 599999999999999999999999999976642 357899999997543 3
Q ss_pred HHhCCc--ceeeccCCCCCcchhhhHhhHHHHHhcCCC-HHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCC
Q 007074 297 RIEGWL--ARFPMFDWVGGRTSEMSAVGLLPAALQGID-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGS 373 (619)
Q Consensus 297 ~~~g~~--~~F~~pd~VGGRfSvlSaVGLlPaal~GiD-i~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~ 373 (619)
++.|+. ++|+||||||||||+||+|||+|++++|+| |++||+||++||+||+++++.+|||++||++++|+.+++|+
T Consensus 250 ~~~g~~~~~~F~~~d~VGGRfSvlSavGL~pa~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llall~~~~~~~~g~ 329 (548)
T PRK00179 250 AEFGIDPDNMFGFWDWVGGRYSLWSAIGLSIALAIGPDNFEELLAGAHAMDEHFRTAPLEKNLPVLLALIGVWYRNFFGA 329 (548)
T ss_pred HHcCCchhcEEECCCCCCCcceecchhhHHHHHHhCcHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHhcCCC
Confidence 345762 499999999999999999999999999999 89999999999999999999999999999999999989999
Q ss_pred ceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCC
Q 007074 374 KDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDR 451 (619)
Q Consensus 374 ~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~ 451 (619)
++++++||+++|+.|++|||||+|||+||+++++|++|+ +|+++||+.||+|||||+||||||++++|+|||.+.+..
T Consensus 330 ~~~vllpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~t~piv~g~~Gt~dQHSf~QllhqG~~~~~~~FI~~~~~~ 409 (548)
T PRK00179 330 QSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQTGPIIWGEPGTNGQHAFFQLLHQGTKLVPADFIAPAQPH 409 (548)
T ss_pred CeEEEecchHHHHHHHHHHHHHhhhhcCCccccCCCccccCccceeecCCCCchhHHHHHHHhccCCCeeeEEEEEcCCC
Confidence 999999999999999999999999999999999999986 788899999999999999999999999999999987643
Q ss_pred CC---CCccccC----------CCCChHHHHHHh-----hccch-----hhcccCCcceeEEEeccCChhhHHHHHHHHH
Q 007074 452 PP---GHDWELE----------PGVTCGDYLFGM-----LQGTR-----SALYANDRESVTVTVQEVTPRSVGALVALYE 508 (619)
Q Consensus 452 ~~---~~~~~l~----------~g~t~~d~L~~~-----~~gt~-----~al~~ggrPs~tI~l~~l~~~~LGaLialyE 508 (619)
.+ +|+.+++ .|++.++.++.+ ..++. +++++|||||++|+++++||++||+||||||
T Consensus 410 ~~~~~~~~~l~~n~~aq~~al~~Gk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gnrPs~~i~l~~l~p~~lG~LialyE 489 (548)
T PRK00179 410 NPLGDHHDLLLANCFAQTEALMFGKTAEEVRAELRAKGLDEAEAEELAPHKVFPGNRPSTTILLDRLTPFTLGALIALYE 489 (548)
T ss_pred CccchhhHhhcCCccccHHHHhcCCCHHHHHHHHhhcccchhHHHHhhhcccCCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 21 2333333 477777777654 22443 3467899999999999999999999999999
Q ss_pred HHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHH
Q 007074 509 RAVGIYASLVNINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 509 ~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~ 541 (619)
|+|+++|+|||||||||||||+||++|++|++.
T Consensus 490 h~~~v~g~l~gIN~FDQpGVElGK~la~~il~~ 522 (548)
T PRK00179 490 HKVFVQGVIWGINSFDQWGVELGKQLAKRILPE 522 (548)
T ss_pred HHHHHhhhccCcCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887653
No 7
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=100.00 E-value=5.7e-112 Score=932.62 Aligned_cols=436 Identities=37% Similarity=0.514 Sum_probs=374.1
Q ss_pred EccCCCCCHHHHHHhHHHHHH--HHHHHHHHHhcCCCCCCcccccccccccCCCCC----CchhhhHHHHHHHHHHHHHH
Q 007074 99 DVSRVGFTDEFVEEMEPRFQA--AFKAMEELEKGAIANPDEGRMVGHYWLRKPELA----PNSFLKSQIETTLDAVRKFA 172 (619)
Q Consensus 99 D~Sr~~i~~~~l~~l~~~~~~--a~~~~~~l~~G~~~N~~E~R~v~H~wLr~p~~~----~~~~~~~~i~~~l~~I~~fa 172 (619)
|||||++|+++++.|.+.+++ ..+++++|++|+++|.+|+|+|+|+|||.|... +..+....++..+++|++|+
T Consensus 1 d~sk~~~~~~~~~~l~~la~~~~l~~~~~~~~~g~~iN~tE~r~vlH~alr~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ 80 (486)
T PF00342_consen 1 DYSKQRIDEETLDLLIELAEEAGLPEKIEAMFSGEKINITENRAVLHTALRAPSGQSLLVDGKDVLGWVDAPLQRMKEFA 80 (486)
T ss_dssp EETTSS--HHHHHHHHHHHHHTTHHHHHHHHHTTHHHBTTTTB--HHHHHTCTTTT-HEETTEESHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcChHHHHHHHhCcchhhccccHhHHHHHHHcCCCCCccCCCchhHHHHhhHHHHHHHHH
Confidence 999999999999999998866 568889999999999999999999999999763 23467788999999999999
Q ss_pred HHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCC-ceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEE
Q 007074 173 DEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPP-LKIRFIDNTDPAGIDHQIAQLGPELASTLVVVI 251 (619)
Q Consensus 173 ~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~-~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIVi 251 (619)
++|++|.+++.+| ++|++||+||||||+|||+|+++||.++..+ +++||++|+||+.+.++++.|+| ++|+||||
T Consensus 81 ~~i~~~~~~~~~~--~~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~--~~Tl~iVi 156 (486)
T PF00342_consen 81 ERIRSGAWKGRTG--KPITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDP--ETTLFIVI 156 (486)
T ss_dssp HHHHTTHSBHTTS--SB-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTG--GGEEEEEE
T ss_pred HHHHHHHHccccC--CceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCC--ccEEEEEe
Confidence 9999999999999 9999999999999999999999999987654 89999999999999999999998 49999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcc---ccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHh
Q 007074 252 SKSGGTPETRNGLLEVQKAFREAGL---EFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAAL 328 (619)
Q Consensus 252 SKSGtT~ETl~~~~~a~~~l~~~g~---~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal 328 (619)
||||+|.||+.+++.+++||++++. ++++|+||||++++.+.+.....+ ++|+||||||||||+||+|| ||+++
T Consensus 157 SKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~--~~f~~~d~VGGRfSv~SaVG-lp~al 233 (486)
T PF00342_consen 157 SKSGTTIETLANFRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEE--NIFPIPDWVGGRFSVLSAVG-LPLAL 233 (486)
T ss_dssp ESSST-HHHHHHHHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGG--GEEE--TTS-GGGTTTSGGG-HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHh--cceeccccccccccCCCCCc-hHHHH
Confidence 9999999999999999999998754 468999999998777777666554 79999999999999999999 89998
Q ss_pred cC--CCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccC
Q 007074 329 QG--IDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDL 406 (619)
Q Consensus 329 ~G--iDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~ 406 (619)
+| .||++||+||++||+||+++++++|+|++||++++|+.+++|++.++++||+++|+.|++||||||||||||++++
T Consensus 234 a~G~~~~~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK~~~~ 313 (486)
T PF00342_consen 234 AGGFIDFEELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGKSVDR 313 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSESBTT
T ss_pred HcChhhHHHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccchhhcc
Confidence 75 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCC---CCcccc----------CCCCChHHHHHH
Q 007074 407 DGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPP---GHDWEL----------EPGVTCGDYLFG 471 (619)
Q Consensus 407 dG~~v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~---~~~~~l----------~~g~t~~d~L~~ 471 (619)
+|++++ +|+++||+.||+|||||+||||||+++++++||.+.++... .++.+. ..|++..+....
T Consensus 314 ~G~~~~~~t~pi~~G~~Gt~dqHS~~Qll~qG~~~~~~~fi~~~~~~~~~~~~~~~l~~n~~~q~~~L~~Gk~~~~~~~~ 393 (486)
T PF00342_consen 314 DGEPVDYGTGPIVWGGVGTNDQHSFFQLLHQGGRDKPVDFILFVKNPHDDLDIHDILLANCLAQLDALAFGKTLEELNKE 393 (486)
T ss_dssp TSSBESSEESEEEEEEETTGGGGTSHHHHHHSSSSCEEEEEEEECCSSSGCHHHHHHHHHHHHHHHHHHHTBBHHHHHHH
T ss_pred cCceeeecCCccccCCCCCccccccceeecccCceEEEEEEEEccccccccccchhhhhhhhHHHHHHHCCCCHHHHHhh
Confidence 998886 89999999999999999999999999999999987653321 111111 126666665555
Q ss_pred hhcc---chh--hcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHH
Q 007074 472 MLQG---TRS--ALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 472 ~~~g---t~~--al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~ 541 (619)
.+.| |.. ..++|||||++|+++++||++||+|||||||+|+++|+|||||||||||||+||++|++|+..
T Consensus 394 ~~~~~~~~l~~~~~~~Gn~Ps~~I~l~~l~~~~lG~Lia~yE~~~~v~g~l~~INpFDQpGVElgK~~a~~il~~ 468 (486)
T PF00342_consen 394 AFAATAETLAAHKVFPGNRPSTTILLDELDPYSLGALIAFYEHKTFVQGYLWGINPFDQPGVELGKKLAKKILGK 468 (486)
T ss_dssp HHHTHHHHHHHGHHBTTT-EEEEEEESESSHHHHHHHHHHHHHHHHHHHHHHTS-TT--GGGHHHHHHHHHHHHH
T ss_pred hccccHHHHHHhhhhcCCcceeeeecccCCchHHHHHHHHHHHHHHHhhhhcCcCCCCCccHHHHHHHHHHHHhh
Confidence 5566 333 345689999999999999999999999999999999999999999999999999999877764
No 8
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-100 Score=830.54 Aligned_cols=419 Identities=39% Similarity=0.517 Sum_probs=380.5
Q ss_pred ceEEEccCCCCCHHHHHHhHHHHHH--HHHHHHHHHhcCCCCCCcccccccccccCCCCCCchhhhHHHHHHHHHHHHHH
Q 007074 95 GLYLDVSRVGFTDEFVEEMEPRFQA--AFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRKFA 172 (619)
Q Consensus 95 gl~lD~Sr~~i~~~~l~~l~~~~~~--a~~~~~~l~~G~~~N~~E~R~v~H~wLr~p~~~~~~~~~~~i~~~l~~I~~fa 172 (619)
+|++||||+++++++++.|.+..++ +..++.+|++|+.+| +|+|+++|+|+|. .++.+.+++|++|+
T Consensus 3 ~l~~d~sk~~~~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~n-~e~r~~lh~~~r~----------~e~~~vl~~~~~f~ 71 (446)
T COG0166 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALRM----------PEVDEVLKRMKAFA 71 (446)
T ss_pred cEEEehhhccCchHHHHHHHHHHHHHhHHHHHHHhhcCCCCC-cccchhhhhhhhh----------HHHHHHHHHHHHHH
Confidence 7999999999999999999987766 678899999999999 9999999999993 35778999999999
Q ss_pred HHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCC-CceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEE
Q 007074 173 DEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNP-PLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVI 251 (619)
Q Consensus 173 ~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~-~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIVi 251 (619)
+++|+| +||+||+||||||+|||+++.++|.++.. .+++||++|+||+++.++++.++| ++|+|+|+
T Consensus 72 ~~~~~g----------~~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~--~~tl~ivi 139 (446)
T COG0166 72 DDVRSG----------KITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDP--ETTLFIVI 139 (446)
T ss_pred hhcccC----------ccceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCc--ccEEEEEE
Confidence 999975 58999999999999999999999999875 479999999999999999999997 49999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccc-cCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcC
Q 007074 252 SKSGGTPETRNGLLEVQKAFREAGLE-FAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQG 330 (619)
Q Consensus 252 SKSGtT~ETl~~~~~a~~~l~~~g~~-~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~G 330 (619)
||||||+||+.|++.+++|+.++ .+ ..+|+|+++++++.+.+.+.++++ ++|.||||||||||+||+||++|+++.|
T Consensus 140 SKSGtT~Et~~n~~~~r~~~~~~-~~~~~~~~v~~~~~~~~l~~~~~~~~~-~~f~ipd~VGGRfS~~SaVG~l~~a~~~ 217 (446)
T COG0166 140 SKSGTTLETLTNFRLARKWLEKK-EEAAKKHFVATSTNGGALAVLAGENGL-ETFEIPDWVGGRYSVLSAVGLLPLALGG 217 (446)
T ss_pred eCCCCcHHHHHHHHHHHHHHHhh-hhhhhcEEEEEcCCchHHHHhcCCCce-eEEECCCCCCCccchhHHHHHHHHHHhc
Confidence 99999999999999999999877 44 357888888888888888888888 9999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCc
Q 007074 331 IDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNR 410 (619)
Q Consensus 331 iDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~ 410 (619)
.||++||+||++||+||+++++++|+|+++|++++|+++++|+++++++||+++|++|++|+|||+|||+||++.++|.+
T Consensus 218 ~~~~~lL~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~~~ 297 (446)
T COG0166 218 IDFKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIGPE 297 (446)
T ss_pred ccHHHHHHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--ccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCCC---CccccCCCCChHHHHHH-hhccchhhcccCC
Q 007074 411 VN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPG---HDWELEPGVTCGDYLFG-MLQGTRSALYAND 484 (619)
Q Consensus 411 v~--~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~---~~~~l~~g~t~~d~L~~-~~~gt~~al~~gg 484 (619)
++ +|+.+||..|+++||+|+|++|||++++|++||.+.+...+. ++.+..+ ..++..+ ++.+|..++..||
T Consensus 298 ~~~~t~~~~~g~~g~~gqh~ffql~~qgt~~~p~~~I~~~~~~~~~~~~~~~L~~~---~~aq~~~~a~~~t~~~~~~gn 374 (446)
T COG0166 298 VNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKPADFIEIEESIEDLDGHHDKLLSN---FLAQTEALAFGKTLLAHTAGN 374 (446)
T ss_pred cccCCCceeeccccccCceeEEEEEEecccccchhhccccccccCccchHHHHHHh---HHHHHHHHHhhhhhhHhhcCC
Confidence 99 999999999999999999999999999999999997643221 1111111 1122222 3455777888899
Q ss_pred cceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHH
Q 007074 485 RESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 485 rPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~ 541 (619)
||+++|+++++||+++|+|+++|||+|+++|+|||||||||||||+||++|.+||..
T Consensus 375 ~P~~~i~~~~l~p~~~G~l~a~yE~~~~~~G~l~~in~FdQ~GVElgK~~~~~ll~~ 431 (446)
T COG0166 375 RPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLGK 431 (446)
T ss_pred CCceEEEecCCChhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998877754
No 9
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=6.5e-99 Score=822.09 Aligned_cols=409 Identities=29% Similarity=0.387 Sum_probs=358.6
Q ss_pred cceEEEccCC--CCCHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcccccccccccCCCCCCchhhhHHHHHHHHHHHHH
Q 007074 94 LGLYLDVSRV--GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRKF 171 (619)
Q Consensus 94 ~gl~lD~Sr~--~i~~~~l~~l~~~~~~a~~~~~~l~~G~~~N~~E~R~v~H~wLr~p~~~~~~~~~~~i~~~l~~I~~f 171 (619)
.+|.+|++++ .+++++++.+++++.++++++.+ +...+ ++ +.| |++.|.... .+.+++|++|
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~--~~-~lG--~~~lp~~~~--------~~~~~~i~~~ 65 (448)
T PRK14097 2 THIKFDYSKALSFVGEHELEYLQPQVKAAHQTLHN---GTGAG--ND-FLG--WLDLPENYD--------KEEFARIKKA 65 (448)
T ss_pred CeEEEehhhhhccCCHHHHHHHHHHHHHHHHHHHh---ccCCC--Cc-ccC--cccChhhcC--------HHHHHHHHHH
Confidence 3789999986 58888899999988887776643 33222 11 456 999997422 2578899999
Q ss_pred HHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCC---------CCceEEEE-eCCChhHHHHHHHhhCc
Q 007074 172 ADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN---------PPLKIRFI-DNTDPAGIDHQIAQLGP 241 (619)
Q Consensus 172 a~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~---------~~~~i~Fv-dN~DP~~i~~~l~~L~~ 241 (619)
+++||+ ++++||+||||||+|||+|+++||.+.. +.+++||+ +|+||..+.++++.+++
T Consensus 66 ~~~~~~-----------~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~ 134 (448)
T PRK14097 66 AEKIKS-----------DSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKD 134 (448)
T ss_pred HHHHhc-----------CCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCC
Confidence 999994 4699999999999999999999997521 13688887 77999999999999987
Q ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-ccc-cCCEEEEEecCC-chhhhhHHHhCCcceeeccCCCCCcchhh
Q 007074 242 ELASTLVVVISKSGGTPETRNGLLEVQKAFREA-GLE-FAKQGVAITQEN-SLLDNTVRIEGWLARFPMFDWVGGRTSEM 318 (619)
Q Consensus 242 ~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~-g~~-~~~h~VaVT~~~-s~L~~~A~~~g~~~~F~~pd~VGGRfSvl 318 (619)
++|+||||||||+|+||+++|+.+++||++. |.+ ..+|+|+||+++ +.|.++|+++|| ++|+||||||||||+|
T Consensus 135 --~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~-~~f~ip~~VGGRfSvl 211 (448)
T PRK14097 135 --KDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGY-ETFVIPDDVGGRFSVL 211 (448)
T ss_pred --CcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCc-CEEeCCCCCCcccccc
Confidence 5999999999999999999999999999654 433 457899999865 479999999999 8999999999999999
Q ss_pred hHhhHHHHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHh
Q 007074 319 SAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVME 398 (619)
Q Consensus 319 SaVGLlPaal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mE 398 (619)
|+|||||++++|+||++||+||++||+||+++++++|||+++|++++|+. .+|++++|++||+++|+.|++||||||||
T Consensus 212 SavGLlP~al~G~di~~lL~GA~~m~~~~~~~~~~~N~a~l~A~~~~~~~-~~g~~~~vl~~Y~~~L~~f~~w~~QL~aE 290 (448)
T PRK14097 212 TAVGLLPIAVAGIDIDALMKGAADARKDYSSSDLSENPAYQYAAVRNILY-RKGYTTEILVNYEPSLQYFSEWWKQLFGE 290 (448)
T ss_pred cHhHHHHHHHhhhhHHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHH-hCCCCeEEEEEChHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998887 78999999999999999999999999999
Q ss_pred hcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCC----CC--C---ccccCCCCChHHHH
Q 007074 399 SLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRP----PG--H---DWELEPGVTCGDYL 469 (619)
Q Consensus 399 SlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~----~~--~---~~~l~~g~t~~d~L 469 (619)
|+||+ | +|++|.++.||+|||||+|++|||++++|+|||.+.+... +. + .+.+..|++.++++
T Consensus 291 SlGK~----g----~G~~P~~~igt~dqHS~~Ql~~~G~~~~~~t~i~~~~~~~~~~i~~~~~~~~~l~~l~g~~~~~l~ 362 (448)
T PRK14097 291 SEGKD----Q----KGIFPASANFSTDLHSLGQYIQEGRRNLFETVIKVEKPRKDLTIPEDEEDLDGLNYLAGKTVDFVN 362 (448)
T ss_pred ccccC----C----CCcccccCccCCCcchhhhHHHhCCCcEEEEEEeecCCCCcCCCCcccccchhhhhhcCCCHHHHH
Confidence 99997 3 5899999999999999999999999999999999875321 00 0 11223578899999
Q ss_pred HHhhccchhhcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHH
Q 007074 470 FGMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 470 ~~~~~gt~~al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~ 541 (619)
++.+.+|..+|.++||||++|+++++||++||+||+||||+|+++|+|||||||||||||+||++++++|..
T Consensus 363 ~~~~~at~~al~~~~~P~~~I~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFDQpGVE~gK~~~~~~l~~ 434 (448)
T PRK14097 363 KKAFEGTLLAHTDGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFDQPGVEAYKKNMFALLGK 434 (448)
T ss_pred HhhhhhhHhhHhhCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998887743
No 10
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5.1e-98 Score=813.05 Aligned_cols=402 Identities=33% Similarity=0.459 Sum_probs=350.0
Q ss_pred ceEEEccCC-------CCCHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcccccccccccCCCCCCchhhhHHHHHHHHH
Q 007074 95 GLYLDVSRV-------GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDA 167 (619)
Q Consensus 95 gl~lD~Sr~-------~i~~~~l~~l~~~~~~a~~~~~~l~~G~~~N~~E~R~v~H~wLr~p~~~~~~~~~~~i~~~l~~ 167 (619)
.+.+|++.. ++++++++.+++++..+++.+.+ +.. ++. .| |+++|.... .+++++
T Consensus 2 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~----~~~-lg--~~~lp~~~~--------~~~~~~ 63 (446)
T PRK00973 2 MLKFDFSNVFEPNIGGGISIEDIESVKEKITSAVENLME---KEP----NGE-LG--FLELPYDRS--------LDSYEE 63 (446)
T ss_pred eeEEehhhccccccccCCCHHHHHHHHHHHHHHHHHHHh---cCC----CCc-CC--cccCccccC--------HHHHHH
Confidence 478898874 47888899999998887776543 221 122 34 999987422 124444
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCC---------CCceEEEEeCCChhHHHHHHHh
Q 007074 168 VRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN---------PPLKIRFIDNTDPAGIDHQIAQ 238 (619)
Q Consensus 168 I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~---------~~~~i~FvdN~DP~~i~~~l~~ 238 (619)
|++ .++ .+++||+||||||+|||++++++|.+.. .++++||++|+||..+.++++.
T Consensus 64 ~~~---~~~------------~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~ 128 (446)
T PRK00973 64 LKE---WSK------------NFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDV 128 (446)
T ss_pred HHH---Hhh------------cCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHh
Confidence 444 333 2789999999999999999999998642 1257999999999999999999
Q ss_pred hCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhHHHhCCcceeeccCCCCCcchh
Q 007074 239 LGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTVRIEGWLARFPMFDWVGGRTSE 317 (619)
Q Consensus 239 L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A~~~g~~~~F~~pd~VGGRfSv 317 (619)
+++ ++|+||||||||+|+||+.+|+.+++||++.|.+.++|+||||++ +|.|+++|+++|| ++|++|+|||||||+
T Consensus 129 l~~--~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~-~~f~ip~~VGGRfSv 205 (446)
T PRK00973 129 IDL--EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGY-RTLEIPENVGGRFSV 205 (446)
T ss_pred CCc--ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCC-cEEeeCCCCCcceee
Confidence 987 599999999999999999999999999955565567899999996 6789999999999 899999999999999
Q ss_pred hhHhhHHHHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHH
Q 007074 318 MSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVM 397 (619)
Q Consensus 318 lSaVGLlPaal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~m 397 (619)
||+|||+|++++|+||++||+||++||+||+++++.+|||+++|++++|+.+ +|++++|++||+++|+.|++|||||||
T Consensus 206 lSaVGL~p~a~~G~di~~lL~GA~~m~~~~~~~~~~~N~a~~~a~~~~~~~~-~g~~~~vl~~Y~~~L~~f~~w~~QL~~ 284 (446)
T PRK00973 206 LTPVGLAPAAALGIDIEELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLKYFGDWYRQLWA 284 (446)
T ss_pred ecHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHh-CCCCeEEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888775 799999999999999999999999999
Q ss_pred hhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCC----C--C---ccccCCCCChHHH
Q 007074 398 ESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPP----G--H---DWELEPGVTCGDY 468 (619)
Q Consensus 398 ESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~----~--~---~~~l~~g~t~~d~ 468 (619)
||+||+ ++|++|+|+.||+|||||+||+|||++++|+|||.+.+.... . + .+.+..|+|.++.
T Consensus 285 ES~GK~--------~~G~~P~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~v~~~~~~~~i~~~~~~~~~l~~l~g~t~~~l 356 (446)
T PRK00973 285 ESLGKK--------GVGQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVEKYRRDVEIPYEYEDIEELSYLGGHKLSEL 356 (446)
T ss_pred HhcCCC--------CCCCceecCCCCccHHHHHHHHHhCCCCeEEEEEEECCCCCccCCCcchhhhhHHhhhcCCCHHHH
Confidence 999997 479999999999999999999999999999999998753210 0 0 1123457899999
Q ss_pred HHHhhccchhhcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHH
Q 007074 469 LFGMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLAL 541 (619)
Q Consensus 469 L~~~~~gt~~al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~ 541 (619)
+++++.+|..++.++|||+++|.++++||++||+||+||||+|+++|+|||||||||||||+||++|+++|..
T Consensus 357 ~~~~~~at~~al~~~~~P~~~I~l~~l~~~~lG~L~~~~E~~t~~~G~llgINpFDQPGVE~gK~~~~~~l~~ 429 (446)
T PRK00973 357 INSEQKGTEIALTENGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPGVELGKKITYALLGR 429 (446)
T ss_pred HHHHhhhhHHHHhhCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988754
No 11
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.8e-93 Score=772.18 Aligned_cols=341 Identities=31% Similarity=0.458 Sum_probs=305.5
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCC-CceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNP-PLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEV 267 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~-~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a 267 (619)
+|++||+||||||+||+++++++|.+... .+++||++|+||+.+.++++++++ ++|+||||||||+|+||+.+++.+
T Consensus 57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~--~~TlviviSKSGtT~ETl~~~~~~ 134 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINL--ENTLFIVISKSGTTIETISIFKYL 134 (410)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCC--CcEEEEEEeCCCCCHHHHHHHHHH
Confidence 58999999999999999999999965432 468999999999999999999987 599999999999999999999999
Q ss_pred HHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcCCCHHHHHHHHHHHhHHh
Q 007074 268 QKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEAN 347 (619)
Q Consensus 268 ~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~GiDi~~lL~GA~~md~~~ 347 (619)
++|++..+ +.++|+|+||+++++|+++|+++|| ++|++|+|||||||+||+|||+|++++|+|+++||+||++||+||
T Consensus 135 ~~~~~~~~-~~~~~~v~vTd~~s~L~~~a~~~g~-~~f~ip~~VGGRfSvlSavGLlP~a~~G~di~~lL~GA~~m~~~~ 212 (410)
T PRK03868 135 LSHFKLDQ-ELKKNFLFITDPDSKLEQFAKENNI-KCFNIPKNVGGRFSVLSAVGIVPLALCGYDIKALLEGAKACKDSF 212 (410)
T ss_pred HHHhcccc-ccccEEEEEecCCchHHHhHHhcCC-cEEecCCCCCcceeecchhhHHHHHHhCccHHHHHHHHHHHHHHh
Confidence 99985433 4578999999988999999999998 899999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCChh
Q 007074 348 RTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQH 427 (619)
Q Consensus 348 ~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQH 427 (619)
..++++ .+++++.+|+.++.|++++|++||+++|+.|+.|||||||||+||+. |+.+++|++|||+.||+|||
T Consensus 213 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~L~~f~~w~~QL~~ES~GK~~---~~~~~~G~~p~~~~Gt~dqH 285 (410)
T PRK03868 213 FEQKED----HILKKAYFYATHKNAYNINVLFSYSDALKGFNDWYVQLWGESLGKKQ---GYKTRVGLTPIGLIGSRDQH 285 (410)
T ss_pred hcCCHH----HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHhhhhccccc---cCCCceeeEEeccCCCCchh
Confidence 877653 25566666777788999999999999999999999999999999983 44447999999999999999
Q ss_pred hHHHhhhccCCceeeEEEeeccCCC----CCC------ccccCCCCChHHHHHHhhccchhhcccCCcceeEEEeccCCh
Q 007074 428 AYIQQLREGVHNFFATFIEVLRDRP----PGH------DWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTP 497 (619)
Q Consensus 428 S~~Qll~qG~~~~~~tFI~v~~~~~----~~~------~~~l~~g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~~l~~ 497 (619)
||+||+|||++++|+|||.+.+.+. +.+ ...+..|++.++.+.+.+.+|..+|.++|||+++|+++++||
T Consensus 286 S~~Ql~~qG~~~~~~tfi~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~~a~~~at~~al~~~~~P~~~i~l~~l~~ 365 (410)
T PRK03868 286 SFLQLIMEGPRDKTVTFIKIKDFQNAPKIPNISLKGLESLDFVNGVSFNELINAQCDATMEALIAEDIPVDVITLEKLDE 365 (410)
T ss_pred HHHHHHhcCCcCCCeEEEEEcCcCCCcCccccccccccchhhhcCCCHHHHHHHHHHHHHHHHHhCCcCeEEEEeCCCCH
Confidence 9999999999999999999865311 110 112335788899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHH
Q 007074 498 RSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540 (619)
Q Consensus 498 ~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~ 540 (619)
++||+||+||||+|+++|+|||||||||||||+||++|+++|.
T Consensus 366 ~~lG~L~~~yE~~t~~~g~l~~INpFDQpGVE~gK~~~~~~l~ 408 (410)
T PRK03868 366 FSIGYLIYYYELLTSAVGKMLGINTYDQPGVEVGKRILKEKLQ 408 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999764
No 12
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=5.9e-70 Score=630.86 Aligned_cols=335 Identities=30% Similarity=0.380 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhh
Q 007074 160 QIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQL 239 (619)
Q Consensus 160 ~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L 239 (619)
+..+.+++|++|+++|++ ++|++||+||||||+|||+++.+++......++++|++|+||..+.++++.+
T Consensus 435 ~~~~~l~~i~~fa~~Ir~----------~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~ 504 (948)
T PRK09533 435 DELAHLAEYEAFAEEVRA----------EGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAV 504 (948)
T ss_pred HHHHHHHHHHHHHHHHhc----------CCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhC
Confidence 466899999999999996 6799999999999999999999999765444678999999999999999999
Q ss_pred CcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-ccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhh
Q 007074 240 GPELASTLVVVISKSGGTPETRNGLLEVQKAFREA-GLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEM 318 (619)
Q Consensus 240 ~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~-g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvl 318 (619)
++ ++|+|||+||||+|.||+++++++++|+++. |.+.++|+|+||+++|+|+++|+++||.++|.+|+|||||||+|
T Consensus 505 ~~--e~TLvIViSKSGtT~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTdpgs~L~~~A~~~G~~~vf~~~p~VGGRYSVL 582 (948)
T PRK09533 505 DL--ARTLFIVSSKSGGTLEPNIFKDYFFARVKEVLGAKAGRHFVAVTDPGSSLEKVAKEDGFRKIFHGDPDIGGRYSVL 582 (948)
T ss_pred Cc--ccEEEEEEeCCCCCHHHHHHHHHHHHHhhhhcccccCCeEEEEeCCCChHHHHHHHcCCeeEecCCCCCCcchHHh
Confidence 87 5999999999999999999999999999654 44568899999999999999999999955999999999999999
Q ss_pred hHhhHHHHHhcCCCHHHHHHHHHHHhHHhc-CCCcCCCHHHHHHHHH-HHHhcCCCCceEEEEechhchHhHHHHHHHHH
Q 007074 319 SAVGLLPAALQGIDVREMLAGASLMDEANR-TTVLRNNPAALLALCW-YWASDGVGSKDMVVLPYKDSLLLFSRYLQQLV 396 (619)
Q Consensus 319 SaVGLlPaal~GiDi~~lL~GA~~md~~~~-~~~l~~N~a~llAl~~-~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~ 396 (619)
|+|||+|++++|+||++||+||++|++++. ..++.+|||++||++. +|+. .| ++.++++|+++|+.|++|+|||+
T Consensus 583 SavGLvPaa~~GiDi~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~--~G-r~~V~i~Ys~~L~~f~~W~~QL~ 659 (948)
T PRK09533 583 SPFGLVPAAAAGIDVRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAAT--QG-RDKVTIVASPAIADFGAWAEQLI 659 (948)
T ss_pred hhhhhHHHHHhCchHHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHh--CC-CcEEEEEChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765 4578899999998864 5543 35 67788899999999999999999
Q ss_pred HhhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCCCCccccCCCCChHHHHHHhhccc
Q 007074 397 MESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGT 476 (619)
Q Consensus 397 mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~~~~l~~g~t~~d~L~~~~~gt 476 (619)
|||+||+ ++|++|.........+. .|.+.+|+.|. . ++.+....++|
T Consensus 660 aES~GK~--------g~Gl~Pv~~e~vg~~~~------~g~d~~fi~l~---~----------------~~~~~~~~~at 706 (948)
T PRK09533 660 AESTGKE--------GKGLIPIDGEPLGDPAV------YGNDRVFVYLR---L----------------AGEADAAQDAA 706 (948)
T ss_pred HhhcCCC--------CCCccCCcceeecccCC------CCCCcEEEEEe---c----------------cccchHHHHHH
Confidence 9999997 36888885422111121 14444444331 1 11123345678
Q ss_pred hhhcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHHHHHHHHHH
Q 007074 477 RSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKR 544 (619)
Q Consensus 477 ~~al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~~il~~~~~ 544 (619)
..+|.++|+|+++|.++ |+++||+||++||++|+++|+|||||||||||||+||++|+++|+...+
T Consensus 707 ~~AL~~~g~P~~~I~l~--~~~~LG~lf~l~E~atav~G~LlGINPFDQPgVE~~K~~~~~ll~~~~~ 772 (948)
T PRK09533 707 LAALEAAGHPVVRIVLD--SAEQLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIKTRELTAAYEK 772 (948)
T ss_pred HHHHHhcCCCeEEEEeC--ChHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhh
Confidence 88999999999999999 9999999999999999999999999999999999999999887765443
No 13
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=9.5e-52 Score=396.93 Aligned_cols=163 Identities=37% Similarity=0.583 Sum_probs=151.6
Q ss_pred ceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCC
Q 007074 374 KDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPP 453 (619)
Q Consensus 374 ~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~ 453 (619)
++++++||+++|+.|++|||||||||+||+.+++|+.+.+|++|||+.||+|||||+|++|||++++|+|||.+.++...
T Consensus 1 ~~~vl~~Y~~~L~~f~~w~qQL~~ES~GK~~~~~g~~~~~G~~p~g~~Gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~~~ 80 (164)
T cd05016 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGEDYPTGPIPWGAPGTNDQHSFFQLIHQGTKDKPVDFIAVKKPQND 80 (164)
T ss_pred CeEEEEEcHHHHHHHHHHHHHhHhhcCCCccccCCCcCCceeEEecCCCCCCCCcccchhhcCCCcEEEEEEEECCcCcc
Confidence 36899999999999999999999999999999999988899999999999999999999999999999999999764221
Q ss_pred CCccccCCCCChHHHHHHhhccchhhc-ccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHH
Q 007074 454 GHDWELEPGVTCGDYLFGMLQGTRSAL-YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGK 532 (619)
Q Consensus 454 ~~~~~l~~g~t~~d~L~~~~~gt~~al-~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK 532 (619)
.+....+.+.++.+.+.+.+|..|| +++|||+++|+++++||+++|+||++|||+|+++|+|||||||||||||+||
T Consensus 81 --~~~~~~~~~~~~~l~a~~~a~~~aL~~~g~~P~~~i~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFDQpgVE~gK 158 (164)
T cd05016 81 --VLDYLAGKTLHDLLLANCLATREALMFPGGRPSNTIVLPELTPYTLGALLALYEHKTAVQGALLGINPFDQPGVELGK 158 (164)
T ss_pred --hhhcccCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCChhHHHHH
Confidence 1344567889999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007074 533 KAAGEV 538 (619)
Q Consensus 533 ~~a~~i 538 (619)
++|++|
T Consensus 159 ~~a~~i 164 (164)
T cd05016 159 KLAKKI 164 (164)
T ss_pred HHHhcC
Confidence 999764
No 14
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=100.00 E-value=6.4e-38 Score=331.90 Aligned_cols=291 Identities=17% Similarity=0.115 Sum_probs=244.6
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
++++|+++|+|||+++.+.+...+.... +++++++.... ....++ ++++||++|+||+|.||+.+++.++
T Consensus 33 ~~~~I~i~G~GgS~~~a~~~~~~l~~~~-~~~~~~~~~~~------~~~~~~---~~dlvI~iS~SG~T~e~~~a~~~a~ 102 (337)
T PRK08674 33 KIDNIVISGMGGSGIGGDLLRILLFDEL-KVPVFVNRDYT------LPAFVD---EKTLVIAVSYSGNTEETLSAVEQAL 102 (337)
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHhcC-CCcEEEeCccc------hhhcCC---CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988873322 34555543311 122234 4899999999999999999999998
Q ss_pred HHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcch----------hhhHhhHHHHHhcCCCHHHHHH
Q 007074 269 KAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTS----------EMSAVGLLPAALQGIDVREMLA 338 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfS----------vlSaVGLlPaal~GiDi~~lL~ 338 (619)
+. +.++|+||+ +++|.++|+.+|+ .++.+|..++||+| +++.+|++|++.. |++++++
T Consensus 103 ~~--------ga~vIaIT~-~~~L~~~a~~~~~-~~i~ip~~~~~r~s~~~ll~~l~~~l~~~Gl~~~~~~--d~~~~~~ 170 (337)
T PRK08674 103 KR--------GAKIIAITS-GGKLKEMAKEHGL-PVIIVPGGYQPRAALGYLFTPLLKILEKLGLIPDKSA--EVLETKI 170 (337)
T ss_pred HC--------CCeEEEECC-CchHHHHHHhcCC-eEEEeCCCCcchhhHHHHHHHHHHHHHHcCCCccchh--hHHHHHH
Confidence 73 578999997 5689999999887 89999999999999 9999999997654 9999999
Q ss_pred HHHHHhHHhcCC-CcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceE
Q 007074 339 GASLMDEANRTT-VLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTV 417 (619)
Q Consensus 339 GA~~md~~~~~~-~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~ 417 (619)
|+.++.+.+... +..+|+|..+|.- ++.+..+++. +..+..++.||+|+|+||.| ..|
T Consensus 171 ~l~~~~~~~~~~~~~~~~~A~~lA~~-------~~~~~pv~~g-s~~~~~~a~~~~~~~~Ena~-------------~~~ 229 (337)
T PRK08674 171 VLSELAEGLKEKVPTLKNLAKRLAGK-------LYGRIPVIYG-SGLTLAVAYRWKTQINENAK-------------YPA 229 (337)
T ss_pred HHHHHHHhhCcCCCcccCHHHHHHHH-------HhCCCCEEEe-CcccHHHHHHHHHHHHHhcC-------------Ccc
Confidence 999999988643 4568999876651 1234677777 99999999999999999993 588
Q ss_pred eecCCCCChhhHHHhhhcc-CCceeeEEEeeccCCCCCCccccCCCCChHHHHHHhhccchhhcccCCcceeEEEec-cC
Q 007074 418 YGNKGSTDQHAYIQQLREG-VHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQ-EV 495 (619)
Q Consensus 418 ~g~~Gt~dQHS~~Qll~qG-~~~~~~tFI~v~~~~~~~~~~~l~~g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~-~l 495 (619)
+.+.+++|||+..|++++| +.+++++||.+.+ .+ ++.+...+..|++.+.+.++|++.|..+ +.
T Consensus 230 ~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~t~~~~~~~~~~~~~i~~~g~~ 295 (337)
T PRK08674 230 FYNEIPELNHNEIVGYERPQSLLKYFFVVVLRD-------------SE-HPRIKKRVEITIDILTEAVINVIEIYPEGNS 295 (337)
T ss_pred ccccCCcccccceeeccCchhhccceEEEEEcC-------------Cc-cHHHHHHHHHHHHHHHhcCCCeEEEecCCCc
Confidence 9999999999999999999 6788888886642 23 5566777889999999999999999999 69
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHHHH
Q 007074 496 TPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAG 536 (619)
Q Consensus 496 ~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~a~ 536 (619)
+++.+|+|++++++++++.|.++||||||||+||.+|+.+.
T Consensus 296 ~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~ie~~K~~~~ 336 (337)
T PRK08674 296 PLARIFSLIYLGDFASLYLAELRGVDPTPVPIIDYLKRRLA 336 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHhc
Confidence 99999999999999999999999999999999999999663
No 15
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=3.6e-34 Score=273.28 Aligned_cols=155 Identities=43% Similarity=0.644 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCC-CceEEEEeCCChhHHHHHHHhhCc
Q 007074 163 TTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNP-PLKIRFIDNTDPAGIDHQIAQLGP 241 (619)
Q Consensus 163 ~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~-~~~i~FvdN~DP~~i~~~l~~L~~ 241 (619)
+.+++|++|++++++| +++++||++|||||++|++++.+++.+... +++++|++|+||+.+.++++.+++
T Consensus 2 ~~~~~i~~~~~~i~~~---------~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~ 72 (158)
T cd05015 2 AELERIKEFAEKVRSG---------KKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDP 72 (158)
T ss_pred hHHHHHHHHHHHHhcC---------CCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCc
Confidence 4688999999999963 258999999999999999999999987653 578999999999999999999976
Q ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcc-ccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhH
Q 007074 242 ELASTLVVVISKSGGTPETRNGLLEVQKAFREAGL-EFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSA 320 (619)
Q Consensus 242 ~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~-~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSa 320 (619)
++|+||++||||+|.||+.+++.+++||++++. +.++|+|+||+++++|.+.|+.+++ ++|++|++||||||++|+
T Consensus 73 --~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~-~~~~~~~~vggR~S~Ls~ 149 (158)
T cd05015 73 --ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGL-NTFEIPDWVGGRFSVLSS 149 (158)
T ss_pred --ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcc-eeeeCCCCCCchHHHHhH
Confidence 599999999999999999999999999998866 3689999999998999888887777 899999999999999999
Q ss_pred hhHHHHHhc
Q 007074 321 VGLLPAALQ 329 (619)
Q Consensus 321 VGLlPaal~ 329 (619)
|||+|++++
T Consensus 150 ~gl~p~a~~ 158 (158)
T cd05015 150 VGGLPLALA 158 (158)
T ss_pred HHHHHHHHC
Confidence 999999874
No 16
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=99.98 E-value=4.7e-33 Score=256.91 Aligned_cols=129 Identities=20% Similarity=0.241 Sum_probs=111.0
Q ss_pred eEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccCCCCC
Q 007074 375 DMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPG 454 (619)
Q Consensus 375 ~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~ 454 (619)
+++.++|+++|..|++||.|||+||+||+ | +|++|.. |||+.| +++.-.+.+
T Consensus 1 dk~~~~y~~~l~~f~~W~~QL~AES~GK~----G----~Gl~Pv~------~hS~~q-----p~~~~~d~~--------- 52 (129)
T cd05798 1 DKVTIIASPGIASLGAWLEQLIAESTGKE----G----KGIIPVD------GEPLGD-----PAVYGDDRV--------- 52 (129)
T ss_pred CeEEEecchhHHhHHHHHHHHHHHhcCCC----C----ceeeecC------CCCCCC-----CCCCCCCeE---------
Confidence 46889999999999999999999999996 4 6999988 999999 433111110
Q ss_pred CccccCCCCChHHHHHHhhccchhhcccCCcceeEEEeccCChhhHHHHHHHHHHHHHHHHHhhCcCCCCCCchHHHHHH
Q 007074 455 HDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKA 534 (619)
Q Consensus 455 ~~~~l~~g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~~l~~~~LGaLialyE~av~~~g~L~gINpFDQPGVE~gK~~ 534 (619)
.+ ..+.++.+++..+||..||.++|+|+++|.++ |++++|+||++||++|+++|++||||||||||||+||++
T Consensus 53 ---~i--~L~~~~~~~~~~~at~~AL~~~g~P~~~i~~~--~~~~lG~l~~~~e~ata~~g~llgINpFDQPgVE~~K~~ 125 (129)
T cd05798 53 ---FV--YLRLAGEADADQEEALLALEAAGHPVIRIDLD--DAYDLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIE 125 (129)
T ss_pred ---EE--EEechhhhHHHHHHHHHHHHhCCCCeEEEecC--CHHHHHHHHHHHHHHHHHHHHhcCcCCCCCccHHHHHHH
Confidence 01 11467788889999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007074 535 AGEV 538 (619)
Q Consensus 535 a~~i 538 (619)
|+++
T Consensus 126 ~~~~ 129 (129)
T cd05798 126 TRRL 129 (129)
T ss_pred HhcC
Confidence 8753
No 17
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.75 E-value=3.1e-16 Score=165.15 Aligned_cols=282 Identities=18% Similarity=0.154 Sum_probs=191.9
Q ss_pred cceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHH
Q 007074 190 FTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQK 269 (619)
Q Consensus 190 ~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~ 269 (619)
+++|+++|+|||+++.+.+...|.....+++++++.+.. ....++ +++++|++|+||+|.||+..++.+++
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d~~------l~~~~~---~~dlvI~iS~SG~t~e~~~a~~~A~~ 91 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKDYR------LPRFVD---GKTLLIAVSYSGNTEETLSAVEEAKK 91 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcCcc------ccccCC---CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998887643124555554422 223344 48999999999999999999999876
Q ss_pred HHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchh---hhHhhHHHHHhcCCCHHHHHHHHHHHhHH
Q 007074 270 AFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSE---MSAVGLLPAALQGIDVREMLAGASLMDEA 346 (619)
Q Consensus 270 ~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSv---lSaVGLlPaal~GiDi~~lL~GA~~md~~ 346 (619)
. +.++|+||+ +++|.+.|+++|+ .++.+|+.++||||+ ++++++++....|.|+++.-+=-..
T Consensus 92 ~--------g~~ii~iT~-~g~L~~~a~~~~~-~~i~vP~~~~~R~s~~~~~~~~l~~l~~~~g~d~~~~~~~l~~---- 157 (308)
T TIGR02128 92 K--------GAKVIAITS-GGRLEEMAKERGL-DVIKIPKGLQPRAAFPYLLTPLILMLIKPLGIDIEEAELLEGG---- 157 (308)
T ss_pred c--------CCEEEEECC-CcHHHHHHHhcCC-eEEEcCCCCCCeeeHHHHHHHHHHHHHHHcCCChHHHHHHhcC----
Confidence 3 568999997 5689999998887 799999999999999 7888888877789986554221100
Q ss_pred hcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCCh
Q 007074 347 NRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQ 426 (619)
Q Consensus 347 ~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQ 426 (619)
...+..+|||..||.-. . | +.-|+..-++ ..-.+..|++-+.|-- |. ..+.+.-+.--
T Consensus 158 -~~~~~~~n~Ak~LA~~l---~---~-~~pvi~~~~~-~~~~A~R~k~~l~ena-k~------------~a~~~~lpe~~ 215 (308)
T TIGR02128 158 -LDTPKLKALAKRLAEEI---Y---N-RIPVIYSSSP-TRPIAERWKNEINENA-KS------------PAYYNILPELN 215 (308)
T ss_pred -CccccccCHHHHHHHHh---h---C-CCCEEEeCCc-cHHHHHHHHHHHHhhc-CC------------ccccccCCccc
Confidence 22356689999999732 1 2 3445555545 7888888888778743 32 22222233333
Q ss_pred hhHHHhhhccCCceeeEEEeeccCCCCCCccccCCCCChHHHHHHhhccchhhcccCCcceeEEEeccCCh-hhHHHHHH
Q 007074 427 HAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTP-RSVGALVA 505 (619)
Q Consensus 427 HS~~Qll~qG~~~~~~tFI~v~~~~~~~~~~~l~~g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~~l~~-~~LGaLia 505 (619)
|.....+...-..+..-|+ .++. .+.. .. +...+ |++- -|.+.+.|..+.-++ ..+=.|++
T Consensus 216 hn~i~~~~~~~~~~~~~~~---~d~~-d~~~-------~~--~r~~~--~~~~---~~~~~~~i~~~g~~~l~~l~~li~ 277 (308)
T TIGR02128 216 HNEIEGLEDPYGLYEIVFM---SDES-DHSR-------CP--KRVDI--TEKI---LGVVFISIYSRGNSLLARILSLIH 277 (308)
T ss_pred ccceeeeccccccceEEEe---eccc-cchh-------HH--HHHHH--HHHH---hCCceEEEEecCCCHHHHHHHHHH
Confidence 4333333221111111122 1111 0000 00 00000 1111 277888888888887 88999999
Q ss_pred HHHHHHHHHHHhhCcCCCCCCchHHHHHH
Q 007074 506 LYERAVGIYASLVNINAYHQPGVEAGKKA 534 (619)
Q Consensus 506 lyE~av~~~g~L~gINpFDQPGVE~gK~~ 534 (619)
+..++..+.+.+.|+||..-|=++..|+.
T Consensus 278 ~~d~as~yLA~~~g~dP~~~~~i~~lk~~ 306 (308)
T TIGR02128 278 LAGYVSVKLAELRGVDPEPVPPIDKLKRR 306 (308)
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHh
Confidence 99999999999999999999988888874
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.31 E-value=1.7e-11 Score=111.48 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=88.4
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
+|+++|+|+|+...+.+...+.... +.++++..... . ...++ +++++|++|+||+|.|++..++.+++.
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~~~~--~----~~~~~---~~dl~I~iS~SG~t~e~i~~~~~a~~~- 69 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEA-KIPVYVVKDYT--L----PAFVD---RKTLVIAVSYSGNTEETLSAVEQAKER- 69 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhcc-CCCEEEecCcc--C----cCCCC---CCCEEEEEECCCCCHHHHHHHHHHHHC-
Confidence 4889999999999998888776532 34666654321 1 11233 489999999999999999999999873
Q ss_pred HHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhh
Q 007074 272 REAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVG 322 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVG 322 (619)
+.++|+||+ ++.|.+++.++|. ..|++|+..+||+|+|.-+-
T Consensus 70 -------g~~iI~IT~-~~~l~~~~~~~~~-~~~~~p~~~~~r~s~~~~~~ 111 (119)
T cd05017 70 -------GAKIVAITS-GGKLLEMAREHGV-PVIIIPKGLQPRAAFPYLFT 111 (119)
T ss_pred -------CCEEEEEeC-CchHHHHHHHcCC-cEEECCCCCCCceeHHHHHH
Confidence 678999997 4579999998886 79999999999999998765
No 19
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.74 E-value=1e-07 Score=102.00 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhh
Q 007074 160 QIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQL 239 (619)
Q Consensus 160 ~i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L 239 (619)
.+....+.++++++.+.+ +++++|+++|.|+|+.....+...+.... ++++.+. .|..........+
T Consensus 24 ~l~~~~~~l~~~~~~l~~----------~~~~~I~~~g~GsS~~aa~~~~~~~~k~~-~i~v~~~--~~~~~~~~~~~~~ 90 (340)
T PRK11382 24 VLSHDVPLVHAIVEEMVK----------RDIDRIYFVACGSPLNAAQTAKHLADRFS-DLQVYAI--SGWEFCDNTPYRL 90 (340)
T ss_pred HHHhhhHHHHHHHHHHHh----------CCCCEEEEEEechHHHHHHHHHHHHHHHc-CCCeEEe--ccHHHHhcCCcCC
Confidence 344455677888888875 56899999999999999988887775543 2344332 2333322222234
Q ss_pred CcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCCCCcchhh
Q 007074 240 GPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWVGGRTSEM 318 (619)
Q Consensus 240 ~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvl 318 (619)
+ +++++|+||.||.|.||+..++.+++. +.++|+||. .+|+|.+.| .+ ++++.-..|--.++.
T Consensus 91 ~---~~~lvI~iS~SGeT~e~i~al~~ak~~--------Ga~~I~IT~~~~S~L~~~a---d~--~l~~~ag~~~~~~~~ 154 (340)
T PRK11382 91 D---DRCAVIGVSDYGKTEEVIKALELGRAC--------GALTAAFTKRADSPITSAA---EF--SIDYQADCIWEIHLL 154 (340)
T ss_pred C---CCCEEEEEcCCCCCHHHHHHHHHHHHc--------CCeEEEEECCCCChHHHhC---CE--EEEeCCCchHHHHHH
Confidence 4 379999999999999999999999872 679999998 478888887 33 455653222122222
Q ss_pred hHhhHHHHHhcCC----CHHHHHHHHHHHhHHh
Q 007074 319 SAVGLLPAALQGI----DVREMLAGASLMDEAN 347 (619)
Q Consensus 319 SaVGLlPaal~Gi----Di~~lL~GA~~md~~~ 347 (619)
....+.-.++.+. +.+++++..+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i 187 (340)
T PRK11382 155 LCYSVVLEMITRLAPNAEIGKIKNDLKQLPNAL 187 (340)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 2222211222221 2556666666666544
No 20
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=98.52 E-value=2.7e-07 Score=99.97 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCc
Q 007074 162 ETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGP 241 (619)
Q Consensus 162 ~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~ 241 (619)
.+..+.+++|++.+.. +++++|+++|.|+|+-....+..++.... ++++..+...+ ...+-...+++
T Consensus 24 ~~~~~~~~~~~~~~~~----------~~~~~i~~~g~GsS~~a~~~~~~~~~~~~-~i~v~~~~~~e--~~~~~~~~~~~ 90 (372)
T TIGR02815 24 QALRPALNAFLEPLLA----------RENLRIVLTGAGTSAFIGDALAPWLASHT-GLNVSAVPTTD--LVSNPRQYLDP 90 (372)
T ss_pred HHhHHHHHHHHHHHHh----------CCCCEEEEEechHHHHHHHHHHHHHHHhc-CCCEEEEeCcc--cccccccccCC
Confidence 3455678888888875 66889999999999999999998887654 35554432211 11111222332
Q ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHH
Q 007074 242 ELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRI 298 (619)
Q Consensus 242 ~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~ 298 (619)
+ ++||||.+|.||+|.||+.+++.+++. ..+.+.++||. .+|.|.+.++.
T Consensus 91 ~-~~~lvi~iSqSGeT~etv~a~~~ak~~------~~g~~~i~it~~~~s~la~~ad~ 141 (372)
T TIGR02815 91 T-RPTLLVSFARSGNSPESVAAVELADQL------LPECYHLVLTCNEEGALYRNAIN 141 (372)
T ss_pred C-CCeEEEEEeCCcCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCCHHHHhhcc
Confidence 1 479999999999999999999999872 01468899998 47899988864
No 21
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=6.3e-07 Score=96.15 Aligned_cols=110 Identities=22% Similarity=0.173 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcC
Q 007074 163 TTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPE 242 (619)
Q Consensus 163 ~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~ 242 (619)
.....+.++++.++. .++++|+.+|+|||+-....+..++..... ..+ +.-+ +..+...-... .
T Consensus 22 ~~~~~~~~l~~~l~~----------~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~-~~~-~~~~--~se~~~~~~~~--~ 85 (340)
T COG2222 22 ANRAVLAELADFLRK----------RGIDRILFVGCGSSLHAATPAKYLLERELG-LLV-AAIP--ASEFLTNGAKY--L 85 (340)
T ss_pred hhhhHHHHHHHHHHh----------CCCcEEEEEecCchHHHHHHHHHHHHHhhC-cee-eeec--hhHHhccCccc--c
Confidence 445566677777775 448999999999999999999999886543 232 2222 22222111112 1
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 243 LASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 243 l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
.+++++|++|+||+|+|++.+++.+++ .+.+.|++|. ++|+|.+.+
T Consensus 86 ~~~~lvi~~S~SG~TpE~vaa~~~a~~--------~ga~~i~lT~~~dSpLa~~a 132 (340)
T COG2222 86 GEDSLVIAFSQSGNTPESVAAAELAKE--------GGALTIALTNEEDSPLARAA 132 (340)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHhcc--------CCCeEEEEecCCCChhhhcC
Confidence 258999999999999999999999885 3789999998 478887776
No 22
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.42 E-value=7.2e-07 Score=81.46 Aligned_cols=115 Identities=19% Similarity=0.126 Sum_probs=79.9
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
+|+++|.|+|+.-...+...|.... +.++.+. .|.+........++ ++.++|++|+||+|.|+...++.+++.
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~---~~dl~I~iS~SG~t~~~~~~~~~a~~~- 73 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKES-KLPVFVY--NAAEFLHTGPKRLT---EKSVVILASHSGNTKETVAAAKFAKEK- 73 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhc-CCceEEE--cHHHHhhcCcccCC---CCcEEEEEeCCCCChHHHHHHHHHHHc-
Confidence 3889999999988888887776532 2333322 12222222223344 479999999999999999999999873
Q ss_pred HHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhc
Q 007074 272 REAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ 329 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~ 329 (619)
+..+|+||+ ++++|.+.| . ..|.++.. .++..++=|+...++
T Consensus 74 -------g~~vi~iT~~~~s~la~~a---d--~~l~~~~~----~~~~~~~~~~~~~~~ 116 (120)
T cd05710 74 -------GATVIGLTDDEDSPLAKLA---D--YVIVYGFE----IDAVEEKYLLLYMLA 116 (120)
T ss_pred -------CCeEEEEECCCCCcHHHhC---C--EEEEccCC----cCccchHHHHHHHHH
Confidence 678999998 478888777 3 36777653 566667766655544
No 23
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.35 E-value=2.8e-06 Score=76.99 Aligned_cols=91 Identities=26% Similarity=0.250 Sum_probs=67.5
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
+|.++|+|+|+.-...+...|..... .++.+.+ +..+......++ ++.++|++|.||.|.|++..++.+++.
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~-~~~~~~~---~~~~~~~~~~~~---~~d~~I~iS~sG~t~e~~~~~~~a~~~- 72 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAG-IPVEVEA---ASEFRYRRPLLD---EDTLVIAISQSGETADTLAALRLAKEK- 72 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcC-CceEEEe---hhHhhhcCCCCC---CCcEEEEEeCCcCCHHHHHHHHHHHHc-
Confidence 37899999999888888777765431 3444443 333333333344 489999999999999999999999873
Q ss_pred HHhccccCCEEEEEec-CCchhhhhHH
Q 007074 272 REAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
+.++|+||+ ++++|.+.++
T Consensus 73 -------g~~vi~iT~~~~s~la~~ad 92 (126)
T cd05008 73 -------GAKTVAITNVVGSTLAREAD 92 (126)
T ss_pred -------CCeEEEEECCCCChHHHhCC
Confidence 689999998 4688888773
No 24
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=98.33 E-value=5.7e-06 Score=80.17 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCC----CCCceEEEEeCCChhHHHHH-----
Q 007074 165 LDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPD----NPPLKIRFIDNTDPAGIDHQ----- 235 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~----~~~~~i~FvdN~DP~~i~~~----- 235 (619)
.++|++.++.+.+ .+ .+-+.|+++|.|+|+.-++-+..-|... ..+++++++.. |+..+...
T Consensus 16 ~~~i~~a~~~i~~-~i-------~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 86 (177)
T cd05006 16 AEAIEQAAQLLAE-AL-------LNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTT-DTSILTAIANDYG 86 (177)
T ss_pred HHHHHHHHHHHHH-HH-------HCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccC-CHHHHHHHhccCC
Confidence 4556666666542 00 1236799999999998877665555321 12355665542 33322211
Q ss_pred ---------HHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCccee
Q 007074 236 ---------IAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARF 305 (619)
Q Consensus 236 ---------l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F 305 (619)
...++ ++.++|++|.||.|.||+..++.+++. +.++|+||+ .+++|.+.| . ..|
T Consensus 87 ~~~~~~~~~~~~~~---~~Dv~I~iS~SG~t~~~i~~~~~ak~~--------Ga~vI~IT~~~~s~La~~a---D--~~l 150 (177)
T cd05006 87 YEEVFSRQVEALGQ---PGDVLIGISTSGNSPNVLKALEAAKER--------GMKTIALTGRDGGKLLELA---D--IEI 150 (177)
T ss_pred HHHHHHHHHHHhCC---CCCEEEEEeCCCCCHHHHHHHHHHHHC--------CCEEEEEeCCCCCchhhhC---C--EEE
Confidence 12344 378999999999999999999999873 788999998 478888877 3 367
Q ss_pred eccCCCCCcc
Q 007074 306 PMFDWVGGRT 315 (619)
Q Consensus 306 ~~pd~VGGRf 315 (619)
.+|..--+|.
T Consensus 151 ~~~~~~~~~~ 160 (177)
T cd05006 151 HVPSDDTPRI 160 (177)
T ss_pred EeCCCChHHH
Confidence 7776555553
No 25
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=98.21 E-value=1.3e-05 Score=77.86 Aligned_cols=100 Identities=24% Similarity=0.289 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCC
Q 007074 165 LDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELA 244 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~ 244 (619)
.+.++++++.+.+ -++|.++|+|+|..-.+.+..-|... +++++++.... ...++ +
T Consensus 20 ~~~l~~~~~~i~~------------a~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~~~~-------~~~~~---~ 75 (179)
T cd05005 20 EEELDKLISAILN------------AKRIFVYGAGRSGLVAKAFAMRLMHL--GLNVYVVGETT-------TPAIG---P 75 (179)
T ss_pred HHHHHHHHHHHHh------------CCeEEEEecChhHHHHHHHHHHHHhC--CCeEEEeCCCC-------CCCCC---C
Confidence 3567788888863 26899999999988777777666532 34666663211 12344 3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
+.++|++|.||.|.|+...++.+++ .+.++|+||+ .+++|.+.|
T Consensus 76 ~D~vI~iS~sG~t~~~i~~~~~ak~--------~g~~iI~IT~~~~s~la~~a 120 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEKAKK--------AGAKVVLITSNPDSPLAKLA 120 (179)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH--------CCCeEEEEECCCCCchHHhC
Confidence 7899999999999999999999987 2788999998 578888877
No 26
>PRK15482 transcriptional regulator MurR; Provisional
Probab=98.16 E-value=4.4e-05 Score=79.49 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
++++++++.+++ -+.|.++|+|.|..-++.+..-|..-. .++.+. .|+.........+++ +
T Consensus 123 ~~l~~~~~~i~~------------A~~I~i~G~G~S~~~A~~l~~~l~~~g--~~~~~~--~d~~~~~~~~~~~~~---~ 183 (285)
T PRK15482 123 ARLQKIIEVISK------------APFIQITGLGGSALVGRDLSFKLMKIG--YRVACE--ADTHVQATVSQALKK---G 183 (285)
T ss_pred HHHHHHHHHHHh------------CCeeEEEEeChhHHHHHHHHHHHHhCC--CeeEEe--ccHhHHHHHHhcCCC---C
Confidence 567888888863 367999999999887777777665432 345443 355554444555654 7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccC
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd 309 (619)
.++|++|.||.|.|+...++.+++ .+.++|+||+ .+++|.+.| .+ +|.++.
T Consensus 184 Dv~i~iS~sg~t~~~~~~~~~a~~--------~g~~iI~IT~~~~s~la~~a---d~--~l~~~~ 235 (285)
T PRK15482 184 DVQIAISYSGSKKEIVLCAEAARK--------QGATVIAITSLADSPLRRLA---HF--TLDTVS 235 (285)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH--------CCCEEEEEeCCCCCchHHhC---CE--EEEcCC
Confidence 899999999999999999999987 2788999998 478888877 33 565554
No 27
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=98.16 E-value=1.5e-05 Score=77.16 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
++++++++.+.+ -+.|.++|.|+|+.-.+.+..-|... +++++++.... ...++ ++
T Consensus 18 ~~~~~~~~~l~~------------a~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~~~~-------~~~~~---~~ 73 (179)
T TIGR03127 18 EELDKLADKIIK------------AKRIFVAGAGRSGLVGKAFAMRLMHL--GFNVYVVGETT-------TPSIK---KG 73 (179)
T ss_pred HHHHHHHHHHHh------------CCEEEEEecCHHHHHHHHHHHHHHhC--CCeEEEeCCcc-------cCCCC---CC
Confidence 467788888863 36799999999987776666655432 34666663321 12344 37
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
.++|++|+||.|.|+...++.+++ .+.++|+||+ .+++|.+.|
T Consensus 74 Dv~I~iS~sG~t~~~i~~~~~ak~--------~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 74 DLLIAISGSGETESLVTVAKKAKE--------IGATVAAITTNPESTLGKLA 117 (179)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHH--------CCCeEEEEECCCCCchHHhC
Confidence 899999999999999999999987 2788999998 478888887
No 28
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.16 E-value=5.6e-05 Score=68.42 Aligned_cols=112 Identities=25% Similarity=0.248 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcE
Q 007074 167 AVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAST 246 (619)
Q Consensus 167 ~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~T 246 (619)
+++++++.+.+ -+.|+++|.|.|..-.+.+...|.... ..+.++++ .+........+++ ++
T Consensus 2 ~i~~~~~~i~~------------~~~i~i~g~g~s~~~a~~~~~~l~~~~--~~~~~~~~--~~~~~~~~~~~~~---~~ 62 (139)
T cd05013 2 ALEKAVDLLAK------------ARRIYIFGVGSSGLVAEYLAYKLLRLG--KPVVLLSD--PHLQLMSAANLTP---GD 62 (139)
T ss_pred HHHHHHHHHHh------------CCEEEEEEcCchHHHHHHHHHHHHHcC--CceEEecC--HHHHHHHHHcCCC---CC
Confidence 56778888863 368999999999887777777776543 35666644 4444444445553 79
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhHHHhCCcceeeccCC
Q 007074 247 LVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTVRIEGWLARFPMFDW 310 (619)
Q Consensus 247 LvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A~~~g~~~~F~~pd~ 310 (619)
++|++|.||.|.+++..++.+++. +.++|+||++ ++++.+.+ . ..|.+|..
T Consensus 63 ~~i~iS~~g~~~~~~~~~~~a~~~--------g~~iv~iT~~~~~~l~~~~---d--~~i~~~~~ 114 (139)
T cd05013 63 VVIAISFSGETKETVEAAEIAKER--------GAKVIAITDSANSPLAKLA---D--IVLLVSSE 114 (139)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc--------CCeEEEEcCCCCChhHHhc---C--EEEEcCCC
Confidence 999999999999999888887762 6789999985 56777766 2 25666543
No 29
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=98.11 E-value=8.6e-06 Score=74.02 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=68.4
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
.|.++|.|+|..-.+.+...|..- +.++.++. |+..+...+..++ ++.++|++|.||.|.|+...++.+++.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~---~~d~vi~iS~sG~t~~~~~~~~~a~~~- 73 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSST--GTPAFFLH--PTEALHGDLGMVT---PGDVVIAISNSGETDELLNLLPHLKRR- 73 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcC--CCceEEcc--cchhhccccCcCC---CCCEEEEEeCCCCCHHHHHHHHHHHHC-
Confidence 489999999998888887777543 24555553 3333333344454 378999999999999999999999873
Q ss_pred HHhccccCCEEEEEec-CCchhhhhHH
Q 007074 272 REAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
+.++|+||+ ++++|.+.|+
T Consensus 74 -------g~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 74 -------GAPIIAITGNPNSTLAKLSD 93 (128)
T ss_pred -------CCeEEEEeCCCCCchhhhCC
Confidence 688999999 4688888773
No 30
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=98.11 E-value=6.6e-05 Score=78.26 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
+.+.++++.|.+ -+.|.++|+|+|..-++-+..-|... ++++.++. |...+......+++ +
T Consensus 128 ~~l~~~~~~i~~------------A~~I~i~G~G~S~~~A~~l~~~l~~~--g~~~~~~~--d~~~~~~~~~~~~~---~ 188 (292)
T PRK11337 128 DEFHRAARFFYQ------------ARQRDLYGAGGSAAIARDVQHKFLRI--GVRCQAYD--DAHIMLMSAALLQE---G 188 (292)
T ss_pred HHHHHHHHHHHc------------CCeEEEEEecHHHHHHHHHHHHHhhC--CCeEEEcC--CHHHHHHHHhcCCC---C
Confidence 677888888863 46799999999986666555544432 34566553 44444444455654 7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccC
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd 309 (619)
.++|++|.||.|.|+...++.|++ .+.++|+||+ .+++|.+.| .+ +|.+|.
T Consensus 189 Dl~I~iS~sG~t~~~~~~~~~ak~--------~g~~ii~IT~~~~s~la~~a---d~--~l~~~~ 240 (292)
T PRK11337 189 DVVLVVSHSGRTSDVIEAVELAKK--------NGAKIICITNSYHSPIAKLA---DY--VICSTA 240 (292)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH--------CCCeEEEEeCCCCChhHHhC---CE--EEEcCC
Confidence 889999999999999999999887 3789999998 478888877 33 566654
No 31
>PRK13938 phosphoheptose isomerase; Provisional
Probab=98.10 E-value=6e-05 Score=75.21 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=71.3
Q ss_pred ceEEEEecccCchHHHHHHHHhcCC----CCCceEEEEeCCChh------------HHHHHHHhhCcCCCcEEEEEEcCC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPD----NPPLKIRFIDNTDPA------------GIDHQIAQLGPELASTLVVVISKS 254 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~----~~~~~i~FvdN~DP~------------~i~~~l~~L~~~l~~TLvIViSKS 254 (619)
..|+++|.|||++-.+.+..-|.+. .+.++...+..-|+. .+.+.+...-. +..++|++|.|
T Consensus 46 ~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~--~~DllI~iS~S 123 (196)
T PRK13938 46 ARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSAR--PGDTLFAISTS 123 (196)
T ss_pred CEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCC--CCCEEEEEcCC
Confidence 5699999999998887776655421 122333333221211 11233333322 47899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCC
Q 007074 255 GGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWV 311 (619)
Q Consensus 255 GtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~V 311 (619)
|+|.|++..++.+++. +.++|++|+ ++++|.+.+ .+ .+.+|..-
T Consensus 124 G~t~~vi~a~~~Ak~~--------G~~vI~iT~~~~s~La~~a---D~--~l~v~~~e 168 (196)
T PRK13938 124 GNSMSVLRAAKTAREL--------GVTVVAMTGESGGQLAEFA---DF--LINVPSRD 168 (196)
T ss_pred CCCHHHHHHHHHHHHC--------CCEEEEEeCCCCChhhhhC---CE--EEEeCCCc
Confidence 9999999999999873 788999998 478888876 33 56676643
No 32
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=98.05 E-value=4e-05 Score=73.11 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=72.4
Q ss_pred ceEEEEecccCchHHHHHHHHhcC----CCCCceEEEEeCCChhHH-------------HHHHH-hhCcCCCcEEEEEEc
Q 007074 191 TSILSVGIGGSALGPQFVAEALAP----DNPPLKIRFIDNTDPAGI-------------DHQIA-QLGPELASTLVVVIS 252 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~----~~~~~~i~FvdN~DP~~i-------------~~~l~-~L~~~l~~TLvIViS 252 (619)
+.|.++|.|+|+.=++.+...+.. ...++++.++. .|+..+ .+.++ .++ ++.++|++|
T Consensus 12 ~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~D~~i~iS 87 (154)
T TIGR00441 12 GKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALS-ADVSHLTCVSNDYGYEDVFSRQVEALGQ---KGDVLLGIS 87 (154)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecC-CcHHHHHHhhccCCHHHHHHHHHHHhCC---CCCEEEEEc
Confidence 579999999998766666543321 12234555543 143221 11122 233 378999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCCCCc
Q 007074 253 KSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWVGGR 314 (619)
Q Consensus 253 KSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~VGGR 314 (619)
.||.|.|++..++.+++. +..+|+||+ ++++|.+.| . -+|.+|+.--||
T Consensus 88 ~sG~t~~~~~~~~~a~~~--------g~~ii~iT~~~~s~l~~~a---d--~~l~~~~~~~~~ 137 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDK--------GMKTITLAGKDGGKMAGLA---D--IELRVPHFYTPR 137 (154)
T ss_pred CCCCCHHHHHHHHHHHHC--------CCEEEEEeCCCCCchhhhC---C--EEEEeCCCCcHH
Confidence 999999999999999873 788999998 478888776 3 367787765444
No 33
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=98.03 E-value=5.2e-05 Score=79.27 Aligned_cols=106 Identities=25% Similarity=0.256 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCC
Q 007074 165 LDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELA 244 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~ 244 (619)
.+++.+.++.+.+ -+.|+++|+|.|+.=+.-+...|..-. .++..++ |+......+..+++
T Consensus 117 ~~~l~~av~~L~~------------A~rI~~~G~g~S~~vA~~~~~~l~~ig--~~~~~~~--d~~~~~~~~~~~~~--- 177 (281)
T COG1737 117 EEALERAVELLAK------------ARRIYFFGLGSSGLVASDLAYKLMRIG--LNVVALS--DTHGQLMQLALLTP--- 177 (281)
T ss_pred HHHHHHHHHHHHc------------CCeEEEEEechhHHHHHHHHHHHHHcC--CceeEec--chHHHHHHHHhCCC---
Confidence 4567777888763 467999999999877776666665432 3555554 44444456777875
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhHH
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTVR 297 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A~ 297 (619)
+.++|++|.||.|.|++..++.+++. +.++|+||+. +++|.+.|+
T Consensus 178 ~Dv~i~iS~sG~t~e~i~~a~~ak~~--------ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 178 GDVVIAISFSGYTREIVEAAELAKER--------GAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHC--------CCcEEEEcCCCCCchhhhhc
Confidence 78999999999999999999999983 7899999995 899999984
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.00 E-value=2.8e-05 Score=81.94 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
+++.+.++.+.. .-..|.+.|.|+|+.-++-+..-|..- +.+.++++ |+..+......++ ++
T Consensus 29 ~~~~~~~~~l~~-----------~~~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~---~~ 90 (321)
T PRK11543 29 DDFVRAANIILH-----------CEGKVVVSGIGKSGHIGKKIAATLAST--GTPAFFVH--PAEALHGDLGMIE---SR 90 (321)
T ss_pred HHHHHHHHHHHh-----------cCCcEEEEecChhHHHHHHHHHHHHcC--CCceeecC--hHHHhhCCcCccC---CC
Confidence 356677777763 224799999999998888877766543 24555553 3333333334454 37
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHH
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
.++|++|.||.|.|+...++.+++. +..+|+||+ ++|+|.+.|.
T Consensus 91 d~~i~iS~sG~t~~~~~~~~~ak~~--------g~~vI~iT~~~~s~la~~ad 135 (321)
T PRK11543 91 DVMLFISYSGGAKELDLIIPRLEDK--------SIALLAMTGKPTSPLGLAAK 135 (321)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHc--------CCeEEEEECCCCChhHHhCC
Confidence 8999999999999999999999873 788999999 4788888883
No 35
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.98 E-value=5e-05 Score=78.50 Aligned_cols=105 Identities=23% Similarity=0.195 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
++|.++++.|.+ -++|.++|+|+|..-++-+..-|... +.++++. .|+..+...+..+++ +
T Consensus 116 ~~l~~~~~~i~~------------a~~I~i~G~G~s~~~A~~~~~~l~~~--g~~~~~~--~d~~~~~~~~~~~~~---~ 176 (278)
T PRK11557 116 EKLHECVTMLRS------------ARRIILTGIGASGLVAQNFAWKLMKI--GINAVAE--RDMHALLATVQALSP---D 176 (278)
T ss_pred HHHHHHHHHHhc------------CCeEEEEecChhHHHHHHHHHHHhhC--CCeEEEc--CChHHHHHHHHhCCC---C
Confidence 677788888863 36899999999987777777666543 2355543 466666667777875 6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhHH
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTVR 297 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A~ 297 (619)
.++|++|.||.|.|+...++.+++. +..+|+||++ .+++.+.|.
T Consensus 177 Dv~I~iS~sg~~~~~~~~~~~ak~~--------ga~iI~IT~~~~s~la~~ad 221 (278)
T PRK11557 177 DLLLAISYSGERRELNLAADEALRV--------GAKVLAITGFTPNALQQRAS 221 (278)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHc--------CCCEEEEcCCCCCchHHhCC
Confidence 7899999999999999999999872 7889999994 788888773
No 36
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=97.97 E-value=8.5e-05 Score=76.78 Aligned_cols=105 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCC
Q 007074 165 LDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELA 244 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~ 244 (619)
.+++.++++.|.+ -+.|.++|.|+|+.-...+...|... ++++...+ |..........+++
T Consensus 115 ~~~i~~~~~~i~~------------a~~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~~--- 175 (284)
T PRK11302 115 PSAINRAVDLLTQ------------AKKISFFGLGASAAVAHDAQNKFFRF--NVPVVYFD--DIVMQRMSCMNSSD--- 175 (284)
T ss_pred HHHHHHHHHHHHc------------CCeEEEEEcchHHHHHHHHHHHHHhc--CCceEecC--CHHHHHHHHHhCCC---
Confidence 4668888888863 36799999999987766554444332 34444443 33222222344553
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhH
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTV 296 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A 296 (619)
+.++|++|.||.|.|++..++.|++. +.++|+||+++++|.+.|
T Consensus 176 ~D~vI~iS~sG~t~~~~~~~~~ak~~--------g~~vI~IT~~~s~l~~~a 219 (284)
T PRK11302 176 GDVVVLISHTGRTKSLVELAQLAREN--------GATVIAITSAGSPLAREA 219 (284)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHc--------CCeEEEECCCCChhHHhC
Confidence 78999999999999999999999873 789999998778887777
No 37
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=97.95 E-value=3e-05 Score=70.11 Aligned_cols=101 Identities=22% Similarity=0.132 Sum_probs=71.8
Q ss_pred cceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHH
Q 007074 190 FTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQK 269 (619)
Q Consensus 190 ~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~ 269 (619)
-++|+++|.|.|+.-++.+...|..... ...+... ....+...+..+++ ++++|++|.||.|.|+...++.+++
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~---~d~vi~is~sg~~~~~~~~~~~ak~ 78 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKLQKLGR--IVVISYE-AGEFFHGPLENLDP---DDLVIIISYSGETRELIELLRFAKE 78 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHHHHHHS--SEEEEEE-HHHHHTTGGGGCST---TEEEEEEESSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHhcC--cceeccc-hHHHhhhhcccccc---cceeEeeeccccchhhhhhhHHHHh
Confidence 3689999999998877777666643221 2333322 23344554666764 8999999999999999999998886
Q ss_pred HHHHhccccCCEEEEEecC-CchhhhhHHHhCCcceeeccC
Q 007074 270 AFREAGLEFAKQGVAITQE-NSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 270 ~l~~~g~~~~~h~VaVT~~-~s~L~~~A~~~g~~~~F~~pd 309 (619)
.+.++|+||++ ++++.+.+ . .+|.+|.
T Consensus 79 --------~g~~vi~iT~~~~~~l~~~a---d--~~l~~~~ 106 (131)
T PF01380_consen 79 --------RGAPVILITSNSESPLARLA---D--IVLYIPT 106 (131)
T ss_dssp --------TTSEEEEEESSTTSHHHHHS---S--EEEEEES
T ss_pred --------cCCeEEEEeCCCCCchhhhC---C--EEEEecC
Confidence 36889999984 67777776 3 3565554
No 38
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.94 E-value=0.00012 Score=73.06 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=73.2
Q ss_pred ceEEEEecccCchHHHHHHHHh-cCC---CCCceEEEEeCCChhH-------------HHHHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAEAL-APD---NPPLKIRFIDNTDPAG-------------IDHQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL-~~~---~~~~~i~FvdN~DP~~-------------i~~~l~~L~~~l~~TLvIViSK 253 (619)
..|.++|.|||+.-++-+..-| .+. +.+++...+. .|... +.+.++.+.. +.-+++++|.
T Consensus 42 ~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~-~d~~~~ta~and~~~~~~f~~ql~~~~~--~gDvli~iS~ 118 (196)
T PRK10886 42 NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN-TDNVVLTAIANDRLHDEVYAKQVRALGH--AGDVLLAIST 118 (196)
T ss_pred CEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEec-CcHHHHHHHhccccHHHHHHHHHHHcCC--CCCEEEEEeC
Confidence 5799999999988777766554 222 3345555442 13332 2233443333 4788999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCC
Q 007074 254 SGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDW 310 (619)
Q Consensus 254 SGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~ 310 (619)
||+|.+.+..++.+++ .+.++|+||. ++++|.+++.... -.+.+|..
T Consensus 119 SG~s~~v~~a~~~Ak~--------~G~~vI~IT~~~~s~l~~l~~~~D--~~i~ip~~ 166 (196)
T PRK10886 119 RGNSRDIVKAVEAAVT--------RDMTIVALTGYDGGELAGLLGPQD--VEIRIPSH 166 (196)
T ss_pred CCCCHHHHHHHHHHHH--------CCCEEEEEeCCCCChhhhccccCC--EEEEcCCC
Confidence 9999999999999987 3788999998 4788888742223 36778764
No 39
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.86 E-value=0.00011 Score=85.64 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=67.0
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
++++|+++|.|+|+.....+..++.... ++++..... .+.... ...+. +++++|++|.||+|.||+.+++.++
T Consensus 362 ~~~~I~~~G~GsS~~aa~~a~~~l~kl~-~i~v~~~~~--sef~~~-~~~~~---~~~lvI~ISqSGeT~eti~Al~~Ak 434 (680)
T PLN02981 362 RSRRIVFIGCGTSYNAALAARPILEELS-GVPVTMELA--SDLLDR-QGPIY---REDTAVFVSQSGETADTLRALEYAK 434 (680)
T ss_pred cCCEEEEEEecHHHHHHHHHHHHHHHHh-CCCEEEecc--hHHHhc-cccCC---CCCeEEEEeCCcCCHHHHHHHHHHH
Confidence 3688999999999999988877776543 244433221 111111 11222 3688889999999999999999998
Q ss_pred HHHHHhccccCCEEEEEecC-CchhhhhH
Q 007074 269 KAFREAGLEFAKQGVAITQE-NSLLDNTV 296 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~~-~s~L~~~A 296 (619)
+. +.++|+||.+ +|+|.+.|
T Consensus 435 ~~--------Ga~~IaITn~~~S~La~~a 455 (680)
T PLN02981 435 EN--------GALCVGITNTVGSAISRGT 455 (680)
T ss_pred HC--------CCcEEEEECCCCChhHhcc
Confidence 72 5789999984 78888877
No 40
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.82 E-value=0.00018 Score=70.93 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=67.8
Q ss_pred ceEEEEecccCchHHHHH-HHHhcCC---CCCceEEEEeCCChhHH-------------HHHH-HhhCcCCCcEEEEEEc
Q 007074 191 TSILSVGIGGSALGPQFV-AEALAPD---NPPLKIRFIDNTDPAGI-------------DHQI-AQLGPELASTLVVVIS 252 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v-~~aL~~~---~~~~~i~FvdN~DP~~i-------------~~~l-~~L~~~l~~TLvIViS 252 (619)
..|.++|.|+|++-++.+ .++.... +.++++.++. .||..+ .+.+ ..++ ++.++|++|
T Consensus 39 ~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~---~~Dl~i~iS 114 (188)
T PRK13937 39 GKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALT-TDTSALTAIGNDYGFERVFSRQVEALGR---PGDVLIGIS 114 (188)
T ss_pred CEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEecc-CcHHHHHHHhccCCHHHHHHHHHHhhCC---CCCEEEEEe
Confidence 579999999998655433 2332111 2234555442 233221 1112 2344 379999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCC
Q 007074 253 KSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDW 310 (619)
Q Consensus 253 KSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~ 310 (619)
.||.|.|++..++.+++. +..+|+||+ ++++|.+.+ .+ ++.+|..
T Consensus 115 ~sG~t~~~~~~~~~ak~~--------g~~~I~iT~~~~s~L~~~a---d~--~l~~~~~ 160 (188)
T PRK13937 115 TSGNSPNVLAALEKAREL--------GMKTIGLTGRDGGKMKELC---DH--LLIVPSD 160 (188)
T ss_pred CCCCcHHHHHHHHHHHHC--------CCeEEEEeCCCCChhHHhC---CE--EEEeCCC
Confidence 999999999999999873 788999998 478888877 32 5666653
No 41
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.82 E-value=0.00024 Score=75.22 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcE
Q 007074 167 AVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAST 246 (619)
Q Consensus 167 ~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~T 246 (619)
++++.++.+.+ .-+.|.++|.|.|+.-.+.+...|..- +.++.++.. ..........++ ++.
T Consensus 35 ~l~~~~~~l~~-----------a~~~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~~--~~~~~~~~~~~~---~~d 96 (326)
T PRK10892 35 DFTLACEKMFW-----------CKGKVVVMGMGKSGHIGRKMAATFAST--GTPSFFVHP--GEAAHGDLGMVT---PQD 96 (326)
T ss_pred HHHHHHHHHHh-----------cCCeEEEEeCcHhHHHHHHHHHHHhcC--CceeEEeCh--HHhhccccccCC---CCC
Confidence 46677777752 114699999999998887777766542 345665522 222222334455 378
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHH
Q 007074 247 LVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 247 LvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
++|++|.||.|.|+...++.+++. +..+|+||+ ++++|.+.|.
T Consensus 97 ~~I~iS~sG~t~~~~~~~~~ak~~--------g~~vi~iT~~~~s~la~~ad 140 (326)
T PRK10892 97 VVIAISNSGESSEILALIPVLKRL--------HVPLICITGRPESSMARAAD 140 (326)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHC--------CCcEEEEECCCCCcccccCC
Confidence 999999999999999999999872 688999998 4788888873
No 42
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.81 E-value=0.00024 Score=70.39 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred ceEEEEecccCchHHHHHHHHhcC-C---CCCceEEEEeCCChhHH-------------HHHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAP-D---NPPLKIRFIDNTDPAGI-------------DHQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~-~---~~~~~i~FvdN~DP~~i-------------~~~l~~L~~~l~~TLvIViSK 253 (619)
..|+++|.|+|++=++.+..-|.+ . ..++++... .|+..+ .+....+.. +..++|++|.
T Consensus 45 ~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~--~~Dv~I~iS~ 120 (192)
T PRK00414 45 GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGR--EGDVLLGIST 120 (192)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCC--CCCEEEEEeC
Confidence 579999999998866666544432 1 223455444 355332 222333322 4789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccC
Q 007074 254 SGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 254 SGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd 309 (619)
||.|.+++..++.+++. +.++|+||. .+++|.+.+ .+ ++.+|.
T Consensus 121 SG~t~~~i~~~~~ak~~--------g~~iI~iT~~~~s~l~~~a---d~--~l~~~~ 164 (192)
T PRK00414 121 SGNSGNIIKAIEAARAK--------GMKVITLTGKDGGKMAGLA---DI--EIRVPH 164 (192)
T ss_pred CCCCHHHHHHHHHHHHC--------CCeEEEEeCCCCChhHHhC---CE--EEEeCC
Confidence 99999999999999873 788999998 478888876 33 566665
No 43
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00016 Score=72.46 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=73.9
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
.|||.|+|=|++=.+.+.--|..- +.+.+|+.-.+. .+-.+--+.+ .=+||.||+||.|.|-++.+..+|+
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~--G~~a~fv~p~ea--~hgdlg~i~~---~DvviaiS~SGeT~el~~~~~~aK~-- 111 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAST--GTPAFFVGPAEA--LHGDLGMITP---GDVVIAISGSGETKELLNLAPKAKR-- 111 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHcc--CCceEEecCchh--ccCCccCCCC---CCEEEEEeCCCcHHHHHHHHHHHHH--
Confidence 599999999999998887777654 357899974321 1222333443 6789999999999999999999987
Q ss_pred HHhccccCCEEEEEec-CCchhhhhHHHhCCcceeecc
Q 007074 272 REAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMF 308 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~p 308 (619)
.+..+|+||+ ++|.|.+.| ++ ++.+|
T Consensus 112 ------~g~~liaiT~~~~SsLak~a---Dv--vl~ip 138 (202)
T COG0794 112 ------LGAKLIAITSNPDSSLAKAA---DV--VLVIP 138 (202)
T ss_pred ------cCCcEEEEeCCCCChHHHhc---Ce--EEEcc
Confidence 4889999999 578888877 43 55555
No 44
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=97.76 E-value=0.00011 Score=84.57 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHH
Q 007074 188 GRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEV 267 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a 267 (619)
.+.++|+++|+|+|+.....+..++.... ++.+..+. +..+......++ +++++|++|.||.|.||+.+++.+
T Consensus 289 ~~~~~I~~~G~GsS~~aa~~a~~~~~~~~-~i~~~~~~---~~~~~~~~~~~~---~~dlvI~iS~SG~T~e~v~a~~~a 361 (607)
T TIGR01135 289 KNVDRIQIVACGTSYHAGLVAKYLIERLA-GIPVEVEI---ASEFRYRKPVVD---KDTLVIAISQSGETADTLAALRLA 361 (607)
T ss_pred ccCCEEEEEEeechHHHHHHHHHHHHHhc-CCCEEEec---HHHHhhcCCCCC---CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 45688999999999876666666654432 23444332 222222222233 489999999999999999999999
Q ss_pred HHHHHHhccccCCEEEEEec-CCchhhhhHH
Q 007074 268 QKAFREAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 268 ~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
++. +.++|+||. ++|+|.+.|+
T Consensus 362 k~~--------ga~~IaIT~~~~S~La~~ad 384 (607)
T TIGR01135 362 KEL--------GAKTLGICNVPGSTLVRESD 384 (607)
T ss_pred HHc--------CCcEEEEECCCCChHHhhcC
Confidence 872 578999998 5799988874
No 45
>PRK13936 phosphoheptose isomerase; Provisional
Probab=97.70 E-value=0.00065 Score=67.55 Aligned_cols=108 Identities=22% Similarity=0.285 Sum_probs=69.8
Q ss_pred ceEEEEecccCchHHHHHHHHhc-CC---CCCceEEEEeCCChhHHH-------------HHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAEALA-PD---NPPLKIRFIDNTDPAGID-------------HQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~-~~---~~~~~i~FvdN~DP~~i~-------------~~l~~L~~~l~~TLvIViSK 253 (619)
..|.++|.|+|++-++-+..-|. +. +.+++...+ ..|+..+. +.+..... ++-++|++|.
T Consensus 44 ~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~a~~~~--~~Dv~i~iS~ 120 (197)
T PRK13936 44 GKILACGNGGSAADAQHFSAELLNRFERERPSLPAIAL-TTDTSTLTAIANDYSYNEVFSKQVRALGQ--PGDVLLAIST 120 (197)
T ss_pred CEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEec-CCcHHHHHHHhhcCCHHHHHHHHHHHhCC--CCCEEEEEeC
Confidence 57999999999876655544333 22 223343333 12322211 11122221 3788999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCC
Q 007074 254 SGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWV 311 (619)
Q Consensus 254 SGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~V 311 (619)
||.|.|++..++.+++. +.++|+||+ .+++|.+++....+ .+.+|..-
T Consensus 121 sG~t~~~~~~~~~ak~~--------g~~iI~IT~~~~s~l~~l~~~ad~--~l~v~~~~ 169 (197)
T PRK13936 121 SGNSANVIQAIQAAHER--------EMHVVALTGRDGGKMASLLLPEDV--EIRVPAER 169 (197)
T ss_pred CCCcHHHHHHHHHHHHC--------CCeEEEEECCCCChhhhhhccCCE--EEEeCCCc
Confidence 99999999999999873 788999998 46888887543343 67777643
No 46
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.70 E-value=0.00024 Score=59.81 Aligned_cols=80 Identities=24% Similarity=0.261 Sum_probs=60.4
Q ss_pred EEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHH-HHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQ-IAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~-l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
|+++|.|+|+.-.+.+...|.... ++++.++.. +...... +..++ ++.+++++|+||.|.|+...++.+++
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~-~~~~~~~~~--~~~~~~~~~~~~~---~~d~~i~iS~sg~t~~~~~~~~~a~~-- 72 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELT-GIEVVALIA--TELEHASLLSLLR---KGDVVIALSYSGRTEELLAALEIAKE-- 72 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhccc-CCceEEeCC--cHHHHHHHHhcCC---CCCEEEEEECCCCCHHHHHHHHHHHH--
Confidence 578999999999998888887652 256666543 2222222 45555 38999999999999999999999887
Q ss_pred HHhccccCCEEEEEe
Q 007074 272 REAGLEFAKQGVAIT 286 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT 286 (619)
.+.++|+||
T Consensus 73 ------~g~~ii~it 81 (87)
T cd04795 73 ------LGIPVIAIT 81 (87)
T ss_pred ------cCCeEEEEe
Confidence 267899999
No 47
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.68 E-value=0.0001 Score=85.42 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=68.4
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
++++|+++|.|+|+.....+...|..... .....+. .+..+.. ....+ +++++|++|.||.|.||+.+++.++
T Consensus 321 ~~~~I~i~g~GsS~~aa~~~~~~l~~~~~-~~~v~~~--~~s~~~~-~~~~~---~~~lvI~ISqSGeT~d~i~al~~ak 393 (640)
T PTZ00295 321 NIKNLILVGCGTSYYAALFAASIMQKLKC-FNTVQVI--DASELTL-YRLPD---EDAGVIFISQSGETLDVVRALNLAD 393 (640)
T ss_pred cCCEEEEEEeehHHHHHHHHHHHHHHhCC-CCceEEe--chHHhhh-hccCC---CCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 46889999999999999988887765432 2111122 2333221 12222 4899999999999999999999998
Q ss_pred HHHHHhccccCCEEEEEec-CCchhhhhHH
Q 007074 269 KAFREAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
+. +.++|+||. .+|+|.+.|.
T Consensus 394 ~~--------Ga~~IaITn~~~S~La~~ad 415 (640)
T PTZ00295 394 EL--------NLPKISVVNTVGSLIARSTD 415 (640)
T ss_pred HC--------CCCEEEEECCCCChhHHhcC
Confidence 72 578999998 5788888873
No 48
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.63 E-value=0.0007 Score=78.50 Aligned_cols=105 Identities=23% Similarity=0.161 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
+.++++++.|.+ .+.|.++|+|.|+.-.+.+..-|... ++++++. .|..........+++ +
T Consensus 456 ~~l~~aa~~L~~------------a~rI~i~G~G~S~~~A~~~~~~l~~l--g~~~~~~--~d~~~~~~~~~~l~~---~ 516 (638)
T PRK14101 456 EHVEQAIDILNN------------ARRIEFYGLGNSNIVAQDAHYKFFRF--GIPTIAY--GDLYMQAASAALLGK---G 516 (638)
T ss_pred HHHHHHHHHHhc------------CCEEEEEEccHHHHHHHHHHHHHhcC--CceEEEc--CCHHHHHHHHhcCCC---C
Confidence 566778888763 36799999999987777666655432 2344433 354444444555664 6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHH
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVR 297 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~ 297 (619)
.++|++|.||.|.|+...++.+++ .+.++|+||+..++|.+.|+
T Consensus 517 DvvI~iS~sG~t~e~i~~~~~Ak~--------~Ga~vIaIT~~~spLa~~aD 560 (638)
T PRK14101 517 DVIVAVSKSGRAPELLRVLDVAMQ--------AGAKVIAITSSNTPLAKRAT 560 (638)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH--------CCCeEEEEcCCCChhHhhCC
Confidence 899999999999999999999987 27899999997788777763
No 49
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=97.62 E-value=0.00011 Score=84.54 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=67.6
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
+.+.|+++|+|+|+.....+...+.... ++.+.+... ..+......++ +++++|++|.||+|.||+..++.++
T Consensus 288 ~a~~I~~~G~GsS~~aa~~a~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~---~~dlvI~iS~SG~T~e~i~a~~~ak 360 (604)
T PRK00331 288 KIDRIYIVACGTSYHAGLVAKYLIESLA-GIPVEVEIA---SEFRYRDPVLS---PKTLVIAISQSGETADTLAALRLAK 360 (604)
T ss_pred cCCEEEEEEeecHHHHHHHHHHHHHHHc-CCCEEEEeh---hhhhccCCCCC---CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999887777777665432 234443322 22221222233 4899999999999999999999998
Q ss_pred HHHHHhccccCCEEEEEec-CCchhhhhHH
Q 007074 269 KAFREAGLEFAKQGVAITQ-ENSLLDNTVR 297 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~ 297 (619)
+. +.++|+||. .+|+|.+.|+
T Consensus 361 ~~--------ga~~IaIT~~~~S~La~~aD 382 (604)
T PRK00331 361 EL--------GAKTLAICNVPGSTIARESD 382 (604)
T ss_pred HC--------CCCEEEEECCCCChhHHhcC
Confidence 72 678999998 4788888873
No 50
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.62 E-value=0.00033 Score=81.75 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=66.8
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
+.++|+++|.|+|+.....+..++..... +.+.... +..+......++ +++++|++|.||.|.||+.+++.++
T Consensus 353 ~a~rI~ivG~GtS~~aa~~ak~~~~kl~~-i~v~v~~---asef~~~~~~~~---~~dlvI~ISqSGeT~dtl~Al~~Ak 425 (670)
T PTZ00394 353 TSRRILFIACGTSLNSCLAVRPLFEELVP-LPISVEN---ASDFLDRRPRIQ---RDDVCFFVSQSGETADTLMALQLCK 425 (670)
T ss_pred CCCEEEEEEechHHHHHHHHHHHHHHhcC-CCEEEec---cchhhhhccCCC---CCCEEEEEECCcCcHHHHHHHHHHH
Confidence 45889999999999887776666654322 3333221 222222222233 4899999999999999999999998
Q ss_pred HHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 269 KAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
+. +.++|+||. .+|+|.+.|
T Consensus 426 ~~--------Ga~tIaITn~~~S~La~~A 446 (670)
T PTZ00394 426 EA--------GAMCVGITNVVGSSISRLT 446 (670)
T ss_pred HC--------CCcEEEEECCCCCHHHHhc
Confidence 72 578999998 478888887
No 51
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.42 E-value=0.00067 Score=69.46 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=65.4
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l 271 (619)
.|++.|.|+|+.-++-+..-|..- +.++.+++. ..........++ ++.++|++|.||.|.|++..++.|++.
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~~--~~~~~~~~~~~~---~~d~~i~iS~sG~t~~~~~~~~~a~~~- 73 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAST--GTPSFFLHP--TEAMHGDLGMVE---PNDVVLMISYSGESLELLNLIPHLKRL- 73 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhc--CCceEEeCH--hHHhhcccCCCC---CCCEEEEEeCCCCCHHHHHHHHHHHHc-
Confidence 489999999988777776666532 245555532 222222223454 378999999999999999999999873
Q ss_pred HHhccccCCEEEEEec-CCchhhhhH
Q 007074 272 REAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 272 ~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
+..+|+||+ ..++|.+.+
T Consensus 74 -------g~~ii~iT~~~~s~l~~~~ 92 (268)
T TIGR00393 74 -------SHKIIAFTGSPNSSLARAA 92 (268)
T ss_pred -------CCcEEEEECCCCCcccccC
Confidence 678999998 468887776
No 52
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=97.21 E-value=0.0033 Score=66.63 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 244 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 244 ~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
++.++|++|.||.|++++..++.+++ .+..+|+||. ++++|.+.+
T Consensus 131 ~~DvvI~IS~SG~T~~vi~al~~Ak~--------~Ga~tI~IT~~~~s~La~~a 176 (299)
T PRK05441 131 AKDVVVGIAASGRTPYVIGALEYARE--------RGALTIGISCNPGSPLSKEA 176 (299)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--------CCCeEEEEECCCCChhhHhC
Confidence 36789999999999999999999987 3788999998 478887766
No 53
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=97.14 E-value=0.0051 Score=63.82 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=60.7
Q ss_pred ceEEEEecccCchHH-HHHHHHhcCCCC---CceEEEE----------eC--CChhHHHHHHHhhCcCCCcEEEEEEcCC
Q 007074 191 TSILSVGIGGSALGP-QFVAEALAPDNP---PLKIRFI----------DN--TDPAGIDHQIAQLGPELASTLVVVISKS 254 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp-~~v~~aL~~~~~---~~~i~Fv----------dN--~DP~~i~~~l~~L~~~l~~TLvIViSKS 254 (619)
..|+++|.|+|+.-+ .-..+....+.. .+..++. .+ -|++.-.+.+...... ++.++|++|.|
T Consensus 50 grl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~-~~DvvI~IS~S 128 (257)
T cd05007 50 GRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLT-ERDVVIGIAAS 128 (257)
T ss_pred CEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCC-CCCEEEEEeCC
Confidence 469999999996543 333333322211 1122211 11 1233223333333211 47788999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhH
Q 007074 255 GGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTV 296 (619)
Q Consensus 255 GtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A 296 (619)
|.|++++..++.+++ .+..+|+||.+ +++|.+.+
T Consensus 129 G~T~~vi~al~~Ak~--------~Ga~~I~It~~~~s~L~~~a 163 (257)
T cd05007 129 GRTPYVLGALRYARA--------RGALTIGIACNPGSPLLQLA 163 (257)
T ss_pred CCCHHHHHHHHHHHH--------CCCeEEEEECCCCChhHHhC
Confidence 999999999999987 37889999984 68887776
No 54
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=97.08 E-value=0.003 Score=58.69 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcE
Q 007074 167 AVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAST 246 (619)
Q Consensus 167 ~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~T 246 (619)
+++++++.+. ..++|+++|.|+|+.-.+-...-|.... .++... -.+.+.++--...+++ ++
T Consensus 2 ~~~~~a~~~~------------~~~~i~~~G~G~s~~~a~e~~~kl~e~~-~i~~~~--~~~~e~~hg~~~~~~~---~~ 63 (153)
T cd05009 2 DIKELAEKLK------------EAKSFYVLGRGPNYGTALEGALKLKETS-YIHAEA--YSAGEFKHGPIALVDE---GT 63 (153)
T ss_pred hHHHHHHHHh------------ccCcEEEEcCCCCHHHHHHHHHHHHHHH-hhccee--ccHHHhccChhhhccC---CC
Confidence 4567777775 3688999999999877766555554321 122222 2234444444555664 89
Q ss_pred EEEEEcCCCCCHH-HHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCC
Q 007074 247 LVVVISKSGGTPE-TRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDW 310 (619)
Q Consensus 247 LvIViSKSGtT~E-Tl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~ 310 (619)
++|++|.||.|.| +...++.+++ .+.++++||+++.. .+.+ + ..+.+|.-
T Consensus 64 ~vi~is~~g~t~~~~~~~~~~~~~--------~~~~vi~it~~~~s-~~~~---d--~~i~~~~~ 114 (153)
T cd05009 64 PVIFLAPEDRLEEKLESLIKEVKA--------RGAKVIVITDDGDA-KDLA---D--VVIRVPAT 114 (153)
T ss_pred cEEEEecCChhHHHHHHHHHHHHH--------cCCEEEEEecCCcc-cccC---C--eEEECCCC
Confidence 9999999998766 5556665554 36889999985322 2222 2 46677764
No 55
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=97.07 E-value=0.0068 Score=64.25 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhH
Q 007074 244 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTV 296 (619)
Q Consensus 244 ~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A 296 (619)
++.++|++|.||.|++++..++.+++. +..+|+||.+ +++|.+.+
T Consensus 127 ~~DvvI~IS~SG~T~~vi~al~~Ak~~--------Ga~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 127 ADDVVVGIAASGRTPYVIGALEYAKQI--------GATTIALSCNPDSPIAKIA 172 (296)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC--------CCeEEEEECCCCChhHHhC
Confidence 478899999999999999999999873 6889999984 68887766
No 56
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=96.88 E-value=0.0068 Score=64.14 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhH
Q 007074 244 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTV 296 (619)
Q Consensus 244 ~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A 296 (619)
++-++|++|.||.|+++...++.+++. +.++|+||. ++++|.+.+
T Consensus 126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~--------Ga~tIaIT~~~~s~La~~a 171 (291)
T TIGR00274 126 KNDVVVGIAASGRTPYVIAGLQYARSL--------GALTISIACNPKSAASEIA 171 (291)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHC--------CCeEEEEECCCCChhHHhC
Confidence 378899999999999999999999873 788999998 467887776
No 57
>PRK02947 hypothetical protein; Provisional
Probab=96.88 E-value=0.0053 Score=63.23 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCC------------chhhhhHH
Q 007074 244 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQEN------------SLLDNTVR 297 (619)
Q Consensus 244 ~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~------------s~L~~~A~ 297 (619)
++-++|++|.||.|.|++..++.+++. +..+|+||+.. ++|.+.|+
T Consensus 106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~--------g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad 163 (246)
T PRK02947 106 PGDVLIVVSNSGRNPVPIEMALEAKER--------GAKVIAVTSLAYSASVASRHSSGKRLAEVAD 163 (246)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC--------CCEEEEEcCCcccccccccCCCcCchhHhCC
Confidence 378999999999999999999998872 78899999853 67877763
No 58
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.011 Score=67.87 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=88.0
Q ss_pred CCcceEEEEecccCchHHHHHHHHhcCCCCCceEEE--EeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHH
Q 007074 188 GRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRF--IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~F--vdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~ 265 (619)
..+++|.+++.|-|+-+......++..... +++.. .+.. ..--..+. ++||||.||.||.|.-|+.+++
T Consensus 281 ~~~~rI~IvAcGTSYhAglv~ky~~E~la~-ipv~Ve~aSEf-----ry~~~~~~---~~~L~I~ISQSGETaDTl~ALr 351 (597)
T COG0449 281 REVDRIIIVACGTSYHAGLVAKYFFERLAK-IPVEVEEASEF-----RYREPALN---PNTLVIAISQSGETADTLAALR 351 (597)
T ss_pred cccceEEEEECcHHHHHHHHHHHHHHHHhC-CCeEEEeechh-----hhhccCCC---CCcEEEEEccCcccHHHHHHHH
Confidence 468999999999999988888777765432 33333 2321 11111133 3799999999999999999999
Q ss_pred HHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccC--CCCC----cchh-hhHhhHHHHHh---cCC---
Q 007074 266 EVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFD--WVGG----RTSE-MSAVGLLPAAL---QGI--- 331 (619)
Q Consensus 266 ~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd--~VGG----RfSv-lSaVGLlPaal---~Gi--- 331 (619)
.+++. +.+.++||. .+|.+.+.+ .+ ++.+.. .+|. =|+. +.+.-++-+.+ .|.
T Consensus 352 ~ak~~--------G~~tlaItNv~gSti~Res---d~--~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~ 418 (597)
T COG0449 352 LAKEQ--------GAKTLAITNVPGSTIARES---DH--TLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISE 418 (597)
T ss_pred HHHHc--------CCCEEEEEecCCChhhccc---ce--EEEeccCCceeeecchhHHHHHHHHHHHHHHHhHhhCccch
Confidence 99872 578999997 688776665 33 455543 2332 1222 22222222222 242
Q ss_pred -CHHHHHHHHHHHhHHhc
Q 007074 332 -DVREMLAGASLMDEANR 348 (619)
Q Consensus 332 -Di~~lL~GA~~md~~~~ 348 (619)
+.+++.++-+.+.++..
T Consensus 419 ~~~~~~~~~L~~lp~~i~ 436 (597)
T COG0449 419 EEERSLIKELQKLPNHIP 436 (597)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 36777777777766554
No 59
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=95.41 E-value=0.085 Score=49.42 Aligned_cols=86 Identities=24% Similarity=0.286 Sum_probs=51.6
Q ss_pred ceEEEEecccCchH-HHHHHHHhcCCC-CC--ceEEEE-eC----------CChhHHHHHHHh--hCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALG-PQFVAEALAPDN-PP--LKIRFI-DN----------TDPAGIDHQIAQ--LGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LG-p~~v~~aL~~~~-~~--~~i~Fv-dN----------~DP~~i~~~l~~--L~~~l~~TLvIViSK 253 (619)
..|+++|-|||..- -.++.++..... .+ .+..-+ ++ .|+..-..+++. +.| .=++|++|-
T Consensus 36 g~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gDvli~iS~ 112 (138)
T PF13580_consen 36 GRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRP---GDVLIVISN 112 (138)
T ss_dssp --EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--T---T-EEEEEES
T ss_pred CEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCC---CCEEEEECC
Confidence 35999999999754 455566554321 11 222222 21 123344555555 443 567888999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec
Q 007074 254 SGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ 287 (619)
Q Consensus 254 SGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~ 287 (619)
||+|+=++.+++++|+. +-.+|++|+
T Consensus 113 SG~s~~vi~a~~~Ak~~--------G~~vIalTg 138 (138)
T PF13580_consen 113 SGNSPNVIEAAEEAKER--------GMKVIALTG 138 (138)
T ss_dssp SS-SHHHHHHHHHHHHT--------T-EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHC--------CCEEEEEeC
Confidence 99999999999999873 778999984
No 60
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=94.20 E-value=1 Score=44.23 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=71.6
Q ss_pred ceEEEEecccCchHHHHHHH-HhcCC---CCCceEEEEeCCChh-------------HHHHHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAE-ALAPD---NPPLKIRFIDNTDPA-------------GIDHQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~-aL~~~---~~~~~i~FvdN~DP~-------------~i~~~l~~L~~~l~~TLvIViSK 253 (619)
..|+++|-|||+--++-... .+..+ ++.++-.-+. +|+. -+.+.++-+.. +--+++-+|-
T Consensus 42 ~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt-~dsS~lTai~NDy~yd~vFsRqveA~g~--~GDvLigIST 118 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALS-TDSSVLTAIANDYGYDEVFSRQVEALGQ--PGDVLIGIST 118 (176)
T ss_pred CEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEee-cccHHHhhhhccccHHHHHHHHHHhcCC--CCCEEEEEeC
Confidence 46999999999987765544 33332 3333333332 2222 23455555553 2557889999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCCCCc
Q 007074 254 SGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWVGGR 314 (619)
Q Consensus 254 SGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~VGGR 314 (619)
||+..-.+.+++.|++. +-++|+.|. +|+++..++ .+ -+.+|...-.|
T Consensus 119 SGNS~nVl~Ai~~Ak~~--------gm~vI~ltG~~GG~~~~~~---D~--~i~VPs~~t~R 167 (176)
T COG0279 119 SGNSKNVLKAIEAAKEK--------GMTVIALTGKDGGKLAGLL---DV--EIRVPSTDTAR 167 (176)
T ss_pred CCCCHHHHHHHHHHHHc--------CCEEEEEecCCCccccccc---ce--EEecCCCcchh
Confidence 99999999999888873 788999998 478888888 33 36677653333
No 61
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=94.08 E-value=0.87 Score=53.23 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCC
Q 007074 165 LDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELA 244 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~ 244 (619)
.+.++++++.+.+ .++++++|.|.++.-++-..--|..-. .+|-..-.+.+..+--+..++++ +
T Consensus 483 ~~~~~~~a~~l~~------------a~~i~~lGrG~~~~iA~E~ALKLkEi~---~i~ae~~~~~E~~HGp~ali~~~-~ 546 (640)
T PTZ00295 483 EEQCKRIAEKLKN------------AKSMFILGKGLGYPIALEGALKIKEIT---YIHAEGFSGGALKHGPFALIDKE-K 546 (640)
T ss_pred HHHHHHHHHHHhC------------CCcEEEEECCCCHHHHHHHHHHHHHHh---hhhhhhcChHHhhhhHHHHhcCC-C
Confidence 3567778887752 478999999988633322211121110 11211122244444455556532 2
Q ss_pred cEEEEEEcCCCC-CHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchh
Q 007074 245 STLVVVISKSGG-TPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSE 317 (619)
Q Consensus 245 ~TLvIViSKSGt-T~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSv 317 (619)
++.||++|-+|. +.+++.+++.++++ +.++++||++++.+.+.+ . .++.+|.. ..++.
T Consensus 547 ~~~VI~i~~~~~~~~~~~~~~~~lk~r--------ga~vi~It~~~~~l~~~a---d--~~i~ip~~--~~l~p 605 (640)
T PTZ00295 547 NTPVILIILDDEHKELMINAAEQVKAR--------GAYIIVITDDEDLVKDFA---D--EIILIPSN--GPLTA 605 (640)
T ss_pred CCeEEEEEcCCccHHHHHHHHHHHHHc--------CCEEEEEecCCccccccC---C--eEEEeCCc--ccchH
Confidence 677877777777 67788888777763 789999998643333322 2 36778762 45544
No 62
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=85.50 E-value=2.7 Score=45.88 Aligned_cols=199 Identities=18% Similarity=0.214 Sum_probs=111.5
Q ss_pred hHHHHHHHHhcCCCCCceEEE-EeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCE
Q 007074 203 LGPQFVAEALAPDNPPLKIRF-IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQ 281 (619)
Q Consensus 203 LGp~~v~~aL~~~~~~~~i~F-vdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h 281 (619)
+....+.+.+.. +-+.+ +-|=+..-++-+|..+. .+.+|||+|-| +-|....|+.=++.++.......+.
T Consensus 41 i~~~~l~~i~~~----mAIVVP~KdE~l~lleGVL~gIP---h~c~iIvVSNS--~r~~~d~f~~E~dlv~~f~~~t~r~ 111 (393)
T PRK14503 41 VPREDLYDILGR----MAIVVPVKNERLKLLEGVLKGIP---HECPIIVVSNS--KREPPDRFKLEVDLVRHFYRLTQRP 111 (393)
T ss_pred CCHHHHHHHHhC----cEEEEEcCCCchhHHhhHhhcCC---CCCeEEEEeCC--CCCCchHHHHHHHHHHHHHhhhcCc
Confidence 345557777653 23332 35556778888999886 38999999999 5556777877666665542223477
Q ss_pred EEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcCC------CHHHHHHHHH-HHhHHhcCC-CcC
Q 007074 282 GVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGI------DVREMLAGAS-LMDEANRTT-VLR 353 (619)
Q Consensus 282 ~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~Gi------Di~~lL~GA~-~md~~~~~~-~l~ 353 (619)
+++|-.++-.|.+.=++.||..++.-..-|---=..---+|++.|...|- |-+...-||- +-.+.|... .+.
T Consensus 112 ~i~vHQkDp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGaV~EYvk~yAAGf~ma 191 (393)
T PRK14503 112 IIIVHQKDPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGAVNEYVKIYAAGFLMA 191 (393)
T ss_pred eEEEEcCCHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCchHHHHHHHHHhhhccc
Confidence 88888765556555556676333332221211123445578887777664 4455555552 222333211 111
Q ss_pred CCHHHHHHHHH-HHHhcCCCCceEEEEe-chhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCC
Q 007074 354 NNPAALLALCW-YWASDGVGSKDMVVLP-YKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKG 422 (619)
Q Consensus 354 ~N~a~llAl~~-~~~~~~~g~~~~vllp-Y~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~G 422 (619)
+.| +++.+ .|.++-+=..+.+.+. +.--=+...+|+.+|+.|-.|-. |.++..||.|
T Consensus 192 ~sp---ytMVRi~W~~KPKv~~~~lyF~k~GRvSel~nr~LN~l~~~~~gf~---------t~li~TGNAG 250 (393)
T PRK14503 192 ESP---YTMVRIHWRYKPKVTEDRLYFRKWGRVSEITNRYLNQLISEYTGFE---------TDIIKTGNAG 250 (393)
T ss_pred CCC---CceEEEEecCCCceecCeEEEecCcchhHHHHHHHHHHHhhhcccc---------ccceecCCch
Confidence 222 23332 3433322223333333 22222445689999999999976 4566666655
No 63
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=81.30 E-value=4 Score=46.57 Aligned_cols=186 Identities=19% Similarity=0.172 Sum_probs=102.7
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
+.+.++.||.|-||-..-|....|..-. .+++.+ .+-.+. +++-.|=-.+-.++.+|.||.|..|+.++++++
T Consensus 354 r~rRli~iacgtSyhs~~A~R~ilEEL~-eiPV~v--ElAsDf----lDR~~pifRdDvc~FvSqSGETaDtllaL~Yc~ 426 (670)
T KOG1268|consen 354 RCRRLIMVACGTSYHSALATRPILEELS-EIPVSV--ELASDF----LDRNTPIFRDDVCFFVSQSGETADTLLALRYCK 426 (670)
T ss_pred hccccEEEEecchHHHHHHHHHHHHHHh-cCCeee--ehhhhh----HhcCCCceeccEEEEEecCCchHHHHHHHHHHH
Confidence 3567999999999877666655554322 234433 222222 222222223556788999999999999999998
Q ss_pred HHHHHhccccCCEEEEEec-CCchhhhhHHHhCCcceeeccCCCCC-----cchhhhHhhHHHHHh-cCCC-H------H
Q 007074 269 KAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDWVGG-----RTSEMSAVGLLPAAL-QGID-V------R 334 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~VGG-----RfSvlSaVGLlPaal-~GiD-i------~ 334 (619)
+. ++-.|.||. -||. ++++-.+.-.+.-=+.+|= =+|-+ |.|+-.|| ++-| + +
T Consensus 427 ~~--------gAl~vGvtNtvGSs---IsR~thCGvHiNaGpEigvAsTKaYTSQ~--i~lvm~aL~~s~d~is~~~RR~ 493 (670)
T KOG1268|consen 427 ER--------GALTVGVTNTVGSS---ISRETHCGVHINAGPEIGVASTKAYTSQY--IALVMFALWMSEDRVSKQERRK 493 (670)
T ss_pred hc--------CceEEEeecccCcc---cccccccceeccCCCccceeechHHHHHH--HHHHHHHHHhccchhhHHHHHH
Confidence 73 777899996 4663 4444333222333333441 12333 34444444 3544 3 5
Q ss_pred HHHHHHHHHhHHhcCCCcCCCHHH-HHHHHHHHHhcCCCCceEEEEe----chhchHhHHHHHHHHHHhhcC
Q 007074 335 EMLAGASLMDEANRTTVLRNNPAA-LLALCWYWASDGVGSKDMVVLP----YKDSLLLFSRYLQQLVMESLG 401 (619)
Q Consensus 335 ~lL~GA~~md~~~~~~~l~~N~a~-llAl~~~~~~~~~g~~~~vllp----Y~~~L~~f~~wlqQL~mESlG 401 (619)
++++|-+...+..++ -++-|+.+ .+|. -.+ ..+...+|- |...|+.=.+-=+=-.|-|.|
T Consensus 494 eIi~gL~~l~~~ike-vL~l~~~i~~la~--~l~----~~~slLi~GRGy~~at~lEGAlKiKEisymHsEg 558 (670)
T KOG1268|consen 494 EIIDGLKDLPSQIKE-VLELDPKIKDLAK--ELK----DHKSLLIMGRGYNFATALEGALKIKEISYMHSEG 558 (670)
T ss_pred HHHHHHHHHHHHHHH-HHhccHHHHHHHH--HHh----ccceEEEecccccHHHHhhhhhhhheeeehhhch
Confidence 788898888877664 23344444 3443 222 234445543 444444433332333455555
No 64
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=78.16 E-value=6.4 Score=29.90 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
.+.+|+.+|.+.. ..|..|||+++|. ...+|.++|+-|...
T Consensus 4 ~~~~Il~~l~~~~------~~t~~ela~~~~i--s~~tv~~~l~~L~~~ 44 (48)
T PF13412_consen 4 TQRKILNYLRENP------RITQKELAEKLGI--SRSTVNRYLKKLEEK 44 (48)
T ss_dssp HHHHHHHHHHHCT------TS-HHHHHHHHTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC------CCCHHHHHHHhCC--CHHHHHHHHHHHHHC
Confidence 4678999999864 6999999999998 788999999998765
No 65
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=77.46 E-value=5.3 Score=35.38 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCce
Q 007074 537 EVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRAL 593 (619)
Q Consensus 537 ~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (619)
.+=.++++|+++|+. . ....+.+++.+|+++++. ..+.|-++|++|+.+..=|
T Consensus 44 ~~~~~~~~Vl~~i~~-~-~~~~~Gv~v~~I~~~l~~--~~~~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 44 GLSPLQDKVLNFIKQ-Q-PNSEEGVHVDEIAQQLGM--SENEVRKALDFLSNEGHIY 96 (102)
T ss_dssp -S-HHHHHHHHHHHC------TTTEEHHHHHHHSTS---HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHh-c-CCCCCcccHHHHHHHhCc--CHHHHHHHHHHHHhCCeEe
Confidence 345678899999988 2 234568999999999977 5789999999999986644
No 66
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=76.06 E-value=4.2 Score=32.34 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=32.0
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcC-C-CchhhHHHHHHHHHh
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCH-T-PEDIEMIYKIIAHMA 587 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 587 (619)
.|++.+.+.. +.++|++|||.++. . |+..+.+..|+|-|+
T Consensus 10 gI~dii~~~g----~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 10 GIPDIIHNAG----GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp THHHHHHHHT----TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcC----CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5777887753 37999999999998 3 578899999999885
No 67
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=72.92 E-value=11 Score=29.27 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEeec
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAEG 597 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (619)
+.+|+.+|.+.. .++|+++||+.++. +.-+|++-+.-|.... +.++.
T Consensus 2 ~~~il~~L~~~~-----~~it~~eLa~~l~v--S~rTi~~~i~~L~~~~--~~I~~ 48 (55)
T PF08279_consen 2 QKQILKLLLESK-----EPITAKELAEELGV--SRRTIRRDIKELREWG--IPIES 48 (55)
T ss_dssp HHHHHHHHHHTT-----TSBEHHHHHHHCTS---HHHHHHHHHHHHHTT---EEEE
T ss_pred HHHHHHHHHHcC-----CCcCHHHHHHHhCC--CHHHHHHHHHHHHHCC--CeEEe
Confidence 567888886644 46999999999998 7789999999886654 44443
No 68
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=71.85 E-value=31 Score=42.62 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=84.7
Q ss_pred CCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeeccC
Q 007074 371 VGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRD 450 (619)
Q Consensus 371 ~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~ 450 (619)
......+++.|-++....-.++|.+-..---+ +|..+.-+.|+.=.||-+|++..||++=. |+.+-.+
T Consensus 820 ~~~~y~a~~ay~~~~~~~~~~~~~~r~~~~~~----------~~~~~~~~~gPrflhstgq~~kggp~~Gv--flqit~~ 887 (948)
T PRK09533 820 KAGDYVALLAYIERNPAHIAALQAIRLAVRDA----------RKVATCLEFGPRFLHSTGQAYKGGPDSGV--FLQITAD 887 (948)
T ss_pred CCCCeEEEEEecCCccchHHHHHHHHHHHHHh----------cCCCeeeeecCccccccCccccCCCCCce--EEEEecC
Confidence 34556788999999877667777775443322 34555666789999999999999998753 4544322
Q ss_pred CCCCCccccCC-CCChHHHHHHhhccchhhcccCCcceeEEEec-cCChhhHHHHHH
Q 007074 451 RPPGHDWELEP-GVTCGDYLFGMLQGTRSALYANDRESVTVTVQ-EVTPRSVGALVA 505 (619)
Q Consensus 451 ~~~~~~~~l~~-g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~-~l~~~~LGaLia 505 (619)
+..|+.++. ..+.+.+..+...|...+|.+.|||...+.+. ++..- |.+|..
T Consensus 888 --~~~dl~vpg~~~~f~~l~~aqa~gd~~~L~~~~r~~lr~hl~~~~~~g-~~~l~~ 941 (948)
T PRK09533 888 --DAADLPVPGQKYSFGVVKAAQARGDFDVLTERGRRALRVHLKGDLKSG-LKALAA 941 (948)
T ss_pred --ccccCCCCCCCCCHHHHHHHHHccCHHHHHhcCCceEEEEecCchhhH-HHHHHH
Confidence 134555552 34667888888899999999999999999997 44333 555543
No 69
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=71.55 E-value=13 Score=40.68 Aligned_cols=200 Identities=17% Similarity=0.207 Sum_probs=106.4
Q ss_pred chHHHHHHHHhcCCCCCceEEE-EeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCC
Q 007074 202 ALGPQFVAEALAPDNPPLKIRF-IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAK 280 (619)
Q Consensus 202 ~LGp~~v~~aL~~~~~~~~i~F-vdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~ 280 (619)
++....+.+.+.. +-+.+ +-|=+..-++-+|..+. .++++||+|-|-. |....|+.=++.++.......+
T Consensus 39 ~i~~~~l~~i~~~----maIVVP~KdE~l~lleGVL~gIP---h~c~iIvVSNS~r--~~~d~f~~E~d~~~~f~~~t~r 109 (381)
T TIGR02460 39 NIDREELYDLLGK----TAIVVPVKNEKLHLLEGVLSGIP---HECPIIIVSNSKR--EPPDRFKMEVDLIRHFSNLTHR 109 (381)
T ss_pred cCCHHHHHHHHhC----cEEEEEcCCCchhHHhhHhhcCC---CCCeEEEEeCCCC--CChhHHHHHHHHHHHHHHhhcC
Confidence 3455556666653 23332 35556778888899886 3899999999864 4466777666655543222357
Q ss_pred EEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcCC------CHHHHHHHHH-HHhHHhcCC-Cc
Q 007074 281 QGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGI------DVREMLAGAS-LMDEANRTT-VL 352 (619)
Q Consensus 281 h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~Gi------Di~~lL~GA~-~md~~~~~~-~l 352 (619)
.+++|-.++-.|.+.=++.||..++.-..-|---=..---+|++.|...|- |-+...-||- +-.+.|... ..
T Consensus 110 ~~i~vHQkDp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGaV~EYvk~yAaGf~m 189 (381)
T TIGR02460 110 KIIIIHQKDPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGAVNEYVKIYAAGFLM 189 (381)
T ss_pred ceEEEEcCCHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCchHHHHHHHHHhhhcc
Confidence 788888765555555555576333321111211123345578877777664 4455555552 222222211 01
Q ss_pred CCCHHHHHHHHH-HHHhcCCCCceEEEEe-chhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCC
Q 007074 353 RNNPAALLALCW-YWASDGVGSKDMVVLP-YKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKG 422 (619)
Q Consensus 353 ~~N~a~llAl~~-~~~~~~~g~~~~vllp-Y~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~G 422 (619)
.+.| +++.+ .|.++-+=....+.+. +.--=+...+|+.+||.|-.|-. |.++..|+.|
T Consensus 190 a~sp---y~MVRi~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfe---------t~ii~TGnAG 249 (381)
T TIGR02460 190 ATSP---YSMVRIHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFE---------TDIIKTGNAG 249 (381)
T ss_pred cCCC---CeeEEEEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHhhcccc---------Ccceecccch
Confidence 1111 22222 2332222222223332 22222355689999999988876 4455555555
No 70
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=70.06 E-value=55 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ 287 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~ 287 (619)
+-+++|+|-||..+=++..++++|+. +..+|+||+
T Consensus 105 ~DVliviSnSGrNpvpie~A~~~rek--------Ga~vI~vTS 139 (243)
T COG4821 105 NDVLIVISNSGRNPVPIEVAEYAREK--------GAKVIAVTS 139 (243)
T ss_pred CCEEEEEeCCCCCCcchHHHHHHHhc--------CCeEEEEeh
Confidence 66889999999999999999999873 788999997
No 71
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=68.98 E-value=6 Score=30.80 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=31.6
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
+|+++|.+.. .++|+.|||+++|.| .-++|.+|.-|...
T Consensus 7 ~iL~~l~~~~-----~~~t~~eia~~~gl~--~stv~r~L~tL~~~ 45 (52)
T PF09339_consen 7 RILEALAESG-----GPLTLSEIARALGLP--KSTVHRLLQTLVEE 45 (52)
T ss_dssp HHHHCHHCTB-----SCEEHHHHHHHHTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-----CCCCHHHHHHHHCcC--HHHHHHHHHHHHHC
Confidence 5777777765 578999999999994 45899999999875
No 72
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=68.93 E-value=21 Score=26.64 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
++.|+..|.+. .++|+.+||+.++. ...++++.|..|..++
T Consensus 2 ~~~il~~l~~~------~~~s~~~l~~~l~~--s~~tv~~~l~~L~~~g 42 (53)
T smart00420 2 QQQILELLAQQ------GKVSVEELAELLGV--SEMTIRRDLNKLEEQG 42 (53)
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHCC--CHHHHHHHHHHHHHCC
Confidence 45677777664 36999999999998 7889999999998874
No 73
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.89 E-value=93 Score=28.38 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=46.8
Q ss_pred CchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcc
Q 007074 201 SALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGL 276 (619)
Q Consensus 201 S~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~ 276 (619)
-.+|-.++..+|+.. +.+++++ .++.++.+.+...+.+|+ +|++|-+- ..+...++...+.+++.+.
T Consensus 12 H~lG~~~~~~~l~~~--G~~vi~lG~~vp~e~~~~~a~~~~~d-----~V~iS~~~--~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 12 HDRGAKVIARALRDA--GFEVIYTGLRQTPEEIVEAAIQEDVD-----VIGLSSLS--GGHMTLFPEVIELLRELGA 79 (122)
T ss_pred hHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC-----EEEEcccc--hhhHHHHHHHHHHHHhcCC
Confidence 368999999998764 4688888 568888888888888764 55555443 3344456666676777654
No 74
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=64.38 E-value=10 Score=28.84 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHH
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIA 584 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (619)
.+|..++.+ ..|+.+||+.+|. ...+||.+|+
T Consensus 12 ~~i~~l~~~--------G~si~~IA~~~gv--sr~TvyR~l~ 43 (45)
T PF02796_consen 12 EEIKELYAE--------GMSIAEIAKQFGV--SRSTVYRYLN 43 (45)
T ss_dssp HHHHHHHHT--------T--HHHHHHHTTS---HHHHHHHHC
T ss_pred HHHHHHHHC--------CCCHHHHHHHHCc--CHHHHHHHHh
Confidence 567777765 3899999999999 7779999874
No 75
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=63.67 E-value=1e+02 Score=32.86 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=38.6
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC-CchhhhhH
Q 007074 244 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE-NSLLDNTV 296 (619)
Q Consensus 244 ~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~-~s~L~~~A 296 (619)
.+-+||-|+-||+|+=.+-+++++++ .+.+.|+++.| ++++.+.|
T Consensus 129 ~~DvvvgIaASGrTPYvigal~yAr~--------~Ga~Ti~iacNp~s~i~~~A 174 (298)
T COG2103 129 AKDVVVGIAASGRTPYVIGALEYARQ--------RGATTIGIACNPGSAISRIA 174 (298)
T ss_pred cCCEEEEEecCCCCchhhHHHHHHHh--------cCCeEEEeecCCCchhhhhc
Confidence 36688999999999999999999998 38999999984 78777776
No 76
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=63.49 E-value=14 Score=32.89 Aligned_cols=44 Identities=27% Similarity=0.520 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
....+|+++|.+.. +|+|+++|.+.++. +.--.||.-|+|+|--
T Consensus 3 t~rEkii~lL~e~~-----eplt~~ei~~~~~~-~~~~~v~~~L~hiak~ 46 (97)
T COG3357 3 TTREKIISLLLESD-----EPLTVAEIFELLNG-EKEKEVYDHLEHIAKS 46 (97)
T ss_pred hHHHHHHHHHHcCC-----CcchHHHHHHHHcC-CchHHHHHHHHHHHHH
Confidence 35678999998854 79999999999998 4556688889998853
No 77
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=63.37 E-value=14 Score=30.50 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCC
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDR 591 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (619)
++|+++|++.. .|+|..|||+++|. +.-++..+|.+|..-+.
T Consensus 3 e~Il~~i~~~~-----~p~~T~eiA~~~gl--s~~~aR~yL~~Le~eG~ 44 (62)
T PF04703_consen 3 EKILEYIKEQN-----GPLKTREIADALGL--SIYQARYYLEKLEKEGK 44 (62)
T ss_dssp HCHHHHHHHHT-----S-EEHHHHHHHHTS---HHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHcC-----CCCCHHHHHHHhCC--CHHHHHHHHHHHHHCCC
Confidence 46788888832 59999999999998 78888999999998654
No 78
>PRK09954 putative kinase; Provisional
Probab=62.31 E-value=17 Score=39.04 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC----CceEeecCCCCCcceeEEcccccccc
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND----RALIAEGSCGSPRSIKVYLGECNVDG 616 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (619)
..++|+..|++.. ..|..|||+.+|. ...+|.+.|+.|-..+ .|+.+ +|..-.+..|.||||-
T Consensus 4 ~~~~il~~l~~~~------~~s~~~la~~l~~--s~~~v~~~i~~L~~~g~i~~~~~~l-----~~~~~v~viG~~~vD~ 70 (362)
T PRK09954 4 REKEILAILRRNP------LIQQNEIADILQI--SRSRVAAHIMDLMRKGRIKGKGYIL-----TEQEYCVVVGAINMDI 70 (362)
T ss_pred HHHHHHHHHHHCC------CCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCcCCcEEEE-----cCCccEEEEEEEEEEE
Confidence 3457889998863 8999999999998 7789999999999865 34444 3445666799999986
Q ss_pred c
Q 007074 617 L 617 (619)
Q Consensus 617 ~ 617 (619)
.
T Consensus 71 ~ 71 (362)
T PRK09954 71 R 71 (362)
T ss_pred E
Confidence 4
No 79
>PHA02943 hypothetical protein; Provisional
Probab=61.88 E-value=28 Score=34.02 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 533 KAAGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 533 ~~a~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+.+..+++..++|+++|+.+ ..|..|||+++|. +.++++++|.-|...+
T Consensus 4 ~~sd~v~~R~~eILE~Lk~G-------~~TtseIAkaLGl--S~~qa~~~LyvLErEG 52 (165)
T PHA02943 4 GMSDTVHTRMIKTLRLLADG-------CKTTSRIANKLGV--SHSMARNALYQLAKEG 52 (165)
T ss_pred chhHHHHHHHHHHHHHHhcC-------CccHHHHHHHHCC--CHHHHHHHHHHHHHcC
Confidence 34678899999999999442 6789999999999 7788899999998875
No 80
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=61.51 E-value=21 Score=29.61 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
...+|+.+|++.. +..+|+.|||+++|.+. .+|.++|..|...+
T Consensus 7 ~~~~IL~~L~~~g----~~~~ta~eLa~~lgl~~--~~v~r~L~~L~~~G 50 (68)
T smart00550 7 LEEKILEFLENSG----DETSTALQLAKNLGLPK--KEVNRVLYSLEKKG 50 (68)
T ss_pred HHHHHHHHHHHCC----CCCcCHHHHHHHHCCCH--HHHHHHHHHHHHCC
Confidence 3568899998853 12499999999999943 48999999988753
No 81
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=60.35 E-value=36 Score=40.55 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCCCCceEEE-EeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEE
Q 007074 205 PQFVAEALAPDNPPLKIRF-IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGV 283 (619)
Q Consensus 205 p~~v~~aL~~~~~~~~i~F-vdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~V 283 (619)
-..+.+.+.. +-|.+ +-|=+..-++-+|..+. .+.+|||+|-|-.. ....|+.=++.+........+.++
T Consensus 47 ~~~l~~~~~~----~aivvp~k~e~~~~~~gvl~~ip---~~c~ii~vsns~r~--~~d~~~~e~~~~~~~~~~~~~~~~ 117 (694)
T PRK14502 47 QQAISDVEKK----MAIVLPIKDEDLKVFEGVLSGIP---HDCLMIVISNSSKQ--EVDNFKNEKDIVNRFCRITHRQAI 117 (694)
T ss_pred HHHHHHHHhC----cEEEEEcCCCchhHHhhHhhcCC---CCCeEEEEeCCCCC--chHHHHHHHHHHHHHHHhhcCceE
Confidence 3445555542 22332 34556778888899886 38999999998664 566677666665543222347788
Q ss_pred EEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcCC------CHHHHHHHHH-HHhHHhcCC-CcCCC
Q 007074 284 AITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGI------DVREMLAGAS-LMDEANRTT-VLRNN 355 (619)
Q Consensus 284 aVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~Gi------Di~~lL~GA~-~md~~~~~~-~l~~N 355 (619)
+|-.++-.|.+.=++.||..++.-..-|---=+.---+|++.|.+.|- |-+...-||- +-.++|... ...+.
T Consensus 118 ~vhq~dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~v~ey~~~yaag~~~~~~ 197 (694)
T PRK14502 118 VVHQKNPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVWEYAKHFATGFNLAQS 197 (694)
T ss_pred EEEcCCHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCchHHHHHHHHHhhhcccCC
Confidence 888765555555555676333322111211134455678887877774 3355555552 233333221 11122
Q ss_pred HHHHHHHHH-HHHhcCCCCceEEEEe-chhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCC
Q 007074 356 PAALLALCW-YWASDGVGSKDMVVLP-YKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKG 422 (619)
Q Consensus 356 ~a~llAl~~-~~~~~~~g~~~~vllp-Y~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~G 422 (619)
| +++.+ .|.++-+=. ..+.+. +.--=+--.+|+.+|+..-.|.+ +.++..|+.|
T Consensus 198 ~---~~mvri~w~~kpk~~-~~~~f~k~gr~s~~~n~~ln~l~s~~~~~e---------t~~i~tgnag 253 (694)
T PRK14502 198 P---YSMVRILWKYKPKLV-GDLYFKRWGRVSEVTNKHLNHLISSKGKFE---------TEIIKTGNAG 253 (694)
T ss_pred C---CeeEEEEecCCCccc-ceeEEeeccchhHHHHHHHHHHHHhccccc---------cceEEccCch
Confidence 2 23332 333222111 222222 22222345689999999999986 4566666666
No 82
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=60.21 E-value=13 Score=30.23 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+...+|+..|-+. .+.|+++||+.+|. .--+||.+|+.|...+
T Consensus 8 ~~E~~vy~~Ll~~------~~~t~~eIa~~l~i--~~~~v~~~L~~L~~~G 50 (68)
T PF01978_consen 8 ENEAKVYLALLKN------GPATAEEIAEELGI--SRSTVYRALKSLEEKG 50 (68)
T ss_dssp HHHHHHHHHHHHH------CHEEHHHHHHHHTS--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc------CCCCHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 3455777766544 48999999999999 5668999999999764
No 83
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.39 E-value=1.6e+02 Score=27.82 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=63.9
Q ss_pred eEEEEeccc--CchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 192 SILSVGIGG--SALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 192 ~VVvIGIGG--S~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
.||+.-+|| -.+|-.++..+|+.. +.+++++ .++.++.+.+...+.+++ +|.+|-+=++ +...++.+.
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~--G~eVi~LG~~vp~e~i~~~a~~~~~d-----~V~lS~~~~~--~~~~~~~~~ 75 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEA--GFEVINLGVMTSQEEFIDAAIETDAD-----AILVSSLYGH--GEIDCRGLR 75 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC-----EEEEcCcccc--CHHHHHHHH
Confidence 355555554 478999999888753 4689998 678899999999888774 5555543332 344556666
Q ss_pred HHHHHhccccCCEEEEEecC---C----chhhhhHHHhCCcceee
Q 007074 269 KAFREAGLEFAKQGVAITQE---N----SLLDNTVRIEGWLARFP 306 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~~---~----s~L~~~A~~~g~~~~F~ 306 (619)
+.+++.+.. ..+ |.+-.. + ....+.+++.|+..+|+
T Consensus 76 ~~L~~~~~~-~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 76 EKCIEAGLG-DIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHhcCCC-CCe-EEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 777766543 222 333321 1 11224566667755664
No 84
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=58.45 E-value=26 Score=27.99 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=36.6
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDR 591 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (619)
+++|+.+|++. ..+|+++||+.+|. +..+|-.=|..|...+.
T Consensus 2 ~~~Il~~l~~~------~~~s~~ela~~~~V--S~~TiRRDl~~L~~~g~ 43 (57)
T PF08220_consen 2 QQQILELLKEK------GKVSVKELAEEFGV--SEMTIRRDLNKLEKQGL 43 (57)
T ss_pred HHHHHHHHHHc------CCEEHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 56889999886 49999999999998 78899999999998763
No 85
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=57.52 E-value=94 Score=33.12 Aligned_cols=131 Identities=21% Similarity=0.318 Sum_probs=80.1
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHH---hhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIA---QLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~---~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
-|||-|+.|| |--.+.+.|.+ +-.+.+||.-|.-+-..+. ..+....+..|++=-.|+ |-...+..+.
T Consensus 3 lvIVTGlSGA--GKsvAl~~lED----lGyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~---~~~~~l~~~l 73 (286)
T COG1660 3 LVIVTGLSGA--GKSVALRVLED----LGYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSR---EFFGDLEEVL 73 (286)
T ss_pred EEEEecCCCC--cHHHHHHHHHh----cCeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccc---hhHHHHHHHH
Confidence 4788899888 55556677764 3456689999887776666 333222466777766776 5556666677
Q ss_pred HHHHHhccccCCEEEEEecCCc-hhhhhHHHhCCcceeeccCCCCCcchhhhHhhHHHHHhcCCC-HHHHHHHHHHHhHH
Q 007074 269 KAFREAGLEFAKQGVAITQENS-LLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGID-VREMLAGASLMDEA 346 (619)
Q Consensus 269 ~~l~~~g~~~~~h~VaVT~~~s-~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLlPaal~GiD-i~~lL~GA~~md~~ 346 (619)
+.+++.+ +..-+++.+....+ .+..+.+.. +.=| ++.-|+ .+.||+ =+++|+--+++.+.
T Consensus 74 ~~l~~~~-~~~~~iLFLeA~~~~Lv~RY~etR---R~HP-----------L~~~~~---l~~~I~~ERelL~pLk~~A~~ 135 (286)
T COG1660 74 DELKDNG-DIDPRVLFLEADDETLVRRYSETR---RSHP-----------LSEDGL---LLEAIAKERELLAPLREIADL 135 (286)
T ss_pred HHHHhcC-CCCceEEEEECchhHHHHHHhhhh---hcCC-----------CCccCc---HHHHHHHHHHHHHHHHHHhhh
Confidence 7777665 34577888887543 334443221 2222 233343 334555 47888888887766
Q ss_pred hcC
Q 007074 347 NRT 349 (619)
Q Consensus 347 ~~~ 349 (619)
.-.
T Consensus 136 vID 138 (286)
T COG1660 136 VID 138 (286)
T ss_pred Eee
Confidence 553
No 86
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=57.20 E-value=28 Score=37.02 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGID 233 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~ 233 (619)
.|.+||+||. |..++-+.......+.++.. -|+|...+.
T Consensus 2 ~i~viGvGg~--G~n~v~~l~~~~~~~~~~~a-~ntD~~~L~ 40 (304)
T cd02201 2 KIKVIGVGGG--GGNAVNRMIESGLEGVEFIA-ANTDAQALA 40 (304)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcCCCCceEEE-EECCHHHHh
Confidence 4889999997 88888777654433344443 577966544
No 87
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=56.95 E-value=1.1e+02 Score=34.02 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=88.7
Q ss_pred hHHHHHHHHhcCCCCCceEEE-EeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCE
Q 007074 203 LGPQFVAEALAPDNPPLKIRF-IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQ 281 (619)
Q Consensus 203 LGp~~v~~aL~~~~~~~~i~F-vdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h 281 (619)
+....+.+.+.. +-+.+ +-|=+..-++-+|..+. .+.+|||+|-|-... ...|+.=++.+++......+.
T Consensus 40 ~~~~~L~~il~~----maIVVP~KnE~l~lleGVL~gIP---h~C~IIvVSNS~r~~--~d~f~~E~d~l~~f~~~t~r~ 110 (381)
T PF09488_consen 40 FPREELYDILSK----MAIVVPCKNEKLKLLEGVLSGIP---HDCLIIVVSNSSREP--VDRFKMEVDLLKHFCRLTRRQ 110 (381)
T ss_dssp --HHHHHHHHTT----EEEEEEESS--HHHHHHHHHCS----TTSEEEEEE---CSS--SCHHHHHHHHHHHHHHHCT--
T ss_pred cCHHHHHHHHhC----cEEEEECCCCchhhhhhhhhcCC---CCCeEEEEECCCCCC--ccHHHHHHHHHHHHHHhhcCc
Confidence 356677787753 33333 35666888899999996 389999999987754 566666556555432223577
Q ss_pred EEEEecCCchhhhhHHHhCCcceeeccCCCCC-c--chhhhHhhHHHHHhcCCC------HHHHHHHHHH-HhHHhcCCC
Q 007074 282 GVAITQENSLLDNTVRIEGWLARFPMFDWVGG-R--TSEMSAVGLLPAALQGID------VREMLAGASL-MDEANRTTV 351 (619)
Q Consensus 282 ~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGG-R--fSvlSaVGLlPaal~GiD------i~~lL~GA~~-md~~~~~~~ 351 (619)
+++|-.++-.|.+.-++.||..++. ..|+ | =..---+|++.|.+.|-+ -+.+.-||-. -...
T Consensus 111 ~~~vHQkDp~lA~Af~~aGy~~il~---~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~----- 182 (381)
T PF09488_consen 111 IIIVHQKDPGLAEAFKEAGYPEILD---EDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKD----- 182 (381)
T ss_dssp EEEEETT-HHHHHHHHHTT--TTB----TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHH-----
T ss_pred eEEEecCCHHHHHHHHHcCcHHHhC---CCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHH-----
Confidence 8888876655666666667733332 2232 1 233445777777777743 3444444421 1111
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCceE--EEEechhch----Hh----------HHHHHHHHHHhhcCccccCCCCcccccc
Q 007074 352 LRNNPAALLALCWYWASDGVGSKDM--VVLPYKDSL----LL----------FSRYLQQLVMESLGKEFDLDGNRVNQGL 415 (619)
Q Consensus 352 l~~N~a~llAl~~~~~~~~~g~~~~--vllpY~~~L----~~----------f~~wlqQL~mESlGK~~~~dG~~v~~G~ 415 (619)
||+-.. .. ..-..| +-+.|++.+ -+ -.+|+.+|+....|-+ +.+
T Consensus 183 --------yAAGf~-ms--~spytMVRi~W~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~~gfe---------t~i 242 (381)
T PF09488_consen 183 --------YAAGFA-MS--ESPYTMVRIHWRSKPKVVKGELYFKKWGRVSEITNRYLNRLISAITGFE---------TEI 242 (381)
T ss_dssp --------HHHHHH-C---SSSCEEEEEE------TT---HHHHHHHHHHHHHHHHHHHHHHHHHSS-------------
T ss_pred --------HHhhhc-cc--CCCceEEEEEecCCCceecCcEEEeecccccHHHHHHHHHHhccccCCC---------Cce
Confidence 222111 11 122233 445577666 22 3468999999999987 456
Q ss_pred eEeecCC
Q 007074 416 TVYGNKG 422 (619)
Q Consensus 416 ~~~g~~G 422 (619)
+..|+.|
T Consensus 243 i~TgNAG 249 (381)
T PF09488_consen 243 IKTGNAG 249 (381)
T ss_dssp ---TT-S
T ss_pred EEccCch
Confidence 6666655
No 88
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=56.14 E-value=33 Score=36.58 Aligned_cols=138 Identities=18% Similarity=0.088 Sum_probs=77.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHH
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLL 324 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLl 324 (619)
.-+.|.+|++|+..+.+..... .| +....+++|-++...+.+.|++.|+ +++.++..-..|
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~~-------~~-~l~~~i~~visn~~~~~~~A~~~gI-p~~~~~~~~~~~---------- 154 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRWR-------MG-ELDMDIVGIISNHPDLQPLAVQHDI-PFHHLPVTPDTK---------- 154 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHHH-------CC-CCCcEEEEEEECChhHHHHHHHcCC-CEEEeCCCcccc----------
Confidence 4578899999998876544321 12 2345666665555556799999997 777665331110
Q ss_pred HHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccc
Q 007074 325 PAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEF 404 (619)
Q Consensus 325 Paal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~ 404 (619)
.++-+.++..+.- .+...-|+.-|..-| +.++- ..-.||-.
T Consensus 155 ----------------------------~~~~~~~~~~l~~-----~~~Dlivlagym~il---~~~~l---~~~~~~ii 195 (289)
T PRK13010 155 ----------------------------AQQEAQILDLIET-----SGAELVVLARYMQVL---SDDLS---RKLSGRAI 195 (289)
T ss_pred ----------------------------cchHHHHHHHHHH-----hCCCEEEEehhhhhC---CHHHH---hhccCCce
Confidence 0111122222221 123334444454443 33222 22345555
Q ss_pred cCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeecc
Q 007074 405 DLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLR 449 (619)
Q Consensus 405 ~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~ 449 (619)
+.+. ++.|-- .+.|++.|.+..|.+..=+|...|.+
T Consensus 196 NiHp-----SlLP~f----~G~~~~~~ai~~G~k~tG~TvH~v~~ 231 (289)
T PRK13010 196 NIHH-----SFLPGF----KGARPYHQAHARGVKLIGATAHFVTD 231 (289)
T ss_pred eeCc-----ccCCCC----CCCCHHHHHHHcCCCeEEEEEEEEcC
Confidence 5444 334332 24688999999999998899887754
No 89
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.14 E-value=42 Score=33.47 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=16.8
Q ss_pred ceEEEEecccCchHHHHHHHHhc
Q 007074 191 TSILSVGIGGSALGPQFVAEALA 213 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~ 213 (619)
.+|++||.|| +|...+.....
T Consensus 20 s~VlviG~gg--lGsevak~L~~ 40 (198)
T cd01485 20 AKVLIIGAGA--LGAEIAKNLVL 40 (198)
T ss_pred CcEEEECCCH--HHHHHHHHHHH
Confidence 5799999998 88888876544
No 90
>PRK13018 cell division protein FtsZ; Provisional
Probab=55.48 E-value=37 Score=37.60 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=63.0
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEE--cC---CCCCHHHHH-HH
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVI--SK---SGGTPETRN-GL 264 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIVi--SK---SGtT~ETl~-~~ 264 (619)
-+|.|||+||. |..++-+.+.....+.++.. -|+|... |+.++.+ +-+.+=- .+ +|+.+|.-. .+
T Consensus 29 ~~I~ViGvGGa--G~N~v~~m~~~~~~~v~~ia-iNTD~q~----L~~~~a~--~ki~iG~~~t~G~GaG~dp~~G~~aa 99 (378)
T PRK13018 29 PKIVVVGCGGA--GNNTINRLYEIGIEGAETIA-INTDAQH----LAMIKAD--KKILIGKSLTRGLGAGGDPEVGRKAA 99 (378)
T ss_pred CeEEEEEeCCc--HHHHHHHHHHcCCCCceEEE-EECCHHH----HhcCCCC--cEEecCCccCCCCCCCCChHHHHHHH
Confidence 36999999997 88888877654333344333 5789754 4444421 3232221 22 577777532 23
Q ss_pred HHHHHHHHHhccccCCEEEEEec--CCc-------hhhhhHHHhCCc--ceeecc-CCCCCcchhhhHhhH
Q 007074 265 LEVQKAFREAGLEFAKQGVAITQ--ENS-------LLDNTVRIEGWL--ARFPMF-DWVGGRTSEMSAVGL 323 (619)
Q Consensus 265 ~~a~~~l~~~g~~~~~h~VaVT~--~~s-------~L~~~A~~~g~~--~~F~~p-d~VGGRfSvlSaVGL 323 (619)
...++.+++.- + ...+|.||. -|+ .+.+++++.+.. .+...| ...|.|...-...||
T Consensus 100 ee~~d~I~~~l-e-~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL 168 (378)
T PRK13018 100 EESRDEIKEVL-K-GADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGI 168 (378)
T ss_pred HHHHHHHHHHh-c-CCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHH
Confidence 33444444431 2 233355543 221 466778776642 223344 334555555555554
No 91
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=54.66 E-value=1.2e+02 Score=32.59 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=63.9
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhC---cCCCcEEEEEEcCCCCCHHHHHHHHHH
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLG---PELASTLVVVISKSGGTPETRNGLLEV 267 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~---~~l~~TLvIViSKSGtT~ETl~~~~~a 267 (619)
+-|||-|+.|| |=-.+.++|.+ +-.+.+||+-|.-+..+++.+. ...++..+++=..|+.-.+. +..+
T Consensus 2 ~~vIiTGlSGa--GKs~Al~~lED----~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~---~~~~ 72 (284)
T PF03668_consen 2 ELVIITGLSGA--GKSTALRALED----LGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFED---LFEA 72 (284)
T ss_pred eEEEEeCCCcC--CHHHHHHHHHh----cCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHH---HHHH
Confidence 35889999998 55566678865 3467789999998888776665 33457888888898875443 4444
Q ss_pred HHHHHHhccccCCEEEEEecCCc-hhhhhH
Q 007074 268 QKAFREAGLEFAKQGVAITQENS-LLDNTV 296 (619)
Q Consensus 268 ~~~l~~~g~~~~~h~VaVT~~~s-~L~~~A 296 (619)
.+.+++.+ ..-+++......+ .+..+.
T Consensus 73 ~~~l~~~~--~~~~ilFLdA~d~~LirRy~ 100 (284)
T PF03668_consen 73 LDELRKKG--IDVRILFLDASDEVLIRRYS 100 (284)
T ss_pred HHHHHhcC--CceEEEEEECChHHHHHHHH
Confidence 55555553 3467888887543 344444
No 92
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=54.47 E-value=1.1e+02 Score=30.42 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=57.1
Q ss_pred eEEEEecccC--chHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 192 SILSVGIGGS--ALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 192 ~VVvIGIGGS--~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
.||+.-++|- .+|-.++..+|+.. +.+++++ .|+.++.+.+.+.+.+|+ +|.+|-|-++. +..++...
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~--G~~vi~LG~~vp~e~~v~~~~~~~pd-----~v~lS~~~~~~--~~~~~~~i 156 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRAN--GFDVIDLGRDVPIDTVVEKVKKEKPL-----MLTGSALMTTT--MYGQKDIN 156 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhC--CcEEEECCCCCCHHHHHHHHHHcCCC-----EEEEccccccC--HHHHHHHH
Confidence 5666666643 79999999999864 4689988 778899999999988876 77777765553 44567777
Q ss_pred HHHHHhcc
Q 007074 269 KAFREAGL 276 (619)
Q Consensus 269 ~~l~~~g~ 276 (619)
+.+++.|.
T Consensus 157 ~~l~~~~~ 164 (197)
T TIGR02370 157 DKLKEEGY 164 (197)
T ss_pred HHHHHcCC
Confidence 77777654
No 93
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=54.31 E-value=35 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEe
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIA 595 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (619)
.-+|+..|.+.. .++|+.+||+.+|. ..-+|+.+|..|..+ |++.
T Consensus 7 ~~~Il~~l~~~~-----~~~t~~~ia~~l~i--~~~tv~r~l~~L~~~--g~l~ 51 (91)
T smart00346 7 GLAVLRALAEEP-----GGLTLAELAERLGL--SKSTAHRLLNTLQEL--GYVE 51 (91)
T ss_pred HHHHHHHHHhCC-----CCcCHHHHHHHhCC--CHHHHHHHHHHHHHC--CCee
Confidence 346677776642 48999999999998 567899999999876 4443
No 94
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=53.73 E-value=1.9e+02 Score=31.79 Aligned_cols=122 Identities=22% Similarity=0.274 Sum_probs=60.4
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEc--C---CCCCHHHHH-HH
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVIS--K---SGGTPETRN-GL 264 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViS--K---SGtT~ETl~-~~ 264 (619)
-+|.+||+||. |..++-+.........++. +-|+|... |+.++. ++.+.+=-+ | +|+.+|.-. .+
T Consensus 18 ~~i~viGvGg~--G~n~v~~l~~~~~~~~~~i-ainTD~~~----L~~~~a--~~ki~iG~~~t~G~GaG~~~~~G~~~a 88 (349)
T TIGR00065 18 AKIKVIGVGGG--GNNTVNRMLEEGVEGVEFI-AINTDAQH----LKTTKA--DKKILIGKKLTRGLGAGGNPEIGRKAA 88 (349)
T ss_pred CeEEEEEeCCc--HHHHHHHHHHcCCCceEEE-EEECCHHH----HhcCCC--CeEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 36999999997 8888877766543333333 36779655 444542 233333221 1 456666422 22
Q ss_pred HHHHHHHHHhccccCCEEEEEec--CCc-------hhhhhHHHhCCc--ceeeccCCC-CCcchhhhHhhH
Q 007074 265 LEVQKAFREAGLEFAKQGVAITQ--ENS-------LLDNTVRIEGWL--ARFPMFDWV-GGRTSEMSAVGL 323 (619)
Q Consensus 265 ~~a~~~l~~~g~~~~~h~VaVT~--~~s-------~L~~~A~~~g~~--~~F~~pd~V-GGRfSvlSaVGL 323 (619)
...++.+++. .+ ...+|.||. -|+ .+.+++++.+.. .++++|-.- |-+...-+..||
T Consensus 89 ee~~d~Ir~~-le-~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l 157 (349)
T TIGR00065 89 EESRDEIRKL-LE-GADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGL 157 (349)
T ss_pred HHHHHHHHHH-Hh-CCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHH
Confidence 2333333332 11 233344443 221 466777776653 344555322 333444444443
No 95
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=52.24 E-value=16 Score=30.29 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 537 EVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 537 ~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
.+=+.|++|++++.+... ..+-+-|+.|||+.+|. .+.-+|...|+.|...
T Consensus 3 ~LT~rQ~~vL~~I~~~~~-~~G~~Pt~rEIa~~~g~-~S~~tv~~~L~~Le~k 53 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIE-ENGYPPTVREIAEALGL-KSTSTVQRHLKALERK 53 (65)
T ss_dssp ---HHHHHHHHHHHHHHH-HHSS---HHHHHHHHTS-SSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhCC-CChHHHHHHHHHHHHC
Confidence 344668888888776331 23457799999999999 5788999999999864
No 96
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=51.98 E-value=1.1e+02 Score=28.86 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=50.7
Q ss_pred EEEEecccCchHHHHHHHHhcCC---------------CCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCC
Q 007074 193 ILSVGIGGSALGPQFVAEALAPD---------------NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGT 257 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~---------------~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT 257 (619)
|+|+|--| .+|-.++.+.+... ..++++...|-.|++.+.+.++.. +++|.+++-+..
T Consensus 1 I~V~GatG-~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~-----d~vi~~~~~~~~- 73 (183)
T PF13460_consen 1 ILVFGATG-FVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGA-----DAVIHAAGPPPK- 73 (183)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTS-----SEEEECCHSTTT-
T ss_pred eEEECCCC-hHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhc-----chhhhhhhhhcc-
Confidence 45554333 35666666655432 123455555778888888887754 677777765444
Q ss_pred HHHHHHHHHHHHHHHHhccccCCEEEEEecC
Q 007074 258 PETRNGLLEVQKAFREAGLEFAKQGVAITQE 288 (619)
Q Consensus 258 ~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~ 288 (619)
+ ...++.+.+.+++.| .+|+|.+++-
T Consensus 74 -~-~~~~~~~~~a~~~~~---~~~~v~~s~~ 99 (183)
T PF13460_consen 74 -D-VDAAKNIIEAAKKAG---VKRVVYLSSA 99 (183)
T ss_dssp -H-HHHHHHHHHHHHHTT---SSEEEEEEET
T ss_pred -c-ccccccccccccccc---cccceeeecc
Confidence 2 555555566555554 5689999873
No 97
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=50.46 E-value=10 Score=37.42 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=36.6
Q ss_pred EEecccCchHHHHHHHHhcCCCC--CceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCH
Q 007074 195 SVGIGGSALGPQFVAEALAPDNP--PLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTP 258 (619)
Q Consensus 195 vIGIGGS~LGp~~v~~aL~~~~~--~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ 258 (619)
+|+||+|.=||+++.+.|..-.. +..+.++...+|.....+.+.|+.. +.+=|..-+.|..+
T Consensus 1 vV~IGaSaGG~~al~~il~~lp~~~~~~ivivqH~~~~~~~~l~~~L~~~--t~l~V~~a~~g~~l 64 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALPADFPAAIVIVQHMPPGFTSSLAERLARH--TSLPVREAEDGEPL 64 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-TTSSSEEEEEE---TTHHHHHHHHHHHH--SSSEEEE--TT-B-
T ss_pred CEEEEeCCCCHHHHHHHHHHhccCCCceEEEEECCCCCcchHHHHHHhCc--CCCeEEEcCCCCEe
Confidence 68999999999999999875422 3567777888887666666666532 34444444555544
No 98
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=50.18 E-value=30 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCC
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDR 591 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (619)
.+|.++|++. ...|+.+||..++. +.++|=.+|.+|-..++
T Consensus 3 ~~i~~~l~~~------~~~S~~eLa~~~~~--s~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 3 QEIRDYLRER------GRVSLAELAREFGI--SPEAVEAMLEQLIRKGY 43 (69)
T ss_dssp HHHHHHHHHS-------SEEHHHHHHHTT----HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHc------CCcCHHHHHHHHCc--CHHHHHHHHHHHHHCCc
Confidence 3678888886 48999999999998 67778888999998764
No 99
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=49.73 E-value=2.4e+02 Score=30.95 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=69.9
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcC-----CCCCHHHH-HHH
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISK-----SGGTPETR-NGL 264 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSK-----SGtT~ETl-~~~ 264 (619)
-.|.|||+||. |..++.......-.+++++ .-|+|-.. |+.... .+.+-+--+. -|.-+|.- .++
T Consensus 12 ~~I~VIGvGg~--G~n~v~~m~~~~~~gve~i-a~nTD~q~----L~~~~a--~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 12 ARIKVIGVGGA--GGNAVNRMIEEGVEGVEFI-AINTDAQA----LKSSKA--DRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ceEEEEEeCCc--chHHHHHHHHhhhCceEEE-EeccCHHH----Hhcccc--CeEEEeccceeeccCCCCCcHHHHHHH
Confidence 56999999997 8888877776544434433 36889555 444432 2344333331 24555552 333
Q ss_pred HHHHHHHHHhccccCCEEEEEecC--Cc-------hhhhhHHHhCCc----ceeeccCCCCCcchhhhHhhH
Q 007074 265 LEVQKAFREAGLEFAKQGVAITQE--NS-------LLDNTVRIEGWL----ARFPMFDWVGGRTSEMSAVGL 323 (619)
Q Consensus 265 ~~a~~~l~~~g~~~~~h~VaVT~~--~s-------~L~~~A~~~g~~----~~F~~pd~VGGRfSvlSaVGL 323 (619)
+..++.+.+. + .+.++|.||.- ++ .+.+.+++.|.+ -+.|+.. -|.++.-.-.-|+
T Consensus 83 ee~~~~I~~~-l-~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~-EG~~r~~~A~~gi 151 (338)
T COG0206 83 EESIEEIEEA-L-KGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSF-EGSPRMENAEEGI 151 (338)
T ss_pred HHHHHHHHHH-h-ccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchh-cCchHHHHHHHHH
Confidence 4444444332 1 24558888752 11 578889987764 2345544 3677777777775
No 100
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=49.44 E-value=56 Score=30.49 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=26.5
Q ss_pred hhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC
Q 007074 229 PAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE 288 (619)
Q Consensus 229 P~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~ 288 (619)
.+.+.+.+...+- ....|++-.+|-+ |..|+..+++++.+.+. ++++.||++
T Consensus 56 a~~~~~~l~~~gv--p~~~I~~e~~s~~---T~ena~~~~~~~~~~~~---~~iilVT~~ 107 (155)
T PF02698_consen 56 AEAMRDYLIELGV--PEERIILEPKSTN---TYENARFSKRLLKERGW---QSIILVTSP 107 (155)
T ss_dssp HHHHHHHHHHT-----GGGEEEE----S---HHHHHHHHHHHHHT-SS---S-EEEE--C
T ss_pred HHHHHHHHHhccc--chheeEccCCCCC---HHHHHHHHHHHHHhhcC---CeEEEECCH
Confidence 3566666654431 2345666777766 45567777777776654 789999984
No 101
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=47.83 E-value=67 Score=34.39 Aligned_cols=121 Identities=25% Similarity=0.264 Sum_probs=61.8
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEc-----CCCCCHHHH-HHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVIS-----KSGGTPETR-NGLL 265 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViS-----KSGtT~ETl-~~~~ 265 (619)
.|.+||+||- |..++-+.......+.++.. -|+|... |+.++.+ +.+.+=-+ =+|+.+|-- ..++
T Consensus 2 ~i~viGvGg~--G~n~v~~~~~~~~~~~~~ia-inTd~~~----L~~~~a~--~ki~iG~~~t~g~GaG~~~~~G~~~a~ 72 (303)
T cd02191 2 KIAVIGFGGA--GGNIVDKFLEYDKEGRSAVA-VNTDAQD----LLGLEAE--NRVLIGQARTKGLGAGANPELGAEAAE 72 (303)
T ss_pred EEEEEEECch--HHHHHHHHHHcCCCCccEEE-EECcHHH----HhcCCCC--cEEecCCccccCCCCCCCHHHHHHHHH
Confidence 4889999996 88888777764433345444 4778554 4445532 33322111 256777642 3333
Q ss_pred HHHHHHHHhccccCCEEEEEec-C-C-------chhhhhHHHhCCc--ceeeccCCC-CCcchhhhHhhH
Q 007074 266 EVQKAFREAGLEFAKQGVAITQ-E-N-------SLLDNTVRIEGWL--ARFPMFDWV-GGRTSEMSAVGL 323 (619)
Q Consensus 266 ~a~~~l~~~g~~~~~h~VaVT~-~-~-------s~L~~~A~~~g~~--~~F~~pd~V-GGRfSvlSaVGL 323 (619)
..++.+++.-.. ..+|.||. - | ..+.+.+++.+.. .++++|..- |-+...-+..||
T Consensus 73 e~~~~I~~~le~--~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l 140 (303)
T cd02191 73 EVQEAIDNIPVH--VDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGF 140 (303)
T ss_pred HHHHHHHHHHcC--CCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHH
Confidence 444444443221 22455553 1 1 1456777776642 345555433 233333344443
No 102
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=47.28 E-value=36 Score=29.50 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHh
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMA 587 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (619)
.+..-++..|.++ +|.|.++||.++|. .+|.|-.+|.++.
T Consensus 24 ~L~r~LLr~LA~G------~PVt~~~LA~a~g~--~~e~v~~~L~~~p 63 (77)
T PF12324_consen 24 WLLRPLLRLLAKG------QPVTVEQLAAALGW--PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHHHHHHTTT------S-B-HHHHHHHHT----HHHHHHHHHH-T
T ss_pred HHHHHHHHHHHcC------CCcCHHHHHHHHCC--CHHHHHHHHHhCC
Confidence 3456677888775 69999999999998 7788888888875
No 103
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=46.77 E-value=1.9e+02 Score=31.66 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCC-----ceEEEEeCCChhHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPP-----LKIRFIDNTDPAGIDHQI 236 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~-----~~i~FvdN~DP~~i~~~l 236 (619)
.|.+||+||- |..++.......... ++..++ |+|+..+..+.
T Consensus 2 ~i~viGvGg~--G~niv~~l~~~~~~~~~~~~~~~iav-ntD~~~L~~l~ 48 (349)
T cd02202 2 RVLIIGVGQA--GGRIVDALNRHDKRSGFGYCVGALAI-NTAKNDLKGLK 48 (349)
T ss_pred EEEEEEeCCc--HHHHHHHHHHhCCCcCCccceeEEEE-ECCHHHHHhhh
Confidence 4889999997 888887776543221 455555 66988766543
No 104
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=46.57 E-value=1.4e+02 Score=27.60 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=24.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecC
Q 007074 248 VVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQE 288 (619)
Q Consensus 248 vIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~ 288 (619)
++.-.+|-+ |..|+..+++++.+.+. ++++.||+.
T Consensus 70 I~~e~~s~~---T~ena~~~~~~~~~~~~---~~i~lVTs~ 104 (150)
T cd06259 70 ILLEDRSTN---TYENARFSAELLRERGI---RSVLLVTSA 104 (150)
T ss_pred eeecCCCCC---HHHHHHHHHHHHHhcCC---CeEEEECCH
Confidence 444556666 55567778888877653 789999984
No 105
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=46.27 E-value=54 Score=34.80 Aligned_cols=138 Identities=18% Similarity=0.070 Sum_probs=76.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHH
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLL 324 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLl 324 (619)
.-++|.+|.+|++.|.+...-. . | .....+++|-++...+..+|++.|+ +++.++..- +|
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~~------~-~-~~~~~i~~visn~~~~~~lA~~~gI-p~~~~~~~~---~~-------- 149 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRWR------S-G-ELPVEIAAVISNHDDLRSLVERFGI-PFHHVPVTK---ET-------- 149 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHHH------c-C-CCCcEEEEEEEcChhHHHHHHHhCC-CEEEeccCc---cc--------
Confidence 4578899999999887654321 1 1 2345566655445567788999997 777765420 11
Q ss_pred HHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccc
Q 007074 325 PAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEF 404 (619)
Q Consensus 325 Paal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~ 404 (619)
..+.-+.++..+.- .+....|+.-|...| +..+-+.+ .+|-.
T Consensus 150 ---------------------------~~~~~~~~~~~l~~-----~~~Dlivlagy~~il---~~~~l~~~---~~~ii 191 (286)
T PRK06027 150 ---------------------------KAEAEARLLELIDE-----YQPDLVVLARYMQIL---SPDFVARF---PGRII 191 (286)
T ss_pred ---------------------------cchhHHHHHHHHHH-----hCCCEEEEecchhhc---CHHHHhhc---cCCce
Confidence 00111112222221 123334444454443 33222222 35555
Q ss_pred cCCCCcccccceEeecCCCCChhhHHHhhhccCCceeeEEEeecc
Q 007074 405 DLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLR 449 (619)
Q Consensus 405 ~~dG~~v~~G~~~~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~ 449 (619)
+.+. ++.|-- .+.|++.|.+..|.+..=+|...+.+
T Consensus 192 NiHp-----SLLP~y----rG~~~~~~ai~~G~~~tG~TiH~v~~ 227 (286)
T PRK06027 192 NIHH-----SFLPAF----KGAKPYHQAYERGVKLIGATAHYVTA 227 (286)
T ss_pred ecCc-----ccCCCC----CCCCHHHHHHHCCCCeEEEEEEEEcC
Confidence 5444 444422 24688899999999888888887754
No 106
>PRK09330 cell division protein FtsZ; Validated
Probab=45.52 E-value=81 Score=35.12 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=64.9
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcC-----CCCCHHHH-HHH
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISK-----SGGTPETR-NGL 264 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSK-----SGtT~ETl-~~~ 264 (619)
..|.|||+||. |..+|-+.....-.+.++ +.-|+|... |...+. .+.+.+=-+. +|+-+|.- .++
T Consensus 14 ~~IkViGvGG~--G~Nav~~m~~~~~~~v~f-ia~NTD~q~----L~~~~a--~~ki~lG~~~t~GlGaG~~pe~G~~aa 84 (384)
T PRK09330 14 AVIKVIGVGGG--GGNAVNRMIEEGIQGVEF-IAANTDAQA----LLKSKA--PVKIQLGEKLTRGLGAGANPEVGRKAA 84 (384)
T ss_pred CeEEEEEECCc--HHHHHHHHHHcCCCCceE-EEEeCcHHH----HhcCCC--CeEEEcCCcccccCCCCCCHHHHHHHH
Confidence 46999999997 888887776654333443 246889554 444442 1333332221 35666642 233
Q ss_pred HHHHHHHHHhccccCCEEEEEecC--Cc-------hhhhhHHHhCCc--ceeeccCCC-CCcchhhhHhhH
Q 007074 265 LEVQKAFREAGLEFAKQGVAITQE--NS-------LLDNTVRIEGWL--ARFPMFDWV-GGRTSEMSAVGL 323 (619)
Q Consensus 265 ~~a~~~l~~~g~~~~~h~VaVT~~--~s-------~L~~~A~~~g~~--~~F~~pd~V-GGRfSvlSaVGL 323 (619)
++.++.+++.- + +..+|.||.. |+ .+.++|++.|.. .+++.|-.- |.|-..-...||
T Consensus 85 ee~~e~I~~~l-~-~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL 153 (384)
T PRK09330 85 EESREEIREAL-E-GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGI 153 (384)
T ss_pred HHHHHHHHHHH-c-CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHH
Confidence 33344444331 2 3556677652 22 467888887753 345556333 334434444443
No 107
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=44.85 E-value=52 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHH
Q 007074 533 KAAGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIA 584 (619)
Q Consensus 533 ~~a~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (619)
.=.++..+.+.+|.++|.++ |+...|+.+|+++.|. +++.|.+.+|
T Consensus 23 ~C~~~~e~~f~kV~~yLr~~----p~~~ati~eV~e~tgV--s~~~I~~~Ir 68 (137)
T TIGR03826 23 SCYEEEEREFEKVYKFLRKH----ENRQATVSEIVEETGV--SEKLILKFIR 68 (137)
T ss_pred HHhHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 34556778899999999985 5567999999999998 6777777766
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=43.96 E-value=27 Score=36.79 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+-.|++.|.+ .+.|++|||+++|. +.+.+..+||.|++-+
T Consensus 12 ~Lglfd~L~~-------gp~t~~eLA~~~~~--~~~~~~~lL~~L~~lg 51 (306)
T TIGR02716 12 ELDLFSHMAE-------GPKDLATLAADTGS--VPPRLEMLLETLRQMR 51 (306)
T ss_pred HcCcHHHHhc-------CCCCHHHHHHHcCC--ChHHHHHHHHHHHhCC
Confidence 4478888866 38999999999998 5668899999999863
No 109
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.93 E-value=37 Score=42.37 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCcceEEEEecccCchH--------HHHHHHHhcCCCCCceEEEE
Q 007074 188 GRFTSILSVGIGGSALG--------PQFVAEALAPDNPPLKIRFI 224 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LG--------p~~v~~aL~~~~~~~~i~Fv 224 (619)
+.++.|++||-|+..+| ..-+..+|+.. +.+++.+
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~--G~~vi~v 47 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREE--GYRVVLV 47 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHc--CCEEEEE
Confidence 45889999999998776 23346777643 2344444
No 110
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=43.50 E-value=1e+02 Score=31.33 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=49.6
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHH-hhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIA-QLGPELASTLVVVISKSGGTPETRNGLLEVQKA 270 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~-~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~ 270 (619)
.+++||.|= +|... .+.|.... -.+..++. |++...+.+. .+ .+.+++. +++..++
T Consensus 2 ~iiIiG~G~--vG~~v-a~~L~~~g--~~Vv~Id~-d~~~~~~~~~~~~-----~~~~v~g--d~t~~~~---------- 58 (225)
T COG0569 2 KIIIIGAGR--VGRSV-ARELSEEG--HNVVLIDR-DEERVEEFLADEL-----DTHVVIG--DATDEDV---------- 58 (225)
T ss_pred EEEEECCcH--HHHHH-HHHHHhCC--CceEEEEc-CHHHHHHHhhhhc-----ceEEEEe--cCCCHHH----------
Confidence 588888872 34333 34444332 25676766 7777665443 22 3444444 4555554
Q ss_pred HHHhccccCCEEEEEecC---CchhhhhHHH
Q 007074 271 FREAGLEFAKQGVAITQE---NSLLDNTVRI 298 (619)
Q Consensus 271 l~~~g~~~~~h~VaVT~~---~s~L~~~A~~ 298 (619)
|++.|.+-...+||+|++ ++.+-.+|.+
T Consensus 59 L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 59 LEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred HHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 556777778999999985 3456666655
No 111
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=43.11 E-value=3.1e+02 Score=26.36 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccccCCCCcccccceEeecCCCCChhhHHHh
Q 007074 353 RNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQ 432 (619)
Q Consensus 353 ~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~~~dG~~v~~G~~~~g~~Gt~dQHS~~Ql 432 (619)
.+|||..+|.-. . | +.=++..- +.....+.-|+|-+.|--+- ..+.+.-+...|-...-
T Consensus 4 ~~n~Ak~LA~~L---~---~-~~Pvi~~~-~~~~~vA~R~k~qlnEnAK~-------------~A~~~~lPE~~Hn~i~g 62 (155)
T PF10432_consen 4 FVNPAKRLALEL---A---G-RIPVIYGS-PLYAAVARRWKQQLNENAKY-------------PAFAAVLPEANHNEIVG 62 (155)
T ss_dssp GHHHHHHHHHHH---T---T-SEEEEEEC-GCGCHHHHHHHHHHHHTT-----------------EEEEETCHHHCHHHC
T ss_pred ccCHHHHHHHHH---c---C-CCcEEEEC-ccchHHHHHHHHHHHHHhCC-------------ccchhcchhhhhhhhhh
Confidence 479999998732 2 3 33333333 67778887777777774432 22222333444544443
Q ss_pred hhcc---CCceeeEEEeeccCCCCCCccccCCCCChHHHHHHhhccchhhcccCCcceeEEEeccCC-hhhHHHHHHHHH
Q 007074 433 LREG---VHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVT-PRSVGALVALYE 508 (619)
Q Consensus 433 l~qG---~~~~~~tFI~v~~~~~~~~~~~l~~g~t~~d~L~~~~~gt~~al~~ggrPs~tI~l~~l~-~~~LGaLialyE 508 (619)
+... ...+.+-|+ . +. .........+.-+++-+.+.+.+.+.|..+.-+ -..+-.|+++-.
T Consensus 63 ~~~~~~~~~~~~~v~l--~-d~------------~~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl~~li~l~d 127 (155)
T PF10432_consen 63 WEGPEPPGGRLRVVLL--R-DP------------EDHPRVQRRVEITREIAEDRGVRVIEVEAEGGSPLERLASLIYLGD 127 (155)
T ss_dssp TSS-GGGGTTEEEEEE--C--T------------CCHHHHHHHHHHHHHHHTTCSSEEEEE--SCCCHHHHHHHHHHHHH
T ss_pred ccCCcccccceEEEEE--E-cC------------CccccchhhhHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 3322 122222222 1 11 011112223344555566778899999888666 355889999999
Q ss_pred HHHHHHHHhhCcCCCCCCchHHHHHHH
Q 007074 509 RAVGIYASLVNINAYHQPGVEAGKKAA 535 (619)
Q Consensus 509 ~av~~~g~L~gINpFDQPGVE~gK~~a 535 (619)
++..+.|.+.||||..-|-+...|+..
T Consensus 128 ~aS~YLA~~~GvDP~~v~~I~~lK~~l 154 (155)
T PF10432_consen 128 YASVYLALLYGVDPTPVPIIDELKERL 154 (155)
T ss_dssp HHHHHHHHHCT--SS-TCCCHHHHHHH
T ss_pred HHHHHHHHHhCcCCCcchHHHHHHhcc
Confidence 999999999999999999999888743
No 112
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=42.72 E-value=50 Score=28.11 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHh
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMA 587 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (619)
+.+|.+.|.+= +.++-.|-.+||+.+|.|...-.|-.+|++.-
T Consensus 2 ~~~V~~~v~~I---P~G~v~TYg~iA~~~g~p~~~R~Vg~al~~np 44 (79)
T cd06445 2 QRRVWEALRQI---PYGEVTTYGQIAKLAGTPKAARAVGSALARNP 44 (79)
T ss_pred HHHHHHHHhcC---CCCCcCcHHHHHHHHCCCCcHHHHHHHHHhCC
Confidence 56788888763 68899999999999999989999888866553
No 113
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=42.48 E-value=65 Score=26.67 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHH
Q 007074 535 AGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAH 585 (619)
Q Consensus 535 a~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (619)
+++|.+...++..-|++ .-|.+|||+.+|. ..+.|.+++..
T Consensus 3 l~~i~~a~~~L~~~lgr--------~Pt~eEiA~~lgi--s~~~v~~~l~~ 43 (78)
T PF04539_consen 3 LRKIERARRELEQELGR--------EPTDEEIAEELGI--SVEEVRELLQA 43 (78)
T ss_dssp HHHHHHHHHHHHHHHSS----------BHHHHHHHHTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------CCCHHHHHHHHcc--cHHHHHHHHHh
Confidence 34555555565555544 6799999999999 77888888764
No 114
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.47 E-value=55 Score=29.13 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=35.3
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCC---CchhhHHHHHHHHHhcCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHT---PEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 590 (619)
+..|+++|.+.. .++|++||.+++.. .-..-|||..|.-|...+
T Consensus 3 R~~Il~~l~~~~-----~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 3 RLAILEVLLESD-----GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 456888887753 68999999999854 236899999999999875
No 115
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=41.60 E-value=58 Score=28.58 Aligned_cols=42 Identities=10% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+-.+|+..|.+.. ..|..+||+.+|. ...+|.+.++.|..++
T Consensus 4 ~D~~il~~L~~~~------~~~~~~la~~l~~--s~~tv~~~l~~L~~~g 45 (108)
T smart00344 4 IDRKILEELQKDA------RISLAELAKKVGL--SPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 3468888888853 7999999999999 6778999999999975
No 116
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=40.81 E-value=2.8e+02 Score=29.30 Aligned_cols=125 Identities=18% Similarity=0.314 Sum_probs=76.9
Q ss_pred hHHHHHHHHhcCC---CCCceEEEEeC---CChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcc
Q 007074 203 LGPQFVAEALAPD---NPPLKIRFIDN---TDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGL 276 (619)
Q Consensus 203 LGp~~v~~aL~~~---~~~~~i~FvdN---~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~ 276 (619)
+|.-.+.+.+.++ +.++.++.+.+ .+|+.+.++...+-.+.+--++|++|--+.++=+. .+|+.|.+.
T Consensus 13 ig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~----~ARE~l~~~-- 86 (277)
T PRK00994 13 IGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPK----KAREILKAA-- 86 (277)
T ss_pred cchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCch----HHHHHHHhc--
Confidence 4555566666554 23577887744 77998887665551112235788999998888774 456666555
Q ss_pred ccCCEEEEEec-CCchhhhhHHHhCCc-ceeeccCCCCCcchhhhHhhHHHHHhcCCCHHHHHH
Q 007074 277 EFAKQGVAITQ-ENSLLDNTVRIEGWL-ARFPMFDWVGGRTSEMSAVGLLPAALQGIDVREMLA 338 (619)
Q Consensus 277 ~~~~h~VaVT~-~~s~L~~~A~~~g~~-~~F~~pd~VGGRfSvlSaVGLlPaal~GiDi~~lL~ 338 (619)
+...|.||+ ++.+-++.-+++||. -+.+...-||-|--++-++=+ ++..-|+-..|+
T Consensus 87 --~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpMIGArREFLDP~EM---a~fNaD~~kVLa 145 (277)
T PRK00994 87 --GIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPMIGARREFLDPVEM---ALFNADVLKVLA 145 (277)
T ss_pred --CCCEEEEcCCCccchHHHHHhcCCcEEEEecCccccchhhccCHHHH---HHhhhhHHHHHH
Confidence 346888998 443333333455653 245666778999888888764 444444444443
No 117
>PRK06179 short chain dehydrogenase; Provisional
Probab=40.39 E-value=3.4e+02 Score=27.18 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=37.5
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCC---------------CCceEEEEeCCChhHHHHHHHhhCcCC--CcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDN---------------PPLKIRFIDNTDPAGIDHQIAQLGPEL--ASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~---------------~~~~i~FvdN~DP~~i~~~l~~L~~~l--~~TLvIViSK 253 (619)
+.|+|+| |.+.+|-.++.+.+.... .+..++-.|-.|++.+.++++.+..+. -+.+|..+.-
T Consensus 5 ~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 5 KVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 3588888 667889888877654311 112333347788999888887762111 1456555543
No 118
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=40.17 E-value=63 Score=40.38 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.5
Q ss_pred CCcceEEEEecccCchH
Q 007074 188 GRFTSILSVGIGGSALG 204 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LG 204 (619)
+.++.|++||-|...+|
T Consensus 4 ~~~~kvlviG~g~~~ig 20 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIG 20 (1050)
T ss_pred CCCcEEEEECCCcchhc
Confidence 56899999999987766
No 119
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=39.89 E-value=3.6e+02 Score=28.03 Aligned_cols=129 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred EEEEecccCchHHHHHHHHhcCCC---CCceEEEEeC---CChhHHHHHH----HhhCcCCCcEEEEEEcCCCCCHHHHH
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDN---PPLKIRFIDN---TDPAGIDHQI----AQLGPELASTLVVVISKSGGTPETRN 262 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~---~~~~i~FvdN---~DP~~i~~~l----~~L~~~l~~TLvIViSKSGtT~ETl~ 262 (619)
|-+|-+|- +|...+.+.|.+++ .++.+.++.+ .||+.+.++. +..+| -.||.+|-.-..+=+
T Consensus 5 ig~ik~Gn--iGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~p----Dfvi~isPNpaaPGP-- 76 (277)
T COG1927 5 IGFIKCGN--IGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNP----DFVIYISPNPAAPGP-- 76 (277)
T ss_pred EEEEEecc--cchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCC----CEEEEeCCCCCCCCc--
Confidence 44555554 57777778776653 4578888843 7898665554 55554 356667765544433
Q ss_pred HHHHHHHHHHHhccccCCEEEEEec-CCchhhhhHHHhCCc-ceeeccCCCCCcchhhhHhhHHHHHhcCCCHHHHHH
Q 007074 263 GLLEVQKAFREAGLEFAKQGVAITQ-ENSLLDNTVRIEGWL-ARFPMFDWVGGRTSEMSAVGLLPAALQGIDVREMLA 338 (619)
Q Consensus 263 ~~~~a~~~l~~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~-~~F~~pd~VGGRfSvlSaVGLlPaal~GiDi~~lL~ 338 (619)
..+|+.|.+. ..-.|.|.+ ++-+.+..-+++|+. -++....-+|-|--++-+|-+ ++...|+-+.|+
T Consensus 77 --~kARE~l~~s----~~PaiiigDaPg~~vkdeleeqGlGYIivk~DpmiGArREFLDPvEM---A~fNaDv~kVLa 145 (277)
T COG1927 77 --KKAREILSDS----DVPAIIIGDAPGLKVKDELEEQGLGYIIVKADPMIGARREFLDPVEM---ASFNADVMKVLA 145 (277)
T ss_pred --hHHHHHHhhc----CCCEEEecCCccchhHHHHHhcCCeEEEecCCcccchhhhhcCHHHH---HhhhhHHHHHHH
Confidence 3456666654 344677887 444444444566653 244555778999888888764 333444444433
No 120
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=39.27 E-value=74 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 558 VEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
..++|..+||+.+|. ..++|.++|+.|...
T Consensus 23 ~~~~s~~ela~~~g~--s~~tv~r~l~~L~~~ 52 (67)
T cd00092 23 QLPLTRQEIADYLGL--TRETVSRTLKELEEE 52 (67)
T ss_pred cCCcCHHHHHHHHCC--CHHHHHHHHHHHHHC
Confidence 357999999999998 788999999999986
No 121
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.25 E-value=64 Score=40.45 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCcceEEEEecccCchH--------HHHHHHHhcCCCCCceEEEE
Q 007074 188 GRFTSILSVGIGGSALG--------PQFVAEALAPDNPPLKIRFI 224 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LG--------p~~v~~aL~~~~~~~~i~Fv 224 (619)
+.++.|++||-|++.+| ..-+..+|+.. +.+++.+
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~--G~~vi~v 47 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE--GYQVVLV 47 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc--CCEEEEE
Confidence 56889999999999765 23344666643 2344444
No 122
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=38.94 E-value=84 Score=33.44 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=35.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeecc
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMF 308 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~p 308 (619)
.-++|.+|++|+..+-+..+.. .| +....+++|-++...+..+|++.|+ +++.++
T Consensus 90 ~ri~vl~Sg~g~nl~al~~~~~-------~~-~~~~~i~~visn~~~~~~lA~~~gI-p~~~~~ 144 (286)
T PRK13011 90 PKVLIMVSKFDHCLNDLLYRWR-------IG-ELPMDIVGVVSNHPDLEPLAAWHGI-PFHHFP 144 (286)
T ss_pred ceEEEEEcCCcccHHHHHHHHH-------cC-CCCcEEEEEEECCccHHHHHHHhCC-CEEEeC
Confidence 4588999999998766543321 11 2345676664434457778999997 777665
No 123
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=38.67 E-value=64 Score=24.48 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=31.2
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
+-+|+..|.++ +.++.|||+.+|. ..-+|.+-|+.|-.+
T Consensus 4 R~~Il~~L~~~-------~~~~~el~~~l~~--s~~~vs~hL~~L~~~ 42 (47)
T PF01022_consen 4 RLRILKLLSEG-------PLTVSELAEELGL--SQSTVSHHLKKLREA 42 (47)
T ss_dssp HHHHHHHHTTS-------SEEHHHHHHHHTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCchhhHHHhccc--cchHHHHHHHHHHHC
Confidence 45788888773 8999999999998 667788888888765
No 124
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=38.09 E-value=44 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 559 EPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
-+.|..+||+.+|. ...++.++|+.|.+.+
T Consensus 7 ~~~s~~~la~~l~~--s~~tv~~~l~~L~~~g 36 (48)
T smart00419 7 LPLTRQEIAELLGL--TRETVSRTLKRLEKEG 36 (48)
T ss_pred eccCHHHHHHHHCC--CHHHHHHHHHHHHHCC
Confidence 47899999999998 6789999999999863
No 125
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=37.52 E-value=81 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC--CceEeecCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND--RALIAEGSC 599 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 599 (619)
+.-.+++..|++.. ..|..+||+++|. +..++-..++.|-.++ +|+.+.-|.
T Consensus 8 ~~D~~IL~~L~~d~------r~~~~eia~~lgl--S~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 8 DIDRRILRLLQEDA------RISNAELAERVGL--SPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHCC--CHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 34578999999875 6999999999998 7788999999999987 777766665
No 126
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.43 E-value=83 Score=27.18 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHH
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAH 585 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (619)
+.|.+|.+.|.+ -+.++..|-.+||+.+|.|...-+|-..|+.
T Consensus 2 ~f~~~V~~~l~~---IP~G~v~TYg~iA~~~g~p~~~RaVg~al~~ 44 (80)
T TIGR00589 2 PFQQRVWQALRT---IPYGETKSYGQLAARIGNPKAVRAVGGANGR 44 (80)
T ss_pred hHHHHHHHHHhC---CCCCCcCCHHHHHHHhCCCChHHHHHHHHHh
Confidence 357889999976 3689999999999999998888888777654
No 127
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=37.36 E-value=49 Score=28.69 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHH
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAH 585 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (619)
+.|.+|.+.+.+= +.|+-.|..+||+.+|.|.....|-.+|++
T Consensus 2 ~f~~~V~~~v~~I---P~G~v~TYg~iA~~~g~p~~ar~Vg~al~~ 44 (85)
T PF01035_consen 2 PFQRRVWEAVRQI---PYGKVTTYGEIARLLGRPKAARAVGSALAR 44 (85)
T ss_dssp HHHHHHHHHHTTS----TT-BEEHHHHHHHTT-TTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHcC---CCCceEeHHHHHHHHhhcccHHHHHHHhcc
Confidence 3577888888773 689999999999999998899998887765
No 128
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=37.00 E-value=95 Score=30.54 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEeecCCCCCcceeE
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKV 607 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (619)
..|++|+..|.+.. ...+.+.|+.|||+.+|.. ..-+|+..|+.|... |++ +.+.+...++++
T Consensus 6 ~~q~~iL~~l~~~~-~~~~~~~~~~ela~~~~~~-s~~tv~~~l~~L~~~--g~i-~~~~~~~~~~~~ 68 (199)
T TIGR00498 6 ARQQEVLDLIRAHI-ESTGYPPSIREIARAVGLR-SPSAAEEHLKALERK--GYI-ERDPGKPRAIRI 68 (199)
T ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCC-ChHHHHHHHHHHHHC--CCE-ecCCCCCCeEEe
Confidence 56888888888532 1234678999999999993 578999999999876 433 233344445544
No 129
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.70 E-value=1.5e+02 Score=26.39 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=53.8
Q ss_pred CchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCC-CCCHHHHHHHHHHHHHHHHhcccc
Q 007074 201 SALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKS-GGTPETRNGLLEVQKAFREAGLEF 278 (619)
Q Consensus 201 S~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKS-GtT~ETl~~~~~a~~~l~~~g~~~ 278 (619)
-.+|..++..+|+.. +.++.++ .++.++.+.+.+.+.+|+ +|++|-| +.+.+. ++...+.+++.+.
T Consensus 12 H~lG~~~~~~~l~~~--G~~V~~lg~~~~~~~l~~~~~~~~pd-----vV~iS~~~~~~~~~---~~~~i~~l~~~~~-- 79 (119)
T cd02067 12 HDIGKNIVARALRDA--GFEVIDLGVDVPPEEIVEAAKEEDAD-----AIGLSGLLTTHMTL---MKEVIEELKEAGL-- 79 (119)
T ss_pred hhHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC-----EEEEeccccccHHH---HHHHHHHHHHcCC--
Confidence 468999999999764 3578777 667788888888888774 6666665 444443 3444444554432
Q ss_pred CCEEEEEecC-CchhhhhHHHhCC
Q 007074 279 AKQGVAITQE-NSLLDNTVRIEGW 301 (619)
Q Consensus 279 ~~h~VaVT~~-~s~L~~~A~~~g~ 301 (619)
.+-.|.+... ...-.+.+++.|.
T Consensus 80 ~~~~i~vGG~~~~~~~~~~~~~G~ 103 (119)
T cd02067 80 DDIPVLVGGAIVTRDFKFLKEIGV 103 (119)
T ss_pred CCCeEEEECCCCChhHHHHHHcCC
Confidence 1233555542 1222245566665
No 130
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=36.39 E-value=1e+02 Score=23.33 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHH
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHM 586 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (619)
-.+|+..|.+. ...|..+||+.+|. +..+|..=++.|
T Consensus 5 D~~Il~~Lq~d------~r~s~~~la~~lgl--S~~~v~~Ri~rL 41 (42)
T PF13404_consen 5 DRKILRLLQED------GRRSYAELAEELGL--SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHH-------TTS-HHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCccHHHHHHHHCc--CHHHHHHHHHHh
Confidence 46788888886 38999999999999 555666555443
No 131
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=36.34 E-value=2.4e+02 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=8.6
Q ss_pred EEEEecccCchHHHHHHHHh
Q 007074 193 ILSVGIGGSALGPQFVAEAL 212 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL 212 (619)
||++|-| .+|-..+....
T Consensus 1 vvI~G~g--~~~~~i~~~L~ 18 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLK 18 (116)
T ss_dssp EEEES-S--HHHHHHHHHHH
T ss_pred eEEEcCC--HHHHHHHHHHH
Confidence 4565554 45555554433
No 132
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=35.53 E-value=64 Score=27.40 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=29.4
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+++..|.... ...+.|.+|||+.++. ....+-+|+..|..++
T Consensus 12 ~~l~~la~~~---~~~~~s~~eiA~~~~i--~~~~l~kil~~L~~~G 53 (83)
T PF02082_consen 12 RILLYLARHP---DGKPVSSKEIAERLGI--SPSYLRKILQKLKKAG 53 (83)
T ss_dssp HHHHHHHCTT---TSC-BEHHHHHHHHTS---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCC---CCCCCCHHHHHHHHCc--CHHHHHHHHHHHhhCC
Confidence 5556665543 2345999999999999 4566788888888764
No 133
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.23 E-value=74 Score=28.69 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCC---CchhhHHHHHHHHHhcCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHT---PEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 590 (619)
..+..|+++|.+.. .++|++||.+++.. .=..-|||..|.-|...+
T Consensus 8 ~~R~~Il~~l~~~~-----~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 8 PQRLAILELLKESP-----EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHHHHS-----SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44678899998875 59999999998863 234679999999999876
No 134
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=34.99 E-value=3.3e+02 Score=27.53 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=36.6
Q ss_pred EEEEecccCchHHHHHHHHhcCCCCCceEEEEeC-----CChhHHHHHHHhhCcCCCcEEEEEEcCC
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN-----TDPAGIDHQIAQLGPELASTLVVVISKS 254 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN-----~DP~~i~~~l~~L~~~l~~TLvIViSKS 254 (619)
|+|+|-.| .+|..++...+... -+++.++. .|++.+..+++..++ +.+|..+..+
T Consensus 2 ilv~G~tG-~iG~~l~~~l~~~g---~~v~~~~r~~~d~~~~~~~~~~~~~~~~---d~vi~~a~~~ 61 (287)
T TIGR01214 2 ILITGANG-QLGRELVQQLSPEG---RVVVALTSSQLDLTDPEALERLLRAIRP---DAVVNTAAYT 61 (287)
T ss_pred EEEEcCCC-HHHHHHHHHHHhcC---CEEEEeCCcccCCCCHHHHHHHHHhCCC---CEEEECCccc
Confidence 67777655 57888887776542 25555433 468888888887765 5777776654
No 135
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=34.54 E-value=77 Score=32.87 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDR 591 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (619)
+.+.+|+++|++. ..+++.|||+.++. +.++|..=|..|...+.
T Consensus 5 ~R~~~Il~~l~~~------~~~~~~ela~~l~v--S~~TiRRdL~~Le~~g~ 48 (252)
T PRK10906 5 QRHDAIIELVKQQ------GYVSTEELVEHFSV--SPQTIRRDLNDLAEQNK 48 (252)
T ss_pred HHHHHHHHHHHHc------CCEeHHHHHHHhCC--CHHHHHHHHHHHHHCCC
Confidence 5678999999886 48999999999988 88999999999999863
No 136
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=34.30 E-value=1.5e+02 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=24.3
Q ss_pred CCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 561 LTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
.|..+||+.++. ..++|.+.|..|+..+
T Consensus 26 ~~~~~la~~~~i--s~~~v~~~l~~L~~~G 53 (66)
T cd07377 26 PSERELAEELGV--SRTTVREALRELEAEG 53 (66)
T ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHHHCC
Confidence 459999999998 5799999999999863
No 137
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=34.28 E-value=69 Score=28.31 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHH
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAH 585 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (619)
.+.+|+.++.+ ..|..+||+.+|. ...+||.+.|-
T Consensus 39 ~R~~I~~ll~~--------G~S~~eIA~~LgI--SrsTIyRi~R~ 73 (88)
T TIGR02531 39 QRLQVAKMLKQ--------GKTYSDIEAETGA--STATISRVKRC 73 (88)
T ss_pred HHHHHHHHHHC--------CCCHHHHHHHHCc--CHHHHHHHHHh
Confidence 33566666655 4699999999999 78899997764
No 138
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=33.68 E-value=1.7e+02 Score=30.77 Aligned_cols=109 Identities=16% Similarity=0.344 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCC---CCceEEEEeC---CChhHHHHHH----HhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHH
Q 007074 203 LGPQFVAEALAPDN---PPLKIRFIDN---TDPAGIDHQI----AQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFR 272 (619)
Q Consensus 203 LGp~~v~~aL~~~~---~~~~i~FvdN---~DP~~i~~~l----~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~ 272 (619)
+|.-.+.+.+.+++ .++.++.+.. .+|+.++++. +..+| -++|++|--+.++=+. .+|+.|.
T Consensus 12 ig~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~p----df~I~isPN~~~PGP~----~ARE~l~ 83 (276)
T PF01993_consen 12 IGTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDP----DFVIVISPNAAAPGPT----KAREMLS 83 (276)
T ss_dssp -HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHHHHHHHH------SEEEEE-S-TTSHHHH----HHHHHHH
T ss_pred cchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHHHHhhCC----CEEEEECCCCCCCCcH----HHHHHHH
Confidence 56667778777763 3567777743 7788777655 34555 4789999999998764 4566665
Q ss_pred HhccccCCEEEEEec-CCchhhhhHHHhCCc-ceeeccCCCCCcchhhhHhhH
Q 007074 273 EAGLEFAKQGVAITQ-ENSLLDNTVRIEGWL-ARFPMFDWVGGRTSEMSAVGL 323 (619)
Q Consensus 273 ~~g~~~~~h~VaVT~-~~s~L~~~A~~~g~~-~~F~~pd~VGGRfSvlSaVGL 323 (619)
+. +...|.||+ ++.+-.+.-+++||. -+.+..+-||-|--++-++=+
T Consensus 84 ~~----~iP~IvI~D~p~~k~kd~l~~~g~GYIivk~DpMIGArREFLDP~EM 132 (276)
T PF01993_consen 84 AK----GIPCIVISDAPTKKAKDALEEEGFGYIIVKADPMIGARREFLDPVEM 132 (276)
T ss_dssp HS----SS-EEEEEEGGGGGGHHHHHHTT-EEEEETTS------TTT--HHHH
T ss_pred hC----CCCEEEEcCCCchhhHHHHHhcCCcEEEEecCccccccccccCHHHH
Confidence 54 456889998 433333444556663 244556778888888777764
No 139
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.44 E-value=2.1e+02 Score=28.98 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=54.5
Q ss_pred eEEEEeccc--CchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 192 SILSVGIGG--SALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 192 ~VVvIGIGG--S~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
.||+--+.| -.+|-.++...|+.. +.+++++ .++.++.+.+...+.+|+ +|.+|-+=+ -|+..++.+.
T Consensus 90 ~vvl~t~~gd~HdiG~~iv~~~l~~~--G~~Vi~LG~~vp~e~~v~~~~~~~~~-----~V~lS~~~~--~~~~~~~~~i 160 (213)
T cd02069 90 KIVLATVKGDVHDIGKNLVGVILSNN--GYEVIDLGVMVPIEKILEAAKEHKAD-----IIGLSGLLV--PSLDEMVEVA 160 (213)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhC--CCEEEECCCCCCHHHHHHHHHHcCCC-----EEEEccchh--ccHHHHHHHH
Confidence 354433443 479999999999864 4689998 678999999999999875 566655433 3456777777
Q ss_pred HHHHHhcc
Q 007074 269 KAFREAGL 276 (619)
Q Consensus 269 ~~l~~~g~ 276 (619)
+.|++.+.
T Consensus 161 ~~L~~~~~ 168 (213)
T cd02069 161 EEMNRRGI 168 (213)
T ss_pred HHHHhcCC
Confidence 77777654
No 140
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.94 E-value=2.4e+02 Score=31.09 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=17.2
Q ss_pred ceEEEEecccCchHHHHHHHHh
Q 007074 191 TSILSVGIGGSALGPQFVAEAL 212 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL 212 (619)
+.|.++|.|| ||-.++..|-
T Consensus 183 ~~vgI~GlGG--LGh~aVq~AK 202 (360)
T KOG0023|consen 183 KWVGIVGLGG--LGHMAVQYAK 202 (360)
T ss_pred cEEEEecCcc--cchHHHHHHH
Confidence 5799999999 9999987764
No 141
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=32.72 E-value=66 Score=34.15 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccC
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd 309 (619)
.-+.|.+|++|+..+.+..... .| .....+++|-++...+..+|++.|+ +++.++.
T Consensus 85 ~ki~vl~Sg~g~nl~~l~~~~~-------~g-~l~~~i~~visn~~~~~~~A~~~gI-p~~~~~~ 140 (280)
T TIGR00655 85 KRVAILVSKEDHCLGDLLWRWY-------SG-ELDAEIALVISNHEDLRSLVERFGI-PFHYIPA 140 (280)
T ss_pred cEEEEEEcCCChhHHHHHHHHH-------cC-CCCcEEEEEEEcChhHHHHHHHhCC-CEEEcCC
Confidence 4578899999998776543221 12 2345666665555567778999997 7776653
No 142
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=32.70 E-value=72 Score=24.26 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCCCC-CHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 557 PVEPL-TIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 557 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
++..+ |..+||+.+|. +..+|.+.|.+|...
T Consensus 16 ~~~~l~s~~~la~~~~v--s~~tv~~~l~~L~~~ 47 (60)
T smart00345 16 PGDKLPSERELAAQLGV--SRTTVREALSRLEAE 47 (60)
T ss_pred CCCcCcCHHHHHHHHCC--CHHHHHHHHHHHHHC
Confidence 44567 99999999999 679999999999975
No 143
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=32.61 E-value=73 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=21.6
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
.+|+++|.|| +|..++......--. +++.+|+
T Consensus 22 s~VlIiG~gg--lG~evak~La~~GVg--~i~lvD~ 53 (197)
T cd01492 22 ARILLIGLKG--LGAEIAKNLVLSGIG--SLTILDD 53 (197)
T ss_pred CcEEEEcCCH--HHHHHHHHHHHcCCC--EEEEEEC
Confidence 4699999999 899888775443221 4555544
No 144
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=32.15 E-value=98 Score=30.60 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=30.3
Q ss_pred ceEEEEecccCchHH-HHHHHHhcCCCCCceEEEE-eCCChhHH--HHHHHhhCcCC-CcEEEEEEcCC
Q 007074 191 TSILSVGIGGSALGP-QFVAEALAPDNPPLKIRFI-DNTDPAGI--DHQIAQLGPEL-ASTLVVVISKS 254 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp-~~v~~aL~~~~~~~~i~Fv-dN~DP~~i--~~~l~~L~~~l-~~TLvIViSKS 254 (619)
+.+|.|| ||++++| ..+.+.+.......+++++ .+-+++.+ .+-++.+..+. .-++.+++|..
T Consensus 104 ~~~vlIa-gG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 171 (231)
T cd06215 104 DKLLLLS-AGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEELARRHPNFRLHLILEQP 171 (231)
T ss_pred CcEEEEe-cCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHHHHHHHHHHHCCCeEEEEEEccC
Confidence 5688888 8888888 3333433322222345444 44444432 23344442111 12455566653
No 145
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.10 E-value=4.5e+02 Score=24.97 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=60.0
Q ss_pred chHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCC
Q 007074 202 ALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAK 280 (619)
Q Consensus 202 ~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~ 280 (619)
+.|...+..+|+.. +.+++++ -.+.|+.+-+...+-+++ ++-++|..|+|.| .++.+.+.|+++|...
T Consensus 15 diGk~iv~~~l~~~--GfeVi~LG~~v~~e~~v~aa~~~~ad----iVglS~l~~~~~~---~~~~~~~~l~~~gl~~-- 83 (134)
T TIGR01501 15 AVGNKILDHAFTNA--GFNVVNLGVLSPQEEFIKAAIETKAD----AILVSSLYGHGEI---DCKGLRQKCDEAGLEG-- 83 (134)
T ss_pred hHhHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC----EEEEecccccCHH---HHHHHHHHHHHCCCCC--
Confidence 68999999999764 4688888 557788887777666653 4556777777665 4666777788877632
Q ss_pred EEEEEecC----Cch---hhhhHHHhCCcceee
Q 007074 281 QGVAITQE----NSL---LDNTVRIEGWLARFP 306 (619)
Q Consensus 281 h~VaVT~~----~s~---L~~~A~~~g~~~~F~ 306 (619)
..|.+-.. ... .++..++.|+..+|.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCCEEEC
Confidence 23444431 111 122356678756664
No 146
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.92 E-value=48 Score=27.02 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCcCCC
Q 007074 498 RSVGALVALYERAVGIYASLVNINAY 523 (619)
Q Consensus 498 ~~LGaLialyE~av~~~g~L~gINpF 523 (619)
.++=.|+.+||..+ -+||||
T Consensus 35 envk~ll~lYE~Vs------~~iNPF 54 (55)
T PF05377_consen 35 ENVKDLLSLYEVVS------NQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHH------ccCCCC
Confidence 56678999999965 499999
No 147
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=31.82 E-value=59 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 560 PLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
++|-+|||+.+|. ..|+|-.+|..|...
T Consensus 2 ~mtr~diA~~lG~--t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 2 PMTRQDIADYLGL--TRETVSRILKKLERQ 29 (32)
T ss_dssp E--HHHHHHHHTS---HHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCC--cHHHHHHHHHHHHHc
Confidence 5788999999999 899999999888754
No 148
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.75 E-value=3.2e+02 Score=30.78 Aligned_cols=29 Identities=3% Similarity=0.094 Sum_probs=21.0
Q ss_pred ceEEEEechhchHhHHHHHHHHHHhhcCc
Q 007074 374 KDMVVLPYKDSLLLFSRYLQQLVMESLGK 402 (619)
Q Consensus 374 ~~~vllpY~~~L~~f~~wlqQL~mESlGK 402 (619)
....+=...+..+.+++|+.+-...+.|+
T Consensus 306 ~vTlmRtt~eE~~~~g~~ia~kLn~~~gp 334 (403)
T PF06792_consen 306 QVTLMRTTPEENRQLGEFIAEKLNRAKGP 334 (403)
T ss_pred ceeEeeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 33445557788899999998877776665
No 149
>PLN02735 carbamoyl-phosphate synthase
Probab=31.54 E-value=92 Score=39.29 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCcceEEEEecccCchH--------HHHHHHHhcCCCCCceEEEEe-------------------CCChhHHHHHHHhhC
Q 007074 188 GRFTSILSVGIGGSALG--------PQFVAEALAPDNPPLKIRFID-------------------NTDPAGIDHQIAQLG 240 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LG--------p~~v~~aL~~~~~~~~i~Fvd-------------------N~DP~~i~~~l~~L~ 240 (619)
..++.|++||-|...+| ...+..+|+.. +.++..++ -.|++.+.+++++-+
T Consensus 21 ~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~--G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~ 98 (1102)
T PLN02735 21 TDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKER 98 (1102)
T ss_pred cCCCEEEEECCCccccccceeecchHHHHHHHHHHc--CCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhC
Confidence 45789999999998775 44456677643 23444443 234455667666666
Q ss_pred cCCCcEEEEEE-----------------------cCCCCCHHHHHHH---HHHHHHHHHhccccCCEEEEEecCCchhhh
Q 007074 241 PELASTLVVVI-----------------------SKSGGTPETRNGL---LEVQKAFREAGLEFAKQGVAITQENSLLDN 294 (619)
Q Consensus 241 ~~l~~TLvIVi-----------------------SKSGtT~ETl~~~---~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~ 294 (619)
++ .++... -..|+..|++..+ ..+++.+++.|....+. ..+++. ..+.+
T Consensus 99 ~D---~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~-~~v~s~-eea~~ 173 (1102)
T PLN02735 99 PD---ALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPS-GIATTL-DECFE 173 (1102)
T ss_pred CC---EEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCe-eEeCCH-HHHHH
Confidence 53 333211 0235555555444 24455566667665443 344431 23444
Q ss_pred hHHHhC-CcceeeccCC
Q 007074 295 TVRIEG-WLARFPMFDW 310 (619)
Q Consensus 295 ~A~~~g-~~~~F~~pd~ 310 (619)
.+++.| | +++.=|..
T Consensus 174 ~~~~iG~y-PvVVKP~~ 189 (1102)
T PLN02735 174 IAEDIGEF-PLIIRPAF 189 (1102)
T ss_pred HHHHhCCC-CEEEEeCC
Confidence 555556 6 56544543
No 150
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=31.52 E-value=1.1e+02 Score=31.69 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+.+++|++.|++. ...++.|||+.+|. ..++|..-|+.|...+
T Consensus 5 ~R~~~Il~~l~~~------~~~~~~ela~~l~v--S~~TirRdL~~Le~~g 47 (251)
T PRK13509 5 QRHQILLELLAQL------GFVTVEKVIERLGI--SPATARRDINKLDESG 47 (251)
T ss_pred HHHHHHHHHHHHc------CCcCHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 5678899999886 48999999999998 7889999999998765
No 151
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=30.89 E-value=78 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=15.8
Q ss_pred CCCHHHHHHHcCCCchhhHHHHHHH
Q 007074 560 PLTIDEVAERCHTPEDIEMIYKIIA 584 (619)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (619)
..|..+||+.+|. ...+|+..|+
T Consensus 20 G~s~~~IA~~lg~--s~sTV~relk 42 (44)
T PF13936_consen 20 GMSIREIAKRLGR--SRSTVSRELK 42 (44)
T ss_dssp ---HHHHHHHTT----HHHHHHHHH
T ss_pred CCCHHHHHHHHCc--CcHHHHHHHh
Confidence 5899999999998 6778887775
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=30.88 E-value=4.7e+02 Score=27.60 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcC-CC-CCceEEEEeCCChhHHHHHHHh
Q 007074 161 IETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAP-DN-PPLKIRFIDNTDPAGIDHQIAQ 238 (619)
Q Consensus 161 i~~~l~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~-~~-~~~~i~FvdN~DP~~i~~~l~~ 238 (619)
+....+++.+=.+.+.+| .+..||++-|--|++= -.+..++-. +. .++++.-++.-|-..+.++++.
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGK--SSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG---------LPANNVLLWGARGTGK--SSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred HHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCH--HHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence 344445555544555543 5568899998887743 333333322 21 2578888877666677777777
Q ss_pred hCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCE-EEEEecCCc-hhhhhHHH-hCC-cceeeccCCCCCc
Q 007074 239 LGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQ-GVAITQENS-LLDNTVRI-EGW-LARFPMFDWVGGR 314 (619)
Q Consensus 239 L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h-~VaVT~~~s-~L~~~A~~-~g~-~~~F~~pd~VGGR 314 (619)
|.....+.++.+==-||..-|+ .++.++..|+-.....+++ +|..|+|-- .+.+.-.+ .+. ..-+.-.|.+--+
T Consensus 101 l~~~~~kFIlf~DDLsFe~~d~--~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEk 178 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLSFEEGDT--EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEK 178 (249)
T ss_pred HhcCCCCEEEEecCCCCCCCcH--HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHH
Confidence 7655468888888889998888 5677777654322233444 455677522 22222111 110 0123344555566
Q ss_pred chhhhHhhHHHHHhcCCCHHHHHHHHHHH
Q 007074 315 TSEMSAVGLLPAALQGIDVREMLAGASLM 343 (619)
Q Consensus 315 fSvlSaVGLlPaal~GiDi~~lL~GA~~m 343 (619)
-|+.--+|| -+.+.-+|-++.|+=.+..
T Consensus 179 lSLsDRFGL-~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 179 LSLSDRFGL-WLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred HhHHHhCCc-EEEecCCCHHHHHHHHHHH
Confidence 777777785 4555667777777644443
No 153
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=30.87 E-value=1e+02 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
..-+|+..|... .+.|+.|||+.+|. ..-++++=|+.|..-
T Consensus 11 ~R~~Il~~L~~~------~~~t~~ela~~l~~--~~~t~s~hL~~L~~a 51 (61)
T PF12840_consen 11 TRLRILRLLASN------GPMTVSELAEELGI--SQSTVSYHLKKLEEA 51 (61)
T ss_dssp HHHHHHHHHHHC------STBEHHHHHHHHTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC------CCCCHHHHHHHHCC--CHHHHHHHHHHHHHC
Confidence 356888888443 59999999999998 444578878877653
No 154
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=30.04 E-value=86 Score=30.19 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC--CceEeecC
Q 007074 535 AGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND--RALIAEGS 598 (619)
Q Consensus 535 a~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 598 (619)
+..+=+.-.+|++.|.+.. ..|..+||+++|. +.-++..-++.|-.++ +++.+.=|
T Consensus 9 ~~~lD~~D~~IL~~Lq~d~------R~s~~eiA~~lgl--S~~tv~~Ri~rL~~~GvI~~~~~~v~ 66 (164)
T PRK11169 9 GKDLDRIDRNILNELQKDG------RISNVELSKRVGL--SPTPCLERVRRLERQGFIQGYTALLN 66 (164)
T ss_pred hhhHHHHHHHHHHHhccCC------CCCHHHHHHHHCc--CHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 3445566789999998864 8999999999999 6678999999999987 55555444
No 155
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=29.44 E-value=2.6e+02 Score=27.61 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=55.2
Q ss_pred ceEEEEecccC--chHHHHHHHH-hcCCCCCceEEEEeC-CChhHH-HHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHH
Q 007074 191 TSILSVGIGGS--ALGPQFVAEA-LAPDNPPLKIRFIDN-TDPAGI-DHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265 (619)
Q Consensus 191 ~~VVvIGIGGS--~LGp~~v~~a-L~~~~~~~~i~FvdN-~DP~~i-~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~ 265 (619)
+.||+.|-|+. .-+.+....+ +........+. .+. ..+... .+.+...+- ...-++.--+|.+|.| |++
T Consensus 66 ~~iv~~Gg~~~~~~~~~rl~~~~~~~~~~~~~~v~-~s~~~~~~~~~~~~~~~~gv--~~~~i~~e~~s~~T~e---Na~ 139 (223)
T COG1434 66 DAIVVLGGGSRLTDHLIRLLEAARLAKILPISGVL-ESGGVIEIQATRRYLENLGV--PAERIILEDRSRNTVE---NAR 139 (223)
T ss_pred CEEEEcccceecHHHHHHHHHHHHHHHhcCCccee-ccCCcCccHHHHHHHHHcCC--CcccEEecCCCccHHH---HHH
Confidence 34555555542 2344444444 33332223344 333 332222 134444432 3566777888887655 677
Q ss_pred HHHHHHHHhccccCCEEEEEecCC--chhhhhHHHhCCcceeecc
Q 007074 266 EVQKAFREAGLEFAKQGVAITQEN--SLLDNTVRIEGWLARFPMF 308 (619)
Q Consensus 266 ~a~~~l~~~g~~~~~h~VaVT~~~--s~L~~~A~~~g~~~~F~~p 308 (619)
..+++++++ ..++++.||++= -.-...++..|. .+.+.|
T Consensus 140 ~s~~~l~~~---~~~~~ilVTs~~Hm~Ra~~~~~~~g~-~~~p~p 180 (223)
T COG1434 140 FSRRLLRTQ---GPESVILVTSPYHMPRALLLFRKLGI-SVIPYP 180 (223)
T ss_pred HHHHHHHHc---CCceEEEECCHHHHHHHHHHHHHCCC-cccccc
Confidence 778887776 368899999841 112233444554 454444
No 156
>PRK08264 short chain dehydrogenase; Validated
Probab=29.33 E-value=5.4e+02 Score=25.05 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=35.5
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCC-C--------------CceEEEE--eCCChhHHHHHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDN-P--------------PLKIRFI--DNTDPAGIDHQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~-~--------------~~~i~Fv--dN~DP~~i~~~l~~L~~~l~~TLvIViSK 253 (619)
+.|+|+| |.+.+|..++...++... . +.+++++ |-.|++.+.++++.+.+ -+.+|..+..
T Consensus 7 ~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASD--VTILVNNAGI 83 (238)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCC--CCEEEECCCc
Confidence 4577877 556788888877764321 0 0134443 55678888888776643 2555555544
No 157
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=29.33 E-value=50 Score=29.83 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhH
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTV 296 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A 296 (619)
-++||.|+||.|.--++.++ ....++++|.+....+++.
T Consensus 18 k~Ivv~T~sG~ta~~isk~R------------P~~pIiavt~~~~~~r~l~ 56 (117)
T PF02887_consen 18 KAIVVFTESGRTARLISKYR------------PKVPIIAVTPNESVARQLS 56 (117)
T ss_dssp SEEEEE-SSSHHHHHHHHT-------------TSSEEEEEESSHHHHHHGG
T ss_pred CEEEEECCCchHHHHHHhhC------------CCCeEEEEcCcHHHHhhhh
Confidence 47999999999876655443 3678999998655555554
No 158
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.21 E-value=2.7e+02 Score=33.69 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=21.2
Q ss_pred cceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 190 FTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 190 ~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
+++|.+||+|||+.++ +.++|... +.++...|.
T Consensus 4 ~~~i~viG~G~sG~sa--lA~~L~~~--G~~V~~sD~ 36 (809)
T PRK14573 4 SLFYHFIGIGGIGMSA--LAHILLDR--GYSVSGSDL 36 (809)
T ss_pred cceEEEEEecHHhHHH--HHHHHHHC--CCeEEEECC
Confidence 5679999999996554 34555543 245665554
No 159
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.03 E-value=1.7e+02 Score=32.69 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=21.2
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
+.|+++|+|+|+. ++.+.|.... ..+...|.
T Consensus 15 ~~i~v~G~G~sG~---a~a~~L~~~G--~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNI---PLIKFLVKLG--AKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHHH---HHHHHHHHCC--CEEEEECC
Confidence 4699999999865 5667776432 35666654
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=28.55 E-value=3.3e+02 Score=26.19 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=37.2
Q ss_pred ceEEEEecccCchHHHHHH---HHhcC--CCCCceEEEEeCCC---hhHHHHHHHhhCcCCCcEEEEEEcC
Q 007074 191 TSILSVGIGGSALGPQFVA---EALAP--DNPPLKIRFIDNTD---PAGIDHQIAQLGPELASTLVVVISK 253 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~---~aL~~--~~~~~~i~FvdN~D---P~~i~~~l~~L~~~l~~TLvIViSK 253 (619)
.++.++-.-|...+-..+. +.+.. .....++.++|++| ++....+++.++...++|.||.++.
T Consensus 64 ~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 64 PDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred CcEEEeccccCcCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 4566666656666666663 33322 22346888888865 4455667777754335677777653
No 161
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=28.45 E-value=94 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 559 EPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
.+.|..+|++.+|. ..-+|+++|++|...
T Consensus 9 ~~~~~~~i~~~l~i--s~~~v~~~l~~L~~~ 37 (66)
T smart00418 9 GELCVCELAEILGL--SQSTVSHHLKKLREA 37 (66)
T ss_pred CCccHHHHHHHHCC--CHHHHHHHHHHHHHC
Confidence 47899999999997 556799999999975
No 162
>PRK04217 hypothetical protein; Provisional
Probab=28.19 E-value=1.5e+02 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHH
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIA 584 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (619)
++.++.++.. +.+|.+|||+.+|. +..+|+.+|.
T Consensus 47 ereai~l~~~-------eGlS~~EIAk~LGI--S~sTV~r~L~ 80 (110)
T PRK04217 47 EFEALRLVDY-------EGLTQEEAGKRMGV--SRGTVWRALT 80 (110)
T ss_pred HHHHHHHHHH-------cCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 3455555543 37899999999999 6667777665
No 163
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=27.86 E-value=89 Score=29.57 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 559 EPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
.|+|+++||+.++. +--+||+.|+.|..-+
T Consensus 41 ~~~tvdelae~lnr--~rStv~rsl~~L~~~G 70 (126)
T COG3355 41 GPLTVDELAEILNR--SRSTVYRSLQNLLEAG 70 (126)
T ss_pred CCcCHHHHHHHHCc--cHHHHHHHHHHHHHcC
Confidence 59999999999998 6678999999998643
No 164
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=27.84 E-value=1.4e+02 Score=30.44 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEee
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAE 596 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (619)
+|++++.+.. .++|+.|||+++|.| --++|.+|.-|... |++.+
T Consensus 13 ~IL~~l~~~~-----~~~~l~eia~~lglp--ksT~~RlL~tL~~~--G~l~~ 56 (248)
T TIGR02431 13 AVIEAFGAER-----PRLTLTDVAEATGLT--RAAARRFLLTLVEL--GYVTS 56 (248)
T ss_pred HHHHHHhcCC-----CCCCHHHHHHHHCcC--HHHHHHHHHHHHHC--CCEEe
Confidence 6677776543 689999999999994 55899999999876 56544
No 165
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=27.82 E-value=1.6e+02 Score=26.95 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC-----CceEeecCCCCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND-----RALIAEGSCGSP 602 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 602 (619)
+..++|+.++..= ++++-.|-.+||+-+|.|...--|-+||.||.... |-|...|..+.|
T Consensus 6 ef~~~v~~vv~~I---P~GkV~TYGdIA~laG~p~~ARqVG~il~~l~~~s~lPWhRVvns~G~isl~ 70 (103)
T COG3695 6 EFTQRVLDVVAAI---PEGKVSTYGDIAKLAGLPRAARQVGRILKHLPEGSDLPWHRVVNSDGRISLP 70 (103)
T ss_pred HHHHHHHHHHHhC---CCCceeeHHHHHHHhCCChhHHHHHHHHhhCCCCCCCChhheecCCCcccCC
Confidence 3456777777663 57889999999999999999999999999998765 555577777766
No 166
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.74 E-value=76 Score=30.95 Aligned_cols=45 Identities=9% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCc---hhhHHHHHHHHHhcCC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPE---DIEMIYKIIAHMAAND 590 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 590 (619)
-+..|+++|.... +++|+++|.+++.... ..-|||..|+-|...+
T Consensus 27 qR~~IL~~l~~~~-----~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 27 QRLEVLRLMSLQP-----GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHhcC-----CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3557888887643 6999999999987632 5789999999998765
No 167
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.70 E-value=6.1e+02 Score=25.11 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=52.8
Q ss_pred eEEEEeccc--CchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHH
Q 007074 192 SILSVGIGG--SALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268 (619)
Q Consensus 192 ~VVvIGIGG--S~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~ 268 (619)
.||+.-++| -.+|-.++...|+.. +.++.++ .++.++.+.+...+.+|+ +|.+|-|-++ ++..++.+.
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~--G~~vi~lG~~~p~~~l~~~~~~~~~d-----~v~lS~~~~~--~~~~~~~~i 154 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEAN--GFEVIDLGRDVPPEEFVEAVKEHKPD-----ILGLSALMTT--TMGGMKEVI 154 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC-----EEEEeccccc--cHHHHHHHH
Confidence 465555554 479999999999764 3578887 678889999999888775 6777664333 344567777
Q ss_pred HHHHHhc
Q 007074 269 KAFREAG 275 (619)
Q Consensus 269 ~~l~~~g 275 (619)
+.+++.+
T Consensus 155 ~~lr~~~ 161 (201)
T cd02070 155 EALKEAG 161 (201)
T ss_pred HHHHHCC
Confidence 7676654
No 168
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=27.59 E-value=1e+02 Score=33.11 Aligned_cols=43 Identities=30% Similarity=0.509 Sum_probs=32.6
Q ss_pred EEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhh
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQL 239 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L 239 (619)
|+|.|-||| +|.+++.+.+... +-+++.+|. |...++++-.++
T Consensus 1 VLVTGa~GS-IGseL~rql~~~~--p~~lil~d~-~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGS-IGSELVRQLLRYG--PKKLILFDR-DENKLYELEREL 43 (293)
T ss_dssp EEEETTTSH-HHHHHHHHHHCCB---SEEEEEES--HHHHHHHHHHC
T ss_pred CEEEccccH-HHHHHHHHHHhcC--CCeEEEeCC-ChhHHHHHHHHH
Confidence 688999999 7999999988752 236787777 777777777777
No 169
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=27.38 E-value=2.4e+02 Score=28.19 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred ceEEEEecccCchHH-HHHHHHhcCCCCCceEEEE-eCCChh--HHHHHHHhhCcCCC-cEEEEEEcCC
Q 007074 191 TSILSVGIGGSALGP-QFVAEALAPDNPPLKIRFI-DNTDPA--GIDHQIAQLGPELA-STLVVVISKS 254 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp-~~v~~aL~~~~~~~~i~Fv-dN~DP~--~i~~~l~~L~~~l~-~TLvIViSKS 254 (619)
+++|.|+ ||+++.| ..+.+.+.......++.++ .+-+++ .+.+.++.+..+.. -+++.+.|..
T Consensus 110 ~~~v~ia-gG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~ 177 (238)
T cd06211 110 RPIIFIA-GGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLDEFEALEKDHPNFKYVPALSRE 177 (238)
T ss_pred CCEEEEe-CCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhccHHHHHHHHHhCCCeEEEEEECCC
Confidence 5788998 8899998 3333433322111233333 343443 22344444432111 2355556654
No 170
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=27.18 E-value=7.7e+02 Score=28.70 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcceEEEEecccCchHHHHHHHHhcC-CCCCceEEEEeCCChhHHHHHHHhhCcCCC
Q 007074 166 DAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAP-DNPPLKIRFIDNTDPAGIDHQIAQLGPELA 244 (619)
Q Consensus 166 ~~I~~fa~~i~~G~~~~~~g~~~~~~~VVvIGIGGS~LGp~~v~~aL~~-~~~~~~i~FvdN~DP~~i~~~l~~L~~~l~ 244 (619)
+.++++++++. ..+.++++|-|-++ | -+..-+|+= +. ..++-...--.+..+--+.-+++
T Consensus 449 ~~~~~~a~~~~------------~~~~~~~lG~G~~~-~-~A~E~aLKl~E~--~~i~a~~~~~~Ef~HGP~~~i~~--- 509 (604)
T PRK00331 449 EQIEELAEDFA------------DARNALFLGRGVDY-P-VALEGALKLKEI--SYIHAEGYAAGELKHGPIALIDE--- 509 (604)
T ss_pred HHHHHHHHHHh------------CCCcEEEEeCCCCH-H-HHHHHHHHHHHH--hhhcccccchhhhccCcHhhhcC---
Confidence 45666677664 35789999999653 2 222223310 00 01221111124455555555664
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccCCCCCcchhh
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEM 318 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvl 318 (619)
+|.|+++.-.+.+.|-+ ..+.+.+.+ .+.++++||+++. ..... + ...+.+|. +.+-++.+
T Consensus 510 ~~~vi~l~~~~~~~~~~---~~~~~~~~~----~g~~v~~I~~~~~---~~~~~-~-~~~~~~~~-~~~~~~pl 570 (604)
T PRK00331 510 GMPVVAIAPNDELYEKT---KSNIQEVKA----RGARVIVIADEGD---EVAEE-A-DDVIEVPE-VHELLAPL 570 (604)
T ss_pred CceEEEEEcCchHHHHH---HHHHHHHHh----CCCEEEEEEcCCc---ccccc-C-CceEECCC-CccchhHH
Confidence 55555554445544332 112222222 2688999987431 11111 1 24677774 55555544
No 171
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=27.00 E-value=1.1e+02 Score=28.56 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+++-.|.... ...+.|+++||+.++.| ...+-+||+.|...+
T Consensus 12 ~~l~~La~~~---~~~~~s~~~ia~~~~ip--~~~l~kil~~L~~~g 53 (135)
T TIGR02010 12 TAMLDLALNA---ETGPVTLADISERQGIS--LSYLEQLFAKLRKAG 53 (135)
T ss_pred HHHHHHHhCC---CCCcCcHHHHHHHHCcC--HHHHHHHHHHHHHCC
Confidence 3444554422 23589999999999995 455678888887664
No 172
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=26.49 E-value=79 Score=29.22 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
+|++||.|| +|..++......... ++.++|+
T Consensus 1 ~VliiG~Gg--lGs~ia~~L~~~Gv~--~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGG--LGSEIALNLARSGVG--KITLIDF 31 (143)
T ss_pred CEEEECCCH--HHHHHHHHHHHCCCC--EEEEEcC
Confidence 388999986 688877765544322 5666654
No 173
>PLN02828 formyltetrahydrofolate deformylase
Probab=26.09 E-value=1.2e+02 Score=32.03 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEE-ecCC----chhhhhHHHhCCcceeeccC
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAI-TQEN----SLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaV-T~~~----s~L~~~A~~~g~~~~F~~pd 309 (619)
.-+.|.+||+|+..+.+.... + .| +....+++| |.+. ..+.+.|++.|+ +++.+|.
T Consensus 71 ~riavlvSg~g~nl~~ll~~~------~-~g-~l~~eI~~ViSn~~~~~~a~~~~~A~~~gI-P~~~~~~ 131 (268)
T PLN02828 71 YKIAVLASKQDHCLIDLLHRW------Q-DG-RLPVDITCVISNHERGPNTHVMRFLERHGI-PYHYLPT 131 (268)
T ss_pred cEEEEEEcCCChhHHHHHHhh------h-cC-CCCceEEEEEeCCCCCCCchHHHHHHHcCC-CEEEeCC
Confidence 467889999999876643321 1 12 223456555 5432 367888999897 7776654
No 174
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.07 E-value=1.8e+02 Score=29.58 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEE-EEEecC-CchhhhhHHHhCCcceeeccCCCCCcchhhhHhhHH
Q 007074 247 LVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQG-VAITQE-NSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLL 324 (619)
Q Consensus 247 LvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~-VaVT~~-~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaVGLl 324 (619)
+.|.+|.+|+..|.+... +++.. ...++ +.||++ +-...+.|+++|+ .+|.++.. +|+-
T Consensus 2 i~vl~Sg~Gsn~~al~~~------~~~~~--l~~~i~~visn~~~~~~~~~A~~~gI-p~~~~~~~---~~~~------- 62 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDA------CLDGR--VNGDVVVVVTNKPGCGGAEYARENGI-PVLVYPKT---KGEP------- 62 (207)
T ss_pred EEEEEeCCChhHHHHHHH------HHcCC--CCeEEEEEEEeCCCChHHHHHHHhCC-CEEEeccc---cCCC-------
Confidence 578899999988774332 32222 23444 445663 4556788888897 77766543 1110
Q ss_pred HHHhcCCCHHHHHHHHHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHhHHHHHHHHHHhhcCccc
Q 007074 325 PAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEF 404 (619)
Q Consensus 325 Paal~GiDi~~lL~GA~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~f~~wlqQL~mESlGK~~ 404 (619)
-..+.+.+++.+.- .+....|+.-|... ++..+-+.+- ++-+
T Consensus 63 ---------------------------~~~~~~~~~~~l~~-----~~~Dliv~agy~~i---l~~~~l~~~~---~~~i 104 (207)
T PLN02331 63 ---------------------------DGLSPDELVDALRG-----AGVDFVLLAGYLKL---IPVELVRAYP---RSIL 104 (207)
T ss_pred ---------------------------cccchHHHHHHHHh-----cCCCEEEEeCcchh---CCHHHHhhCC---CCEE
Confidence 01122222332221 12333344445433 3333333221 2333
Q ss_pred cCCCCcccccceE-eecCCCCChhhHHHhhhccCCceeeEEEeecc
Q 007074 405 DLDGNRVNQGLTV-YGNKGSTDQHAYIQQLREGVHNFFATFIEVLR 449 (619)
Q Consensus 405 ~~dG~~v~~G~~~-~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~ 449 (619)
+.+ -++.| |.+.|.-..+.+-|.+..|.+..=+|+..+.+
T Consensus 105 NiH-----pSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~ 145 (207)
T PLN02331 105 NIH-----PALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDE 145 (207)
T ss_pred EEe-----CccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECC
Confidence 322 35555 66666556677778888999988888887753
No 175
>COG4261 Predicted acyltransferase [General function prediction only]
Probab=25.46 E-value=1.4e+02 Score=31.71 Aligned_cols=67 Identities=28% Similarity=0.288 Sum_probs=47.1
Q ss_pred cCchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHH
Q 007074 200 GSALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQK 269 (619)
Q Consensus 200 GS~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~ 269 (619)
||-||.-=+..||....+..++..+ ..-....+.++|+.++|+.+ ..++--+--.+||+..++++.+
T Consensus 121 gsHLGsfEv~RALatth~~~ki~~vvy~e~arr~n~~laa~nPe~a---~~li~vg~~~patai~~keald 188 (309)
T COG4261 121 GSHLGSFEVCRALATTHGYKKINAVVYSENARRFNQILAAMNPEAA---INLIPVGDIGPATAILLKEALD 188 (309)
T ss_pred hhhcccHHHHHHHHhcCCCceEEEEEeHHhHHHHHHHHHhhChhhc---cCcccccccCHHHHHHHHHHhc
Confidence 6899998889999887666666554 22236788999999999743 3334444455788877777654
No 176
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=25.07 E-value=3.2e+02 Score=28.54 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=28.0
Q ss_pred ceEEEEecccCchHH-HHHHHHhcCCCCCceEEEE-eCCChhHH--HHHHHhhC
Q 007074 191 TSILSVGIGGSALGP-QFVAEALAPDNPPLKIRFI-DNTDPAGI--DHQIAQLG 240 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp-~~v~~aL~~~~~~~~i~Fv-dN~DP~~i--~~~l~~L~ 240 (619)
+++|+|| ||+++.| ..+.+.+.... .+++++ .+-+++.+ .+-++.+.
T Consensus 99 ~~~llIa-GGiGiaPl~~l~~~l~~~~--~~v~l~~g~r~~~d~~~~~el~~~~ 149 (281)
T PRK06222 99 GTVVCVG-GGVGIAPVYPIAKALKEAG--NKVITIIGARNKDLLILEDEMKAVS 149 (281)
T ss_pred CeEEEEe-CcCcHHHHHHHHHHHHHCC--CeEEEEEecCCHHHhhcHHHHHhhC
Confidence 5789998 9999999 45556554332 245544 55555543 34444443
No 177
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=24.96 E-value=1.4e+02 Score=30.86 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+.+.+|+++|++.. ..++.|||+.+|. +.+||..=|+.|...+
T Consensus 5 eR~~~Il~~L~~~~------~v~v~eLa~~l~V--S~~TIRRDL~~Le~~g 47 (256)
T PRK10434 5 QRQAAILEYLQKQG------KTSVEELAQYFDT--TGTTIRKDLVILEHAG 47 (256)
T ss_pred HHHHHHHHHHHHcC------CEEHHHHHHHHCC--CHHHHHHHHHHHHHCC
Confidence 57889999999864 8999999999998 7899999999999876
No 178
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=24.93 E-value=5.4e+02 Score=26.41 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCcceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChh
Q 007074 188 GRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPA 230 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~ 230 (619)
...++|++||+|- ||-..+..-+.. ..++++.-+=.+||+
T Consensus 82 ~~~tnviiVG~Gn--lG~All~Y~f~~-~~~~~iv~~FDv~~~ 121 (211)
T COG2344 82 DKTTNVIIVGVGN--LGRALLNYNFSK-KNGMKIVAAFDVDPD 121 (211)
T ss_pred CcceeEEEEccCh--HHHHHhcCcchh-hcCceEEEEecCCHH
Confidence 5679999999996 444333332221 123555554445655
No 179
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.69 E-value=4.1e+02 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
+.|.++|+|||+++ +.++|... +.++...|.
T Consensus 8 ~~i~v~G~G~sG~s---~a~~L~~~--G~~v~~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLA---MARWCARH--GARLRVADT 38 (498)
T ss_pred CEEEEEeecHhHHH---HHHHHHHC--CCEEEEEcC
Confidence 46999999999764 55666543 246666664
No 180
>PF13730 HTH_36: Helix-turn-helix domain
Probab=24.66 E-value=2.7e+02 Score=21.36 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=31.9
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
+.|+-.|.....++...--|.+.||+.+|. ...+|.+.+..|...
T Consensus 8 ~~v~~~l~~~~~~~~~~~pS~~~la~~~g~--s~~Tv~~~i~~L~~~ 52 (55)
T PF13730_consen 8 KLVYLYLASYANKNGGCFPSQETLAKDLGV--SRRTVQRAIKELEEK 52 (55)
T ss_pred HHHHHHHHHhcCCCCCCCcCHHHHHHHHCc--CHHHHHHHHHHHHHC
Confidence 445555555444444444499999999999 488999999888653
No 181
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=24.30 E-value=2.3e+02 Score=33.83 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=49.5
Q ss_pred CcceEEEEecccCchHHHHHHHHhcCCCCCceEEEE--eCCC-hhHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHH
Q 007074 189 RFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFI--DNTD-PAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~Fv--dN~D-P~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~ 265 (619)
..++++++|-|-++ |-+.--||+= .++.++ ..+. .+..+--++-++++ ..+|++++..-+...+..+++
T Consensus 525 ~~~~~~~lGrG~~y--~~A~EgALKl----kE~syi~ae~y~~~EfkHGP~alid~~--~pVi~l~~~~~~~e~~~~~~~ 596 (670)
T PTZ00394 525 ESSSILVLGRGYDL--ATAMEAALKV----KELSYVHTEGIHSGELKHGPLALIDET--SPVLAMCTHDKHFGLSKSAVQ 596 (670)
T ss_pred CCCcEEEEeCCCCH--HHHHHHHHHH----HHHHHHHhCcCChhhccCCcHHHhcCC--ceEEEEEcCCchHHHHHHHHH
Confidence 35789999999664 2233333421 011111 1122 23333334456642 444555554333334555666
Q ss_pred HHHHHHHHhccccCCEEEEEecCCchhhhhHHHhCCcceeeccC
Q 007074 266 EVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFD 309 (619)
Q Consensus 266 ~a~~~l~~~g~~~~~h~VaVT~~~s~L~~~A~~~g~~~~F~~pd 309 (619)
+++++ +.++++||+++. .+.....+ ..+.+|.
T Consensus 597 evk~~--------g~~vi~I~~~~~--~~~~~~~~--~~i~vp~ 628 (670)
T PTZ00394 597 QVKAR--------GGAVVVFATEVD--AELKAAAS--EIVLVPK 628 (670)
T ss_pred HHHHc--------CCeEEEEECCCc--chhcccCC--cEEECCC
Confidence 66552 689999997532 11111112 4678885
No 182
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=24.10 E-value=1.4e+02 Score=27.36 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+++..|... +..+.|+.|||+++|. ..-.+.++|+.|...+
T Consensus 13 ~~l~~la~~----~~~~~s~~eia~~l~i--s~~~v~~~l~~L~~~G 53 (130)
T TIGR02944 13 LVLTTLAQN----DSQPYSAAEIAEQTGL--NAPTVSKILKQLSLAG 53 (130)
T ss_pred HHHHHHHhC----CCCCccHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 344555442 3468999999999998 5667889999998763
No 183
>PRK10494 hypothetical protein; Provisional
Probab=24.07 E-value=2.5e+02 Score=29.32 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=42.8
Q ss_pred hHHHHHHHhhCcCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEecCC--chhhhhHHHhCCcceeec
Q 007074 230 AGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQEN--SLLDNTVRIEGWLARFPM 307 (619)
Q Consensus 230 ~~i~~~l~~L~~~l~~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~~~--s~L~~~A~~~g~~~~F~~ 307 (619)
+.+.+.+..++- ...-+++-.+|-+|.|-..+.+ +++. .++++.||+.- -.-....+..|+ ++.|.
T Consensus 140 ~~~~~~l~~lGV--p~~~Ii~e~~s~nT~eNa~~~~---~~~~------~~~iiLVTsa~Hm~RA~~~f~~~Gl-~v~p~ 207 (259)
T PRK10494 140 EVGARVAQSLGV--PREDIITLDLPKDTEEEAAAVK---QAIG------DAPFLLVTSASHLPRAMIFFQQEGL-NPLPA 207 (259)
T ss_pred HHHHHHHHHcCC--CHHHeeeCCCCCCHHHHHHHHH---HHhC------CCCEEEECCHHHHHHHHHHHHHcCC-ceeec
Confidence 455666666543 2455678889999888665443 4331 35799999841 122234566787 88888
Q ss_pred cCC
Q 007074 308 FDW 310 (619)
Q Consensus 308 pd~ 310 (619)
|-+
T Consensus 208 Ptd 210 (259)
T PRK10494 208 PAN 210 (259)
T ss_pred CCc
Confidence 853
No 184
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=23.95 E-value=2e+02 Score=21.19 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.6
Q ss_pred CCCHHHHHHHcCCCchhhHHHHHHHHH
Q 007074 560 PLTIDEVAERCHTPEDIEMIYKIIAHM 586 (619)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (619)
..|..+||+.+|. ...+|+..++++
T Consensus 18 g~s~~eia~~l~i--s~~tv~~~~~~~ 42 (58)
T smart00421 18 GLTNKEIAERLGI--SEKTVKTHLSNI 42 (58)
T ss_pred CCCHHHHHHHHCC--CHHHHHHHHHHH
Confidence 5799999999998 667888877765
No 185
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=23.92 E-value=2e+02 Score=28.82 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC--CCceEee
Q 007074 539 LALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN--DRALIAE 596 (619)
Q Consensus 539 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 596 (619)
..+...+.++|=.+. +|+|+++||+.+|.+ ....|-.+|..|..+ +||+.++
T Consensus 7 ~~~~~~vEall~a~~-----~pls~~~L~~il~~~-~~~~~~~~l~~l~~~y~~rg~~L~ 60 (184)
T COG1386 7 MELKALIEALLFAGG-----EPLSLKELAEILGIV-SADAIIDALAELKEEYEDRGLELV 60 (184)
T ss_pred hhHHHHHHHHHHhcC-----CCCCHHHHHHHhCCC-chHHHHHHHHHHHHhhcCCCeeEE
Confidence 345567777776654 899999999999975 666667777777665 3776654
No 186
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=23.82 E-value=1.7e+02 Score=30.60 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 536 GEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 536 ~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
....+.+.+|+.+|++.. ..|+.|||+.+|. +.+||..=|..|...+
T Consensus 13 ~~~~eR~~~Il~~L~~~~------~vtv~eLa~~l~V--S~~TIRRDL~~Le~~G 59 (269)
T PRK09802 13 TGTSERREQIIQRLRQQG------SVQVNDLSALYGV--STVTIRNDLAFLEKQG 59 (269)
T ss_pred ccHHHHHHHHHHHHHHcC------CEeHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 334577889999998864 6999999999998 6799999999997765
No 187
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=23.74 E-value=1.6e+02 Score=30.60 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=63.3
Q ss_pred CcceEEEEecccCchH-HHHHHHHhcCC---------------CCCceEEEEeCCChh--------HHHHHHHhhCcCCC
Q 007074 189 RFTSILSVGIGGSALG-PQFVAEALAPD---------------NPPLKIRFIDNTDPA--------GIDHQIAQLGPELA 244 (619)
Q Consensus 189 ~~~~VVvIGIGGS~LG-p~~v~~aL~~~---------------~~~~~i~FvdN~DP~--------~i~~~l~~L~~~l~ 244 (619)
.+++|++||+|-.+.+ .+++.+.|... ..+++++.-.+.-|+ .+.+.++.+.+ .
T Consensus 39 ~~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~vv~~~g~~~~~~~i~v~~~~HP~Pd~~s~~aa~~il~~~~~~~~--~ 116 (238)
T PF13660_consen 39 KYGRIYVVGFGKAAAPMAEAAEEILGDRIVGGLVVVPYGHESPLPRIEVLEGGHPLPDENSVRAARRILELARELTE--D 116 (238)
T ss_dssp --SSEEEEEESTTHHHHHHHHHHHCGGCEEEEEEEEETT-----TTSEEEEE-SSS--HHHHHHHHHHHHHHCC--T--T
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHhcccccCceEEeCCcccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCC--C
Confidence 4678999999965544 35556665432 123455555554454 34444555554 3
Q ss_pred cEEEEEEcCCCCCH-------HHHHHHHHHHHHHHHhccc------cCCEEEEEec-CCchhhhhHHHhCCcceeeccCC
Q 007074 245 STLVVVISKSGGTP-------ETRNGLLEVQKAFREAGLE------FAKQGVAITQ-ENSLLDNTVRIEGWLARFPMFDW 310 (619)
Q Consensus 245 ~TLvIViSKSGtT~-------ETl~~~~~a~~~l~~~g~~------~~~h~VaVT~-~~s~L~~~A~~~g~~~~F~~pd~ 310 (619)
+.+++.+|-=|+-. =|+.-....-+.|.+.|.+ ..+|+ +. +||+|.+.+..... -+|.+-|-
T Consensus 117 dlvl~LiSGGgSALl~~P~~gisLed~~~~~~~Ll~sGa~I~EiN~VRkhL---S~vKGG~La~~~~~a~v-~sLilSDV 192 (238)
T PF13660_consen 117 DLVLVLISGGGSALLELPADGISLEDKQELTKLLLRSGADIHEINTVRKHL---SRVKGGRLARAAAPARV-VSLILSDV 192 (238)
T ss_dssp SEEEEEE-TTHHHHS--B-TT--HHHHHHHHHHHHHCT--HHHHHHHHHTT---BSSTTTHHHHCHTTSEE-EEEEE--S
T ss_pred CeEEEEecCChHHhhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH---hcCCchHHHHHhcCCeE-EEEEecCC
Confidence 67777776543311 1444455566666666643 23443 44 67888887744333 57888898
Q ss_pred CCCcchhh
Q 007074 311 VGGRTSEM 318 (619)
Q Consensus 311 VGGRfSvl 318 (619)
+|.+-++.
T Consensus 193 ~Gd~l~~I 200 (238)
T PF13660_consen 193 PGDDLSVI 200 (238)
T ss_dssp TT--TTTG
T ss_pred CCCChhhc
Confidence 88887764
No 188
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=23.67 E-value=1.4e+02 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHH
Q 007074 538 VLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKII 583 (619)
Q Consensus 538 il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (619)
|.+.+.+|.++|.+ . ..|+.+||+.+|. +..+|-..|
T Consensus 4 ~~~R~~~I~e~l~~-~------~~ti~dvA~~~gv--S~~TVsr~L 40 (80)
T TIGR02844 4 IEERVLEIGKYIVE-T------KATVRETAKVFGV--SKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHHHHH-C------CCCHHHHHHHhCC--CHHHHHHHh
Confidence 55678889999988 4 7899999999998 666666554
No 189
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.64 E-value=3.4e+02 Score=27.13 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=34.8
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEE---eCCChhHHHHHH----HhhCcCCCcEEEEEEc
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFI---DNTDPAGIDHQI----AQLGPELASTLVVVIS 252 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~Fv---dN~DP~~i~~~l----~~L~~~l~~TLvIViS 252 (619)
-+++++|.+|++..=..+.+.+..-.. .++.+ -|.+++.+.+-+ +.|...-.+|=++++|
T Consensus 34 ~~~iNLGfsG~~~le~~~a~~ia~~~a--~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 34 LDVINLGFSGNGKLEPEVADLIAEIDA--DLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -EEEEEE-TCCCS--HHHHHHHHHS----SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CCeEeeeecCccccCHHHHHHHhcCCC--CEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 479999999999999999999876533 45554 567777554433 2222111256667776
No 190
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=23.61 E-value=3.2e+02 Score=28.90 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=13.1
Q ss_pred ceEEEEecccCchHHHHHHH
Q 007074 191 TSILSVGIGGSALGPQFVAE 210 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~ 210 (619)
.+|+++|.|| +|..++..
T Consensus 31 s~VlVvG~GG--VGs~vae~ 48 (268)
T PRK15116 31 AHICVVGIGG--VGSWAAEA 48 (268)
T ss_pred CCEEEECcCH--HHHHHHHH
Confidence 5799999997 46665533
No 191
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=23.41 E-value=4.5e+02 Score=25.33 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=25.3
Q ss_pred eEEEEeCCChhHHHHHHHhhCcCCCcEEEEEEcCCC
Q 007074 220 KIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSG 255 (619)
Q Consensus 220 ~i~FvdN~DP~~i~~~l~~L~~~l~~TLvIViSKSG 255 (619)
+++..|=.|++.+.++++..++ +++|..+..++
T Consensus 45 ~~~~~dl~~~~~~~~~~~~~~~---d~vi~~a~~~~ 77 (236)
T PF01370_consen 45 EFVIGDLTDKEQLEKLLEKANI---DVVIHLAAFSS 77 (236)
T ss_dssp EEEESETTSHHHHHHHHHHHTE---SEEEEEBSSSS
T ss_pred EEEEeeccccccccccccccCc---eEEEEeecccc
Confidence 3444566789999999988865 68888888875
No 192
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=23.23 E-value=2.3e+02 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAN 589 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (619)
+|+..|.++ +.|.++||+++|. +..+|.+-++.|.+.
T Consensus 4 ~il~~L~~~-------~~~~~eLa~~l~v--S~~tv~~~l~~L~~~ 40 (69)
T TIGR00122 4 RLLALLADN-------PFSGEKLGEALGM--SRTAVNKHIQTLREW 40 (69)
T ss_pred HHHHHHHcC-------CcCHHHHHHHHCC--CHHHHHHHHHHHHHC
Confidence 567777763 6789999999998 668899999998653
No 193
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=22.80 E-value=1.3e+02 Score=27.42 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 559 EPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
.+.|.++||+.++.| ...+.+||+.|...+
T Consensus 24 ~~~s~~eia~~~~i~--~~~v~~il~~L~~~g 53 (132)
T TIGR00738 24 GPVSVKEIAERQGIS--RSYLEKILRTLRRAG 53 (132)
T ss_pred CcCcHHHHHHHHCcC--HHHHHHHHHHHHHCC
Confidence 589999999999994 677889999998753
No 194
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=22.63 E-value=4.1e+02 Score=25.70 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=31.0
Q ss_pred cceEEEEecccCchHHH-HHHHHhcCCCCCceEEEE-eCCChhH--HHHHHHhhCcCC-CcEEEEEEcC
Q 007074 190 FTSILSVGIGGSALGPQ-FVAEALAPDNPPLKIRFI-DNTDPAG--IDHQIAQLGPEL-ASTLVVVISK 253 (619)
Q Consensus 190 ~~~VVvIGIGGS~LGp~-~v~~aL~~~~~~~~i~Fv-dN~DP~~--i~~~l~~L~~~l-~~TLvIViSK 253 (619)
.+++|.|+ ||+++.|- .+.+.+.......+++++ .+-++.. +.+-++.+.... .-+++++.|.
T Consensus 97 ~~~~v~ia-~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 164 (223)
T cd00322 97 SGPVVLIA-GGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEELAKEGPNFRLVLALSR 164 (223)
T ss_pred CCcEEEEe-cCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEecC
Confidence 36789998 88888883 333433322112344443 4545542 233444442110 1355566665
No 195
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=22.59 E-value=79 Score=26.25 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCC---CchhhHHHHHHHHHhcCCCc
Q 007074 529 EAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHT---PEDIEMIYKIIAHMAANDRA 592 (619)
Q Consensus 529 E~gK~~a~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 592 (619)
+.|++.|..++..-.-+..+|.+-- ...+-.+.+-|.++-- ++.++.+...+.+...+|+|
T Consensus 2 ~~G~~~A~~i~~rH~~le~fl~~~l---gv~~~~a~~~A~~iEH~is~e~~~~l~~~l~~~~~~P~~ 65 (71)
T PF02742_consen 2 EEGREIAERILRRHRILEEFLVEVL---GVDEEEAEEEACRIEHVISPETIERLCKFLGFPETCPHG 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---T--HHHHHHHHHHHGCCS-HHHHHHHHHHTTCTSBETTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCcCcCC
Confidence 6799999999999999999996533 2233455666766654 34555666666666666665
No 196
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=22.58 E-value=2.3e+02 Score=27.95 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC--CceEeecCCCCCc
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND--RALIAEGSCGSPR 603 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 603 (619)
+|+.++.++. ..+|..|||++++. +..||-+-+.+|+.|+ .--..-|..+-|.
T Consensus 166 ~Vl~~~~~g~-----~g~s~~eIa~~l~i--S~~Tv~~~~~~~~~~~~~~~~~~~~~~grp~ 220 (225)
T PRK10046 166 AVRKLFKEPG-----VQHTAETVAQALTI--SRTTARRYLEYCASRHLIIAEIVHGKVGRPQ 220 (225)
T ss_pred HHHHHHHcCC-----CCcCHHHHHHHhCc--cHHHHHHHHHHHHhCCeEEEEeecCCCCCcC
Confidence 7888887653 46899999999999 7778888999999986 2222345556555
No 197
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=22.31 E-value=1.6e+02 Score=26.83 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHH
Q 007074 540 ALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHM 586 (619)
Q Consensus 540 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (619)
+.|++++.+--. +.+|+.|||+.+|. +--+||..+++.
T Consensus 20 ~kQ~~~l~lyy~-------eDlSlsEIAe~~~i--SRqaV~d~ikr~ 57 (101)
T PF04297_consen 20 EKQREILELYYE-------EDLSLSEIAEELGI--SRQAVYDSIKRA 57 (101)
T ss_dssp HHHHHHHHHHCT-------S---HHHHHHHCTS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-------cCCCHHHHHHHHCC--CHHHHHHHHHHH
Confidence 457777776655 58999999999998 566788887763
No 198
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.17 E-value=2.2e+02 Score=28.25 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+|+..|...+ ++|.++||+.+|. ....|=++|..|..++
T Consensus 26 ~Vl~~L~~~g------~~tdeeLA~~Lgi--~~~~VRk~L~~L~e~g 64 (178)
T PRK06266 26 EVLKALIKKG------EVTDEEIAEQTGI--KLNTVRKILYKLYDAR 64 (178)
T ss_pred HHHHHHHHcC------CcCHHHHHHHHCC--CHHHHHHHHHHHHHCC
Confidence 6777787753 8999999999999 8899999999999875
No 199
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=22.12 E-value=2.5e+02 Score=29.08 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC--CceEeecCCCCCcce
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND--RALIAEGSCGSPRSI 605 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 605 (619)
++|.+.++. +..++|++|+|+++|. +--++-+-|..|..|. ..=..-|..+-|-..
T Consensus 161 ~~i~~~~~~-----~~~~~Taeela~~~gi--SRvTaRRYLeyl~~~~~l~a~i~yG~vGRP~r~ 218 (224)
T COG4565 161 QKVREALKE-----PDQELTAEELAQALGI--SRVTARRYLEYLVSNGILEAEIHYGKVGRPERR 218 (224)
T ss_pred HHHHHHHhC-----cCCccCHHHHHHHhCc--cHHHHHHHHHHHHhcCeeeEEeeccccCCccee
Confidence 356666663 4589999999999999 5567889999999986 333455777777544
No 200
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.00 E-value=4e+02 Score=28.70 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=41.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEEEec---CCchhhhhH---HHhCCcc-eeeccCCCCC
Q 007074 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQ---ENSLLDNTV---RIEGWLA-RFPMFDWVGG 313 (619)
Q Consensus 245 ~TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~VaVT~---~~s~L~~~A---~~~g~~~-~F~~pd~VGG 313 (619)
...++++|-.|. .|+...++.+.+.+.+.|.....+.|..-. +-..|.++. .+.|... .+...+-+||
T Consensus 204 ~~~~~~~h~dh~-~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg 278 (321)
T TIGR03821 204 LQTVLVVHINHA-NEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQG 278 (321)
T ss_pred CcEEEEeeCCCh-HhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCC
Confidence 356677888887 488888888888888888776666665543 223344444 3345421 1233355665
No 201
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=21.88 E-value=8.6e+02 Score=26.59 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=46.1
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCC-------------------------CCceEEEEeCCChhHHHHHHHhhCcCCCc
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDN-------------------------PPLKIRFIDNTDPAGIDHQIAQLGPELAS 245 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~-------------------------~~~~i~FvdN~DP~~i~~~l~~L~~~l~~ 245 (619)
..|+|+|-.| .+|..++.+.+.... .+.++...|-.|++.+.++++.+... -+
T Consensus 61 ~kVLVtGatG-~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~-~D 138 (390)
T PLN02657 61 VTVLVVGATG-YIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP-VD 138 (390)
T ss_pred CEEEEECCCc-HHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC-Cc
Confidence 3578877543 467777766553210 11234445777888888888765210 14
Q ss_pred EEEE-EEcCCCCCHHHH-HHHHHHHHHH---HHhccccCCEEEEEec
Q 007074 246 TLVV-VISKSGGTPETR-NGLLEVQKAF---REAGLEFAKQGVAITQ 287 (619)
Q Consensus 246 TLvI-ViSKSGtT~ETl-~~~~~a~~~l---~~~g~~~~~h~VaVT~ 287 (619)
.+|. +.+.++...+.. .++...++.+ ++.| .+|+|.+++
T Consensus 139 ~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~g---v~r~V~iSS 182 (390)
T PLN02657 139 VVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVG---AKHFVLLSA 182 (390)
T ss_pred EEEECCccCCCCCccchhhHHHHHHHHHHHHHHcC---CCEEEEEee
Confidence 5554 344444322211 1222222222 2222 367887776
No 202
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=21.81 E-value=2e+02 Score=28.09 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHH----HhcCCCceEeec
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAH----MAANDRALIAEG 597 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 597 (619)
.|+++|=... +|+|+++||+.++. .+.|-.+|.+ ...++||+.+.-
T Consensus 2 ~iEAlLF~s~-----~pvs~~~La~~l~~---~~~v~~~l~~L~~~y~~~~~gl~l~~ 51 (159)
T PF04079_consen 2 IIEALLFASG-----EPVSIEELAEILGS---EDEVEEALEELQEEYNEEDRGLELVE 51 (159)
T ss_dssp HHHHHHHH-S-----S-B-HHHHHHHCT----HHHHHHHHHHHHHHHHHCT-SEEEEE
T ss_pred hhHhhHHHcC-----CCCCHHHHHHHhCC---HHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 3566665543 69999999999993 4444444444 445678887653
No 203
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=21.80 E-value=2.3e+02 Score=21.86 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+..|+..+.+. +.+..|||+.+|. ..-+|+..|+.|...+
T Consensus 9 ~~~il~~l~~~-------~~~~~ei~~~~~i--~~~~i~~~l~~L~~~g 48 (78)
T cd00090 9 RLRILRLLLEG-------PLTVSELAERLGL--SQSTVSRHLKKLEEAG 48 (78)
T ss_pred HHHHHHHHHHC-------CcCHHHHHHHHCc--CHhHHHHHHHHHHHCC
Confidence 45667776663 3899999999998 5678899999997753
No 204
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=21.72 E-value=1.9e+02 Score=28.28 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHH
Q 007074 538 VLALQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHM 586 (619)
Q Consensus 538 il~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (619)
+...+.+++.+..- ..+|.+|||+.+|. +.-+|.+-|+.+
T Consensus 136 l~~~~~~~v~l~~~-------~Gls~~EIA~~lgi--S~~tV~r~l~~a 175 (185)
T PF07638_consen 136 LDPRQRRVVELRFF-------EGLSVEEIAERLGI--SERTVRRRLRRA 175 (185)
T ss_pred cCHHHHHHHHHHHH-------CCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 33456677777654 36999999999999 556666666543
No 205
>PRK08374 homoserine dehydrogenase; Provisional
Probab=21.68 E-value=7.7e+02 Score=26.71 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=38.5
Q ss_pred CCEEEEEec-----CCchhhhhHHHhCCcceeeccCCCCCcchhhhHh-------------h--------HHHHHhcCCC
Q 007074 279 AKQGVAITQ-----ENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAV-------------G--------LLPAALQGID 332 (619)
Q Consensus 279 ~~h~VaVT~-----~~s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaV-------------G--------LlPaal~GiD 332 (619)
++|+|..+. ....|.++|+++|. .|-+...|+|.-=+...+ | +|--+-.|.+
T Consensus 115 G~~VVtanK~~la~~~~el~~la~~~~~--~~~~ea~v~~GiPii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~g~~ 192 (336)
T PRK08374 115 GKSVVTSNKPPIAFHYDELLDLANERNL--PYLFEATVMAGTPIIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQGKT 192 (336)
T ss_pred CCcEEECCHHHHHhCHHHHHHHHHHcCC--eEEEeccccccCCchHHHHhhccccceEEEEEEEechHHHHHHHhhCCCC
Confidence 678774443 13467788888764 566778787643333333 1 1221225788
Q ss_pred HHHHHHHHHHH
Q 007074 333 VREMLAGASLM 343 (619)
Q Consensus 333 i~~lL~GA~~m 343 (619)
|++.|.-|+++
T Consensus 193 f~eal~eAq~~ 203 (336)
T PRK08374 193 FEEALKEAQTL 203 (336)
T ss_pred HHHHHHHHHHc
Confidence 99999888764
No 206
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=21.59 E-value=4.3e+02 Score=26.44 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=21.4
Q ss_pred ceEEEEeCCChhHHHHHHHh-----hCcCCCcEEEEEEcCCCCCHHHH
Q 007074 219 LKIRFIDNTDPAGIDHQIAQ-----LGPELASTLVVVISKSGGTPETR 261 (619)
Q Consensus 219 ~~i~FvdN~DP~~i~~~l~~-----L~~~l~~TLvIViSKSGtT~ETl 261 (619)
++..++ |+||..+.++... +.+ +.++---+-+|+..+.-
T Consensus 55 ~r~i~i-Dtd~~~l~~i~~~~~~~l~~~---~~~~~~~~g~g~n~~~G 98 (216)
T PF00091_consen 55 PRAIAI-DTDPKVLDEIRASPKRSLFDP---NNLISGQEGSGNNWAVG 98 (216)
T ss_dssp EEEEEE-ESSHHHHHHHHTSEETTESCG---GGEEETSSTSTTSHHHH
T ss_pred cccccc-ccccccccccccccccccccc---ccccccccccccccccc
Confidence 455666 5599998886642 222 33333233466666543
No 207
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=21.49 E-value=5.3e+02 Score=28.67 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=19.1
Q ss_pred EEEEecccCchHHHHHHHHhcCCCCCceEEEEeC
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN 226 (619)
|-.|||||++..+.| ..|... +..+...|.
T Consensus 2 ~hfigigG~gm~~la--~~l~~~--G~~V~~~D~ 31 (448)
T TIGR01081 2 IHILGICGTFMGGLA--MIAKQL--GHEVTGSDA 31 (448)
T ss_pred EEEEEECHHhHHHHH--HHHHhC--CCEEEEECC
Confidence 568999999665544 555543 346665554
No 208
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=21.10 E-value=2.8e+02 Score=28.34 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCCCC--CCCCCCcceEEEEecc-cCchHHHHHHHHhcCCCCCceEEEE------eCCChhHHHHH
Q 007074 165 LDAVRKFADEVVSGKIKPP--SSPEGRFTSILSVGIG-GSALGPQFVAEALAPDNPPLKIRFI------DNTDPAGIDHQ 235 (619)
Q Consensus 165 l~~I~~fa~~i~~G~~~~~--~g~~~~~~~VVvIGIG-GS~LGp~~v~~aL~~~~~~~~i~Fv------dN~DP~~i~~~ 235 (619)
-.+|+++|.+|.+ .+++. ++ + +.+++|||- |+..=..-+.+.|....-++++-|+ +++-...--.+
T Consensus 34 ~~~i~~LA~~I~~-~~~~~~~~~--~--~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i 108 (211)
T PTZ00271 34 WAATAKCAKKIAE-DYRSFKLTT--E--NPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRM 108 (211)
T ss_pred HHHHHHHHHHHHH-HhhhccccC--C--CCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEE
Confidence 4577778888863 11111 00 0 246677775 4443334445666532123566666 22221111111
Q ss_pred HHhhCcCC-CcEEEEE--EcCCCCCHHHHHHHHHHHHHHHHhc
Q 007074 236 IAQLGPEL-ASTLVVV--ISKSGGTPETRNGLLEVQKAFREAG 275 (619)
Q Consensus 236 l~~L~~~l-~~TLvIV--iSKSGtT~ETl~~~~~a~~~l~~~g 275 (619)
...+..++ .+.++|| |--||.|. +.++++|++++
T Consensus 109 ~~~~~~~i~gk~VLIVDDIvDTG~TL------~~v~~~l~~~~ 145 (211)
T PTZ00271 109 LLDVRDSVENRHILIVEDIVDSAITL------QYLMRFMLAKK 145 (211)
T ss_pred ecCCCCCCCCCEEEEEecccCCHHHH------HHHHHHHHhcC
Confidence 11222122 2555555 67888875 44566666654
No 209
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=21.02 E-value=2.2e+02 Score=29.41 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEee
Q 007074 543 KRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAE 596 (619)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (619)
=+|+.+|.+.. .++|+.|||+++|. .--++|.+|.-|... |++.+
T Consensus 14 l~iL~~l~~~~-----~~ls~~eia~~lgl--~kstv~RlL~tL~~~--g~v~~ 58 (263)
T PRK09834 14 LMVLRALNRLD-----GGATVGLLAELTGL--HRTTVRRLLETLQEE--GYVRR 58 (263)
T ss_pred HHHHHHHHhcC-----CCCCHHHHHHHHCc--CHHHHHHHHHHHHHC--CCEEE
Confidence 36667776543 46999999999998 566899999999986 55543
No 210
>PRK06474 hypothetical protein; Provisional
Probab=21.00 E-value=2e+02 Score=28.38 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 542 QKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 542 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+.+|+.+|.... .++|+.+|++.++. -..-+||..|+-|...+
T Consensus 13 R~~Il~~L~~~~-----~~~ta~el~~~l~~-is~aTvYrhL~~L~e~G 55 (178)
T PRK06474 13 RMKICQVLMRNK-----EGLTPLELVKILKD-VPQATLYRHLQTMVDSG 55 (178)
T ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHhcC-CCHHHHHHHHHHHHHCC
Confidence 567888887753 35999999999963 45679999999999864
No 211
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=20.88 E-value=5.3e+02 Score=25.45 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=23.0
Q ss_pred ceEEEEecccCchHH-HHHHHHhcCCCCCceEEEE-eCCChhHH
Q 007074 191 TSILSVGIGGSALGP-QFVAEALAPDNPPLKIRFI-DNTDPAGI 232 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp-~~v~~aL~~~~~~~~i~Fv-dN~DP~~i 232 (619)
+++|.|| ||++++| ..+.+.+.......+++++ .+-+++.+
T Consensus 101 ~~~llia-gG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~ 143 (227)
T cd06213 101 APILCIA-GGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDL 143 (227)
T ss_pred CcEEEEe-cccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHh
Confidence 5688888 8899999 3333443322222245544 55556544
No 212
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=20.86 E-value=43 Score=36.21 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 007074 156 FLKSQIETTLDAVRKFADEVV 176 (619)
Q Consensus 156 ~~~~~i~~~l~~I~~fa~~i~ 176 (619)
..+.++++.+.++.+.|++|.
T Consensus 69 ~~k~~Le~~I~kL~~lAd~id 89 (313)
T PF05461_consen 69 QLKEELEEHIRKLRALADEID 89 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888877664
No 213
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=20.76 E-value=2.6e+02 Score=20.80 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=20.7
Q ss_pred CCCHHHHHHHcCCCchhhHHHHHHHHHh
Q 007074 560 PLTIDEVAERCHTPEDIEMIYKIIAHMA 587 (619)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (619)
..|..+||+.++. ...+|+..++++-
T Consensus 15 ~~s~~eia~~l~~--s~~tv~~~~~~~~ 40 (57)
T cd06170 15 GKTNKEIADILGI--SEKTVKTHLRNIM 40 (57)
T ss_pred CCCHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 5799999999998 5667877776653
No 214
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.69 E-value=9.5e+02 Score=25.38 Aligned_cols=168 Identities=21% Similarity=0.185 Sum_probs=88.5
Q ss_pred eEEEEecccCchHHHHHHHHhcCCCCCceEEEEeCCChhHHHHHHHhhCcC----------CCcEEEEEEcCCCCCHHHH
Q 007074 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPE----------LASTLVVVISKSGGTPETR 261 (619)
Q Consensus 192 ~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~FvdN~DP~~i~~~l~~L~~~----------l~~TLvIViSKSGtT~ETl 261 (619)
.|.+||.|.- | +.+.+.+.+...+.++.++-..|++...++.+.+... .-+.+|=.+|-
T Consensus 2 ~vgiVGcGaI--G-~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-------- 70 (255)
T COG1712 2 KVGIVGCGAI--G-KFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-------- 70 (255)
T ss_pred eEEEEeccHH--H-HHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH--------
Confidence 3778898873 4 4455777655344677777666888877766666541 01233333331
Q ss_pred HHHHHHHHHHHHhccccCCEEEEEec-----CC--chhhhhHHHhCCcceeeccCCCCCcchhhhHh-h---------HH
Q 007074 262 NGLLEVQKAFREAGLEFAKQGVAITQ-----EN--SLLDNTVRIEGWLARFPMFDWVGGRTSEMSAV-G---------LL 324 (619)
Q Consensus 262 ~~~~~a~~~l~~~g~~~~~h~VaVT~-----~~--s~L~~~A~~~g~~~~F~~pd~VGGRfSvlSaV-G---------Ll 324 (619)
+.+++...+. +..+.+++.++- ++ +.|..+|+..|. ++|-...-|||==-+-|+- | --
T Consensus 71 ---~Av~e~~~~~-L~~g~d~iV~SVGALad~~l~erl~~lak~~~~-rv~~pSGAiGGlD~l~aar~g~i~~V~lttrK 145 (255)
T COG1712 71 ---EAVREYVPKI-LKAGIDVIVMSVGALADEGLRERLRELAKCGGA-RVYLPSGAIGGLDALAAARVGGIEEVVLTTRK 145 (255)
T ss_pred ---HHHHHHhHHH-HhcCCCEEEEechhccChHHHHHHHHHHhcCCc-EEEecCccchhHHHHHHhhcCCeeEEEEEeec
Confidence 2233332221 123566776653 11 345667777664 5666666677632222221 1 12
Q ss_pred HHHhcCCCHHH----HHHH-HHHHhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhc
Q 007074 325 PAALQGIDVRE----MLAG-ASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDS 384 (619)
Q Consensus 325 Paal~GiDi~~----lL~G-A~~md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~ 384 (619)
|-+-.|+|+++ +.+| |+++-+.| |-.-|.|+.+.++.. + .+.+|-+.-++.
T Consensus 146 pp~~lg~dl~~~ktVlfeG~a~eA~k~F---PkNiNVAaTlsLA~~----~--e~v~V~lvaDP~ 201 (255)
T COG1712 146 PPAELGIDLEDKKTVLFEGSASEAVKKF---PKNINVAATLSLAGG----F--ERVKVRLVADPE 201 (255)
T ss_pred ChHHhCcCcccCceEEEeccHHHHHHhC---cccccHHHHHHhhcc----c--cceEEEEEeCch
Confidence 33445666653 1233 34455555 445688888877542 1 445565555544
No 215
>PRK00215 LexA repressor; Validated
Probab=20.64 E-value=2.6e+02 Score=27.56 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCC
Q 007074 541 LQKRVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAAND 590 (619)
Q Consensus 541 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
.|..|++.|.+.. .+.+.+.|+.|||+++|. ...-+++.+|.+|..++
T Consensus 5 ~q~~il~~i~~~~-~~~~~~~s~~ela~~~~~-~~~~tv~~~l~~L~~~g 52 (205)
T PRK00215 5 RQQEILDFIRDHI-EETGYPPSRREIADALGL-RSPSAVHEHLKALERKG 52 (205)
T ss_pred HHHHHHHHHHHHH-HHhCCCCCHHHHHHHhCC-CChHHHHHHHHHHHHCC
Confidence 4667777776421 012367899999999997 34568899999998763
No 216
>PRK02399 hypothetical protein; Provisional
Probab=20.54 E-value=1e+03 Score=26.99 Aligned_cols=132 Identities=14% Similarity=0.220 Sum_probs=68.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhccccCCEEEE-EecCCc-hhhhhHHHhCCcceeecc------CCCCC----
Q 007074 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVA-ITQENS-LLDNTVRIEGWLARFPMF------DWVGG---- 313 (619)
Q Consensus 246 TLvIViSKSGtT~ETl~~~~~a~~~l~~~g~~~~~h~Va-VT~~~s-~L~~~A~~~g~~~~F~~p------d~VGG---- 313 (619)
--.|.+|-=|.|. -+...+++.|++.|.+. +|. -|..|| .+++++++.-+.-++.+- ..+||
T Consensus 186 kp~Ig~TmfGvTt---p~v~~~~~~Le~~GyEv---lVFHATG~GGraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sa 259 (406)
T PRK02399 186 KPLIGLTMFGVTT---PCVQAAREELEARGYEV---LVFHATGTGGRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAA 259 (406)
T ss_pred CceEEEecCCCcH---HHHHHHHHHHHhCCCeE---EEEcCCCCchHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccC
Confidence 3456666667775 56677788888877441 222 244444 678888763332345442 34566
Q ss_pred ---cchhhhHhhHHHHHh-c-CCCHHHHHHHHHH-HhHHhcCCCcCCCHHHHHHHHHHHHhcCCCCceEEEEechhchHh
Q 007074 314 ---RTSEMSAVGLLPAAL-Q-GIDVREMLAGASL-MDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLL 387 (619)
Q Consensus 314 ---RfSvlSaVGLlPaal-~-GiDi~~lL~GA~~-md~~~~~~~l~~N~a~llAl~~~~~~~~~g~~~~vllpY~~~L~~ 387 (619)
|+..-..-|+ |..+ . ++|+-.| |+.+ +.++|+..+ ++.+ +.....+=...+..+.
T Consensus 260 gp~Rl~Aa~~~gI-P~Vvs~GalDmVnF--g~~~tvPe~f~~R~-------------~~~H---Np~vTlmRTt~eE~~~ 320 (406)
T PRK02399 260 GPDRLEAAARTGI-PQVVSPGALDMVNF--GAPDTVPEKFRGRL-------------LYKH---NPQVTLMRTTPEENRQ 320 (406)
T ss_pred CccHHHHHHHcCC-CEEecCCceeeeec--CCcccccHhhcCCc-------------ceec---CCcceeeecCHHHHHH
Confidence 5555544552 4332 1 2231111 1111 333333222 1111 2233344456777888
Q ss_pred HHHHHHHHHHhhcCc
Q 007074 388 FSRYLQQLVMESLGK 402 (619)
Q Consensus 388 f~~wlqQL~mESlGK 402 (619)
+++|+.+-...+.|+
T Consensus 321 ~g~~ia~kLn~a~gp 335 (406)
T PRK02399 321 IGRWIAEKLNRAKGP 335 (406)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999998888777665
No 217
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.49 E-value=2.5e+02 Score=31.45 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=37.0
Q ss_pred ceEEEEecccCchHHHHHHHHhcCCCCCceEEEEe-CCChhHHHHHHHhhCcC
Q 007074 191 TSILSVGIGGSALGPQFVAEALAPDNPPLKIRFID-NTDPAGIDHQIAQLGPE 242 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~Fvd-N~DP~~i~~~l~~L~~~ 242 (619)
++|+++|.-|| +|.+.+ +++.......++.-+. +.+.+.+.+..++.+|+
T Consensus 2 k~VaILGsTGS-IG~~tL-~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~ 52 (385)
T PRK05447 2 KRITILGSTGS-IGTQTL-DVIRRNPDRFRVVALSAGKNVELLAEQAREFRPK 52 (385)
T ss_pred ceEEEEcCChH-HHHHHH-HHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 46999998887 588876 5554433345777775 77899999999999884
No 218
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=20.47 E-value=2.7e+02 Score=26.39 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=35.2
Q ss_pred EEEEecccCchHHHHHHHHhcCCCCCceEEEE-eCCChhHHHHHHHhhCcC
Q 007074 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFI-DNTDPAGIDHQIAQLGPE 242 (619)
Q Consensus 193 VVvIGIGGS~LGp~~v~~aL~~~~~~~~i~Fv-dN~DP~~i~~~l~~L~~~ 242 (619)
|+++|--|| +|-+.+ +.++...+..++.-+ .+-+.+.+.+..+++.|+
T Consensus 1 i~ILGsTGS-IG~qtL-dVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~ 49 (129)
T PF02670_consen 1 IAILGSTGS-IGTQTL-DVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPK 49 (129)
T ss_dssp EEEESTTSH-HHHHHH-HHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-S
T ss_pred CEEEcCCcH-HHHHHH-HHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 578999999 588887 445444444677766 667788999999999985
No 219
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=20.43 E-value=1.4e+02 Score=30.57 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=33.1
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEee
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAE 596 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (619)
+|+++|.+. .++|+.|||+++|. .--+++.+|+-|... |++.+
T Consensus 18 ~IL~~l~~~------~~l~l~eia~~lgl--~kstv~Rll~tL~~~--G~l~~ 60 (257)
T PRK15090 18 GILQALGEE------REIGITELSQRVMM--SKSTVYRFLQTMKTL--GYVAQ 60 (257)
T ss_pred HHHHHhhcC------CCCCHHHHHHHHCc--CHHHHHHHHHHHHHC--CCEEE
Confidence 566666542 37999999999999 456899999999875 66554
No 220
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.40 E-value=1.1e+03 Score=25.67 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCcceEEEEecccCchHHHHHHHHhcCCCC--Cc---eEEEEeCCChhHHHHHHHhhCcCCC-cEEEEEEcCCCCCHHHH
Q 007074 188 GRFTSILSVGIGGSALGPQFVAEALAPDNP--PL---KIRFIDNTDPAGIDHQIAQLGPELA-STLVVVISKSGGTPETR 261 (619)
Q Consensus 188 ~~~~~VVvIGIGGS~LGp~~v~~aL~~~~~--~~---~i~FvdN~DP~~i~~~l~~L~~~l~-~TLvIViSKSGtT~ETl 261 (619)
.++++||+.|||-.-+-+..+.++++--.. ++ ++.+-.+-.+..+.++.+..-.++. --.-+.+|--..+.|+.
T Consensus 147 ~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r 226 (345)
T PRK14457 147 RRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLR 226 (345)
T ss_pred CCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHH
Confidence 357899999999999999888887754211 22 4443222245566665543200000 01235578888888887
Q ss_pred HHH
Q 007074 262 NGL 264 (619)
Q Consensus 262 ~~~ 264 (619)
..+
T Consensus 227 ~~i 229 (345)
T PRK14457 227 ETL 229 (345)
T ss_pred HHh
Confidence 654
No 221
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=20.28 E-value=2e+02 Score=24.05 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHcCCCchhhHHHHHHHHHhcCCCceEeecC
Q 007074 544 RVLAVLNEASCKEPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAEGS 598 (619)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (619)
.+.+.|++. ..|+|++||.+.+.. +---.+...|+ .|+| |...++
T Consensus 9 ~~VeymK~r-----~~Plt~~eI~d~l~~-d~~~~~~~~Lk---~npK-I~~d~~ 53 (65)
T PF02186_consen 9 KAVEYMKKR-----DHPLTLEEILDYLSL-DIGKKLKQWLK---NNPK-IEYDPD 53 (65)
T ss_dssp HHHHHHHHH------S-B-HHHHHHHHTS-SS-HHHHHHHH---H-TT-EEEE-T
T ss_pred HHHHHHHhc-----CCCcCHHHHHHHHcC-CCCHHHHHHHH---cCCC-EEEecC
Confidence 566666664 379999999999985 44444444444 5555 666654
No 222
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=20.13 E-value=4.7e+02 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=14.1
Q ss_pred ceEEEEecccCchHHHHHHHHh
Q 007074 191 TSILSVGIGGSALGPQFVAEAL 212 (619)
Q Consensus 191 ~~VVvIGIGGS~LGp~~v~~aL 212 (619)
++|+++|+|+- |-..++..+
T Consensus 4 ~~v~ivGag~~--G~a~~~~~~ 23 (96)
T PF02629_consen 4 TNVIIVGAGNL--GRALLYNGF 23 (96)
T ss_dssp EEEEEETTTSH--HHHHHHHHH
T ss_pred CeEEEECCCCc--HHHHHHhHH
Confidence 68999999984 555554444
Done!