RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007074
(619 letters)
>gnl|CDD|237609 PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 528
Score = 971 bits (2512), Expect = 0.0
Identities = 352/535 (65%), Positives = 415/535 (77%), Gaps = 8/535 (1%)
Query: 76 DPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANP 135
D +LW+RY DWLY H ELGL+LD+SR+ F D F+E +EP+FQ AF AM LE GAIANP
Sbjct: 2 DALQLWQRYCDWLYYHPELGLWLDISRMNFDDAFLESLEPKFQKAFAAMAALEAGAIANP 61
Query: 136 DEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILS 195
DEGRMVGHYWLR PELAP ++++I TL + FA +V SG IKPP+ +FT +L
Sbjct: 62 DEGRMVGHYWLRNPELAPTPEIRAEITETLAQIEAFAAKVHSGTIKPPNG--EKFTDVLW 119
Query: 196 VGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSG 255
+GIGGSALGPQFVAEAL P++ L I FIDNTDP GID +A+LG LA+TLVVVISKSG
Sbjct: 120 IGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSG 179
Query: 256 GTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRT 315
GTPETRNG+LE + A+ AGL+FA VAIT + S LD + EGWLARFPM+DWVGGRT
Sbjct: 180 GTPETRNGMLEAKAAYEAAGLDFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGRT 239
Query: 316 SEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKD 375
SE SAVGLLPAALQGID+R LAGA MDEA R L+NNPAALLAL WY+A DG G KD
Sbjct: 240 SETSAVGLLPAALQGIDIRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKD 299
Query: 376 MVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLRE 435
MVVLPYKD LLLFSRYLQQLVMESLGKE DLDGN V+QG+ VYGNKGSTDQHAY+QQLR+
Sbjct: 300 MVVLPYKDRLLLFSRYLQQLVMESLGKELDLDGNVVHQGIAVYGNKGSTDQHAYVQQLRD 359
Query: 436 GVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEV 495
GV NFF TFIEVL DR G E+EPGVT GDYL G LQGTR ALY N R+S+T+T+ EV
Sbjct: 360 GVDNFFVTFIEVLEDR-QGSSIEVEPGVTSGDYLSGFLQGTRQALYENGRQSITITIPEV 418
Query: 496 TPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCK 555
PR++GAL+AL+ERAVG+YASLVNINAYHQPGVEAGKKAA +L LQK+V +L K
Sbjct: 419 NPRTLGALIALFERAVGLYASLVNINAYHQPGVEAGKKAAAAILDLQKKVEELL-----K 473
Query: 556 EPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVYLG 610
E L+I+E+A PE +E IYKI+ H+AAN+R ++ EG +P S+++ G
Sbjct: 474 EDGGELSIEEIAAALGAPEQVETIYKILRHLAANNRGVVLEGDWSNPASLRISKG 528
>gnl|CDD|215351 PLN02649, PLN02649, glucose-6-phosphate isomerase.
Length = 560
Score = 732 bits (1892), Expect = 0.0
Identities = 234/590 (39%), Positives = 299/590 (50%), Gaps = 95/590 (16%)
Query: 69 AKNGLEKDPRELWKRYVDWLYQ-----HKEL---------------GLYLDVSRVGFTDE 108
K L WKR V +YQ +EL G+YLD SR TDE
Sbjct: 2 TKKTLLISDTPAWKRLVAHVYQIKKTHLRELLNDAERCQSMIAEFDGIYLDYSRQRVTDE 61
Query: 109 FVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKS------Q 160
+E + P +AA F+ +E + G I N E R V H LR P LAP L +
Sbjct: 62 TMELLFPLAEAANLFEKIEAMFSGEIINSTEDRAVLHVALRAPRLAP--ILVDGKNVVPE 119
Query: 161 IETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPL- 219
+ LD ++ F+++V SGK K + RFT+++S+GIGGS LGP FV EALA D L
Sbjct: 120 VWEVLDKIKAFSEDVRSGKWK--GATGKRFTNVVSIGIGGSFLGPLFVHEALATDPEALK 177
Query: 220 -----KIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREA 274
K+RF+ N DP I QIAQL PE +TLVVV+SK+ T ET V+K R+A
Sbjct: 178 SAKGRKLRFLANVDPVDIARQIAQLDPE--TTLVVVVSKTFTTAETMLNARTVRKWLRDA 235
Query: 275 --GLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ-GI 331
GL AK VA++ N LL N I+ W A FP +DWVGGR S SAVGLLP +LQ G
Sbjct: 236 LGGLAVAKHMVAVS-TNLLLVNKFGIDPWNA-FPFWDWVGGRYSVCSAVGLLPLSLQYGF 293
Query: 332 D-VREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSR 390
D V E L GA+ MDE RT L+ N LL L W S +G +LPY +LL F+
Sbjct: 294 DVVEEFLEGAASMDEHFRTAPLKENIPVLLGLLSVWNSSFLGYPARAILPYSQALLKFAP 353
Query: 391 YLQQLVMESLGKEFDLDGNR--VNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVL 448
++QQL MES GK DLDGN VN G +G G+ QH++ Q + +G N FI V+
Sbjct: 354 HIQQLDMESNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLIHQG-RNIPCDFIGVV 412
Query: 449 RDRPPGHDWELEPGVTCGDYLFGMLQGTRSAL-----------------------YANDR 485
R + P H W GV+ D L AL +A +R
Sbjct: 413 RSQQPVHLWL-GEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPEELIPHKVFAGNR 471
Query: 486 ESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRV 545
S+++ + E+T +VG L+ALYE V + + NIN++ Q GVE GK AL KRV
Sbjct: 472 PSLSILLPELTAYTVGQLLALYEHRVAVQGFIWNINSFDQWGVELGK-------ALAKRV 524
Query: 546 LAVLNEASCK-EPVEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALI 594
AVLNEA K EPVE A ++ H AN RALI
Sbjct: 525 RAVLNEARTKGEPVEGFNSSTTA--------------LLNHYLANKRALI 560
>gnl|CDD|223244 COG0166, Pgi, Glucose-6-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 446
Score = 363 bits (935), Expect = e-120
Identities = 168/475 (35%), Positives = 225/475 (47%), Gaps = 50/475 (10%)
Query: 95 GLYLDVSRVGFTDEFVEEMEP--RFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELA 152
GL LD S+ DE +E + + ++ + KGA N EGR V H LR PE
Sbjct: 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALRMPE-- 59
Query: 153 PNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEAL 212
++ L ++ FAD+V G+ T I+++GIGGS LGP+ V EAL
Sbjct: 60 --------VDEVLKRMKAFADDV----------RSGKITDIVNIGIGGSDLGPRAVTEAL 101
Query: 213 APDNPP-LKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271
P P ++ F+ N DP + + +L PE +TL +VISKSG T ET +K
Sbjct: 102 RPYAPNGPRVHFVSNVDPTYLAEVLKKLDPE--TTLFIVISKSGTTLETLTNFRLARKWL 159
Query: 272 REAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGI 331
+ K VA + L G F + DWVGGR S +SAVGLLP AL GI
Sbjct: 160 EKKEEAAKKHFVATSTNGGALAVLAGENGL-ETFEIPDWVGGRYSVLSAVGLLPLALGGI 218
Query: 332 DVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRY 391
D +E+L GA+ DE RTT L N A L AL W + G++ V+LPY L F +
Sbjct: 219 DFKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAW 278
Query: 392 LQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVL- 448
LQQL MES GK G VN +G G+ QHA+ Q L +G A FIE+
Sbjct: 279 LQQLNMESNGKSVKGIGPEVNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKPADFIEIEE 338
Query: 449 -RDRPPGHDWELEPGVTCGDYLFG---------MLQGTRSALYANDRESVTVTVQEVTPR 498
+ GH D L T A A +R S + ++E+TP
Sbjct: 339 SIEDLDGHH----------DKLLSNFLAQTEALAFGKTLLAHTAGNRPSNLILLRELTPY 388
Query: 499 SVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEAS 553
++GAL+ALYE + L IN++ QPGVE GKK A +L L+ S
Sbjct: 389 TLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLGKLGGELSAELHDS 443
>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
Length = 548
Score = 243 bits (624), Expect = 6e-73
Identities = 171/507 (33%), Positives = 231/507 (45%), Gaps = 73/507 (14%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
GL LD S+ TDE + + E + A AM G N E R V H LR P
Sbjct: 46 GLLLDYSKNRITDETLALLLDLAREAGLEGARDAMFA---GEKINTTEDRAVLHTALRNP 102
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
P + ++ L ++ FA+ V SG+ K + T ++++GIGGS LGP
Sbjct: 103 SNTPILVDGQDVMPEVHAVLARMKAFAEAVRSGEWKGYT--GKAITDVVNIGIGGSDLGP 160
Query: 206 QFVAEALAPD-NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPET---- 260
V EAL P +P L++ F+ N D A + + +L PE +TL +V SK+ T ET
Sbjct: 161 VMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPE--TTLFIVASKTFTTQETLTNA 218
Query: 261 ---RNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGG 313
R+ L EA + AK VA++ N + + F +DWVGG
Sbjct: 219 HSARDWFLA--AGGDEAAV--AKHFVAVST------NAEAVAEFGIDPDNMFGFWDWVGG 268
Query: 314 RTSEMSAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGV 371
R S SA+GL AL G D E+LAGA MDE RT L N LLAL W +
Sbjct: 269 RYSLWSAIGL-SIALAIGPDNFEELLAGAHAMDEHFRTAPLEKNLPVLLALIGVWYRNFF 327
Query: 372 GSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAY 429
G++ VLPY L F YLQQL MES GK D DG V+ G ++G G+ QHA+
Sbjct: 328 GAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQTGPIIWGEPGTNGQHAF 387
Query: 430 IQQLREGVHNFFATFIEVLR-DRPPG--HDWEL---------------EPGVTCGDYLFG 471
Q L +G A FI + P G HD L V G
Sbjct: 388 FQLLHQGTKLVPADFIAPAQPHNPLGDHHDLLLANCFAQTEALMFGKTAEEVRAELRAKG 447
Query: 472 MLQGTRSAL-----YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQP 526
+ + L + +R S T+ + +TP ++GAL+ALYE V + + IN++ Q
Sbjct: 448 LDEAEAEELAPHKVFPGNRPSTTILLDRLTPFTLGALIALYEHKVFVQGVIWGINSFDQW 507
Query: 527 GVEAGKKAAGEVLALQKRVLAVLNEAS 553
GVE GK LA KR+L L S
Sbjct: 508 GVELGK-----QLA--KRILPELEGDS 527
>gnl|CDD|179193 PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional.
Length = 446
Score = 222 bits (569), Expect = 3e-66
Identities = 135/460 (29%), Positives = 203/460 (44%), Gaps = 74/460 (16%)
Query: 104 GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIET 163
G + E +E ++ + +A + + E G + FL+ +
Sbjct: 18 GISIEDIESVKEKITSAVENLME-------KEPNGEL--------------GFLELPYDR 56
Query: 164 TLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN------- 216
+LD+ + + + F +++ +GIGGSALG + AL P N
Sbjct: 57 SLDSYEELKEWSKN------------FDNVVVLGIGGSALGNLALHYALNPLNWNELSKE 104
Query: 217 --PPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREA 274
++ +DN DP + + E TL VISKSG T ET L ++ +
Sbjct: 105 ERNGPRVFVLDNVDPEKTASILDVIDLE--KTLFNVISKSGNTAETLANYLIIRGILEKL 162
Query: 275 GLEFAKQGVAIT-QENSLLDNTVRIEGWLARFPMFDW---VGGRTSEMSAVGLLPAALQG 330
GL+ K V T E L EG + + VGGR S ++ VGL PAA G
Sbjct: 163 GLDPKKHLVFTTDPEKGKLKKIAEKEG----YRTLEIPENVGGRFSVLTPVGLAPAAALG 218
Query: 331 IDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWA-SDGVGSKDM-VVLPYKDSLLLF 388
ID+ E+L GA MD+ + NPA L AL Y + G K++ V++PY + L F
Sbjct: 219 IDIEELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYNRG---KNISVMMPYSERLKYF 275
Query: 389 SRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVL 448
+ +QL ESLGK+ G T G+TDQH+ +Q EG + TF++V
Sbjct: 276 GDWYRQLWAESLGKK--------GVGQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVE 327
Query: 449 RDR-----PPGHDWELEP----GVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTPRS 499
+ R P ++ E G + + +GT AL N R +V +T+ E+ +
Sbjct: 328 KYRRDVEIPYEYEDIEELSYLGGHKLSELINSEQKGTEIALTENGRPNVKITLDELNEYT 387
Query: 500 VGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVL 539
VG L +YE L+NINA+ QPGVE GKK +L
Sbjct: 388 VGQLFYMYEMQTAFMGELLNINAFDQPGVELGKKITYALL 427
>gnl|CDD|185612 PTZ00430, PTZ00430, glucose-6-phosphate isomerase; Provisional.
Length = 552
Score = 225 bits (576), Expect = 4e-66
Identities = 155/503 (30%), Positives = 228/503 (45%), Gaps = 85/503 (16%)
Query: 95 GLYLDVSRVGFTDEFVEEMEPRFQAA-----FKAMEELEKGAIANPDEGRMVGHYWLRKP 149
G+ LD+SR +E ++ + + A + ++++ G N E R V H LR P
Sbjct: 43 GVTLDLSRQRLDEETLKLL---IELAEEAKLKEKIKDMFNGEKINTTENRAVLHTALRAP 99
Query: 150 ELAPNSFLKSQ------IETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSAL 203
+ + LD ++KF+D++ SG+I S + +++ +GIGGS L
Sbjct: 100 RGEK--VVVDGKNVLEDVHEVLDRIKKFSDKIRSGEIL--GSTGKKLKNVICIGIGGSYL 155
Query: 204 GPQFVAEALAPDNPPL------KIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGT 257
G +FV EAL K+RF+ N DP + L PE TLVV+ISK+ T
Sbjct: 156 GTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPE--ETLVVIISKTFTT 213
Query: 258 PET-------RNGLLEVQKAFREAGLEFAKQGVAI------TQENSLLDNTVRIEGWLAR 304
ET R LL+ K+ +K A+ T E + D V
Sbjct: 214 AETMLNAKTVRQWLLDNIKSKEA----LSKHLCAVSTNLKLTSEFGIPDENV-------- 261
Query: 305 FPMFDWVGGRTSEMSAVGLLPAALQ-GID-VREMLAGASLMDEANRTTVLRNNPAALLAL 362
F +DWVGGR S SAVG+LP ++Q G D V++ L G MDE RT L N LL L
Sbjct: 262 FGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDMDEHFRTAPLEENLPVLLGL 321
Query: 363 CWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGN 420
++ S +G + +LPY +LL F ++QQL+MES GK LDGN ++ G +G
Sbjct: 322 TSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLDYNTGEIYFGE 381
Query: 421 KGSTDQHAYIQQLREG--VHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRS 478
G+ QH++ Q L +G V + F F + L V+ D L
Sbjct: 382 PGTNGQHSFYQLLHQGRVVPSEFIGFAKSQNP-----IKLLGEPVSNHDELMSNFFAQPD 436
Query: 479 AL-----------------------YANDRESVTVTVQEVTPRSVGALVALYERAVGIYA 515
AL + +R S+ + E+ P ++G L+ALYE +
Sbjct: 437 ALAFGKTYEELEKEGVPEELIPHKVFPGNRPSLLLLFPELNPYTIGQLLALYEHRTVVEG 496
Query: 516 SLVNINAYHQPGVEAGKKAAGEV 538
L NIN++ Q GVE GK A +V
Sbjct: 497 FLWNINSFDQWGVELGKVLAKDV 519
>gnl|CDD|237608 PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 533
Score = 223 bits (571), Expect = 1e-65
Identities = 151/458 (32%), Positives = 226/458 (49%), Gaps = 58/458 (12%)
Query: 124 MEELEKGAIAN-----PDEGRMVGHY----WLRKPEL---APNSFLKSQIETTLDAVRKF 171
M+ ++ GA+ N P E R V H + L A + S+ E L+ + +F
Sbjct: 77 MKAMQNGAVINRIEGFPSENRPVLHTATRGQVGDSVLTDEAEDMAEFSKRE--LERLAEF 134
Query: 172 ADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALA----PDNPPLKIRFIDNT 227
+V SG+IK +S +FT+++ +GIGGS LGP+ + AL D ++ FI N
Sbjct: 135 LKKVRSGEIK--NSNGKKFTTVVQIGIGGSDLGPKALYLALKNYAKKDK---RVHFISNV 189
Query: 228 DP---AGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVA 284
DP A + +I +LA TL +V+SKSG T ET V+ A ++AGL++ K +A
Sbjct: 190 DPDDAAEVLSEI-----DLAKTLFIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIA 244
Query: 285 ITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ-GIDV-REMLAGASL 342
+T E S +D+ G+L F M+D +GGR S S VG + G +V +E L GA+
Sbjct: 245 VTSEGSPMDDE---SGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFLKGAAA 301
Query: 343 MDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGK 402
MD+A +R N L AL W + +G V+PY +L F +LQQL MES GK
Sbjct: 302 MDKAALNPNIRENLPLLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDMESNGK 361
Query: 403 EFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREG---VHNFFATFIEVLRDRPPGHDW 457
+ G +N G ++G G+ QH++ Q L +G V F F E G D
Sbjct: 362 SVNRFGEPINFKTGPIIWGEPGTNGQHSFFQLLHQGTDIVPVEFIGFKESQL----GQDI 417
Query: 458 ELEPGVTCGDYLFGMLQGTRSAL------------YANDRESVTVTVQEVTPRSVGALVA 505
++ G T LF L AL + +R S + +++TP ++GAL+A
Sbjct: 418 VIQ-GSTSQQKLFANLIAQIIALACGKENTNPNKNFKGNRPSSLLVAKQLTPYTLGALLA 476
Query: 506 LYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQK 543
YE V NIN++ Q GV+ GK A ++L + K
Sbjct: 477 HYENKVMFQGFCWNINSFDQEGVQLGKVLANQILGIMK 514
>gnl|CDD|215867 pfam00342, PGI, Phosphoglucose isomerase. Phosphoglucose isomerase
catalyzes the interconversion of glucose-6-phosphate and
fructose-6-phosphate.
Length = 483
Score = 220 bits (561), Expect = 1e-64
Identities = 141/474 (29%), Positives = 213/474 (44%), Gaps = 44/474 (9%)
Query: 99 DVSRVGFTDEFVEEMEPRFQAA-FKAMEELE-KGAIANPDEGRMVGHYWLR----KPELA 152
D S+ DE + + + A A E G N E R V H LR +P
Sbjct: 1 DYSKNHINDETLSALLKLAEEAGLDAKREAMFLGEKINTTENRAVLHVALRNRSNRPIYV 60
Query: 153 PNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEAL 212
+ +++ LD ++ F + + SG K + T ++++GIGGS LGP+ V EAL
Sbjct: 61 DGKDVMPEVDNVLDKMKDFFERIRSGAWKGYTGKA--ITDVVNIGIGGSDLGPRMVIEAL 118
Query: 213 APD-NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271
L + F+ N D I + +L PE +TL+ V SK+ T ET ++
Sbjct: 119 KHYSENALIVFFVSNVDGTHIAEVLKKLNPE--TTLINVASKTFTTAETMTNARSAREWL 176
Query: 272 REAGL---EFAKQGVAITQENSLLDNTVRIEGWLA----RFPMFDWVGGRTSEMSAVGLL 324
+ AK VA++ N ++E + F +DWVGGR S SA+GL
Sbjct: 177 LKKLGEKSAVAKHFVALS------TNAKKVEKFGIDPENMFAFWDWVGGRYSVWSAIGL- 229
Query: 325 PAALQG--IDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYK 382
P AL + E+L GA+ MD+ +T L N LLAL W + G++ +LPY
Sbjct: 230 PIALSIGFENFEELLEGAASMDKHFSSTPLEKNAPYLLALVGVWYYNFFGAQTHAILPYD 289
Query: 383 DSLLLFSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQLREGVH-N 439
L F+ YLQQL MES GK D DG V+ G +G G+ QH++ Q + +G
Sbjct: 290 QYLHRFAAYLQQLFMESNGKGVDQDGVLVDHFTGSIDFGEPGTNGQHSFYQLIHQGTRLI 349
Query: 440 FFATFIEVLRDRPPG--HDWELEPGVTCGDYL-FG---------MLQGTRSA--LYANDR 485
+ V H + + L +G GT + +R
Sbjct: 350 PCDFILAVKSQNENLVHHKELMSNFFAQTEALAYGKTPEEVNKEAFAGTLLPHKTFTGNR 409
Query: 486 ESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVL 539
S+++ + E+TP ++GAL+A YE + +L IN++ Q GVE GK A +L
Sbjct: 410 PSLSILLPELTPYTLGALIAFYEHKCFVQGALWGINSFDQWGVELGKVLAKAIL 463
>gnl|CDD|240147 cd05016, SIS_PGI_2, Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based
on the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of glucose
6-phosphate to fructose 6-phosphate. As an extracellular
protein, PGI also has functions equivalent to
neuroleukin (NLK), autocrine motility factor (AMF), and
maturation factor (MF). Evidence suggests that PGI, NLK,
AMF, and MF are closely related or identical. NLK is a
neurotrophic growth factor that promotes regeneration
and survival of neurons. The dimeric form of NLK has
isomerase function, whereas its monomeric form carries
out neurotrophic activity. AMF is a cytokine that
stimulates cell migration and metastasis. MF mediates
the differentiation of human myeloid leukemic HL-60
cells to terminal monocytic cells.
Length = 164
Score = 191 bits (487), Expect = 8e-58
Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 374 KDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQL 433
K +LPY L F +LQQL MES GK DG G +G G+ DQH++ Q +
Sbjct: 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGEDYPTGPIPWGAPGTNDQHSFFQLI 60
Query: 434 REGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSAL-YANDRESVTVTV 492
+G + FI V +P + G T D L TR AL + R S T+ +
Sbjct: 61 HQGTKDKPVDFIAVK--KPQNDVLDYLAGKTLHDLLLANCLATREALMFPGGRPSNTIVL 118
Query: 493 QEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEV 538
E+TP ++GAL+ALYE + +L+ IN + QPGVE GKK A ++
Sbjct: 119 PELTPYTLGALLALYEHKTAVQGALLGINPFDQPGVELGKKLAKKI 164
>gnl|CDD|240146 cd05015, SIS_PGI_1, Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based
on the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of glucose
6-phosphate to fructose 6-phosphate. As an extracellular
protein, PGI also has functions equivalent to
neuroleukin (NLK), autocrine motility factor (AMF), and
maturation factor (MF). Evidence suggests that PGI, NLK,
AMF, and MF are closely related or identical. NLK is a
neurotrophic growth factor that promotes regeneration
and survival of neurons. The dimeric form of NLK has
isomerase function, whereas its monomeric form carries
out neurotrophic activity. AMF is a cytokine that
stimulates cell migration and metastasis. MF mediates
the differentiation of human myeloid leukemic HL-60
cells to terminal monocytic cells.
Length = 158
Score = 176 bits (450), Expect = 1e-52
Identities = 69/167 (41%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 164 TLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAP-DNPPLKIR 222
L+ +++FA++V SGK + T ++ +GIGGS LGP+ V EAL P L++
Sbjct: 3 ELERIKEFAEKVRSGK---------KITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLH 53
Query: 223 FIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLE-FAKQ 281
F+ N DP + + +L PE +TL +VISKSG T ET ++ EAG + AK
Sbjct: 54 FVSNVDPDDLAELLKKLDPE--TTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKH 111
Query: 282 GVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAAL 328
VAIT S L IE L F + DWVGGR S +S+VG LP AL
Sbjct: 112 FVAITDNGSGLLKKAGIE-GLNTFEIPDWVGGRFSVLSSVGGLPLAL 157
>gnl|CDD|235168 PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.
Length = 410
Score = 167 bits (426), Expect = 4e-46
Identities = 112/360 (31%), Positives = 182/360 (50%), Gaps = 30/360 (8%)
Query: 189 RFTSILSVGIGGSALGPQFVAEALAPD-NPPLKIRFIDNTDPAGIDHQIAQLGPELASTL 247
+I+ +GIGGS+LG + + L + N ++ F++NTDP I+ ++++ E +TL
Sbjct: 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLE--NTL 114
Query: 248 VVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPM 307
+VISKSG T ET + + F + E K + IT +S L+ + + F +
Sbjct: 115 FIVISKSGTTIETISIFKYLLSHF-KLDQELKKNFLFITDPDSKLEQFAKENN-IKCFNI 172
Query: 308 FDWVGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWA 367
VGGR S +SAVG++P AL G D++ +L GA + + +L +++A
Sbjct: 173 PKNVGGRFSVLSAVGIVPLALCGYDIKALLEGAKACKD----SFFEQKEDHILKKAYFYA 228
Query: 368 SDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQH 427
+ V+ Y D+L F+ + QL ESLGK G + GLT G GS DQH
Sbjct: 229 THKNAYNINVLFSYSDALKGFNDWYVQLWGESLGK---KQGYKTRVGLTPIGLIGSRDQH 285
Query: 428 AYIQQLREGVHNFFATFIEV--LRDRPPGHDWELEPGVTCGDYLFGM-------LQ--GT 476
+++Q + EG + TFI++ ++ P + L+ + D++ G+ Q T
Sbjct: 286 SFLQLIMEGPRDKTVTFIKIKDFQNAPKIPNISLKGLESL-DFVNGVSFNELINAQCDAT 344
Query: 477 RSALYANDRESVTVTVQEVTPRSVGALVALYE---RAVGIYASLVNINAYHQPGVEAGKK 533
AL A D +T++++ S+G L+ YE AVG ++ IN Y QPGVE GK+
Sbjct: 345 MEALIAEDIPVDVITLEKLDEFSIGYLIYYYELLTSAVGK---MLGINTYDQPGVEVGKR 401
>gnl|CDD|184504 PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 448
Score = 125 bits (316), Expect = 8e-31
Identities = 131/478 (27%), Positives = 193/478 (40%), Gaps = 99/478 (20%)
Query: 98 LDVSRVG--FTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNS 155
D S+ + +E ++P+ +AA + + GA +G WL +L P +
Sbjct: 6 FDYSKALSFVGEHELEYLQPQVKAAHQTLHN-GTGA-----GNDFLG--WL---DL-PEN 53
Query: 156 FLKSQIETTLDAVRKFAD--EVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALA 213
+ K + A K +V+ + +GIGGS LG + E L
Sbjct: 54 YDKEEFARIKKAAEKIKSDSDVL-----------------VVIGIGGSYLGARAAIEFL- 95
Query: 214 PDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTL--------------VVVISKSGGTPE 259
N A QI G ++ST + VISKSG T E
Sbjct: 96 --NHSFYNLLPKEQRKA---PQIIFAGNSISSTYLADLLEYLKDKDFSINVISKSGTTTE 150
Query: 260 T-------RNGLLEVQKAFREAGLEFAKQG-VAITQENS-LLDNTVRIEGWLARFPMFDW 310
+ LLE + G E AK+ A T + L EG+ F + D
Sbjct: 151 PAIAFRIFKE-LLEKK-----YGKEEAKKRIYATTDKAKGALKTLADAEGY-ETFVIPDD 203
Query: 311 VGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDG 370
VGGR S ++AVGLLP A+ GID+ ++ GA+ + ++ L NPA A
Sbjct: 204 VGGRFSVLTAVGLLPIAVAGIDIDALMKGAADARKDYSSSDLSENPAYQYAAVRNILYRK 263
Query: 371 VGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHA-- 428
G +++ Y+ SL FS + +QL ES GK+ +G+ STD H+
Sbjct: 264 -GYTTEILVNYEPSLQYFSEWWKQLFGESEGKD--------QKGIFPASANFSTDLHSLG 314
Query: 429 -YIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGD---YLFG---------MLQG 475
YIQ EG N F T I+V + P D + D YL G +G
Sbjct: 315 QYIQ---EGRRNLFETVIKVEK---PRKDLTIPEDEEDLDGLNYLAGKTVDFVNKKAFEG 368
Query: 476 TRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKK 533
T A ++ V + E+ + G LV +E+A I L+ +N + QPGVEA KK
Sbjct: 369 TLLAHTDGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFDQPGVEAYKK 426
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 102 bits (257), Expect = 1e-22
Identities = 111/415 (26%), Positives = 169/415 (40%), Gaps = 72/415 (17%)
Query: 133 ANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTS 192
DE + +G WL E L FA+EV + FT
Sbjct: 419 TGADEAKWLG--WLDIVEDELAH---------LAEYEAFAEEVRAEG----------FTD 457
Query: 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVIS 252
+ +G+GGS+LGP+ +AE + K+ +D+TDPA + A + +LA TL +V S
Sbjct: 458 AVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAV--DLARTLFIVSS 515
Query: 253 KSGGTPETRNGLLE--VQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPMFDW 310
KSGGT E N + + G + + VA+T S L+ + +G+ F
Sbjct: 516 KSGGTLEP-NIFKDYFFARVKEVLGAKAGRHFVAVTDPGSSLEKVAKEDGFRKIFHGDPD 574
Query: 311 VGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTV-LRNNPAALLALCWYWASD 369
+GGR S +S GL+PAA GIDVR +L A M + +V +NP L L A
Sbjct: 575 IGGRYSVLSPFGLVPAAAAGIDVRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVA-- 632
Query: 370 GVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKE----FDLDGNRVNQGLTVYGNKGSTD 425
+D V + ++ F + +QL+ ES GKE +DG + VYGN D
Sbjct: 633 ATQGRDKVTIVASPAIADFGAWAEQLIAESTGKEGKGLIPIDGEPLG-DPAVYGN----D 687
Query: 426 QHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDR 485
+ F + + + D L +AL A
Sbjct: 688 R-------------VFVY-LRLAGEADAAQDAAL------------------AALEAAGH 715
Query: 486 ESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
V + + +G +E A + +++ IN + QP VEA K E+ A
Sbjct: 716 PVVRIVLDS--AEQLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIKTRELTA 768
>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 39.6 bits (93), Expect = 0.004
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 25/135 (18%)
Query: 161 IETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLK 220
+ L+A R E+ + IL VG G S A L+
Sbjct: 16 VARLLEANRAVLAELAD------FLRKRGIDRILFVGCGSSL----HAATPAKY---LLE 62
Query: 221 IRFIDNTDPAGIDHQIAQLGP--ELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEF 278
+ G +LV+ S+SG TPE+ + + +E G
Sbjct: 63 RELGLLVAAIPASEFLTN-GAKYLGEDSLVIAFSQSGNTPES----VAAAELAKEGGAL- 116
Query: 279 AKQGVAIT-QENSLL 292
+A+T +E+S L
Sbjct: 117 ---TIALTNEEDSPL 128
>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain
the SIS (Sugar ISomerase) domain and have both the
phosphoglucose isomerase (PGI) and the phosphomannose
isomerase (PMI) functions. These functions catalyze the
reversible reactions of glucose 6-phosphate to fructose
6-phosphate, and mannose 6-phosphate to fructose
6-phosphate, respectively at an equal rate. This protein
contains two SIS domains. This alignment is based on the
first SIS domain.
Length = 119
Score = 36.9 bits (86), Expect = 0.005
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 197 GIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGG 256
G+GGS +G + L + D T PA +D TLV+ +S SG
Sbjct: 6 GMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFVD----------RKTLVIAVSYSGN 55
Query: 257 TPETRNGLLEVQKA 270
T ET + + + ++
Sbjct: 56 TEETLSAVEQAKER 69
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate.
Length = 139
Score = 36.1 bits (84), Expect = 0.013
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVIS 252
I G+G S L VAE LA L + +DP A L P +V+ IS
Sbjct: 16 IYIFGVGSSGL----VAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPG---DVVIAIS 68
Query: 253 KSGGTPETRNGLLEVQKAFREAGLEFAKQGVAIT-QENSLL 292
SG T ET +E + +E G + +AIT NS L
Sbjct: 69 FSGETKET----VEAAEIAKERGAKV----IAITDSANSPL 101
>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
isomerase; Validated.
Length = 337
Score = 36.9 bits (86), Expect = 0.027
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 30/131 (22%)
Query: 157 LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN 216
Q E L+ E KI +I+ G+GGS +G + L D
Sbjct: 11 WPEQFEEALEIAISLDLEEDLEKID----------NIVISGMGGSGIGGD-LLRILLFDE 59
Query: 217 PPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAG 275
+ + D T PA +D TLV+ +S SG T ET + A +A
Sbjct: 60 LKVPVFVNRDYTLPAFVDE----------KTLVIAVSYSGNTEETLS-------AVEQA- 101
Query: 276 LEFAKQGVAIT 286
L+ + +AIT
Sbjct: 102 LKRGAKIIAIT 112
>gnl|CDD|107279 cd06284, PBP1_LacI_like_6, Ligand-binding domain of an
uncharacterized transcription regulator from
Actinobacillus succinogenes and its close homologs from
other bacteria. This group includes the ligand-binding
domain of an uncharacterized transcription regulator
from Actinobacillus succinogenes and its close homologs
from other bacteria. This group belongs to the the
LacI-GalR family repressors and are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding.
Length = 267
Score = 33.7 bits (78), Expect = 0.20
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 471 GMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEA 530
++ G R A DR G AL E + L+ + +E+
Sbjct: 119 ALITGPRDNPLARDRLE-------------GYRQALAEAGLPADEELIQEGDF---SLES 162
Query: 531 GKKAAGEVLALQKRVLAV 548
G AA +LAL R A+
Sbjct: 163 GYAAARRLLALPDRPTAI 180
>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 126
Score = 31.7 bits (73), Expect = 0.33
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 246 TLVVVISKSGGTPETRNGLLEVQKAFREAG 275
TLV+ IS+SG T +T L + +E G
Sbjct: 48 TLVIAISQSGETADT----LAALRLAKEKG 73
>gnl|CDD|193533 cd05657, M42_glucanase_like, M42 Peptidase, Endoglucanase-like
subfamily. Peptidase M42 family, glucanase (endo-1
4-beta-glucanase or endoglucanase)-like subfamily.
Proteins in this subfamily are co-catalytic
metallopeptidases, found in archaea and bacteria. They
show similarity to cellulase and endo-1,4-beta-glucanase
(endoglucanase) which typically bind two zinc or cobalt
atoms. Some of the enzymes exhibit typical
aminopeptidase specificity, whereas others are also
capable of N-terminal deblocking activity, i.e.
hydrolyzing acylated N-terminal residues. Many of these
enzymes are assembled either as tetrahedral dodecamers
or as octahedral tetracosameric structures, with the
active site located on the inside such that substrate
sizes are limited, indicating function as possible
peptide scavengers.
Length = 336
Score = 32.9 bits (76), Expect = 0.44
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 111 EEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHY--WLRKPELAPNSFLKSQ-------I 161
+ ME R K+ E++E I VG + + + E+ + F+KS+ +
Sbjct: 133 DNMEVRIDEKVKSKEDVEALGI-------NVGDFVAFDPRTEITESGFIKSRHLDDKASV 185
Query: 162 ETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN 216
L ++ +E IKP + F+ VG G SA P+ V E LA D
Sbjct: 186 AILLALLKALKEE----NIKPKRTTHFLFSIYEEVGHGASAGPPEDVTELLAVDM 236
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 31.9 bits (73), Expect = 0.95
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 227 TDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAIT 286
+D G Q+A L P +V+ IS SG T E +E + +E G AK +AIT
Sbjct: 163 SDTHGQLMQLALLTPG---DVVIAISFSGYTREI----VEAAELAKERG---AKV-IAIT 211
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 31.9 bits (73), Expect = 1.0
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 102 RVGFTDEFVEEMEPRFQAAFKAMEELE-KGAIANPDEGRMVGHYWLRKPELAPN------ 154
V + + EE+ RF A K A+A+ ++ Y+ K E P
Sbjct: 242 NVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDL 301
Query: 155 ----SFLKSQIETTLDAVRKFADEVVSGKIKP 182
+ Q E + + + F + + GK+KP
Sbjct: 302 EGNKKYPMDQEEFSSENLEAFVKDFLDGKLKP 333
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 31.8 bits (71), Expect = 1.3
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 9 SSSPSIKSQTSIAKPLVILRKDSVTFPTRFSKTPSLVQTQSVAREISADLSNTNDVVPKK 68
+SS S K +T KP + S T PT+ T TQ+VA+ +A T DVV
Sbjct: 514 ASSESGKDKTPATKPAKGEVESSSTTPTKVVST-----TQNVAKPTTASSETTKDVVQTS 568
Query: 69 AKNGLEKDPRELWK 82
A + KD L K
Sbjct: 569 AGSSEAKDSAPLQK 582
>gnl|CDD|222568 pfam14136, DUF4303, Domain of unknown function (DUF4303). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 169 and 192 amino
acids in length.
Length = 155
Score = 30.4 bits (69), Expect = 1.6
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 60 NTNDVVPKKAKNGLEKDPRELWKRYVDWLYQHKELG--------LYLDVSRVGF-TDEFV 110
NT + + ++A + + D W +W Y+ L R D+F
Sbjct: 40 NTEEALEREASDYPDDDSYYKW-SPAEWPYEDFGDELFDEINKLLAERSERYDNEDDDFE 98
Query: 111 EEMEPRFQAAFKAMEELEK 129
E E +A A+ EL++
Sbjct: 99 EFREKLLEAMVAALRELDE 117
>gnl|CDD|240112 cd04795, SIS, SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis
of phosphosugars.
Length = 87
Score = 28.9 bits (65), Expect = 1.8
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 193 ILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGID-HQIAQLGPELASTLVVVI 251
I +GIGGS + A L I + ++ L +V+ +
Sbjct: 1 IFVIGIGGSGAIAAYFALELLELT---GIEVVALIATELEHASLLSLLRKGD---VVIAL 54
Query: 252 SKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAIT 286
S SG T E+ A A E +AIT
Sbjct: 55 SYSGRTE-------ELLAALEIA-KELGIPVIAIT 81
>gnl|CDD|213994 cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol
Phosphatase domain of Histidinol phosphate phosphatase
of Hisj like. Bacillus subtilis YtvP HisJ has strong
histidinol phosphate phosphatase (HisPPase) activity.
The PHP (also called histidinol phosphatase-2/HIS2)
domain is associated with several types of DNA
polymerases, such as PolIIIA and family X DNA
polymerases, stand alone histidinol phosphate
phosphatases (HisPPases), and a number of
uncharacterized protein families. HisPPase catalyzes the
eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
produce histidinol. The PHP domain has four conserved
sequence motifs and contains an invariant histidine that
is involved in metal ion coordination. The PHP domain of
HisPPase is structurally homologous to other members of
the PHP family that have a distorted (beta/alpha)7
barrel fold with a trinuclear metal site on the
C-terminal side of the barrel.
Length = 244
Score = 30.6 bits (70), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 74 EKDPRELWKRYVDWLYQHKELGLY-----LDVSRV-GFTDEFVEEMEPRFQAAFKAMEE 126
E D EL++RY D + + E GL+ D+ + G DE E+ E + +A+ E
Sbjct: 129 EGDIDELYERYFDLVEKAIESGLFDIIGHPDLIKKFGKNDEPDEDYEELIERILRAIAE 187
>gnl|CDD|240224 cd05798, SIS_TAL_PGI, SIS_TAL_PGI: Transaldolase (TAL)/
Phosphoglucose isomerase (PGI). This group represents
the SIS (Sugar ISomerase) PGI domain, of a
multifunctional protein (TAL-PGI ) having both TAL and
PGI activities. TAL_PGI contains an N-terminal TAL
domain and a C-terminal PGI domain. TAL catalyzes the
reversible conversion of sedoheptulose-7-phosphate (S7P)
and glyceraldehyde-3-phosphate (G3P), to
fructose-6-phosphate (F6P) and erythrose-4-phosphate
(E4P). PGI catalyzes the reversible isomerization of F6P
to glucose-6-phosphate (G6P). It has been suggested for
Gluconobacter oxydans TAL_PGI that this enzyme generates
E4P and G6P directly from S7P and G3P. G. oxydans
TAL_PGI contributes to increased xylitol production from
D-arabitol. As xylitol is an alternative natural
sweetner to sucrose, the microbial conversion of
D-arabitol to xylitol is of interest to food and
pharmaceutical industries.
Length = 129
Score = 29.3 bits (66), Expect = 2.7
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 461 PGVTCGDYLFGML-------QGTRSALYANDRESVTVTVQEVTPR-SVGALVALYERAVG 512
P V D +F L AL A + V ++ +G +E A
Sbjct: 44 PAVYGDDRVFVYLRLAGEADADQEEALLALEAAGHPVIRIDLDDAYDLGQEFFRWEMATA 103
Query: 513 IYASLVNINAYHQPGVEAGKKAAGE 537
+ +++ IN + QP VEA K
Sbjct: 104 VAGAVLGINPFDQPDVEASKIETRR 128
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 30.7 bits (70), Expect = 2.9
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 218 PLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLE 277
LK RF++ DP ID + ++ + + + T GL E A +E
Sbjct: 399 GLKERFLERQDPEPIDALFEEAKEQITAAHKPLREELAAVDPTLQGLAEKNLAKITKQVE 458
Query: 278 FAKQGV--AITQENSLLDNTV-RIEGWLARFPM 307
F ++ + AI +++ + RI+ L P
Sbjct: 459 FLEKRLLRAIRRKHDVELQQFDRIQTNL--RPN 489
>gnl|CDD|233741 TIGR02128, G6PI_arch, bifunctional phosphoglucose/phosphomannose
isomerase. This bifunctional isomerase is a member of
the larger PGI superfamily and only distantly related to
other glucose-6-phosphate isomerases. The family is
limited to the archaea.
Length = 308
Score = 30.1 bits (68), Expect = 3.6
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 197 GIGGSALGPQFVAEALAPDNPPLKIRFIDNTD-PAGIDHQIAQLGPELASTLVVVISKSG 255
G+GGS + + ++ L + + + + P +D + TL++ +S SG
Sbjct: 28 GMGGSGIAGRIISILLLEKSFQGPVFVVKDYRLPRFVDGK----------TLLIAVSYSG 77
Query: 256 GTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLL 292
T ET + + E +K + +AIT L
Sbjct: 78 NTEETLSAVEEAKKKGAKV--------IAITSGGRLE 106
>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional.
Length = 183
Score = 29.4 bits (66), Expect = 4.5
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 224 IDNTDPAGIDHQIAQLGPELASTLVVV--ISKSGGTPETRNGLLEVQKAFREAGL----- 276
I T ID ++ L + L++V SK G TP+ L +QKA+ + G
Sbjct: 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGF 63
Query: 277 ---EFAKQGVAITQENSLLDNTVRIEGWLARFPMF 308
+F Q +E T W FPMF
Sbjct: 64 PCNQFLGQEPGSDEEIKTYCRTT----WGVTFPMF 94
>gnl|CDD|225097 COG2186, FadR, Transcriptional regulators [Transcription].
Length = 241
Score = 29.3 bits (66), Expect = 4.8
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 558 VEPLTIDEVAERCHTPEDIEMIYKIIAHMAANDRALIA 595
+EP AER T EDI + + M A A
Sbjct: 110 LEPEAAALAAER-ATDEDIARLRAALEEMEAALEDGEA 146
>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase)
domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. SIS domains are also
found in proteins that regulate the expression of genes
involved in synthesis of phosphosugars.
Length = 120
Score = 28.3 bits (64), Expect = 5.1
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 192 SILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN------TDPAGIDHQIAQLGPELAS 245
++ VG GGS L + A+ L + F+ N T P +L +
Sbjct: 1 NVFFVGCGGS-LADMYPAKYFLKKESKLPV-FVYNAAEFLHTGPK-------RLTEK--- 48
Query: 246 TLVVVISKSGGTPET 260
++V++ S SG T ET
Sbjct: 49 SVVILASHSGNTKET 63
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 29.4 bits (66), Expect = 6.7
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 95 GLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELE--KGAIANPDEGR-MVGHYWLRKPEL 151
G LD + V FT EF +E + K E E G N +E VG ++ K +
Sbjct: 1404 GYELDATPVDFTIEFNQEEALKVTKTNKLFIEFEDSIGNQLNAEEHTGNVGEEYVFKAKN 1463
Query: 152 APNSFLKSQIETTLDAVRKFADEVVSG----KIKPPSSPEGRFTSILSVGIGGSALG 204
+ Q T D KI PS+ E T +L G+ S G
Sbjct: 1464 PGHYKEGDQPITFEPTEPPKPDPEKRLDSNNKIDLPSTGEEFLTFLLITGLFLSTAG 1520
>gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid)
hydrolase-like proteins. Peptidase M20 family,
Poly(aspartic acid) hydrolase (PAA hydrolase)-like
subfamily. PAA hydrolase enzymes are involved in
alpha,beta-poly(D,L-aspartic acid) (tPAA)
biodegradation. PAA is being extensively studied as a
replacement for commercial polycarboxylate components
since it can be degraded by enzymes from isolated tPAA
degrading bacteria. Thus far, two types of PAA degrading
bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2)
have been investigated in detail; the former can
completely degrade tPAA of low-molecular weights below
5000, while the latter can degrade high molecular weight
tPAA to release oligo(aspartic acid) (OAA) as a product,
suggesting two kinds of PAA degrading enzymes. It has
been shown that PAA hydrolase-1 from Sphingomonas sp.
KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to
produce OAA, and it is suggested that PAA hydrolase-2
hydrolyzes OAA to aspartic acid.
Length = 359
Score = 29.1 bits (66), Expect = 6.7
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 167 AVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDN 226
A+ + AD + PS+P+ F +G G S AE L +R
Sbjct: 194 AIAELAD------WRVPSAPKTTFNVGR-IGGGTSVNAIAAEAEME------LDLRSNSR 240
Query: 227 TDPAGIDHQIAQL 239
A ++ +
Sbjct: 241 DALAAVEREFLAA 253
>gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and
polyadenylation) factor [RNA processing and
modification].
Length = 660
Score = 29.2 bits (65), Expect = 7.2
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 79 ELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEEL 127
+LWK Y ++ EL L +R +FV E P + +A + +E+
Sbjct: 197 KLWKDYENF-----ELELNKITAR-----KFVGETSPIYMSARQRYQEI 235
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 28.5 bits (63), Expect = 7.3
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 107 DEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLD 166
++F+ E+ P + +A+E +K ANPD MV ++ +++ LD
Sbjct: 89 EKFINELLPVIDSLDRALEVADK---ANPDMSAMV-------------EGIELTLKSMLD 132
Query: 167 AVRKFADEVVS 177
VRKF EV++
Sbjct: 133 VVRKFGVEVIA 143
>gnl|CDD|163566 TIGR03854, F420_MSMEG_3544, probable F420-dependent oxidoreductase,
MSMEG_3544 family. Coenzyme F420 has a limited
phylogenetic distribution, including methanogenic
archaea, Mycobacterium tuberculosis and related species,
Colwellia psychrerythraea 34H, Rhodopseudomonas
palustris HaA2, and others. Partial phylogenetic
profiling identifies protein subfamilies, within the
larger family called luciferase-like monooxygenanases
(pfam00296), that appear only in F420-positive genomes
and are likely to be F420-dependent. This model
describes a small family, closely related to other such
families in the putative F420-binding region,
exemplified by MSMEG_3544 in Mycobacterium smegmatis
[Unknown function, Enzymes of unknown specificity].
Length = 290
Score = 28.7 bits (64), Expect = 9.5
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 15/56 (26%)
Query: 74 EKDPRELWKRYVDWLYQHKELGLYLDV-------------SRVGFTDEFVEEMEPR 116
+ DP EL W H+ + YLD F D FV E+ PR
Sbjct: 235 DVDPAELIAV--GWAQLHRRIDAYLDAGLTKFVIRPAGTGDWDAFLDRFVTELLPR 288
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 28.4 bits (64), Expect = 9.6
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 44 LVQTQSVAREISADLSNTNDVVPKKAKNGLEKDPREL-WKRYVDWLYQHKELGLYLD 99
L Q ++ RE++A L N VV + AK+G ++ REL W + D+LY E LD
Sbjct: 192 LAQLRARTRELAAKLLEKNPVVLRAAKDGFKR-VRELTWDQAEDYLYAKLEQANSLD 247
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,123,330
Number of extensions: 3269676
Number of successful extensions: 3274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3193
Number of HSP's successfully gapped: 48
Length of query: 619
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 516
Effective length of database: 6,369,140
Effective search space: 3286476240
Effective search space used: 3286476240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)