RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007074
(619 letters)
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 482 bits (1243), Expect = e-166
Identities = 130/504 (25%), Positives = 200/504 (39%), Gaps = 75/504 (14%)
Query: 87 WLYQHKELGLYLDVSRV-------GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGR 139
+ H + L D S + G TDE V+ +E + +A +
Sbjct: 6 IHHHHHHMSLKFDFSNLFEPNISGGLTDEDVKSVEEKVTSAVRNF--------------- 50
Query: 140 MVGHYWLRKPELAPNSFLKSQIETTLDAVRKFADEVVS--GKIKPPSSPEGRFTSILSVG 197
++ FA S +K F +++ +G
Sbjct: 51 -------------------------VENTPDFAKLDRSWIDSVKSLEDWIINFDTVVVLG 85
Query: 198 IGGSALGPQFVAEALAP----------DNPPLKIRFIDNTDPAGIDHQIAQLGPELASTL 247
IGGS LG + +L P N ++ +DN DP + + ++ P+ +TL
Sbjct: 86 IGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPK--TTL 143
Query: 248 VVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGWLARFPM 307
VISKSG T E + GL+ + + T + E +
Sbjct: 144 FNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLVKEEGFRSLEV 203
Query: 308 FDWVGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWA 367
VGGR S ++ VGLL A +GID+ E+ GA E + + NPAA++AL Y
Sbjct: 204 PPGVGGRFSVLTPVGLLSAMAEGIDIDELHEGAKDAFEKSMKENILENPAAMIALTHYLY 263
Query: 368 SDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQH 427
+ G V++ Y + ++ + +QL ESLGK ++L G V G T G+TDQH
Sbjct: 264 LNK-GKSISVMMAYSNRMIYLVDWYRQLWAESLGKRYNLKGEEVFTGQTPVKALGATDQH 322
Query: 428 AYIQQLREGVHNFFATFIEVLRDR-----PPGHDWELE--PGVTCGDYLFGMLQGTRSAL 480
+ IQ EG ++ TF+ V P EL + L GT AL
Sbjct: 323 SQIQLYNEGPNDKVITFLRVENFDREIVIPETGRAELSYLARKKLSELLLAEQTGTEEAL 382
Query: 481 YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
N+R ++ VT +TP +VG A YE A L+ IN + QPGVE GKK ++
Sbjct: 383 RENNRPNMRVTFDGLTPYNVGQFFAYYEAATAFMGYLLEINPFDQPGVELGKKITFALMG 442
Query: 541 LQKRVLAVLNEASCKEPVEPLTID 564
+ KE + + I+
Sbjct: 443 REG------YTYEIKERSKKVIIE 460
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 416 bits (1072), Expect = e-141
Identities = 110/467 (23%), Positives = 184/467 (39%), Gaps = 59/467 (12%)
Query: 94 LGLYLDVSRV--GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPEL 151
+ + D S + ++ + +AA L + D +G W+ P
Sbjct: 1 MAISFDYSNALPFMQENELDYLSEFVKAAHHM---LHERKGPGSD---FLG--WVDWPIR 52
Query: 152 APNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEA 211
+ +++ A+ + + +++ +GIGGS LG + EA
Sbjct: 53 YDKN--------EFSRIKQAAERIRNH-----------SDALVVIGIGGSYLGARAAIEA 93
Query: 212 LAPD-----NPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265
L+ N +I F N I H + L + + VISKSG T E
Sbjct: 94 LSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGK--DLSINVISKSGTTTEPAIAFR 151
Query: 266 EVQKAFREA-GLEFAKQGVAITQEN--SLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVG 322
+ + G E A++ + +T + L EG+ F + D +GGR S ++AVG
Sbjct: 152 IFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGY-ETFVIPDNIGGRYSVLTAVG 210
Query: 323 LLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYK 382
LLP A+ G+++ M+ GA+ L N + A G +++ Y+
Sbjct: 211 LLPIAVAGLNIDRMMEGAASAYHKYNNPDLLTNESYQYAAVRNILYRK-GKAIELLVNYE 269
Query: 383 DSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFA 442
SL S + +QL ES GK+ +GL +TD H+ Q ++EG N
Sbjct: 270 PSLHYVSEWWKQLFGESEGKD--------QKGLFPASVDFTTDLHSMGQYVQEGRRNLIE 321
Query: 443 TFIEVLRDRPPGHDWELEP---------GVTCGDYLFGMLQGTRSALYANDRESVTVTVQ 493
T + V + + E G T + QGT A ++ V +
Sbjct: 322 TVLHVKKPQIELTIQEDPENIDGLNFLAGKTLDEVNKKAFQGTLLAHVDGGVPNLIVELD 381
Query: 494 EVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
E+ + G +V +E+A GI L+ +N + QPGVEA KK +L
Sbjct: 382 EMNEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAYKKNMFALLG 428
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 404 bits (1041), Expect = e-136
Identities = 106/466 (22%), Positives = 182/466 (39%), Gaps = 62/466 (13%)
Query: 95 GLYLDVSRV--GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELA 152
+ LD S+ F + +++ + ++ + + +G A D W+ P
Sbjct: 6 HIQLDFSKTLEFFGEHELKQQQEIVKSIH---KTIHEGTGAGSD-----FLGWVDLPV-- 55
Query: 153 PNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEAL 212
+ + + + + ++ +GIGGS LG + E L
Sbjct: 56 ------DYDKEEFSRIVEASKRIKEN-----------SDVLVVIGIGGSYLGARAAIEML 98
Query: 213 APD----NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQ 268
N +I F+ N + ++ V VISKSG T E +
Sbjct: 99 TSSFRNSNEYPEIVFVGNHLSSTYTKELVDYL-ADKDFSVNVISKSGTTTEPAVAFRLFK 157
Query: 269 KAFREA--GLEFAKQGVAIT-QENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLP 325
+ E E K+ A T +E L EG+ F + D VGGR S ++AVGLLP
Sbjct: 158 QLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGY-ETFIVPDDVGGRYSVLTAVGLLP 216
Query: 326 AALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSL 385
A GI++ M+ GA+ E + L N A A G +++ Y+ S+
Sbjct: 217 IATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAK-GYTTEMLINYEPSM 275
Query: 386 LLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFI 445
F+ + +QL ES GK+ +G+ +TD H+ Q ++EG F T +
Sbjct: 276 QYFNEWWKQLFGESEGKD--------FKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVV 327
Query: 446 EVLRDRPPGHDWELEP------------GVTCGDYLFGMLQGTRSALYANDRESVTVTVQ 493
+V P +D +E G T + +GT A ++ V +
Sbjct: 328 KVNH---PKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIP 384
Query: 494 EVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVL 539
++ + G +V +E A + + +N ++QPGVEA K+ +L
Sbjct: 385 QLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALL 430
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 307 bits (790), Expect = 3e-99
Identities = 120/433 (27%), Positives = 167/433 (38%), Gaps = 49/433 (11%)
Query: 129 KGAIANPDEGRMVGH---YWLRKPELAPNSFL----KSQIETTLDAVRKFADEVVSGKIK 181
G + L P S L + TL VR++ + +
Sbjct: 10 PGFPEALSRHGPLLEEARRRLLAKRGEPGSMLGWMDLPEDTETLREVRRYRE---ANP-- 64
Query: 182 PPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGP 241
+ +GIGGSALGP+ + A + ++D+ +P I + L P
Sbjct: 65 -------WVEDFVLIGIGGSALGPKALEAAFNESGV--RFHYLDHVEPEPILRLLRTLDP 115
Query: 242 ELASTLVVVISKSGGTPETRNGLLEVQKAFREA-GLEFAKQGVAIT-QENSLLDNTVRIE 299
TLV +SKSG T ET GL K + G ++ + V T + L E
Sbjct: 116 R--KTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAERE 173
Query: 300 GWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAAL 359
G F + VGGR S +S VGLLP A G D+ +L GA +E L +
Sbjct: 174 GL-KAFAIPKEVGGRFSALSPVGLLPLAFAGADLDALLMGARKANETALAP-LEESLPLK 231
Query: 360 LALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYG 419
AL + V + Y + L + QL ESLGK D G RV G T
Sbjct: 232 TALLLHLHR---HLPVHVFMVYSERLSHLPSWFVQLHDESLGKV-DRQGQRV--GTTAVP 285
Query: 420 NKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGD---YLFG----- 471
G DQHA +Q REG + + P D E+ P V + YLFG
Sbjct: 286 ALGPKDQHAQVQLFREGPLDKLLALVIP---EAPLEDVEI-PEVEGLEAASYLFGKTLFQ 341
Query: 472 ----MLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPG 527
+ T AL + + + EV+P +VG L+ L +NA+ QPG
Sbjct: 342 LLKAEAEATYEALAEAGQRVYALFLPEVSPYAVGWLMQHLMWQTAFLGELWEVNAFDQPG 401
Query: 528 VEAGKKAAGEVLA 540
VE GK + LA
Sbjct: 402 VELGKVLTRKRLA 414
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 258 bits (662), Expect = 8e-79
Identities = 137/490 (27%), Positives = 218/490 (44%), Gaps = 58/490 (11%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
+Y D S+ D ++ + + + K M GA N E R V H LR
Sbjct: 41 NIYFDYSKNLINDYILKSLLESAEKSSLKDKIKQMF---NGAKINSTEHRAVLHTALRDL 97
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
P ++ ++ V++ ++VVSG+ + S + T I+++GIGGS LGP
Sbjct: 98 SSTPLIVDGQDIRQEVTKEKQRVKELVEKVVSGRWRGFSG--KKITDIVNIGIGGSDLGP 155
Query: 206 QFVAEALAP-DNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGL 264
+ V AL P LK+ F+ N D + + + PE +TL+++ SKS T ET
Sbjct: 156 KMVVRALQPYHCTDLKVHFVSNVDADSLLQALHVVDPE--TTLLIIASKSFSTEETLLNS 213
Query: 265 LEVQKAFREAGLE---FAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGGRTSE 317
+ ++ + + A VAI+ +++ + L + M+DWVGGR S
Sbjct: 214 ISAREWLLDHYEDEKAVANHFVAISS------KLDKVKEFGIDLEHCYKMWDWVGGRYSL 267
Query: 318 MSAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKD 375
S++G + A G D ++LAGA +D+ + T N ++AL + S S+
Sbjct: 268 WSSIG-MSIAFAIGYDNFEKLLAGAYSVDKHFKETEFSKNIPVIMALLASYYSCTYNSQS 326
Query: 376 MVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQL 433
+LPY + L F YLQQ MES GK ++ G VN G+ ++G G+ QHA+ Q L
Sbjct: 327 QALLPYDERLCYFVDYLQQADMESNGKSVNIAGETVNYQTGVVLWGGVGTNGQHAFHQLL 386
Query: 434 REGVHNFFATFIEVLRDRPP---GHDW----------ELEPGVTCGD-----YLFGMLQG 475
+G FI + L G + G+ +
Sbjct: 387 HQGNIFIPVDFIAIATSHHNYDNHQQALLANCFAQSQALMFGQSYDMVYNELLKSGLNET 446
Query: 476 TRSAL-----YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEA 530
L +R S T+ + E++P S+GAL+ALYE + + L +IN+Y Q GVE
Sbjct: 447 QAKELAAHKVIPGNRPSTTILLDELSPYSLGALIALYEHKIFVQGVLWDINSYDQWGVEL 506
Query: 531 GKKAAGEVLA 540
GKK +L
Sbjct: 507 GKKLGKNILK 516
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 256 bits (656), Expect = 2e-77
Identities = 148/517 (28%), Positives = 220/517 (42%), Gaps = 63/517 (12%)
Query: 73 LEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEEL 127
EKD + + ++ + L+LD S+ DE + + E +A KAM
Sbjct: 75 FEKDHQRFQRYSIEIDLHSDDNFLFLDYSKSHINDEIKDALVALAEERGVRAFAKAMF-- 132
Query: 128 EKGAIANPDEGRMVGHYWLRKPELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPP 183
G N E R V H LR P + S + L ++ F + V SG+ K
Sbjct: 133 -DGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWK-- 189
Query: 184 SSPEGRFTSILSVGIGGSALGPQFVAEALAP-DNPPLKIRFIDNTDPAGIDHQIAQLGPE 242
+I+++GIGGS LGP V EAL P L F+ N D + + Q+ E
Sbjct: 190 GQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLE 249
Query: 243 LASTLVVVISKSGGTPET-------RNGLLE-VQKAFREAGLEFAKQGVAITQENSLLDN 294
T+ ++ SK+ T ET RN L+ +++ AK VA++ N
Sbjct: 250 --ETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALST------N 301
Query: 295 TVRIEGW---LAR-FPMFDWVGGRTSEMSAVGLLPAALQ-GIDV-REMLAGASLMDEANR 348
T ++ + F +DWVGGR S SA+GL L G D E L GA +MD
Sbjct: 302 TEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGL-SVMLSIGYDNFVEFLTGAHVMDNHFA 360
Query: 349 TTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDG 408
+T N +LAL W ++ GS+ VLPY L YLQQL MES GK
Sbjct: 361 STPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKS 420
Query: 409 NRVNQ--GLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPP---GHDWELEPGV 463
V G V+G G+ QHA+ Q + +G FI ++ + H +
Sbjct: 421 GAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQNRVGDHHRTLMSNFF 480
Query: 464 TCGDYL-FG------MLQGTRSALYANDRE-------------SVTVTVQEVTPRSVGAL 503
+ L G + +S + + E S ++ V +TPR++GA+
Sbjct: 481 AQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRALGAI 540
Query: 504 VALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
+A+YE V + ++ IN+Y Q GVE GK A +L
Sbjct: 541 IAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILP 577
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 254 bits (650), Expect = 5e-77
Identities = 140/489 (28%), Positives = 208/489 (42%), Gaps = 59/489 (12%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
LY+D S+ T E + + + M G N E R V H LR P
Sbjct: 44 DLYIDYSKHRVTRETLALLIDLARTAHLEERRDQMF---AGVHINTSEDRAVLHTALRLP 100
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
A + + + LDA+ F D + SG+ + R ++++++GIGGS LGP
Sbjct: 101 RDAELVVDGQDVVTDVHAVLDAMGAFTDRLRSGEWT--GATGKRISTVVNIGIGGSDLGP 158
Query: 206 QFVAEALAPD-NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGL 264
V +AL + + RF+ N DPA + +A L P +TL +V SK+ T ET
Sbjct: 159 VMVYQALRHYADAGISARFVSNVDPADLIATLADLDPA--TTLFIVASKTFSTLETLTNA 216
Query: 265 LEVQKAFREAGLE--FAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGGRTSEM 318
++ +A + ++ VA++ N ++ + F +DWVGGR S
Sbjct: 217 TAARRWLTDALGDAAVSRHFVAVST------NKRLVDDFGINTDNMFGFWDWVGGRYSVD 270
Query: 319 SAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDM 376
SA+G L G D + LAG ++D T L +N LL L W S+ G++
Sbjct: 271 SAIG-LSLMTVIGRDAFADFLAGFHIIDRHFATAPLESNAPVLLGLIGLWYSNFFGAQSR 329
Query: 377 VVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQLR 434
VLPY + L F YLQQL MES GK DG+ V+ G +G G+ QHA+ Q L
Sbjct: 330 TVLPYSNDLSRFPAYLQQLTMESNGKSTRADGSPVSADTGEIFWGEPGTNGQHAFYQLLH 389
Query: 435 EGVHNFFATFIEVLRDRPPG---------HDWELEPGVTCGDYLFGMLQGTRSALYAND- 484
+G A FI + HD + L T + A+
Sbjct: 390 QGTRLVPADFIGFAQPLDDLPTAEGTGSMHDLLMSNFFAQTQVL--AFGKTAEEIAADGT 447
Query: 485 -------------RESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAG 531
R S ++ +TP +G L+ALYE V + I+++ Q GVE G
Sbjct: 448 PAHVVAHKVMPGNRPSTSILASRLTPSVLGQLIALYEHQVFTEGVVWGIDSFDQWGVELG 507
Query: 532 KKAAGEVLA 540
K A +L
Sbjct: 508 KTQAKALLP 516
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase
phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella
melitensis BV}
Length = 553
Score = 254 bits (650), Expect = 6e-77
Identities = 145/489 (29%), Positives = 206/489 (42%), Gaps = 57/489 (11%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
L D S+ DE + + + AM G N E R V H LR
Sbjct: 51 DLLFDWSKCRVNDETMALLKELAVAADVEGRRAAMF---AGEHINNTEDRAVLHVALRDT 107
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
+ ++ LD + FAD + SG +K + + T I+++GIGGS LGP
Sbjct: 108 SSKEVLVDGHNVLPDVKHVLDRMAAFADGIRSGALKGATGR--KITDIVNIGIGGSDLGP 165
Query: 206 QFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265
ALAP + + F+ N D A I ++ L P STL++V SK+ T ET
Sbjct: 166 VMATLALAPYHDEPRAHFVSNIDGAHIADTLSPLDPA--STLIIVASKTFTTIETMTNAQ 223
Query: 266 EVQKAFREAGLE--FAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGGRTSEMS 319
+K + E A++ ++ + R F +DWVGGR S S
Sbjct: 224 TARKWVADTLGEAAVGAHFAAVST------ALDKVAAFGIPEDRVFGFWDWVGGRYSVWS 277
Query: 320 AVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMV 377
A+GL P + G D R+ LAGA MD R L N +L L YW G
Sbjct: 278 AIGL-PVMIAVGPDNFRKFLAGAHAMDVHFRDAPLEKNLPVMLGLIGYWHRAICGYGSRA 336
Query: 378 VLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQLRE 435
++PY L YLQQL MES GK LDG V+ G V+G G+ QHA+ Q L +
Sbjct: 337 IIPYDQRLSRLPAYLQQLDMESNGKSVTLDGKPVSGPTGPVVWGEPGTNGQHAFFQLLHQ 396
Query: 436 GVHNFFATFIEVLRDRPPG----HDW----------ELEPGVTCGD-----YLFGMLQGT 476
G FI + P H+ L G T + +
Sbjct: 397 GTDTIPLEFIVAAKGHEPTLDHQHEMLMANCLAQSEALMKGRTLDEARAQLQAKNLPASQ 456
Query: 477 RSAL-----YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAG 531
+ ++ +R S+T+ + P ++G L+ALYE V + A + INA+ Q GVE G
Sbjct: 457 VERIAPHRVFSGNRPSLTLIHDMLDPYTLGRLIALYEHRVFVEAQIFGINAFDQWGVELG 516
Query: 532 KKAAGEVLA 540
K+ A E+L
Sbjct: 517 KELATELLP 525
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Length = 557
Score = 254 bits (650), Expect = 6e-77
Identities = 139/500 (27%), Positives = 215/500 (43%), Gaps = 76/500 (15%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
+ +D S+ + E ++ + +AA M G+ N E R V H LR
Sbjct: 50 HILVDYSKNLVSKEVMQMLVELAKSRGVEAARDNMF---SGSKINYTEDRAVLHVALRNR 106
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
P + ++ LD ++ F V SG K T I+++GIGGS LGP
Sbjct: 107 SNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWK--GYTGKSITDIINIGIGGSDLGP 164
Query: 206 QFVAEALAP-DNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGL 264
V EAL P ++ F+ N D I +A L PE ++L ++ SK+ T ET
Sbjct: 165 LMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPE--TSLFIIASKTFTTQETITNA 222
Query: 265 LEVQKAFREAGLE---FAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGGRTSE 317
++ F EA + AK VA++ NT +++ + F +DWVGGR S
Sbjct: 223 ETAKEWFLEAAKDPSAVAKHFVALST------NTAKVKEFGIDPQNMFEFWDWVGGRYSL 276
Query: 318 MSAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKD 375
SA+G L AL G D ++L+GA MD+ T L N LLAL W + G +
Sbjct: 277 WSAIG-LSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCET 335
Query: 376 MVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQL 433
+LPY + F+ Y QQ MES GK G RV+ G V+G G+ QHA+ Q +
Sbjct: 336 HALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLI 395
Query: 434 REGVHNFFATFIEVLRDRPPG-----HDW-----------------------ELEPGVTC 465
+G F+ ++ + P H EL+
Sbjct: 396 HQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKLPEEARKELQAA--- 452
Query: 466 GDYLFGMLQGTRSAL-----YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNI 520
G L + +R + ++ ++TP +GAL+A+YE + + + +I
Sbjct: 453 -----GKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDI 507
Query: 521 NAYHQPGVEAGKKAAGEVLA 540
N++ Q GVE GK+ A ++
Sbjct: 508 NSFDQWGVELGKQLAKKIEP 527
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 253 bits (649), Expect = 1e-76
Identities = 156/500 (31%), Positives = 218/500 (43%), Gaps = 73/500 (14%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
G+YLD SR T E ++ + E + A K M G N E R V H LR P
Sbjct: 51 GVYLDFSRQKITLETLQHLVNLAHERQVPAMVKRMF---SGEKINQTENRAVLHVALRMP 107
Query: 150 ELAPNSFL-----KSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALG 204
E + + ++ L +R F+++V SG+I+ + +++S+GIGGS LG
Sbjct: 108 EGSEPVHVDGKNVLDEVHAVLRRIRVFSEKVRSGEIR--GHTGKKLVNVISIGIGGSYLG 165
Query: 205 PQFVAEALAPD------NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTP 258
+FV ALA + +I F+ N DP + PE TLVVVISK+ T
Sbjct: 166 TEFVHLALAAEGYAAEKAHGRQIHFLANVDPVDVWLAERGFDPE--ETLVVVISKTFTTA 223
Query: 259 ET-------RNGLLEVQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGW---LAR-FPM 307
ET R+ L K A A++ N + R F
Sbjct: 224 ETMMNARSVRDWYLHHYKGDERA---LGAHFCAVST------NLDGTSKFGIQSDRVFGF 274
Query: 308 FDWVGGRTSEMSAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWY 365
+DWVGGR S SAVG+LP ALQ G DV +E L GA MD +T L +N L+ L
Sbjct: 275 WDWVGGRYSVTSAVGILPLALQYGYDVAQEFLNGAHAMDVHFKTAELADNLPMLMGLISV 334
Query: 366 WASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGS 423
W + G ++ VLPY +LL F ++QQL MES GK +DG ++ G +G G+
Sbjct: 335 WNATFFGYSNVAVLPYAQALLRFPAHIQQLTMESNGKRVTMDGKTLDFDVGEIFFGEPGT 394
Query: 424 TDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFG---------MLQ 474
QH++ Q + +G A FI + + E V+ D L
Sbjct: 395 NGQHSFYQLIHQG-RVIPAEFIGFCKSQRAIKL--KEEPVSNHDELMSNFFAQPDALAFG 451
Query: 475 GTRSALYAN--------------DRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNI 520
T L DR S + E++P +G L+ALYE V + L I
Sbjct: 452 KTPEELRKEGIPEKLVPHKTFPGDRPSCMLLFPEISPFHIGQLLALYEHRVAVEGWLWGI 511
Query: 521 NAYHQPGVEAGKKAAGEVLA 540
N++ Q GVE GK A V
Sbjct: 512 NSFDQWGVELGKVLAKGVRG 531
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 252 bits (646), Expect = 3e-76
Identities = 138/489 (28%), Positives = 214/489 (43%), Gaps = 57/489 (11%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
+ +D S+ E ++ + E Q+A AM KG N E R V H LR
Sbjct: 73 DILVDYSKNLVNAETMQHLFALAKETDLQSAITAMF---KGEAINQTEDRAVLHTALRNR 129
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
+P + + L ++ F++ V+ G+ K T ++++GIGGS LGP
Sbjct: 130 SNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWK--GFTGKAITDVVNIGIGGSDLGP 187
Query: 206 QFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLL 265
V EAL P L + F+ N D + + + PE +TL +V SK+ T ET
Sbjct: 188 YMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPE--TTLFLVASKTFTTQETMTNAH 245
Query: 266 EVQKAFREAGLE---FAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVGGRTSEM 318
+ F +A + AK A++ N + + F +DWVGGR S
Sbjct: 246 TARDWFLKAAGDEAHVAKHFAALST------NGKAVAEFGIDTDNMFEFWDWVGGRYSLW 299
Query: 319 SAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDM 376
SA+GL L G D E+LAGA MD+ T +N +LAL W ++ G++
Sbjct: 300 SAIGL-SIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESE 358
Query: 377 VVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQLR 434
+LPY L F+ Y QQ MES GK D +GN V G ++G G+ QHA+ Q +
Sbjct: 359 AILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIH 418
Query: 435 EGVHNFFATFIEVLRDRPP---GHDWEL---------------EPGVTCGDYLFGMLQGT 476
+G FI H + V G
Sbjct: 419 QGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAE 478
Query: 477 RSAL-----YANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAG 531
+AL + +R + ++ V+++TPR++G L+A+YE + + + NI ++ Q GVE G
Sbjct: 479 IAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELG 538
Query: 532 KKAAGEVLA 540
K+ A ++L
Sbjct: 539 KQLANQILP 547
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 250 bits (641), Expect = 3e-75
Identities = 134/518 (25%), Positives = 212/518 (40%), Gaps = 86/518 (16%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
Y+D+SR ++++ + ++ E + + G N E R V H LR P
Sbjct: 63 NFYMDLSRQRYSEKTLNKLVEYAEEVELKKKVEKTF---MGEKVNMTENRSVLHTALRIP 119
Query: 150 ELAPNSF--------LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGS 201
N+ + + L + K++D++ +G IK + +F +++ +GIGGS
Sbjct: 120 IEKINTHKIIIDNKNVLEDVHGVLKKIEKYSDDIRNGVIK--TCKNTKFKNVICIGIGGS 177
Query: 202 ALGPQFVAEALAP-----------------------DNPPLKIRFIDNTDPAGIDHQIAQ 238
LG +FV EA+ + +RF+ N DP ++ I
Sbjct: 178 YLGTEFVYEAMKYYYYNMELNKNEKDQVNNFNNNYDQDNVFNVRFLANVDPNDVNRAIQN 237
Query: 239 LGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLE---FAKQGVAITQENSLLD-- 293
L TLV++ISK+ T ET ++K + +K VA++ L D
Sbjct: 238 LDQY--DTLVIIISKTFTTAETMLNARSIKKWLSLKIKDDENLSKHMVAVSTNLKLTDEF 295
Query: 294 --NTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQ-GIDV-REMLAGASLMDEANRT 349
+ + F +DWVGGR S S+VG+LP ++ G R L G MDE
Sbjct: 296 GISRDNV------FEFWDWVGGRFSVTSSVGILPLSIAFGYKNMRNFLNGCHDMDEHFLH 349
Query: 350 TVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGN 409
L+ N LLAL ++ S K++ +LPY +LL FS ++QQL MES GK D +
Sbjct: 350 ADLKENIPVLLALTSFYNSHFFDYKNVAILPYFQNLLKFSAHIQQLSMESNGKSVDRNNQ 409
Query: 410 RVNQ--GLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPG---------HDW- 457
++ +G G+ QH++ Q + +G I P HD
Sbjct: 410 PIHYNTCQVYFGEPGTNGQHSFYQLIHQG-QVIPVELIGFKHSHFPIKFDKEVVSNHDEL 468
Query: 458 ---------ELEPGVTCGD-YLFGMLQGTRSALYAN-----DRESVTVTVQEVTPRSVGA 502
L G T L + +R S + E+ + G
Sbjct: 469 MTNFFAQADALAIGKTYEQVKEENEKNKMSPELLTHKVFNGNRPSTLLLFDELNFYTCGL 528
Query: 503 LVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
L++LYE + L+NIN++ Q GVE GK A EV
Sbjct: 529 LLSLYESRIVAEGFLLNINSFDQWGVELGKVLAKEVRN 566
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 248 bits (636), Expect = 2e-74
Identities = 137/498 (27%), Positives = 213/498 (42%), Gaps = 68/498 (13%)
Query: 95 GLYLDVSRVGFTDEFVEEM-----EPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
L+LD S+ DE + E + +++ +G N E R V H LR
Sbjct: 98 FLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVF---RGERVNTTENRPVLHIALRNR 154
Query: 150 ELAPNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGP 205
P + + LD +R F+++V +G+ K ++++GIGGS LGP
Sbjct: 155 SNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWK--GHTGKAIRHVVNIGIGGSDLGP 212
Query: 206 QFVAEALAP-DNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPET---- 260
EAL P L + F+ N D I + + E +TL +V SK+ T ET
Sbjct: 213 VMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIE--ATLFIVASKTFTTQETITNA 270
Query: 261 ---RNGLLE-VQKAFREAGLEFAKQGVAITQENSLLDNTVRIEGW---LAR-FPMFDWVG 312
R LL+ ++ + AK VA++ N +++ + F +DWVG
Sbjct: 271 LSARRALLDYLRSRGIDEKGSVAKHFVALST------NNQKVKEFGIDEENMFQFWDWVG 324
Query: 313 GRTSEMSAVGLLPAALQ-GIDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDG 370
GR S SA+GL P + G + E+L GA ++DE N LLAL W +
Sbjct: 325 GRYSMWSAIGL-PIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINF 383
Query: 371 VGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHA 428
G+ +LPY L YLQQL MES GK G V+ G ++G G+ QHA
Sbjct: 384 FGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHA 443
Query: 429 YIQQLREGVHNFFATFIEVLRDRPPG---HDW-----------------------ELEPG 462
+ Q + +G + FI ++ + H ELE
Sbjct: 444 FYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAA 503
Query: 463 VTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINA 522
L ++ + R S T+ ++ +TPR++GA++A+YE V + ++ I++
Sbjct: 504 GERSAEKINALLPHKT--FIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDS 561
Query: 523 YHQPGVEAGKKAAGEVLA 540
Y Q GVE GK A +L
Sbjct: 562 YDQWGVELGKVLAKSILP 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 6e-13
Identities = 104/603 (17%), Positives = 172/603 (28%), Gaps = 234/603 (38%)
Query: 22 KPLVILRKDSVTF----PTRFSKTPSLVQTQSVAREI-SADLSNTNDVVPKKAKNGLEKD 76
+PL L S+ PT + S +E + L + G D
Sbjct: 7 RPLT-LSHGSLEHVLLVPT------ASFFIASQLQEQFNKILPEPTE--------GFAAD 51
Query: 77 -----PRELWKR---YVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELE 128
P EL + YV L + ++G + V + T+ F+ + LE
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---------FENCY-----LE 97
Query: 129 KGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRK-----FADEVVSGKIKPP 183
I H LA L + +TTL ++ +++ + P
Sbjct: 98 GNDI----------H------ALAAK--LLQENDTTLVKTKELIKNYITARIMAKR--PF 137
Query: 184 SSPEGRFTSIL--SVGIGGSALGPQF---------VAE--ALAPDNPPLKIRFIDNTD-- 228
S L +VG G + L F E L L I +
Sbjct: 138 DKKS---NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 229 ---------------PAGIDHQIAQL--GPE-------LASTLV-------------VVI 251
G++ I + P L S + VV
Sbjct: 195 LSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 252 SKSGG-TPETRNGLLEVQKAFREAGLEFAKQGV----AITQENS---LLDNTVRIEGWLA 303
+K G TP E++ + G QG+ AI + +S + + L
Sbjct: 253 AKLLGFTPG------ELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL- 303
Query: 304 RFPMFDWVGGRTSE-MSAVGLLPAALQG-IDVRE-----MLA--GASL------MDEANR 348
F ++G R E L P+ L+ ++ E ML+ + +++ N
Sbjct: 304 ----F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 349 TT--------VLRN---------NPAALLALCWYW----ASDGVG-SKDMVVLPYKDSLL 386
L N P +L L A G+ S+ +P+ + L
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKL 414
Query: 387 LFS-RYL--------------QQLVMESL-GKEFDLDGNRVNQGLTVYGNKGSTDQHAYI 430
FS R+L L+ + L + + + VY +D
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSD----- 467
Query: 431 QQLREGVHNFFATFIEVLRDRPPGHDWELE------------PGVTCGDYLFGML----- 473
LR + ++ + P WE PG G G+L
Sbjct: 468 --LRVLSGSISERIVDCIIRLPV--KWETTTQFKATHILDFGPGGASG---LGVLTHRNK 520
Query: 474 QGT 476
GT
Sbjct: 521 DGT 523
Score = 59.3 bits (143), Expect = 3e-09
Identities = 64/399 (16%), Positives = 120/399 (30%), Gaps = 120/399 (30%)
Query: 277 EFAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVG----LLPAALQGID 332
+F K T+ + D + +F + V E S VG +L L +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGY--V-SSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 333 VREMLAG------ASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLL 386
L G A+ + + N TT+++ L + A +S L
Sbjct: 93 -NCYLEGNDIHALAAKLLQENDTTLVK---TKELIKNYITARIMAKRP---FDKKSNSAL 145
Query: 387 LFSRYLQQLVMESLGKEFDLDGNRVNQG----LTVYGNKGSTDQHAYIQQLRE------- 435
V +G + ++G +G+TD Y ++LR+
Sbjct: 146 F---------------------RAVGEGNAQLVAIFGGQGNTD--DYFEELRDLYQTYHV 182
Query: 436 GVHNFFATFIEVLRDR-----------PPGHD---W----ELEPGVTCGDYL------FG 471
V + E L + G + W P DYL
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK---DYLLSIPISCP 239
Query: 472 MLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLV-----NINAYHQP 526
++ + A Y + + T E+ GA + G+ ++ + ++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLVTAVAIAETDSWESFFVS 295
Query: 527 GVEA----------GKKAAGEVLALQKRVLAVLNEASCKEP-----VEPLTIDEVAERC- 570
+A +A +L +L E + P + LT ++V +
Sbjct: 296 VRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 571 ----HTPEDIEMIYKIIAHMAAN-DRALIAEGSCGSPRS 604
H P + + I+ N + L+ G P+S
Sbjct: 355 KTNSHLPAG-KQVE--IS--LVNGAKNLVV---SGPPQS 385
Score = 56.6 bits (136), Expect = 2e-08
Identities = 57/306 (18%), Positives = 96/306 (31%), Gaps = 102/306 (33%)
Query: 329 QGIDVREM---LAGAS-----LMDEANR----------TTVLRNNPAALLALCWYWASDG 370
QG + M L S + + A+ ++ NNP L G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-----TIHFGG 1678
Query: 371 VGSK-------DMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGS 423
K M+ D L + +++ S F + ++ T +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQF----- 1731
Query: 424 TDQ-------HAYIQQLRE-GV---HNFFA-----------------TF---IEVLRDRP 452
T Q A + L+ G+ FA + +EV+ R
Sbjct: 1732 T-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR- 1789
Query: 453 PGH-DWELEPGVTCGDYLFGMLQGTRSALYAN-DRESVTVTVQEVTPRSVGALVALYERA 510
G P G +GM+ + A+ +E++ V+ V R+ G LV
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT-GWLV------ 1841
Query: 511 VGIYASLVNINAYHQPG---VEAGKKAAGEVLALQKRVLAVLNEASCKE-PVEPL----T 562
+VN N V AAG++ AL V VLN ++ + L +
Sbjct: 1842 -----EIVNYNV---ENQQYV-----AAGDLRALDT-VTNVLNFIKLQKIDIIELQKSLS 1887
Query: 563 IDEVAE 568
++EV
Sbjct: 1888 LEEVEG 1893
Score = 47.0 bits (111), Expect = 2e-05
Identities = 69/373 (18%), Positives = 114/373 (30%), Gaps = 157/373 (42%)
Query: 88 LYQHKELGLYLDVSRV-GFTDEFVEEMEPRFQAAFKAMEELEKG-AIANPDEG------- 138
+ Q L Y+ +++ GFT E+ + A + L AIA D
Sbjct: 243 VIQ---LAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 139 -RMVGH-YW--LRKPELAPNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSIL 194
+ + ++ +R E PN+ L I D + + EG + +L
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSI---------LEDSLENN--------EGVPSPML 339
Query: 195 SVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQL--GPELASTLVVVIS 252
S+ S L + V + + N L PAG +I+ L G + +V+S
Sbjct: 340 SI----SNLTQEQVQDYVNKTNSHL---------PAGKQVEIS-LVNGAK-----NLVVS 380
Query: 253 KSGGTPETRNGL-LEVQKAFREAGLE-----FAKQGVAITQE---------NSLLDNTV- 296
G P++ GL L ++KA +GL+ F+++ + + + LL
Sbjct: 381 ---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 297 RIEGWLA-----------RFPMF----------------------------DWV------ 311
I L + P++ W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 312 ---------GGRTSEMSAVG-LLPAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLA 361
GG S +G L G VR ++AG L NP
Sbjct: 498 ATHILDFGPGG----ASGLGVLTHRNKDGTGVRVIVAGT-----------LDINPD---- 538
Query: 362 LCWYWASDGVGSK 374
D G K
Sbjct: 539 -------DDYGFK 544
Score = 40.8 bits (95), Expect = 0.002
Identities = 39/243 (16%), Positives = 62/243 (25%), Gaps = 55/243 (22%)
Query: 423 STDQHAYIQQLREGVHNFFATFIEVLR----DRPPGHDWEL------------EPGVTCG 466
T QL+E F E D P EL EP G
Sbjct: 23 PTASFFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS-KVG 78
Query: 467 DY---LFGMLQG-TRSALYANDRESVTVTV---QEVTPRSVGALVALYERAVGIYASLVN 519
+ L L L ND ++ + + T L+ Y A +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI--MAKRP 136
Query: 520 INAYHQPG-VEAGKKAAGEVLAL---QKRVLAVLNE-----ASCKEPVEPLTIDEVAERC 570
+ A + +++A+ Q E + V L I AE
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETL 195
Query: 571 ----HTPEDIEMIYK----IIAHMAANDRALIAEGSCGSPRSIKV--------YLGECNV 614
T D E ++ I+ + + P S + Y+ +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 615 DGL 617
G
Sbjct: 256 LGF 258
Score = 39.3 bits (91), Expect = 0.005
Identities = 42/311 (13%), Positives = 82/311 (26%), Gaps = 134/311 (43%)
Query: 57 DLSNTNDVVPKKAKNGLEKDPRELWKRYVDWLYQHKELGL-YLDVSR-------VGFT-- 106
DL T+ +++W R D + G LD+ + F
Sbjct: 1634 DLYKTSKAA------------QDVWNR-ADN-HFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 107 -----------------DEFVEEMEPRF-------------------------Q------ 118
+ + E F Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 119 --AAFKAMEELEKGAIANPDEGRMVGH----YWLRKPELAPNSFLKSQ-----IETTLDA 167
AAF+ ++ KG I P + GH Y + L S IE+ ++
Sbjct: 1740 EKAAFEDLK--SKGLI--PADATFAGHSLGEY----------AALASLADVMSIESLVEV 1785
Query: 168 VR---KFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPLKIRFI 224
V V P GR G A+ P VA + + + ++++
Sbjct: 1786 VFYRGMTMQVAV------PRDELGR------SNYGMIAINPGRVAASFSQE----ALQYV 1829
Query: 225 DNTDPAGIDHQIAQLGPEL-------ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLE 277
++ ++ + L V + G + + V + ++
Sbjct: 1830 -------VE-RVGKRTGWLVEIVNYNVENQQYVAA---GDLRALDTVTNVLNFIKLQKID 1878
Query: 278 FAKQGVAITQE 288
+ +++ E
Sbjct: 1879 IIELQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 3e-11
Identities = 80/563 (14%), Positives = 159/563 (28%), Gaps = 150/563 (26%)
Query: 90 QHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKP 149
Q++ Y D+ V F D FV+ + K ++++ K ++ + ++
Sbjct: 15 QYQ----YKDILSV-FEDAFVDNFD------CKDVQDMPKSILSKEEIDHIIM------- 56
Query: 150 ELAPNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVA 209
+ ++ S + +E+V +FV
Sbjct: 57 --SKDA--VSGTLRLFWTLLSKQEEMVQ----------------------------KFVE 84
Query: 210 EALAPDNPPLKIRF-IDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPET----RNGL 264
E L + L + P+ + + L + V + + R L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 265 LEVQKAFREAGLE----FAKQGVAITQENSLLDNTVRIEGWLARFP--MFDW--VGGRTS 316
LE++ A + ++ K VA+ + L V + +F W + S
Sbjct: 145 LELRPA-KNVLIDGVLGSGKTWVAL---DVCLSYKV-----QCKMDFKIF-WLNLKNCNS 194
Query: 317 EMSAVGLL--------PAALQGID--VREMLAGASLMDEANRTTVLRNNPAALLAL---- 362
+ + +L P D L S+ E R + LL L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 363 -CWYWASDGVGSKDMVVLPYK---DSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVY 418
W + + K ++ +K D L + + ++ D + ++
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPD-----EVKSLL 307
Query: 419 GNKGSTDQHAYIQQLRE---GVHNFFATFI-EVLRDRPPGHDWELEPGVTCGDYLFGMLQ 474
Q L + + I E +RD W+ V C D L +++
Sbjct: 308 LKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNC-DKLTTIIE 360
Query: 475 GTRSALYAND-----------RESVTVTVQ-------EVTPRSVGALVALYERAVGIYAS 516
+ + L + S + +V V +V + S
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----YS 415
Query: 517 LVNINA----YHQPGV--EAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTIDEVAERC 570
LV P + E K E AL + ++ N + +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDS----------DDL 464
Query: 571 HTPEDIEMIYKIIA-HMAANDRA 592
P + Y I H+ +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHP 487
Score = 47.5 bits (112), Expect = 1e-05
Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 69/252 (27%)
Query: 381 YKDSLLLFS---------RYLQQLVMESLGKEFDLD-----GNRVNQGLTVYGNKGSTDQ 426
YKD L +F + +Q + L KE ++D + V+ L ++
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFW------- 69
Query: 427 HAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEP-GVTCGDYLFGMLQGTRSALYANDR 485
+ + E V F EVLR + + + P + +Y R
Sbjct: 70 -TLLSKQEEMVQKFVE---EVLR---INYKFLMSPIKTEQRQ------PSMMTRMYIEQR 116
Query: 486 ESVTVTVQEVTPRSVG------AL-VALYERAVGIYASLVNINAYHQPGVEAGKKAAGEV 538
+ + Q +V L AL E + G +G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI------D------GVLGSG-- 162
Query: 539 LALQKRVLAVLNEASCKEPVEPLTIDEV----AERCHTPEDI-EMIYKIIAHMAANDRAL 593
K +A+ + V+ ++ + C++PE + EM+ K++ + N +
Sbjct: 163 ----KTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 594 IAEGSCGSPRSI 605
++ S I
Sbjct: 217 -SDHSSNIKLRI 227
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 43.0 bits (100), Expect = 2e-04
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 157 LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDN 216
++ I +D + E +I+ + G+GGS + + + N
Sbjct: 11 WENYILRRVDFPTSYVVEGEVVRIE-------AMPRLYISGMGGSGVVADLIRDFSLTWN 63
Query: 217 PPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQK 269
+++ + + D L++ +S SG T ET + ++
Sbjct: 64 WEVEVIAVKDYFLKARD------------GLLIAVSYSGNTIETLYTVEYAKR 104
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin
repressor-like, C-terminal D homeodomain-like,
DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex
aeolicus}
Length = 179
Score = 37.5 bits (87), Expect = 0.005
Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 67 KKAKNGLEKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEE 126
+ EK P EL + +++ LY+ K++ +Y+ + + +++F + + A + E+
Sbjct: 63 SLFEENKEKTPEELLEMFLEVLYREKKV-VYIFLFDLLCSEKFRNIYFEKIEDAKRRFEK 121
Query: 127 -LEKGAIANPDE--------GRMVGHYWLRKPELAPNSFLKSQIETTLD 166
LEK + + R + +++ K E FLK ++ L
Sbjct: 122 FLEKHFPSKAEILSEIILGFLRQLILHYVIKEE-RELPFLKEKLREGLK 169
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 33.6 bits (76), Expect = 0.15
Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 96 LYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPN- 154
+Y V + + K E D V L + N
Sbjct: 138 VYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLSESGGDVNA 197
Query: 155 --------SFLKSQIETTLDAVRKFADEVVSGKIKP 182
F E DA+R+F GK+KP
Sbjct: 198 AILDESGKKFAMEPEEFDSDALREFVMAFKKGKLKP 233
>3col_A Putative transcription regulator; structural genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum
WCFS1}
Length = 196
Score = 32.4 bits (74), Expect = 0.29
Identities = 6/108 (5%), Positives = 23/108 (21%), Gaps = 17/108 (15%)
Query: 78 RELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEEL-----EKGAI 132
R ++ D+ + + + ++ + + + L + I
Sbjct: 90 RLYVQQVYDYSLANPDSLTII--QQIKALNGQGMTISAADADPNNIVANLLTAAIDAKVI 147
Query: 133 ANPDEGRM----------VGHYWLRKPELAPNSFLKSQIETTLDAVRK 170
+ + DA+++
Sbjct: 148 KQLPVSLHMGVVFSTIHTHTTNISKGRYAQDQYTFGDIFQMIWDAMKQ 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.31
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 128 EKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIE 162
EK A+ + + L + AP +K+ +E
Sbjct: 18 EKQALKKL-QASLK----LYADDSAPALAIKATME 47
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 31.4 bits (71), Expect = 1.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 555 KEPVEPLTIDEVAERCHTP-EDIEMIYKIIAHMAANDRA 592
KE V T D V C TP D + +++A +A DR
Sbjct: 365 KEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRT 403
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Length = 196
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 16/108 (14%)
Query: 78 RELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEEL-----EKGAI 132
R +W + + + + F ++ L E+G
Sbjct: 89 RTMWLNIWNLAGSNLNAISNRVQYD-SLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVF 147
Query: 133 ANPDEGRM----------VGHYWLRKPELAPNSFLKSQIETTLDAVRK 170
D + + + L++ IE + DA+ K
Sbjct: 148 KPLDNEVLSGLSFEASVALARKHALGFYQLDDDALEAAIEASWDAIIK 195
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.3
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 108 EFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELAPNSFLKSQIETTLDA 167
E + ++ A+ +E + A + +E W ++ Q+E
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEE-------WNQR--------QSEQVEKNKIN 137
Query: 168 VRKFADE 174
R AD+
Sbjct: 138 NRI-ADK 143
Score = 27.8 bits (61), Expect = 7.7
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 14/65 (21%)
Query: 74 EKDPRELWKRYVDWLYQ-HKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAI 132
E D +W + K+L +E+ + + + +K
Sbjct: 100 ELDAASK-VMEQEWREKAKKDL------------EEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 133 ANPDE 137
PD
Sbjct: 147 QQPDA 151
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 30.7 bits (69), Expect = 1.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 555 KEPVEPLTIDEVAERCHTP-EDIEMIYKIIAHMAANDRA 592
K+ E +D+++ C TP E I +Y D+A
Sbjct: 326 KKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKA 364
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 30.6 bits (69), Expect = 1.9
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 236 IAQLGPELASTLVVVISKSGGTPETRNGLLEVQ----KAFRE-AG---LEFAKQGVAITQ 287
I+ G A + + + R L+ F AG + + ++
Sbjct: 719 ISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYISWNEKRQKYED 778
Query: 288 ENS-LLDNTVRI 298
LD+T RI
Sbjct: 779 LEHDQLDST-RI 789
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 30.3 bits (69), Expect = 2.0
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVA 284
TL++ ++SG +PE+ A + A++ V
Sbjct: 110 TLLISCARSGNSPEST------------AAVTLAEKIVD 136
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 30.2 bits (68), Expect = 2.4
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 236 IAQLGPELASTLVVVISKSGGTPETRNGLLEVQ----KAFRE-AG---LEFAKQGVAITQ 287
I+ G A + + + R L+ F AG + + ++
Sbjct: 722 ISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYISWNEKRQKYED 781
Query: 288 ENS-LLDNT 295
LD+T
Sbjct: 782 LEHDQLDST 790
>3sho_A Transcriptional regulator, RPIR family; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
1.80A {Sphaerobacter thermophilus}
Length = 187
Score = 29.1 bits (66), Expect = 2.9
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 196 VGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAG-IDHQIAQLGPELASTLVVVISKS 254
VG+G SA VA L L IR T+ + +A L P L++ +S
Sbjct: 45 VGMGFSAA----VAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPT---DLMIGVSVW 97
Query: 255 GGTPETRNGLLEVQKAFREAGLEFAKQGVAIT 286
+T + E G +A+T
Sbjct: 98 RYLRDT----VAALAGAAERG---VPT-MALT 121
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 28.9 bits (64), Expect = 3.0
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 103 VGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDE---GRMVGHYWLRKPELAPNS---- 155
+ + + F+ A ++ + A + D R++ + L+K E
Sbjct: 40 LPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITL 99
Query: 156 ------FLKSQIETTLDAVRKFADEVVSGKIKPPSSPE 187
+ E T + + +F + GKIKP +
Sbjct: 100 EEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQ 137
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 29.5 bits (67), Expect = 3.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 246 TLVVVISKSGGTPET 260
++V+ +SKSG T E+
Sbjct: 104 SVVITLSKSGDTKES 118
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome;
tagatose-6-phosphate ketose/aldose isomerase, structural
GEN PSI, MCSG; 1.80A {Escherichia coli}
Length = 384
Score = 29.6 bits (67), Expect = 3.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 246 TLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVA 284
L++ +SG +PE+ A +E A Q V
Sbjct: 105 LLLISFGRSGNSPESV------------AAVELANQFVP 131
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 29.4 bits (65), Expect = 3.5
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 28/135 (20%)
Query: 154 NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFV---AE 210
+ ++Q + + ++ V++G G G S + + + A
Sbjct: 18 SEVQETQEQAIIKGAHLVSEAVMNGG------------RFYVFGSGHSHMIAEEIYNRAG 65
Query: 211 ALAPDNPPLKIRFIDNTDPA---------GIDHQIAQLGPELASTLVVVISKSGGTPETR 261
LA L + + P G+ +L ++++IS SG
Sbjct: 66 GLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVTNKDVIMIISNSGRNTVP- 124
Query: 262 NGLLEVQKAFREAGL 276
+E+ R G
Sbjct: 125 ---VEMAIESRNIGA 136
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 28.9 bits (64), Expect = 4.5
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 156 FLKSQIETTLDAVRKFADEVVSGKIKP 182
++ + A+ +F + G +K
Sbjct: 209 VMQEEFSRDGKALERFLQDYFDGNLKR 235
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 29.1 bits (66), Expect = 4.6
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 245 STLVVVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAIT 286
+LV++ S SG TPET FA+ A+T
Sbjct: 75 KSLVILCSHSGNTPETV------------KAAAFARGKGALT 104
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 29.2 bits (64), Expect = 5.0
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 74 EKDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELE 128
+ ++++ + + + L V +E RF F + +LE
Sbjct: 537 SHLLKMIFQKVIFFESKVGSL-------------NSVRTLEKRFFEKFPEVNKLE 578
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1,
putative putative tagatose-6-phosphate ketose/A
isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae
TIGR4}
Length = 389
Score = 28.8 bits (65), Expect = 5.6
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 246 TLVVVISKSGGTPET 260
T++V ++SG +PE+
Sbjct: 111 TVLVSFARSGNSPES 125
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 27.5 bits (61), Expect = 6.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 162 ETTLDAVRKFADEVVSGKIKP 182
E T +A++ F D+ V+GKI+P
Sbjct: 100 EITFEAIKAFVDDFVAGKIEP 120
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint
center for structural genomics, J protein structure
initiative; 2.20A {Shewanella oneidensis}
Length = 280
Score = 28.4 bits (64), Expect = 6.6
Identities = 5/17 (29%), Positives = 5/17 (29%)
Query: 453 PGHDWELEPGVTCGDYL 469
P L T YL
Sbjct: 254 PHPSVVLSERYTADSYL 270
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Length = 208
Score = 28.1 bits (63), Expect = 6.6
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 247 LVV-VISKSGGTPETRNGLLEVQKAFREAGLE--------FAKQGVAITQE-NSLLDNTV 296
L+ V S G T + E+Q+ GL F Q A +E + L
Sbjct: 51 LIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVR 110
Query: 297 RIEGWLARFPMFD 309
G+ F +F+
Sbjct: 111 PGGGFEPNFMLFE 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 28.7 bits (63), Expect = 7.5
Identities = 9/107 (8%), Positives = 27/107 (25%), Gaps = 22/107 (20%)
Query: 75 KDPRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIAN 134
+ +W +++ + + E E+ + A KA L
Sbjct: 381 EKTSRMWDSMIEYEFMVGSM-------------ELFRELVDQKMDAIKADAILPPLPPR- 426
Query: 135 PDEGRMVGHYWLRKPELAPNSFLKSQIETTLDAVRKFADEVVSGKIK 181
+ ++ + LD + ++ ++
Sbjct: 427 --------EHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFME 465
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 28.4 bits (64), Expect = 7.6
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 25/80 (31%)
Query: 74 EKDP--RELWKRYVDWLYQH-----KELGLYLDVSRVGFTDE-----FVEEMEPRFQAAF 121
+ D ++WKR+ ++ + L + + +E
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLN-------IKYDVYSGESQVSKESML------ 303
Query: 122 KAMEELEKGAIANPDEGRMV 141
KA++ ++ + + D+G ++
Sbjct: 304 KAIDLFKEKGLTHEDKGAVL 323
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi
repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB:
2lah_A
Length = 152
Score = 27.5 bits (61), Expect = 8.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 75 KDPRELWKRYVDWLYQH 91
DP W+RY+ W+ ++
Sbjct: 23 NDPLGEWERYIQWVEEN 39
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 28.3 bits (64), Expect = 8.6
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 245 STLVVVISKSGGTPET 260
+++V++ S+ G T ET
Sbjct: 90 NSVVILASQQGNTAET 105
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta;
tumor suppressor, TPR, apoptosis, cell division, cell
cycle, kinetochore, transferase; 1.80A {Homo sapiens}
PDB: 3si5_A
Length = 164
Score = 27.5 bits (61), Expect = 9.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 76 DPRELWKRYVDWLYQH 91
DP ++W RY+ W Q+
Sbjct: 17 DPLDVWDRYISWTEQN 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,664,355
Number of extensions: 627630
Number of successful extensions: 1749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1652
Number of HSP's successfully gapped: 69
Length of query: 619
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 520
Effective length of database: 3,937,614
Effective search space: 2047559280
Effective search space used: 2047559280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)