RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007074
(619 letters)
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 267 bits (682), Expect = 3e-82
Identities = 142/550 (25%), Positives = 218/550 (39%), Gaps = 63/550 (11%)
Query: 35 PTRFSKTPSLVQTQSVAREISADLSNTNDVVPKKAKNGLEKDPRELWKRYVDWLYQHKEL 94
+ P+ + QS+ + + EKD + + ++ +
Sbjct: 4 DSSLLNLPAWKRLQSLYEKYG----------NDSILSHFEKDHQRFQRYSIEIDLHSDDN 53
Query: 95 GLYLDVSRVGFTDEFVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHYWLRKPELA 152
L+LD S+ DE + + + + + G N E R V H LR
Sbjct: 54 FLFLDYSKSHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNR 113
Query: 153 PNSF----LKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFV 208
P + S + L ++ F + V SG+ K + +I+++GIGGS LGP V
Sbjct: 114 PIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQT--GKSIYNIVNIGIGGSDLGPVMV 171
Query: 209 AEALAPD-NPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEV 267
EAL P L F+ N D + + Q+ L T+ ++ SK+ T ET +
Sbjct: 172 TEALKPFSKRDLHCFFVSNVDGTHMAEVLKQV--NLEETIFIIASKTFTTQETLTNAMSA 229
Query: 268 QKAFREAGLE--------FAKQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMS 319
+ A E AK VA++ + + F +DWVGGR S S
Sbjct: 230 RNALMSYLKENGISTDGAVAKHFVALSTNTEKVRE--FGIDTVNMFAFWDWVGGRYSVWS 287
Query: 320 AVGLLPAALQGI-DVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVV 378
A+GL G + E L GA +MD +T N +LAL W ++ GS+ V
Sbjct: 288 AIGLSVMLSIGYDNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAV 347
Query: 379 LPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQG--LTVYGNKGSTDQHAYIQQLREG 436
LPY L YLQQL MES GK V V+G G+ QHA+ Q + +G
Sbjct: 348 LPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQG 407
Query: 437 VHNFFATFIEVLRDRPPGHD--------------------------WELEPGVTCGDYLF 470
FI ++ + D EL GD +
Sbjct: 408 TKIIPCDFIGCVQTQNRVGDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIE 467
Query: 471 GMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEA 530
M+ + R S ++ V +TPR++GA++A+YE V + ++ IN+Y Q GVE
Sbjct: 468 NMI---PHKTFTGSRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVEL 524
Query: 531 GKKAAGEVLA 540
GK A +L
Sbjct: 525 GKVLAKSILP 534
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 255 bits (651), Expect = 8e-78
Identities = 139/543 (25%), Positives = 226/543 (41%), Gaps = 61/543 (11%)
Query: 39 SKTPSLVQTQSVAREISADLSNTNDVVPKKAKNGLEKDPRELWKRYVDWLYQHKELGLYL 98
++ P + Q RE ++L+ + + + + H + +
Sbjct: 4 TRDPQFQKLQQWYREHRSELN---------LRRLFDANKDRFNHFSLTLNTNHG--HILV 52
Query: 99 DVSRVGFTDEFVEEMEPRFQAA--FKAMEELEKGAIANPDEGRMVGHYWLRKPELAP--- 153
D S+ T++ + + ++ A E + G N EGR V H LR P
Sbjct: 53 DYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILV 112
Query: 154 -NSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEAL 212
+ ++ LD ++ F V SG K T ++++GIGGS LGP V EAL
Sbjct: 113 DGKDVMPEVNKVLDKMKSFCQRVRSGDWKGY--TGKTITDVINIGIGGSDLGPLMVTEAL 170
Query: 213 APDNPP-LKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAF 271
P + ++ ++ N D I +AQL PE S+L ++ SK+ T ET ++ F
Sbjct: 171 KPYSSGGPRVWYVSNIDGTHIAKTLAQLNPE--SSLFIIASKTFTTQETITNAETAKEWF 228
Query: 272 REAGLEFAKQGVAITQENSLLDNTVRIEGW-LARFPMFDWVGGRTSEMSAVGLLPAALQG 330
+A + + ++ F +DWVGGR S SA+GL A G
Sbjct: 229 LQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVG 288
Query: 331 IDV-REMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFS 389
D ++L+GA MD+ RTT L N LLAL W + G + +LPY L F+
Sbjct: 289 FDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFA 348
Query: 390 RYLQQLVMESLGKEFDLDGNRVNQ--GLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEV 447
Y QQ MES GK G RV+ G V+G G+ QHA+ Q + +G F+
Sbjct: 349 AYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIP 408
Query: 448 LRDRPPGHDWELEPGVTCGDYLFGMLQGTRS----------------------------- 478
++ + G+ L L T +
Sbjct: 409 VQT-----QHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLP 463
Query: 479 -ALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGE 537
++ +R + ++ ++TP +GALVA+YE + + + +IN++ Q GVE GK+ A +
Sbjct: 464 HKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKK 523
Query: 538 VLA 540
+
Sbjct: 524 IEP 526
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 206 bits (524), Expect = 1e-60
Identities = 102/465 (21%), Positives = 175/465 (37%), Gaps = 57/465 (12%)
Query: 95 GLYLDVSRV--GFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRKPELA 152
+ D S + ++ + +AA L + D +G W+ P
Sbjct: 1 AISFDYSNALPFMQENELDYLSEFVKAAHHM---LHERKGPGSD---FLG--WVDWPIRY 52
Query: 153 PNSFLKSQIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEAL 212
+ +++ A+ + + +++ +GIGGS LG + EAL
Sbjct: 53 DKN--------EFSRIKQAAERIRNH-----------SDALVVIGIGGSYLGARAAIEAL 93
Query: 213 APD-----NPPLKIRFI-DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLE 266
+ N +I F N I H + E + VISKSG T E
Sbjct: 94 SHTFHNQMNDTTQIYFAGQNISSTYISHLLDV--LEGKDLSINVISKSGTTTEPAIAFRI 151
Query: 267 VQKAFREAG-LEFAKQGVAITQENS-LLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLL 324
+ + E A++ + +T + + + + F + D +GGR S ++AVGLL
Sbjct: 152 FRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIGGRYSVLTAVGLL 211
Query: 325 PAALQGIDVREMLAGASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDS 384
P A+ G+++ M+ GA+ L N + G +++ Y+ S
Sbjct: 212 PIAVAGLNIDRMMEGAASAYHKYNNPDLLTNES-YQYAAVRNILYRKGKAIELLVNYEPS 270
Query: 385 LLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATF 444
L S + +QL ES GK+ +TD H+ Q ++EG N T
Sbjct: 271 LHYVSEWWKQLFGESEGKDQKGLFP--------ASVDFTTDLHSMGQYVQEGRRNLIETV 322
Query: 445 IEVLRDRPP---------GHDWELEPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEV 495
+ V + + G T + QGT A ++ V + E+
Sbjct: 323 LHVKKPQIELTIQEDPENIDGLNFLAGKTLDEVNKKAFQGTLLAHVDGGVPNLIVELDEM 382
Query: 496 TPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLA 540
+ G +V +E+A GI L+ +N + QPGVEA KK +L
Sbjct: 383 NEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAYKKNMFALLG 427
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 47.2 bits (111), Expect = 2e-06
Identities = 45/374 (12%), Positives = 86/374 (22%), Gaps = 88/374 (23%)
Query: 160 QIETTLDAVRKFADEVVSGKIKPPSSPEGRFTSILSVGIGGSALGPQFVAEALAPDNPPL 219
I +D + E +I+ + G+GGS + + + N
Sbjct: 13 YILRRVDFPTSYVVEGEVVRIEA-------MPRLYISGMGGSGVVADLIRDFSLTWNWE- 64
Query: 220 KIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLEFA 279
+ I D L++ +S SG T ET E
Sbjct: 65 -VEVIAVKDYFLKA----------RDGLLIAVSYSGNTIETLY--------TVEYAKRRR 105
Query: 280 KQGVAITQENSLLDNTVRIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDVREMLAG 339
VAIT L V + + V + + + E L
Sbjct: 106 IPAVAITTGGRLAQMGVPTVIVPKASAPRAALPQLLTAALHV-VAKVYGIDVKIPEGLEP 164
Query: 340 ASLMDEANRTTVLRNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMES 399
+ + P + A R + +
Sbjct: 165 PNEALIHKLVEEFQKRPTIIAAESMRGV--------------------AYRVKNEFNENA 204
Query: 400 LGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWEL 459
+ H +I+ V + I
Sbjct: 205 --------------KIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQE-------- 242
Query: 460 EPGVTCGDYLFGMLQGTRSALYANDRESVTVTVQEVTPRSVGALVALYERAVGIYASLVN 519
++ T + + + E+ P+ V + + A A +
Sbjct: 243 ------------RVKATVEIVGGS------IYAVEMHPKGVLSFLRDVGIASVKLAEIRG 284
Query: 520 INAYHQPGVEAGKK 533
+N P ++A K+
Sbjct: 285 VNPLATPRIDALKR 298
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 32.6 bits (74), Expect = 0.036
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 14/94 (14%)
Query: 89 YQHKELGLYLDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRK 148
+ + +D +F E+ AI + E Y L +
Sbjct: 45 NRGLMNFVSID------ARKFGRHAG-----NLNMKEQFPLFAIHDMTEDLK---YGLPQ 90
Query: 149 PELAPNSFLKSQIETTLDAVRKFADEVVSGKIKP 182
L +I A+ + + G P
Sbjct: 91 LSEEAFDELSDKIVLESKAIESLVKDFLKGDASP 124
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus
[TaxId: 11886]}
Length = 80
Score = 30.2 bits (68), Expect = 0.14
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 77 PRELWKRYVDWLYQHKELGLYLDVSRVGFTDEFVEEM-EPRFQAAFKAMEELEKGAIANP 135
P E + + + L + E +R + + +P Q +A +
Sbjct: 10 PSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAA-----PSTLTT 64
Query: 136 DEGRMVGHYWLRKPELAP 153
G ++ + L + ++AP
Sbjct: 65 -PGEIIKYV-LDRQKIAP 80
>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 133
Score = 27.2 bits (60), Expect = 3.1
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 106 TDEFVEEMEPRFQAAFKAMEELEKGAIANPDE-GRMVGHYWLRKPELAPNSF-------- 156
T E +E+ + + +A + + G G+ L+ + +
Sbjct: 33 TAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQK 92
Query: 157 --LKSQIETTLDAVRKFADEVVSGKIKP 182
+ E T +A++ F D+ V+GKI+P
Sbjct: 93 FPFDQEKEITFEAIKAFVDDFVAGKIEP 120
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 28.0 bits (61), Expect = 3.4
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 404 FDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFAT---FIEVLRDRPPGHDWELE 460
FDLDG +N L + S I++L + FA+ + L
Sbjct: 7 FDLDGTLLNDNLEI-----SEKDRRNIEKLSRKCYVVFASGRMLVSTLNVEKKYFKRTFP 61
Query: 461 PGVTCGDYLFGM 472
G ++
Sbjct: 62 TIAYNGAIVYLP 73
>d2hqsa2 c.51.2.1 (A:29-162) TolB, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 134
Score = 25.7 bits (56), Expect = 9.5
Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 38 FSKTPSLVQTQSVAREISADLSNTNDVVPKKAKNGLEKDPRELWKRYVDWLYQHKELGLY 97
F + + ++ADL N+ P ++ + W + +
Sbjct: 15 FQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVV 74
Query: 98 LDVSRVGFTDEFVEEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHY 144
V+ + + + N R GH
Sbjct: 75 GQVTPNPD-GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHT 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,287,257
Number of extensions: 110147
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 10
Length of query: 619
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 528
Effective length of database: 1,158,166
Effective search space: 611511648
Effective search space used: 611511648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)