BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007075
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 185 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 243
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 244 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 303
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 304 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 358
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 359 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 418
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 419 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 479 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 533
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 185 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 243
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 244 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 303
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 304 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 358
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 359 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 418
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 419 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 479 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 533
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 158/376 (42%), Gaps = 45/376 (11%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
NL E + A+ Y A P A A +NL + + + L +A+ Y+ A+ I
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 63 PNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDA 122
P F+ + +N+G NP +A+A++NL +++D+G+I AI +
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133
Query: 123 YEQCLKIDPDSRNA--------------------------------GQNRLLAMNY---- 146
Y LK+ PD +A +NRL +++
Sbjct: 134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSM 193
Query: 147 ---INEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVS 201
++ G + E H + + + + Y + K + L +GYVS D+ H S
Sbjct: 194 LYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTS 253
Query: 202 YFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMV 260
+ +++ H+ + FR KVM + + D+ I K A +
Sbjct: 254 HLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRI 310
Query: 261 REDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPET 320
+D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD P E
Sbjct: 311 HQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEV 370
Query: 321 KQKHVEELIRLPECFL 336
+++ E+L +P F
Sbjct: 371 AEQYSEKLAYMPHTFF 386
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 358 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 417
I + +FN L KI P LQ+WA IL VPNS L + P + ++ + +GL
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYA---QNMGLPQN 580
Query: 418 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 477
R+ P + +H++ L D+ LDT G TT + L+ G P VTM G A V
Sbjct: 581 RIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639
Query: 478 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537
S LT +G LIAKN EY +A++L +D+ L +R + SP+ + + + + LE
Sbjct: 640 SQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELE 699
Query: 538 STYRNMWHRYCKGDVP 553
Y MW Y G+ P
Sbjct: 700 RLYLQMWEHYAAGNKP 715
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 29 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 88
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 89 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139
+PT+A+AY+N+G ++ + A+ Y + ++I+P +A N
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 69/132 (52%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ AL +
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 62 KPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID 121
P +++ NLG Y QG +P AEA+ NLG Y G AI+
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 122 AYEQCLKIDPDS 133
Y++ L++DP S
Sbjct: 125 YYQKALELDPRS 136
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 91
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 92 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 151
+P AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 152 DDKLFEAHR 160
D+ E ++
Sbjct: 119 YDEAIEYYQ 127
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 56/106 (52%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ AL +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 62 KPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 107
PN +++ NLG Y QG +P AEA NLG
Sbjct: 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 91
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 92 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139
+P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ AL +
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 62 KPNFSQSLNNLGVVYTVQG 80
PN +++ NLG QG
Sbjct: 107 DPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 54/106 (50%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ AL +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 62 KPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 107
PN +++ NLG Y QG P AEA NLG
Sbjct: 73 YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 91
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 92 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139
P AEA+ NLG Y G AI+ Y++ L++ P++ A QN
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQN 116
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ AL +
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 62 KPNFSQSLNNLGVVYTVQG 80
PN +++ NLG QG
Sbjct: 107 YPNNAEAKQNLGNAKQKQG 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
NL Y E D+AI Y A PH +A NL K++ ++ +A +CY AL +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 63 PNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDA 122
P + SLNNL + QG P +A A++NL + + G + A+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 123 YEQCLKIDPDSRNAGQN 139
Y++ ++I P +A N
Sbjct: 362 YKEAIRISPTFADAYSN 378
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
NLG + + +AI +E A +P+ +A NLG + K+ D+AV Y ALS+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 63 PNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDA 122
PN + NL VY QG P + +AY NL ++ GS++ A D
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 123 YEQCLKIDP 131
Y L++ P
Sbjct: 294 YNTALRLCP 302
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 65
VA G+M + A+ Y A +NP ++LG + K L++A CY A+ +PNF
Sbjct: 112 VAAGDM---EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
Query: 66 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 125
+ + +NLG V+ QG +P + +AY NLG + ++A A+ AY +
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 126 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160
L + P+ N LA Y +G D + +R
Sbjct: 229 ALSLSPNHAVVHGN--LACVYYEQGLIDLAIDTYR 261
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 34/158 (21%)
Query: 13 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 72
+ D + F LA NP AEA +NLG +YK+R L +A+E Y+ AL +KP+F NL
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 73 GVVYTVQGXXXXXXXXXXXXXXXN----------------------------------PT 98
G N P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 99 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136
+A A++NLG ++ G I LAI +E+ + +DP+ +A
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 21 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80
Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 81 XXXXXXXXXXXXXXXNPTYAEAYNNLG 107
+PT+A+AY+N+G
Sbjct: 354 KLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
+LG + + + A Y A P+ A A +NLG ++ + + A+ ++ A+++
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 63 PNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDA 122
PNF + NLG V +P +A + NL +Y + G I LAID
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 123 YEQCLKIDP 131
Y + +++ P
Sbjct: 260 YRRAIELQP 268
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
NL E + A+ Y A P A A +NL + + + L +A+ Y+ A+ I
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 63 PNFSQSLNNLG 73
P F+ + +N+G
Sbjct: 370 PTFADAYSNMG 380
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 53/108 (49%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 91
AEA NLG Y + + KA+E YQ AL + PN + + NLG Y QG
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 92 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139
+P A+A+ G Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 50/105 (47%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 62
NLG AY + + AI +Y+ A +P+ A A NLG Y + + KA+E YQ AL +
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Query: 63 PNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 107
PN +++ G Y QG +P A+A NLG
Sbjct: 74 PNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + + AI +Y+ A +P+ A+A G Y + + KA+E YQ AL +
Sbjct: 47 YNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Query: 62 KPNFSQSLNNLGVVYTVQG 80
PN +++ NLG QG
Sbjct: 107 DPNNAKAKQNLGNAKQKQG 125
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 64 NFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAY 123
N +++ NLG Y QG +P A A+ NLG Y G AI+ Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 124 EQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160
++ L++DP++ A R A Y +G K E ++
Sbjct: 67 QKALELDPNNAKAWYRRGNA--YYKQGDYQKAIEDYQ 101
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ AL +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 62 KPNFSQSLNNLGVVYTVQG 80
PN +++ NLG QG
Sbjct: 73 DPNNAEAKQNLGNAKQKQG 91
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 38/76 (50%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 91
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 92 XXXXNPTYAEAYNNLG 107
+P AEA NLG
Sbjct: 69 ALELDPNNAEAKQNLG 84
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ AL +
Sbjct: 7 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66
Query: 62 KP 63
P
Sbjct: 67 DP 68
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 100 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159
AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G D+ E +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYY 60
Query: 160 R 160
+
Sbjct: 61 Q 61
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 31/262 (11%)
Query: 288 APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV 347
AP+Q +G+P TT I+Y I + D +++ E L+RLP+ L Y PS A
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVED--DYVGSEECFSETLLRLPKDALPYVPSALAPEK 430
Query: 348 CPTPALTN-GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVR 402
N + G + K+ P L+ I R VK + +
Sbjct: 431 VDYLLRENPEVVNIGIASTTMKLNPYFLEALKAI-----RDRAKVKVHFHFALGQSNGIT 485
Query: 403 H----RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY 458
H RF+ + LG + P H +++ D+ ++ FP+ T + +
Sbjct: 486 HPYVERFIKSY--LGDSATAHPHSPY----HQYLRILHNCDMMVNPFPFGNTNGIIDMVT 539
Query: 459 MGVPCVTMAGS-VHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLASDVTALANLRM- 515
+G+ V G+ VH H + L ++GL + LIA DEYV+ A++LA + LR
Sbjct: 540 LGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 516 -----SLRDLMSKSPVCDGQNF 532
L L + P GQ F
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVF 620
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 14 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 73
FD AI Y+ +P+ E LG Y D + A+E + + + +++ LG
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 74 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 133
+ N YA+AY LG++Y G AI+AYE+ + I P
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 134 RNAGQNRLLAMNYINEGHDDK 154
A Q+ + + Y +G D+
Sbjct: 141 IRAYQS--IGLAYEGKGLRDE 159
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 61
Y LG A + + AI + A N A+A LG++Y DKA+E Y+ +SI
Sbjct: 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136
Query: 62 KPNFSQSLNNLGVVYTVQG 80
KP F ++ ++G+ Y +G
Sbjct: 137 KPGFIRAYQSIGLAYEGKG 155
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
LGV + +F+ AI + A P N LG + D ++AVE Y AL I+P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 64 NFSQSLNNLGV 74
F +S NLG+
Sbjct: 279 GFIRSRYNLGI 289
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 16 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 75
+ I+F E A +P AEA LG+ + +N A+ Q L ++PN ++L L V
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
Query: 76 YT 77
YT
Sbjct: 143 YT 144
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P AEA+ LG+ + + AI A ++CL++ P++ A LA++Y N H
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM--ALAVSYTNTSHQQDA 152
Query: 156 FEAHRDWGKR 165
EA ++W K+
Sbjct: 153 CEALKNWIKQ 162
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 39/101 (38%)
Query: 38 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNP 97
LGV++ ++A++ + AL+++P N LG P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 98 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138
+ + NLG+ + G+ A+ + L + SRN Q
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXN 96
LGV++ DKAV+C+ ALS++PN N LG
Sbjct: 159 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 218
Query: 97 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135
P Y + NLG+ + G+ A++ + + L + SR
Sbjct: 219 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 257
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 31 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 88
Query: 156 FEAHRDW 162
E RDW
Sbjct: 89 CEILRDW 95
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXN 96
LGV++ DKAV+C+ ALS++PN N LG
Sbjct: 182 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 241
Query: 97 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135
P Y + NLG+ + G+ A++ + + L + SR
Sbjct: 242 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 280
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 156 FEAHRDW 162
E RDW
Sbjct: 112 CEILRDW 118
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 38 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNP 97
LGV++ DKAV+C+ ALS++PN N LG P
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 98 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134
Y + NLG+ + G+ A++ + + L + SR
Sbjct: 243 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 156 FEAHRDW 162
E RDW
Sbjct: 112 CETLRDW 118
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 38 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNP 97
LGV++ DKAV+C+ ALS++PN N LG P
Sbjct: 174 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 233
Query: 98 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134
Y + NLG+ + G+ A++ + + L + SR
Sbjct: 234 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 270
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 45 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 102
Query: 156 FEAHRDW 162
E RDW
Sbjct: 103 CEILRDW 109
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 38 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNP 97
LGV++ DKAV+C+ ALS++PN N LG P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 98 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134
Y + NLG+ + G+ A++ + + L + SR
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 151
Query: 156 FEAHRDW 162
E RDW
Sbjct: 152 CEILRDW 158
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 45 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN 104
R KA++ Y ALSI P L+N Y+ G +P Y++A++
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 105 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160
LG+ D A +AYE+ ++ + + + R L E K+ EA+R
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL------ETTKRKIEEANR 133
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 65 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 124
+ LG+ Y NP LGV ++ G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFK 134
Query: 125 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 155
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
LG+ Y ++ K+D+A+ NP LGV K+ D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRP 141
Query: 64 N 64
N
Sbjct: 142 N 142
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 24 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 83
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 84 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 119
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 58 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 117
AL + PN +Q +LGV+Y + P A+ +N LG +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 118 LAIDAYEQCLKIDP 131
A+DAY + L I+P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 24 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 83
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 84 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 119
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 58 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 117
AL + PN +Q +LGV+Y + P A+ +N LG +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 118 LAIDAYEQCLKIDP 131
A+DAY + L I+P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
G+++ + ++ A+V E + + E +LG+ Y +D+ E + +++ P+
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 65 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 124
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 125 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 155
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAYSYEQMGSHEEAL 164
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
LG+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 64 N 64
N
Sbjct: 142 N 142
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 66 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 125
+Q L GV+Y G P E +N LG+ AG+ A +A++
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 126 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155
L++DP A NR +A+ Y G DKL
Sbjct: 103 VLELDPTYNYAHLNRGIALYY---GGRDKL 129
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 39 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPT 98
GV+Y A + AL+I+P+ + N LG+ T G +PT
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 99 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 158
Y A+ N G+ G LA D + DP+ LA ++E ++ +
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Query: 159 H------RDWGKRFMRLY 170
H WG + Y
Sbjct: 170 HFEKSDKEQWGWNIVEFY 187
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 60
+Y GV Y + +A + A P E N LG+ N D A E + L
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 61 IKPNFSQSLNNLGVV 75
+ P ++ + N G+
Sbjct: 106 LDPTYNYAHLNRGIA 120
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 65 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 124
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 125 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 155
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
LG+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 64 N 64
N
Sbjct: 142 N 142
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 65 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 124
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 125 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 155
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
LG+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 64 N 64
N
Sbjct: 142 N 142
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 46 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNN 105
+N + AV Y A+ + P + N Y+ G +P Y++AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85
Query: 106 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 143
+G+ A+ Y++ L++DPD+ N +A
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 14 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 73
F+ A+ FY A NP A N Y N AV+ + A+ I P +S++ +G
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 74 VVYT 77
+ +
Sbjct: 88 LALS 91
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLDKAVEC 54
NL V YG+ K+ A + A F+P A+ NNL ++ +++ ++
Sbjct: 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149
Query: 55 YQMALSI--------KPNFSQSLNNLGVVYTVQG 80
Y+ AL I PN +++ NNL Y QG
Sbjct: 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 79
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ 140
Query: 80 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 60
+ N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E AL
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 61 IKPNFSQSL 69
IKP+ S++L
Sbjct: 84 IKPDHSKAL 92
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82
C-Terminal Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1
C-Terminal Fragment
Length = 537
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 60
+ N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E AL
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 61 IKPNFSQSL 69
IKP+ S++L
Sbjct: 88 IKPDHSKAL 96
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 8 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YXEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 8 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 8 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 3 NLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLDKAVEC 54
NL V YG+ K+ A + A F+P A+ +NL ++ +++ ++
Sbjct: 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYY 149
Query: 55 YQMALSI--------KPNFSQSLNNLGVVYTVQG 80
Y+ AL I PN +++ NNL Y QG
Sbjct: 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 79
+P A NNL V+Y R +A + AL I+ P+ ++ L+NL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQ 140
Query: 80 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 79
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166
Query: 80 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127
G +P A+ NNL Y G A Y++ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 80
A+A NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 85 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 139
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 80
A+A NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 32 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 80
A+A NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64
+P A+A N GV Y ++N +KA+E A+ I+P+
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132
E Y GVL DAG+ + +ID +E+ +++DP+
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE 38
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 155 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 207
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 96 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 138
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 155 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 207
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 108 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 150
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 155 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPL 208
F DWG +S + +W DPE+ G++ D T V F++A L
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEV--FVQADL 151
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 155 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 207
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 155 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 207
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 148
EAY +G YR G A++ Y+ ++++PDS A Q R + M+ +N
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILN 82
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv
Pilus Biogenesis Factor
Length = 225
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 49 DKAVECYQMALSIKPNFSQSLNNLG 73
DKA E ++ ALSIKP+ ++ NN G
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,300,567
Number of Sequences: 62578
Number of extensions: 747390
Number of successful extensions: 1952
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1767
Number of HSP's gapped (non-prelim): 150
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)