Query 007075
Match_columns 619
No_of_seqs 601 out of 4296
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 18:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 7E-116 2E-120 897.4 44.2 560 1-567 357-965 (966)
2 COG3914 Spy Predicted O-linked 100.0 4.3E-93 9.4E-98 733.7 49.2 525 15-548 48-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 1.3E-85 2.7E-90 688.5 29.4 351 186-544 1-468 (468)
4 PRK15179 Vi polysaccharide bio 100.0 1.3E-34 2.9E-39 322.6 43.2 511 1-541 89-692 (694)
5 PRK15490 Vi polysaccharide bio 99.9 3.7E-20 8E-25 198.1 31.6 270 254-542 270-575 (578)
6 KOG4626 O-linked N-acetylgluco 99.8 4E-19 8.7E-24 184.8 17.4 155 3-159 291-445 (966)
7 TIGR03088 stp2 sugar transfera 99.8 2.9E-17 6.2E-22 174.8 25.7 333 187-543 3-373 (374)
8 PLN02949 transferase, transfer 99.8 4.3E-17 9.2E-22 176.5 25.7 181 357-546 268-460 (463)
9 cd03796 GT1_PIG-A_like This fa 99.7 1.6E-16 3.4E-21 170.6 23.6 270 254-545 78-370 (398)
10 cd03792 GT1_Trehalose_phosphor 99.7 8.1E-16 1.8E-20 163.6 26.3 336 187-542 1-371 (372)
11 PRK15427 colanic acid biosynth 99.7 1.5E-16 3.4E-21 170.7 20.8 196 325-542 196-405 (406)
12 PLN02871 UDP-sulfoquinovose:DA 99.7 4E-16 8.7E-21 170.8 22.6 344 183-549 56-441 (465)
13 COG3063 PilF Tfp pilus assembl 99.7 1E-15 2.2E-20 143.4 18.9 161 2-164 39-201 (250)
14 cd03820 GT1_amsD_like This fam 99.7 1.2E-15 2.6E-20 158.4 21.6 318 188-537 2-347 (348)
15 TIGR03449 mycothiol_MshA UDP-N 99.7 9.3E-16 2E-20 165.0 20.7 208 325-544 186-403 (405)
16 cd03822 GT1_ecORF704_like This 99.7 1.9E-15 4E-20 159.1 22.1 334 187-541 1-366 (366)
17 cd03801 GT1_YqgM_like This fam 99.7 1.3E-15 2.8E-20 159.0 19.4 273 254-541 75-374 (374)
18 cd03807 GT1_WbnK_like This fam 99.7 6.3E-15 1.4E-19 154.2 24.5 329 188-541 2-365 (365)
19 cd03806 GT1_ALG11_like This fa 99.7 9.9E-16 2.2E-20 165.1 18.8 171 355-534 235-418 (419)
20 TIGR00990 3a0801s09 mitochondr 99.7 2.6E-15 5.6E-20 170.2 22.8 162 1-164 334-495 (615)
21 KOG1126 DNA-binding cell divis 99.7 2.3E-16 4.9E-21 167.3 12.0 162 1-164 424-585 (638)
22 cd03821 GT1_Bme6_like This fam 99.7 6.3E-15 1.4E-19 154.8 23.0 202 323-537 168-374 (375)
23 cd04962 GT1_like_5 This family 99.7 1.9E-15 4E-20 160.3 18.8 271 254-543 74-371 (371)
24 cd05844 GT1_like_7 Glycosyltra 99.7 1.1E-15 2.4E-20 161.7 17.0 259 255-538 73-366 (367)
25 PRK15359 type III secretion sy 99.7 3.2E-15 7E-20 136.3 16.4 127 17-146 12-138 (144)
26 cd03812 GT1_CapH_like This fam 99.7 7.4E-15 1.6E-19 154.7 21.3 314 188-520 2-345 (358)
27 cd03818 GT1_ExpC_like This fam 99.6 3.7E-15 7.9E-20 160.0 18.5 205 323-537 174-395 (396)
28 PRK15484 lipopolysaccharide 1, 99.6 9.1E-15 2E-19 155.8 20.5 242 288-543 122-378 (380)
29 TIGR02521 type_IV_pilW type IV 99.6 2.8E-14 6.1E-19 139.6 22.4 162 1-164 34-197 (234)
30 cd03813 GT1_like_3 This family 99.6 1E-14 2.2E-19 160.1 19.9 175 355-541 291-475 (475)
31 cd04951 GT1_WbdM_like This fam 99.6 7.4E-15 1.6E-19 154.6 18.0 200 325-541 153-359 (360)
32 cd03805 GT1_ALG2_like This fam 99.6 1E-14 2.2E-19 156.0 19.0 174 353-536 207-392 (392)
33 KOG1155 Anaphase-promoting com 99.6 1.5E-14 3.2E-19 147.1 18.5 161 4-166 336-496 (559)
34 PRK09922 UDP-D-galactose:(gluc 99.6 1.5E-14 3.1E-19 153.2 19.5 327 187-545 2-358 (359)
35 TIGR02472 sucr_P_syn_N sucrose 99.6 1.9E-14 4.1E-19 156.4 20.3 205 325-540 208-438 (439)
36 PRK12370 invasion protein regu 99.6 2.2E-14 4.9E-19 160.0 21.2 149 12-162 318-467 (553)
37 cd03799 GT1_amsK_like This is 99.6 5.9E-14 1.3E-18 147.4 23.1 326 188-535 2-354 (355)
38 PLN02846 digalactosyldiacylgly 99.6 4.1E-15 8.8E-20 159.0 12.8 203 311-542 181-391 (462)
39 cd03811 GT1_WabH_like This fam 99.6 5.8E-14 1.3E-18 145.8 21.2 317 188-520 2-346 (353)
40 PRK10307 putative glycosyl tra 99.6 2.6E-14 5.6E-19 154.2 19.1 205 325-545 193-410 (412)
41 TIGR00990 3a0801s09 mitochondr 99.6 4E-14 8.8E-19 160.4 21.3 162 1-162 368-534 (615)
42 PLN02501 digalactosyldiacylgly 99.6 6.7E-15 1.5E-19 159.5 13.3 262 252-539 422-706 (794)
43 KOG1126 DNA-binding cell divis 99.6 4.5E-15 9.8E-20 157.5 11.7 159 2-162 357-549 (638)
44 TIGR02918 accessory Sec system 99.6 3.5E-14 7.7E-19 155.3 19.1 168 357-542 319-499 (500)
45 cd03817 GT1_UGDG_like This fam 99.6 3.3E-14 7.2E-19 149.4 18.2 173 352-542 197-373 (374)
46 PLN02939 transferase, transfer 99.6 4.1E-14 8.8E-19 159.4 19.2 212 324-546 723-970 (977)
47 PRK09782 bacteriophage N4 rece 99.6 9.3E-14 2E-18 161.7 22.9 159 2-163 546-704 (987)
48 cd03795 GT1_like_4 This family 99.6 5.7E-14 1.2E-18 147.7 19.4 254 260-532 79-356 (357)
49 PRK11189 lipoprotein NlpI; Pro 99.6 1.5E-13 3.2E-18 141.2 21.5 128 1-129 67-194 (296)
50 cd03798 GT1_wlbH_like This fam 99.6 1.2E-13 2.5E-18 144.7 20.6 269 254-542 81-376 (377)
51 PRK12370 invasion protein regu 99.6 1.2E-13 2.6E-18 154.2 21.5 149 13-163 276-433 (553)
52 cd03819 GT1_WavL_like This fam 99.6 2.1E-13 4.6E-18 143.4 22.3 313 198-531 10-354 (355)
53 PRK15174 Vi polysaccharide exp 99.6 1.6E-13 3.4E-18 155.8 22.7 161 3-165 217-381 (656)
54 cd04949 GT1_gtfA_like This fam 99.6 6.6E-14 1.4E-18 148.8 18.1 164 356-535 203-371 (372)
55 TIGR02521 type_IV_pilW type IV 99.6 3.9E-13 8.4E-18 131.5 21.8 158 2-161 69-228 (234)
56 PRK10370 formate-dependent nit 99.6 1.1E-13 2.4E-18 133.1 17.1 125 11-135 52-179 (198)
57 TIGR02468 sucrsPsyn_pln sucros 99.6 1.4E-13 3E-18 157.4 20.5 182 354-547 476-675 (1050)
58 TIGR03302 OM_YfiO outer membra 99.6 2.5E-13 5.5E-18 134.8 19.7 164 1-166 36-233 (235)
59 PRK15359 type III secretion sy 99.6 8.2E-14 1.8E-18 127.0 14.6 112 2-113 28-139 (144)
60 cd03808 GT1_cap1E_like This fa 99.6 9.1E-13 2E-17 137.3 24.4 169 354-537 185-358 (359)
61 cd03802 GT1_AviGT4_like This f 99.5 4.1E-13 8.8E-18 140.1 21.5 311 187-541 2-335 (335)
62 KOG1111 N-acetylglucosaminyltr 99.5 9.7E-14 2.1E-18 137.5 15.3 223 303-560 143-381 (426)
63 TIGR03087 stp1 sugar transfera 99.5 1.3E-13 2.9E-18 147.9 17.9 191 325-541 195-395 (397)
64 cd03814 GT1_like_2 This family 99.5 1.4E-13 3E-18 144.5 17.6 165 355-541 195-364 (364)
65 cd03825 GT1_wcfI_like This fam 99.5 2.6E-13 5.6E-18 143.1 19.7 166 358-543 194-365 (365)
66 cd03800 GT1_Sucrose_synthase T 99.5 6.1E-13 1.3E-17 142.2 22.3 175 353-537 216-397 (398)
67 KOG1125 TPR repeat-containing 99.5 1.1E-13 2.5E-18 144.8 15.8 159 2-162 289-524 (579)
68 PRK09782 bacteriophage N4 rece 99.5 2.7E-13 5.9E-18 157.8 20.7 133 5-138 583-715 (987)
69 TIGR02149 glgA_Coryne glycogen 99.5 3.5E-13 7.7E-18 143.9 19.8 206 325-543 168-387 (388)
70 cd03823 GT1_ExpE7_like This fa 99.5 1.9E-13 4.1E-18 143.1 17.3 259 254-541 86-358 (359)
71 PLN02316 synthase/transferase 99.5 2.2E-13 4.8E-18 156.2 18.1 182 351-544 833-1035(1036)
72 KOG1155 Anaphase-promoting com 99.5 7.2E-13 1.6E-17 135.0 19.2 156 2-157 368-528 (559)
73 cd03809 GT1_mtfB_like This fam 99.5 5E-13 1.1E-17 140.5 18.3 170 354-537 192-364 (365)
74 cd04955 GT1_like_6 This family 99.5 1.1E-12 2.5E-17 138.2 20.7 163 360-541 196-363 (363)
75 PLN00142 sucrose synthase 99.5 6.5E-13 1.4E-17 149.1 19.4 178 355-541 571-769 (815)
76 TIGR02470 sucr_synth sucrose s 99.5 1.2E-12 2.6E-17 146.9 20.9 179 354-541 547-746 (784)
77 PRK11189 lipoprotein NlpI; Pro 99.5 1.9E-12 4.2E-17 132.9 20.7 148 11-161 39-190 (296)
78 TIGR02552 LcrH_SycD type III s 99.5 1.1E-12 2.4E-17 118.2 16.5 119 19-137 4-122 (135)
79 cd04946 GT1_AmsK_like This fam 99.5 4.8E-13 1E-17 143.9 16.4 168 355-536 228-405 (407)
80 PRK15174 Vi polysaccharide exp 99.5 3.5E-12 7.6E-17 144.9 23.2 103 2-104 80-182 (656)
81 PRK11788 tetratricopeptide rep 99.5 2.8E-12 6.1E-17 137.1 21.1 159 2-161 111-274 (389)
82 PRK11447 cellulose synthase su 99.5 2.4E-12 5.2E-17 155.7 22.5 160 2-163 307-522 (1157)
83 cd03816 GT1_ALG1_like This fam 99.5 1.2E-12 2.7E-17 141.1 17.7 156 354-521 229-399 (415)
84 PF00534 Glycos_transf_1: Glyc 99.5 7.1E-13 1.5E-17 124.7 13.9 156 353-520 11-172 (172)
85 TIGR02917 PEP_TPR_lipo putativ 99.5 3.7E-12 8.1E-17 149.9 21.9 155 3-160 741-895 (899)
86 PRK11447 cellulose synthase su 99.4 5E-12 1.1E-16 152.9 23.0 156 3-160 356-553 (1157)
87 PRK11788 tetratricopeptide rep 99.4 7.2E-12 1.6E-16 134.0 21.8 160 2-164 145-310 (389)
88 PRK00654 glgA glycogen synthas 99.4 2.7E-12 5.8E-17 140.6 18.6 175 352-545 276-465 (466)
89 PRK14099 glycogen synthase; Pr 99.4 3.1E-12 6.7E-17 140.1 19.0 174 356-545 294-481 (485)
90 PRK05749 3-deoxy-D-manno-octul 99.4 7.5E-12 1.6E-16 135.6 21.6 170 358-543 234-420 (425)
91 PRK14098 glycogen synthase; Pr 99.4 3E-12 6.4E-17 140.3 18.3 172 355-544 305-487 (489)
92 KOG0553 TPR repeat-containing 99.4 1.5E-12 3.2E-17 127.2 13.9 116 34-149 83-198 (304)
93 COG3063 PilF Tfp pilus assembl 99.4 5.8E-12 1.3E-16 118.4 17.3 165 2-172 73-239 (250)
94 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.3E-17 132.8 14.6 160 4-165 116-277 (280)
95 KOG0553 TPR repeat-containing 99.4 1.5E-12 3.2E-17 127.1 12.7 115 3-117 86-200 (304)
96 KOG0547 Translocase of outer m 99.4 2.9E-12 6.4E-17 131.4 15.0 131 2-132 364-494 (606)
97 PRK15179 Vi polysaccharide bio 99.4 1.4E-11 3E-16 138.5 21.4 147 16-164 70-216 (694)
98 PRK15363 pathogenicity island 99.4 1.1E-11 2.4E-16 111.5 15.8 108 25-132 27-135 (157)
99 TIGR02095 glgA glycogen/starch 99.4 6.6E-12 1.4E-16 138.0 17.6 170 356-543 290-473 (473)
100 PHA01630 putative group 1 glyc 99.4 1.5E-11 3.2E-16 128.0 17.3 169 356-542 141-330 (331)
101 PRK10370 formate-dependent nit 99.4 3.8E-11 8.3E-16 115.5 18.7 148 5-165 23-173 (198)
102 PLN02605 monogalactosyldiacylg 99.4 3.3E-11 7.2E-16 128.6 20.1 265 254-538 90-377 (382)
103 TIGR02917 PEP_TPR_lipo putativ 99.4 4.1E-11 8.9E-16 141.1 22.8 158 3-162 470-627 (899)
104 PLN02789 farnesyltranstransfer 99.4 5.9E-11 1.3E-15 122.1 20.9 139 7-145 46-187 (320)
105 COG5010 TadD Flp pilus assembl 99.3 5E-11 1.1E-15 114.5 18.0 152 3-156 71-222 (257)
106 cd03794 GT1_wbuB_like This fam 99.3 2.7E-11 5.8E-16 127.8 18.1 197 324-536 186-393 (394)
107 KOG0547 Translocase of outer m 99.3 1.4E-11 3.1E-16 126.3 15.0 159 3-163 331-489 (606)
108 PRK13609 diacylglycerol glucos 99.3 4.4E-11 9.5E-16 127.6 19.6 268 254-542 94-371 (380)
109 PRK15363 pathogenicity island 99.3 2.6E-11 5.5E-16 109.2 14.2 98 1-98 38-135 (157)
110 cd03804 GT1_wbaZ_like This fam 99.3 3.4E-11 7.3E-16 126.9 17.4 149 360-536 198-350 (351)
111 PRK10049 pgaA outer membrane p 99.3 9.1E-11 2E-15 136.0 22.3 154 5-161 22-175 (765)
112 PRK10049 pgaA outer membrane p 99.3 7.4E-11 1.6E-15 136.8 21.4 161 4-166 278-457 (765)
113 PHA01633 putative glycosyl tra 99.3 3.6E-11 7.8E-16 124.0 16.7 162 356-537 147-334 (335)
114 KOG1173 Anaphase-promoting com 99.3 7.5E-11 1.6E-15 123.3 18.1 159 1-161 315-514 (611)
115 PLN02789 farnesyltranstransfer 99.3 1.2E-10 2.5E-15 119.9 19.5 142 1-142 74-225 (320)
116 cd03791 GT1_Glycogen_synthase_ 99.3 4.4E-11 9.6E-16 131.6 16.5 169 355-542 294-476 (476)
117 PRK13608 diacylglycerol glucos 99.3 1.3E-10 2.8E-15 124.3 19.5 266 254-545 94-374 (391)
118 KOG1173 Anaphase-promoting com 99.3 4.9E-11 1.1E-15 124.7 15.5 139 2-140 384-529 (611)
119 KOG1125 TPR repeat-containing 99.3 2.9E-11 6.4E-16 126.9 13.3 119 14-132 410-530 (579)
120 PLN03088 SGT1, suppressor of 99.3 7E-11 1.5E-15 124.2 16.2 105 36-140 6-110 (356)
121 PF13429 TPR_15: Tetratricopep 99.3 1E-11 2.2E-16 126.7 9.6 129 1-129 149-277 (280)
122 PRK10125 putative glycosyl tra 99.3 5.3E-11 1.1E-15 127.6 15.5 156 355-543 239-405 (405)
123 KOG1129 TPR repeat-containing 99.3 2.6E-11 5.6E-16 118.7 10.6 156 3-160 295-453 (478)
124 TIGR03302 OM_YfiO outer membra 99.3 1.5E-10 3.2E-15 114.9 16.0 130 2-131 74-234 (235)
125 COG2956 Predicted N-acetylgluc 99.2 4.2E-10 9E-15 110.5 17.4 163 2-165 111-278 (389)
126 KOG2076 RNA polymerase III tra 99.2 7.4E-10 1.6E-14 121.6 21.1 130 2-131 143-272 (895)
127 KOG1840 Kinesin light chain [C 99.2 2.9E-10 6.2E-15 122.3 17.4 167 2-168 203-399 (508)
128 PRK00726 murG undecaprenyldiph 99.2 2.1E-10 4.5E-15 121.3 16.1 260 255-541 82-356 (357)
129 cd03788 GT1_TPS Trehalose-6-Ph 99.2 1.7E-10 3.8E-15 125.6 15.8 173 354-539 261-458 (460)
130 COG4783 Putative Zn-dependent 99.2 1E-09 2.2E-14 113.8 20.2 151 2-152 310-460 (484)
131 PLN03088 SGT1, suppressor of 99.2 3.2E-10 6.8E-15 119.3 17.0 112 2-113 6-117 (356)
132 COG5010 TadD Flp pilus assembl 99.2 6.1E-10 1.3E-14 107.1 16.8 147 12-161 47-193 (257)
133 cd05804 StaR_like StaR_like; a 99.2 7.2E-10 1.6E-14 117.0 19.3 159 3-162 48-212 (355)
134 TIGR02552 LcrH_SycD type III s 99.2 2.9E-10 6.3E-15 102.3 14.0 102 2-103 21-122 (135)
135 KOG3060 Uncharacterized conser 99.2 8.1E-10 1.8E-14 105.2 17.2 131 5-135 59-189 (289)
136 KOG2003 TPR repeat-containing 99.2 3.7E-10 8.1E-15 114.7 15.8 161 3-165 495-689 (840)
137 TIGR00236 wecB UDP-N-acetylglu 99.2 7.9E-10 1.7E-14 117.3 19.4 245 254-516 76-344 (365)
138 PRK14574 hmsH outer membrane p 99.2 1E-09 2.3E-14 125.7 20.9 161 2-165 38-198 (822)
139 KOG1840 Kinesin light chain [C 99.2 7.7E-10 1.7E-14 119.0 18.4 162 3-166 246-439 (508)
140 PLN02275 transferase, transfer 99.2 2.4E-10 5.2E-15 121.5 14.1 135 356-503 212-370 (371)
141 TIGR02400 trehalose_OtsA alpha 99.2 1.2E-09 2.7E-14 118.2 18.9 171 356-540 258-454 (456)
142 KOG0548 Molecular co-chaperone 99.2 8.8E-10 1.9E-14 115.1 16.5 138 3-140 303-466 (539)
143 cd03785 GT1_MurG MurG is an N- 99.2 5.4E-10 1.2E-14 117.7 15.5 239 255-520 80-338 (350)
144 KOG1129 TPR repeat-containing 99.1 6.7E-10 1.4E-14 109.0 13.3 147 2-149 227-373 (478)
145 KOG2003 TPR repeat-containing 99.1 4.3E-10 9.4E-15 114.2 12.3 156 3-160 459-616 (840)
146 KOG3060 Uncharacterized conser 99.1 9E-09 1.9E-13 98.2 20.0 143 4-146 92-237 (289)
147 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.1E-09 4.4E-14 94.1 14.7 105 32-136 2-112 (119)
148 KOG0624 dsRNA-activated protei 99.1 2.8E-09 6.1E-14 105.2 16.7 159 2-162 42-215 (504)
149 PRK10153 DNA-binding transcrip 99.1 2.4E-09 5.3E-14 117.2 17.5 134 2-136 343-489 (517)
150 COG4235 Cytochrome c biogenesi 99.1 3.2E-09 6.9E-14 104.8 16.0 123 13-135 137-262 (287)
151 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.4E-09 5.1E-14 93.7 13.8 104 1-104 5-114 (119)
152 KOG2076 RNA polymerase III tra 99.1 6.4E-09 1.4E-13 114.4 19.7 95 1-95 176-270 (895)
153 PF13692 Glyco_trans_1_4: Glyc 99.1 1.6E-10 3.4E-15 104.0 6.2 129 357-506 2-135 (135)
154 TIGR01133 murG undecaprenyldip 99.1 1.3E-09 2.8E-14 114.7 13.8 240 254-520 80-335 (348)
155 cd00189 TPR Tetratricopeptide 99.1 1.9E-09 4.1E-14 88.6 12.1 98 34-131 2-99 (100)
156 KOG4162 Predicted calmodulin-b 99.1 2.1E-09 4.6E-14 116.3 15.1 134 2-135 654-789 (799)
157 PRK11906 transcriptional regul 99.1 6.8E-09 1.5E-13 108.3 18.1 148 3-150 260-422 (458)
158 CHL00033 ycf3 photosystem I as 99.1 5.3E-09 1.1E-13 98.1 15.8 124 11-134 12-154 (168)
159 KOG0550 Molecular chaperone (D 99.1 1.4E-09 2.9E-14 110.1 12.0 159 4-164 175-349 (486)
160 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 3.7E-09 8.1E-14 111.9 16.2 283 214-513 26-344 (363)
161 PRK00025 lpxB lipid-A-disaccha 99.0 1.9E-09 4.1E-14 115.0 13.5 138 368-520 202-355 (380)
162 cd00189 TPR Tetratricopeptide 99.0 2.3E-09 5.1E-14 88.0 11.1 98 1-98 3-100 (100)
163 PRK02603 photosystem I assembl 99.0 6.3E-09 1.4E-13 98.0 14.7 106 29-134 32-154 (172)
164 PRK14501 putative bifunctional 99.0 4.8E-09 1E-13 120.8 16.7 180 355-548 263-468 (726)
165 PF13414 TPR_11: TPR repeat; P 99.0 1.3E-09 2.9E-14 85.7 8.5 66 66-131 3-69 (69)
166 cd04950 GT1_like_1 Glycosyltra 99.0 6.8E-09 1.5E-13 110.5 16.4 189 326-542 173-371 (373)
167 PRK02603 photosystem I assembl 99.0 8.3E-09 1.8E-13 97.2 15.1 80 2-81 39-121 (172)
168 PRK14574 hmsH outer membrane p 99.0 1.6E-08 3.5E-13 116.1 20.1 152 4-158 74-225 (822)
169 PF13414 TPR_11: TPR repeat; P 99.0 1.8E-09 4E-14 85.0 8.7 67 31-97 2-69 (69)
170 PRK10747 putative protoheme IX 99.0 2.5E-08 5.5E-13 106.9 20.3 155 5-162 160-387 (398)
171 KOG2002 TPR-containing nuclear 99.0 9.6E-09 2.1E-13 113.7 17.1 156 4-160 205-366 (1018)
172 TIGR00215 lpxB lipid-A-disacch 99.0 3.2E-09 6.9E-14 113.2 12.9 250 254-521 79-366 (385)
173 CHL00033 ycf3 photosystem I as 99.0 9.4E-09 2E-13 96.4 14.5 100 1-100 38-154 (168)
174 COG4783 Putative Zn-dependent 99.0 3.2E-08 6.9E-13 102.8 19.2 133 28-162 302-434 (484)
175 PF09976 TPR_21: Tetratricopep 99.0 2.2E-08 4.8E-13 91.5 16.1 122 5-127 18-145 (145)
176 PLN03063 alpha,alpha-trehalose 99.0 1.2E-08 2.6E-13 117.5 17.5 179 356-547 278-482 (797)
177 KOG0543 FKBP-type peptidyl-pro 99.0 1.1E-08 2.4E-13 104.3 14.9 118 3-139 213-330 (397)
178 KOG0550 Molecular chaperone (D 99.0 4.2E-09 9.2E-14 106.6 11.6 131 2-132 207-353 (486)
179 KOG0548 Molecular co-chaperone 98.9 8.3E-09 1.8E-13 107.9 13.1 124 3-126 363-486 (539)
180 cd05804 StaR_like StaR_like; a 98.9 3.5E-08 7.6E-13 104.1 18.2 160 1-163 9-175 (355)
181 PRK10866 outer membrane biogen 98.9 1.4E-07 3E-12 93.7 21.2 159 2-160 36-236 (243)
182 KOG1174 Anaphase-promoting com 98.9 2.6E-08 5.5E-13 100.8 15.7 164 3-168 237-400 (564)
183 KOG1174 Anaphase-promoting com 98.9 1.8E-08 3.8E-13 102.0 14.3 162 2-165 304-467 (564)
184 KOG2002 TPR-containing nuclear 98.9 4.6E-08 9.9E-13 108.5 18.7 137 3-139 275-419 (1018)
185 KOG1156 N-terminal acetyltrans 98.9 2.4E-08 5.2E-13 106.3 15.2 162 2-165 11-172 (700)
186 TIGR00540 hemY_coli hemY prote 98.9 1.4E-07 3.1E-12 101.6 21.2 89 5-93 125-214 (409)
187 KOG0853 Glycosyltransferase [C 98.9 3E-08 6.4E-13 105.2 15.4 182 351-542 267-467 (495)
188 KOG1128 Uncharacterized conser 98.9 8.1E-09 1.8E-13 111.3 11.1 159 3-164 429-615 (777)
189 PF12895 Apc3: Anaphase-promot 98.9 4.6E-09 9.9E-14 86.3 7.3 79 12-91 3-83 (84)
190 PF13432 TPR_16: Tetratricopep 98.9 7.5E-09 1.6E-13 80.4 8.1 63 3-65 2-64 (65)
191 KOG1387 Glycosyltransferase [C 98.9 1.7E-08 3.8E-13 99.9 12.4 181 355-545 267-461 (465)
192 PF12895 Apc3: Anaphase-promot 98.9 6.4E-09 1.4E-13 85.4 8.0 82 44-126 1-84 (84)
193 COG2956 Predicted N-acetylgluc 98.9 1.6E-07 3.5E-12 92.6 18.5 132 3-134 146-283 (389)
194 PF13525 YfiO: Outer membrane 98.9 1.7E-07 3.6E-12 90.7 18.8 153 1-153 8-195 (203)
195 PRK10747 putative protoheme IX 98.9 1.4E-07 3.1E-12 101.1 19.8 156 5-165 125-323 (398)
196 PF13432 TPR_16: Tetratricopep 98.9 1.3E-08 2.8E-13 79.1 8.4 62 38-99 3-64 (65)
197 PRK14720 transcript cleavage f 98.8 6E-08 1.3E-12 110.3 16.8 125 2-129 35-178 (906)
198 PRK15331 chaperone protein Sic 98.8 6.9E-08 1.5E-12 87.6 13.2 107 28-135 33-139 (165)
199 PRK10803 tol-pal system protei 98.8 1E-07 2.2E-12 95.4 15.5 107 31-137 141-254 (263)
200 cd01635 Glycosyltransferase_GT 98.8 2.1E-07 4.5E-12 90.6 17.4 105 359-469 109-214 (229)
201 KOG1127 TPR repeat-containing 98.8 3.6E-08 7.9E-13 109.1 12.7 152 12-165 472-659 (1238)
202 cd03793 GT1_Glycogen_synthase_ 98.8 5E-08 1.1E-12 105.6 13.7 121 419-545 450-589 (590)
203 PRK10803 tol-pal system protei 98.8 1.3E-07 2.9E-12 94.6 15.7 101 2-102 146-253 (263)
204 COG0438 RfaG Glycosyltransfera 98.8 2E-07 4.4E-12 96.0 17.5 176 358-545 200-379 (381)
205 PRK15331 chaperone protein Sic 98.8 8.8E-08 1.9E-12 86.9 12.6 98 2-100 41-138 (165)
206 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.8E-07 3.8E-12 98.4 16.3 117 6-125 177-293 (395)
207 PF12688 TPR_5: Tetratrico pep 98.8 1.9E-07 4E-12 81.6 13.5 94 34-127 3-102 (120)
208 TIGR00540 hemY_coli hemY prote 98.8 5.9E-07 1.3E-11 96.8 20.5 133 3-135 89-222 (409)
209 KOG1128 Uncharacterized conser 98.8 2.6E-08 5.7E-13 107.4 9.7 127 5-131 492-618 (777)
210 TIGR03713 acc_sec_asp1 accesso 98.7 1.2E-07 2.6E-12 104.2 14.8 169 357-539 321-518 (519)
211 KOG0495 HAT repeat protein [RN 98.7 3.7E-07 8.1E-12 97.3 17.4 129 4-132 657-785 (913)
212 KOG0624 dsRNA-activated protei 98.7 1.1E-06 2.5E-11 87.2 18.8 135 3-137 111-260 (504)
213 KOG0543 FKBP-type peptidyl-pro 98.7 2E-07 4.3E-12 95.3 13.6 97 33-129 258-355 (397)
214 KOG4340 Uncharacterized conser 98.7 3.3E-07 7.2E-12 89.3 14.3 160 9-170 21-212 (459)
215 COG4235 Cytochrome c biogenesi 98.7 3.4E-07 7.3E-12 90.6 14.4 116 47-164 137-255 (287)
216 KOG1130 Predicted G-alpha GTPa 98.7 3.3E-08 7.1E-13 99.9 7.2 160 3-162 100-301 (639)
217 KOG0495 HAT repeat protein [RN 98.7 7.6E-07 1.6E-11 95.0 17.4 155 7-164 627-781 (913)
218 PF12688 TPR_5: Tetratrico pep 98.7 5.1E-07 1.1E-11 78.8 13.3 94 1-94 4-103 (120)
219 PF12569 NARP1: NMDA receptor- 98.7 2.2E-06 4.8E-11 93.6 21.1 91 68-160 196-286 (517)
220 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.3E-07 2.8E-12 98.8 10.9 69 61-129 70-141 (453)
221 PRK14720 transcript cleavage f 98.6 5.5E-07 1.2E-11 102.6 15.3 136 26-166 25-179 (906)
222 KOG4234 TPR repeat-containing 98.6 3.7E-07 7.9E-12 84.2 11.0 105 35-139 98-207 (271)
223 KOG1156 N-terminal acetyltrans 98.6 1.2E-06 2.6E-11 93.7 16.5 159 3-161 46-210 (700)
224 COG4700 Uncharacterized protei 98.6 7.1E-06 1.5E-10 75.1 18.9 160 5-168 63-225 (251)
225 COG4700 Uncharacterized protei 98.6 1.9E-06 4E-11 78.8 15.1 126 2-128 93-221 (251)
226 COG1729 Uncharacterized protei 98.6 1.2E-06 2.6E-11 85.7 14.4 103 35-137 144-252 (262)
227 PF14559 TPR_19: Tetratricopep 98.6 2.5E-07 5.3E-12 72.4 7.5 65 9-73 2-66 (68)
228 PF09976 TPR_21: Tetratricopep 98.6 6E-06 1.3E-10 75.3 17.7 115 44-161 23-143 (145)
229 KOG4162 Predicted calmodulin-b 98.5 1.4E-06 3.1E-11 94.8 15.4 128 33-162 651-780 (799)
230 PF04733 Coatomer_E: Coatomer 98.5 3.6E-07 7.8E-12 93.0 10.3 142 4-152 108-251 (290)
231 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.8E-07 8.3E-12 95.3 10.6 70 27-96 70-142 (453)
232 PF14938 SNAP: Soluble NSF att 98.5 9.3E-07 2E-11 90.2 13.3 160 2-162 39-222 (282)
233 PF13371 TPR_9: Tetratricopept 98.5 5.4E-07 1.2E-11 71.6 8.8 61 75-135 4-64 (73)
234 PF14559 TPR_19: Tetratricopep 98.5 2.8E-07 6.1E-12 72.1 6.9 56 78-133 3-58 (68)
235 KOG4234 TPR repeat-containing 98.5 1.7E-06 3.6E-11 79.9 12.2 99 4-102 101-204 (271)
236 TIGR02398 gluc_glyc_Psyn gluco 98.5 5E-06 1.1E-10 90.1 17.9 172 356-541 284-481 (487)
237 PF13371 TPR_9: Tetratricopept 98.5 7E-07 1.5E-11 70.9 8.7 65 40-104 3-67 (73)
238 KOG3785 Uncharacterized conser 98.5 2.3E-06 5E-11 85.3 13.8 134 4-137 63-222 (557)
239 PF13512 TPR_18: Tetratricopep 98.5 2.6E-06 5.7E-11 75.7 12.4 106 31-136 9-135 (142)
240 PRK10866 outer membrane biogen 98.5 1.3E-05 2.7E-10 79.8 18.6 135 30-164 30-203 (243)
241 KOG4648 Uncharacterized conser 98.5 4.4E-07 9.6E-12 89.9 7.9 103 35-137 100-202 (536)
242 PLN03218 maturation of RBCL 1; 98.4 1.8E-05 4E-10 93.7 22.4 155 3-161 547-709 (1060)
243 COG1729 Uncharacterized protei 98.4 3.9E-06 8.4E-11 82.2 13.9 105 1-105 144-254 (262)
244 KOG4648 Uncharacterized conser 98.4 7.6E-07 1.6E-11 88.3 8.9 105 3-107 102-206 (536)
245 PF13525 YfiO: Outer membrane 98.4 9.6E-06 2.1E-10 78.5 16.5 135 31-165 4-170 (203)
246 TIGR02919 accessory Sec system 98.4 6.7E-06 1.5E-10 88.4 16.8 127 371-514 291-419 (438)
247 KOG4555 TPR repeat-containing 98.4 6E-06 1.3E-10 71.1 12.9 113 35-147 46-172 (175)
248 PRK11906 transcriptional regul 98.4 3.4E-06 7.4E-11 88.5 13.9 117 13-129 319-436 (458)
249 PF04733 Coatomer_E: Coatomer 98.4 3.1E-06 6.6E-11 86.3 13.0 132 5-136 138-272 (290)
250 KOG3785 Uncharacterized conser 98.4 2.9E-06 6.3E-11 84.6 12.3 157 8-166 32-215 (557)
251 PF06552 TOM20_plant: Plant sp 98.4 2.9E-06 6.4E-11 77.7 11.1 99 14-139 7-119 (186)
252 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8.9E-06 1.9E-10 85.7 16.4 119 37-160 174-292 (395)
253 PRK10153 DNA-binding transcrip 98.4 1.1E-05 2.4E-10 88.6 17.6 133 27-162 332-479 (517)
254 KOG1127 TPR repeat-containing 98.4 2.8E-06 6E-11 94.7 12.6 150 8-159 429-619 (1238)
255 KOG4555 TPR repeat-containing 98.4 2.1E-05 4.4E-10 67.9 14.9 95 5-99 50-148 (175)
256 PF06552 TOM20_plant: Plant sp 98.4 3.5E-06 7.6E-11 77.2 10.9 59 46-104 49-118 (186)
257 TIGR03492 conserved hypothetic 98.3 4.9E-06 1.1E-10 89.0 13.4 155 368-537 221-393 (396)
258 PLN03064 alpha,alpha-trehalose 98.3 2.8E-05 6.1E-10 89.9 19.7 177 356-545 362-564 (934)
259 PLN03218 maturation of RBCL 1; 98.3 5.3E-05 1.2E-09 89.9 22.4 159 2-164 511-677 (1060)
260 PLN03081 pentatricopeptide (PP 98.3 1.6E-05 3.5E-10 91.8 18.0 155 4-163 397-555 (697)
261 PF13512 TPR_18: Tetratricopep 98.3 1.9E-05 4.1E-10 70.2 14.0 99 2-100 14-133 (142)
262 KOG1130 Predicted G-alpha GTPa 98.3 1.3E-06 2.7E-11 88.7 7.1 126 3-128 200-343 (639)
263 PF13424 TPR_12: Tetratricopep 98.3 8.8E-07 1.9E-11 71.4 5.0 62 68-129 7-75 (78)
264 PF13424 TPR_12: Tetratricopep 98.3 1.1E-06 2.3E-11 70.9 5.3 66 30-95 3-75 (78)
265 PF14938 SNAP: Soluble NSF att 98.3 6.6E-06 1.4E-10 84.0 12.2 133 3-136 80-232 (282)
266 COG4105 ComL DNA uptake lipopr 98.3 7.9E-05 1.7E-09 72.5 18.8 160 1-160 37-228 (254)
267 COG4785 NlpI Lipoprotein NlpI, 98.3 1.3E-05 2.7E-10 75.2 12.6 101 34-134 67-167 (297)
268 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00013 2.9E-09 69.4 20.1 131 2-132 99-234 (291)
269 TIGR01426 MGT glycosyltransfer 98.2 4.2E-05 9E-10 82.0 17.9 165 354-540 223-390 (392)
270 PF12569 NARP1: NMDA receptor- 98.2 4.1E-05 8.9E-10 83.8 17.5 138 32-169 194-338 (517)
271 PLN03081 pentatricopeptide (PP 98.2 1.9E-05 4.2E-10 91.2 15.9 158 1-164 293-454 (697)
272 COG0707 MurG UDP-N-acetylgluco 98.2 6.9E-05 1.5E-09 78.4 18.4 240 253-520 80-338 (357)
273 COG3071 HemY Uncharacterized e 98.2 0.00015 3.3E-09 74.1 19.9 158 3-163 158-388 (400)
274 KOG2376 Signal recognition par 98.2 6.2E-05 1.3E-09 80.2 16.5 123 7-133 21-143 (652)
275 PF13524 Glyco_trans_1_2: Glyc 98.1 1.2E-05 2.6E-10 67.1 8.8 90 440-537 1-91 (92)
276 PLN03077 Protein ECB2; Provisi 98.1 6.8E-05 1.5E-09 88.8 18.5 151 6-161 562-716 (857)
277 KOG2376 Signal recognition par 98.1 6E-05 1.3E-09 80.2 15.4 130 2-134 83-258 (652)
278 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00044 9.5E-09 65.8 20.1 158 2-161 63-227 (291)
279 KOG4642 Chaperone-dependent E3 98.1 7.3E-06 1.6E-10 77.9 7.0 90 6-95 18-107 (284)
280 PRK04841 transcriptional regul 98.1 0.00014 3.1E-09 86.7 19.9 162 3-164 457-640 (903)
281 KOG1941 Acetylcholine receptor 98.1 6E-05 1.3E-09 75.7 13.7 163 2-164 87-274 (518)
282 COG4785 NlpI Lipoprotein NlpI, 98.1 4E-05 8.7E-10 71.9 11.4 156 2-162 69-225 (297)
283 KOG2796 Uncharacterized conser 98.1 9.1E-05 2E-09 71.5 14.0 133 2-134 181-320 (366)
284 PLN03077 Protein ECB2; Provisi 98.0 0.00021 4.4E-09 84.7 19.3 150 3-162 429-615 (857)
285 KOG4642 Chaperone-dependent E3 98.0 1.4E-05 3E-10 76.0 7.0 93 37-129 15-107 (284)
286 COG1819 Glycosyl transferases, 98.0 0.00048 1E-08 73.8 19.7 165 353-542 234-401 (406)
287 KOG3081 Vesicle coat complex C 98.0 0.00041 8.9E-09 67.4 16.2 143 5-156 115-261 (299)
288 COG0297 GlgA Glycogen synthase 98.0 0.00025 5.4E-09 76.7 16.6 177 355-545 292-480 (487)
289 PLN02670 transferase, transfer 97.9 0.00031 6.8E-09 76.4 17.1 175 355-543 277-466 (472)
290 KOG4340 Uncharacterized conser 97.9 7.1E-05 1.5E-09 73.4 10.5 128 2-129 48-207 (459)
291 KOG0545 Aryl-hydrocarbon recep 97.9 0.00038 8.1E-09 66.7 14.7 108 32-139 178-303 (329)
292 PLN02863 UDP-glucoronosyl/UDP- 97.9 0.0005 1.1E-08 75.2 17.9 104 355-468 282-389 (477)
293 PLN02992 coniferyl-alcohol glu 97.9 0.00051 1.1E-08 74.8 17.3 141 355-507 262-428 (481)
294 KOG1070 rRNA processing protei 97.9 0.00082 1.8E-08 78.0 19.1 158 3-160 1535-1694(1710)
295 COG3071 HemY Uncharacterized e 97.9 0.00045 9.7E-09 70.7 15.3 122 4-129 269-390 (400)
296 PHA03392 egt ecdysteroid UDP-g 97.8 0.00087 1.9E-08 74.0 18.8 162 357-539 297-464 (507)
297 cd03784 GT1_Gtf_like This fami 97.8 0.00066 1.4E-08 72.9 17.6 140 355-516 238-381 (401)
298 PRK04841 transcriptional regul 97.8 0.00095 2.1E-08 79.6 20.6 162 3-164 414-601 (903)
299 KOG1941 Acetylcholine receptor 97.8 7.5E-05 1.6E-09 75.0 9.1 127 3-129 127-275 (518)
300 PLN02410 UDP-glucoronosyl/UDP- 97.8 0.0007 1.5E-08 73.5 17.3 145 355-507 263-411 (451)
301 PF13428 TPR_14: Tetratricopep 97.8 4.8E-05 1E-09 53.8 5.4 39 69-107 4-42 (44)
302 PRK09814 beta-1,6-galactofuran 97.8 0.00017 3.7E-09 75.5 11.9 131 358-520 170-312 (333)
303 PLN02764 glycosyltransferase f 97.8 0.00054 1.2E-08 74.0 15.9 183 354-550 255-449 (453)
304 PLN03004 UDP-glycosyltransfera 97.8 0.00051 1.1E-08 74.4 15.6 147 355-510 269-428 (451)
305 PF13428 TPR_14: Tetratricopep 97.8 5E-05 1.1E-09 53.8 5.2 42 33-74 2-43 (44)
306 COG3118 Thioredoxin domain-con 97.8 0.0011 2.4E-08 65.7 15.8 151 4-156 140-292 (304)
307 PF13431 TPR_17: Tetratricopep 97.8 2.8E-05 6.1E-10 51.6 3.3 32 89-120 2-33 (34)
308 KOG0376 Serine-threonine phosp 97.7 4.8E-05 1E-09 79.6 6.4 103 37-139 9-111 (476)
309 PLN02167 UDP-glycosyltransfera 97.7 0.00086 1.9E-08 73.5 16.5 139 355-506 279-434 (475)
310 PLN02562 UDP-glycosyltransfera 97.7 0.0016 3.5E-08 70.8 18.0 143 356-513 273-420 (448)
311 PRK12446 undecaprenyldiphospho 97.7 0.00079 1.7E-08 71.0 15.2 229 253-511 80-330 (352)
312 PF04184 ST7: ST7 protein; In 97.7 0.0011 2.3E-08 70.1 15.4 118 8-127 178-322 (539)
313 PF13431 TPR_17: Tetratricopep 97.7 4.2E-05 9.1E-10 50.7 3.3 31 21-51 2-32 (34)
314 KOG2610 Uncharacterized conser 97.7 0.001 2.2E-08 66.4 14.3 156 5-160 110-271 (491)
315 PLN02210 UDP-glucosyl transfer 97.7 0.00091 2E-08 72.8 15.4 139 355-507 268-416 (456)
316 PF05843 Suf: Suppressor of fo 97.7 0.00081 1.8E-08 68.5 14.1 124 9-132 12-139 (280)
317 KOG0376 Serine-threonine phosp 97.7 6.5E-05 1.4E-09 78.6 6.0 108 3-110 9-116 (476)
318 PF00201 UDPGT: UDP-glucoronos 97.6 0.00042 9.1E-09 76.8 12.7 162 355-539 275-441 (500)
319 TIGR03590 PseG pseudaminic aci 97.6 0.0017 3.6E-08 66.2 15.9 188 253-467 69-267 (279)
320 KOG0545 Aryl-hydrocarbon recep 97.6 0.00039 8.5E-09 66.5 9.8 101 2-102 182-300 (329)
321 PLN02554 UDP-glycosyltransfera 97.6 0.0028 6.1E-08 69.6 18.1 143 355-511 273-446 (481)
322 PLN02448 UDP-glycosyltransfera 97.6 0.0014 2.9E-08 71.7 15.5 135 355-507 273-416 (459)
323 KOG2053 Mitochondrial inherita 97.6 0.0016 3.5E-08 72.8 15.8 128 9-137 20-147 (932)
324 PLN02207 UDP-glycosyltransfera 97.6 0.0031 6.6E-08 68.6 17.8 104 354-468 273-378 (468)
325 PLN00414 glycosyltransferase f 97.6 0.0026 5.6E-08 69.0 17.1 155 354-519 250-416 (446)
326 COG4105 ComL DNA uptake lipopr 97.6 0.0033 7.3E-08 61.3 15.8 132 31-162 33-193 (254)
327 TIGR02094 more_P_ylases alpha- 97.6 0.0022 4.7E-08 71.9 16.7 179 353-540 385-598 (601)
328 PLN03007 UDP-glucosyltransfera 97.5 0.0035 7.5E-08 69.0 17.8 108 355-468 284-391 (482)
329 PLN02208 glycosyltransferase f 97.5 0.0025 5.3E-08 69.1 16.2 151 354-519 249-415 (442)
330 PLN00164 glucosyltransferase; 97.5 0.0021 4.5E-08 70.5 15.7 151 355-518 271-444 (480)
331 PF13528 Glyco_trans_1_3: Glyc 97.5 0.0012 2.6E-08 68.4 13.4 109 355-489 191-300 (318)
332 KOG1586 Protein required for f 97.5 0.0055 1.2E-07 58.6 16.0 157 4-161 40-220 (288)
333 PLN02555 limonoid glucosyltran 97.5 0.002 4.4E-08 70.3 15.2 153 356-519 277-441 (480)
334 KOG1915 Cell cycle control pro 97.5 0.0072 1.6E-07 63.2 17.6 126 7-133 82-207 (677)
335 PLN02173 UDP-glucosyl transfer 97.5 0.0018 3.9E-08 70.1 14.0 139 355-507 263-409 (449)
336 PF00515 TPR_1: Tetratricopept 97.5 0.00022 4.8E-09 47.2 4.4 32 101-132 2-33 (34)
337 PF00515 TPR_1: Tetratricopept 97.5 0.00025 5.3E-09 46.9 4.6 31 34-64 3-33 (34)
338 PF04184 ST7: ST7 protein; In 97.4 0.0022 4.8E-08 67.7 13.6 123 37-163 173-322 (539)
339 PF05843 Suf: Suppressor of fo 97.4 0.0023 4.9E-08 65.2 13.4 129 34-163 3-134 (280)
340 PF02684 LpxB: Lipid-A-disacch 97.4 0.002 4.4E-08 67.7 13.2 140 367-519 199-353 (373)
341 PF07719 TPR_2: Tetratricopept 97.4 0.00038 8.2E-09 45.9 5.1 32 101-132 2-33 (34)
342 KOG1585 Protein required for f 97.4 0.0082 1.8E-07 57.8 15.7 126 2-127 35-177 (308)
343 KOG1915 Cell cycle control pro 97.4 0.0078 1.7E-07 63.0 16.8 151 9-164 377-535 (677)
344 KOG2053 Mitochondrial inherita 97.4 0.0017 3.8E-08 72.5 12.7 120 43-165 20-139 (932)
345 KOG2941 Beta-1,4-mannosyltrans 97.4 0.0018 4E-08 65.0 11.6 125 384-520 291-423 (444)
346 PLN02534 UDP-glycosyltransfera 97.4 0.0048 1E-07 67.6 15.9 106 355-468 282-390 (491)
347 PLN03015 UDP-glucosyl transfer 97.4 0.0029 6.2E-08 68.7 14.0 104 355-468 266-381 (470)
348 KOG2796 Uncharacterized conser 97.4 0.0059 1.3E-07 59.3 14.3 127 34-162 179-312 (366)
349 PF02350 Epimerase_2: UDP-N-ac 97.4 0.0022 4.7E-08 67.4 12.6 135 354-508 178-320 (346)
350 PF07719 TPR_2: Tetratricopept 97.3 0.00049 1.1E-08 45.3 5.1 31 34-64 3-33 (34)
351 PF03704 BTAD: Bacterial trans 97.3 0.007 1.5E-07 55.0 14.5 61 68-128 64-124 (146)
352 PLN02152 indole-3-acetate beta 97.3 0.011 2.4E-07 64.2 18.1 143 355-507 260-418 (455)
353 COG1519 KdtA 3-deoxy-D-manno-o 97.3 0.014 3E-07 61.1 17.9 260 246-520 104-400 (419)
354 PF03704 BTAD: Bacterial trans 97.3 0.0056 1.2E-07 55.6 13.7 91 5-95 13-125 (146)
355 KOG3081 Vesicle coat complex C 97.3 0.0074 1.6E-07 58.9 14.3 127 6-134 145-276 (299)
356 PF10300 DUF3808: Protein of u 97.3 0.0035 7.6E-08 68.5 13.8 104 13-116 248-356 (468)
357 PRK02797 4-alpha-L-fucosyltran 97.2 0.0071 1.5E-07 60.8 14.0 263 255-543 30-317 (322)
358 KOG1308 Hsp70-interacting prot 97.2 0.00028 6.2E-09 70.8 4.1 92 42-133 124-215 (377)
359 TIGR00661 MJ1255 conserved hyp 97.2 0.0042 9E-08 64.7 13.0 70 417-491 229-299 (321)
360 PF10300 DUF3808: Protein of u 97.2 0.023 5.1E-07 62.1 19.0 140 11-152 201-356 (468)
361 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0024 5.2E-08 63.9 10.0 105 32-136 81-189 (390)
362 KOG2471 TPR repeat-containing 97.2 0.0026 5.6E-08 66.6 10.3 135 6-140 214-375 (696)
363 KOG1586 Protein required for f 97.1 0.031 6.7E-07 53.6 16.4 132 9-140 84-235 (288)
364 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0052 1.1E-07 61.7 11.8 96 3-98 86-185 (390)
365 cd04299 GT1_Glycogen_Phosphory 97.0 0.022 4.8E-07 65.4 16.5 114 353-468 474-600 (778)
366 PF13281 DUF4071: Domain of un 96.9 0.039 8.4E-07 57.6 16.7 133 2-135 183-340 (374)
367 KOG1070 rRNA processing protei 96.9 0.042 9.1E-07 64.6 18.3 156 6-162 1466-1626(1710)
368 PF13281 DUF4071: Domain of un 96.9 0.044 9.6E-07 57.2 17.1 158 4-162 147-331 (374)
369 COG2976 Uncharacterized protei 96.9 0.037 8E-07 51.8 14.6 97 35-133 92-192 (207)
370 KOG4507 Uncharacterized conser 96.9 0.0054 1.2E-07 65.5 9.6 107 36-142 610-718 (886)
371 PF13181 TPR_8: Tetratricopept 96.8 0.0023 4.9E-08 42.1 4.3 32 101-132 2-33 (34)
372 TIGR03568 NeuC_NnaA UDP-N-acet 96.8 0.034 7.4E-07 58.9 15.1 134 356-507 201-339 (365)
373 KOG1308 Hsp70-interacting prot 96.8 0.00059 1.3E-08 68.6 1.6 57 78-134 126-182 (377)
374 KOG2047 mRNA splicing factor [ 96.8 0.069 1.5E-06 58.2 17.0 129 2-130 391-541 (835)
375 PF13181 TPR_8: Tetratricopept 96.7 0.0028 6E-08 41.7 4.2 30 34-63 3-32 (34)
376 KOG4507 Uncharacterized conser 96.7 0.004 8.7E-08 66.5 7.2 106 5-110 614-720 (886)
377 KOG2047 mRNA splicing factor [ 96.7 0.067 1.4E-06 58.3 16.2 150 9-160 358-535 (835)
378 PF05693 Glycogen_syn: Glycoge 96.7 0.0077 1.7E-07 65.8 9.4 138 403-547 424-586 (633)
379 KOG2610 Uncharacterized conser 96.7 0.045 9.7E-07 55.1 13.9 120 37-158 108-231 (491)
380 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.028 6.1E-07 57.9 12.9 200 260-475 53-264 (311)
381 KOG2471 TPR repeat-containing 96.5 0.0054 1.2E-07 64.3 6.8 109 4-112 246-381 (696)
382 KOG3824 Huntingtin interacting 96.5 0.01 2.2E-07 58.8 8.0 70 71-140 121-190 (472)
383 PF02259 FAT: FAT domain; Int 96.5 0.092 2E-06 55.0 16.1 58 3-60 151-212 (352)
384 KOG1585 Protein required for f 96.4 0.12 2.5E-06 50.1 14.5 149 5-156 78-247 (308)
385 COG3898 Uncharacterized membra 96.4 0.23 5E-06 51.2 17.1 124 10-133 166-296 (531)
386 KOG3824 Huntingtin interacting 96.4 0.009 2E-07 59.2 7.0 73 37-109 121-193 (472)
387 PF14561 TPR_20: Tetratricopep 96.3 0.037 8E-07 45.7 9.5 75 85-159 7-81 (90)
388 COG0381 WecB UDP-N-acetylgluco 96.3 0.76 1.6E-05 48.0 20.9 298 196-515 11-350 (383)
389 KOG3617 WD40 and TPR repeat-co 96.2 0.061 1.3E-06 59.9 13.1 95 33-127 859-994 (1416)
390 PRK15180 Vi polysaccharide bio 96.2 0.013 2.7E-07 61.4 7.3 143 9-151 300-442 (831)
391 PF04781 DUF627: Protein of un 96.2 0.037 8E-07 47.0 8.9 103 4-129 2-107 (111)
392 PF08424 NRDE-2: NRDE-2, neces 96.2 0.49 1.1E-05 49.1 19.4 147 18-164 5-182 (321)
393 PF13176 TPR_7: Tetratricopept 96.2 0.009 1.9E-07 40.0 4.3 25 35-59 2-26 (36)
394 COG3898 Uncharacterized membra 96.2 0.7 1.5E-05 47.8 19.3 91 7-98 197-295 (531)
395 COG0790 FOG: TPR repeat, SEL1 96.2 0.43 9.3E-06 48.7 18.7 122 12-139 91-228 (292)
396 PRK01021 lpxB lipid-A-disaccha 96.1 0.096 2.1E-06 58.0 13.8 154 351-520 407-585 (608)
397 PF13176 TPR_7: Tetratricopept 96.1 0.011 2.3E-07 39.7 4.2 25 103-127 2-26 (36)
398 COG0790 FOG: TPR repeat, SEL1 96.1 0.27 5.9E-06 50.2 16.7 108 2-114 113-236 (292)
399 COG3118 Thioredoxin domain-con 96.1 0.15 3.3E-06 50.9 13.7 132 31-165 133-265 (304)
400 COG0763 LpxB Lipid A disacchar 96.0 0.11 2.5E-06 53.8 13.3 139 367-518 203-356 (381)
401 KOG1550 Extracellular protein 96.0 0.35 7.7E-06 54.2 18.5 125 2-130 248-394 (552)
402 PF13174 TPR_6: Tetratricopept 96.0 0.013 2.8E-07 38.0 4.3 31 102-132 2-32 (33)
403 PF09613 HrpB1_HrpK: Bacterial 96.0 0.11 2.3E-06 47.5 11.5 99 33-132 11-109 (160)
404 PF13174 TPR_6: Tetratricopept 96.0 0.013 2.8E-07 38.0 4.3 31 68-98 2-32 (33)
405 KOG1192 UDP-glucuronosyl and U 96.0 0.095 2E-06 58.0 13.8 145 357-518 278-434 (496)
406 PRK10117 trehalose-6-phosphate 95.9 0.34 7.3E-06 52.6 16.8 177 357-544 255-455 (474)
407 PF14561 TPR_20: Tetratricopep 95.8 0.078 1.7E-06 43.8 9.1 64 52-115 8-73 (90)
408 PRK10941 hypothetical protein; 95.8 0.061 1.3E-06 54.0 9.9 71 68-138 183-253 (269)
409 COG2976 Uncharacterized protei 95.7 0.11 2.5E-06 48.6 10.6 97 3-100 94-193 (207)
410 PF07429 Glyco_transf_56: 4-al 95.7 0.25 5.4E-06 50.6 13.9 123 357-488 187-312 (360)
411 PF04781 DUF627: Protein of un 95.7 0.091 2E-06 44.7 8.9 97 39-160 3-102 (111)
412 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.074 1.6E-06 39.1 7.2 39 101-139 2-40 (53)
413 PF04007 DUF354: Protein of un 95.6 0.77 1.7E-05 47.8 17.6 214 254-498 73-302 (335)
414 PF04910 Tcf25: Transcriptiona 95.6 1.2 2.6E-05 46.9 19.3 143 25-169 33-226 (360)
415 PF12968 DUF3856: Domain of Un 95.6 0.33 7.2E-06 41.7 12.0 95 8-129 19-129 (144)
416 KOG0530 Protein farnesyltransf 95.6 0.27 6E-06 48.1 13.0 131 12-142 57-189 (318)
417 PRK10941 hypothetical protein; 95.5 0.15 3.3E-06 51.2 11.7 76 34-109 183-258 (269)
418 cd03789 GT1_LPS_heptosyltransf 95.5 0.2 4.3E-06 50.9 12.9 95 371-476 139-233 (279)
419 PF12968 DUF3856: Domain of Un 95.3 0.29 6.2E-06 42.0 10.5 93 77-169 20-133 (144)
420 PF04101 Glyco_tran_28_C: Glyc 95.2 0.018 3.9E-07 53.6 3.7 91 417-514 55-152 (167)
421 PF09613 HrpB1_HrpK: Bacterial 95.2 0.84 1.8E-05 41.7 14.2 81 3-83 15-95 (160)
422 smart00028 TPR Tetratricopepti 95.2 0.031 6.8E-07 34.9 3.8 31 102-132 3-33 (34)
423 KOG3617 WD40 and TPR repeat-co 95.2 0.28 6E-06 55.0 12.9 60 68-127 860-939 (1416)
424 KOG2396 HAT (Half-A-TPR) repea 95.0 0.31 6.6E-06 51.9 12.1 92 49-140 88-180 (568)
425 smart00028 TPR Tetratricopepti 94.9 0.039 8.4E-07 34.5 3.7 30 34-63 3-32 (34)
426 COG4976 Predicted methyltransf 94.9 0.038 8.3E-07 52.8 4.8 62 75-136 4-65 (287)
427 KOG2396 HAT (Half-A-TPR) repea 94.9 0.26 5.7E-06 52.4 11.3 91 16-106 89-180 (568)
428 PF07079 DUF1347: Protein of u 94.8 1 2.2E-05 47.6 15.3 120 4-126 385-521 (549)
429 PF00982 Glyco_transf_20: Glyc 94.8 0.56 1.2E-05 51.3 14.3 178 355-541 274-473 (474)
430 TIGR02201 heptsyl_trn_III lipo 94.8 0.56 1.2E-05 49.2 14.1 112 355-476 181-295 (344)
431 PF01075 Glyco_transf_9: Glyco 94.8 0.076 1.6E-06 52.8 7.0 110 356-476 106-218 (247)
432 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.14 3.1E-06 37.5 6.5 34 35-68 4-37 (53)
433 PF08424 NRDE-2: NRDE-2, neces 94.7 1.1 2.4E-05 46.5 15.8 116 53-168 6-134 (321)
434 PF04910 Tcf25: Transcriptiona 94.7 0.78 1.7E-05 48.4 14.5 131 2-132 44-225 (360)
435 PF08631 SPO22: Meiosis protei 94.6 3.3 7E-05 42.1 18.6 122 9-130 4-151 (278)
436 KOG3364 Membrane protein invol 94.6 0.44 9.5E-06 42.0 10.2 74 65-138 31-109 (149)
437 KOG1550 Extracellular protein 94.5 1.3 2.7E-05 49.8 16.7 123 2-130 292-427 (552)
438 PLN02205 alpha,alpha-trehalose 94.5 1.1 2.4E-05 52.6 16.7 184 356-545 338-554 (854)
439 PRK14089 ipid-A-disaccharide s 94.5 0.22 4.9E-06 52.1 9.9 77 368-465 183-259 (347)
440 TIGR02561 HrpB1_HrpK type III 94.5 0.31 6.7E-06 43.8 9.2 84 34-117 12-95 (153)
441 KOG4814 Uncharacterized conser 94.5 0.25 5.3E-06 53.9 10.1 94 2-95 358-457 (872)
442 PF05159 Capsule_synth: Capsul 94.4 0.054 1.2E-06 54.8 5.1 86 369-466 138-224 (269)
443 COG4649 Uncharacterized protei 94.3 3.7 8.1E-05 38.0 15.9 125 4-128 64-195 (221)
444 KOG2300 Uncharacterized conser 94.3 2.9 6.2E-05 44.6 17.1 146 3-151 372-540 (629)
445 PRK10916 ADP-heptose:LPS hepto 94.2 0.93 2E-05 47.6 14.0 111 356-476 181-296 (348)
446 PF09986 DUF2225: Uncharacteri 94.1 0.65 1.4E-05 45.1 11.6 29 101-129 166-194 (214)
447 PF10602 RPN7: 26S proteasome 94.0 0.95 2.1E-05 42.6 12.2 97 32-128 36-141 (177)
448 COG4976 Predicted methyltransf 94.0 0.081 1.7E-06 50.7 4.8 60 41-100 4-63 (287)
449 KOG1310 WD40 repeat protein [G 94.0 0.16 3.5E-06 54.1 7.4 90 44-133 386-478 (758)
450 COG4671 Predicted glycosyl tra 94.0 2.6 5.6E-05 43.4 15.6 126 354-490 217-346 (400)
451 KOG2300 Uncharacterized conser 93.9 3.5 7.7E-05 44.0 16.9 148 4-154 329-503 (629)
452 PF02259 FAT: FAT domain; Int 93.7 2.4 5.2E-05 44.2 16.0 112 29-140 143-298 (352)
453 PF13374 TPR_10: Tetratricopep 93.5 0.16 3.5E-06 34.6 4.6 29 101-129 3-31 (42)
454 PF09986 DUF2225: Uncharacteri 93.4 0.51 1.1E-05 45.8 9.4 97 11-107 90-207 (214)
455 KOG1310 WD40 repeat protein [G 93.3 0.23 5E-06 53.0 7.2 90 11-100 387-479 (758)
456 KOG0530 Protein farnesyltransf 93.3 4.2 9.1E-05 40.1 15.1 104 44-147 55-160 (318)
457 PF10345 Cohesin_load: Cohesin 93.2 14 0.0003 42.2 22.1 166 2-168 63-257 (608)
458 PF13374 TPR_10: Tetratricopep 93.2 0.2 4.3E-06 34.1 4.6 29 33-61 3-31 (42)
459 PF10602 RPN7: 26S proteasome 93.1 0.97 2.1E-05 42.5 10.6 95 2-96 40-143 (177)
460 COG2909 MalT ATP-dependent tra 92.9 5.4 0.00012 45.8 17.5 164 4-167 464-649 (894)
461 TIGR02561 HrpB1_HrpK type III 92.9 3.3 7.2E-05 37.3 12.9 77 6-82 18-94 (153)
462 KOG1839 Uncharacterized protei 92.8 1.5 3.3E-05 52.1 13.5 127 4-130 938-1087(1236)
463 COG3914 Spy Predicted O-linked 92.6 1.3 2.8E-05 48.3 11.8 111 4-114 73-190 (620)
464 PRK10422 lipopolysaccharide co 92.5 1.5 3.1E-05 46.3 12.2 114 354-476 182-297 (352)
465 COG4370 Uncharacterized protei 92.5 0.15 3.3E-06 50.8 4.2 107 428-544 302-411 (412)
466 COG3980 spsG Spore coat polysa 92.4 0.96 2.1E-05 45.0 9.7 137 360-517 162-304 (318)
467 PRK10017 colanic acid biosynth 92.3 4.9 0.00011 43.4 16.0 93 416-520 306-403 (426)
468 KOG4814 Uncharacterized conser 92.0 1.4 3.1E-05 48.3 11.1 96 34-129 356-457 (872)
469 PF10345 Cohesin_load: Cohesin 92.0 16 0.00035 41.6 20.6 151 14-165 37-208 (608)
470 KOG1258 mRNA processing protei 91.7 13 0.00027 41.1 17.9 113 9-121 308-421 (577)
471 COG0380 OtsA Trehalose-6-phosp 91.7 6.6 0.00014 42.8 15.9 178 354-542 279-479 (486)
472 KOG3807 Predicted membrane pro 91.4 6.9 0.00015 39.8 14.3 110 9-131 195-306 (556)
473 PRK13184 pknD serine/threonine 91.4 2.9 6.2E-05 49.4 13.7 98 6-104 483-590 (932)
474 KOG3364 Membrane protein invol 91.2 4.8 0.0001 35.7 11.5 76 30-105 30-110 (149)
475 KOG0529 Protein geranylgeranyl 91.0 6.1 0.00013 41.5 14.1 136 10-145 40-194 (421)
476 PF07079 DUF1347: Protein of u 90.8 5.4 0.00012 42.3 13.6 127 3-129 11-157 (549)
477 COG5191 Uncharacterized conser 90.1 0.52 1.1E-05 47.2 5.3 86 55-140 96-182 (435)
478 PF12862 Apc5: Anaphase-promot 89.9 1.8 3.9E-05 36.0 7.8 28 68-95 43-70 (94)
479 KOG1839 Uncharacterized protei 89.7 1.5 3.2E-05 52.2 9.3 127 2-128 977-1127(1236)
480 COG2912 Uncharacterized conser 89.4 1.5 3.3E-05 43.5 8.0 71 68-138 183-253 (269)
481 PF12862 Apc5: Anaphase-promot 89.4 1.8 3.8E-05 36.0 7.4 55 77-131 9-72 (94)
482 PF10373 EST1_DNA_bind: Est1 D 89.4 1.3 2.9E-05 44.5 8.1 62 17-78 1-62 (278)
483 COG2912 Uncharacterized conser 89.2 2.6 5.6E-05 41.9 9.4 75 34-108 183-257 (269)
484 PF10373 EST1_DNA_bind: Est1 D 88.2 1.4 3.1E-05 44.3 7.4 62 51-112 1-62 (278)
485 KOG2581 26S proteasome regulat 88.2 15 0.00032 38.6 14.2 126 9-134 137-281 (493)
486 KOG1914 mRNA cleavage and poly 88.1 21 0.00046 38.9 15.7 147 14-162 309-461 (656)
487 PF15015 NYD-SP12_N: Spermatog 88.1 2.2 4.7E-05 44.7 8.2 85 39-123 183-285 (569)
488 COG5191 Uncharacterized conser 87.5 0.92 2E-05 45.5 5.0 86 22-107 97-183 (435)
489 PF09670 Cas_Cas02710: CRISPR- 87.3 7.9 0.00017 41.2 12.4 122 3-129 136-270 (379)
490 KOG2422 Uncharacterized conser 87.0 54 0.0012 36.2 18.6 139 11-152 251-432 (665)
491 PF10579 Rapsyn_N: Rapsyn N-te 86.7 4.8 0.0001 32.0 7.7 57 72-128 12-71 (80)
492 KOG1258 mRNA processing protei 86.7 25 0.00054 38.8 15.7 127 12-138 269-404 (577)
493 KOG1914 mRNA cleavage and poly 86.6 45 0.00098 36.5 17.1 147 13-160 346-496 (656)
494 COG3629 DnrI DNA-binding trans 86.5 5.1 0.00011 40.4 9.8 61 68-128 155-215 (280)
495 PF07720 TPR_3: Tetratricopept 86.5 2.3 4.9E-05 28.4 5.0 20 35-54 4-23 (36)
496 PF10933 DUF2827: Protein of u 86.4 12 0.00026 38.9 12.4 127 378-523 213-347 (364)
497 KOG0985 Vesicle coat protein c 86.3 7.5 0.00016 45.2 11.8 24 103-126 1223-1246(1666)
498 COG3629 DnrI DNA-binding trans 86.3 4 8.6E-05 41.1 8.9 64 32-95 153-216 (280)
499 PF07721 TPR_4: Tetratricopept 86.2 0.91 2E-05 27.7 2.8 22 102-123 3-24 (26)
500 cd05565 PTS_IIB_lactose PTS_II 86.1 2.3 5E-05 35.7 6.1 78 389-471 4-83 (99)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-116 Score=897.41 Aligned_cols=560 Identities=41% Similarity=0.627 Sum_probs=531.5
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
++|||+++.++|++++|..+|+++++..|+.+.++.|||.+|.++|++++|+.+|+.+++++|..++++.|+|+.|..+|
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCc-----HHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKL 155 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~-----~~a 155 (619)
+...|+.+|.+|++++|..++++.|||.+|...|+..+|+..|+.++++.|+.+++++|++.++.+...+.+ ++.
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876 677
Q ss_pred HHHHHHHHH--HHHhhc----------------------------------cCCCCCCCCCCCCCCccccccCCCCccCh
Q 007075 156 FEAHRDWGK--RFMRLY----------------------------------SQYTSWDNTKDPERPLVIGYVSPDYFTHS 199 (619)
Q Consensus 156 ~~~~~~~~~--~~~~~~----------------------------------~~~~~~~~~~~~~~~LrIgyvs~~~~~h~ 199 (619)
++.+++|.. +++... +++..|.+.+.+++||||||+|+||++||
T Consensus 517 ~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp 596 (966)
T KOG4626|consen 517 VSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHP 596 (966)
T ss_pred HHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCc
Confidence 788888773 333322 34667777788889999999999999999
Q ss_pred HHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEcccCCHHHHHHHhHhCCccEEEeCCCCCCCCc
Q 007075 200 VSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK 279 (619)
Q Consensus 200 v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~~r 279 (619)
+.+++..+..+||++++|||||+..+..+. .||.++.+.+++|.++++++...+|+.|++|+|||||.+.|||.|+|
T Consensus 597 ~Shlmqsv~gmHdr~kveVfcYals~~d~t---~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgar 673 (966)
T KOG4626|consen 597 TSHLMQSVPGMHDRSKVEVFCYALSVNDGT---NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGAR 673 (966)
T ss_pred hHHHhccCcCcCCccceEEEEEEeecCCCc---hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccc
Confidence 999999999999999999999999877653 38999999999999999999999999999999999999999999999
Q ss_pred chhhccCCcceeEecccCCCCCCCCCccEEEecCCCCCCCccCCCccceEEcCCCccccCCCC--------CCCCCCCCC
Q 007075 280 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTP 351 (619)
Q Consensus 280 ~~~~a~r~Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~p~~--------~~~~~~~~~ 351 (619)
.++||+|||||||+|+|||+|||.+.|||+|+|.+..|.+....|+||+++||+||+++++.+ ...|.++.+
T Consensus 674 neifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y 753 (966)
T KOG4626|consen 674 NEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQY 753 (966)
T ss_pred cceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998876 555788899
Q ss_pred CCCCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 352 ALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 352 ~l~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
++|+|+|||||||+++||+|+++++|++||+++|+++||+...|+.++ .+++..+++.|++++||+|.+-.. .+||
T Consensus 754 ~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~va~-k~eH 829 (966)
T KOG4626|consen 754 GLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSPVAA-KEEH 829 (966)
T ss_pred CCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeeccccc-hHHH
Confidence 999999999999999999999999999999999999999998887655 789999999999999999999877 6999
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHH
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~ 511 (619)
+.++..+||+|||++++|+||.+|.||+|||+|||+|+++++||++|+|..+|++++|+.+.+||++++|+|++|.+.++
T Consensus 830 vrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~ 909 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLK 909 (966)
T ss_pred HHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHhhhcc
Q 007075 512 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 567 (619)
Q Consensus 512 ~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~~~~g~~p~~~~~~~~~~~~~~ 567 (619)
.+|..+|..+..||+||...|+..||++|.+||++||.|+.|+.+|++.+++.+.+
T Consensus 910 ~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 910 KLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred HHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999999998876543
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-93 Score=733.70 Aligned_cols=525 Identities=32% Similarity=0.496 Sum_probs=454.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 007075 15 DMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK- 91 (619)
Q Consensus 15 ~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~- 91 (619)
.-++..+...+.+++.++..+.. +...+...++...+.-....++..+|+++.+..+|+.++...|....++..+.+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33666666667778888776433 577788889998999999999999999999999999998888877777666655
Q ss_pred HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------HHHh
Q 007075 92 AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA------------------MNYI 147 (619)
Q Consensus 92 al~~~p~~~~a~~~L------g~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la------------------~~~~ 147 (619)
+....|++......+ +..+..+|+.+++....+++..+.|.++.....+..+ ..+.
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~ 207 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALF 207 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHH
Confidence 888899887765555 8888889999999999999999999886554332211 1110
Q ss_pred hc----------CCcHHHHHHHHHHHHHHHhhc---cCCCCCC-CCCCCCCCccccccCCCCccChHHHhhHhHhhhhcC
Q 007075 148 NE----------GHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY 213 (619)
Q Consensus 148 ~~----------g~~~~a~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~LrIgyvs~~~~~h~v~~~~~~~l~~~d~ 213 (619)
.. .++..-.....++.+.+.... ..++.|+ +.+...+++||||+|++++.|+++++...++++||+
T Consensus 208 ~~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDR 287 (620)
T COG3914 208 LGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDR 287 (620)
T ss_pred hhccccchhhhccchhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHHHHHHHHHHHhch
Confidence 00 112222223333344333222 2334444 234567899999999999999999999999999999
Q ss_pred CceEEEEEecC-cCCChhhHHHHHHHhhhCCeEEEcccCCHHHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeE
Q 007075 214 QNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 292 (619)
Q Consensus 214 ~~fev~~ys~~-~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~ 292 (619)
++||+++|+.+ +..|+...|++..+ ..|.++.+|++.++++.|+.|+||||||++|||..+|..+||+|||||||
T Consensus 288 dkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqv 363 (620)
T COG3914 288 DKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQV 363 (620)
T ss_pred hheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEE
Confidence 99999999998 66788899998877 57999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCccEEEecCCCCCCCccCCCccceEEcCCCccccCCCCCCCCC-----CCCCCCCCCCeEEEecCCCC
Q 007075 293 TWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV-----CPTPALTNGFITFGSFNNLA 367 (619)
Q Consensus 293 ~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~p~~~~~~~-----~~~~~l~~~~~~f~~~~~~~ 367 (619)
+|+|||+|+|+|.|||||+|.++.||+++.+|+|+|+|||. ||.|.+...++ +..++||++++||+|||+.+
T Consensus 364 swlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~n~~ 440 (620)
T COG3914 364 SWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFNNYF 440 (620)
T ss_pred eecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999995 67776654433 34479999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC
Q 007075 368 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 447 (619)
Q Consensus 368 K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~ 447 (619)
|++|++++.|++||+++|+|+|||+++| +++.+.++++..+++.||+.+|++|+|..+ .++|++.|..+||+|||+||
T Consensus 441 K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~~~iADlvLDTyPY 518 (620)
T COG3914 441 KITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRARYGIADLVLDTYPY 518 (620)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHhhchhheeeecccC
Confidence 9999999999999999999999999876 677899999999999999999999999998 58999999999999999999
Q ss_pred CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCC
Q 007075 448 AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 527 (619)
Q Consensus 448 ~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~ 527 (619)
+|+||++|||||||||||+.|++|++|+|+||++++|++|+|++|.++||++|+++++|...+++.|..++..+.++++|
T Consensus 519 ~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~ 598 (620)
T COG3914 519 GGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLF 598 (620)
T ss_pred CCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHh
Q 007075 528 DGQNFALGLESTYRNMWHRYC 548 (619)
Q Consensus 528 ~~~~~~~~le~~y~~~~~~~~ 548 (619)
|++.|+++||.+|.+||.+|.
T Consensus 599 d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 599 DPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999874
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=1.3e-85 Score=688.54 Aligned_cols=351 Identities=45% Similarity=0.757 Sum_probs=283.5
Q ss_pred ccccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCC-ChhhHHHHHHHhhhCCeEEEcccCC-HHHHHHHhHhC
Q 007075 186 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 263 (619)
Q Consensus 186 LrIgyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~-D~~t~~~r~~~~~~~~~~~~~~~~~-~~~~~~~i~~d 263 (619)
|||||+|+||++||+++|+..++.+||+.+||++||+.++.. +..+.+++. ..++|+++.+++ +.+++++||+|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 699999999999999999999999999999999999987643 334444444 458999999986 58999999999
Q ss_pred CccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCCCCCccEEEecCCCCCCCccCCCccceEEcCCCccccCCC--
Q 007075 264 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 341 (619)
Q Consensus 264 ~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~p~-- 341 (619)
+|||||||+|||.++|+.+||+|||||||+|||||+|||++.|||+|+|.+++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999983100
Q ss_pred --------------------------------------------------------------------------------
Q 007075 342 -------------------------------------------------------------------------------- 341 (619)
Q Consensus 342 -------------------------------------------------------------------------------- 341 (619)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCce
Q 007075 342 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 388 (619)
Q Consensus 342 ----------------------------~~~~-----~~~~~~~l~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~ 388 (619)
.+.| +.+...+||++.|||||||+++|++|+++++|++||+++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0111 1133457999999999999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 389 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 389 l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
|||...+. ..++++++.++++||+++||+|.|..+ ..+|+..|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99986542 345889999999999999999999877 78999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 469 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 469 ~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
+.+++|+|+|+|..+|++|||+.|+++|+++|++|++|++.++++|+++|+++.+|++||..+|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.3e-34 Score=322.56 Aligned_cols=511 Identities=13% Similarity=0.070 Sum_probs=339.7
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
+++||.+....|.+++|+..++.++++.|++..+..+++.++.+++++++|+..++++++.+|+++.+++.+|.++.+.|
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhhcCCcHH-
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN-----YINEGHDDK- 154 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~-----~~~~g~~~~- 154 (619)
++++|+.+|++++..+|+++.++.++|.++...|+.++|...|+++++...+-...+.+++--+. |...+-..+
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLGVEGDG 248 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999999999999999999999887666555444321111 100000000
Q ss_pred ---------HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCc-cccccCCCCccChHHHhhHhHhhhhcCCce--------
Q 007075 155 ---------LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIEAPLVYHDYQNY-------- 216 (619)
Q Consensus 155 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-rIgyvs~~~~~h~v~~~~~~~l~~~d~~~f-------- 216 (619)
.-.....+..+ ....-...|.++. ||-++...+.......++..+....++..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~ 320 (694)
T PRK15179 249 RDVPVSILVLEKMLQEIGRR--------RNAEYDAGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGY 320 (694)
T ss_pred CCCceeeeeHHHHHHHHhhc--------CcccccCCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCc
Confidence 00111111111 0001123456667 788887777666777666666666655533
Q ss_pred ------EEEEEecCc-C-CChhhHHHHHHHhhhCCeEEEccc----------------------CC------HHHHHHHh
Q 007075 217 ------KVVVYSAVV-K-ADAKTIRFREKVMKKGGIWRDIYG----------------------ID------EKKVAAMV 260 (619)
Q Consensus 217 ------ev~~ys~~~-~-~D~~t~~~r~~~~~~~~~~~~~~~----------------------~~------~~~~~~~i 260 (619)
+++|.+... . .+.....+++. +-....+.. ++ ..++.+.|
T Consensus 321 g~~~~~~V~~~~~~~~~g~~~~~~~L~~~----Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~l 396 (694)
T PRK15179 321 GVLGPVQVVCRSLRSREGADFFAATLADA----GIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVM 396 (694)
T ss_pred cCCCCcEEEEEecccccCcchHHHHHHhC----CCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHH
Confidence 566654322 1 12333333321 111111110 00 14688899
Q ss_pred HhCCccEEEeCCCCCCCCcchhhccCCc--ceeE-ecccCCCCCCC--------------CCc--cEEEecCCCCCCC--
Q 007075 261 REDKIDILVELTGHTANNKLGMMACQPA--PVQV-TWIGYPNTTGL--------------PTI--DYRITDSLADPPE-- 319 (619)
Q Consensus 261 ~~d~~Dilvdl~g~t~~~r~~~~a~r~A--pvq~-~~~G~p~ttg~--------------~~~--Dy~i~d~~~~p~~-- 319 (619)
++.++||+..++..+ +.++.++.+.+ |+-+ +.-+++..... ..+ +.+++.....-..
T Consensus 397 k~~kpDIVH~h~~~a--~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~ 474 (694)
T PRK15179 397 RSSVPSVVHIWQDGS--IFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYA 474 (694)
T ss_pred HHcCCcEEEEeCCcH--HHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHH
Confidence 999999997644332 24445554433 5433 32232211100 001 2223321100000
Q ss_pred -ccCCCccceEEcCCCccc--cCCCCCCCCC-C-CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEe
Q 007075 320 -TKQKHVEELIRLPECFLC--YTPSPEAGPV-C-PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK 392 (619)
Q Consensus 320 -~~~~~~E~l~~lp~~~~~--~~p~~~~~~~-~-~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~ 392 (619)
.-+...+++..+||+.-. |.|.+..... . -...++++.++|++++|+ .|..+.+++++++++++.|+.+|+|+
T Consensus 475 ~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIv 554 (694)
T PRK15179 475 DWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMV 554 (694)
T ss_pred HHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEE
Confidence 012334688889885321 2221111100 0 012245667789999987 69999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCcc
Q 007075 393 CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 471 (619)
Q Consensus 393 g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~ 471 (619)
|.| +.++.+++.++++|+. ++|+|+|.. .+...+|+.+|||+-|+.+ +.+++++|||+||+|||+....
T Consensus 555 G~G----~~~~~L~~l~~~lgL~-~~V~flG~~---~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g-- 624 (694)
T PRK15179 555 GGG----PLLESVREFAQRLGMG-ERILFTGLS---RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG-- 624 (694)
T ss_pred ccC----cchHHHHHHHHHcCCC-CcEEEcCCc---chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCC--
Confidence 987 5678899999999998 999999985 4677889999999999877 6699999999999999985432
Q ss_pred ccchhHHHHHhcCCCccccC--C--HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 472 AHNVGVSLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 472 ~~r~~~~~l~~~gl~~~v~~--~--~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
|..-+..-|..+++.. | .+++.+...+++.+......+++..+++.. ..|+++.++++++++|+
T Consensus 625 ----G~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 625 ----GAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ----ChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 2222222355565543 3 357777776766655555566777766654 34999999999999995
No 5
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.88 E-value=3.7e-20 Score=198.10 Aligned_cols=270 Identities=16% Similarity=0.125 Sum_probs=179.6
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecc---cCCCCCCCCCc----------cE--EEecCCCCCC
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI---GYPNTTGLPTI----------DY--RITDSLADPP 318 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~---G~p~ttg~~~~----------Dy--~i~d~~~~p~ 318 (619)
..++..||+.++||+--+..++ +..+.++.++|++.+... |++...+-..+ +. ..+| ++.-.
T Consensus 270 ~~l~~~ir~~rpDIVHt~~~~a--~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s 346 (578)
T PRK15490 270 KHLVPHLCERKLDYLSVWQDGA--CLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNN 346 (578)
T ss_pred HHHHHHHHHcCCCEEEEcCccc--HHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhcc
Confidence 4799999999999995443322 355666777776655322 23322111100 11 1122 22221
Q ss_pred Cc--c------CCCccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHH
Q 007075 319 ET--K------QKHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNNL--AKITPKVLQVWARILCA 383 (619)
Q Consensus 319 ~~--~------~~~~E~l~~lp~~~~~--~~p~~~~~-~~~~--~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~ 383 (619)
.. + ..-.+++..+||+... |.|....+ ..+. ..+++++.+++|+++++ .|....+++++.++++.
T Consensus 347 ~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~ 426 (578)
T PRK15490 347 HCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQH 426 (578)
T ss_pred HHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhH
Confidence 11 1 2335789999986432 33322111 0110 12344566789999987 79999999999999999
Q ss_pred CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCc
Q 007075 384 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 462 (619)
Q Consensus 384 ~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvP 462 (619)
.|+.+|+|+|.| +.++.+++.++++|+. ++|+|+|. ..+...+|..+|||+.|+.+ +.|++++|||+||+|
T Consensus 427 ~pdirLvIVGdG----~~~eeLk~la~elgL~-d~V~FlG~---~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlP 498 (578)
T PRK15490 427 HPATRFVLVGDG----DLRAEAQKRAEQLGIL-ERILFVGA---SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVP 498 (578)
T ss_pred CCCeEEEEEeCc----hhHHHHHHHHHHcCCC-CcEEECCC---hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCC
Confidence 999999999977 6788999999999998 99999998 35778889999999999977 669999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCCccccC--CHHHHH---HHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 463 CVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYV---QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 463 vVt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~---~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
||+..-. |..-+-.-|..+++.+ |.+++. ..+.++..+...+..++++.++++. ..|+++.++.+++
T Consensus 499 VVATdvG------G~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e~FS~e~Mv~~y~ 570 (578)
T PRK15490 499 VISTPAG------GSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--ERFTVEHMVGTFV 570 (578)
T ss_pred EEEeCCC------CcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCHHHHHHHHH
Confidence 9975432 1111222366666543 333333 3345555555555567777777654 4599999999999
Q ss_pred HHHHH
Q 007075 538 STYRN 542 (619)
Q Consensus 538 ~~y~~ 542 (619)
++|..
T Consensus 571 ki~~~ 575 (578)
T PRK15490 571 KTIAS 575 (578)
T ss_pred HHHHh
Confidence 99864
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=4e-19 Score=184.85 Aligned_cols=155 Identities=34% Similarity=0.564 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
|+|.+|+++|..+.|+..|++++++.|++++++.|||+.+.+.|+..+|+.+|.+++.++|+++++++|||++|..+|++
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
++|...|+++++..|....+++|||.+|.++|++++|+.+|++++++.|...+++.| ++..|-..|+.+.+.+.+
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N--mGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN--MGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh--cchHHHHhhhHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666555 444444455544444433
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.78 E-value=2.9e-17 Score=174.78 Aligned_cols=333 Identities=15% Similarity=0.118 Sum_probs=208.6
Q ss_pred cccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEcccC--C----HHHHHHHh
Q 007075 187 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 260 (619)
Q Consensus 187 rIgyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~~--~----~~~~~~~i 260 (619)
+|.++...+....+..++..+....+..++++.+.+.... +....++.. .+-.+..+... . -..+.+.|
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~l~~~l 77 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEV-SAFRKRIQR----PDVAFYALHKQPGKDVAVYPQLYRLL 77 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCC-ChhHHHHHh----cCceEEEeCCCCCCChHHHHHHHHHH
Confidence 4556666666566666677777777767787666654332 222222322 12233333221 1 24688889
Q ss_pred HhCCccEEEeCCCCCCCCcchhhccCCc--ceeE-ecccCCCCC--C------------CCCccEEEecCCCCCCCcc--
Q 007075 261 REDKIDILVELTGHTANNKLGMMACQPA--PVQV-TWIGYPNTT--G------------LPTIDYRITDSLADPPETK-- 321 (619)
Q Consensus 261 ~~d~~Dilvdl~g~t~~~r~~~~a~r~A--pvq~-~~~G~p~tt--g------------~~~~Dy~i~d~~~~p~~~~-- 321 (619)
++.++||+...+.+ .-...++.+.. |+-+ +..|+.... + .+.+|.+++-.-..-....
T Consensus 78 ~~~~~Divh~~~~~---~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~ 154 (374)
T TIGR03088 78 RQLRPDIVHTRNLA---ALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGP 154 (374)
T ss_pred HHhCCCEEEEcchh---HHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHh
Confidence 99999999432111 11111222222 2222 111111000 0 0234544431100000001
Q ss_pred -CCCccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCC----CceEEE
Q 007075 322 -QKHVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVV 391 (619)
Q Consensus 322 -~~~~E~l~~lp~~~~~--~~p~~~~~-~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P----~a~l~l 391 (619)
....+++..+|++... |.|..... ........+++.+++++++|+ .|..+.+++++.+++++.| +.+|++
T Consensus 155 ~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i 234 (374)
T TIGR03088 155 VKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVI 234 (374)
T ss_pred cCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEE
Confidence 1124567778875321 22221111 011112234667789999988 6999999999999998877 689999
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCc
Q 007075 392 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 470 (619)
Q Consensus 392 ~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~ 470 (619)
+|.| +.++.+++.+++.|+. ++|.|.|. ..+...+|..+|+++.|+.+ ++|.+++|||+||+|||+..-.
T Consensus 235 ~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~- 305 (374)
T TIGR03088 235 VGDG----PARGACEQMVRAAGLA-HLVWLPGE---RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVG- 305 (374)
T ss_pred ecCC----chHHHHHHHHHHcCCc-ceEEEcCC---cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCC-
Confidence 9976 5567889999999998 89999997 45788999999999998866 7799999999999999974422
Q ss_pred cccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 471 HAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 471 ~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
|..-+..-|..+++. .|++++++....+..|++.+..++++.|+.... .|+++.+++++++.|+++
T Consensus 306 -----g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 306 -----GNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred -----CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 111122224444443 689999999999999999999999988887543 599999999999999875
No 8
>PLN02949 transferase, transferring glycosyl groups
Probab=99.78 E-value=4.3e-17 Score=176.51 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=145.2
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHHH----CCCceEEEeccCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCccCc
Q 007075 357 FITFGSFNNL--AKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 428 (619)
Q Consensus 357 ~~~f~~~~~~--~K~~~~~~~~~~~il~~----~P~a~l~l~g~~~~--~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~ 428 (619)
..+|.++||+ .|.++.++++|++++++ .|+.+|+|+|++.. +....++|++.++++|++ ++|.|+|.++ .
T Consensus 268 ~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~-~ 345 (463)
T PLN02949 268 PPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVS-Y 345 (463)
T ss_pred CCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCC-H
Confidence 3467788877 79999999999998764 47899999997632 234567899999999998 9999999988 6
Q ss_pred HHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHh--cCCCccccCCHHHHHHHHHHhhc
Q 007075 429 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLIAKNEDEYVQLALQLAS 505 (619)
Q Consensus 429 ~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~--~gl~~~v~~~~~~y~~~a~~L~~ 505 (619)
++...+|+.+|++|.|+.+ ++|++++|||++|+|||+....... ..++.. .|..++++.|++++++...++++
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~----~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~ 421 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK----MDIVLDEDGQQTGFLATTVEEYADAILEVLR 421 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc----ceeeecCCCCcccccCCCHHHHHHHHHHHHh
Confidence 8899999999999988754 8899999999999999975421000 011111 14556777899999999999998
Q ss_pred -CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 007075 506 -DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 546 (619)
Q Consensus 506 -d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~ 546 (619)
+++.+++++++.|++.. .|+++.|++++++.|+.+++.
T Consensus 422 ~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 422 MRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHhh
Confidence 57888899999888752 399999999999999988753
No 9
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.75 E-value=1.6e-16 Score=170.62 Aligned_cols=270 Identities=16% Similarity=0.135 Sum_probs=184.6
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCC--cceeEecccC---CCCC----------CCCCccEEEecCC--CC
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIGY---PNTT----------GLPTIDYRITDSL--AD 316 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G~---p~tt----------g~~~~Dy~i~d~~--~~ 316 (619)
..+.+.+...++||+.--+.+....-...++.|. .|+-.+..+. .... .....|.+++-.- .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 4566778888999996543332211123333343 3443333331 1111 0234566654221 10
Q ss_pred CC-CccCCCccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEE
Q 007075 317 PP-ETKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 391 (619)
Q Consensus 317 p~-~~~~~~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l 391 (619)
.. .......+++..+|++... |.|.... .+++.+++++++++ .|....+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 00 0112235678889975421 2222110 23566789999988 6999999999999988999999999
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCc
Q 007075 392 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 470 (619)
Q Consensus 392 ~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~ 470 (619)
+|.+ +..+.+++.+++.|++ ++|+|.|+++ .++...+|..+|+++-|+.+ +.|.+++|||+||+|||+.....
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg 303 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG 303 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC
Confidence 9976 5677889999999998 8999999997 68999999999999998866 77999999999999999755321
Q ss_pred cccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 471 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 471 ~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
.. .++.. |-..++..|.+++++...+++.++.....+++..+++.. ..|+++.+++++.++|+++..
T Consensus 304 ~~-----e~i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 304 IP-----EVLPP-DMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVK--KMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred ch-----hheeC-CceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHH--hhCCHHHHHHHHHHHHHHHhc
Confidence 11 12221 223345568999999999999987766666677776544 459999999999999999864
No 10
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.73 E-value=8.1e-16 Score=163.61 Aligned_cols=336 Identities=10% Similarity=0.006 Sum_probs=207.5
Q ss_pred cccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhh--HHHHHHHhhhCCeEEEcccCCHHH---H----H
Q 007075 187 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 257 (619)
Q Consensus 187 rIgyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t--~~~r~~~~~~~~~~~~~~~~~~~~---~----~ 257 (619)
+|.+++..+....+......+....+..+.++.++......+... .++.. .. .+.. . .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~-~g~~-~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHN-AL-QGAD-I---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhH-hh-cCCC-C---CCCHHHHHHHHHHHH
Confidence 356666667778888888888888887888888776644332111 11111 11 0111 1 222211 1 1
Q ss_pred HH----hHhCCccEEEeCCCCCCCCcchhhccC-CcceeEecccCCCCC----------CCCCccEEEecCCCCCCCccC
Q 007075 258 AM----VREDKIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETKQ 322 (619)
Q Consensus 258 ~~----i~~d~~Dilvdl~g~t~~~r~~~~a~r-~Apvq~~~~G~p~tt----------g~~~~Dy~i~d~~~~p~~~~~ 322 (619)
.. +...++||+.--+.+. .-+..+..+ ..|+-+.+-+...+. .+...|.+++-. +.....
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~~--~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~ 149 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQP--LALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPP 149 (372)
T ss_pred HHhccccccCCCCEEEECCCCc--hhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCC
Confidence 11 2356899997422221 111112222 345433332211110 112345554321 111223
Q ss_pred CCccceEEcCCCccccCCCC--CCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEecc
Q 007075 323 KHVEELIRLPECFLCYTPSP--EAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 394 (619)
Q Consensus 323 ~~~E~l~~lp~~~~~~~p~~--~~~----~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~ 394 (619)
.+..+.+.+|+......+.. ..+ ..+...+++++..+++.++|+ .|..+.+++++..+.++.|+.+|+++|.
T Consensus 150 ~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~ 229 (372)
T cd03792 150 QVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGS 229 (372)
T ss_pred CCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 33333347887532211110 000 011224566677789999998 6999999999999988889999999997
Q ss_pred CCCCHH-HHHHHHHHHHHcCCCCCcEEEcCCcc-CcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCcc
Q 007075 395 PFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 471 (619)
Q Consensus 395 ~~~~~~-~~~~l~~~~~~~Gi~~~rv~f~g~~~-~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~ 471 (619)
+...++ ..+.+++..+..++. ++|.|.|..+ ...+...+|+.+|+|+.|+.+ ++|.+++|||+||+|||+......
T Consensus 230 g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~ 308 (372)
T cd03792 230 GATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGI 308 (372)
T ss_pred CCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCc
Confidence 743222 223344444467887 8899998863 357888999999999999877 679999999999999998543211
Q ss_pred ccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 472 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 472 ~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
..++ .-|..++++++.++....+.++..|++.++++++..++... ..|+++.+++++.+.|+.
T Consensus 309 -----~~~i-~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~--~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 309 -----PLQI-EDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVR--ENFLITRHLKDYLYLISK 371 (372)
T ss_pred -----hhhc-ccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHh
Confidence 1222 23566677888888998889999999999999999888654 349999999999999986
No 11
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.73 E-value=1.5e-16 Score=170.66 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=156.8
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHH
Q 007075 325 VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 400 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~ 400 (619)
.+++..+|++... |.+.+ . ...++.+++++++|+ .|..+.+++++..+.++.|+.+|+++|.| +
T Consensus 196 ~~ki~vi~nGvd~~~f~~~~-----~---~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~ 263 (406)
T PRK15427 196 PEKIAVSRMGVDMTRFSPRP-----V---KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----P 263 (406)
T ss_pred HHHEEEcCCCCCHHHcCCCc-----c---ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----h
Confidence 5778888875321 22211 0 112345678888988 69999999999999888999999999977 6
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC-------CCCchhHHHhhhcCCcEEeccCCcccc
Q 007075 401 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAH 473 (619)
Q Consensus 401 ~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~-------~~g~~t~~eAl~~GvPvVt~~g~~~~~ 473 (619)
.++.+++.++++|++ ++|.|.|+++ ..+...+|+.+|+|+-|+. .+.+++++|||+||+|||+....
T Consensus 264 ~~~~l~~~~~~~~l~-~~V~~~G~~~-~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~---- 337 (406)
T PRK15427 264 WERRLRTLIEQYQLE-DVVEMPGFKP-SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS---- 337 (406)
T ss_pred hHHHHHHHHHHcCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----
Confidence 788999999999998 9999999998 6899999999999999885 46789999999999999985432
Q ss_pred chhHHHHHhcCCCcccc--CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 474 NVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 474 r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
|..-+-.-|..+++. .|.+++++.+.+|+. |++.+++++++.|++... .|+++.+++++++.|++
T Consensus 338 --g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~--~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 338 --GIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVET--DFNQQVINRELASLLQA 405 (406)
T ss_pred --CchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhh
Confidence 111222225555554 589999999999999 999999999999987654 49999999999999976
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.72 E-value=4e-16 Score=170.82 Aligned_cols=344 Identities=12% Similarity=0.064 Sum_probs=204.6
Q ss_pred CCCccccccCCC-C--ccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHH-HHhh-hCCeEEEc-ccC-CHHH
Q 007075 183 ERPLVIGYVSPD-Y--FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMK-KGGIWRDI-YGI-DEKK 255 (619)
Q Consensus 183 ~~~LrIgyvs~~-~--~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~-~~~~-~~~~~~~~-~~~-~~~~ 255 (619)
.+++||..+... . ....+......+...+.....|+.+.+............+- .+.. ....+... ..+ -...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPR 135 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHH
Confidence 567888876421 1 22344445555555666667888877754322110000000 0000 00000000 000 1136
Q ss_pred HHHHhHhCCccEEEeCCCCCCCCcchhhcc--CCcceeEecccCCCCC----C---------------CCCccEEEecCC
Q 007075 256 VAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT----G---------------LPTIDYRITDSL 314 (619)
Q Consensus 256 ~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~--r~Apvq~~~~G~p~tt----g---------------~~~~Dy~i~d~~ 314 (619)
+.+.|++.++||+..-+... .....++.. .-.|+-+++-++.... + ....|.+++..-
T Consensus 136 l~~~i~~~kpDiIh~~~~~~-~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~ 214 (465)
T PLN02871 136 IISEVARFKPDLIHASSPGI-MVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP 214 (465)
T ss_pred HHHHHHhCCCCEEEECCCch-hHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 88899999999986432111 111122222 2346666555432110 0 012455544220
Q ss_pred CCCCCccCCC---ccceEEcCCCccc--cCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC
Q 007075 315 ADPPETKQKH---VEELIRLPECFLC--YTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN 386 (619)
Q Consensus 315 ~~p~~~~~~~---~E~l~~lp~~~~~--~~p~~~~~~~~~-~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~ 386 (619)
..-......+ .+++..+|++... |.|.......+. .....++.++++.++++ .|+. +.+.+++++.|+
T Consensus 215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~----~~li~a~~~~~~ 290 (465)
T PLN02871 215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL----DFLKRVMERLPG 290 (465)
T ss_pred HHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH----HHHHHHHHhCCC
Confidence 0000011222 5677888875432 333221111111 11122355678888988 4554 445556677899
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEe
Q 007075 387 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 465 (619)
Q Consensus 387 a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt 465 (619)
.+|+|+|+| +.++.+++.++. .+|+|+|.++ .++...+|+.+|||+.|+.+ +.|.+++|||+||+|||+
T Consensus 291 ~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 291 ARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred cEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEE
Confidence 999999976 666777766542 4799999988 58999999999999999876 679999999999999997
Q ss_pred ccCCccccchhHHHHHh--cCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-HH
Q 007075 466 MAGSVHAHNVGVSLLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES-TY 540 (619)
Q Consensus 466 ~~g~~~~~r~~~~~l~~--~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~-~y 540 (619)
..... ...++.. .|..+++. .|++++++.+.++++|++.++++++..++... .|+++.+++++++ .|
T Consensus 361 s~~gg-----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~~~Y 432 (465)
T PLN02871 361 ARAGG-----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRNEQY 432 (465)
T ss_pred cCCCC-----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Confidence 54321 1123332 14555553 58999999999999999999999999988653 4999999999998 79
Q ss_pred HHHHHHHhc
Q 007075 541 RNMWHRYCK 549 (619)
Q Consensus 541 ~~~~~~~~~ 549 (619)
++++.+|.+
T Consensus 433 ~~~~~~~~~ 441 (465)
T PLN02871 433 SAAIWFWRK 441 (465)
T ss_pred HHHHHHHHH
Confidence 999988765
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=1e-15 Score=143.37 Aligned_cols=161 Identities=25% Similarity=0.266 Sum_probs=147.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
..||..|++.|++..|..-+++|++.+|++..+|..+|.+|...|+.+.|.+.|++|++++|++.++++|.|..++.+|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 82 MDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 82 ~~eA~~~~~~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
+++|...|++|+.. .+.....+.|+|.|-.+.|+.+.|..+|+++++++|+++..... ++..++..|++..+...+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~--~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE--LARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH--HHHHHHhcccchHHHHHH
Confidence 99999999999875 45567899999999999999999999999999999999877655 788888889888777666
Q ss_pred HHHHH
Q 007075 160 RDWGK 164 (619)
Q Consensus 160 ~~~~~ 164 (619)
+.+..
T Consensus 197 ~~~~~ 201 (250)
T COG3063 197 ERYQQ 201 (250)
T ss_pred HHHHh
Confidence 65543
No 14
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.70 E-value=1.2e-15 Score=158.37 Aligned_cols=318 Identities=15% Similarity=0.153 Sum_probs=199.1
Q ss_pred ccccCCCCc-cChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEc----------ccCCHHHH
Q 007075 188 IGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKKV 256 (619)
Q Consensus 188 Igyvs~~~~-~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~----------~~~~~~~~ 256 (619)
|.++...+. ...+......+...+...++++.+++....... ...... ...+..+ .-.....+
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDP-----KIKVIDLGDKRDSKLLARFKKLRRL 75 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCC-----ccceeecccccccchhccccchHHH
Confidence 444544444 444445455555555556788887766543200 000000 0111111 11234678
Q ss_pred HHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCC------------CCCccEEEecCCCCCCCccCCC
Q 007075 257 AAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQKH 324 (619)
Q Consensus 257 ~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg------------~~~~Dy~i~d~~~~p~~~~~~~ 324 (619)
.+.|+..++|+++...++ ....+..+..+..|+-+..-+.+.... ++..|.+++..-..-......+
T Consensus 76 ~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 154 (348)
T cd03820 76 RKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKF 154 (348)
T ss_pred HHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccC
Confidence 889999999999987655 111222222222233222222221111 3456777663311111122345
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHH
Q 007075 325 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 402 (619)
Q Consensus 325 ~E~l~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~ 402 (619)
..++..+|+... .... ... .+++..+|++++++ .|..+.+++++.++.+..|+.+|+++|.+ +..
T Consensus 155 ~~~~~vi~~~~~-~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~ 221 (348)
T cd03820 155 NKNVVVIPNPLP-FPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PER 221 (348)
T ss_pred CCCeEEecCCcC-hhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CCH
Confidence 577788886431 1111 000 23445567777766 78999999999999988999999999976 345
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHH
Q 007075 403 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 481 (619)
Q Consensus 403 ~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~ 481 (619)
..+.+.+.+.|+. ++|.|.|. ..+...+|..+|+++.|+.+ +.|++++|||++|+|||+..... +...+.
T Consensus 222 ~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~-----~~~~~~ 292 (348)
T cd03820 222 EALEALIKELGLE-DRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPT-----GPSEII 292 (348)
T ss_pred HHHHHHHHHcCCC-CeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCC-----chHhhh
Confidence 6677778889998 89999998 46888999999999999977 66999999999999999864321 112222
Q ss_pred hcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 482 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 482 ~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
.-+..+++. .|.+++++.+.+++.|++.++++++..++.. ..|+++.++++++
T Consensus 293 ~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 347 (348)
T cd03820 293 EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA---ERFSIENIIKQWE 347 (348)
T ss_pred ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHhCHHHHHHHhc
Confidence 223344444 4679999999999999999999999886543 2389999888775
No 15
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.69 E-value=9.3e-16 Score=165.02 Aligned_cols=208 Identities=15% Similarity=0.135 Sum_probs=160.1
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC--ceEEEeccCCCC
Q 007075 325 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 398 (619)
Q Consensus 325 ~E~l~~lp~~~~--~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~--a~l~l~g~~~~~ 398 (619)
.+++..+|++.. .|.|.. ....+...+++++.++|++++++ .|..+.+++++.+++++.|+ .+|+++|.+..+
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 467888887532 133321 11112233455667789999988 69999999999999999998 899999865333
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 399 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 399 ~-~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
. +..+.+++.+++.|+. ++|+|+|.++ .++...+|+.+|+++-|+.. ++|++++|||++|+|||+......
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~----- 337 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGL----- 337 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCc-----
Confidence 3 5677899999999998 8999999987 68999999999999988865 779999999999999998553211
Q ss_pred HHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 477 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 477 ~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
..++. -|-.++++ .|.+++++...++.+|++.++++++..++.. ..|+++.++++++++|.++.
T Consensus 338 ~e~i~-~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 338 PVAVA-DGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA---AGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred Hhhhc-cCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHh
Confidence 11222 24445554 4899999999999999999999999888753 24999999999999999875
No 16
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.69 E-value=1.9e-15 Score=159.06 Aligned_cols=334 Identities=16% Similarity=0.081 Sum_probs=203.7
Q ss_pred cccccCCCCc-cChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEc-ccCCHHHHHHHhHhCC
Q 007075 187 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI-YGIDEKKVAAMVREDK 264 (619)
Q Consensus 187 rIgyvs~~~~-~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~-~~~~~~~~~~~i~~d~ 264 (619)
+|+++++... ...+..+...+...+.....++.++........... .... ........ .......+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 3566665443 455666666676666666666666554322111000 0000 00111111 1223467888899999
Q ss_pred ccEEEeCCCC--CCCCcchhhc----cCCcceeEecccC-CCCC----------CCCCccEEEecCCCCCCCc----cCC
Q 007075 265 IDILVELTGH--TANNKLGMMA----CQPAPVQVTWIGY-PNTT----------GLPTIDYRITDSLADPPET----KQK 323 (619)
Q Consensus 265 ~Dilvdl~g~--t~~~r~~~~a----~r~Apvq~~~~G~-p~tt----------g~~~~Dy~i~d~~~~p~~~----~~~ 323 (619)
+||++-...+ ........+. .+..|+-+...++ +... -+...|.+++.. .... ...
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~~~ 153 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLLRA 153 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHhhc
Confidence 9999864321 1111111111 1445665555454 1111 012346665532 0111 122
Q ss_pred CccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHH
Q 007075 324 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 401 (619)
Q Consensus 324 ~~E~l~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~ 401 (619)
+.+++..+|+......... ...........+..++++++++ .|....+++++.++.++.|+.+|+++|.+......
T Consensus 154 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~ 231 (366)
T cd03822 154 YPEKIAVIPHGVPDPPAEP--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLER 231 (366)
T ss_pred CCCcEEEeCCCCcCcccCC--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhh
Confidence 3578888987532111110 0000111234455678888877 68899999999999999999999999976322111
Q ss_pred -HHHHHHHHHHcCCCCCcEEEcCC-ccCcHHHHHhcccCcEeecCCCCC---CchhHHHhhhcCCcEEeccCCccccchh
Q 007075 402 -RHRFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 402 -~~~l~~~~~~~Gi~~~rv~f~g~-~~~~~~~~~~~~~~Dv~Ldt~~~~---g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
.....+++++.|+. ++|+|.|. ++ .++...+|+.+|+++.|+.+. .+.+++|||++|+|||+.....
T Consensus 232 ~~~~~~~~i~~~~~~-~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~------ 303 (366)
T cd03822 232 YRGEAYALAERLGLA-DRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH------ 303 (366)
T ss_pred hhhhhHhHHHhcCCC-CcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC------
Confidence 11111347788998 89999987 76 689999999999999998655 4789999999999999855321
Q ss_pred HHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 477 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 477 ~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
...+.. +..+++. .|.+++++.+..+.+|++.+.++++..+.... . |+++.+++++.++|+
T Consensus 304 ~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 304 AEEVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred hheeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 111211 3334443 57999999999999999999999998887643 3 999999999998874
No 17
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.68 E-value=1.3e-15 Score=159.00 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=188.1
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCC------------------CCCCccEEEecCCC
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT------------------GLPTIDYRITDSLA 315 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~tt------------------g~~~~Dy~i~d~~~ 315 (619)
..+...++..++||++....+...........+-.|+-+...+..... .+...|++++-.-.
T Consensus 75 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~ 154 (374)
T cd03801 75 LRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEA 154 (374)
T ss_pred HHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHH
Confidence 467788889999999887666543322122234446655555532211 12345666653211
Q ss_pred CCCCccCCCc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceE
Q 007075 316 DPPETKQKHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 389 (619)
Q Consensus 316 ~p~~~~~~~~---E~l~~lp~~~~~~~p~~~~-~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l 389 (619)
.-......+. +++..+|+.... ...... ...........+.++++.+++. .|....+++++..+....|+.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l 233 (374)
T cd03801 155 TREELRELGGVPPEKITVIPNGVDT-ERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRL 233 (374)
T ss_pred HHHHHHhcCCCCCCcEEEecCcccc-cccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEE
Confidence 1112223333 478888864321 110000 0001223334556778888876 79999999999999999999999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccC
Q 007075 390 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 390 ~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g 468 (619)
++.|.+ .....+.+.+.+.+.. ++|.|.|.++ ..++...|..+|+++.|+.+ ++|++++|||++|+|||+...
T Consensus 234 ~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 234 VIVGDG----PLREELEALAAELGLG-DRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred EEEeCc----HHHHHHHHHHHHhCCC-cceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCC
Confidence 999965 6677788888888887 8999999997 68999999999999999977 668999999999999998775
Q ss_pred CccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 469 SVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 469 ~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
..+. .++.. +..+++. .|++++++.+.++..|++.+.++++..++.... .|+++.+++++.++|+
T Consensus 308 ~~~~-----~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 308 GGIP-----EVVED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAE--RFSWDRVAARTEEVYY 374 (374)
T ss_pred CChh-----HHhcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHhhC
Confidence 3222 22222 3334444 347999999999999999999999988865543 4899999999998873
No 18
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.68 E-value=6.3e-15 Score=154.20 Aligned_cols=329 Identities=16% Similarity=0.110 Sum_probs=204.2
Q ss_pred ccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEcccC-------CHHHHHHHh
Q 007075 188 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEKKVAAMV 260 (619)
Q Consensus 188 Igyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~i 260 (619)
|.++...+...........+.......++++.+++.....+ ....+.. .+-....+... ....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEE----AGVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHh----cCCeEEEEecccccccHHHHHHHHHHH
Confidence 34444444445566666667667766677777766543222 1112221 11112222111 124678889
Q ss_pred HhCCccEEEeCCCCCCCCcchhhcc---CCcceeEecccCCCCC--------------CCCCccEEEecCCCCCCC--cc
Q 007075 261 REDKIDILVELTGHTANNKLGMMAC---QPAPVQVTWIGYPNTT--------------GLPTIDYRITDSLADPPE--TK 321 (619)
Q Consensus 261 ~~d~~Dilvdl~g~t~~~r~~~~a~---r~Apvq~~~~G~p~tt--------------g~~~~Dy~i~d~~~~p~~--~~ 321 (619)
+..++||++....++. ....+.. +-.|+-.+..+..... -....|.+++..-..-.. ..
T Consensus 77 ~~~~~div~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 154 (365)
T cd03807 77 RRLRPDVVHTWMYHAD--LYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAI 154 (365)
T ss_pred HhhCCCEEEecccccc--HHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHc
Confidence 9999999987655542 2211111 2334444433432221 012234433211000000 01
Q ss_pred CCCccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCC
Q 007075 322 QKHVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPF 396 (619)
Q Consensus 322 ~~~~E~l~~lp~~~~~--~~p~~~~~-~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~ 396 (619)
....+++..+|++... +.+..... ..+...+++++.++|+.++++ .|..+.+++++..+....|+.+|+++|.+.
T Consensus 155 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~ 234 (365)
T cd03807 155 GYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP 234 (365)
T ss_pred CCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 2335677778874321 11211110 111234456777888898987 689999999999999999999999999763
Q ss_pred CCHHHHHHHHHHHH-HcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccc
Q 007075 397 CCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN 474 (619)
Q Consensus 397 ~~~~~~~~l~~~~~-~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r 474 (619)
....+..... +.|+. ++|.|.|.. .+...+|+.+|+++-|+.+ ++|++++|||+||+|||+.....
T Consensus 235 ----~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~---- 302 (365)
T cd03807 235 ----DRANLELLALKELGLE-DKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD---- 302 (365)
T ss_pred ----chhHHHHHHHHhcCCC-ceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----
Confidence 2334444444 78887 899999963 5678899999999999977 77999999999999999855331
Q ss_pred hhHHHHHhcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 475 VGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 475 ~~~~~l~~~gl~~~v--~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
...++.. .+++ ..|.+++++.+..+..|++.+.++++..++... ..|+++.++++++++|+
T Consensus 303 -~~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 303 -NAELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIE--ENFSIEAMVEAYEELYR 365 (365)
T ss_pred -hHHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 1222332 2333 368999999999999999999999988887655 34999999999999884
No 19
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.68 E-value=9.9e-16 Score=165.12 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=129.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC-----ceEEEeccCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 425 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~-----a~l~l~g~~~~--~~~~~~~l~~~~~~~Gi~~~rv~f~g~~ 425 (619)
++..+|.+++|+ .|.+..+++++..+.++.|+ .+|+|+|++.. +....+.|++.++++|++ ++|+|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCC
Confidence 445678888877 69999999999999988775 89999997642 234678889999999998 999999998
Q ss_pred cCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccC-CccccchhHHHHH--hcCCCccccCCHHHHHHHHH
Q 007075 426 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLT--KVGLKHLIAKNEDEYVQLAL 501 (619)
Q Consensus 426 ~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g-~~~~~r~~~~~l~--~~gl~~~v~~~~~~y~~~a~ 501 (619)
+ .++...+|+.+|++|-|+.. ++|.+++|||+||+|||+... ... ..++. .-|-.++++.|++++++.+.
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~-----~~iv~~~~~g~~G~l~~d~~~la~ai~ 387 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL-----LDIVVPWDGGPTGFLASTAEEYAEAIE 387 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc-----hheeeccCCCCceEEeCCHHHHHHHHH
Confidence 7 68999999999999998865 889999999999999997542 111 01111 02556677789999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 007075 502 QLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 534 (619)
Q Consensus 502 ~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~ 534 (619)
+++++++...+...+.+.+. ...|+.+.|.+
T Consensus 388 ~ll~~~~~~~~~~~~~~~~~--~~~fs~~~f~~ 418 (419)
T cd03806 388 KILSLSEEERLRIRRAARSS--VKRFSDEEFER 418 (419)
T ss_pred HHHhCCHHHHHHHHHHHHHH--HHhhCHHHhcc
Confidence 99997654433333333333 24488888754
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.68 E-value=2.6e-15 Score=170.19 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=152.0
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
++.+|.++..+|++++|+..|+++++.+|.+..++.++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++..|+++.++.+ ++.++...|+++++.+.++
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~--lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY--YGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888776 7788889999998888776
Q ss_pred HHHH
Q 007075 161 DWGK 164 (619)
Q Consensus 161 ~~~~ 164 (619)
...+
T Consensus 492 ~Al~ 495 (615)
T TIGR00990 492 TAIE 495 (615)
T ss_pred HHHh
Confidence 6543
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.3e-16 Score=167.25 Aligned_cols=162 Identities=22% Similarity=0.327 Sum_probs=153.7
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
|..+|++|.-+++++.|+++|++|++++|.++.+|..+|.-+....++|+|..+|++|+..+|.+..+|+.+|.+|.+++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
+++.|.-+|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+. .+.++...+++++++..++
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~--~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH--RASILFSLGRYVEALQELE 581 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH--HHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877 6677788899999988887
Q ss_pred HHHH
Q 007075 161 DWGK 164 (619)
Q Consensus 161 ~~~~ 164 (619)
+.-+
T Consensus 582 eLk~ 585 (638)
T KOG1126|consen 582 ELKE 585 (638)
T ss_pred HHHH
Confidence 6543
No 22
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.67 E-value=6.3e-15 Score=154.78 Aligned_cols=202 Identities=16% Similarity=0.111 Sum_probs=152.0
Q ss_pred CCccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCC
Q 007075 323 KHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 398 (619)
Q Consensus 323 ~~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~ 398 (619)
.+.+++..+|++... +.+.... ..+.....+++.++|++++++ .|..+.+++++.++.++.|+.+|+++|.+ .
T Consensus 168 ~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~--~ 244 (375)
T cd03821 168 GLKAPIAVIPNGVDIPPFAALPSR-GRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPD--E 244 (375)
T ss_pred CCcccEEEcCCCcChhccCcchhh-hhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCC--C
Confidence 356778888875321 1111100 001223456677789999987 69999999999999999999999999975 2
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhH
Q 007075 399 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV 477 (619)
Q Consensus 399 ~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~ 477 (619)
+.....++..+.+.|+. ++|+|.|.++ ..+...+|..+|+++.|+.+ +.|++++|||+||+|||+...... .
T Consensus 245 ~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~-----~ 317 (375)
T cd03821 245 GGYRAELKQIAAALGLE-DRVTFTGMLY-GEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPW-----Q 317 (375)
T ss_pred cchHHHHHHHHHhcCcc-ceEEEcCCCC-hHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCH-----H
Confidence 23445555556888998 8999999998 57899999999999999875 779999999999999998664321 2
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 478 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 478 ~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
.++.. +..-++..+++++++.+.++..|++.++.+++..++... ..|+++.++++++
T Consensus 318 ~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~ 374 (375)
T cd03821 318 ELIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVE--ERFSWTAIAQQLL 374 (375)
T ss_pred HHhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhcCHHHHHHHhh
Confidence 23333 444445567799999999999999999999998887654 3489999998875
No 23
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.67 E-value=1.9e-15 Score=160.27 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=178.9
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccC-----CcceeEecccCCC-C------------CCCCCccEEEecCCC
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ-----PAPVQVTWIGYPN-T------------TGLPTIDYRITDSLA 315 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r-----~Apvq~~~~G~p~-t------------tg~~~~Dy~i~d~~~ 315 (619)
..+.+.|++.++||+.-..... ......++.+ --|+-.+..|... . ..+...|++++..-.
T Consensus 74 ~~l~~~i~~~~~divh~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 74 SKIAEVAKRYKLDLLHVHYAVP-HAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHHHHHhcCCccEEeecccCC-ccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHH
Confidence 4677888999999986422111 1112222222 2355545444211 0 011334665542210
Q ss_pred CCCCccCC--CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceE
Q 007075 316 DPPETKQK--HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 389 (619)
Q Consensus 316 ~p~~~~~~--~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l 389 (619)
.-...... ..+++..+|+..-. |.+... .......+++++..++++++++ .|....++++|.++..+ ++.+|
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l 230 (371)
T cd04962 153 LRQETYELFDITKEIEVIPNFVDEDRFRPKPD-EALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARL 230 (371)
T ss_pred HHHHHHHhcCCcCCEEEecCCcCHhhcCCCch-HHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceE
Confidence 00001122 34678888874321 111111 1111223455667778888887 69999999999988665 66899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccC
Q 007075 390 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 390 ~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g 468 (619)
+++|.+ +..+.+++.+++.|+. ++|.|.|.. .+...+|..+|+++-|+.+ ++|.+++|||++|+|||+...
T Consensus 231 ~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~ 302 (371)
T cd04962 231 LLVGDG----PERSPAERLARELGLQ-DDVLFLGKQ---DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNA 302 (371)
T ss_pred EEEcCC----cCHHHHHHHHHHcCCC-ceEEEecCc---ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCC
Confidence 999976 3456788888899998 899999974 4677889999999999976 779999999999999998554
Q ss_pred CccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 469 SVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 469 ~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
... ..++. -|..+++. .|.+++++.+.+++.|++.+..++++.++... ..|+++.++.++++.|+++
T Consensus 303 ~~~-----~e~i~-~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 303 GGI-----PEVVK-HGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAA--ERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCc-----hhhhc-CCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhC
Confidence 311 11222 24445554 48899999999999999999999999888644 3499999999999999863
No 24
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.67 E-value=1.1e-15 Score=161.71 Aligned_cols=259 Identities=19% Similarity=0.119 Sum_probs=174.1
Q ss_pred HHHHHhHhCCccEEEeCCCCCCCCcchhhcc-CCcceeEecccCCCCCCC-------------------CCccEEEecCC
Q 007075 255 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGL-------------------PTIDYRITDSL 314 (619)
Q Consensus 255 ~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~-r~Apvq~~~~G~p~ttg~-------------------~~~Dy~i~d~~ 314 (619)
.+...+++.++||+..-.++... .....+. .-.|+-+++.|+..+... ...|.+++-.-
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~-~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 151 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGV-YALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQ 151 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHH-HHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCH
Confidence 45557899999999764433221 1111112 235766665553222111 12355544110
Q ss_pred CCCCCc--cCCCccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCce
Q 007075 315 ADPPET--KQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 388 (619)
Q Consensus 315 ~~p~~~--~~~~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~ 388 (619)
..-... .+...+++..+|++... |.|. ....+..++++++++ .|..+.+++++..+.++.|+.+
T Consensus 152 ~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~----------~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~ 221 (367)
T cd05844 152 FIRDRLLALGFPPEKVHVHPIGVDTAKFTPA----------TPARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVR 221 (367)
T ss_pred HHHHHHHHcCCCHHHeEEecCCCCHHhcCCC----------CCCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeE
Confidence 000000 02234677788864211 1111 011233456666766 7999999999999999999999
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC-------CCCchhHHHhhhcCC
Q 007075 389 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-------YAGTTTTCESLYMGV 461 (619)
Q Consensus 389 l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~-------~~g~~t~~eAl~~Gv 461 (619)
|+++|.+ +..+.+++.+++.|+. ++|+|.|.++ .++...+|..+|+++.|+. .+.|++++|||++|+
T Consensus 222 l~ivG~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~ 295 (367)
T cd05844 222 LVIIGDG----PLLAALEALARALGLG-GRVTFLGAQP-HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV 295 (367)
T ss_pred EEEEeCc----hHHHHHHHHHHHcCCC-CeEEECCCCC-HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC
Confidence 9999976 5677888889999998 8999999987 6889999999999998874 367999999999999
Q ss_pred cEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 007075 462 PCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 538 (619)
Q Consensus 462 PvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~ 538 (619)
|||+........ ++.. |-.+++. .|++++++...+++.|++.+++++...++... ..|+++.+++++++
T Consensus 296 PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~--~~~s~~~~~~~l~~ 366 (367)
T cd05844 296 PVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVE--ERFDLRRQTAKLEA 366 (367)
T ss_pred CEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHhc
Confidence 999855432111 1221 2233443 58999999999999999999999988887654 34999999998875
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=3.2e-15 Score=136.31 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 17 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 96 (619)
Q Consensus 17 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 96 (619)
-..+|+++++++|++ ++.+|.++...|++++|+.+|++++.++|.+..++.++|.++...|++++|+..|+++++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 357899999999985 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 97 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 146 (619)
Q Consensus 97 p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~ 146 (619)
|+++.+++++|.++..+|++++|+..|+++++++|+++..+.++..+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876555544
No 26
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.66 E-value=7.4e-15 Score=154.71 Aligned_cols=314 Identities=15% Similarity=0.133 Sum_probs=190.9
Q ss_pred ccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEcccC--C----HHHHHHHhH
Q 007075 188 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMVR 261 (619)
Q Consensus 188 Igyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~~--~----~~~~~~~i~ 261 (619)
|.++...+....+..+...+...+....+++.+++...........+.. .+..+..+... . ...+.+.++
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLIK 77 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHHh
Confidence 4455555555556666666766776678888877765433222222221 12222222211 1 135667788
Q ss_pred hCCccEEEeCCCCCCCCcchhhcc-CCcceeEe-cccCCCCCCCCC--c--------cEEEecCCCCCCCc--cC----C
Q 007075 262 EDKIDILVELTGHTANNKLGMMAC-QPAPVQVT-WIGYPNTTGLPT--I--------DYRITDSLADPPET--KQ----K 323 (619)
Q Consensus 262 ~d~~Dilvdl~g~t~~~r~~~~a~-r~Apvq~~-~~G~p~ttg~~~--~--------Dy~i~d~~~~p~~~--~~----~ 323 (619)
..++||++....+.. .-..+++. ...|+-+. ..+...+..... . -+..+|.++.+... +. .
T Consensus 78 ~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 156 (358)
T cd03812 78 KNKYDIVHVHGSSAS-GFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKV 156 (358)
T ss_pred cCCCCEEEEeCcchh-HHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCC
Confidence 999999976544321 11222222 23344332 222111111000 0 00111222222221 11 2
Q ss_pred CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH
Q 007075 324 HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 399 (619)
Q Consensus 324 ~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~ 399 (619)
..+++..+|+.... |.+..............++.++++.++++ .|..+.+++++..+.+..|+.+++++|.+
T Consensus 157 ~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g---- 232 (358)
T cd03812 157 KNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG---- 232 (358)
T ss_pred CcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC----
Confidence 24677788875321 22211111111123355677889999988 79999999999999999999999999976
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHH
Q 007075 400 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478 (619)
Q Consensus 400 ~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~ 478 (619)
+....+++.+++.|+. ++|+|.|. ..+...+|+.||+++-|+.+ +.|++++|||++|+|||+..... ...
T Consensus 233 ~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~-----~~~ 303 (358)
T cd03812 233 ELEEEIKKKVKELGLE-DKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT-----KEV 303 (358)
T ss_pred chHHHHHHHHHhcCCC-CcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc-----hhh
Confidence 5567788888899998 99999998 35678899999999999976 77999999999999999865431 122
Q ss_pred HHHhcCCCcccc-CCHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 479 LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 479 ~l~~~gl~~~v~-~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
++.. +...++. ++++++++...++..|++.++.++...+..
T Consensus 304 ~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~ 345 (358)
T cd03812 304 DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKG 345 (358)
T ss_pred hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhcc
Confidence 3333 3344444 456999999999999999888776665543
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.65 E-value=3.7e-15 Score=159.96 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=144.3
Q ss_pred CCccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC-C--CcCCHHHHHHHHHHHHHCCCceEEEeccCC
Q 007075 323 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN-L--AKITPKVLQVWARILCAVPNSRLVVKCKPF 396 (619)
Q Consensus 323 ~~~E~l~~lp~~~~~--~~p~~~~~~-~~~~~~l~~~~~~f~~~~~-~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~ 396 (619)
.+.+++..+|++... |.|.+.... ......+..+..+++.++| + .|..+.+++++.++.++.|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345788889975432 333222111 1111223455666777776 4 799999999999999999999999999631
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCC-CCCCchhHHHhhhcCCcEEecc
Q 007075 397 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 467 (619)
Q Consensus 397 ~--------~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~-~~~g~~t~~eAl~~GvPvVt~~ 467 (619)
. .+..++.+.+.+.... ..++|+|+|.++ ..++..+|+.+|+++-|+ +++.|.+++|||+||+|||+..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~ 331 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRL-DLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD 331 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhccc-CcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC
Confidence 0 1113344433333211 238999999998 688999999999999877 4577899999999999999855
Q ss_pred CCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 468 GSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 468 g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
..... .++. -|..++++ .|++++++.+.++++|++.+.+++++.|++... .|+++.+++++.
T Consensus 332 ~~g~~-----e~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~~ 395 (396)
T cd03818 332 TAPVR-----EVIT-DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQL 395 (396)
T ss_pred CCCch-----hhcc-cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHHh
Confidence 43111 2222 24455554 589999999999999999999999999987654 489988877763
No 28
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.64 E-value=9.1e-15 Score=155.83 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=162.5
Q ss_pred cceeEecccCCCCCCCCCccEEEecCCCCCCC-ccCCCccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecC
Q 007075 288 APVQVTWIGYPNTTGLPTIDYRITDSLADPPE-TKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFN 364 (619)
Q Consensus 288 Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~-~~~~~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~ 364 (619)
+|+-++|.......-+...|.+|+-.-..-.. .+....+++..+|++... |.|.... ..+...+++.+..+++.++
T Consensus 122 ~~~v~~~h~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~-~~~~~~~~~~~~~~il~~G 200 (380)
T PRK15484 122 AKLVMHMHNAFEPELLDKNAKIIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQP-NLRQQLNISPDETVLLYAG 200 (380)
T ss_pred CCEEEEEecccChhHhccCCEEEEcCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcchH-HHHHHhCCCCCCeEEEEec
Confidence 46666665443222234456555421000000 012234567788875321 2221110 1122334555666788888
Q ss_pred CC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhccc
Q 007075 365 NL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 437 (619)
Q Consensus 365 ~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~-----~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~ 437 (619)
|+ .|..+.++++|.++.++.|+.+|+++|.+... +...+.+++.+.+.| ++|+|+|.++ ..+...+|+.
T Consensus 201 rl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~~~-~~~l~~~~~~ 276 (380)
T PRK15484 201 RISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGGQP-PEKMHNYYPL 276 (380)
T ss_pred cCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCCCC-HHHHHHHHHh
Confidence 87 69999999999999999999999999976321 234456666665554 5799999987 6889999999
Q ss_pred CcEeecCCCC--CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcc-c--cCCHHHHHHHHHHhhcCHHHHHH
Q 007075 438 MDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I--AKNEDEYVQLALQLASDVTALAN 512 (619)
Q Consensus 438 ~Dv~Ldt~~~--~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~-v--~~~~~~y~~~a~~L~~d~~~~~~ 512 (619)
+|+++-|+.+ ++|++++|||+||+|||+.... |..-+-.-|..++ + ..|++++++.+.++++|++. .+
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g------g~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~ 349 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG------GITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL-TQ 349 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC------CcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HH
Confidence 9999998853 6689999999999999985532 2111222244554 3 36899999999999999985 66
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 513 LRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 513 lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
+++..++... ..|+++.+++++++.|+..
T Consensus 350 ~~~~ar~~~~--~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 350 IAEQAKDFVF--SKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHh
Confidence 7887776654 4499999999999999764
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=2.8e-14 Score=139.63 Aligned_cols=162 Identities=26% Similarity=0.335 Sum_probs=149.1
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
++++|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+.++|.++...|
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHH
Q 007075 81 KMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~--p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~ 158 (619)
++++|+..++++++.. +.....+.++|.++...|++++|...++++++.+|++..++.. ++..+...|+++++.+.
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE--LAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH--HHHHHHHcCCHHHHHHH
Confidence 9999999999999864 5567789999999999999999999999999999998777665 78888899999988887
Q ss_pred HHHHHH
Q 007075 159 HRDWGK 164 (619)
Q Consensus 159 ~~~~~~ 164 (619)
+++..+
T Consensus 192 ~~~~~~ 197 (234)
T TIGR02521 192 LERYQQ 197 (234)
T ss_pred HHHHHH
Confidence 766543
No 30
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.63 E-value=1e-14 Score=160.08 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=144.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
++.++++.++|+ .|..+.+++++..+.++.|+.+|+|+|.+..++...+.+++.+++.|+. ++|+|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcCC----ccHH
Confidence 456788999987 6899999999999999999999999997754556788899999999998 99999993 4678
Q ss_pred HhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHh-----cCCCcccc--CCHHHHHHHHHHhh
Q 007075 433 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-----VGLKHLIA--KNEDEYVQLALQLA 504 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~-----~gl~~~v~--~~~~~y~~~a~~L~ 504 (619)
.+|..+||++.|+.. +.+++++|||+||+|||+..-.. ...++.. .|..+++. .|++++++.+.+++
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~-----~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll 440 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGS-----CRELIEGADDEALGPAGEVVPPADPEALARAILRLL 440 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCC-----hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh
Confidence 888999999999866 77999999999999999844321 1223333 13345443 68999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 505 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 505 ~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
+|++.++++++..+++.. ..|+++.++.+++++|+
T Consensus 441 ~~~~~~~~~~~~a~~~v~--~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 441 KDPELRRAMGEAGRKRVE--RYYTLERMIDSYRRLYL 475 (475)
T ss_pred cCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 999999999999998765 44899999999999984
No 31
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.63 E-value=7.4e-15 Score=154.60 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=145.2
Q ss_pred ccceEEcCCCccc--cCCCCCC-CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH
Q 007075 325 VEELIRLPECFLC--YTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 399 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~-~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~ 399 (619)
.+++..+|++... |.+.... ...+...+++++.++|..++++ .|..+.+++++.++..+.|+.+|+++|.|
T Consensus 153 ~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g---- 228 (360)
T cd04951 153 ANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG---- 228 (360)
T ss_pred cccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----
Confidence 5788888875321 1111100 0011123455666778888866 79999999999999999999999999976
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHH
Q 007075 400 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478 (619)
Q Consensus 400 ~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~ 478 (619)
+..+.+++.+.+.|+. ++|.|+|.+ .+...+|..+|+++-|+.+ +.|.+++|||++|+|||+....... .
T Consensus 229 ~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-----e 299 (360)
T cd04951 229 PLRATLERLIKALGLS-NRVKLLGLR---DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVR-----E 299 (360)
T ss_pred CcHHHHHHHHHhcCCC-CcEEEeccc---ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChh-----h
Confidence 4567788888889988 899999984 4677889999999999876 6699999999999999985432111 1
Q ss_pred HHHhcCCCccccCCHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 479 LLTKVGLKHLIAKNEDEYVQLALQLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 479 ~l~~~gl~~~v~~~~~~y~~~a~~L~-~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
++...|. -+...|++++++...++. .+++.+..++.. +.... ..|+++.+++++++.|+
T Consensus 300 ~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 300 VVGDSGL-IVPISDPEALANKIDEILKMSGEERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred EecCCce-EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 2222121 122478999999999998 566666666665 55443 44999999999999996
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.63 E-value=1e-14 Score=156.00 Aligned_cols=174 Identities=21% Similarity=0.170 Sum_probs=139.0
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHC---CCceEEEeccCCC----CHHHHHHHHHHHHH-cCCCCCcEEEc
Q 007075 353 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFC----CDSVRHRFLSTLEQ-LGLESLRVDLL 422 (619)
Q Consensus 353 l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---P~a~l~l~g~~~~----~~~~~~~l~~~~~~-~Gi~~~rv~f~ 422 (619)
.+++.++|++++++ .|..+.+++++.++..+. |+.+|+++|.+.. +....+.+++.+++ .|++ ++|+|.
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE-DQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEEe
Confidence 45667789999988 699999999999998887 8999999997632 11345788888888 9998 999999
Q ss_pred CCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCc-cccCCHHHHHHHH
Q 007075 423 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLA 500 (619)
Q Consensus 423 g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~-~v~~~~~~y~~~a 500 (619)
|.++ ..+...+|..+|++|-|+.+ ++|.+++|||+||+|||+....... .++.. |..+ ++..|++++++.+
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~-----e~i~~-~~~g~~~~~~~~~~a~~i 358 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPL-----ETVVD-GETGFLCEPTPEEFAEAM 358 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcH-----HHhcc-CCceEEeCCCHHHHHHHH
Confidence 9998 57888999999999988766 6799999999999999986543111 22222 3334 3456899999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 007075 501 LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 536 (619)
Q Consensus 501 ~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~l 536 (619)
.++..|++.++++++..++.... .|+++.+++++
T Consensus 359 ~~l~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~ 392 (392)
T cd03805 359 LKLANDPDLADRMGAAGRKRVKE--KFSTEAFAERL 392 (392)
T ss_pred HHHHhChHHHHHHHHHHHHHHHH--hcCHHHHhhhC
Confidence 99999999999999998887653 48999988753
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.5e-14 Score=147.14 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=151.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
+|+-|...++.++|+.+|++|+++||+...+|..+|.-|.++++...|++.|++|++++|.+..+|+.||++|..++-..
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
=|+-+|++|++..|++...|..||.||.++++.++|+++|.+++.....+..+... ++..|-+.++.++|...++++.
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~--LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR--LAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH--HHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997776677666 8888999999999988888877
Q ss_pred HHH
Q 007075 164 KRF 166 (619)
Q Consensus 164 ~~~ 166 (619)
+..
T Consensus 494 ~~~ 496 (559)
T KOG1155|consen 494 EVS 496 (559)
T ss_pred HHH
Confidence 653
No 34
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.62 E-value=1.5e-14 Score=153.22 Aligned_cols=327 Identities=14% Similarity=0.104 Sum_probs=191.1
Q ss_pred cccccCCCCc-cChHHHhhHhHhhhhcCC--ceEEEEEecCcCCChhhHHHHHHH--hhhCCeEEE-ccc-CCHHHHHHH
Q 007075 187 VIGYVSPDYF-THSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKTIRFREKV--MKKGGIWRD-IYG-IDEKKVAAM 259 (619)
Q Consensus 187 rIgyvs~~~~-~h~v~~~~~~~l~~~d~~--~fev~~ys~~~~~D~~t~~~r~~~--~~~~~~~~~-~~~-~~~~~~~~~ 259 (619)
+|.++...+. ...++.+...+...+... .+++++++.....+. ..++..- ......... ... .....+.+.
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK--AWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh--HHHHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 4555544322 245666666666666666 789888876544332 1111100 000000000 000 113568889
Q ss_pred hHhCCccEEEeCCCCCCCCcchhhccCC--ccee-Eeccc--CCCCC-----CCCCccEEEecCCCCCCCc--cCCCccc
Q 007075 260 VREDKIDILVELTGHTANNKLGMMACQP--APVQ-VTWIG--YPNTT-----GLPTIDYRITDSLADPPET--KQKHVEE 327 (619)
Q Consensus 260 i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq-~~~~G--~p~tt-----g~~~~Dy~i~d~~~~p~~~--~~~~~E~ 327 (619)
|++.++||++..+... .....++.+. .|+. +.|.- .+... .+...|++++-.-..-... .....++
T Consensus 80 l~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~~k 157 (359)
T PRK09922 80 LKETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISAQR 157 (359)
T ss_pred HHhcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCHHH
Confidence 9999999998643211 1222222221 1222 33321 11111 1233455544210000000 1122467
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC----CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHH
Q 007075 328 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 403 (619)
Q Consensus 328 l~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~ 403 (619)
+..+|+.... ..... +.+ ..+..++|++++|+ .|....+++++..+ .++.+|+++|.| +.++
T Consensus 158 i~vi~N~id~---~~~~~---~~~-~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~---~~~~~l~ivG~g----~~~~ 223 (359)
T PRK09922 158 ISVIYNPVEI---KTIII---PPP-ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQT---TGEWQLHIIGDG----SDFE 223 (359)
T ss_pred EEEEcCCCCH---HHccC---CCc-ccCCCcEEEEEEEEecccCcCHHHHHHHHHhh---CCCeEEEEEeCC----ccHH
Confidence 7778874321 00000 001 11234667888886 37777888888765 347899999977 4577
Q ss_pred HHHHHHHHcCCCCCcEEEcCCccCc-HHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEecc-CCccccchhHHHH
Q 007075 404 RFLSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLL 480 (619)
Q Consensus 404 ~l~~~~~~~Gi~~~rv~f~g~~~~~-~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~-g~~~~~r~~~~~l 480 (619)
.+++.+++.|+. ++|.|.|.+.+. ++....|..+|+++-|+.+ +.|.+++|||+||+|||+.. .. |..-+
T Consensus 224 ~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~------g~~ei 296 (359)
T PRK09922 224 KCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS------GPRDI 296 (359)
T ss_pred HHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCC------ChHHH
Confidence 889999999998 899999987533 4556678999999999987 67999999999999999865 32 22112
Q ss_pred HhcCCCccc--cCCHHHHHHHHHHhhcCHHHH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 481 TKVGLKHLI--AKNEDEYVQLALQLASDVTAL--ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 481 ~~~gl~~~v--~~~~~~y~~~a~~L~~d~~~~--~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
-.-|..+++ ..|.+++++.+.++.+|++.+ .+.++.++ .|..+.+++++-++|..+.+
T Consensus 297 v~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 297 IKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred ccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhc
Confidence 223555544 478999999999999999754 33233222 26788999999999988753
No 35
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.62 E-value=1.9e-14 Score=156.40 Aligned_cols=205 Identities=13% Similarity=0.024 Sum_probs=143.2
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCC------CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHH--HHHCCCceEEEe
Q 007075 325 VEELIRLPECFLC--YTPSPEAGPVC------PTPALTNGFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVK 392 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~~~~~------~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~P~a~l~l~ 392 (619)
.+++..+|++... |.|........ ......++..++++++|+ .|..+.++++++++ +...++.+ +++
T Consensus 208 ~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~ 286 (439)
T TIGR02472 208 PERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVL 286 (439)
T ss_pred ccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEe
Confidence 4788889975422 33322111100 111233445578888988 69999999999864 33334443 345
Q ss_pred ccCCCCH-------HHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccC----cEeecCCCC-CCchhHHHhhhcC
Q 007075 393 CKPFCCD-------SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMG 460 (619)
Q Consensus 393 g~~~~~~-------~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~----Dv~Ldt~~~-~g~~t~~eAl~~G 460 (619)
|++...+ ...+++...+.+.|+. ++|+|+|.++ .++...+|+.+ |+|+.|+.+ ++|++++|||+||
T Consensus 287 G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~g~~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G 364 (439)
T TIGR02472 287 GCRDDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYPKHHR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACG 364 (439)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHcCCC-ceEEecCCCC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhC
Confidence 6542111 1234566677889998 9999999987 67888888876 999999876 7799999999999
Q ss_pred CcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 007075 461 VPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 538 (619)
Q Consensus 461 vPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~ 538 (619)
+|||+.... |..-+-.-|..+++. .|++++++...++++|++.++++++..+++.. ..|+++.+++++++
T Consensus 365 ~PvV~s~~g------g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 365 LPIVATDDG------GPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVR--RHYSWDAHVEKYLR 436 (439)
T ss_pred CCEEEeCCC------CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHH
Confidence 999975432 111122224455553 68999999999999999999999999988764 34999999999988
Q ss_pred HH
Q 007075 539 TY 540 (619)
Q Consensus 539 ~y 540 (619)
++
T Consensus 437 l~ 438 (439)
T TIGR02472 437 IL 438 (439)
T ss_pred Hh
Confidence 75
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.62 E-value=2.2e-14 Score=159.96 Aligned_cols=149 Identities=15% Similarity=0.028 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007075 12 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 91 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 91 (619)
+++++|+..++++++++|+++.++..+|.++...|++++|+.+|+++++++|+++.+++++|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 92 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID-PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 92 al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
+++++|.++.+++.++.++...|++++|+..++++++.+ |+++.++.+ ++..+...|+.++|.+.+++.
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~--la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM--QVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH--HHHHHHhCCCHHHHHHHHHHh
Confidence 999999999888888888888999999999999999885 777776655 778888899999988876654
No 37
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.62 E-value=5.9e-14 Score=147.42 Aligned_cols=326 Identities=17% Similarity=0.128 Sum_probs=200.1
Q ss_pred ccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhh-HHHHHHHhhhCCeEEEcccC-CHHHHHHHhHhCCc
Q 007075 188 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKI 265 (619)
Q Consensus 188 Igyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t-~~~r~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~ 265 (619)
|.+++..+-.- ...++......+...++++.+++.....+... ...........-.......+ ....+.+.+++.++
T Consensus 2 i~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (355)
T cd03799 2 IAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLGI 80 (355)
T ss_pred EEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566554332 33445555556666678888877654322110 00000000000000000111 12356677788999
Q ss_pred cEEEeCCCCCCCCcchhhccCC--cceeEecccCCCC--C-------CCCCccEEEecCCCCCCCccC---CCccceEEc
Q 007075 266 DILVELTGHTANNKLGMMACQP--APVQVTWIGYPNT--T-------GLPTIDYRITDSLADPPETKQ---KHVEELIRL 331 (619)
Q Consensus 266 Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G~p~t--t-------g~~~~Dy~i~d~~~~p~~~~~---~~~E~l~~l 331 (619)
||+..-..+.. .....+..+. .|+-++..|+... . .+...|++++..-..-..... ...+++..+
T Consensus 81 Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi 159 (355)
T cd03799 81 DHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVV 159 (355)
T ss_pred CEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEE
Confidence 99976443322 2233333333 3444444443211 1 133467776532111111112 345778888
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHH
Q 007075 332 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 409 (619)
Q Consensus 332 p~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~ 409 (619)
|++.. .... .+. . ....++.+++++++++ .|..+.+++++.++....|+.+|.++|.+ +....+.+.+
T Consensus 160 ~~~~d-~~~~--~~~--~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~~ 229 (355)
T cd03799 160 HCGVD-LERF--PPR--P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEALI 229 (355)
T ss_pred eCCcC-HHHc--CCc--c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHHH
Confidence 87431 1110 000 0 1223455667777776 69999999999998888899999999976 4557788888
Q ss_pred HHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC-------CCCchhHHHhhhcCCcEEeccCCccccchhHHHHHh
Q 007075 410 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK 482 (619)
Q Consensus 410 ~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~-------~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~ 482 (619)
++.++. ++|.|.|.++ .++...+|+.+|++|.|+. .++|++++|||++|+|||+....... .++..
T Consensus 230 ~~~~~~-~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----~~i~~ 302 (355)
T cd03799 230 AELGLE-DRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP-----ELVED 302 (355)
T ss_pred HHcCCC-CeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc-----hhhhC
Confidence 888987 8999999998 6899999999999999986 46689999999999999985543211 22322
Q ss_pred cCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 007075 483 VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 535 (619)
Q Consensus 483 ~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~ 535 (619)
+..+++. .|.+++++....++.|++.+..+++..++.+.. .|+++..+++
T Consensus 303 -~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~ 354 (355)
T cd03799 303 -GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEE--EFDIRKQAAR 354 (355)
T ss_pred -CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHhhc
Confidence 3334443 489999999999999999999999998887654 4888887765
No 38
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.60 E-value=4.1e-15 Score=158.99 Aligned_cols=203 Identities=11% Similarity=0.001 Sum_probs=143.3
Q ss_pred ecCCCCCCCccCCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHHH
Q 007075 311 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 383 (619)
Q Consensus 311 ~d~~~~p~~~~~~~~E~l~~lp~~~~~---~~p~~~~~~~~~~~~l~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 383 (619)
+|.++.|......+.+..+..++ ++. |.|.... .+.... +++. .+++.++|+ .|+...+++++.++.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v~-GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNVH-GVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecCc-eechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 45666676654445556665553 321 3333211 111111 2332 356788988 79999999999999988
Q ss_pred CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCc
Q 007075 384 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 462 (619)
Q Consensus 384 ~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvP 462 (619)
.|+.+|+|+|+| +.+++|++.+.++|++ .++ |.|... .+ .+|..+|||+.||.+ +.|++++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-AD---PLFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HH---HHHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999988 7889999999999987 665 888743 33 466778999999987 889999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 463 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 463 vVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
||+.... +..++.. |-..+...|.+++++++.+++.++. ..++...+ ..|+|+..++++++.|+-
T Consensus 327 VVa~~~~------~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~------~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 327 VVCANHP------SNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQR------HELSWEAATERFLRVADL 391 (462)
T ss_pred EEEecCC------Ccceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHH------HhCCHHHHHHHHHHHhcc
Confidence 9986532 1123322 5555666899999999999887542 22233222 158999999999998874
No 39
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.60 E-value=5.8e-14 Score=145.81 Aligned_cols=317 Identities=15% Similarity=0.081 Sum_probs=189.1
Q ss_pred ccccCCCCccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHH-HhhhCCeEEEc--ccCCHHHHHHHhHhCC
Q 007075 188 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGIWRDI--YGIDEKKVAAMVREDK 264 (619)
Q Consensus 188 Igyvs~~~~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~-~~~~~~~~~~~--~~~~~~~~~~~i~~d~ 264 (619)
|.+++..+....+......+...+....+++.++................ ........... .......+.+.|+..+
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKEK 81 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhcC
Confidence 45555555444455555556666666678888776654322111000000 00000000000 1112357889999999
Q ss_pred ccEEEeCCCCCCCCcchhhccCC-cceeEecccCCCCCC-------------CCCccEEEecCCCCCCCccCCC---ccc
Q 007075 265 IDILVELTGHTANNKLGMMACQP-APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQKH---VEE 327 (619)
Q Consensus 265 ~Dilvdl~g~t~~~r~~~~a~r~-Apvq~~~~G~p~ttg-------------~~~~Dy~i~d~~~~p~~~~~~~---~E~ 327 (619)
+||++.... .....+..+..+. .|+-+...+...... +...|.+++..-..-......+ .++
T Consensus 82 ~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 160 (353)
T cd03811 82 PDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDK 160 (353)
T ss_pred CCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCccc
Confidence 999998765 2222333333321 344433333221111 1445666552211111122233 377
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHH
Q 007075 328 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 405 (619)
Q Consensus 328 l~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l 405 (619)
+..+|+.... ................++.++|++++++ .|....+++++..+..+.|+.+|+++|.+ +..+.+
T Consensus 161 ~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~~ 235 (353)
T cd03811 161 IEVIYNPIDI-EEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREEL 235 (353)
T ss_pred cEEecCCcCh-hhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHHH
Confidence 8888875321 1110000000012345677889999987 69999999999999988899999999976 456677
Q ss_pred HHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcC
Q 007075 406 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 484 (619)
Q Consensus 406 ~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~g 484 (619)
.+.+...|+. ++|.|.|.++ +...+|+.+|+++.|+.+ +.|++++|||++|+|||+...... ..++. -|
T Consensus 236 ~~~~~~~~~~-~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~-----~e~i~-~~ 305 (353)
T cd03811 236 EALAKELGLA-DRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP-----REILE-DG 305 (353)
T ss_pred HHHHHhcCCC-ccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh-----HHHhc-CC
Confidence 7888899987 8999999853 567889999999999977 669999999999999998554311 12222 24
Q ss_pred CCcccc--CCHHHH---HHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 485 LKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 485 l~~~v~--~~~~~y---~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
..+++. .+++++ +.....+..|++.+++++...++.
T Consensus 306 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (353)
T cd03811 306 ENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARER 346 (353)
T ss_pred CceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 444444 456666 788888888988888877755544
No 40
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.60 E-value=2.6e-14 Score=154.21 Aligned_cols=205 Identities=17% Similarity=0.145 Sum_probs=154.4
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCC
Q 007075 325 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 398 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~~--~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~ 398 (619)
.+++..+|++... |.|..... ..+...+++++.++++.++++ .|....+++++.++ +..|+.+|+|+|.|
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 4678889985431 33321110 112234566777788889987 69999999998765 56799999999977
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCC-----chhHHHhhhcCCcEEeccCCcccc
Q 007075 399 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 473 (619)
Q Consensus 399 ~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g-----~~t~~eAl~~GvPvVt~~g~~~~~ 473 (619)
+.++.+++.++++|++ +|+|+|.++ .++...+|+.+|+++-|+..++ ++.+.|||+||+|||+.... +
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~---g 341 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEP---G 341 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCC---C
Confidence 5678888899999985 699999987 6889999999999998887643 34579999999999985421 0
Q ss_pred chhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 474 NVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 474 r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
.....++. + .+++. .|++++++...+|..|++.++++++..++... ..|+++.+++++++.|+++..
T Consensus 342 ~~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 342 TELGQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAE--RTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred chHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHhc
Confidence 00112333 3 34443 68999999999999999999999999988754 349999999999999998763
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=4e-14 Score=160.44 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=143.3
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
|+++|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++.++|.++..+|
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HHH-HHhhcCCcHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL----LAM-NYINEGHDDKL 155 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~----la~-~~~~~g~~~~a 155 (619)
++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|+....+.+.. .+. .+...++++++
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999997644333211 112 23335777777
Q ss_pred HHHHHHH
Q 007075 156 FEAHRDW 162 (619)
Q Consensus 156 ~~~~~~~ 162 (619)
.+.+++.
T Consensus 528 ~~~~~kA 534 (615)
T TIGR00990 528 ENLCEKA 534 (615)
T ss_pred HHHHHHH
Confidence 7665543
No 42
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.59 E-value=6.7e-15 Score=159.55 Aligned_cols=262 Identities=10% Similarity=-0.040 Sum_probs=164.3
Q ss_pred CHHHHHHHhHhCCccEEEeCC-CCCCCCc-chhhccCCcceeEeccc----CCCCCCCCCccE------------EEecC
Q 007075 252 DEKKVAAMVREDKIDILVELT-GHTANNK-LGMMACQPAPVQVTWIG----YPNTTGLPTIDY------------RITDS 313 (619)
Q Consensus 252 ~~~~~~~~i~~d~~Dilvdl~-g~t~~~r-~~~~a~r~Apvq~~~~G----~p~ttg~~~~Dy------------~i~d~ 313 (619)
+...+.+.|.+.++||++=-+ +|-.... -...|.|.-|+-.++.- |...-++..+-. +.+|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 346899999999999996211 1111110 11234455566544322 111112111111 11466
Q ss_pred CCCCCCccCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceE
Q 007075 314 LADPPETKQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 389 (619)
Q Consensus 314 ~~~p~~~~~~~~E~l~~lp~~~~--~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l 389 (619)
++.|......+...++...++.. -|.|....... ...+++.....++.++|+ .|....+++++..+....|+.+|
T Consensus 502 VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~-r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrL 580 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEE-RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNL 580 (794)
T ss_pred EEcCCHHHHHhcccceeecccccccccCCcchhHHH-HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEE
Confidence 77777655444444444333211 14443221111 112222111113345677 79999999999999988999999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccC
Q 007075 390 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 390 ~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g 468 (619)
+|+|+| +.++.+++.+.++|+. |.|+|... +...+|+.+|||+.|+.+ +.|++++|||+||+|||+...
T Consensus 581 vIVGDG----P~reeLe~la~eLgL~---V~FLG~~d---d~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~ 650 (794)
T PLN02501 581 DVFGNG----EDAHEVQRAAKRLDLN---LNFLKGRD---HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADH 650 (794)
T ss_pred EEEcCC----ccHHHHHHHHHHcCCE---EEecCCCC---CHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecC
Confidence 999987 7788899999998883 89999853 344688889999999987 779999999999999997653
Q ss_pred CccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 007075 469 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 539 (619)
Q Consensus 469 ~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~ 539 (619)
.. ..++. -|...++..|.+++++.+.+++.|++.+...+ + ...|+|+.+++++++.
T Consensus 651 pG------~e~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~----a----~~~~SWeAaadrLle~ 706 (794)
T PLN02501 651 PS------NEFFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLTPE----Q----RYNLSWEAATQRFMEY 706 (794)
T ss_pred CC------CceEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhHHH----H----HhhCCHHHHHHHHHHh
Confidence 21 11111 14455567899999999999999886442222 1 1248899998888764
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=4.5e-15 Score=157.47 Aligned_cols=159 Identities=21% Similarity=0.374 Sum_probs=147.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------CCCcHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHF----------------------------------NPHCAEACNNLGVIYKDRDN 47 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~----------------------------------~p~~~~a~~~la~~~~~~g~ 47 (619)
.++|.+|+++++|++|..+|+.+-+. +|+.++.|..+|+||..+++
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhH
Confidence 47899999999999999999887765 45668899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 48 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 48 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
++.|+++|++|++++|+++.++..+|.-+....++|.|..+|++|+..+|.+-.||+.||.+|.++++++.|.-+|++|+
T Consensus 437 h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 128 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 128 ~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
+++|.+...... .+..+...|..+++++.+++.
T Consensus 517 ~INP~nsvi~~~--~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 517 EINPSNSVILCH--IGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred cCCccchhHHhh--hhHHHHHhhhhhHHHHHHHHH
Confidence 999999877776 666777888888888877654
No 44
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.59 E-value=3.5e-14 Score=155.31 Aligned_cols=168 Identities=8% Similarity=0.020 Sum_probs=135.0
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 357 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 357 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
..++.+++|+ .|..+.+++++.++.++.|+++|+|+|.| +.++.+++.+++.|+. ++|.|.|.. +...+
T Consensus 319 ~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l~-~~V~f~G~~----~~~~~ 389 (500)
T TIGR02918 319 PFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQAQ-DYIHLKGHR----NLSEV 389 (500)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEcCCC----CHHHH
Confidence 3467777887 79999999999999999999999999977 5678899999999998 999999974 45667
Q ss_pred cccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC------C----HHHHHHHHHHh
Q 007075 435 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------N----EDEYVQLALQL 503 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~------~----~~~y~~~a~~L 503 (619)
|+.+|+++.|+.+ ++|.|++|||+||+|||+..-. .|..-+..-|..+++.. | +++++++..+|
T Consensus 390 ~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~-----~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 390 YKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN-----YGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred HHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC-----CCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 8889999999976 7799999999999999985411 12222333366676653 2 78899999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 504 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 504 ~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
+. ++.++++++..++.. ..|+++.+++++++++++
T Consensus 465 l~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 465 FN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 84 557888888888743 349999999999988875
No 45
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.59 E-value=3.3e-14 Score=149.38 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=136.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 352 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 352 ~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
.+.++..+|++++++ .|..+.++++|.++..+.|+.+|+++|.+ +....+++.+.+.++. ++|.|.|.++ ..
T Consensus 197 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 270 (374)
T cd03817 197 GIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGLA-DRVIFTGFVP-RE 270 (374)
T ss_pred CCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCCC-CcEEEeccCC-hH
Confidence 345566778888876 68889999999999988899999999976 5567788888888987 8999999998 68
Q ss_pred HHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC-CHHHHHHHHHHhhcCH
Q 007075 430 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-NEDEYVQLALQLASDV 507 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~-~~~~y~~~a~~L~~d~ 507 (619)
++...|+.+|+++.|+.. ++|++++|||+||+|||+.....+. .++ .-|-.+++.. +.+++++.+.++.+|+
T Consensus 271 ~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~-----~~i-~~~~~g~~~~~~~~~~~~~i~~l~~~~ 344 (374)
T cd03817 271 ELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLP-----DLV-ADGENGFLFPPGDEALAEALLRLLQDP 344 (374)
T ss_pred HHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChh-----hhe-ecCceeEEeCCCCHHHHHHHHHHHhCh
Confidence 899999999999999876 7789999999999999986643221 222 2233444443 3339999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 508 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 508 ~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
+.++.+++..++..... + +.+++++.|++
T Consensus 345 ~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 345 ELRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 99999998888765432 2 77888888765
No 46
>PLN02939 transferase, transferring glycosyl groups
Probab=99.59 E-value=4.1e-14 Score=159.37 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=148.1
Q ss_pred CccceEEcCCCcc--ccCCCCCC------------------CCCCCCCCCCC---CCeEEEecCCC--CcCCHHHHHHHH
Q 007075 324 HVEELIRLPECFL--CYTPSPEA------------------GPVCPTPALTN---GFITFGSFNNL--AKITPKVLQVWA 378 (619)
Q Consensus 324 ~~E~l~~lp~~~~--~~~p~~~~------------------~~~~~~~~l~~---~~~~f~~~~~~--~K~~~~~~~~~~ 378 (619)
..+++.-+||+.. .|.|..+. ...+...+++. +.++||+++|+ .|..+.+++++.
T Consensus 723 ~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~ 802 (977)
T PLN02939 723 HSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIY 802 (977)
T ss_pred ccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHH
Confidence 4577888887543 35665321 01122345553 56789999999 799999999999
Q ss_pred HHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhh
Q 007075 379 RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESL 457 (619)
Q Consensus 379 ~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl 457 (619)
+++. ++.+|+|+|.|. .......++....++++. ++|.|+|... ......+|..+|+||-|+.+ ++|.|.+|||
T Consensus 803 ~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l~-drV~FlG~~d-e~lah~IYAaADIFLmPSr~EPfGLvqLEAM 877 (977)
T PLN02939 803 KTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQSN-NNIRLILKYD-EALSHSIYAASDMFIIPSMFEPCGLTQMIAM 877 (977)
T ss_pred HHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCCC-CeEEEEeccC-HHHHHHHHHhCCEEEECCCccCCcHHHHHHH
Confidence 8875 589999999762 224567888888899997 8999999865 23345789999999999987 7899999999
Q ss_pred hcCCcEEecc-CCccccchh---HHHHHhcCCCccc--cCCHHHHHHHHHHhh----cCHHHHHHHHHHHHHHhhcCCCC
Q 007075 458 YMGVPCVTMA-GSVHAHNVG---VSLLTKVGLKHLI--AKNEDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVC 527 (619)
Q Consensus 458 ~~GvPvVt~~-g~~~~~r~~---~~~l~~~gl~~~v--~~~~~~y~~~a~~L~----~d~~~~~~lr~~~r~~~~~~~~~ 527 (619)
++|+|+|+.. |. ...-+. ...+..-|..+++ ..|++++.+.+.+++ .|++.+.+++++. +. ..|
T Consensus 878 AyGtPPVVs~vGG-L~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a---m~--~dF 951 (977)
T PLN02939 878 RYGSVPIVRKTGG-LNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKD---MN--IDF 951 (977)
T ss_pred HCCCCEEEecCCC-CcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH---HH--hcC
Confidence 9998877532 21 110000 0000011334444 358888887766654 4888888877643 22 359
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 007075 528 DGQNFALGLESTYRNMWHR 546 (619)
Q Consensus 528 ~~~~~~~~le~~y~~~~~~ 546 (619)
+|+.++++++++|++++.+
T Consensus 952 SWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 952 SWDSSASQYEELYQRAVAR 970 (977)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=9.3e-14 Score=161.68 Aligned_cols=159 Identities=14% Similarity=0.018 Sum_probs=144.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+++|.++.+.|++++|+.+|+++++.+|.....+..++..+...|++++|+..|+++++++|+ ..++.++|.++.+.|+
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC
Confidence 467888899999999999999999999988888888887777889999999999999999996 8899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++|+++.++.+ ++.++...|+++++...+++
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n--LA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ--LAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888 78888999999988887766
Q ss_pred HH
Q 007075 162 WG 163 (619)
Q Consensus 162 ~~ 163 (619)
..
T Consensus 703 Al 704 (987)
T PRK09782 703 VI 704 (987)
T ss_pred HH
Confidence 54
No 48
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.59 E-value=5.7e-14 Score=147.70 Aligned_cols=254 Identities=15% Similarity=0.081 Sum_probs=163.9
Q ss_pred hHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCC-------------CCCCccEEEecCCCCCC--CccCCC
Q 007075 260 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT-------------GLPTIDYRITDSLADPP--ETKQKH 324 (619)
Q Consensus 260 i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~tt-------------g~~~~Dy~i~d~~~~p~--~~~~~~ 324 (619)
+...++||++--...........+..+..|+-+.|-+..... .+...|.+++..-..-. .....+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 568899999754333222222222233456655654422111 01224555542100000 011233
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHH
Q 007075 325 VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 400 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~ 400 (619)
.+++..+|++... +.+... ........+.+.+++++++++ .|....+++++.++. +.+|+++|.+ +
T Consensus 159 ~~~~~~i~~gi~~~~~~~~~~--~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~ 228 (357)
T cd03795 159 RDKVRVIPLGLDPARYPRPDA--LEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----P 228 (357)
T ss_pred ccceEEecCCCChhhcCCcch--hhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----h
Confidence 4788888875322 111110 000111234556678888887 688888888887764 8999999976 5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC---CCCchhHHHhhhcCCcEEeccCCccccchhH
Q 007075 401 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 477 (619)
Q Consensus 401 ~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~---~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~ 477 (619)
....+.+.+++.+.. ++|+|.|.++ ..+...+|+.||+++-|+. .++|.+++|||++|+|||+...... .
T Consensus 229 ~~~~~~~~~~~~~~~-~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~-----~ 301 (357)
T cd03795 229 LEAELEALAAALGLL-DRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG-----G 301 (357)
T ss_pred hHHHHHHHHHhcCCc-ceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc-----h
Confidence 567778888888988 8999999998 6889999999999998874 4779999999999999998553211 1
Q ss_pred HHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 007075 478 SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 532 (619)
Q Consensus 478 ~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~ 532 (619)
..+...|-.+++. .|.+++++....+.+|++.++.+++..++.... .|+++.+
T Consensus 302 ~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~ 356 (357)
T cd03795 302 SYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEE--EFTADRM 356 (357)
T ss_pred hHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--hcchHhh
Confidence 1222224444444 689999999999999999999999999887653 4777765
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.58 E-value=1.5e-13 Score=141.20 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
|+++|.++...|++++|+..|+++++++|+++.+|+++|.++...|++++|++.|+++++++|++..++.++|.++...|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
++++|++.++++++++|+++..... ..++...+++++|+..++++...
T Consensus 147 ~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 147 RYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999999999999998742222 22345677899999999776654
No 50
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.58 E-value=1.2e-13 Score=144.72 Aligned_cols=269 Identities=19% Similarity=0.153 Sum_probs=176.9
Q ss_pred HHHHHHhH--hCCccEEEeCCCCCCCCcchhhccCC--cceeEecccCCCCC-------------CCCCccEEEecCCCC
Q 007075 254 KKVAAMVR--EDKIDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTT-------------GLPTIDYRITDSLAD 316 (619)
Q Consensus 254 ~~~~~~i~--~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G~p~tt-------------g~~~~Dy~i~d~~~~ 316 (619)
..+.+.|+ ..++||++-......+ .+.....+. .|+-+...+..... .+...|++++..-..
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 159 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDG-FAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEAL 159 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHH-HHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHH
Confidence 46888888 9999999765333222 122222222 35555544422111 123456666532111
Q ss_pred CCCccC--CCccceEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceE
Q 007075 317 PPETKQ--KHVEELIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 389 (619)
Q Consensus 317 p~~~~~--~~~E~l~~lp~~~~~~~p~~~~~~~~---~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l 389 (619)
...... ....++..+|++.. +....+... ......++.++|+++++. .|....+++++..+....|+.+|
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l 236 (377)
T cd03798 160 ADELKALGIDPEKVTVIPNGVD---TERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHL 236 (377)
T ss_pred HHHHHHhcCCCCceEEcCCCcC---cccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEE
Confidence 111112 25567888886431 111111000 011334566788888887 68889999999999888899999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccC
Q 007075 390 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 390 ~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g 468 (619)
++.|.+ +....+.+.++..++. ++|.+.|.++ ..+....|..||+++.|+.+ ++|++++|||++|+|||+...
T Consensus 237 ~i~g~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 237 VIVGDG----PLREALEALAAELGLE-DRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred EEEcCC----cchHHHHHHHHhcCCc-ceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC
Confidence 999876 4456677777888887 8999999997 68899999999999999876 779999999999999998654
Q ss_pred CccccchhHHHHHhcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 469 SVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 469 ~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
... ..++.. +..+++ ..|.+++++...++..|++. .+....+.... ..|+++.+++++.++|++
T Consensus 311 ~~~-----~~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 311 GGI-----PEIITD-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred CCh-----HHHhcC-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 311 112222 333343 36899999999999999876 34444444333 348999999999998875
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.2e-13 Score=154.17 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 13 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 13 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
++++|+.+|+++++++|+++.+|.++|.++... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 478999999999999999999999999987643 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
+|+.+|+++++++|+++.+++++|.++..+|++++|+..++++++++|.+..+... ++..+...|++++|.+.+++..
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~--~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT--KLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766544 3334556788888887766543
No 52
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.57 E-value=2.1e-13 Score=143.42 Aligned_cols=313 Identities=17% Similarity=0.109 Sum_probs=193.1
Q ss_pred ChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEcccC---------CHHHHHHHhHhCCccEE
Q 007075 198 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI---------DEKKVAAMVREDKIDIL 268 (619)
Q Consensus 198 h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~~---------~~~~~~~~i~~d~~Dil 268 (619)
..+......+.......++++++++..... ...+.. .+..++.+... ....+.+.++..++||+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii 82 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL---VAELEA----EGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch---HHHHHh----cCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEE
Confidence 344455555555566667888877653221 111211 11223322110 12457788999999999
Q ss_pred EeCCCCCCCCcchhhccCC--cceeEecccCCCCC-----CCCCccEEEecCCCCCCCcc---CCCccceEEcCCCccc-
Q 007075 269 VELTGHTANNKLGMMACQP--APVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QKHVEELIRLPECFLC- 337 (619)
Q Consensus 269 vdl~g~t~~~r~~~~a~r~--Apvq~~~~G~p~tt-----g~~~~Dy~i~d~~~~p~~~~---~~~~E~l~~lp~~~~~- 337 (619)
+.-+.+.. ....++.+. .|+-..+.|+.... .+...|.+++..-....... +...+++..+|++.-.
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~ 160 (355)
T cd03819 83 HARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLD 160 (355)
T ss_pred EECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCcccc
Confidence 76443322 222233222 46555566543221 12345666652200001111 2234788888875311
Q ss_pred -cCCCCCCCC----CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHH
Q 007075 338 -YTPSPEAGP----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE 410 (619)
Q Consensus 338 -~~p~~~~~~----~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~ 410 (619)
|.+...... .+....++++.++++.++++ .|..+.+++++..+....|+.+|+++|.+...+...+.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~ 240 (355)
T cd03819 161 RFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIK 240 (355)
T ss_pred ccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHH
Confidence 111110000 01111345667788888887 79999999999999888899999999987555566777788888
Q ss_pred HcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCC-CC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcc
Q 007075 411 QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL 488 (619)
Q Consensus 411 ~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~-~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~ 488 (619)
+.++. ++|.|.|. ..+...+|..+|+++.|+ .+ ++|++++|||++|+|||+...... ..++.. +..++
T Consensus 241 ~~~~~-~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~-----~e~i~~-~~~g~ 310 (355)
T cd03819 241 RLGLQ-DRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGA-----RETVRP-GETGL 310 (355)
T ss_pred HcCCc-ceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCc-----HHHHhC-CCceE
Confidence 99997 89999999 457888999999999998 44 779999999999999998653211 222322 33344
Q ss_pred c--cCCHHHHHHHHH-HhhcCHHHHHHHHHHHHHHhhcCCCCChHH
Q 007075 489 I--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSKSPVCDGQN 531 (619)
Q Consensus 489 v--~~~~~~y~~~a~-~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~ 531 (619)
+ ..|++++++... .+..|++.+.+++++.++.... .|+.+.
T Consensus 311 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~--~f~~~~ 354 (355)
T cd03819 311 LVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVET--LFSYDR 354 (355)
T ss_pred EeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hhhhcc
Confidence 4 368888888875 4445899999999998876553 366543
No 53
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.57 E-value=1.6e-13 Score=155.79 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~----A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
.++.++...|++++|+..|+++++.+|+++.+++++|.++...|++++ |+..|+++++++|++..++.++|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~ 158 (619)
+|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++.+|++...... ++..+...|+.+++.+.
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~--~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY--AAAALLQAGKTSEAESV 374 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH--HHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998754433 56677888999998888
Q ss_pred HHHHHHH
Q 007075 159 HRDWGKR 165 (619)
Q Consensus 159 ~~~~~~~ 165 (619)
+++..+.
T Consensus 375 l~~al~~ 381 (656)
T PRK15174 375 FEHYIQA 381 (656)
T ss_pred HHHHHHh
Confidence 7765544
No 54
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.57 E-value=6.6e-14 Score=148.79 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=130.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
...+|.+++++ .|..+.+++++.++..+.|+.+|.++|.+ +....+....++.++. ++|.|.|. ..+...
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~ 274 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGLE-DYVFLKGY---TRDLDE 274 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCCc-ceEEEcCC---CCCHHH
Confidence 34456677776 79999999999999999999999999977 3456677777888998 89999996 356888
Q ss_pred hcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC--CHHHHHHHHHHhhcCHHHH
Q 007075 434 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~~L~~d~~~~ 510 (619)
.|+.+|++++|+.+ ++|.+++|||++|+|||+.... .|..-+..-|..+++.+ |++++++.+.+++.|++.+
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~-----~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 349 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN-----YGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLL 349 (372)
T ss_pred HHhhhhEEEecccccccChHHHHHHhCCCCEEEecCC-----CCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHH
Confidence 99999999999987 7799999999999999985421 02222223356666665 9999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHH
Q 007075 511 ANLRMSLRDLMSKSPVCDGQNFALG 535 (619)
Q Consensus 511 ~~lr~~~r~~~~~~~~~~~~~~~~~ 535 (619)
+.+++..++.. ..|+++.++++
T Consensus 350 ~~~~~~a~~~~---~~~s~~~~~~~ 371 (372)
T cd04949 350 QKFSEAAYENA---ERYSEENVWEK 371 (372)
T ss_pred HHHHHHHHHHH---HHhhHHHHHhc
Confidence 99999888762 24788877654
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=3.9e-13 Score=131.49 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=142.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQ 79 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~ 79 (619)
..+|.++...|++++|+..|+++++..|.+..++.++|.++...|++++|++.++++++.. +.....+.++|.++...
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999999999999999999999999999864 55677899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 80 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 80 g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
|++++|...++++++.+|++..++..+|.++...|++++|+.+++++++..|.+...+. ..+..+...|+.+++.+..
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW--LGIRIARALGDVAAAQRYG 226 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766654 3667777788877766654
Q ss_pred HH
Q 007075 160 RD 161 (619)
Q Consensus 160 ~~ 161 (619)
+.
T Consensus 227 ~~ 228 (234)
T TIGR02521 227 AQ 228 (234)
T ss_pred HH
Confidence 43
No 56
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=1.1e-13 Score=133.08 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 007075 11 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAE 87 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~--~~eA~~ 87 (619)
.++.++++..++++++.+|++.++|..+|.+|...|++++|+.+|+++++++|+++..+.++|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 88 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 88 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
.++++++.+|+++.+++++|.++...|++++|+.+|+++++++|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887643
No 57
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.56 E-value=1.4e-13 Score=157.41 Aligned_cols=182 Identities=14% Similarity=0.063 Sum_probs=142.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHH--CCCceEEEeccCCC-------CHHHHHHHHHHHHHcCCCCCcEEEc
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLL 422 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~P~a~l~l~g~~~~-------~~~~~~~l~~~~~~~Gi~~~rv~f~ 422 (619)
..+.++|.+++|+ .|+...+++++..+... .|+.++ ++|.+-. ..+....+++.+.+.|+. ++|.|.
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~Fl 553 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYP 553 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEec
Confidence 4455678889998 69999999999988653 356553 4564311 123456788899999998 999999
Q ss_pred CCccCcHHHHHhcccC----cEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHH
Q 007075 423 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDE 495 (619)
Q Consensus 423 g~~~~~~~~~~~~~~~----Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~ 495 (619)
|.++ ..+...+|+.| |||+.|+.+ ++|+|++|||+||+|||+..-. |..-+...|..++++ .|+++
T Consensus 554 G~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG------G~~EII~~g~nGlLVdP~D~ea 626 (1050)
T TIGR02468 554 KHHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG------GPVDIHRVLDNGLLVDPHDQQA 626 (1050)
T ss_pred CCCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC------CcHHHhccCCcEEEECCCCHHH
Confidence 9987 67888899877 699999977 8899999999999999975421 222222235556554 58999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 007075 496 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 547 (619)
Q Consensus 496 y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~~ 547 (619)
+++...+++.|++.++++++..+++.. .|+|+.+++++.+.|.....++
T Consensus 627 LA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 627 IADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999988753 4999999999999999886543
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=2.5e-13 Score=134.77 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=144.6
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~ 74 (619)
++++|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence 46889999999999999999999999999875 68899999999999999999999999999998776 7899999
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 75 VYTVQ--------GKMDAAAEMIEKAIAANPTYAEAY-----------------NNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 75 ~~~~~--------g~~~eA~~~~~~al~~~p~~~~a~-----------------~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
++... |++++|+..++++++.+|++..++ ..+|.+|...|++++|+..|+++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99876 889999999999999999986442 36788999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 007075 130 DPDSR---NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 166 (619)
Q Consensus 130 ~P~~~---~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 166 (619)
.|+.+ .++.. ++..+...|+++++...++....++
T Consensus 196 ~p~~~~~~~a~~~--l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 196 YPDTPATEEALAR--LVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred CCCCcchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88753 45444 8889999999999998877766553
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=8.2e-14 Score=127.04 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+++|.++...|++++|+.+|++++..+|.+..++.++|.++...|++++|+..|+++++++|+++.+++++|.++...|+
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
+++|+..|++++++.|+++..+.++|.+...+
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.55 E-value=9.1e-13 Score=137.30 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=130.0
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
+++.++|+.++++ .|....+++++..+.+..|+.+|+++|.+......... .+.+.+.. ++|.|.|. ..+.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~~-~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGLE-GRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCCc-ceEEEeec---cccH
Confidence 4566788888877 69999999999999888899999999977432221111 35666776 89999998 3578
Q ss_pred HHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHH
Q 007075 432 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 508 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~ 508 (619)
..+|+.+|+++.|+.+ +.|++++|||++|+|||+...... ..++.. |..+++. .|++++++...++..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~-----~~~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC-----REAVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCc-----hhhhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 8899999999999876 669999999999999998654321 122222 3344444 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 509 ALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 509 ~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
.+.++++..++.... .|+++.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEE--EFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999999888876443 489999988875
No 61
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.55 E-value=4.1e-13 Score=140.05 Aligned_cols=311 Identities=11% Similarity=-0.031 Sum_probs=177.1
Q ss_pred cccccCCCC------ccChHHHhhHhHhhhhcCCceEEEEEecCcCCChhhHHHHHHHhhhCCeEEEccc------CCHH
Q 007075 187 VIGYVSPDY------FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 254 (619)
Q Consensus 187 rIgyvs~~~------~~h~v~~~~~~~l~~~d~~~fev~~ys~~~~~D~~t~~~r~~~~~~~~~~~~~~~------~~~~ 254 (619)
+|.++...+ ....+..+...+...+...+.++.+++........ ....... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA--PLVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc--ceeeccC--CCcccccchhhHhhHHHHH
Confidence 445554443 34455555566666666667888888765432111 1111000 011110000 0124
Q ss_pred HHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCC------CCCccEEEecCCCCCCCccCCCccce
Q 007075 255 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHVEEL 328 (619)
Q Consensus 255 ~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg------~~~~Dy~i~d~~~~p~~~~~~~~E~l 328 (619)
.+.+.|+..++||+...+...... ....+-.|+-.+..+...... ....|.+++-.-......... +++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLPLP---FARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL--PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccchh---hhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc--ccc
Confidence 577888999999996543222211 222334466666666542211 122233333110000000111 567
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHH
Q 007075 329 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFL 406 (619)
Q Consensus 329 ~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~ 406 (619)
..+|++.. +..-. + .+.+..+++.++++ .|....++++.. .++.+|+++|.+. ....+.
T Consensus 153 ~vi~ngvd---~~~~~-~------~~~~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~----~~~~~~ 213 (335)
T cd03802 153 ATVHNGID---LDDYP-F------RGPKGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVS----DPDYFY 213 (335)
T ss_pred EEecCCcC---hhhCC-C------CCCCCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCC----CHHHHH
Confidence 77776431 11000 0 11222345566666 788888777643 3579999999773 223334
Q ss_pred HHHHHcC-CCCCcEEEcCCccCcHHHHHhcccCcEeecCCC--CCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhc
Q 007075 407 STLEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 483 (619)
Q Consensus 407 ~~~~~~G-i~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~--~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~ 483 (619)
....+.. +. ++|+|.|.++ ..+...+|+.+|+++-|+. .++|.+++|||+||+|||+...... .-+-.-
T Consensus 214 ~~~~~~~~~~-~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~------~e~i~~ 285 (335)
T cd03802 214 REIAPELLDG-PDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAV------PEVVED 285 (335)
T ss_pred HHHHHhcccC-CcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCc------hhheeC
Confidence 4444433 45 8999999998 5788899999999999875 4779999999999999998654321 112223
Q ss_pred CCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 484 GLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 484 gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
|..+++.++++++++.+..+..+.. +..++... ..|+++.++++++++|+
T Consensus 286 ~~~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 GVTGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred CCcEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 5567777779999988888866542 22333322 45999999999999984
No 62
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.55 E-value=9.7e-14 Score=137.49 Aligned_cols=223 Identities=20% Similarity=0.223 Sum_probs=159.9
Q ss_pred CCCccEEEecCCCCCCCc---cCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHH
Q 007075 303 LPTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQ 375 (619)
Q Consensus 303 ~~~~Dy~i~d~~~~p~~~---~~~~~E~l~~lp~~~~--~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~ 375 (619)
+..+|..|+-....-++. ...-.+++..+|+.-. .|.|.+.. . ...+.+++...+|+ .|..+.++.
T Consensus 143 L~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~---~----~S~~i~~ivv~sRLvyrKGiDll~~ 215 (426)
T KOG1111|consen 143 LANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD---K----PSADIITIVVASRLVYRKGIDLLLE 215 (426)
T ss_pred ecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc---c----CCCCeeEEEEEeeeeeccchHHHHH
Confidence 455677665444444442 2456789999998433 35563322 1 12343667777787 699999999
Q ss_pred HHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHH
Q 007075 376 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTC 454 (619)
Q Consensus 376 ~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~ 454 (619)
+..++.++.|+++++++|+| |-+..+++.++++-+. +||.|+|.++ .++....|..-||||.|+.. .+|++++
T Consensus 216 iIp~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l~-~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~iv 289 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFLQ-DRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIV 289 (426)
T ss_pred HHHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhcc-CceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHH
Confidence 99999999999999999988 7788888999999998 9999999998 78999999999999999965 8899999
Q ss_pred HhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCC--------HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC
Q 007075 455 ESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 526 (619)
Q Consensus 455 eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~--------~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~ 526 (619)
||+.||+|||+ .|+| |++|.+..| +++.++....-+.... ..-+...+++ ...
T Consensus 290 EAaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~---~~p~~~h~~v--~~~ 350 (426)
T KOG1111|consen 290 EAASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKLR---TLPLEFHDRV--KKM 350 (426)
T ss_pred HHHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHhc---cCchhHHHHH--HHh
Confidence 99999999997 5566 788766544 4444444333332211 1112223332 345
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007075 527 CDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEM 560 (619)
Q Consensus 527 ~~~~~~~~~le~~y~~~~~~~~~g~~p~~~~~~~ 560 (619)
++|...+++.|..|.++-.. ...+...|++.
T Consensus 351 y~w~dVa~rTekvy~r~~~t---~~~~~~~r~~~ 381 (426)
T KOG1111|consen 351 YSWKDVAERTEKVYDRAATT---SIRNEQDRLKI 381 (426)
T ss_pred ccHHHHHHHHHHHHHHHhhc---cCcCHHHHHHH
Confidence 89999999999999998642 22344455553
No 63
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.55 E-value=1.3e-13 Score=147.92 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=136.1
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH----HHHHHHHHHCCCceEEEeccCC
Q 007075 325 VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL----QVWARILCAVPNSRLVVKCKPF 396 (619)
Q Consensus 325 ~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~----~~~~~il~~~P~a~l~l~g~~~ 396 (619)
.+++..+|++... |.|.... .. ..+.+..+++.+|++ .|+.+.++ ++|..+.++.|+.+|+|+|.+.
T Consensus 195 ~~~v~vipngvd~~~f~~~~~~----~~-~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~ 269 (397)
T TIGR03087 195 AGRITAFPNGVDADFFSPDRDY----PN-PYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP 269 (397)
T ss_pred CCCeEEeecccchhhcCCCccc----cC-CCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3578888875421 2222111 11 123344567777776 57777665 6788888889999999999762
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC--CCchhHHHhhhcCCcEEeccCCccccc
Q 007075 397 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHN 474 (619)
Q Consensus 397 ~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~--~g~~t~~eAl~~GvPvVt~~g~~~~~r 474 (619)
. .. +++++.. ++|+|+|.++ +...+|+.+||++-|+.. +.+++++|||+||+|||+....
T Consensus 270 ----~-~~----~~~l~~~-~~V~~~G~v~---~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~----- 331 (397)
T TIGR03087 270 ----S-PA----VRALAAL-PGVTVTGSVA---DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA----- 331 (397)
T ss_pred ----h-HH----HHHhccC-CCeEEeeecC---CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc-----
Confidence 1 12 3344554 7899999975 567888999999999864 4577999999999999986421
Q ss_pred hhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 475 VGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 475 ~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
+..+....|..-+++.|++++++.+.+|..|++.+++++++.|+.... .|+++..+++++++|.
T Consensus 332 -~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~--~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 332 -AEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQ--HYHWPRNLARLDALLE 395 (397)
T ss_pred -cccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhc
Confidence 111111123333566899999999999999999999999999887643 4999999999999885
No 64
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.54 E-value=1.4e-13 Score=144.54 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=129.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
++..+|+.++++ .|..+.+++++.++..+ |+.+|+++|.+ +....++ +.. ++|.|.|.++ ..+..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~----~~~~~~~------~~~-~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG----PARARLE------ARY-PNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC----chHHHHh------ccC-CcEEEEeccC-HHHHH
Confidence 455678888876 68989999999999888 99999999976 2233332 344 7899999977 68899
Q ss_pred HhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHH
Q 007075 433 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTA 509 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~ 509 (619)
..|..+|++|.|+.. ++|++++|||+||+|||+........ ++.. +-.+++. .+.+++++.+.++..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPAD-----IVTD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchh-----hhcC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999999866 77999999999999999876543222 2222 2333443 5678899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 510 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 510 ~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
+.++.+..++.. ..|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999998888765 34899999999998874
No 65
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.54 E-value=2.6e-13 Score=143.14 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=127.0
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHHH-CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 358 ITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 358 ~~f~~~~~~--~K~~~~~~~~~~~il~~-~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
+.|+..... .|....+++++..+.++ .|+.+++++|.+.. . . ..++. ++|+|+|++++.++...+
T Consensus 194 i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~--~--~-------~~~~~-~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 194 ILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP--E--I-------PPDLP-FPVHYLGSLNDDESLALI 261 (365)
T ss_pred EEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch--h--h-------hccCC-CceEecCCcCCHHHHHHH
Confidence 344555544 79999999999877665 68999999987621 1 1 11555 789999999865678889
Q ss_pred cccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCHHHHH
Q 007075 435 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~ 511 (619)
|+.+|+++.|+.+ ++|.+++|||++|+|||+.....+.. ++. -+..+++. .|.+++++...++..|++.+.
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e-----~~~-~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~ 335 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPD-----IVD-HGVTGYLAKPGDPEDLAEGIEWLLADPDERE 335 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChh-----hee-CCCceEEeCCCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999876 77999999999999999865432222 121 13334443 478999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 512 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 512 ~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
++++..++... ..|+++.++++++++|+++
T Consensus 336 ~~~~~~~~~~~--~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 336 ELGEAARELAE--NEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHhhC
Confidence 99999887654 3489999999999999863
No 66
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.54 E-value=6.1e-13 Score=142.24 Aligned_cols=175 Identities=16% Similarity=0.118 Sum_probs=138.6
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCccCc
Q 007075 353 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 428 (619)
Q Consensus 353 l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~--~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~ 428 (619)
.+.+.++|+.++|+ .|..+.+++++..+..+.|+.+|+++|++... ......+++..++.|+. ++|.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCC-H
Confidence 44566788888988 68999999999999988999999999876432 12234567777888998 8999999998 6
Q ss_pred HHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhc
Q 007075 429 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 505 (619)
Q Consensus 429 ~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~ 505 (619)
.+...++..+|++|.|+.+ +.|++++|||++|+|||+..... ...++.. +-.+++. .|++++++.+.+++.
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~-----~~e~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG-----PRDIVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC-----HHHHccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8899999999999999876 66899999999999999755431 1222322 3334444 479999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 506 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 506 d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
|++.++++++..++... ..|+++.++.+++
T Consensus 368 ~~~~~~~~~~~a~~~~~--~~~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRAR--ARYTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCHHHHHHHHh
Confidence 99999999998887653 3489999988875
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=144.77 Aligned_cols=159 Identities=23% Similarity=0.376 Sum_probs=129.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------------
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------- 67 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-------------- 67 (619)
|..|..+++.|+..+|.-+|+.|+..+|.+.++|..||.+..+.++-..|+..++++++++|++-+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 345777777777778888888888778888888888887777777777777777777777655533
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHHcCCHHH
Q 007075 68 ---------------------------------------------------------------SLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 68 ---------------------------------------------------------------~~~~lg~~~~~~g~~~e 84 (619)
.+..||.+|+..|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 45556888888889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
|+.||+.||+.+|++...|+.||-.+..-.+.++|+..|.+|+++.|.+.++++| ++..++..|.+++|.+.+-..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN--lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN--LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh--hhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 788888889888877765543
No 68
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=2.7e-13 Score=157.83 Aligned_cols=133 Identities=18% Similarity=0.167 Sum_probs=125.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
+......|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34445569999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++.....
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 999999999999999999999999999999999999999999999998766544
No 69
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.53 E-value=3.5e-13 Score=143.92 Aligned_cols=206 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHH
Q 007075 325 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 400 (619)
Q Consensus 325 ~E~l~~lp~~~~--~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~ 400 (619)
.+++..+|++.. .|.|... ...+...+++++.++|+.++|+ .|..+.+++++.++. ++.+|+++|++...+.
T Consensus 168 ~~~i~vi~ng~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~ 243 (388)
T TIGR02149 168 PEKVHVIYNGIDTKEYKPDDG-NVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPE 243 (388)
T ss_pred cceEEEecCCCChhhcCCCch-HHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHH
Confidence 366777887431 1222110 0111223456777788999988 689999999988763 5778888876644556
Q ss_pred HHHHHHHHHHHcCCCCCcEEEc-CCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHH
Q 007075 401 VRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478 (619)
Q Consensus 401 ~~~~l~~~~~~~Gi~~~rv~f~-g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~ 478 (619)
..+.+++.+...+...++|+|. |.++ ..+...+|..+|++|-|+.+ ++|++++|||++|+|||+..... ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~-----~~e 317 (388)
T TIGR02149 244 VAEEVRQAVALLDRNRTGIIWINKMLP-KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG-----IPE 317 (388)
T ss_pred HHHHHHHHHHHhccccCceEEecCCCC-HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC-----HHH
Confidence 6788888888888765678775 5566 68899999999999999876 77999999999999999855321 112
Q ss_pred HHHhcCCCcccc--CCH------HHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 479 LLTKVGLKHLIA--KNE------DEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 479 ~l~~~gl~~~v~--~~~------~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
++. -|..+++. .|. +++++...++..|++.++++++..++.... .|+++.+++++.++|+++
T Consensus 318 ~i~-~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 318 VVV-DGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEE--EFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred Hhh-CCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhh
Confidence 222 23344443 345 789999999999999999999988876543 499999999999999976
No 70
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.53 E-value=1.9e-13 Score=143.12 Aligned_cols=259 Identities=16% Similarity=0.095 Sum_probs=163.8
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcch-hhccCCcceeEecccCC----CCCC-CCCccEEEecCCCCCCCccCC--Cc
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLG-MMACQPAPVQVTWIGYP----NTTG-LPTIDYRITDSLADPPETKQK--HV 325 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~-~~a~r~Apvq~~~~G~p----~ttg-~~~~Dy~i~d~~~~p~~~~~~--~~ 325 (619)
..+.+.|.+.++||++.-.....+..+. .......|+-+...++. .... ....|.+++-.-..-...... ..
T Consensus 86 ~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 165 (359)
T cd03823 86 AEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVANGLFA 165 (359)
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHHcCCCc
Confidence 4677888899999997654322111111 11223346555433321 1111 122355554220000000111 13
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHH
Q 007075 326 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 403 (619)
Q Consensus 326 E~l~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~ 403 (619)
+++..+|++.. .... .+ ... ..+++.++|+.++++ .|....+++++..+.. ++.+|+++|.+.. ..
T Consensus 166 ~~~~vi~n~~~-~~~~--~~-~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~----~~ 233 (359)
T cd03823 166 EKISVIRNGID-LDRA--KR-PRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLE----LE 233 (359)
T ss_pred cceEEecCCcC-hhhc--cc-ccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchh----hh
Confidence 56777776421 1111 11 110 245667788888887 6888899999988776 8999999997622 22
Q ss_pred HHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC--CCCchhHHHhhhcCCcEEeccCCccccchhHHHHH
Q 007075 404 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 481 (619)
Q Consensus 404 ~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~--~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~ 481 (619)
...... +.. ++|.|.|.++ ..+...+|+.+|+++.|+. .++|.+++|||++|+|||+...... ..++.
T Consensus 234 ~~~~~~---~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-----~e~i~ 303 (359)
T cd03823 234 EESYEL---EGD-PRVEFLGAYP-QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM-----AELVR 303 (359)
T ss_pred HHHHhh---cCC-CeEEEeCCCC-HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH-----HHHhc
Confidence 222111 555 7999999987 6899999999999999985 4778999999999999998654311 12222
Q ss_pred hcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 482 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 482 ~~gl~~~v~--~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
. |..+++. .|.+++++...++.+|++.++.+++..+++.. .+.++++++++|+
T Consensus 304 ~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 358 (359)
T cd03823 304 D-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRS------IEDQAEEYLKLYR 358 (359)
T ss_pred C-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhh------HHHHHHHHHHHhh
Confidence 2 3334443 56899999999999999999999998887643 2888999998886
No 71
>PLN02316 synthase/transferase
Probab=99.52 E-value=2.2e-13 Score=156.19 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=133.1
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCC-CCcEEEcCCcc
Q 007075 351 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 426 (619)
Q Consensus 351 ~~l~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~-~~rv~f~g~~~ 426 (619)
.+++ .+.+++++++|+ .|....+++++.++++ ++++|+|+|.|. +..++..++++++++|+. ++||.|.+..+
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3555 367889999999 6999999999999886 479999999762 335678899999999874 48999987643
Q ss_pred CcHHH-HHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEe-ccCCccccchhHHHHH-----------hcCCCcccc--
Q 007075 427 LNHDH-MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLT-----------KVGLKHLIA-- 490 (619)
Q Consensus 427 ~~~~~-~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt-~~g~~~~~r~~~~~l~-----------~~gl~~~v~-- 490 (619)
... ..+|+.+||||-||.+ +.|.|.+|||++|+|+|+ -.|. ... .+.. ..+..+++.
T Consensus 910 --e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGG-L~D----tV~d~d~~~~~~~~~g~~~tGflf~~ 982 (1036)
T PLN02316 910 --EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG-LFD----TVFDVDHDKERAQAQGLEPNGFSFDG 982 (1036)
T ss_pred --HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCC-cHh----hccccccccccccccccCCceEEeCC
Confidence 222 2689999999999987 779999999999986664 3331 100 0100 012344443
Q ss_pred CCHHHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 491 KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 491 ~~~~~y~~~a~~L~~d-~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
.|++++...+.+++.+ ++.+..+++..+..+. ..|+|++.+++++++|+++.
T Consensus 983 ~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 983 ADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHHh
Confidence 4788888888887776 3445556666666654 34999999999999999874
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.2e-13 Score=135.04 Aligned_cols=156 Identities=26% Similarity=0.268 Sum_probs=138.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
..+|--|+++++...|++.|++|++++|.+..+|+.||+.|.-++-..-|+-+|++|+++.|+++..|..||.+|.+.++
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID-----PDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
.++|+++|++++.....+..++..||.+|.++++.++|..+|++.++.. -++........++.-+.+.++++++.
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 9999999999999999999999999999999999999999999999843 12212223333677777777777665
Q ss_pred H
Q 007075 157 E 157 (619)
Q Consensus 157 ~ 157 (619)
.
T Consensus 528 ~ 528 (559)
T KOG1155|consen 528 Y 528 (559)
T ss_pred H
Confidence 4
No 73
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.51 E-value=5e-13 Score=140.51 Aligned_cols=170 Identities=18% Similarity=0.120 Sum_probs=130.8
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
..+..+++.++++ .|..+.+++++..+....|+.+|+++|.+... .......+++.+.. ++|+|.|.++ ..++
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~ 266 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGLG-DRVRFLGYVS-DEEL 266 (365)
T ss_pred CCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCCC-CeEEECCCCC-hhHH
Confidence 3455677778877 68999999999999999999999999865322 22333334677877 8999999998 5889
Q ss_pred HHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHH
Q 007075 432 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~ 510 (619)
...|..+|++|.|+.+ ++|.+++|||++|+|||+.....+...++ ..|. -+...|.+++++...++..|++.+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~ 340 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALR 340 (365)
T ss_pred HHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHH
Confidence 9999999999999876 67899999999999999865543322221 1111 123468999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 511 ANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 511 ~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
..+++..++.. ..|+++.+++.+.
T Consensus 341 ~~~~~~~~~~~---~~~sw~~~~~~~~ 364 (365)
T cd03809 341 EELRERGLARA---KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHH---HhCCHHHHHHHHh
Confidence 99998887543 3489999998775
No 74
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.50 E-value=1.1e-12 Score=138.22 Aligned_cols=163 Identities=12% Similarity=0.177 Sum_probs=121.8
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHH-HcCCCCCcEEEcCCccCcHHHHHhcc
Q 007075 360 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYS 436 (619)
Q Consensus 360 f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~-~~Gi~~~rv~f~g~~~~~~~~~~~~~ 436 (619)
+..++++ .|....+++++.++.. +.+|+++|.+...+. +.+.+. ..++. ++|+|.|.++ ..+....|.
T Consensus 196 i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~----~~~~~~~~~~~~-~~V~~~g~~~-~~~~~~~~~ 266 (363)
T cd04955 196 YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTP----YGKLLKEKAAAD-PRIIFVGPIY-DQELLELLR 266 (363)
T ss_pred EEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcch----HHHHHHHHhCCC-CcEEEccccC-hHHHHHHHH
Confidence 5567777 6888999999887643 789999997633323 333333 56776 8999999998 578899999
Q ss_pred cCcEeecCCCC--CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHH
Q 007075 437 LMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 514 (619)
Q Consensus 437 ~~Dv~Ldt~~~--~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr 514 (619)
.+|+++-|+.. +.|.+++|||++|+|||+........ ++ +-.+++....+.+.+.+.++.+|++.+.+++
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e-----~~---~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNRE-----VL---GDKAIYFKVGDDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccce-----ee---cCCeeEecCchHHHHHHHHHHhCHHHHHHHH
Confidence 99999888754 66899999999999999854321111 11 1133333334449999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 515 MSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 515 ~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
+..++... ..|+++.+++++++.|+
T Consensus 339 ~~~~~~~~--~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 339 KAARERIR--EKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 98887654 34999999999999884
No 75
>PLN00142 sucrose synthase
Probab=99.50 E-value=6.5e-13 Score=149.10 Aligned_cols=178 Identities=12% Similarity=0.014 Sum_probs=135.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCC-----CHH---HHHHHHHHHHHcCCCCCcEEEcCC
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CDS---VRHRFLSTLEQLGLESLRVDLLPL 424 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~-----~~~---~~~~l~~~~~~~Gi~~~rv~f~g~ 424 (619)
.+..++++++|+ .|+...+++++.++.+..++++|+|+|++.+ +.. ...++.+.+.+.|+. ++|.|+|.
T Consensus 571 ~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~ 649 (815)
T PLN00142 571 RKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAA 649 (815)
T ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCC
Confidence 345578899998 6999999999999877788999999987621 111 135678888999998 99999986
Q ss_pred ccCc---HHHHHhcc-cCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHH
Q 007075 425 ILLN---HDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYV 497 (619)
Q Consensus 425 ~~~~---~~~~~~~~-~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~ 497 (619)
..+. .+...++. .+|||+.|+.+ ++|.|++|||+||+|||+.... |..-+..-|..+++. .|+++++
T Consensus 650 ~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvG------G~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 650 QTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQG------GPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred cCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCC------CHHHHhcCCCcEEEeCCCCHHHHH
Confidence 4322 45555554 57999999877 7799999999999999974422 222222336667664 5788888
Q ss_pred HHHHH----hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 498 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 498 ~~a~~----L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
+...+ +..|++.+++++++.+++... .|+|+.++++++++-.
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Confidence 87765 457999999999998887643 4999999999998764
No 76
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.50 E-value=1.2e-12 Score=146.93 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=133.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCC-----C-H--HHHHHHHHHHHHcCCCCCcEEEcC
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----C-D--SVRHRFLSTLEQLGLESLRVDLLP 423 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~-----~-~--~~~~~l~~~~~~~Gi~~~rv~f~g 423 (619)
+.+..++++++|+ .|+...+++++.++....+++.|+|+|++.. + + ...+++.+.+.+.|+. ++|.|+|
T Consensus 547 d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG 625 (784)
T TIGR02470 547 DPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIG 625 (784)
T ss_pred CCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEcc
Confidence 3455678899998 6999999999988755567899999987532 1 1 1446788889999998 9999999
Q ss_pred CccCcHHHHHhc----ccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHH
Q 007075 424 LILLNHDHMQAY----SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEY 496 (619)
Q Consensus 424 ~~~~~~~~~~~~----~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y 496 (619)
...+..+...+| +.+|||+-|+.+ ++|.|++|||+||+|||+.... |..-+-.-|..+++. .|++++
T Consensus 626 ~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G------G~~EiV~dg~tGfLVdp~D~eaL 699 (784)
T TIGR02470 626 AQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG------GPLEIIQDGVSGFHIDPYHGEEA 699 (784)
T ss_pred CcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC------CHHHHhcCCCcEEEeCCCCHHHH
Confidence 753233333333 246899999977 8899999999999999974321 211122225566554 578899
Q ss_pred HHHHHHhh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 497 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 497 ~~~a~~L~----~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
++...++. .|++.+++++++.++++.. .|+|+.+++++.+...
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~--~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYE--KYTWKIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Confidence 88888764 7999999999998887543 4999999999998874
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=1.9e-12 Score=132.89 Aligned_cols=148 Identities=22% Similarity=0.275 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 11 MLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 86 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 86 (619)
.++.+.++..+.+++...+ ..+..|+++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567889999999996433 347789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 87 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 87 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
..|+++++++|++..++.++|.++...|++++|++.|+++++++|+++.... ........++.+++.+.+++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~---~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL---WLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999873211 11222345567777766644
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.1e-12 Score=118.23 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=114.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 19 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 19 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 98 (619)
+.|++++..+|++..+.+.+|.++...|++++|...++++++.+|++..++.++|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 99 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 99 ~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
++..++++|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999987643
No 79
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.49 E-value=4.8e-13 Score=143.91 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=131.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCc--eEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNS--RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 430 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a--~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~ 430 (619)
++.++|++++++ .|..+.+++++.++.+..|+. +++++|.| +..+.+++.+++.+.. ++|.|+|.++ ..+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~~-~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPEN-ISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCCC-ceEEEecCCC-hHH
Confidence 456778888887 699999999999999988864 45667766 5677888888888887 8999999998 578
Q ss_pred HHHhccc--CcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcc-cc--CCHHHHHHHHHHhh
Q 007075 431 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IA--KNEDEYVQLALQLA 504 (619)
Q Consensus 431 ~~~~~~~--~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~-v~--~~~~~y~~~a~~L~ 504 (619)
...+|.. +|+|+.|+.+ +.+++++|||++|+|||+..-.. ...++. -|..++ +. .|++++++...+++
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg-----~~e~i~-~~~~G~l~~~~~~~~~la~~I~~ll 375 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG-----TPEIVD-NGGNGLLLSKDPTPNELVSSLSKFI 375 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC-----cHHHhc-CCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 8888864 8899988876 66999999999999999744211 112232 243343 33 37899999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 007075 505 SDVTALANLRMSLRDLMSKSPVCDGQNFALGL 536 (619)
Q Consensus 505 ~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~l 536 (619)
.|++.+++++++.|+.... .|+++...+++
T Consensus 376 ~~~~~~~~m~~~ar~~~~~--~f~~~~~~~~~ 405 (407)
T cd04946 376 DNEEEYQTMREKAREKWEE--NFNASKNYREF 405 (407)
T ss_pred hCHHHHHHHHHHHHHHHHH--HcCHHHhHHHh
Confidence 9999999999999987654 48988877665
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.48 E-value=3.5e-12 Score=144.87 Aligned_cols=103 Identities=9% Similarity=-0.059 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+.+|.+....|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|++..++..++.++...|+
T Consensus 80 ~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 80 RRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
+++|+..+++++...|+++.++.
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~ 182 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIA 182 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHH
Confidence 77777777777766666655443
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.47 E-value=2.8e-12 Score=137.11 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVY 76 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg~~~ 76 (619)
+.+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666655432 2345566666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 77 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
...|++++|+.+++++++.+|+...+++.+|.++...|++++|++.++++++.+|++..... ..++..|...|+.+++.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL-PKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH-HHHHHHHHHcCCHHHHH
Confidence 66666666666666666666666666666666666666666666666666666655422111 12455566666666665
Q ss_pred HHHHH
Q 007075 157 EAHRD 161 (619)
Q Consensus 157 ~~~~~ 161 (619)
+.+++
T Consensus 270 ~~l~~ 274 (389)
T PRK11788 270 EFLRR 274 (389)
T ss_pred HHHHH
Confidence 55444
No 82
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.47 E-value=2.4e-12 Score=155.68 Aligned_cols=160 Identities=24% Similarity=0.255 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--------------ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 67 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 67 (619)
+.+|.++...|++++|+.+|+++++.+|++.. ....+|.++...|++++|+++|+++++++|++..
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 386 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSY 386 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 56778888888888888888888887776532 1234566777788888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------------
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------------------------------------- 109 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~-------------------------------------- 109 (619)
++..+|.++..+|++++|+++|+++++++|++..++..++.+
T Consensus 387 a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 387 AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 888888888888888888888888888888776665544433
Q ss_pred ----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 110 ----YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 110 ----~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
+...|++++|++.|+++++++|+++.++.. ++..|...|+++++...+++..
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~--LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYR--LAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 345677888888888888888887766555 6677777777777776666543
No 83
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.47 E-value=1.2e-12 Score=141.10 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=123.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHH------CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 425 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~------~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~ 425 (619)
+++..++++.+|+ .|..+.+++++..+.+. .|+.+|+++|.| +.++.+++.+++.|++ +.+.|.|++
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~ 303 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWL 303 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcC
Confidence 3455667777877 69999999999988753 488999999987 5688999999999997 666677788
Q ss_pred cCcHHHHHhcccCcEeecCCC----CCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHH
Q 007075 426 LLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLAL 501 (619)
Q Consensus 426 ~~~~~~~~~~~~~Dv~Ldt~~----~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~ 501 (619)
+ .++...+|..+|+++.+++ ++.+++++|||+||+|||+..... ...++ .-|..+++..|.+++++.+.
T Consensus 304 ~-~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~-----~~eiv-~~~~~G~lv~d~~~la~~i~ 376 (415)
T cd03816 304 S-AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKC-----IDELV-KHGENGLVFGDSEELAEQLI 376 (415)
T ss_pred C-HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCC-----HHHHh-cCCCCEEEECCHHHHHHHHH
Confidence 7 6899999999999985332 346889999999999999855321 12233 33566667789999999999
Q ss_pred HhhcC---HHHHHHHHHHHHHHh
Q 007075 502 QLASD---VTALANLRMSLRDLM 521 (619)
Q Consensus 502 ~L~~d---~~~~~~lr~~~r~~~ 521 (619)
+|.+| ++.+++|++..|+..
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhh
Confidence 99999 999999998887753
No 84
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.47 E-value=7.1e-13 Score=124.69 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=126.6
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHHH-CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 353 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 353 l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
.+++.++|+.++++ .|....+++++..+..+ .|+..|+++|.+ .....+...+...++. ++|+|.|.++ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLK-ENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCG-TTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccc-cccccccccc-cc
Confidence 45677889999988 69999999999999875 999999999954 5567788889999997 8999999987 68
Q ss_pred HHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcC
Q 007075 430 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 506 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d 506 (619)
++..+|+.+||++.|+.+ ++|++++|||++|+|||+.... +..-+..-+..+++. .|++++++.+.+++.|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~------~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIG------GNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESST------HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeecccc------CCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999987 8899999999999999986643 222222224455554 4679999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007075 507 VTALANLRMSLRDL 520 (619)
Q Consensus 507 ~~~~~~lr~~~r~~ 520 (619)
++.++.|++..|+|
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998864
No 85
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.45 E-value=3.7e-12 Score=149.90 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
+++.++...|++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|+++.++.++|.++...|+
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 3444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
.+|+..++++++..|+++..+..+|.++...|++++|+++|+++++.+|.++.++.+ ++..+...|+.+++.+.++
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH--LALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCCHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555554444444 4445555555555554444
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.45 E-value=5e-12 Score=152.93 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=138.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-------
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------- 75 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~------- 75 (619)
.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..++.+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 4577889999999999999999999999999999999999999999999999999999999998776555444
Q ss_pred -----------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 76 -----------------------------------YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 120 (619)
Q Consensus 76 -----------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 120 (619)
+...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 121 DAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 121 ~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
..++++++.+|+++.+++. ++..+...++.+++.+.++
T Consensus 516 ~~l~~al~~~P~~~~~~~a--~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYA--YGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHH--HHHHHHhCCCHHHHHHHHH
Confidence 9999999999999988766 4455556677766655443
No 87
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.45 E-value=7.2e-12 Score=133.97 Aligned_cols=160 Identities=20% Similarity=0.171 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 76 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 76 (619)
..++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++|+.+|+++++.+|++..++..+|.++
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence 4567777777777777777777777666542 24556777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHH
Q 007075 77 TVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 155 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a 155 (619)
...|++++|++.++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+.... ..++..+...|+.+++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~---~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL---LALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHhCCHHHH
Confidence 77777777777777777777665 3456677777777777777777777777777765332 2356666677777776
Q ss_pred HHHHHHHHH
Q 007075 156 FEAHRDWGK 164 (619)
Q Consensus 156 ~~~~~~~~~ 164 (619)
...+++..+
T Consensus 302 ~~~l~~~l~ 310 (389)
T PRK11788 302 QALLREQLR 310 (389)
T ss_pred HHHHHHHHH
Confidence 666655443
No 88
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.44 E-value=2.7e-12 Score=140.56 Aligned_cols=175 Identities=13% Similarity=0.060 Sum_probs=125.7
Q ss_pred CCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCccC
Q 007075 352 ALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILL 427 (619)
Q Consensus 352 ~l~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f-~g~~~~ 427 (619)
+++ ++.++|++++|+ .|..+.+++++.++++. +.+|+|+|.| .....+.+++..+++| +++.| .|. .
T Consensus 276 gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~- 346 (466)
T PRK00654 276 GLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D- 346 (466)
T ss_pred CCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-
Confidence 444 367789999998 69999999999998764 7899999876 3456778888888875 45654 554 2
Q ss_pred cHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhc-----CCCcccc--CCHHHHHHH
Q 007075 428 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-----GLKHLIA--KNEDEYVQL 499 (619)
Q Consensus 428 ~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~-----gl~~~v~--~~~~~y~~~ 499 (619)
.+....+|+.+|+||-|+.+ ++|++.+|||+||+|+|+........ ++..- +-.+++. .|++++++.
T Consensus 347 ~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e-----~v~~~~~~~~~~~G~lv~~~d~~~la~~ 421 (466)
T PRK00654 347 EALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLAD-----TVIDYNPEDGEATGFVFDDFNAEDLLRA 421 (466)
T ss_pred HHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccc-----eeecCCCCCCCCceEEeCCCCHHHHHHH
Confidence 23455789999999999988 77999999999999988643211111 01100 0234443 588888888
Q ss_pred HHHhhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 500 ALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 500 a~~L~~---d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
..+++. |++.+.+++++.. ...|++++++++++++|+++..
T Consensus 422 i~~~l~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 422 LRRALELYRQPPLWRALQRQAM-----AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHhcCHHHHHHHHHHHh-----ccCCChHHHHHHHHHHHHHHhh
Confidence 877765 6666655554432 2469999999999999998864
No 89
>PRK14099 glycogen synthase; Provisional
Probab=99.44 E-value=3.1e-12 Score=140.05 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=125.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcE-EEcCCccCcHHHH
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 432 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv-~f~g~~~~~~~~~ 432 (619)
+.++|++++|+ .|..+.+++++.++++. +.+|+++|.| .+..++.+++..++.+ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 56789999998 69999999999988753 6899999976 4456778887777764 455 68887 46777
Q ss_pred Hhc-ccCcEeecCCCC-CCchhHHHhhhcCC-cEEeccCCccccchhH--HHHHhcC-CCcccc--CCHHHHHHHHHH--
Q 007075 433 QAY-SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMAGSVHAHNVGV--SLLTKVG-LKHLIA--KNEDEYVQLALQ-- 502 (619)
Q Consensus 433 ~~~-~~~Dv~Ldt~~~-~g~~t~~eAl~~Gv-PvVt~~g~~~~~r~~~--~~l~~~g-l~~~v~--~~~~~y~~~a~~-- 502 (619)
.+| ..+|+||-||.+ ++|.+.+|||+||+ |||+-.|.. ..-+.. ......| -.+++. .|++++++.+.+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 766 579999999987 77999999999996 555533321 110000 0000001 234443 578888887765
Q ss_pred -hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 503 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 503 -L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
+..|++.+++++++.+. ..|+|++++++++++|++++.
T Consensus 443 ~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 78899888887776542 359999999999999999875
No 90
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.44 E-value=7.5e-12 Score=135.61 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=120.3
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEcCC
Q 007075 358 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPL 424 (619)
Q Consensus 358 ~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~-~~l~~~~~~~Gi~~------------~rv~f~g~ 424 (619)
.++.+.++..|....+++++.+++++.|+.+|+|+|.+ +.+ +.+++.+++.|+.. ..|.+.+.
T Consensus 234 ~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~ 309 (425)
T PRK05749 234 PVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT 309 (425)
T ss_pred cEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec
Confidence 34445566677777889999999988999999999876 555 78999999999851 13333332
Q ss_pred ccCcHHHHHhcccCcE-eecCCC-CCCchhHHHhhhcCCcEEeccCCccccchh--HHHHHhcCCCccccCCHHHHHHHH
Q 007075 425 ILLNHDHMQAYSLMDI-SLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAKNEDEYVQLA 500 (619)
Q Consensus 425 ~~~~~~~~~~~~~~Dv-~Ldt~~-~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~--~~~l~~~gl~~~v~~~~~~y~~~a 500 (619)
..+...+|+.+|| |+-++. .+||.+++|||+||+|||+.+.. +..+ ...+...|.- +...|.+++++..
T Consensus 310 ---~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~~-~~~~d~~~La~~l 382 (425)
T PRK05749 310 ---MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT---FNFKEIFERLLQAGAA-IQVEDAEDLAKAV 382 (425)
T ss_pred ---HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCCe-EEECCHHHHHHHH
Confidence 3588899999999 454443 47899999999999999974321 1111 1122222321 2257999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 501 LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 501 ~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
.+|++|++.+++++++.++..... .+.++++.+.+++.
T Consensus 383 ~~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~~ 420 (425)
T PRK05749 383 TYLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEPY 420 (425)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHh
Confidence 999999999999999998876543 24455555555543
No 91
>PRK14098 glycogen synthase; Provisional
Probab=99.44 E-value=3e-12 Score=140.35 Aligned_cols=172 Identities=15% Similarity=0.050 Sum_probs=127.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
++.++|++++|+ .|..+.+++++.+++. ++.+|+|+|.| ....++.+++..+++ +++|.|.|.++ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 466789999998 6999999999999875 48999999976 334677888887776 37999999876 46678
Q ss_pred HhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHh---cCCCcccc--CCHHHHHHHHHH---h
Q 007075 433 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK---VGLKHLIA--KNEDEYVQLALQ---L 503 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~---~gl~~~v~--~~~~~y~~~a~~---L 503 (619)
.+|+.+|+||-||.+ +.|.+.+|||++|+|+|+........ .+.. -+..+++. .|++++.+...+ +
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d-----~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVE-----TIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCce-----eeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 899999999999977 77999999999998777543211111 0110 02234443 578888877665 4
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 504 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 504 ~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
..|++.+++++++. + ...|+++..+++++++|++++
T Consensus 452 ~~~~~~~~~~~~~~---~--~~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 452 YHDEERWEELVLEA---M--ERDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HcCHHHHHHHHHHH---h--cCCCChHHHHHHHHHHHHHHh
Confidence 57887766655432 2 246999999999999999876
No 92
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=127.16 Aligned_cols=116 Identities=28% Similarity=0.471 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
-+-+-|.-+...++|++|+..|.+||+++|+++..|+|.+.+|.++|.++.|++..+.++.++|.+..+|..||.+|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34566777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 007075 114 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 149 (619)
Q Consensus 114 g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~ 149 (619)
|++++|++.|+++|+++|++...+.++-.+...+.+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888886666554444
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=5.8e-12 Score=118.36 Aligned_cols=165 Identities=21% Similarity=0.243 Sum_probs=139.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQ 79 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 79 (619)
..++.+|...|+.+.|.+.|++|+.++|++.++++|.|.-++.+|++++|...|++|+.. .+..+.++-|+|.|..++
T Consensus 73 ~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 73 LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence 457889999999999999999999999999999999999999999999999999999975 456678999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 80 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 80 g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
|+.+.|..+|+++++++|+.+.....++..+++.|++..|..++++....-+- .+..-.+...+--..|+.+. .
T Consensus 153 gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~--~A~sL~L~iriak~~gd~~~----a 226 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA--QAESLLLGIRIAKRLGDRAA----A 226 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc--cHHHHHHHHHHHHHhccHHH----H
Confidence 99999999999999999999999999999999999999999999998776653 33333333334444565443 3
Q ss_pred HHHHHHHHhhccC
Q 007075 160 RDWGKRFMRLYSQ 172 (619)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (619)
.+|..++.+.+|.
T Consensus 227 ~~Y~~qL~r~fP~ 239 (250)
T COG3063 227 QRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHhCCC
Confidence 4556666666554
No 94
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.5e-12 Score=132.82 Aligned_cols=160 Identities=23% Similarity=0.287 Sum_probs=122.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
...++...++++++...++++.... +.++..+..+|.++.+.|+.++|+++|+++++++|++..+...++.++...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 4456788999999999999987655 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
++++...++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++..... ++.++...|..++|.+..++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~--~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA--YADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH--HHHHHT--------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccc--cccccccccccccccccccc
Confidence 9999999999888888888899999999999999999999999999999999988776 78888999999998887766
Q ss_pred HHHH
Q 007075 162 WGKR 165 (619)
Q Consensus 162 ~~~~ 165 (619)
..+.
T Consensus 274 ~~~~ 277 (280)
T PF13429_consen 274 ALRL 277 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=127.12 Aligned_cols=115 Identities=25% Similarity=0.339 Sum_probs=109.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
+-|+-+++.++|.+|+..|.+||+++|.++-.|.|.|.+|.++|+++.|++-.++|++++|.+..+|..||.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 117 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~ 117 (619)
++|++.|+++|+++|++.....+|..+-.++++..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988877776655
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.9e-12 Score=131.35 Aligned_cols=131 Identities=18% Similarity=0.272 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
..+|.+|....+.++....|.+|..++|++++.|+..|.+++-++++++|+.-|+++++++|++..++..++.+.+++++
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
++++...|+.+.+..|+.++++...|.++..++++++|++.|.+|+++.|.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 777777777777777777777777777777777777777777777777776
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=1.4e-11 Score=138.49 Aligned_cols=147 Identities=12% Similarity=0.005 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 16 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 16 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 95 (619)
+++.-.......+|++++++.+||.+..+.|++++|+..++++++++|++..++.+++.++.+++++++|+..++++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33444444445689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 96 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 96 ~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
+|+++.+++.+|.++.++|++++|++.|++++..+|+++.++.+ ++..+...|+.++|...+++..+
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~--~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG--WAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888 67778889999998888776543
No 98
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=1.1e-11 Score=111.53 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=102.2
Q ss_pred HHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 25 FHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 103 (619)
Q Consensus 25 l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~ 103 (619)
..+. ++..+..+.+|..+++.|++++|+..|+.+..++|.+...|++||.++..+|+|++|+.+|.+++.++|+++.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 104 NNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 104 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.++|.|+...|+.++|.+.|+.++...-+
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987633
No 99
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.40 E-value=6.6e-12 Score=137.96 Aligned_cols=170 Identities=14% Similarity=0.037 Sum_probs=127.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
+.++|++++|+ .|..+.+++++.++.+. +.+|+++|.| .+...+.+++...+.+ +++.|.+..+ ..+...
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG--DPELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--CHHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 67889999998 79999999999998764 4999999976 3456677777776653 5788877765 455678
Q ss_pred hcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHh-----cCCCcccc--CCHHHHHHHHHHhhc
Q 007075 434 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-----VGLKHLIA--KNEDEYVQLALQLAS 505 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~-----~gl~~~v~--~~~~~y~~~a~~L~~ 505 (619)
+|+.+|++|-|+.+ +.|.+.+|||++|+|||+........ ++.. .+-.+++. .|++++++...+++.
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e-----~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLAD-----TVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccc-----eEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999987 77999999999999999744321111 1111 01334443 588899888877776
Q ss_pred ----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 506 ----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 506 ----d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
|++.+++++++.. ...|++++++++++++|+++
T Consensus 437 ~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 437 LYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHhC
Confidence 8887777766543 23699999999999999863
No 100
>PHA01630 putative group 1 glycosyl transferase
Probab=99.37 E-value=1.5e-11 Score=127.99 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=114.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
+.++++..+++ .|..+.++++|..+.++.|+.+++++|.+. ...++ .++. . +.+.++ .++...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~----~~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNM----LDPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcc----cchhh------cccc-c---eeccCC-HHHHHH
Confidence 45566666565 799999999999999889999999998542 11111 1333 2 234465 588999
Q ss_pred hcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhH---HHHHh------------cCCCccccCCHHHHH
Q 007075 434 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTK------------VGLKHLIAKNEDEYV 497 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~---~~l~~------------~gl~~~v~~~~~~y~ 497 (619)
+|+.+|||+-|+.+ ++|++++|||+||+|||+.....+..-+.. +++-. .+..-++..|.++..
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 99999999999977 669999999999999998654211110000 00000 011223455788888
Q ss_pred HHHHHhhcCH---HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 498 QLALQLASDV---TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 498 ~~a~~L~~d~---~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
+.+++++.|+ +.++.++.+.+.. ...|+++.++++++++|++
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~~~---~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAILY---RENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhc
Confidence 9999999873 4444444443332 3459999999999999974
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.37 E-value=3.8e-11 Score=115.45 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=124.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 346888899888655443221 2211 11126778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLY-RDAGS--ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~-~~~g~--~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
|+.+|+++++++|+++.++.++|.++ ...|+ +++|.+.++++++.+|++..++.+ ++..+...|++++|...+++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~--LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML--LASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999975 67787 599999999999999999998877 88888999999999888776
Q ss_pred HHHH
Q 007075 162 WGKR 165 (619)
Q Consensus 162 ~~~~ 165 (619)
..+.
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 5443
No 102
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.36 E-value=3.3e-11 Score=128.61 Aligned_cols=265 Identities=11% Similarity=0.087 Sum_probs=157.3
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcch--hhcc------CCcceeEecccCC---CCCCCCCccEEEecCCCCCCC--c
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLG--MMAC------QPAPVQVTWIGYP---NTTGLPTIDYRITDSLADPPE--T 320 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~--~~a~------r~Apvq~~~~G~p---~ttg~~~~Dy~i~d~~~~p~~--~ 320 (619)
..+.+.|++.++||+|.. |...++.. ++.. ...|+-+..-.+. ...-.+.+|++++-.-..-.. .
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~ 167 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK 167 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence 578899999999999983 43323221 2211 1345432211111 122346788887522000000 0
Q ss_pred cCCCccceEEcCCCcc-ccCCCC-CCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHH----HCCCce-EEE
Q 007075 321 KQKHVEELIRLPECFL-CYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSR-LVV 391 (619)
Q Consensus 321 ~~~~~E~l~~lp~~~~-~~~p~~-~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~----~~P~a~-l~l 391 (619)
.+.-.+++...+...- .|.+.. .....+...+++++..+++.+++. .|....+++.+..++. ..|+.+ +++
T Consensus 168 ~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi 247 (382)
T PLN02605 168 RGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVI 247 (382)
T ss_pred cCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEE
Confidence 1223467776654221 122111 111122345677777777777765 6777788888876652 246665 455
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCcc
Q 007075 392 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH 471 (619)
Q Consensus 392 ~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~ 471 (619)
+|.+ +..++++++ .... ++|.|+|+++ +...+|+.+|+++.+ +||.|++|||+||+|||+..--..
T Consensus 248 ~G~~---~~~~~~L~~----~~~~-~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pg 313 (382)
T PLN02605 248 CGRN---KKLQSKLES----RDWK-IPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPG 313 (382)
T ss_pred ECCC---HHHHHHHHh----hccc-CCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCc
Confidence 5643 234444443 3333 6799999964 677888999999963 367899999999999997652111
Q ss_pred ccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 007075 472 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 538 (619)
Q Consensus 472 ~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d-~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~ 538 (619)
....++..+...|.. ++..|++++.+...++..| ++.+++|++..++... ..+.+.+++.+.+
T Consensus 314 qe~gn~~~i~~~g~g-~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~ 377 (382)
T PLN02605 314 QEEGNVPYVVDNGFG-AFSESPKEIARIVAEWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHE 377 (382)
T ss_pred cchhhHHHHHhCCce-eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 111234445555654 3458999999999999998 9999999998887532 2355666666554
No 103
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.36 E-value=4.1e-11 Score=141.06 Aligned_cols=158 Identities=24% Similarity=0.291 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
.+|.++...|++++|+.+|+++++.+|++..+++++|.++...|++++|++.|+++++.+|++..++..++.++...|++
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
++|+..++++++.+|.+...+..++.++...|++++|+..++++++..|.+...+.. ++..+...|+++++.+.+++.
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM--LGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544433 445555555555555544443
No 104
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=5.9e-11 Score=122.15 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=130.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--H
Q 007075 7 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--D 83 (619)
Q Consensus 7 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~--~ 83 (619)
++...+++++|+..+.++++++|++..+|...+.++..++ ++++++..++++++.+|++.++|...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 4566789999999999999999999999999999999998 689999999999999999999999999999998874 7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 145 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~ 145 (619)
+++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..++.++.+...
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999776554
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.35 E-value=5e-11 Score=114.50 Aligned_cols=152 Identities=20% Similarity=0.133 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
+++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..++|++..+|..+|.+|.+.|++
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 45667777787778888878877778888888777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
++|...|.+++++.|+.+.+.+|+|..|.-.|+++.|..++.++....+.+..+..| +++.....|+.+++.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N--LAl~~~~~g~~~~A~ 222 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN--LALVVGLQGDFREAE 222 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH--HHHHHhhcCChHHHH
Confidence 888888888888888888888888888888888888888888887777777777777 455556666665543
No 106
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.35 E-value=2.7e-11 Score=127.76 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=140.0
Q ss_pred CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH
Q 007075 324 HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 399 (619)
Q Consensus 324 ~~E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~ 399 (619)
..+++..+|++... +.+...... .......++.++|+.++++ .|....+++++.++... |+.+|+++|.+
T Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~---- 259 (394)
T cd03794 186 PPEKISVIPNGVDLELFKPPPADES-LRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG---- 259 (394)
T ss_pred CcCceEEcCCCCCHHHcCCccchhh-hhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----
Confidence 35678888864321 111111000 1112344567788888887 68999999999998877 99999999976
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCC------chhHHHhhhcCCcEEeccCCcccc
Q 007075 400 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAH 473 (619)
Q Consensus 400 ~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g------~~t~~eAl~~GvPvVt~~g~~~~~ 473 (619)
+....+.+.....++ ++|.|.|.++ ..++...|..+|+++.|+..++ +++++|||++|+|||+.......
T Consensus 260 ~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~- 335 (394)
T cd03794 260 PEKEELKELAKALGL--DNVTFLGRVP-KEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA- 335 (394)
T ss_pred ccHHHHHHHHHHcCC--CcEEEeCCCC-hHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch-
Confidence 445566665666666 4799999887 6889999999999998887642 55689999999999986653211
Q ss_pred chhHHHHHhcCCCcccc-CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 007075 474 NVGVSLLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 536 (619)
Q Consensus 474 r~~~~~l~~~gl~~~v~-~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~l 536 (619)
.++...+..-++. .|.+++++...+++.|++.++++++..++... ..|+++.+++++
T Consensus 336 ----~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 393 (394)
T cd03794 336 ----ELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVE--EKFSREKLAERL 393 (394)
T ss_pred ----hhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--HhhcHHHHHHhc
Confidence 1222212222333 48999999999999999999999999887654 348999988775
No 107
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.4e-11 Score=126.34 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=149.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..|.-++-.|++-.|.+.|++++.++|.+...|..+|.+|.+..+.++-...|.+|.+++|.+++.|+..|.+++-++++
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH
Confidence 35666777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
++|+..|++++.++|++.-++..++.++++++++++++..|+.+.+.-|+.++.+.. ++.++..+++++++.+.+...
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~--fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL--FAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHhhHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998766 788888999999888877654
Q ss_pred H
Q 007075 163 G 163 (619)
Q Consensus 163 ~ 163 (619)
.
T Consensus 489 i 489 (606)
T KOG0547|consen 489 I 489 (606)
T ss_pred H
Confidence 3
No 108
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.35 E-value=4.4e-11 Score=127.64 Aligned_cols=268 Identities=10% Similarity=0.086 Sum_probs=155.2
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCC--cceeEec--ccCCCCCCCCCccEEEecCCCCCCC--ccCCCccc
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTW--IGYPNTTGLPTIDYRITDSLADPPE--TKQKHVEE 327 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~--~G~p~ttg~~~~Dy~i~d~~~~p~~--~~~~~~E~ 327 (619)
..+.+.|++.++||+|...+.. +...+.+.+. -|+-... .+.+...-.+.+|.+++-.-..-.. ..+.-.++
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~k 171 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPEQ 171 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChhH
Confidence 5788999999999999642222 1111122222 2432111 2222222345677776522000000 01123456
Q ss_pred eEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHH
Q 007075 328 LIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 403 (619)
Q Consensus 328 l~~lp~~~~-~~~p~~~~~~~~~~~~l~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~ 403 (619)
+..+++... .|.+.......+...++++ ..+++...++. .|....+++.+ .+.|+.++++++++ ++..++
T Consensus 172 i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~~~~~ 245 (380)
T PRK13609 172 VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NEALKQ 245 (380)
T ss_pred EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CHHHHH
Confidence 665533110 1221111111122234543 44444444554 35545555544 34588998877532 235677
Q ss_pred HHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhc
Q 007075 404 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 483 (619)
Q Consensus 404 ~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~ 483 (619)
.+++..+..+ ++|+|+|.++ +...+|..+|+++. .+||.|++|||++|+|||+.....-.....+..+...
T Consensus 246 ~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~ 316 (380)
T PRK13609 246 SLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK 316 (380)
T ss_pred HHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC
Confidence 8887776654 6899999964 56678889999983 3578899999999999998531100111223344444
Q ss_pred CCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 484 GLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 484 gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
|.. ++..|.+++.+...++.+|++.++++++..++. ...++.+.+++.+++.+..
T Consensus 317 G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~---~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 317 GAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSL---YLPEPADHIVDDILAENHV 371 (380)
T ss_pred CcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHhhhh
Confidence 553 345899999999999999999999999887753 2336888998888877654
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.33 E-value=2.6e-11 Score=109.24 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=94.3
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
+|.+|..++..|++++|+..|+.+..++|.+...|++||.++..+|++++|+.+|.+|+.++|+++.+++++|.++...|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 007075 81 KMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~ 98 (619)
+.+.|.+.|+.++...-.
T Consensus 118 ~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 118 NVCYAIKALKAVVRICGE 135 (157)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988743
No 110
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.33 E-value=3.4e-11 Score=126.92 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=106.9
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhccc
Q 007075 360 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 437 (619)
Q Consensus 360 f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~ 437 (619)
+..++++ .|..+.+++++.+ .| .+|+++|.+ +..+.+++ +.. ++|+|+|.++ .++...+|..
T Consensus 198 il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~~-~~V~~~g~~~-~~~~~~~~~~ 261 (351)
T cd03804 198 YLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KAG-PNVTFLGRVS-DEELRDLYAR 261 (351)
T ss_pred EEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hcC-CCEEEecCCC-HHHHHHHHHh
Confidence 4456666 6888888888765 45 899999976 44445444 454 8999999998 6889999999
Q ss_pred CcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHHHH
Q 007075 438 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRM 515 (619)
Q Consensus 438 ~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~L~~d~~~~~~lr~ 515 (619)
+|+++.|+..++|++++|||+||+|||+........ ++.. |..+++ ..|++++++.+..+++|++ .+++
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e-----~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~ 332 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALE-----TVID-GVTGILFEEQTVESLAAAVERFEKNED---FDPQ 332 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcc-----eeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHH
Confidence 999999888788999999999999999865321111 1111 333433 3688999999999999984 2334
Q ss_pred HHHHHhhcCCCCChHHHHHHH
Q 007075 516 SLRDLMSKSPVCDGQNFALGL 536 (619)
Q Consensus 516 ~~r~~~~~~~~~~~~~~~~~l 536 (619)
.++++. ..|++++|.+++
T Consensus 333 ~~~~~~---~~~~~~~~~~~~ 350 (351)
T cd03804 333 AIRAHA---ERFSESRFREKI 350 (351)
T ss_pred HHHHHH---HhcCHHHHHHHh
Confidence 444332 138899988775
No 111
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.33 E-value=9.1e-11 Score=135.99 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=142.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
..+..-.|++++|+..++++...+|....++.++|.++...|++++|+++|+++++++|+++.++..++.++...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 35667789999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
|+..++++++.+|++.. +..+|.++...|++++|+..|+++++++|++..++.. ++..+...+..+++++.++.
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~--la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE--YVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHCCChHHHHHHHHh
Confidence 99999999999999999 9999999999999999999999999999999988876 56666677777777766553
No 112
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.33 E-value=7.4e-11 Score=136.76 Aligned_cols=161 Identities=13% Similarity=0.057 Sum_probs=144.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--------------- 64 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~--------------- 64 (619)
+|.++...|++++|+.+|+++++.+|.+ ......++.++.+.|++++|++.++++.+..|.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 6889999999999999999999888766 456788888899999999999999999998763
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007075 65 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 144 (619)
Q Consensus 65 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~ 144 (619)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++...... +++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHH
Confidence 235778899999999999999999999999999999999999999999999999999999999999999887766 677
Q ss_pred HHhhcCCcHHHHHHHHHHHHHH
Q 007075 145 NYINEGHDDKLFEAHRDWGKRF 166 (619)
Q Consensus 145 ~~~~~g~~~~a~~~~~~~~~~~ 166 (619)
.++..++++++.+.+++..+..
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC
Confidence 8889999999988888776553
No 113
>PHA01633 putative glycosyl transferase group 1
Probab=99.32 E-value=3.6e-11 Score=123.98 Aligned_cols=162 Identities=20% Similarity=0.196 Sum_probs=111.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcC---Ccc
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LIL 426 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g---~~~ 426 (619)
+.++|++++|+ .|..+.++++|.++.++.|+ .+|+++|.+ .++++++. ++|+|+| .++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------------~~~~l~l~-~~V~f~g~~G~~~ 213 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------------QFTQLEVP-ANVHFVAEFGHNS 213 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------------HHHHcCCC-CcEEEEecCCCCC
Confidence 45678899987 79999999999999988886 477777521 24567786 8999984 544
Q ss_pred CcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchh--HHHH----------H-hcCCCccc-cC
Q 007075 427 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLL----------T-KVGLKHLI-AK 491 (619)
Q Consensus 427 ~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~--~~~l----------~-~~gl~~~v-~~ 491 (619)
..+...+|+.+|+||-|+.+ ++|.+++|||+||+|||+.....+..-+| ..+| . ..|...++ ..
T Consensus 214 -~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~ 292 (335)
T PHA01633 214 -REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKF 292 (335)
T ss_pred -HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCC
Confidence 57889999999999999976 77999999999999999864332222122 1111 0 11221122 24
Q ss_pred CHHHHHHHHHHh--hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 492 NEDEYVQLALQL--ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 492 ~~~~y~~~a~~L--~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
|++++++...++ ..|++.+ ++.++++. ..||++.+.++++
T Consensus 293 d~~~la~ai~~~~~~~~~~~~---~~~~~~~a---~~f~~~~~~~~~~ 334 (335)
T PHA01633 293 QIEDMANAIILAFELQDREER---SMKLKELA---KKYDIRNLYTRFL 334 (335)
T ss_pred CHHHHHHHHHHHHhccChhhh---hHHHHHHH---HhcCHHHHHHHhh
Confidence 888888887776 3344333 44445432 2389999888876
No 114
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.5e-11 Score=123.33 Aligned_cols=159 Identities=23% Similarity=0.341 Sum_probs=120.8
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------------------ 62 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~------------------ 62 (619)
|+..|.-|+..|++.+|..+|-++..++|....+|..+|..+.-.++.++|+.+|.+|-++-
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 56778888888888888888888888888888888888877777777777666666666554
Q ss_pred ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHH
Q 007075 63 ----------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLA 119 (619)
Q Consensus 63 ----------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-------~~~~a~~~Lg~~~~~~g~~~eA 119 (619)
|.++-.+..+|.+.+..+.|.+|..+|++++..-+ .....+.|||.++++++++++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 55555555555555555556666666655552211 1233578999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 120 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 120 ~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+.+|+++|.+.|.+...+.. ++.+|...|+.+.|.+.+.+
T Consensus 475 I~~~q~aL~l~~k~~~~~as--ig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHAS--IGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHcCCCchhHHHH--HHHHHHHhcChHHHHHHHHH
Confidence 99999999999999998877 78888999999988877654
No 115
>PLN02789 farnesyltranstransferase
Probab=99.31 E-value=1.2e-10 Score=119.93 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=129.2
Q ss_pred CHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007075 1 MYNLGVAYGEML-KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLGVVYT 77 (619)
Q Consensus 1 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 77 (619)
|+..+.++...| ++++++.+++++++.+|++..+|+..+.++...++. ++++++++++++++|++..+|...+.++.
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 356788888888 689999999999999999999999999999998874 78899999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007075 78 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSI----SLAIDAYEQCLKIDPDSRNAGQNRLL 142 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~---g~~----~eA~~~~~~al~~~P~~~~a~~~~~l 142 (619)
..|++++|++++.++++.+|.+..+|+..+.++... |.+ ++++++..++++++|++..+|.++..
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 999999999999999999999999999999998776 333 57889999999999999999988433
No 116
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.30 E-value=4.4e-11 Score=131.58 Aligned_cols=169 Identities=16% Similarity=0.037 Sum_probs=122.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
++.++|+.++|+ .|..+.+++++.++.+. +.+|+++|.| .+...+.+++...+. .++++|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 567789999998 69999999999988764 3899999977 445667777766665 47888766654 45556
Q ss_pred HhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCC------Ccccc--CCHHHHHHHHHHh
Q 007075 433 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL------KHLIA--KNEDEYVQLALQL 503 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl------~~~v~--~~~~~y~~~a~~L 503 (619)
.+|+.+|++|-|+.+ ++|.+.+|||++|+|||+........-+. . |. .+++. .|++++++.+.++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~-----~-~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVI-----D-YNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEe-----C-CcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 789999999999977 77999999999999999754322211111 1 11 34442 5788888887776
Q ss_pred hc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 504 AS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 504 ~~---d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
.. +++.+.+++++..+ ..|+++.+++++++.|++
T Consensus 440 l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYRS 476 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHhC
Confidence 64 66666655554432 349999999999999963
No 117
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.29 E-value=1.3e-10 Score=124.33 Aligned_cols=266 Identities=12% Similarity=0.102 Sum_probs=158.9
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhh-ccC--CcceeEecccC--CCCCCCCCccEEEecCCCCCCCcc------C
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMM-ACQ--PAPVQVTWIGY--PNTTGLPTIDYRITDSLADPPETK------Q 322 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~-a~r--~Apvq~~~~G~--p~ttg~~~~Dy~i~d~~~~p~~~~------~ 322 (619)
..+.+.|++.++||+|.. |...+ +..+ +.+ .-|+-.....+ ......+.+|++++-. ++.. +
T Consensus 94 ~~l~~~l~~~kPDvVi~~--~p~~~-~~~l~~~~~~~iP~~~v~td~~~~~~w~~~~~d~~~v~s----~~~~~~l~~~g 166 (391)
T PRK13608 94 NKLINLLIKEKPDLILLT--FPTPV-MSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYYVAT----KETKQDFIDVG 166 (391)
T ss_pred HHHHHHHHHhCcCEEEEC--CcHHH-HHHHHHhcCCCCCEEEEeCCCCcccccccCCCCEEEECC----HHHHHHHHHcC
Confidence 578899999999999873 33221 1111 111 23552111112 1112234566665421 1111 2
Q ss_pred CCccceEEcCCCcc-ccCCCCCCCCCCCCCCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCC
Q 007075 323 KHVEELIRLPECFL-CYTPSPEAGPVCPTPALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 398 (619)
Q Consensus 323 ~~~E~l~~lp~~~~-~~~p~~~~~~~~~~~~l~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~ 398 (619)
.-.|++...+.... .|.+.......+...+++ +..+++.+.|++ .|....+++.+ ++..|+.++++++++ +
T Consensus 167 i~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~--~ 241 (391)
T PRK13608 167 IDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGK--S 241 (391)
T ss_pred CCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCC--C
Confidence 23466665432110 111111100111123444 344445556666 36666676654 445688888766432 2
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHH
Q 007075 399 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 478 (619)
Q Consensus 399 ~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~ 478 (619)
+..++++++.+ +.. ++|+|.|++ .+...+|+.+|+++. -+||.|+.|||++|+|||+..-..-.....+-
T Consensus 242 ~~l~~~l~~~~---~~~-~~v~~~G~~---~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~ 311 (391)
T PRK13608 242 KELKRSLTAKF---KSN-ENVLILGYT---KHMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENAL 311 (391)
T ss_pred HHHHHHHHHHh---ccC-CCeEEEecc---chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHH
Confidence 23445555433 333 689999985 467788999999984 25788999999999999986421111234455
Q ss_pred HHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 479 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 479 ~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
++...|.. +++.|.+++++...+|.+|++.++++++..++. ...++.+.+++.+++.+..+-+
T Consensus 312 ~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~---~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 312 YFEEKGFG-KIADTPEEAIKIVASLTNGNEQLTNMISTMEQD---KIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHhCCcE-EEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHhhhhhh
Confidence 66666765 456799999999999999999999999998874 2348899999999988776544
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.9e-11 Score=124.69 Aligned_cols=139 Identities=25% Similarity=0.419 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC---CHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK----PN---FSQSLNNLGV 74 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~----p~---~~~~~~~lg~ 74 (619)
..+|.-|+.+++++.|..+|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..- +. -...+.|||.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 5689999999999999999999999999999999999999999999999999999999432 22 2346899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
++.+++++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.++|++..+..-+
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997655443
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=126.90 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007075 14 FDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 91 (619)
Q Consensus 14 ~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 91 (619)
+..-.+.|-.+....| .+++++..||.+|...|+|++|++||+.||+.+|++...|+.||..+....+.++|+..|.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 4455667777777888 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 92 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 92 al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
|+++.|++..+++|||..|+.+|.|+||+++|-.||.+.+.
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999998765
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=7e-11 Score=124.23 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007075 36 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 115 (619)
Q Consensus 36 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~ 115 (619)
...|..++..|++++|+++|+++++++|++..+++++|.+|..+|++++|+..++++++++|+++.+++++|.+|..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 116 ISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 116 ~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
+++|+..|+++++++|++..+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6666666666666666666655543
No 121
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.28 E-value=1e-11 Score=126.72 Aligned_cols=129 Identities=24% Similarity=0.292 Sum_probs=102.0
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
|+.+|.++.+.|+.++|+.+|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++...|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 35688999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
++++|+.+|+++++.+|+++..+..+|.++...|+.++|...++++++.
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998753
No 122
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.28 E-value=5.3e-11 Score=127.64 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=105.8
Q ss_pred CCCeEEEecCCC----CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHH
Q 007075 355 NGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 430 (619)
Q Consensus 355 ~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~ 430 (619)
.+..+++.+++. .|....+++++..+ .++.+|+++|.+. + .. .++|.++|...+..+
T Consensus 239 ~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~---~-~~------------~~~v~~~g~~~~~~~ 299 (405)
T PRK10125 239 QGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFS---P-FT------------AGNVVNHGFETDKRK 299 (405)
T ss_pred CCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCC---c-cc------------ccceEEecCcCCHHH
Confidence 344557777762 36678888888764 3678999999751 1 00 256888898766678
Q ss_pred HHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc--CCHHHHHHHHHHhhcCH
Q 007075 431 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDV 507 (619)
Q Consensus 431 ~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~L~~d~ 507 (619)
...+|+.+|+|+-|+.+ +.|++++|||+||+|||+..-... .-++.. + .++++ .|.+++++ +.++
T Consensus 300 l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~-----~Eiv~~-~-~G~lv~~~d~~~La~-----~~~~ 367 (405)
T PRK10125 300 LMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAA-----REVLQK-S-GGKTVSEEEVLQLAQ-----LSKP 367 (405)
T ss_pred HHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCCh-----HHhEeC-C-cEEEECCCCHHHHHh-----ccCH
Confidence 89999999999999977 889999999999999998543210 112211 2 34443 46666664 2455
Q ss_pred HHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 508 TALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 508 ~~~~~-lr---~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
..+++ ++ +..|++. ...|+.+.++++++++|+++
T Consensus 368 ~~~~~~~~~~~~~~r~~~--~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 368 EIAQAVFGTTLAEFSQRS--RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHHHHhhhhHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 55443 22 3344443 34599999999999999863
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=118.74 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..+.++..++++++|.++|+.+++.+|.+.++...+|..|+..++.+-|+.+|++.+++.-.+++.++|+|.|++..+++
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~---~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
+-++..|++|+....+ -.++|+|+|.+....|++.-|..+|+-++..++++.++..| ++....+.|+.+++...+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN--LavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN--LAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh--HHHHHhhcCchHHHHHHH
Confidence 8888888888877442 35788888888888888888888888888888888888888 666667888877765554
Q ss_pred H
Q 007075 160 R 160 (619)
Q Consensus 160 ~ 160 (619)
.
T Consensus 453 ~ 453 (478)
T KOG1129|consen 453 N 453 (478)
T ss_pred H
Confidence 4
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.25 E-value=1.5e-10 Score=114.90 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=116.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDR--------DNLDKAVECYQMALSIKPNFSQSL- 69 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~- 69 (619)
+.+|.++...|++++|+..|+++++.+|++.. +++.+|.++... |++++|++.|+++++.+|++..++
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 67899999999999999999999999998765 799999999876 889999999999999999986532
Q ss_pred ----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 70 ----------------NNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 130 (619)
Q Consensus 70 ----------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 130 (619)
..+|..+...|++++|+..++++++..|+. +.+++.+|.++..+|++++|..+++......
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 367888999999999999999999997764 5899999999999999999999888776655
Q ss_pred C
Q 007075 131 P 131 (619)
Q Consensus 131 P 131 (619)
|
T Consensus 234 ~ 234 (235)
T TIGR03302 234 P 234 (235)
T ss_pred C
Confidence 4
No 125
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=4.2e-10 Score=110.52 Aligned_cols=163 Identities=20% Similarity=0.194 Sum_probs=142.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----SQSLNNLGVVY 76 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~~ 76 (619)
+.||.-|+..|-++.|+..|....+...--..+...|..+|....+|++|++..++..++.+.. ++.++.|+..+
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 6789999999999999999999887655567799999999999999999999999999998764 45789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 77 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
....+.+.|...+++|++.+|++..+-..+|.++...|+|+.|++.++.+++.||+...-... .+..+|...|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~-~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE-MLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997654443 3667888899988777
Q ss_pred HHHHHHHHH
Q 007075 157 EAHRDWGKR 165 (619)
Q Consensus 157 ~~~~~~~~~ 165 (619)
..+....+.
T Consensus 270 ~fL~~~~~~ 278 (389)
T COG2956 270 NFLRRAMET 278 (389)
T ss_pred HHHHHHHHc
Confidence 666655443
No 126
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.23 E-value=7.4e-10 Score=121.64 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=126.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
...|+.++..|++++|+..+.++++.+|.++.+|+.||.+|.++|+.+++....-.|-.++|.+.+.|..++....++|.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 131 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 131 (619)
+++|.-+|.+|++.+|.+.......+.+|.+.|+...|+..|.++++..|
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999
No 127
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=2.9e-10 Score=122.31 Aligned_cols=167 Identities=26% Similarity=0.303 Sum_probs=139.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNF 65 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~~ 65 (619)
.++|..|...|+|++|+..++++++. .|.-.....++|.+|..++++.+|+.+|++|+.+ +|..
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 35899999999999999999999998 4555666677999999999999999999999986 4555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q 007075 66 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID-----PD 132 (619)
Q Consensus 66 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----P~ 132 (619)
+.++.+||.+|...|++++|..++++|+++.. .-...+.+++.++..++++++|+.++++++++- ++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 56899999999999999999999999998742 334568889999999999999999999998762 23
Q ss_pred C-HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q 007075 133 S-RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 168 (619)
Q Consensus 133 ~-~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~ 168 (619)
+ ..+...--++..|...|+++++.+.+++..++..+
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3 22223333889999999999999999988777544
No 128
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=121.33 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=153.6
Q ss_pred HHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCC------CCCCccEEEecCCCCCCCccCCCccce
Q 007075 255 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT------GLPTIDYRITDSLADPPETKQKHVEEL 328 (619)
Q Consensus 255 ~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~tt------g~~~~Dy~i~d~~~~p~~~~~~~~E~l 328 (619)
.+.+.|++.++||++..+.++. -.+.++.+...+-+.+..+..-. ..+..|.+++.. +.........++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~i 156 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPKA 156 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCCE
Confidence 5677899999999988764442 33334344333333222221101 122345444321 110001234677
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHHHCCCceEEEeccCCCCHHHHHHH
Q 007075 329 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHRF 405 (619)
Q Consensus 329 ~~lp~~~~~~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l 405 (619)
..+|+.... .... .........++++..+++.+++. .|....++ +++.++... | .+++++|.+ . .+.+
T Consensus 157 ~vi~n~v~~-~~~~-~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g----~-~~~~ 227 (357)
T PRK00726 157 VVTGNPVRE-EILA-LAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKG----D-LEEV 227 (357)
T ss_pred EEECCCCCh-Hhhc-ccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCC----c-HHHH
Confidence 778764321 1000 00111122344455566667665 34333444 777666443 4 456677766 2 2455
Q ss_pred HHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccc---cchhHHHHHh
Q 007075 406 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTK 482 (619)
Q Consensus 406 ~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~---~r~~~~~l~~ 482 (619)
.+..+ .|+. |.|.|++ .++..+|..+|+++-+ +|++|++|||++|+|||+.+..... ....+..+..
T Consensus 228 ~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 228 RAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred HHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 55555 7764 9999985 5788889999999954 3578999999999999986532111 1112445666
Q ss_pred cCCCcccc-CC--HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 483 VGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 483 ~gl~~~v~-~~--~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
.|..-++. .| ++++++...++.+|++.++++++..++.. ..++.+++++.+++..+
T Consensus 298 ~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 298 AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 67654443 34 89999999999999999999999887652 34778888877776543
No 129
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.22 E-value=1.7e-10 Score=125.65 Aligned_cols=173 Identities=16% Similarity=0.071 Sum_probs=121.4
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCC-CCHH----HHHHHHHHHHHcCCC-----CC
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDS----VRHRFLSTLEQLGLE-----SL 417 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~-~~~~----~~~~l~~~~~~~Gi~-----~~ 417 (619)
..+..++++++|+ .|..+.+++++.+++++.|+ .+|+++|.+. .+.+ +++.+++.+.+.+.. -.
T Consensus 261 ~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~ 340 (460)
T cd03788 261 LGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWT 340 (460)
T ss_pred cCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCce
Confidence 3456678888998 69999999999999999997 5688886542 2222 344444444343221 12
Q ss_pred cEEE-cCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCc----EEeccCCccccchhHHHHHhcCCCcccc-
Q 007075 418 RVDL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA- 490 (619)
Q Consensus 418 rv~f-~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvP----vVt~~g~~~~~r~~~~~l~~~gl~~~v~- 490 (619)
.|+| .|.++ ..+..++|+.+|||+.|+.. +.|++++|||+||+| ||+... .|.+-. +.++++.
T Consensus 341 ~v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~------~G~~~~---~~~g~lv~ 410 (460)
T cd03788 341 PVRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEF------AGAAEE---LSGALLVN 410 (460)
T ss_pred eEEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecc------ccchhh---cCCCEEEC
Confidence 3554 46666 68999999999999999977 669999999999999 654221 122111 3344443
Q ss_pred -CCHHHHHHHHHHhhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 007075 491 -KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLEST 539 (619)
Q Consensus 491 -~~~~~y~~~a~~L~~d~-~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~ 539 (619)
.|.++++++..++++++ +.++.+.++.++.+. .||+..|++++...
T Consensus 411 p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~~ 458 (460)
T cd03788 411 PYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLDD 458 (460)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHh
Confidence 58999999999998865 666666666666543 48999999887643
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.22 E-value=1e-09 Score=113.76 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=127.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
|..+..++..|++++|+..++..+...|+++..+-..+.++...++.++|.+.+++++.++|+......++|++|.+.|+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 56677888889999999999998889999999999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCc
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 152 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~ 152 (619)
+.+|+..+++.+..+|+++..|..|+..|..+|+..+|...+.+...+.-+...+...+..+......|..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999999999888888887777666665554444444444433
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=3.2e-10 Score=119.29 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
...|..++..|+|++|+.+|+++++++|++..+++++|.+|..+|++++|+..++++++++|++..+++++|.+++.+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
+++|+..|+++++++|++..+...++.+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988887776554
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=6.1e-10 Score=107.11 Aligned_cols=147 Identities=22% Similarity=0.221 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007075 12 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 91 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 91 (619)
.+...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...+..+|....+.|++.+|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34445666666777889999999 99999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 92 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 92 al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+..+.|+++++|+.+|.+|.+.|++++|...|.+++++.|+++.+..| +++.|+-.|+.+++...+..
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN--lgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN--LGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh--HHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 88888999999887776554
No 133
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=7.2e-10 Score=117.01 Aligned_cols=159 Identities=16% Similarity=0.066 Sum_probs=127.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----LDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
..|..+...|++++|...++++++.+|++..++.. +..+...++ ...+.+.+......+|.....+..+|.++..
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence 45677888889999999999999989988877765 545544444 4444444444335567777788889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhhcCCcHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a--~~~~~la~~~~~~g~~~~a~ 156 (619)
+|++++|+..++++++++|++..++..+|.++...|++++|+.+++++++..|..+.. .....++..+...|+++++.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754332 33345788899999999998
Q ss_pred HHHHHH
Q 007075 157 EAHRDW 162 (619)
Q Consensus 157 ~~~~~~ 162 (619)
..+++.
T Consensus 207 ~~~~~~ 212 (355)
T cd05804 207 AIYDTH 212 (355)
T ss_pred HHHHHH
Confidence 887764
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=2.9e-10 Score=102.33 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+.+|..+...|++++|+..+++++..+|.+..++.++|.++...|++++|+.+++++++.+|++...++++|.++...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAY 103 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~ 103 (619)
+++|+..++++++.+|++....
T Consensus 101 ~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 101 PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999886643
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=8.1e-10 Score=105.24 Aligned_cols=131 Identities=18% Similarity=0.131 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
..+.+..|+.+.|..++++.....|++.......|..+...|++++|+++|+..++-+|.+...+-..-.+...+|+.-+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 34444555555555555555555555555555555555555555555555555555555555544444444445555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
|++.+.+-++..+.+.++|..++.+|...|+|++|.-+|++++-++|.++.
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence 555555555555555555555555555555555555555555555555443
No 136
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.7e-10 Score=114.65 Aligned_cols=161 Identities=25% Similarity=0.363 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
|.|++.+..|++++|.+.|++++..+....++++|+|..+..+|+.++|+++|-+.-.+--++.+.++.++.+|..+.+.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 44666677788888888888888888888888888888888888888888888887777777788888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------------------------------HHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS----------------------------------LAIDAYEQCLK 128 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~----------------------------------eA~~~~~~al~ 128 (619)
.+|+++|.++..+-|+++..+..||.+|-+.|+.. +|+.+|+++--
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88888888888888887777777777776666654 45555555555
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 007075 129 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 165 (619)
Q Consensus 129 ~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 165 (619)
+.|+... +.++.+.++-+.|+++++++.+++.-++
T Consensus 655 iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cCccHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5554322 2334556666677777777766665444
No 137
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.20 E-value=7.9e-10 Score=117.30 Aligned_cols=245 Identities=15% Similarity=0.190 Sum_probs=143.2
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecc-cCCCCCCC----C-CccE----EEecCCCCCCCcc--
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI-GYPNTTGL----P-TIDY----RITDSLADPPETK-- 321 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~-G~p~ttg~----~-~~Dy----~i~d~~~~p~~~~-- 321 (619)
.++.+.+++.++||++-.+ .+.....+.++.+...+-+..+ |...|.+. + .+.. .++|.++.|.+..
T Consensus 76 ~~l~~~l~~~~pDiv~~~g-d~~~~la~a~aa~~~~ipv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~ 154 (365)
T TIGR00236 76 EGLEELLLEEKPDIVLVQG-DTTTTLAGALAAFYLQIPVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKD 154 (365)
T ss_pred HHHHHHHHHcCCCEEEEeC-CchHHHHHHHHHHHhCCCEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHH
Confidence 3688899999999997652 2211122233333332222222 22122111 1 0111 1245555555421
Q ss_pred -----CCCccceEEcCCCccc--cCCCC-C-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHHHCCCceE
Q 007075 322 -----QKHVEELIRLPECFLC--YTPSP-E-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRL 389 (619)
Q Consensus 322 -----~~~~E~l~~lp~~~~~--~~p~~-~-~~~~~~~~~l~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~P~a~l 389 (619)
+...+++..+++..+. +.+.. . ........+ .++.+++.++++. .|..+.+++++.++.++.|+.++
T Consensus 155 ~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~ 233 (365)
T TIGR00236 155 NLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQI 233 (365)
T ss_pred HHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEE
Confidence 3334677778775421 11111 0 111111122 2345666676654 36778899999999888999998
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCC
Q 007075 390 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS 469 (619)
Q Consensus 390 ~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~ 469 (619)
++.+.+ ....+..+. +..+.. ++|+|++.++ ..+++.++..+|+++-++ |..++|||++|+|||+....
T Consensus 234 vi~~~~--~~~~~~~~~---~~~~~~-~~v~~~~~~~-~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~ 302 (365)
T TIGR00236 234 VYPVHL--NPVVREPLH---KHLGDS-KRVHLIEPLE-YLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDT 302 (365)
T ss_pred EEECCC--ChHHHHHHH---HHhCCC-CCEEEECCCC-hHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCC
Confidence 887543 223344333 334554 7899999877 678999999999998544 34579999999999986311
Q ss_pred ccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHH
Q 007075 470 VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMS 516 (619)
Q Consensus 470 ~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~ 516 (619)
. +|. .+...|...++..|+++..+.+.++..|++.+++++..
T Consensus 303 ~--~~~---e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 303 T--ERP---ETVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred C--CCh---HHHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhc
Confidence 0 111 12223544456679999999999999999777766544
No 138
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.19 E-value=1e-09 Score=125.73 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=134.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
|..+.+..+.|+++.|+..|+++++.+|+++.+...++.++...|+.++|+.++++++.-.|.....+..+|.++..+|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 56788899999999999999999999999975555889999999999999999999995455555666666889999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+++|++.|+++++.+|+++.++..++.++...++.++|++.++++.+.+|++... +.++..+...++..++++.+++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~---l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY---MTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH---HHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984432 3344444444555456666666
Q ss_pred HHHH
Q 007075 162 WGKR 165 (619)
Q Consensus 162 ~~~~ 165 (619)
..+.
T Consensus 195 ll~~ 198 (822)
T PRK14574 195 AVRL 198 (822)
T ss_pred HHHh
Confidence 5544
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=7.7e-10 Score=119.05 Aligned_cols=162 Identities=24% Similarity=0.360 Sum_probs=130.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFS 66 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~--------p~~~ 66 (619)
.+|..|..+++|.+|+..|++|+.+ +|.-+.++.+||.+|...|++++|..++++|+++. |.-.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4899999999999999999999985 34456789999999999999999999999999873 3334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 007075 67 QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS----- 133 (619)
Q Consensus 67 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~----- 133 (619)
..+.+++.++..++++++|+.++++++++. +.-+..+.+||.+|..+|++++|.++|++|+++....
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 578899999999999999999999998873 2345678999999999999999999999999875211
Q ss_pred ---HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 007075 134 ---RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 166 (619)
Q Consensus 134 ---~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 166 (619)
.....+ ++..|.+.+.+.++.+.+.+...-.
T Consensus 406 ~~~~~~l~~--la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 406 YGVGKPLNQ--LAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred hhhhHHHHH--HHHHHHHhcccchHHHHHHHHHHHH
Confidence 122233 6777777777776666665544433
No 140
>PLN02275 transferase, transferring glycosyl groups
Probab=99.18 E-value=2.4e-10 Score=121.50 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=101.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHH-----------------HHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCC
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 416 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il-----------------~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~ 416 (619)
..++++..+++ .|..+.+++++..+. +..|+.+|+++|+| +.++++++.++++|++
T Consensus 212 ~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~- 286 (371)
T PLN02275 212 RPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR- 286 (371)
T ss_pred CcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-
Confidence 34456677776 689999999987664 23689999999987 6788999999999997
Q ss_pred CcEEEcC-CccCcHHHHHhcccCcEeecCCC----CCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC
Q 007075 417 LRVDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 491 (619)
Q Consensus 417 ~rv~f~g-~~~~~~~~~~~~~~~Dv~Ldt~~----~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~ 491 (619)
+ ++|.+ +++ .++...+|+.+|+++.+++ .+.+++++|||+||+|||+.... +..-+-.-|..+++..
T Consensus 287 ~-v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g------g~~eiv~~g~~G~lv~ 358 (371)
T PLN02275 287 H-VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS------CIGELVKDGKNGLLFS 358 (371)
T ss_pred c-eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC------ChHHHccCCCCeEEEC
Confidence 6 77755 576 6899999999999985432 34688999999999999985432 2222222366677777
Q ss_pred CHHHHHHHHHHh
Q 007075 492 NEDEYVQLALQL 503 (619)
Q Consensus 492 ~~~~y~~~a~~L 503 (619)
+.+++++...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 888887776665
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.16 E-value=1.2e-09 Score=118.20 Aligned_cols=171 Identities=18% Similarity=0.121 Sum_probs=121.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCC-CCHHHHHHHHHHHHHc--------CCC-CCcE
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GLE-SLRV 419 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~-~~~~~~~~l~~~~~~~--------Gi~-~~rv 419 (619)
+..++++++|+ .|..+..++++.+++++.|+ .+|++++.+. .+.+....+++.+++. |-. -.-+
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 55678899998 69999999999999999997 4577775432 2334455555555543 111 0014
Q ss_pred EEc-CCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCc----EEecc-CCccccchhHHHHHhcCCCccc--c
Q 007075 420 DLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMA-GSVHAHNVGVSLLTKVGLKHLI--A 490 (619)
Q Consensus 420 ~f~-g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvP----vVt~~-g~~~~~r~~~~~l~~~gl~~~v--~ 490 (619)
+++ +.++ .++..++|+.+||||.|+.. +.++|++|||+||+| ||... +. ++..+ + +.++ .
T Consensus 338 ~~l~~~~~-~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G------~~~~l---~-~gllVnP 406 (456)
T TIGR02400 338 RYLNRSYD-REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG------AAQEL---N-GALLVNP 406 (456)
T ss_pred EEEcCCCC-HHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCC------ChHHh---C-CcEEECC
Confidence 444 4555 78999999999999999977 669999999999999 66432 21 12223 2 3333 3
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 007075 491 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 540 (619)
Q Consensus 491 ~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y 540 (619)
.|++++++.+.++++ +++.+++..+++++++.. ||...|++++...+
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 689999998888877 567777777778877542 89999999877654
No 142
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.8e-10 Score=115.09 Aligned_cols=138 Identities=25% Similarity=0.375 Sum_probs=123.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFN--------------------------PHCAEACNNLGVIYKDRDNLDKAVECYQ 56 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~la~~~~~~g~~~~A~~~~~ 56 (619)
.+|.+|.++++++.|+.+|++++.-. |.-..--...|+.++..|+|.+|+..|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 36778888899999999999988642 2223334567899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 57 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 57 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
+|+..+|+++..+.|.|.+|..+|.+..|+...+++++++|++..+|..-|.++..+.+|++|++.|+++++++|++.++
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHH
Q 007075 137 GQNR 140 (619)
Q Consensus 137 ~~~~ 140 (619)
...+
T Consensus 463 ~~~~ 466 (539)
T KOG0548|consen 463 IDGY 466 (539)
T ss_pred HHHH
Confidence 6553
No 143
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.16 E-value=5.4e-10 Score=117.67 Aligned_cols=239 Identities=17% Similarity=0.191 Sum_probs=138.4
Q ss_pred HHHHHhHhCCccEEEeCCCCCCCCcchhhccCC--cceeEeccc-CCCC---CCCCCccEEEecCCCCCCCccC--CCcc
Q 007075 255 KVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIG-YPNT---TGLPTIDYRITDSLADPPETKQ--KHVE 326 (619)
Q Consensus 255 ~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G-~p~t---tg~~~~Dy~i~d~~~~p~~~~~--~~~E 326 (619)
++.+.|++.++||++..++.. +-...++.+. .|+-+.-.+ ++.- -..+..|.+++ +..... ...+
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~--~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~-----~s~~~~~~~~~~ 152 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV--SGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVAL-----SFPETAKYFPKD 152 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc--chHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEE-----cchhhhhcCCCC
Confidence 577889999999998654332 2222222222 344321111 1100 00122444443 222211 2357
Q ss_pred ceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHHHCCCceEE-EeccCCCCHH
Q 007075 327 ELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLV-VKCKPFCCDS 400 (619)
Q Consensus 327 ~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~P~a~l~-l~g~~~~~~~ 400 (619)
++..+|+.... +.+. +.+...+++++..++.++++. .|...+++ +++..+. + ++.+++ ++|.+
T Consensus 153 ~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g----- 221 (350)
T cd03785 153 KAVVTGNPVREEILALD----RERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG----- 221 (350)
T ss_pred cEEEECCCCchHHhhhh----hhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----
Confidence 77777764321 1111 112234455556556666544 34333333 5444443 2 455544 55654
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCcc---ccchhH
Q 007075 401 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGV 477 (619)
Q Consensus 401 ~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~---~~r~~~ 477 (619)
..+.+++.++++ . ++|+|.|++ .++..+|..||+++.++ |++|++|||++|+|||+.+-... .....+
T Consensus 222 ~~~~l~~~~~~~--~-~~v~~~g~~---~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~ 292 (350)
T cd03785 222 DLEEVKKAYEEL--G-VNYEVFPFI---DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIPLPYAADDHQTANA 292 (350)
T ss_pred cHHHHHHHHhcc--C-CCeEEeehh---hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEeecCCCCCCcHHHhH
Confidence 345666666665 3 789999985 57888999999999533 57899999999999998642210 011123
Q ss_pred HHHHhcCCCccccC---CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 478 SLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 478 ~~l~~~gl~~~v~~---~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
..+...|...++.. |.+++.+....+..|++.++.+++..++.
T Consensus 293 ~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 293 RALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45555566555543 79999999999999999999999888764
No 144
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6.7e-10 Score=108.98 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=138.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
.++|.+|+..|.+.+|...++.+++..| .++.+..|+.+|...++...|+..|...++..|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4789999999999999999999999776 478899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 149 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~ 149 (619)
+++|+++|+.+++.+|.+.++...+|.-|+.-++.+-|+.+|++.+++.-.+++.+.|..++-.|..+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997776666544
No 145
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=4.3e-10 Score=114.21 Aligned_cols=156 Identities=26% Similarity=0.267 Sum_probs=143.8
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 3 NLGVAYGEM--LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 3 ~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
||...++.+ +++.+|..+...++..+..++.++.|.|++-+..|++++|.+.|+.|+..+....++++|+|..+..+|
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~ 538 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALG 538 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhc
Confidence 444444443 479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
+.++|+.+|-+.-.+--++.++++.++.+|..+.+...|+++|-++..+-|+++..... ++..|-++|+..++++.+-
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk--l~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK--LADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH--HHHHhhcccchhhhhhhhh
Confidence 99999999999988888999999999999999999999999999999999999988777 8899999999988887653
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=9e-09 Score=98.22 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=130.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
-|..+...|++++|+++|+..++.+|.+..++-..-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|+
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 35667788999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 146 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~ 146 (619)
+|.-||++.+-++|.++..+..+|.+++.+| +++-|.++|.++++++|.+..+++...++-..
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887 56679999999999999887777765554433
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=2.1e-09 Score=94.06 Aligned_cols=105 Identities=24% Similarity=0.307 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNN 105 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~ 105 (619)
+..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567788888888888888888888888887765 4677888888888888888888888888887774 567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 106 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 106 Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
+|.++..+|++++|+.+++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 8888888888888888888888888887554
No 148
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=2.8e-09 Score=105.25 Aligned_cols=159 Identities=23% Similarity=0.267 Sum_probs=137.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+.+|..++..|++..|+..|..|++.+|++..+++..|.+|...|+..-|+.-+.+++++.|++..+....|.++.++|+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTY---AEAYNNL------------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 146 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~---~~a~~~L------------g~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~ 146 (619)
+++|...|++.++.+|++ .++...+ ..-+...|++..|+++..+.+++.|=+...+. +-+.+|
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~--~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ--ARAKCY 199 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH--HHHHHH
Confidence 999999999999999964 2333322 22345678999999999999999996655544 467788
Q ss_pred hhcCCcHHHHHHHHHH
Q 007075 147 INEGHDDKLFEAHRDW 162 (619)
Q Consensus 147 ~~~g~~~~a~~~~~~~ 162 (619)
+..|+...++.-.+..
T Consensus 200 i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQA 215 (504)
T ss_pred HhcCcHHHHHHHHHHH
Confidence 8888877776655443
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.09 E-value=2.4e-09 Score=117.18 Aligned_cols=134 Identities=22% Similarity=0.216 Sum_probs=116.0
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHH
Q 007075 2 YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--------DNLDKAVECYQMALSI--KPNFSQS 68 (619)
Q Consensus 2 ~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------g~~~~A~~~~~~al~l--~p~~~~~ 68 (619)
|..|..+...++ +.+|+.+|++|++++|+++.++..++.++... .+.+++.+..++++.+ +|..+.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 455666666554 88999999999999999999999998887653 2355677777777774 7778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 69 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 69 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
+.-+|..+...|++++|...+++|++++|+ ..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999999999999995 8899999999999999999999999999999998863
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.2e-09 Score=104.79 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 007075 13 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI 89 (619)
Q Consensus 13 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~ 89 (619)
+.++-+.-++.-++.+|++.+-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 36677778888899999999999999999999999999999999999999999999999999887654 367899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 90 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 90 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
+++++++|++..+.+.||..++.+|+|.+|+..+++.++..|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999887643
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=2.4e-09 Score=93.68 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=96.1
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~ 74 (619)
++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ ..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4789999999999999999999999998876 5789999999999999999999999999998885 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
++...|++++|+.+++++++..|++..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999876543
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.08 E-value=6.4e-09 Score=114.44 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=80.7
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
|+.||.+|.++|+.+++..+.-.|-.++|++.+.|..++....++|++.+|.-||.+|++.+|.+....++.+.+|.+.|
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG 255 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence 57788999999999999988888888899988999999998889999999999999999988888888888888888888
Q ss_pred CHHHHHHHHHHHHHh
Q 007075 81 KMDAAAEMIEKAIAA 95 (619)
Q Consensus 81 ~~~eA~~~~~~al~~ 95 (619)
++..|...|.++++.
T Consensus 256 ~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 256 DLKRAMETFLQLLQL 270 (895)
T ss_pred hHHHHHHHHHHHHhh
Confidence 888777766665544
No 153
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.08 E-value=1.6e-10 Score=104.02 Aligned_cols=129 Identities=14% Similarity=0.223 Sum_probs=87.7
Q ss_pred CeEEEecCCCC--cCCHHHHH-HHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 357 FITFGSFNNLA--KITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 357 ~~~f~~~~~~~--K~~~~~~~-~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
.++||.+++.. |....+++ +|.++.++.|+.+|.++|.+. + ++++. ..++|+|.|++ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 46889999884 88888999 999999999999999998752 1 23322 23699999997 48999
Q ss_pred hcccCcEeecCCCC--CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcC
Q 007075 434 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 506 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~--~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d 506 (619)
.++.+||++.|+.. +.+++++|+|++|+|||+.... ...+....+..-++..|++++++.+.+|+.|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG------AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH------CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc------hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999864 4578999999999999985541 1223333455556788999999999999876
No 154
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.07 E-value=1.3e-09 Score=114.74 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=136.6
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCC--cceeEeccc-CCCCC---CCCCccEEEecCCCCCCCccCCCccc
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIG-YPNTT---GLPTIDYRITDSLADPPETKQKHVEE 327 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G-~p~tt---g~~~~Dy~i~d~~~~p~~~~~~~~E~ 327 (619)
.++.+.|++.++||++..++.+ +....++.+. .|+-..-++ .+... ..+.+|.+++.. ++...++ +
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~d~ii~~~----~~~~~~~--~ 151 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYV--SGPAGLAAKLLGIPLFHHEQNAVPGLTNKLLSRFAKKVLISF----PGAKDHF--E 151 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcc--cHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhCeeEECc----hhHhhcC--C
Confidence 3678889999999998865433 2333333332 244221111 11000 013355554421 1112222 2
Q ss_pred eEEcCCCcc-c-cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHH-HHHHHHHHHHHCCCceEEEeccCCCCHHHH
Q 007075 328 LIRLPECFL-C-YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVR 402 (619)
Q Consensus 328 l~~lp~~~~-~-~~p~~~~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~-~~~~~~~il~~~P~a~l~l~g~~~~~~~~~ 402 (619)
...+|+... . +.+. ..+...+++++.++++++++. .|.... +.+++.++.. ++.++++++++ ...
T Consensus 152 ~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~ 221 (348)
T TIGR01133 152 AVLVGNPVRQEIRSLP----VPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDL 221 (348)
T ss_pred ceEEcCCcCHHHhccc----chhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chH
Confidence 244554321 1 1111 111223456666678777655 343333 3355555543 24445443322 123
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccc--cchhHHHH
Q 007075 403 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLL 480 (619)
Q Consensus 403 ~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~--~r~~~~~l 480 (619)
+.+++.+++.|+. +++.|. . . ++..+|..||+++.+ +|++|++|||++|+|||+..-.... .+..+.++
T Consensus 222 ~~l~~~~~~~~l~-~~v~~~-~---~-~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i 292 (348)
T TIGR01133 222 EKVKNVYQELGIE-AIVTFI-D---E-NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL 292 (348)
T ss_pred HHHHHHHhhCCce-EEecCc-c---c-CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH
Confidence 6788888888886 677675 2 2 677888999999953 3578999999999999976422111 12233456
Q ss_pred HhcCCCcccc-C--CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 481 TKVGLKHLIA-K--NEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 481 ~~~gl~~~v~-~--~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
...+..-++. . +++++++...+++.|++.++++++..++.
T Consensus 293 ~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 293 EDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKL 335 (348)
T ss_pred HHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 6655444443 2 49999999999999999999999888764
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=1.9e-09 Score=88.56 Aligned_cols=98 Identities=39% Similarity=0.622 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
+++++|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.+++++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 007075 114 GSISLAIDAYEQCLKIDP 131 (619)
Q Consensus 114 g~~~eA~~~~~~al~~~P 131 (619)
|++++|...++++++.+|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888777777777665
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=2.1e-09 Score=116.32 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=125.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
...+..+...++.++|..++.++-.++|..+..|+..|.++..+|++++|.++|..|+.++|++......+|.++...|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34677888889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 82 MDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 82 ~~eA~~--~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
-.-|.. .++.+++++|.++++|+++|.++..+|+.++|.++|..|+++++.+|-
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 777776 999999999999999999999999999999999999999999887753
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=6.8e-09 Score=108.35 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=126.1
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHH
Q 007075 3 NLGVAYGEML---KFDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFSQ 67 (619)
Q Consensus 3 ~lg~~~~~~g---~~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~l~p~~~~ 67 (619)
..|...+..+ ..+.|+.+|.+++ +++|+++.+|..++.|+... .+..+|.+..++|++++|.++.
T Consensus 260 lrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 260 LAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH
Confidence 3444444333 3567999999999 99999999999999998754 3567899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 147 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~ 147 (619)
++..+|.++...++++.|+..|++|+.++|+++.+++..|.++...|+.++|.+.++++++++|....+..-.+....|+
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999998766654433332555
Q ss_pred hcC
Q 007075 148 NEG 150 (619)
Q Consensus 148 ~~g 150 (619)
..+
T Consensus 420 ~~~ 422 (458)
T PRK11906 420 PNP 422 (458)
T ss_pred CCc
Confidence 443
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=5.3e-09 Score=98.12 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 007075 11 MLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAA 85 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA 85 (619)
.++|..+...+.+.++.++.+ ..+++++|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 445677777776666665555 6678999999999999999999999999987763 45899999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 007075 86 AEMIEKAIAANPTYAEAYNNLGVLYR-------DAGSIS-------LAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 86 ~~~~~~al~~~p~~~~a~~~Lg~~~~-------~~g~~~-------eA~~~~~~al~~~P~~~ 134 (619)
+.+++++++++|.....+.++|.++. .+|+++ +|+..|++++..+|++.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999998 777776 55566666777777654
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.4e-09 Score=110.12 Aligned_cols=159 Identities=21% Similarity=0.176 Sum_probs=135.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------HHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------SLNN 71 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~------------~~~~ 71 (619)
-+.++...|++++|+..--..+++++.+.++++..|.+++..++.+.|+..|++++.++|++.. .+-.
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 3567888899999999999999999999999999999999999999999999999999998765 3566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 007075 72 LGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 147 (619)
Q Consensus 72 lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~ 147 (619)
-|+-.++.|+|.+|.++|..+|.++|++ ...|.+++.+...+|+..+|+..++.+++++|....++.. -+.+++
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~--ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR--RANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH--HHHHHH
Confidence 7888999999999999999999999986 4568889999999999999999999999999988777665 566667
Q ss_pred hcCCcHHHHHHHHHHHH
Q 007075 148 NEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 148 ~~g~~~~a~~~~~~~~~ 164 (619)
..++++++.+.+++..+
T Consensus 333 ~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66777777766655543
No 160
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.05 E-value=3.7e-09 Score=111.90 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=160.4
Q ss_pred CceEEEEEecCcCCChhh-HHHHHHH-hhhCCeEEEcccC--C--------HHHHHHHhHhCCccEEEeCCCCCCCCcch
Q 007075 214 QNYKVVVYSAVVKADAKT-IRFREKV-MKKGGIWRDIYGI--D--------EKKVAAMVREDKIDILVELTGHTANNKLG 281 (619)
Q Consensus 214 ~~fev~~ys~~~~~D~~t-~~~r~~~-~~~~~~~~~~~~~--~--------~~~~~~~i~~d~~Dilvdl~g~t~~~r~~ 281 (619)
..+++.++.++...|... ..+..-. ....+..-.+.+. + ..++.+.|++.++||++-. |.......+
T Consensus 26 ~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~-g~~~~~~~~ 104 (363)
T cd03786 26 PGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVL-GDTNETLAA 104 (363)
T ss_pred CCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEe-CCchHHHHH
Confidence 478888777766554322 1122111 1111222333332 1 1367788899999999764 332222333
Q ss_pred hhccCCcceeEecccCCCCCC-CCCccE-------EEecCCCCCCCcc-------CCCccceEEcCCCccc---cCCCCC
Q 007075 282 MMACQPAPVQVTWIGYPNTTG-LPTIDY-------RITDSLADPPETK-------QKHVEELIRLPECFLC---YTPSPE 343 (619)
Q Consensus 282 ~~a~r~Apvq~~~~G~p~ttg-~~~~Dy-------~i~d~~~~p~~~~-------~~~~E~l~~lp~~~~~---~~p~~~ 343 (619)
.++.+...+.+...-+...+. .+.++. .++|.++.+.+.. +.-.+++..+++.... +.+...
T Consensus 105 ~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~ 184 (363)
T cd03786 105 ALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELA 184 (363)
T ss_pred HHHHHHcCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhh
Confidence 444444444443221100010 011111 1235555554432 2224567777764321 111111
Q ss_pred -CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCC
Q 007075 344 -AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 417 (619)
Q Consensus 344 -~~~~~~~~~l~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~ 417 (619)
....+...+++++.+++.++++. .|..+.+++++.++... +.++++.+.+ ..+..+++.+.+.++..+
T Consensus 185 ~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l~~~~~~~~~~~~ 258 (363)
T cd03786 185 KKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRIREAGLEFLGHHP 258 (363)
T ss_pred ccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHHHHHHHhhccCCC
Confidence 11112234556666667777775 36677788888776443 4565555543 556788888888887337
Q ss_pred cEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHH
Q 007075 418 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYV 497 (619)
Q Consensus 418 rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~ 497 (619)
+|.|+|... ..++..+|..||+++-++. +.+.|||++|+|||+..... ....+...|...++.+|.++.+
T Consensus 259 ~v~~~~~~~-~~~~~~l~~~ad~~v~~Sg----gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~~~~~~~~~~~i~ 328 (363)
T cd03786 259 NVLLISPLG-YLYFLLLLKNADLVLTDSG----GIQEEASFLGVPVLNLRDRT-----ERPETVESGTNVLVGTDPEAIL 328 (363)
T ss_pred CEEEECCcC-HHHHHHHHHcCcEEEEcCc----cHHhhhhhcCCCEEeeCCCC-----ccchhhheeeEEecCCCHHHHH
Confidence 899998765 5678888999999996653 35799999999999875421 1112333465555556789999
Q ss_pred HHHHHhhcCHHHHHHH
Q 007075 498 QLALQLASDVTALANL 513 (619)
Q Consensus 498 ~~a~~L~~d~~~~~~l 513 (619)
+....+..|+..+..+
T Consensus 329 ~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 329 AAIEKLLSDEFAYSLM 344 (363)
T ss_pred HHHHHHhcCchhhhcC
Confidence 9999999998666554
No 161
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.04 E-value=1.9e-09 Score=115.03 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=95.4
Q ss_pred cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC
Q 007075 368 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 446 (619)
Q Consensus 368 K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~-Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~ 446 (619)
++.+.+++++..+.++.|+.++++++.+ +..++.+++.+.+. |+. +.+.. .+...+|+.+|+++-++
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~s- 269 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAAS- 269 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEECc-
Confidence 4567888999888888899999988642 25567777777777 664 44432 36778899999999754
Q ss_pred CCCchhHHHhhhcCCcEEeccCCccccchhH------------HHHHhcC-CCcccc--CCHHHHHHHHHHhhcCHHHHH
Q 007075 447 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV------------SLLTKVG-LKHLIA--KNEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 447 ~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~------------~~l~~~g-l~~~v~--~~~~~y~~~a~~L~~d~~~~~ 511 (619)
|++++|||++|+|||+...-.......+ -++..-+ .++++. .|+++.++...+++.|++.++
T Consensus 270 ---G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 270 ---GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred ---cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 6777799999999997643211110111 1111111 233443 468899999999999999999
Q ss_pred HHHHHHHHH
Q 007075 512 NLRMSLRDL 520 (619)
Q Consensus 512 ~lr~~~r~~ 520 (619)
++++.+++.
T Consensus 347 ~~~~~~~~~ 355 (380)
T PRK00025 347 ALLEGFTEL 355 (380)
T ss_pred HHHHHHHHH
Confidence 999987543
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.04 E-value=2.3e-09 Score=88.02 Aligned_cols=98 Identities=34% Similarity=0.571 Sum_probs=93.8
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
++++|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+++++++++..|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 007075 81 KMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~ 98 (619)
++++|...++++++.+|+
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999988774
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=6.3e-09 Score=97.99 Aligned_cols=106 Identities=26% Similarity=0.444 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 29 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 105 (619)
Q Consensus 29 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 105 (619)
+....+++++|..+...|++++|+.+|++++++.|+. ..++.++|.++...|++++|+.+++++++..|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4567788999999999999999999999999887654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 007075 106 LGVLYRDAGS--------------ISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 106 Lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~ 134 (619)
+|.++...|+ +++|++.++++++.+|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999999888 6899999999999999873
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.02 E-value=4.8e-09 Score=120.77 Aligned_cols=180 Identities=15% Similarity=0.116 Sum_probs=126.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCCCH-HHHHHHHHHHHHc--------CCC-C-C
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GLE-S-L 417 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~~~-~~~~~l~~~~~~~--------Gi~-~-~ 417 (619)
.+..++++++|+ .|..+..++++.+++++.|+ .+|+++|.|..++ +..+.+++.+.+. |.. - .
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 355578899999 69999999999999999997 6888887543222 3334444444332 221 0 1
Q ss_pred cEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhc-----CCcEEeccCCccccchhHHHHHhcCCCccc--
Q 007075 418 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-- 489 (619)
Q Consensus 418 rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~-----GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v-- 489 (619)
.+.|.+.++ ..+..++|+.|||||.|+.. +.+.+++|||+| |+|||+-... ++..+. ..++
T Consensus 343 v~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G------~~~~l~----~~llv~ 411 (726)
T PRK14501 343 IHYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG------AAAELA----EALLVN 411 (726)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccc------hhHHhC----cCeEEC
Confidence 345667777 78999999999999999987 669999999999 5566653211 122221 1233
Q ss_pred cCCHHHHHHHHHHhhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 007075 490 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 548 (619)
Q Consensus 490 ~~~~~~y~~~a~~L~~d~-~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~~~ 548 (619)
..|.+++++.+.++++++ +.+....+++++++. .||+..+++++.+.|+++|....
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 368999999999988864 344444445666543 48999999999999999997644
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=1.3e-09 Score=85.75 Aligned_cols=66 Identities=44% Similarity=0.717 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 007075 66 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 131 (619)
Q Consensus 66 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g-~~~eA~~~~~~al~~~P 131 (619)
+..|.++|.+++..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555554
No 166
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.01 E-value=6.8e-09 Score=110.48 Aligned_cols=189 Identities=14% Similarity=0.092 Sum_probs=117.7
Q ss_pred cceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCCC-cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHH
Q 007075 326 EELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 402 (619)
Q Consensus 326 E~l~~lp~~~~~--~~p~~~~~~~~~~~~l~~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~ 402 (619)
+++..+|++... |.+...... ........+.+++|.+|++. |... ++...+.+..|+.+|+|+|.+..... .
T Consensus 173 ~~i~~i~ngvd~~~f~~~~~~~~-~~~~~~~~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~~~-~ 247 (373)
T cd04950 173 PNVVLVPNGVDYEHFAAARDPPP-PPADLAALPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVSID-P 247 (373)
T ss_pred CCEEEcccccCHHHhhcccccCC-ChhHHhcCCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCccC-h
Confidence 788889975431 333221111 00111234566788888885 4443 44556667789999999997511101 1
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC------CCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 403 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 403 ~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~------~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
.. + .. .++|+|+|.++ .+++..+++.+||++-|+.. +.++.++|+|+||+|||+... +
T Consensus 248 ~~----~--~~--~~nV~~~G~~~-~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~ 311 (373)
T cd04950 248 SA----L--LR--LPNVHYLGPKP-YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------P 311 (373)
T ss_pred hH----h--cc--CCCEEEeCCCC-HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------H
Confidence 11 1 11 27899999998 68999999999999998853 335689999999999997542 2
Q ss_pred HHHHHhcCCCccccCCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 477 VSLLTKVGLKHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 477 ~~~l~~~gl~~~v~~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
.+....+...+++.|.+++++.+.+.+. +...+.. +. +. ... .++|+..++++++..++
T Consensus 312 -~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~--~~-~~-~~~--~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 312 -EVRRYEDEVVLIADDPEEFVAAIEKALLEDGPARER--RR-LR-LAA--QNSWDARAAEMLEALQE 371 (373)
T ss_pred -HHHhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH--HH-HH-HHH--HCCHHHHHHHHHHHHHh
Confidence 2222223222445789999999999543 3322221 11 11 222 37899999999865543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=8.3e-09 Score=97.17 Aligned_cols=80 Identities=30% Similarity=0.501 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
+++|..+...|++++|+.+|++++...|+. ..++.++|.++...|++++|+.+++++++..|++..++.++|.++..
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 345555555555555555555555444332 23455555555555555555555555555555555555555555555
Q ss_pred cCC
Q 007075 79 QGK 81 (619)
Q Consensus 79 ~g~ 81 (619)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 444
No 168
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.01 E-value=1.6e-08 Score=116.07 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=126.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
+..++...|+.++|+.++++++.-.|........+|.++...|++++|++.|+++++.+|+++.++..++.++...++.+
T Consensus 74 ll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 74 WLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHH
Confidence 45677888999999999999994445555566666889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~ 158 (619)
+|++.+++++..+|..... ..++.++...++..+|++.|+++++.+|++..+...+..++ ...|-...+.+.
T Consensus 154 eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l--~~~~~~~~a~~l 225 (822)
T PRK14574 154 VVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEIL--QRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCcHHHHHH
Confidence 9999999999999996654 55666776788887899999999999999999887755444 444444444433
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=1.8e-09 Score=84.96 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 007075 31 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 97 (619)
Q Consensus 31 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 97 (619)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57788999999999999999999999999999999999999999999999 79999999999999887
No 170
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.00 E-value=2.5e-08 Score=106.86 Aligned_cols=155 Identities=14% Similarity=0.033 Sum_probs=115.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------------------- 62 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~---------------------- 62 (619)
+..+...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888888888888888888888888888886555554321
Q ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Q 007075 63 --------------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---------------------------- 94 (619)
Q Consensus 63 --------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---------------------------- 94 (619)
|+++.+...++..+...|+.++|...++++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 23444555666667777777766665555444
Q ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 95 ---ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 95 ---~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
.+|+++..+..+|.++...+++++|.++|+++++.+|++... ..++..+...|+.+++.+.+++-
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~---~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY---AWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777788888888888899999999999998888886542 23777888888888877766643
No 171
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=9.6e-09 Score=113.74 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
+|.++.++++.+.|+..|+++++++|.+..++..||.+-.... .+..+...+.++...++.++.++..|+.-++..|
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 3455555666666666666666666655555555555443322 2444555555555555555555444555455555
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 157 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~ 157 (619)
+|+.+......++...-.. .+.++++|.+|..+|++++|..+|.++++.+|++ .......++..|+..|+.+.+..
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHH
Confidence 5555555554444443222 2335556666666666666666666666666655 12222235555555555554444
Q ss_pred HHH
Q 007075 158 AHR 160 (619)
Q Consensus 158 ~~~ 160 (619)
.++
T Consensus 364 ~fE 366 (1018)
T KOG2002|consen 364 CFE 366 (1018)
T ss_pred HHH
Confidence 333
No 172
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.99 E-value=3.2e-09 Score=113.20 Aligned_cols=250 Identities=16% Similarity=0.116 Sum_probs=143.0
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEec------ccCCCC---CCCCCccEEEecCCCCCCCccCCC
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW------IGYPNT---TGLPTIDYRITDSLADPPETKQKH 324 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~------~G~p~t---tg~~~~Dy~i~d~~~~p~~~~~~~ 324 (619)
.++.+.|++.++|++|-.+| ...+.....+.|...+-+.+ |.+..- .-...+|.+++.- |. ...+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~---~~-e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL---PF-EKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC---CC-cHHHH
Confidence 37889999999999998776 43332221233333333322 334321 1123455554421 21 22222
Q ss_pred c---cceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHHHCCCceEEEecc
Q 007075 325 V---EELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 394 (619)
Q Consensus 325 ~---E~l~~lp~~~~~~~p~--~~~~~~~~~~~l~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~P~a~l~l~g~ 394 (619)
. -+.....+......+. +.....+...+++++..+++.++ |. .|+.+.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 2 1333333322111010 00001112345665555555442 43 4688899999999988899998876543
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccc
Q 007075 395 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 474 (619)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r 474 (619)
+. ...+.+.+..+..|.. .+|.+.+. +...+|..+|+++.++ |++++|+|++|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~~-~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGPD-LQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCCC-CcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 2345555556666665 67776543 2345888899999777 7777799999999887643222222
Q ss_pred hhHHH------------HHhcC-CCcccc--CCHHHHHHHHHHhhcCH----HHHHHHHHHHHHHh
Q 007075 475 VGVSL------------LTKVG-LKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 521 (619)
Q Consensus 475 ~~~~~------------l~~~g-l~~~v~--~~~~~y~~~a~~L~~d~----~~~~~lr~~~r~~~ 521 (619)
..+.. +..-+ .+|++- .+++...+.+.+|..|+ +.++++++.+++..
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 22221 11111 245553 36888999999999999 99988888887643
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=9.4e-09 Score=96.42 Aligned_cols=100 Identities=29% Similarity=0.350 Sum_probs=87.4
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 77 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 77 (619)
++++|..+...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+.+|+++++++|.....+.++|.++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 468899999999999999999999988766 34689999999999999999999999999999999999999999998
Q ss_pred -------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 007075 78 -------VQGKMD-------AAAEMIEKAIAANPTYA 100 (619)
Q Consensus 78 -------~~g~~~-------eA~~~~~~al~~~p~~~ 100 (619)
..|+++ +|+.++++++..+|.+.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 777776 55666667777788654
No 174
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=3.2e-08 Score=102.83 Aligned_cols=133 Identities=21% Similarity=0.172 Sum_probs=125.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 28 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|++.+++++.++|+.+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 108 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 108 ~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
.+|.+.|++.+|+..+++.+..+|+++..|.. ++..|...|+..++..+..+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~--LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDL--LAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHH--HHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999999999999998876 899999999988777666543
No 175
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=2.2e-08 Score=91.46 Aligned_cols=122 Identities=22% Similarity=0.168 Sum_probs=99.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTV 78 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~ 78 (619)
.......++...+...+++.+..+|+. ..+.+.+|.++...|++++|.+.|+.++...|+. ..+..+|+.++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 334456788888888899988888887 5677788999999999999999999999877655 3477888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
.|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 98 ~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999866 33444456778889999999999999999998874
No 176
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.97 E-value=1.2e-08 Score=117.52 Aligned_cols=179 Identities=16% Similarity=0.090 Sum_probs=129.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCce----EEEeccCC-CCHHHHHHHHHHHHHcC--CCCCc---EEEcC
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LESLR---VDLLP 423 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~----l~l~g~~~-~~~~~~~~l~~~~~~~G--i~~~r---v~f~g 423 (619)
+..++.+++|+ .|+.+..++++.++|++.|+.+ |+.++.+. .+.+..+++++.+.+++ |. ++ +.|.|
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In-~~~g~~~~~p 356 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRIN-GRFGSVSSVP 356 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhh-cccccCCCce
Confidence 45567788988 6999999999999999999864 44344332 34456677888887775 43 22 23332
Q ss_pred ------CccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCc----EEeccCCccccchhHHHHHhcCCCccc--c
Q 007075 424 ------LILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--A 490 (619)
Q Consensus 424 ------~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvP----vVt~~g~~~~~r~~~~~l~~~gl~~~v--~ 490 (619)
.++ ..+..++|+.|||||-|+.+ +.+++++|||+||+| +|...-. |++- .+|...++ .
T Consensus 357 v~~l~~~v~-~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~------G~~~--~l~~~allVnP 427 (797)
T PLN03063 357 IHHLDCSVD-FNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA------GAGQ--SLGAGALLVNP 427 (797)
T ss_pred eEEecCCCC-HHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCc------Cchh--hhcCCeEEECC
Confidence 455 68999999999999999987 779999999999998 5542211 1111 12333433 3
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 007075 491 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 547 (619)
Q Consensus 491 ~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~~ 547 (619)
.|.++.++.+.++++ +++++++..+.+++++. .+|+..|++.+.+.+++++...
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~---~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVK---THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---hCCHHHHHHHHHHHHHHHhhhh
Confidence 789999999988888 77777776666776543 3799999999999999998643
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-08 Score=104.34 Aligned_cols=118 Identities=23% Similarity=0.240 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..|+.|++.|+|..|...|++++..-..... -+.++.... .++ -..++.|++.++.++++|
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FDEEEQKKA--EAL-----KLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CCHHHHHHH--HHH-----HHHHhhHHHHHHHhhhhH
Confidence 3577888888888888888888764221100 000000000 000 012445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
.+|+....++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 555555555555555555555555555555555555555555555555555444443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.2e-09 Score=106.59 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE------------ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-- 67 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-- 67 (619)
+-.|.+++-..+.+.|+.+|++++.++|+... .+-.-|+-.+..|++.+|.++|..+|.++|++..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 34567778888999999999999999998643 4567888889999999999999999999998654
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 68 --SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 68 --~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.+.|++.+...+|+..+|+...+.++++++.+..++...|.|+..++++++|++.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999998766
No 179
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.3e-09 Score=107.90 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
+.|+.++..|+|.+|+.+|.+++..+|+++.+|.|.|.||..++++..|+...+++++++|++..+|..-|.++..+.+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 126 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a 126 (619)
++|++.|+++++.+|++.++.-.+..|+..+.......+.++++
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999999999999999999998888765555555666663
No 180
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=3.5e-08 Score=104.10 Aligned_cols=160 Identities=17% Similarity=0.040 Sum_probs=131.0
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 77 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 77 (619)
+..+|..+...|+.++|...+.++.+..+.+ .+..+..+.++...|++++|.+.++++++.+|++..++.. +..+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence 3567888889999999999999988877644 5677888999999999999999999999999999988775 55555
Q ss_pred HcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcH
Q 007075 78 VQGK----MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 153 (619)
Q Consensus 78 ~~g~----~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~ 153 (619)
..|+ .+.+.+.++.....+|....++..+|.++..+|++++|+..++++++++|++..++.. ++.++...|+.+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~--la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA--VAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH--HHHHHHHcCCHH
Confidence 5554 4444444444445677778888999999999999999999999999999999766554 788889999999
Q ss_pred HHHHHHHHHH
Q 007075 154 KLFEAHRDWG 163 (619)
Q Consensus 154 ~a~~~~~~~~ 163 (619)
++.+.++++.
T Consensus 166 eA~~~l~~~l 175 (355)
T cd05804 166 EGIAFMESWR 175 (355)
T ss_pred HHHHHHHhhh
Confidence 9888776653
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.93 E-value=1.4e-07 Score=93.68 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=129.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC---NNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVV 75 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~la~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~ 75 (619)
|..|..++..|+|++|++.|++++...|....+. +.+|.++...+++++|+..+++.++..|+++ .+++.+|.+
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 5678889999999999999999999999886654 8999999999999999999999999988775 478889988
Q ss_pred HHHcC---------------C---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHH
Q 007075 76 YTVQG---------------K---MDAAAEMIEKAIAANPTYAEA-----------------YNNLGVLYRDAGSISLAI 120 (619)
Q Consensus 76 ~~~~g---------------~---~~eA~~~~~~al~~~p~~~~a-----------------~~~Lg~~~~~~g~~~eA~ 120 (619)
+...+ + ..+|+..+++.++..|+..-+ -+..|..|.+.|++..|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 65543 1 357889999999999986321 234678899999999999
Q ss_pred HHHHHHHHhCCCCHHHHHH-HHHHHHHhhcCCcHHHHHHHH
Q 007075 121 DAYEQCLKIDPDSRNAGQN-RLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 121 ~~~~~al~~~P~~~~a~~~-~~la~~~~~~g~~~~a~~~~~ 160 (619)
.-++.+++.-|+.+..... ..+...|...|..+++.+..+
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999987654322 235677888888776655443
No 182
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.6e-08 Score=100.84 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=143.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
.+|.+++..|++++|+..|+++.-++|....+.-..|.++...|++++-..+....+.++.....-|+--+..++..+++
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 57788888899999999999998899988888888888888889988888888888888877888888888899999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
..|+.+-+|+++.+|++..++...|.++..+|+.++|+-+|+.|..+.|...+.+.. +...|+..+...++.......
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G--L~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG--LFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH--HHHHHHhhchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987666544 888999999998887776665
Q ss_pred HHHHHh
Q 007075 163 GKRFMR 168 (619)
Q Consensus 163 ~~~~~~ 168 (619)
.+.+..
T Consensus 395 ~~~~~~ 400 (564)
T KOG1174|consen 395 IRLFQN 400 (564)
T ss_pred HHHhhc
Confidence 555543
No 183
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-08 Score=101.99 Aligned_cols=162 Identities=19% Similarity=0.123 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
+--|..++..+++..|+.+-+++++.+|.+.+++...|.++...++.++|+-.|+.|..+.|..-+.|..|-.+|...|+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 33455677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLG-VLYRD-AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg-~~~~~-~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
+.||....+.+++.-|+++.++..+| .++.. ----++|.+.++++++++|++..+... ++.....+|.+.++...+
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~--~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL--IAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH--HHHHHHhhCccchHHHHH
Confidence 99999999999999999999988886 44433 334578999999999999998887655 778888889888888877
Q ss_pred HHHHHH
Q 007075 160 RDWGKR 165 (619)
Q Consensus 160 ~~~~~~ 165 (619)
+.+...
T Consensus 462 e~~L~~ 467 (564)
T KOG1174|consen 462 EKHLII 467 (564)
T ss_pred HHHHhh
Confidence 766554
No 184
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.92 E-value=4.6e-08 Score=108.52 Aligned_cols=137 Identities=21% Similarity=0.272 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTV 78 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~ 78 (619)
.|++.++..|+|..+..++..++... +--++.++++|.+|..+|++++|..+|.++++.++++ .-.++.+|.++..
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 35555555566666666555555533 2223445666666666666666666666666665555 4455556666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----SISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g----~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
.|++++|+.+|++.++..|++.+....||.+|...+ ..++|..+..++++..|.+..++..
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 666666666666666666666666666665555554 4455555566666655555555544
No 185
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=2.4e-08 Score=106.35 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=147.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
|..+.-.++.++|.+.+...++.+...|.+.+.....|..+..+|+.++|.++.+.+++.++.+...|.-+|.++...++
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh
Confidence 44566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
|++|+++|+.|+.+.|++...+..++.+..++++++.....-.+.+++.|.....|.. ++..+...|++..+.+..+.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~--~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG--FAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766 66777777888877777766
Q ss_pred HHHH
Q 007075 162 WGKR 165 (619)
Q Consensus 162 ~~~~ 165 (619)
+.+.
T Consensus 169 f~~t 172 (700)
T KOG1156|consen 169 FEKT 172 (700)
T ss_pred HHHh
Confidence 6554
No 186
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.89 E-value=1.4e-07 Score=101.57 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
|.++..+|++++|..+++++.+..|++. .+....+.++...|++++|.+.+++.++..|+++.++..++.++...|+++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 4455555555555555555555555543 344444555555556666665566555555655555555555555555555
Q ss_pred HHHHHHHHHH
Q 007075 84 AAAEMIEKAI 93 (619)
Q Consensus 84 eA~~~~~~al 93 (619)
+|++.+++..
T Consensus 205 ~a~~~l~~l~ 214 (409)
T TIGR00540 205 ALDDIIDNMA 214 (409)
T ss_pred HHHHHHHHHH
Confidence 5544444333
No 187
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.89 E-value=3e-08 Score=105.21 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=132.7
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHC-----CCceEEEeccC-CC-----CHHHHHHHHHHHHHcCCCCC
Q 007075 351 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAV-----PNSRLVVKCKP-FC-----CDSVRHRFLSTLEQLGLESL 417 (619)
Q Consensus 351 ~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~-----P~a~l~l~g~~-~~-----~~~~~~~l~~~~~~~Gi~~~ 417 (619)
.+..+..+.|.++|++ -|...-.+.++....... +.-++.+.|+. .+ .-....+|++.+++.++..+
T Consensus 267 ~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~ 346 (495)
T KOG0853|consen 267 RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQ 346 (495)
T ss_pred eeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCc
Confidence 3456657789999988 477777888888777777 45677777632 11 22456789999999999768
Q ss_pred cEEEcCCccCcHHHHHhcccCcEeecCCC-CCCchhHHHhhhcCCcEEec-cCCccccchhHHHHHhcCCCcccc-CCHH
Q 007075 418 RVDLLPLILLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKHLIA-KNED 494 (619)
Q Consensus 418 rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~-~~g~~t~~eAl~~GvPvVt~-~g~~~~~r~~~~~l~~~gl~~~v~-~~~~ 494 (619)
.|.|+.... +.+-..++..+...+-+.. ..+|.|++|||++|+|||+. .|.+.-. ...|..++.. .+.+
T Consensus 347 ~v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~Ei-------V~~~~tG~l~dp~~e 418 (495)
T KOG0853|consen 347 FVWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEI-------VVHGVTGLLIDPGQE 418 (495)
T ss_pred eEEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEE-------EEcCCcceeeCCchH
Confidence 899999876 4555666677777765554 49999999999999999954 4532111 1114444443 4555
Q ss_pred ---HHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 495 ---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 495 ---~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
.+.+...++.+||+.+.+++++.++++... |++..|.+++.+...+
T Consensus 419 ~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 419 AVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLGK 467 (495)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHh
Confidence 599999999999999999999999998754 8887777777766653
No 188
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=8.1e-09 Score=111.30 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=130.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----------------------------HHHHHHHHHHHcCCHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----------------------------ACNNLGVIYKDRDNLDKAVEC 54 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------------------a~~~la~~~~~~g~~~~A~~~ 54 (619)
+...+|...|+..+|.+...+-++ .|.++. |...+|......++|+++.++
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKH 507 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHH
Confidence 344566677777777777666666 333333 334444444556899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 55 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 55 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 134 (619)
++..++++|-....|+++|.+..+.++++.|.++|.+++.++|++.++|+|++..|...|+..+|...+.++++.+-++.
T Consensus 508 le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 508 LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 135 NAGQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 135 ~a~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
..|-|+.+ .....|+.+++.+++.+...
T Consensus 588 ~iWENyml--vsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 588 QIWENYML--VSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eeeechhh--hhhhcccHHHHHHHHHHHHH
Confidence 88888544 44677888998888876544
No 189
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=4.6e-09 Score=86.29 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007075 12 LKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 89 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 89 (619)
|++++|+.+|+++++.+|. +...++.+|.+++..|++++|++.+++ .+.++.+....+.+|.++..+|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555554442 233344445555555555555555544 4444444444444444444555555544444
Q ss_pred HH
Q 007075 90 EK 91 (619)
Q Consensus 90 ~~ 91 (619)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.89 E-value=7.5e-09 Score=80.43 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 65 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 65 (619)
.+|..++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 445555555555555555555555555555555555555555555555555555555555544
No 191
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.89 E-value=1.7e-08 Score=99.91 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=135.9
Q ss_pred CCCeEEEecC--CCCcCCHHHHHHHHHHHHHCCC------ceEEEeccCC--CCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 007075 355 NGFITFGSFN--NLAKITPKVLQVWARILCAVPN------SRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPL 424 (619)
Q Consensus 355 ~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~P~------a~l~l~g~~~--~~~~~~~~l~~~~~~~Gi~~~rv~f~g~ 424 (619)
+..++.-+++ |+.|.|+ ++++++--+.+.|. .+|+++|+-. .+......|+.+++++.|+ +.|.|.-.
T Consensus 267 ~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N 344 (465)
T KOG1387|consen 267 ERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKN 344 (465)
T ss_pred CcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEec
Confidence 3444555666 6689999 88888776666555 7999998543 3455668899999999998 77999999
Q ss_pred ccCcHHHHHhcccCcEeecCCC-CCCchhHHHhhhcCC-cEEeccCCccccchhHHHHHhcC-CCccccCCHHHHHHHHH
Q 007075 425 ILLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGV-PCVTMAGSVHAHNVGVSLLTKVG-LKHLIAKNEDEYVQLAL 501 (619)
Q Consensus 425 ~~~~~~~~~~~~~~Dv~Ldt~~-~~g~~t~~eAl~~Gv-PvVt~~g~~~~~r~~~~~l~~~g-l~~~v~~~~~~y~~~a~ 501 (619)
+| .++...+++.|-+-+.+-. ..+|.++.|+|++|+ ||+--.|...-.=|. .-.| ..++.+.|.+||++...
T Consensus 345 ~P-y~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~----~~~G~~tGFla~t~~EYaE~iL 419 (465)
T KOG1387|consen 345 VP-YEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVT----PWDGETTGFLAPTDEEYAEAIL 419 (465)
T ss_pred CC-HHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeee----ccCCccceeecCChHHHHHHHH
Confidence 98 7999999999999998885 488999999999997 444333321111111 1112 35688999999999998
Q ss_pred Hhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 502 QLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 502 ~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
+... |.+.+..+|...|..+. .|+...|-++++..+..+.+
T Consensus 420 kIv~~~~~~r~~~r~~AR~s~~---RFsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 420 KIVKLNYDERNMMRRNARKSLA---RFGELKFDKDWENPICKLLE 461 (465)
T ss_pred HHHHcCHHHHHHHHHHHHHHHH---HhhHHHHHHhHhHHHHHhhc
Confidence 8877 67778888988887654 38888999999988777654
No 192
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=6.4e-09 Score=85.42 Aligned_cols=82 Identities=29% Similarity=0.434 Sum_probs=73.9
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 44 DRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 121 (619)
Q Consensus 44 ~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~ 121 (619)
+.|++++|+.+++++++..|. +...++.+|.+++..|++++|+..+++ .+.++.+...++.+|.++.++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999999999995 466788899999999999999999999 88889889999999999999999999999
Q ss_pred HHHHH
Q 007075 122 AYEQC 126 (619)
Q Consensus 122 ~~~~a 126 (619)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 193
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=1.6e-07 Score=92.61 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=122.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 77 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 77 (619)
.|-.+|....+|++|++..++...+.++. +..|..|+..+....+.++|...+.+|++.+|++..+-..+|.++.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 56789999999999999999999987764 4568889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 78 VQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~~-~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 134 (619)
..|+|+.|++.++.+++.+|.+ +++...|-.+|..+|+.++.+..+.++.+..++..
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 9999999999999999999997 46788899999999999999999999999887753
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.87 E-value=1.7e-07 Score=90.74 Aligned_cols=153 Identities=22% Similarity=0.287 Sum_probs=120.8
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~ 74 (619)
+|..|..++..|+|.+|+..|++.+...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3778999999999999999999999988764 67899999999999999999999999999998865 47888888
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 75 VYTVQG-----------KMDAAAEMIEKAIAANPTYAEA-----------------YNNLGVLYRDAGSISLAIDAYEQC 126 (619)
Q Consensus 75 ~~~~~g-----------~~~eA~~~~~~al~~~p~~~~a-----------------~~~Lg~~~~~~g~~~eA~~~~~~a 126 (619)
+++.+. ...+|+..+++.++..|++..+ -+.+|..|.+.|.+..|+..++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 876543 3458999999999999986321 244688899999999999999999
Q ss_pred HHhCCCCHHHHHH-HHHHHHHhhcCCcH
Q 007075 127 LKIDPDSRNAGQN-RLLAMNYINEGHDD 153 (619)
Q Consensus 127 l~~~P~~~~a~~~-~~la~~~~~~g~~~ 153 (619)
++.-|+....... ..+...|...|..+
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 9999998765332 23566777777655
No 195
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.86 E-value=1.4e-07 Score=101.13 Aligned_cols=156 Identities=13% Similarity=0.024 Sum_probs=98.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEAC-NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
+.+....|++++|..+|+++.+.+|++..+. ...+.++...|++++|.+.++++.+.+|+++.++..++.+|...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 3444677777777777777777777764332 344677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 84 AAAEMIEKAIAA------------------------------------------NPTYAEAYNNLGVLYRDAGSISLAID 121 (619)
Q Consensus 84 eA~~~~~~al~~------------------------------------------~p~~~~a~~~Lg~~~~~~g~~~eA~~ 121 (619)
+|+..+.+..+. .|+++.++..++..+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777444443321 23345556666677777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 007075 122 AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 165 (619)
Q Consensus 122 ~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 165 (619)
.++++++..|+ +... .....+..++.+++.+..++|.++
T Consensus 285 ~L~~~l~~~~~-~~l~----~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 285 IILDGLKRQYD-ERLV----LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHhcCCC-HHHH----HHHhhccCCChHHHHHHHHHHHhh
Confidence 77777764333 2211 122233446666666666666544
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=1.3e-08 Score=79.06 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 38 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 99 (619)
Q Consensus 38 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 99 (619)
+|..+...|++++|+++|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555555555555555555555555555555555543
No 197
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=6e-08 Score=110.34 Aligned_cols=125 Identities=16% Similarity=0.091 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS--------------- 66 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~--------------- 66 (619)
..|...+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.+|... .++...+.+.
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 45778888999999999999999999999999999999999999988887766 6666655555
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 67 ----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 67 ----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.+++.||.||-++|++++|...|+++++.+|+++.+++++|..|... +.++|++++.+|++.
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999 999999999999876
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=98.83 E-value=6.9e-08 Score=87.55 Aligned_cols=107 Identities=9% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 28 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 28 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
.++..+..+..|.-++..|++++|...|+-...++|.+...+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 108 VLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 108 ~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
.||..+|+.++|+.+|+.+++ .|.+..
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 999999999999999999988 455443
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=1e-07 Score=95.39 Aligned_cols=107 Identities=25% Similarity=0.330 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 007075 31 CAEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAY 103 (619)
Q Consensus 31 ~~~a~~~la~~~-~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~ 103 (619)
+....+..|..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456677777765 56789999999999999999987 4789999999999999999999999999988874 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 104 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 104 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
+.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999886543
No 200
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.81 E-value=2.1e-07 Score=90.61 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=81.4
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccC
Q 007075 359 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 438 (619)
Q Consensus 359 ~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~ 438 (619)
.+|.++. .|....+++++.++.++.|+.+++++|.+.. ...........+.. ++|.+.|.++..++...+++.+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcC
Confidence 4555443 5999999999999999999999999997622 23333335566776 8999999985445555566669
Q ss_pred cEeecCCCC-CCchhHHHhhhcCCcEEeccCC
Q 007075 439 DISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 469 (619)
Q Consensus 439 Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~ 469 (619)
|+++.|+.. +.+++++|||+||+|||+....
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 999999976 6699999999999999986654
No 201
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=3.6e-08 Score=109.14 Aligned_cols=152 Identities=19% Similarity=0.265 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----------------------
Q 007075 12 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS----------------------- 68 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~----------------------- 68 (619)
++...|...|-+++++++..+.++..||.+|.+..+...|.++|++|.++++.+..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666655443
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 69 -------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 69 -------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
|..+|..|...++...|+..++.+++.+|++.++|..+|.+|...|++..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 4445666666777778888999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 007075 136 AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 165 (619)
Q Consensus 136 a~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 165 (619)
..+. .+...+..|++.++...+......
T Consensus 632 ~~fk--~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 632 GRFK--EAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHH--HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6655 566667788888887776655443
No 202
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.80 E-value=5e-08 Score=105.58 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=82.7
Q ss_pred EEEcCCccC------cHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcC----CCc
Q 007075 419 VDLLPLILL------NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG----LKH 487 (619)
Q Consensus 419 v~f~g~~~~------~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~g----l~~ 487 (619)
|+|.|.--+ ..++..+++.||+++-||.| ++|.|.+|||+||+||||.....+.. .+-...| -.-
T Consensus 450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~----~v~E~v~~~~~~gi 525 (590)
T cd03793 450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC----FMEEHIEDPESYGI 525 (590)
T ss_pred EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh----hhHHHhccCCCceE
Confidence 667765321 13467788999999999988 66999999999999999876543311 1111111 112
Q ss_pred cc--------cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 488 LI--------AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 488 ~v--------~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
+| ..+.+++.+...++++. +.++.+.++.+... .+..|+|+.++..+.++|+.+.+
T Consensus 526 ~V~~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r-~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 526 YIVDRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTER-LSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred EEecCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhh
Confidence 23 34677777888887754 56665555544222 34679999999999999998875
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.80 E-value=1.3e-07 Score=94.55 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=74.8
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 007075 2 YNLGVAY-GEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGV 74 (619)
Q Consensus 2 ~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~ 74 (619)
|..|..+ ++.|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4455554 45677888888888888777776 467788888888888888888888888877665 4567777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEA 102 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a 102 (619)
++..+|++++|...|+++++..|+...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 8877888888888888888887776543
No 204
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=2e-07 Score=95.96 Aligned_cols=176 Identities=15% Similarity=0.101 Sum_probs=130.9
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhc
Q 007075 358 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 435 (619)
Q Consensus 358 ~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~ 435 (619)
.++.+++++ .|..+.+++++..+....++..++++|.+... ...+...+.+.+.. +.|.|.|.++ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGLE-DNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCCC-CcEEEecccC-HHHHHHHH
Confidence 567777776 58889999999999888888889999876322 45566677777776 8899999987 46777788
Q ss_pred ccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC-CHHHHHHHHHHhhcCHHHHHHH
Q 007075 436 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALANL 513 (619)
Q Consensus 436 ~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~-~~~~y~~~a~~L~~d~~~~~~l 513 (619)
+.+|+++.|+.+ +.|.+++|||++|+|||+..... ...++..-+...++.. +.+++++....+..+.+.++.+
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~-----~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 349 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGG-----IPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREEL 349 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEECCCCC-----hHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 889999999876 77899999999999999755431 1222322211112333 5899999999999998777777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 514 RMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 514 r~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
....++... ..|+++.++..+.+.|.....
T Consensus 350 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 350 GEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 764444433 458999999999988887653
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=8.8e-08 Score=86.88 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
|..|..++..|++++|...|+-....+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|.|+..+|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 007075 82 MDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~ 100 (619)
.++|..+|+.++. .|.+.
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999999998 45533
No 206
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.77 E-value=1.8e-07 Score=98.42 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=97.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 85 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 85 (619)
..+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445567888888888888877765 5566888888888888899999999888888888888888888888889999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007075 86 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 125 (619)
Q Consensus 86 ~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~ 125 (619)
+.+.+++++..|++...|+.|+.+|..+|++++|+..++.
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999888899999999999998888876653
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=1.9e-07 Score=81.59 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLG 107 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~a~~~Lg 107 (619)
+++++|.++...|+.++|+.+|+++++..... ..++..+|..+..+|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 44455555555555555555555555543222 234455555555555555555555555555454 444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 007075 108 VLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 108 ~~~~~~g~~~eA~~~~~~al 127 (619)
.++...|+.++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
No 208
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.76 E-value=5.9e-07 Score=96.79 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCC
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGK 81 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~g~ 81 (619)
..|......|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+..|++. .+....+.++...|+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 3567788899999999999999999999888889999999999999999999999999999886 466667999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
+++|...+++.++.+|+++.++..++.++...|++++|.+.+.+..+....++.
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999999999999988554443
No 209
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=107.42 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=120.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
|......++|+++..+++..++++|-....|+++|.+..++++++.|.++|.+.+.++|++..+|+|++.+|...|+-.+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 33445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 131 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 131 (619)
|...+++|++.+-+++..|-|.-.+..+.|.+++|+++|.+.+.+.-
T Consensus 572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999987643
No 210
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.75 E-value=1.2e-07 Score=104.18 Aligned_cols=169 Identities=13% Similarity=0.074 Sum_probs=128.3
Q ss_pred CeEEEecCCC-CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCC--------------------
Q 007075 357 FITFGSFNNL-AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-------------------- 415 (619)
Q Consensus 357 ~~~f~~~~~~-~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~-------------------- 415 (619)
.+++....|+ .|-....++++.+++.++|++.|.+.|.+.. ......+++.+++.+++
T Consensus 321 ~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (519)
T TIGR03713 321 TEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPIL 399 (519)
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcc
Confidence 3334343355 7888999999999999999999999887622 23456666666666554
Q ss_pred --------CCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCc
Q 007075 416 --------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH 487 (619)
Q Consensus 416 --------~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~ 487 (619)
.++|.|.|... ..+....|..+.|+||++...|-.|.+||++.|+|+|- .|.+-+..-|.++
T Consensus 400 ~~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIn---------yg~~~~V~d~~NG 469 (519)
T TIGR03713 400 QTDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQIN---------KVETDYVEHNKNG 469 (519)
T ss_pred cchhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeee---------cCCceeeEcCCCc
Confidence 16999999854 35899999999999999987443399999999999992 2333344458888
Q ss_pred cccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 007075 488 LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 539 (619)
Q Consensus 488 ~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~ 539 (619)
++..|.+++.+++..++.|+...+++....-+.+ ..|+.+.+.+++++.
T Consensus 470 ~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~---~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 470 YIIDDISELLKALDYYLDNLKNWNYSLAYSIKLI---DDYSSENIIERLNEL 518 (519)
T ss_pred EEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHhhHHHHHHHHHhh
Confidence 8899999999999999999988887777665543 347777777766653
No 211
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.74 E-value=3.7e-07 Score=97.29 Aligned_cols=129 Identities=19% Similarity=0.124 Sum_probs=93.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
-+.....+++.++|+.+++++++..|++...|..+|+++.+.++.+.|.+.|...++..|+....|..|+.+-...|+.-
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 34555667888889998899998889888888899999888888888888888888888888888888877777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.|...++++...+|++...|...-..-...|+.+.|.....+||+-.|+
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 7777777777777666555555444444444444444444444444443
No 212
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=1.1e-06 Score=87.15 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=121.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNN------------LGVIYKDRDNLDKAVECYQMALSIKPNFSQ 67 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~------------la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 67 (619)
+.|.+++++|++++|+.-|++.++.+|++ -+++.. ....+...|++..|+++..+.+++.|-++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 56889999999999999999999999854 233322 233345678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
.+...+.+|...|+...||..++.+-++..++.+.++.+..+++..|+.++++...+++|+++|++...+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986544
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-07 Score=95.26 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
.++.|++.|+..+++|.+|+....++|.++|+|..+++..|.++..+|+|+.|+..|+++++++|++-.+...|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888777777665
Q ss_pred cCCHHHH-HHHHHHHHHh
Q 007075 113 AGSISLA-IDAYEQCLKI 129 (619)
Q Consensus 113 ~g~~~eA-~~~~~~al~~ 129 (619)
..++.+. .+.|.+++..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 5544433 4455444443
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3.3e-07 Score=89.29 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=136.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 88 (619)
.+..+|+.|++++..-.+.+|.+-..+..||.||+...++..|.+||++.-.+.|...+.....+..+++.+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999988899999999999988765
Q ss_pred HHH----------HHHh--------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 89 IEK----------AIAA--------------------NP--TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 89 ~~~----------al~~--------------------~p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
... ++++ -| +.....++.|.++++.|++++|++-|+.+++...-++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 432 2222 23 456778899999999999999999999999998777776
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q 007075 137 GQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLY 170 (619)
Q Consensus 137 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~ 170 (619)
.++ +++.+...++++.+++...+..++-.+..
T Consensus 181 AYn--iALaHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 181 AYN--LALAHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHH--HHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 666 77888899999999888877776644433
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.4e-07 Score=90.61 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 007075 47 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAY 123 (619)
Q Consensus 47 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g---~~~eA~~~~ 123 (619)
+.++-+.-++.-++.+|++.+-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35667778888899999999999999999999999999999999999999999999999999988764 456899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 124 EQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 124 ~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
+++++++|++..+.+. ++..+..+|++.++....+...+
T Consensus 217 ~~al~~D~~~iral~l--LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 217 RQALALDPANIRALSL--LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHhcCCccHHHHHH--HHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999988776 88899999999988877665543
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.68 E-value=3.3e-08 Score=99.94 Aligned_cols=160 Identities=24% Similarity=0.316 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDN--------------------LDKAVECYQ 56 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~--------------------~~~A~~~~~ 56 (619)
|||+.+..+|.|++|+.++.+-+.+.. ....+++|+|.+|...|+ ++.|.++|+
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 577788888888888888777665422 235688999999877663 445566666
Q ss_pred HHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007075 57 MALSIKPNFS------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYE 124 (619)
Q Consensus 57 ~al~l~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~ 124 (619)
.-+++..... .++.+||+.|+-+|+|++|+...+.-+.+...+ -.++.|+|.++.-+|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 5555533222 367889999999999999999888877775443 3589999999999999999999999
Q ss_pred HHHHh----CCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 125 QCLKI----DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 125 ~al~~----~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
+.+.+ .....++...+.++..|.-..++++++..+.+-
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 87644 444556666677777777777777777776544
No 217
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.68 E-value=7.6e-07 Score=95.01 Aligned_cols=155 Identities=14% Similarity=0.050 Sum_probs=136.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 7 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 86 (619)
Q Consensus 7 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 86 (619)
......++++|..+|.++....| ....|+.-+.+...+++.++|+.+++++++..|++...|..+|+++.++++.+.|.
T Consensus 627 le~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 44567789999999999988665 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 87 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 87 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
+.|...++..|+.+..|..|+.+-.+.|+.-.|...++++...||++...|.. ....-+..|+.+.+-....+..+
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle--~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE--SIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH--HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877655 44455677777766554444333
No 218
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=5.1e-07 Score=78.83 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=85.1
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~ 74 (619)
+|++|.++...|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3789999999999999999999999975443 578999999999999999999999999999888 7788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIA 94 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~ 94 (619)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988775
No 219
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=2.2e-06 Score=93.56 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 147 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~ 147 (619)
+++.++..|...|++++|++++++|++..|..++.|+..|.+|...|++.+|.++++.+-++++.+...-.. .+..++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK--~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK--CAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH--HHHHHH
Confidence 446677777788888888888888888888888888888888888888888888888888887776543322 445556
Q ss_pred hcCCcHHHHHHHH
Q 007075 148 NEGHDDKLFEAHR 160 (619)
Q Consensus 148 ~~g~~~~a~~~~~ 160 (619)
+.|+.++|.+...
T Consensus 274 Ra~~~e~A~~~~~ 286 (517)
T PF12569_consen 274 RAGRIEEAEKTAS 286 (517)
T ss_pred HCCCHHHHHHHHH
Confidence 6666666555443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=1.3e-07 Score=98.78 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=62.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 61 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 61 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a---~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.+|+++.+++|+|.+|+.+|+|++|+.+|+++++++|++.++ |+|+|.+|..+|++++|++++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 368888899999999999999999999999999999998855 999999999999999999999999987
No 221
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=5.5e-07 Score=102.64 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=116.5
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 007075 26 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------ 99 (619)
Q Consensus 26 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------ 99 (619)
..+|.+..++..|...+...+++++|++..+.+++.+|+...+++.+|.++++.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 357899999999999999999999999999999999999999999999999999998877655 555554444
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 007075 100 -------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 166 (619)
Q Consensus 100 -------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 166 (619)
-.+++.||.||.++|+.++|...|+++++++|+++.+..+ +|..|... +.++|.+.+.+...++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn--~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKK--LATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHH--HHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999888 56666666 7777777666554443
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=84.22 Aligned_cols=105 Identities=27% Similarity=0.314 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 109 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-----~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~ 109 (619)
+-.-|+-++..|+|++|..-|..|+.+.|.... .+.|.|.++.++++++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 445678889999999999999999999997654 678999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 110 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 110 ~~~~g~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
|.++.++++|++-|++.++.+|....+.-.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998765543
No 223
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=1.2e-06 Score=93.69 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=135.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..|..+..+|+-++|..+.+.++..++.+.-+|..+|.++...++|++|+++|+.|+.+.|+|.+.+..++.+..+++++
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHH---HHHHHHHhhcCCcHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID---PDSRNAGQN---RLLAMNYINEGHDDKLF 156 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~a~~~---~~la~~~~~~g~~~~a~ 156 (619)
+.....-.+.+++.|..-..|..++..+...|++..|....+...+.. |+....... +.........|..++++
T Consensus 126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999999999999999999999999999998888777654 443322221 11233445566666666
Q ss_pred HHHHH
Q 007075 157 EAHRD 161 (619)
Q Consensus 157 ~~~~~ 161 (619)
+....
T Consensus 206 e~L~~ 210 (700)
T KOG1156|consen 206 EHLLD 210 (700)
T ss_pred HHHHh
Confidence 65543
No 224
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.60 E-value=7.1e-06 Score=75.08 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=126.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS-IKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
+.+..++=+.+.+.....+.++..|.. .-.+.||+.+.++|++.||...|++++. +..+++..+..+++..+..+++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 344455556666666666666666653 3467899999999999999999999987 57788899999999999999999
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 84 eA~~~~~~al~~~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+|...+++..+.+|. .++.+..+|..|..+|++++|...|+.++...|+.. +... .+.....+|..+++-+.+.+
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~--Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIY--YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHH--HHHHHHHhcchhHHHHHHHH
Confidence 999999999999885 467888999999999999999999999999998853 3333 34445567776666666666
Q ss_pred HHHHHHh
Q 007075 162 WGKRFMR 168 (619)
Q Consensus 162 ~~~~~~~ 168 (619)
..+...+
T Consensus 219 v~d~~~r 225 (251)
T COG4700 219 VVDTAKR 225 (251)
T ss_pred HHHHHHh
Confidence 6555444
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.60 E-value=1.9e-06 Score=78.81 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTV 78 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~ 78 (619)
+.||+++.+.|++.+|..+|++++. +..+++..+..+++..+..+++.+|...+++..+.+|. .++.+..+|.+|..
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 5789999999999999999999986 67888999999999999999999999999999999885 45678889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
+|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-+....+
T Consensus 173 ~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 173 QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999998 77888899999999999988877665543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=1.2e-06 Score=85.70 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 108 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~Lg~ 108 (619)
.|+.|.-++..|+|.+|...|..-++..|+.. .+++.||.+++.+|++++|...|..+.+-.|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45555555555666666666666666555433 355666666666666666666666666655543 455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 109 LYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 109 ~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
++..+|+.++|...|+++++.-|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666666666666666666655443
No 227
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.56 E-value=2.5e-07 Score=72.44 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 73 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 73 (619)
++.|++++|+..|++++..+|++..+++.+|.+|...|++++|.+.+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 44566666666666666666666666666666666666666666666666666666555554444
No 228
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=6e-06 Score=75.31 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=98.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 007075 44 DRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSIS 117 (619)
Q Consensus 44 ~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~ 117 (619)
..++..++.+.+++.++..|+. ..+.+.+|.+++..|++++|+..|++++...|+. ..+...|+.++..+|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5789999999999999999998 4578889999999999999999999999988665 457888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 118 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 118 eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+|+..++. ..+.........+.+.+|...|+.++|...++.
T Consensus 103 ~Al~~L~~---~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQ---IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHh---ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999966 233334555666799999999999999888764
No 229
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.55 E-value=1.4e-06 Score=94.80 Aligned_cols=128 Identities=22% Similarity=0.239 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
..|...+..+...++.++|..|+.++-+++|..+..++..|.++..+|++.+|.+.|..|+.++|+++.....+|.++.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 113 AGSISLAID--AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 113 ~g~~~eA~~--~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
.|+..-|.. .+..+++++|.++++|++ ++.++...|+.+++.+.+...
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~--LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYY--LGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHccchHHHHHHHHHH
Confidence 999888888 999999999999999999 888999999999887776644
No 230
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.54 E-value=3.6e-07 Score=93.03 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=112.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--C
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--K 81 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g--~ 81 (619)
.|.++...|++++|+..+.+. .+.++......++...++++.|.+.++.+-+.+.+..-.....+.+....| +
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchh
Confidence 456777788999888877653 567888888899999999999999999999988876666655666666666 5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCc
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 152 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~ 152 (619)
+.+|...|++..+..+..+..++.++.++..+|++++|.+.++++++.+|+++....|+ ..+....|+.
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl--iv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL--IVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH--HHHHHHTT-T
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH--HHHHHHhCCC
Confidence 99999999998888888899999999999999999999999999999999999998884 4444455555
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=3.8e-07 Score=95.31 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=66.5
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 27 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAAN 96 (619)
Q Consensus 27 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~ 96 (619)
.+|+++.+|+|+|.+|..+|+|++|+.+|+++++++|++.++ |+|+|.+|..+|++++|++++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 378899999999999999999999999999999999999865 9999999999999999999999999983
No 232
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.54 E-value=9.3e-07 Score=90.19 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC----HHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNP--H----CAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNF----SQSL 69 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~--p~~----~~~~ 69 (619)
...|+.|...|++++|.++|.++....- + -..++...+.++... ++++|+++|++|+++. -+. +..+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3567889999999999999999987532 1 244667777777666 9999999999999872 222 3478
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 007075 70 NNLGVVYTVQ-GKMDAAAEMIEKAIAANPT--Y----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS----RNAGQ 138 (619)
Q Consensus 70 ~~lg~~~~~~-g~~~eA~~~~~~al~~~p~--~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~a~~ 138 (619)
.++|.+|... |++++|+++|++|++.... . ..++.++|.++..+|+|++|++.|++.....-++ ..+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 8999999998 9999999999999988432 1 3567889999999999999999999998753322 12222
Q ss_pred -HHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 139 -NRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 139 -~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
.+...++++..|+...+.+.+.++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223456777788876666655554
No 233
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=5.4e-07 Score=71.58 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=28.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
+|...+++++|+++++++++++|+++..+..+|.++..+|++++|++.++++++..|++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3444444444444444444444444444444444444444444444444444444444433
No 234
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=2.8e-07 Score=72.08 Aligned_cols=56 Identities=39% Similarity=0.491 Sum_probs=30.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 78 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
..|++++|+..|+++++.+|++..+++.+|.+|...|++++|...+++++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44555555555555555555555555555555555555555555555555555554
No 235
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.7e-06 Score=79.94 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=91.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
-|+-++..|+|++|..-|..||..-|..+ -.|.|.|.++..++.++.|++...++++++|.+..++...+.+|.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 47788999999999999999999988753 4688999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEA 102 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a 102 (619)
+.+|++|+..|++.++.+|..-++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999986543
No 236
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.49 E-value=5e-06 Score=90.08 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=118.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCCC-----HHHHHHHHHHHHHc-------CCCCC
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQL-------GLESL 417 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~~-----~~~~~~l~~~~~~~-------Gi~~~ 417 (619)
+..++.++.|+ .|..+.-++++.++|++.|+ ++|++++.+... ..++.++.+.+.+. |.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 44567788998 69999999999999999996 688888766421 23555555555543 555 4
Q ss_pred cEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCC----cEEeccCCccccchhHHHHHhcCCCccc--c
Q 007075 418 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 490 (619)
Q Consensus 418 rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~Gv----PvVt~~g~~~~~r~~~~~l~~~gl~~~v--~ 490 (619)
.+.|.+.++ .++..++|+.|||+|.|+-. +.+.+..|+++|+. |+|. |+.++.- ..+. +.++ +
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 567888888 78999999999999999988 55789999999988 6664 3333111 1111 1222 4
Q ss_pred CCHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 491 KNEDEYVQLALQLASDVT-ALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 491 ~~~~~y~~~a~~L~~d~~-~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
.|.++.++...+.++.+. .+++--+.+++.+. .+|...|++.+-..++
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~---~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVN---YYDVQRWADEFLAAVS 481 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHhh
Confidence 688888888877777654 44333344444433 3588888887765443
No 237
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.49 E-value=7e-07 Score=70.90 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=35.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 40 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 40 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
.+|...+++++|+++++++++++|+++..+..+|.++..+|++++|+..++++++..|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544443
No 238
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=2.3e-06 Score=85.30 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=87.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCC------
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS--------------IKP------ 63 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--------------l~p------ 63 (619)
+|.+++..|+|++|+..|+.+.+.+..+.+.+.+||.|++-+|.|.+|.....++-+ ++.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 566677777777777777777666555667777777777777777777665554421 110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 64 ------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 64 ------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
+..+-...|+.+.+..-.|++|++.|++.+.-+|+......+++.||.++.-++-+.+.+.--++..|+...+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 11112334455566666677777777777777777776677777777777777777777777777777766554
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.47 E-value=2.6e-06 Score=75.71 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 007075 31 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYN 104 (619)
Q Consensus 31 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~ 104 (619)
.+..++.-|...++.|+|++|++.++......|.. ..+.+.|+.+|+..+++++|+..+++-++++|+++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35566777777777777777777777777766543 35677777777777777777777777777777764 4567
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 007075 105 NLGVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 105 ~Lg~~~~~~g~---------------~~eA~~~~~~al~~~P~~~~a 136 (619)
..|.+++.+.. ..+|...|++.++.-|++.-+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 77777777665 778888888888888887543
No 240
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.46 E-value=1.3e-05 Score=79.76 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=105.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 007075 30 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAY 103 (619)
Q Consensus 30 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~ 103 (619)
..+..++..|..+...|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 367788899999999999999999999999999988764 4899999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCHHHH---H------------HHHHHHHHhhcC
Q 007075 104 NNLGVLYRDAGS------------------ISLAIDAYEQCLKIDPDSRNAG---Q------------NRLLAMNYINEG 150 (619)
Q Consensus 104 ~~Lg~~~~~~g~------------------~~eA~~~~~~al~~~P~~~~a~---~------------~~~la~~~~~~g 150 (619)
+.+|.++..+++ ..+|+..|++.++.-|+..-+. . .+..+..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 889988655541 3578899999999999875322 1 112344456666
Q ss_pred CcHHHHHHHHHHHH
Q 007075 151 HDDKLFEAHRDWGK 164 (619)
Q Consensus 151 ~~~~a~~~~~~~~~ 164 (619)
.+..+...++...+
T Consensus 190 ~y~AA~~r~~~v~~ 203 (243)
T PRK10866 190 AYVAVVNRVEQMLR 203 (243)
T ss_pred chHHHHHHHHHHHH
Confidence 66555554444433
No 241
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.46 E-value=4.4e-07 Score=89.93 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 114 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 114 (619)
.-..|+-|+.+|.|++|+.||.+++..+|.++..+.|.+.+|++++++..|...+..|+.++..+..+|...|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Q 007075 115 SISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 115 ~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
+..||.+.++.+|++.|++.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHH
Confidence 99999999999999999975543
No 242
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.44 E-value=1.8e-05 Score=93.71 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYT 77 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 77 (619)
.+-..|.+.|++++|.+.|++.... .| +...|..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 3445556666666666666665442 23 23455555556666666666666666665553 334445555555555
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhcCCcHH
Q 007075 78 VQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD-SRNAGQNRLLAMNYINEGHDDK 154 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~a~~~~~la~~~~~~g~~~~ 154 (619)
+.|++++|+..|++..+. .|+ ...|..+...|.+.|++++|.+.++++.+.... +...+ ..+...|.+.|+.++
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty--nsLI~ay~k~G~~ee 702 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY--SSLMGACSNAKNWKK 702 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHH
Confidence 566666666655555544 232 344555555555555555555555555543211 11111 123344445555555
Q ss_pred HHHHHHH
Q 007075 155 LFEAHRD 161 (619)
Q Consensus 155 a~~~~~~ 161 (619)
|.+.+++
T Consensus 703 A~~lf~e 709 (1060)
T PLN03218 703 ALELYED 709 (1060)
T ss_pred HHHHHHH
Confidence 4444443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=3.9e-06 Score=82.20 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=94.3
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~ 74 (619)
+|+.|..++..|+|.+|...|...++..|+. +.++++||.+++.+|++++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3788999999999999999999999998885 6799999999999999999999999999986654 578999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 105 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 105 (619)
+...+|+.++|...|++.++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998766543
No 244
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.43 E-value=7.6e-07 Score=88.32 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=98.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..|+.|+++|+|++|+.||.+++..+|.++-.+.|.|..|+.++++..|+.-+..|+.++.....+|...+.+-..+|..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
.+|.+.++.++++.|++.+..-.++
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999766444333
No 245
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.43 E-value=9.6e-06 Score=78.46 Aligned_cols=135 Identities=22% Similarity=0.236 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 007075 31 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYN 104 (619)
Q Consensus 31 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~ 104 (619)
.+..++..|..++..|++.+|++.|++.+...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999998765 46899999999999999999999999999999874 5788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHhhcCCcHHHHHH
Q 007075 105 NLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAG---------------QNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 105 ~Lg~~~~~~g-----------~~~eA~~~~~~al~~~P~~~~a~---------------~~~~la~~~~~~g~~~~a~~~ 158 (619)
.+|.++..+. ...+|+..|+..++.-|++..+. ..+..+..|...|.+..+...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876543 34589999999999999985432 112245567777777766666
Q ss_pred HHHHHHH
Q 007075 159 HRDWGKR 165 (619)
Q Consensus 159 ~~~~~~~ 165 (619)
++...+.
T Consensus 164 ~~~v~~~ 170 (203)
T PF13525_consen 164 FQYVIEN 170 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 246
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.43 E-value=6.7e-06 Score=88.36 Aligned_cols=127 Identities=11% Similarity=0.141 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CC
Q 007075 371 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AG 449 (619)
Q Consensus 371 ~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g 449 (619)
...++.+.++.+++|++.|=| |.+. ++..+|.+. .+. ++-+.|-|.. ..+.-.+|..||++||++.. +.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~kL~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT---EMSSKLMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC---cccHHHHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccH
Confidence 889999999999999999999 5442 223666666 555 3666666654 34788999999999999998 55
Q ss_pred chhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccc-cCCHHHHHHHHHHhhcCHHHHHHHH
Q 007075 450 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTALANLR 514 (619)
Q Consensus 450 ~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v-~~~~~~y~~~a~~L~~d~~~~~~lr 514 (619)
+.++.||+..|+|||+..-......... . +.++ ..+.++++++.+.++.|++.++..-
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~~~~i~------~-g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~ 419 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHNRDFIA------S-ENIFEHNEVDQLISKLKDLLNDPNQFRELL 419 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCCccccc------C-CceecCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999999999998765422211110 0 2233 3688999999999999997555433
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.42 E-value=6e-06 Score=71.11 Aligned_cols=113 Identities=23% Similarity=0.305 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLY 110 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~~Lg~~~ 110 (619)
+-..|..+.+.|+.+.|++.|.+++.+.|..+.+|+|.+..+.-+|+.++|+..+++++++.-.. -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34556667777777888888888887777777777777777777778888888777777775443 23566777778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHh
Q 007075 111 RDAGSISLAIDAYEQCLKIDPDS----------RNAGQNRLLAMNYI 147 (619)
Q Consensus 111 ~~~g~~~eA~~~~~~al~~~P~~----------~~a~~~~~la~~~~ 147 (619)
..+|+-+.|..-|+.+-++.... ..+.+|.+++..+.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ 172 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD 172 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 88888777777777766553322 24667777776553
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=98.42 E-value=3.4e-06 Score=88.47 Aligned_cols=117 Identities=11% Similarity=0.052 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 13 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 92 (619)
Q Consensus 13 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 92 (619)
+..+|.+..++|++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+++..|.++...|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 007075 93 IAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 93 l~~~p~~~~a~~~Lg~~-~~~~g~~~eA~~~~~~al~~ 129 (619)
++++|....+-...-.+ .+.....++|+..|-+-.+-
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred hccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 99999876654443333 55667788898888765443
No 249
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=3.1e-06 Score=86.27 Aligned_cols=132 Identities=16% Similarity=0.081 Sum_probs=109.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
-.++..+++++.|.+.++..-+.+.+..-.....+.+....| ++++|...|+...+..+..+..+..++.++..+|+|
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 457899999999999999998888776655555555555555 699999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~-~eA~~~~~~al~~~P~~~~a 136 (619)
++|.+.++++++.+|++++++.|++.+...+|+. +.+.+++.+.-..+|+++-.
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999998 66777888888889998643
No 250
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.9e-06 Score=84.62 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=121.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 8 YGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 86 (619)
Q Consensus 8 ~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 86 (619)
+....+|..|+..++-.+..+.... .....+|.|++.+|+|++|...|+-+.+.+.-+.+.+.+|+.+++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567899999999998887665544 677889999999999999999999999987778899999999999999999998
Q ss_pred HHHHHHH--------------HhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 87 EMIEKAI--------------AANP------------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 87 ~~~~~al--------------~~~p------------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
....++- +++. +..+-...|+.+.+..-.|++|++.|.+.+.-+|+....-.+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy- 190 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY- 190 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH-
Confidence 8766542 1111 112233456667777778999999999999999987654444
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHH
Q 007075 141 LLAMNYINEGHDDKLFEAHRDWGKRF 166 (619)
Q Consensus 141 ~la~~~~~~g~~~~a~~~~~~~~~~~ 166 (619)
++++|.+..-++-..+....+.+.+
T Consensus 191 -~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 191 -MALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred -HHHHHHhcchhhhHHHHHHHHHHhC
Confidence 7888887766666666666555443
No 251
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.40 E-value=2.9e-06 Score=77.73 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007075 14 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 90 (619)
Q Consensus 14 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 90 (619)
|+.|.+.++.....+|.+++.+++.|..+.++.++.. +.++ +++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~m---------------------------iedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKM---------------------------IEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHH---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHH---------------------------HHHHHHHHH
Confidence 5566666666666666666666666666655433211 2111 345566667
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 91 KAIAANPTYAEAYNNLGVLYRDAGS-----------ISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 91 ~al~~~p~~~~a~~~Lg~~~~~~g~-----------~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
+|+.++|+..++++++|.+|..++. |++|..+|++|...+|++...+..
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 7777777777777777777665543 678889999999999998655443
No 252
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=8.9e-06 Score=85.70 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 116 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~ 116 (619)
.|-..+...+++++|++.+++..+.+|+ ....++.++...++-.+|+..+.++++.+|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445556778999999999999998875 5566899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 117 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 117 ~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
+.|++..+++.++.|++...|+. |+.+|+..|++++|+..+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~--La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQ--LAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHH--HHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999888 8999999999998886554
No 253
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.38 E-value=1.1e-05 Score=88.57 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=105.1
Q ss_pred hCCCcHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 007075 27 FNPHCAEAC--NNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--------KMDAAAEMIEKAI 93 (619)
Q Consensus 27 ~~p~~~~a~--~~la~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al 93 (619)
..|.+..+| +..|.-+...++ .++|+.+|++|++++|+++.++..++.++.... +..++....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345665554 556666655444 889999999999999999999999888876542 3456666777766
Q ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 94 AA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 94 ~~--~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
.+ +|..+.+|..+|..+...|++++|..+++++++++|+ ..+ +.+++..+...|+.++|.+.+++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a--~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLN--YVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 64 7778899999999999999999999999999999994 444 445888999999999988877654
No 254
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=2.8e-06 Score=94.67 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=114.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 8 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 8 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-----~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
......+.++..++.+++...-+-....+..+..+ ...++...|...+-+++++++..+.++..||.+|...-+.
T Consensus 429 s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm 508 (1238)
T KOG1127|consen 429 SFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM 508 (1238)
T ss_pred hcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 34455566666677666665544433333333222 2345689999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH------------------------------------HHHHHHHcCCHHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNN------------------------------------LGVLYRDAGSISLAIDAYEQC 126 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~------------------------------------Lg~~~~~~g~~~eA~~~~~~a 126 (619)
..|..+|++|.++++.+.++... +|..|.+.++...|+..++.+
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 99999999999999876554333 455566677888889999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 127 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 127 l~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
++.+|.+.+.|.. ++..|...|.+..+.+.+
T Consensus 589 LR~dPkD~n~W~g--LGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 589 LRTDPKDYNLWLG--LGEAYPESGRYSHALKVF 619 (1238)
T ss_pred hcCCchhHHHHHH--HHHHHHhcCceehHHHhh
Confidence 9999998888776 888999999887776655
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.37 E-value=2.1e-05 Score=67.87 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=59.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQG 80 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g 80 (619)
|.++.+.|+.+.|++.|.+++.+-|..+.+|+|.+..+.-+|+.++|++-+++|+++..+. .+++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4555566666666666666666666666666666666666666666666666666664332 235566666666666
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 007075 81 KMDAAAEMIEKAIAANPTY 99 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~ 99 (619)
+-+.|...|+.+-++...+
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 6666666666666665443
No 256
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.37 E-value=3.5e-06 Score=77.22 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHH
Q 007075 46 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----------MDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 46 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-----------~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
.-+++|+.-|+.|+.++|+..++++++|++|..++. |++|..+|++|.+.+|++.....
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 457888888888888888888888888888876553 67888999999999999865433
No 257
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.34 E-value=4.9e-06 Score=89.00 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCC-------------CcEEEcCCccCcHHHHHh
Q 007075 368 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES-------------LRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 368 K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~-------------~rv~f~g~~~~~~~~~~~ 434 (619)
+.-|.++++..++.++ |+.++++...+. ...+.+++.+.+.|+.. +.+.+.+. ..+...+
T Consensus 221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~ 293 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEI 293 (396)
T ss_pred ccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHH
Confidence 4456788888777665 787777653221 22355666666667652 12555444 3577889
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhc----CCCcc-ccCCHHHHHHHHHHhhcCHHH
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHL-IAKNEDEYVQLALQLASDVTA 509 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~----gl~~~-v~~~~~~y~~~a~~L~~d~~~ 509 (619)
|+.||++|.. +|+++.|++.+|+|+|..+++.+ ...+.++... |-... +..+.+..++.+.++..|++.
T Consensus 294 l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 294 LHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred HHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 9999999955 45666999999999999885422 2344444432 33222 345678899999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 510 LANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 510 ~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
++++.+..+.++.. ....+++++.++
T Consensus 368 ~~~~~~~~~~~lg~--~~a~~~ia~~i~ 393 (396)
T TIGR03492 368 LERCRRNGQERMGP--PGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 88877555544321 233455554443
No 258
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.33 E-value=2.8e-05 Score=89.88 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=121.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCce----EEEeccCC-CCHHHHHHHHHHH----HH----cCCC-CCcE
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTL----EQ----LGLE-SLRV 419 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~----l~l~g~~~-~~~~~~~~l~~~~----~~----~Gi~-~~rv 419 (619)
|..++..+.|+ .|..+.-+.+|.+.|++.|+.+ |+-+..+. .+.+..++++..+ .+ .|-. -.=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 44467788998 6999999999999999999853 34333332 1223333333333 22 2321 0115
Q ss_pred EEcCC-ccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhc-----CCcEEeccCCccccchhHHHHHhcCCCccc--c
Q 007075 420 DLLPL-ILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 490 (619)
Q Consensus 420 ~f~g~-~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~-----GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v--~ 490 (619)
++... ++ ..++.++|..+||||.|+-. +.+.+..|+|+| |++|+.--. + ++..| |-..++ +
T Consensus 442 ~~~~~~l~-~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa----G--aa~~L---~~~AllVNP 511 (934)
T PLN03064 442 HHLDRSLD-FHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA----G--AAQSL---GAGAILVNP 511 (934)
T ss_pred EEeccCCC-HHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC----c--hHHHh---CCceEEECC
Confidence 54444 44 68999999999999999987 558899999999 677774111 1 23333 323333 3
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 491 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 491 ~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
.|.++.++.+.+.++ +++.+++..+.+++.+. .+|...|++.+.+.+...+.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~---~~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVT---THTAQEWAETFVSELNDTVV 564 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---cCCHHHHHHHHHHHHHHHHh
Confidence 689999998888777 88888887787877653 37999999998888888774
No 259
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.32 E-value=5.3e-05 Score=89.88 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=130.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNFSQSLNNLGVVY 76 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~ 76 (619)
..+-..|.+.|++++|+..|++..+.. .-+...|..+...|.+.|++++|.+.+++..+. .|+ ...+..+...|
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 456778999999999999999987643 224778999999999999999999999999763 454 56788888899
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhcCCcH
Q 007075 77 TVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDD 153 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~a~~~~~la~~~~~~g~~~ 153 (619)
.+.|++++|.+.|++..+.+ +.+...|+.+...|.+.|++++|++.|++..+. .|+. ..+ ..+...|...|+.+
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~Ty--nsLI~a~~k~G~~e 666 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFF--SALVDVAGHAGDLD 666 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH--HHHHHHHHhCCCHH
Confidence 99999999999999999886 456788999999999999999999999999876 4552 222 23667788899999
Q ss_pred HHHHHHHHHHH
Q 007075 154 KLFEAHRDWGK 164 (619)
Q Consensus 154 ~a~~~~~~~~~ 164 (619)
++.+.+++..+
T Consensus 667 eA~~l~~eM~k 677 (1060)
T PLN03218 667 KAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHH
Confidence 98888776543
No 260
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.32 E-value=1.6e-05 Score=91.77 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQ 79 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 79 (619)
+...|.+.|+.++|++.|++..+. .| +...+..+...+...|+.++|.++|+...+..+ .+...+..+...|.+.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 344444555555555555544432 12 233344444445555555555555555443211 1223445555666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 80 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 80 g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
|++++|.+.+++. ...| +...|..|...+...|+.+.|...+++.+++.|++...+. .+...|...|+.+++.+..
T Consensus 476 G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHH
Confidence 6666666666543 1222 3456777777777788888888888888888887655443 3667788888888877766
Q ss_pred HHHH
Q 007075 160 RDWG 163 (619)
Q Consensus 160 ~~~~ 163 (619)
+...
T Consensus 552 ~~m~ 555 (697)
T PLN03081 552 ETLK 555 (697)
T ss_pred HHHH
Confidence 6543
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.31 E-value=1.9e-05 Score=70.25 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVV 75 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~ 75 (619)
|+-|...++.|+|++|++.|+......|.. ..+...|+.+|+..+++++|+..+++-++++|.++. +++..|.+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 445555666666666666666665555432 345566666666666666666666666666665543 45556666
Q ss_pred HHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 007075 76 YTVQGK---------------MDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 76 ~~~~g~---------------~~eA~~~~~~al~~~p~~~ 100 (619)
++.+.. ..+|...|++.++..|++.
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 655544 5556666666666666543
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.30 E-value=1.3e-06 Score=88.72 Aligned_cols=126 Identities=27% Similarity=0.305 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLN 70 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~ 70 (619)
+||+.|+-.|+|++|+.+-+.-+.+...+ -.++.|+|+++.-+|+++.|+++|++.+.+. .-.++..+
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44555555556666655555544442221 2355556666666666666666555554331 11233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
.||+.|.-..++++||.++.+-+.+.. ....+++.||..+..+|..++|+.+.++.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555666555566666665555544432 2234555556666666666665555555544
No 263
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.30 E-value=8.8e-07 Score=71.41 Aligned_cols=62 Identities=37% Similarity=0.569 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
++.++|.+|..+|++++|+.+|++++++. |....++.++|.++..+|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444444444444444331 111334555555555555555555555555543
No 264
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.29 E-value=1.1e-06 Score=70.92 Aligned_cols=66 Identities=35% Similarity=0.556 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 30 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK----P---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 30 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~----p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 95 (619)
+-..++.++|.+|..+|++++|+++|++++++. + ....++.++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345678899999999999999999999998761 1 22447888999999999999999999998875
No 265
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.29 E-value=6.6e-06 Score=83.95 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=102.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CC----HHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFN--PH----CAEACNNLGVIYKDR-DNLDKAVECYQMALSIKP--NF----SQSL 69 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~----~~~a~~~la~~~~~~-g~~~~A~~~~~~al~l~p--~~----~~~~ 69 (619)
+.+.++.+. ++++|+.+|++|+.+. .+ -+.++..+|.+|... +++++|+++|++|+++.. +. ...+
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 344555444 9999999999999863 11 256789999999998 999999999999998732 22 2367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 70 NNLGVVYTVQGKMDAAAEMIEKAIAANPTY----A---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 70 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~---~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
.++|.++...|+|++|++.|++.....-+. . ..+...+.|+...|+...|...+++....+|.....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 889999999999999999999998764321 1 345677889999999999999999999999876543
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.29 E-value=7.9e-05 Score=72.48 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=126.6
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGV 74 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~ 74 (619)
||+-|...++.|++++|+..|+......|.. ..+...++..+++.+++++|+...++-+++.|.++. +++..|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 4778899999999999999999999887765 568899999999999999999999999999887764 6777788
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 75 VYTVQ--------GKMDAAAEMIEKAIAANPTYAE-----------------AYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 75 ~~~~~--------g~~~eA~~~~~~al~~~p~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
+++.. .-..+|+..+++.++..|++.- --+..|..|.+.|.+..|+..++++++.
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 77653 2246788999999999998621 1244688999999999999999999998
Q ss_pred CCCCHHHHHHH-HHHHHHhhcCCcHHHHHHHH
Q 007075 130 DPDSRNAGQNR-LLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 130 ~P~~~~a~~~~-~la~~~~~~g~~~~a~~~~~ 160 (619)
-|+.....-.+ .+...|...|-.+++-...+
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 77665433221 25566777777766555443
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=1.3e-05 Score=75.20 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
.++..|..|-..|-+.-|.--|.+++.+.|+.+.+++.||..+...|+++.|.+.|...++++|.+--++.|.|..++.-
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 34444444444444444444455555555555555555554444455555555555555555555444455555444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 007075 114 GSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 114 g~~~eA~~~~~~al~~~P~~~ 134 (619)
|+++-|.+.+.+-.+.+|+++
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred CchHhhHHHHHHHHhcCCCCh
Confidence 555555444444444444443
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.25 E-value=0.00013 Score=69.36 Aligned_cols=131 Identities=33% Similarity=0.544 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV-IYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYT 77 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~~~ 77 (619)
+..+..+...+++.+++..+.+++...+.........+. ++...+++++|...+++++...| ........++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence 345566666667777777777777766665444445555 67777777777777777766655 34445555666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 78 VQGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~-~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
..+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 777777777777777777777 5777777777777777777777777777777776
No 269
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.25 E-value=4.2e-05 Score=82.02 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=108.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 354 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
.+..++|.++|+.....+.+++...+.+.+.+-..++..|.+.. ...+ . .+ +++|.+.++++ .. .
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~----~--~~-~~~v~~~~~~p-~~---~ 287 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADL----G--EL-PPNVEVRQWVP-QL---E 287 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHh----c--cC-CCCeEEeCCCC-HH---H
Confidence 34567899999987666778887777887777555555554421 1111 1 13 37899999986 33 4
Q ss_pred hcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc---CCHHHHHHHHHHhhcCHHHH
Q 007075 434 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~L~~d~~~~ 510 (619)
++..+|+++. .+|..|++|||++|+|+|.++...- ...-+..+...|....+. -+.++..+...++..|++.+
T Consensus 288 ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 288 ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 5677999982 4666799999999999998775322 223445566667665443 25688888888999999876
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 007075 511 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 540 (619)
Q Consensus 511 ~~lr~~~r~~~~~~~~~~~~~~~~~le~~y 540 (619)
++++ .+++.+... -..+..++.+|+..
T Consensus 364 ~~~~-~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 364 ERLR-KMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHHH-HHHHHHHHc--CCHHHHHHHHHHhh
Confidence 6653 334444332 35666676666654
No 270
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.23 E-value=4.1e-05 Score=83.77 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 111 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~ 111 (619)
.++++.+|..|...|++++|+++.++|++..|..++.+...|.++...|++.+|...++.|..++..+-......+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q 007075 112 DAGSISLAIDAYEQCLKIDPDS-------RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 169 (619)
Q Consensus 112 ~~g~~~eA~~~~~~al~~~P~~-------~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~ 169 (619)
+.|++++|.+.+..-.+.+-+. ...|+..-.+.+|...|++..|+..+....+.|...
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999987776544211 124555556888889999888888777766665543
No 271
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.23 E-value=1.9e-05 Score=91.16 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=123.0
Q ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 007075 1 MYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTV 78 (619)
Q Consensus 1 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 78 (619)
|..+...|.+.|++++|++.|++..+.. .-+...+..+...+...|++++|.+.++.+++.. +.+...+..|...|.+
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 4567788999999999999999887643 2246688888899999999999999999998875 5566778888899999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
.|++++|.+.|++..+ .+...|+.+...|.+.|+.++|++.|++..+. .|+.. ....+...+...|..+++.
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV---TFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHhcCCcHHHHH
Confidence 9999999999988753 34667888999999999999999999988764 44432 2223455667778888777
Q ss_pred HHHHHHHH
Q 007075 157 EAHRDWGK 164 (619)
Q Consensus 157 ~~~~~~~~ 164 (619)
+.++...+
T Consensus 447 ~~f~~m~~ 454 (697)
T PLN03081 447 EIFQSMSE 454 (697)
T ss_pred HHHHHHHH
Confidence 77766543
No 272
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=6.9e-05 Score=78.43 Aligned_cols=240 Identities=17% Similarity=0.174 Sum_probs=140.5
Q ss_pred HHHHHHHhHhCCccEEEeCCCCCCCCcchhhccCC--cceeEecccC-CCCC---CCCCccEEEecCCCCCCCccCCCcc
Q 007075 253 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIGY-PNTT---GLPTIDYRITDSLADPPETKQKHVE 326 (619)
Q Consensus 253 ~~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~--Apvq~~~~G~-p~tt---g~~~~Dy~i~d~~~~p~~~~~~~~E 326 (619)
..++.+.|++.++|++|-..|+-. -..++|.+. -|+-+.--.+ |+.+ ..+..+++.+.- |........+
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs--~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f---~~~~~~~~~~ 154 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVS--GPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAF---PKLEAGVKPE 154 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccc--cHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeecc---ccccccCCCC
Confidence 457889999999999999988875 333443322 3444332221 2111 112334443321 1111122222
Q ss_pred ceEEcCCCccccCCCCCC-CCC-CCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHHHCC-CceEEEeccCCCCHH
Q 007075 327 ELIRLPECFLCYTPSPEA-GPV-CPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVP-NSRLVVKCKPFCCDS 400 (619)
Q Consensus 327 ~l~~lp~~~~~~~p~~~~-~~~-~~~~~l~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~P-~a~l~l~g~~~~~~~ 400 (619)
+.+..-+ .+ .+.-.. +.. .+..+. .+.+++..++-. .+++..+-+ ++...+ +..++..++. .
T Consensus 155 ~~~~tG~-Pv--r~~~~~~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~----~~~~l~~~~~v~~~~G~----~ 222 (357)
T COG0707 155 NVVVTGI-PV--RPEFEELPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPE----ALAKLANRIQVIHQTGK----N 222 (357)
T ss_pred ceEEecC-cc--cHHhhccchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHH----HHHHhhhCeEEEEEcCc----c
Confidence 3322221 10 110000 000 011111 145555555533 233333333 333333 3555554332 2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCcc---ccchh
Q 007075 401 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVG 476 (619)
Q Consensus 401 ~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~---~~r~~ 476 (619)
..+++.....+.|+ +...|. .+++..+|+.+|+++ . +|++|+.|.+++|+|+|-.+-..- -....
T Consensus 223 ~~~~~~~~~~~~~~----~~v~~f---~~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 223 DLEELKSAYNELGV----VRVLPF---IDDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred hHHHHHHHHhhcCc----EEEeeH---HhhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 26677777777777 677777 457888999999999 5 899999999999999997664332 23346
Q ss_pred HHHHHhcCCCccccC---CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 477 VSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 477 ~~~l~~~gl~~~v~~---~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
|..+...|....+.+ +.+.+++...++.++++.+++|+++.+..
T Consensus 292 A~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 292 AKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 788888888766643 47899999999999999999999988864
No 273
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.22 E-value=0.00015 Score=74.07 Aligned_cols=158 Identities=16% Similarity=0.089 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------------------- 62 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-------------------- 62 (619)
..+..+...|++..|..-..++++..|.++.+......+|.+.|++.+...+..+.-+-.
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 356677888888889888888888899998888888888988888888777666554321
Q ss_pred ----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Q 007075 63 ----------------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------------------------- 94 (619)
Q Consensus 63 ----------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-------------------------- 94 (619)
.+++.....++.-+...|++++|.+..+++++
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 12233444556667778888888776665554
Q ss_pred -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 95 -----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 95 -----~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
..|+++..+..||..|.+.+.+.+|..+++.+++..|+... ...++..+...|+..++.+..++..
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~---~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD---YAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh---HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 35778889999999999999999999999999999887533 2347888999999888777766543
No 274
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=6.2e-05 Score=80.16 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=100.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 7 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 86 (619)
Q Consensus 7 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 86 (619)
.+...++|++|.....+.+...|++..+....-.++.+.++|++|+...++-....-.+. ..+..+.|.+++++.++|+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHH
Confidence 445678999999999999999999999999999999999999999855443332222222 2267899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 87 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 87 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
.+++ -.++.+.......|.+++++|+|++|...|+..++.+-++
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 9998 5566667788889999999999999999999997765544
No 275
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.15 E-value=1.2e-05 Score=67.08 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=67.4
Q ss_pred EeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 007075 440 ISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLR 518 (619)
Q Consensus 440 v~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r 518 (619)
|+|.+... +.+..++|+|++|+|||+..-. +..-+-.-|...+..+|++++++++..|.+||+.+++++++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~------~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSP------GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChH------HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 35666655 4466999999999999985431 1111212244556668999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHH
Q 007075 519 DLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 519 ~~~~~~~~~~~~~~~~~le 537 (619)
+.+... ++++..++++.
T Consensus 75 ~~v~~~--~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKR--HTWEHRAEQIL 91 (92)
T ss_pred HHHHHh--CCHHHHHHHHH
Confidence 987654 78888877763
No 276
>PLN03077 Protein ECB2; Provisional
Probab=98.14 E-value=6.8e-05 Score=88.77 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=65.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCC
Q 007075 6 VAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~ 81 (619)
..|.+.|+.++|++.|++..+. .|+ ...+..+-..+...|+.++|.++|+...+..+ -+...+..+..++.+.|+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 3344444444444444443332 122 22233333334444444444444444442211 112334444444444455
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+++|.+.+++. ...|+ ...|..|-..+...|+.+.+....+++++++|++...+. +++..|...|+.+++.+..+.
T Consensus 641 ~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 641 LTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHCCChHHHHHHHHH
Confidence 55554444442 12232 333444444444445555555555555555555444322 245556666666555544443
No 277
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=6e-05 Score=80.24 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------------------- 62 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~------------------- 62 (619)
|..+.++++.++.++|+..++ ..++.+..+....|.+++++++|++|...|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 456777788888888888777 3456666677777888888888888888888775532
Q ss_pred -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCC
Q 007075 63 -----------PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--------PT-------YAEAYNNLGVLYRDAGS 115 (619)
Q Consensus 63 -----------p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~-------~~~a~~~Lg~~~~~~g~ 115 (619)
|+ ..+.++|.+-++...|+|.+|++.+++++++. -+ -..+...|+.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 33456777777777888888888777774431 11 01245667777777888
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 007075 116 ISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 116 ~~eA~~~~~~al~~~P~~~ 134 (619)
.++|...|...++.+|-+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADE 258 (652)
T ss_pred hHHHHHHHHHHHHhcCCCc
Confidence 8888887777777776654
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.10 E-value=0.00044 Score=65.77 Aligned_cols=158 Identities=28% Similarity=0.397 Sum_probs=129.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV-VYTV 78 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~-~~~~ 78 (619)
...+..+...+++..+...+...+. ..+.....+..++..+...+++.++++.+.+++...+.........+. ++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 3456778889999999999999987 688888999999999999999999999999999988887666666666 8999
Q ss_pred cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhcCCcHH
Q 007075 79 QGKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD-SRNAGQNRLLAMNYINEGHDDK 154 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p---~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~a~~~~~la~~~~~~g~~~~ 154 (619)
.|++++|...+++++...| ........++..+...+++++|+..+.+++...+. ....... ++..+...+..++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 220 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN--LGLLYLKLGKYEE 220 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH--hhHHHHHcccHHH
Confidence 9999999999999988777 45667777777788999999999999999999988 4555554 5566666665665
Q ss_pred HHHHHHH
Q 007075 155 LFEAHRD 161 (619)
Q Consensus 155 a~~~~~~ 161 (619)
+......
T Consensus 221 a~~~~~~ 227 (291)
T COG0457 221 ALEYYEK 227 (291)
T ss_pred HHHHHHH
Confidence 5554443
No 279
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.3e-06 Score=77.87 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=58.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 85 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 85 (619)
+.++...+|..|+.+|-+++.++|..+..+.|.+.|+++.++++.+..-.++|++++|+....++.+|.++.....|++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 34444455666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh
Q 007075 86 AEMIEKAIAA 95 (619)
Q Consensus 86 ~~~~~~al~~ 95 (619)
+..+.++..+
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666444
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.09 E-value=0.00014 Score=86.68 Aligned_cols=162 Identities=17% Similarity=0.034 Sum_probs=125.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNN 71 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~ 71 (619)
.+|.++...|++++|..+++++++..+.. ..+...+|.++...|++++|...+++++...... ..++.+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 35677889999999999999999854432 2456789999999999999999999999764321 235678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 007075 72 LGVVYTVQGKMDAAAEMIEKAIAANPT--------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD---SRNAGQNR 140 (619)
Q Consensus 72 lg~~~~~~g~~~eA~~~~~~al~~~p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~a~~~~ 140 (619)
+|.++...|++++|...++++++.... ....+..+|.++...|++++|...+++++.+... ........
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999999886321 2334667899999999999999999999886332 12233333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 141 LLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 141 ~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
.++..+...|+++++.+.+.+...
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999988887766544
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.09 E-value=6e-05 Score=75.74 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=125.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS------QSLN 70 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~ 70 (619)
.+++..+...-++.+++.+-+..+.+.... ..++..+|..+..++.++++++.|++|+.+.-++. +...
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 567777777888888888887777764332 35677788999999999999999999998754433 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH--HH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANPT----Y------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSR--NA 136 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p~----~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~--P~~~--~a 136 (619)
.||..+....++++|+-+..+|.++-.+ + ..+++.++..+..+|+...|.++.+++.++. -.+. .+
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999887432 1 3467788999999999999999999997763 2332 24
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 137 GQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 137 ~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
..-+.++.+|-..|+.+.++..+++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4445678889899998888877766543
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=4e-05 Score=71.92 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=117.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
|..|+.|-..|-+.-|.-.|.+++.+.|+.+++++.||.-+...|+++.|.+.|...++++|.+..++.|.|..++.-|+
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 56788888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE-QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~-~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
++-|...+.+-.+.+|++|---..|=.. ...-+..+|...+. ++...+.+... .+ +...|+..-..+.+++...
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG--~~--iV~~yLgkiS~e~l~~~~~ 223 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWG--WN--IVEFYLGKISEETLMERLK 223 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhh--HH--HHHHHHhhccHHHHHHHHH
Confidence 9999999999999999997432222222 22335556655444 44433322211 11 3444444444455555544
Q ss_pred HH
Q 007075 161 DW 162 (619)
Q Consensus 161 ~~ 162 (619)
..
T Consensus 224 a~ 225 (297)
T COG4785 224 AD 225 (297)
T ss_pred hh
Confidence 33
No 283
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=9.1e-05 Score=71.49 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----K--PNFSQSLNNLGV 74 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l----~--p~~~~~~~~lg~ 74 (619)
|-+..++...|+|.-.+..+.+.++.+ |..+.....||.+.++.|+.+.|..++++.-+. + ......+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 456778888999999999999999988 677888899999999999999999999965543 2 223346778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 134 (619)
++.-++++.+|...+.+++..+|.++.+.++.+.|+..+|+..+|++.++.+++..|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 899999999999999999999999999999999999999999999999999999999753
No 284
>PLN03077 Protein ECB2; Provisional
Probab=98.02 E-value=0.00021 Score=84.74 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=85.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHH------------
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSL------------ 69 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~------------ 69 (619)
.|-..|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++.++. .|+.....
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 455667777777777777776432 34456666777777777777777777766543 23322111
Q ss_pred ----------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 70 ----------------------NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 70 ----------------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
..|-..|.+.|++++|...|++. +.+...|+.+...|...|+.++|++.|++..
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12225566666666666666654 3445566666666666666666666666665
Q ss_pred Hh--CCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 128 KI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 128 ~~--~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
+. .|+... ++ .+...+.+.|..+++.+.++..
T Consensus 582 ~~g~~Pd~~T--~~-~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 582 ESGVNPDEVT--FI-SLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HcCCCCCccc--HH-HHHHHHhhcChHHHHHHHHHHH
Confidence 53 344322 11 1223345555555555554443
No 285
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.4e-05 Score=75.99 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 116 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~ 116 (619)
.-|..++...+|..|+.+|-+|+.++|..+..+.|.+.++++.++++......++++++.|+...+++.+|.++.....+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 44566777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007075 117 SLAIDAYEQCLKI 129 (619)
Q Consensus 117 ~eA~~~~~~al~~ 129 (619)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999654
No 286
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.00 E-value=0.00048 Score=73.83 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=113.1
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 353 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 353 l~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
..+..++|-+++...-. .++++...+.+...+...++-.|.. . . ...++. +.+...+++| +.
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~-----~------~~~~~p-~n~~v~~~~p----~~ 295 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-R-----D------TLVNVP-DNVIVADYVP----QL 295 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-c-----c------ccccCC-CceEEecCCC----HH
Confidence 45577888888877522 7788888888877766655555431 1 0 122444 8888888876 35
Q ss_pred HhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc---CCHHHHHHHHHHhhcCHHH
Q 007075 433 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 509 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~L~~d~~~ 509 (619)
.++..+|+++ ..||.+|+.|||..|||+|.++.. +-.-.-+.-+...|.+..+. .+++...+...+++.|+..
T Consensus 296 ~~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 296 ELLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred HHhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 5677799998 347778999999999999988875 22223566777788886665 6788888888999999888
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 510 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 510 ~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
++..++..+. +... -..+..++.+|+..++
T Consensus 372 ~~~~~~~~~~-~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAERLAEE-FKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHHHH-hhhc--ccHHHHHHHHHHHHhc
Confidence 7765444433 3222 2355677777776553
No 287
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00041 Score=67.40 Aligned_cols=143 Identities=19% Similarity=0.160 Sum_probs=115.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cC
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QG 80 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g 80 (619)
|.+++..+++++|+....+ -.+.++...--.++.+..+.+-|.+..++..+++.+ ..+..||..+.. .+
T Consensus 115 a~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccch
Confidence 5788889999999887765 334566667778888999999999999999988765 344555555543 45
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
++.+|.-+|++.-+..|..+...+.++.|+..+|++++|...++.++..++++++...|+..+. ...|.+.+..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a--~~~Gkd~~~~ 261 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA--LHLGKDAEVT 261 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH--HHhCCChHHH
Confidence 6999999999999988888999999999999999999999999999999999999999954433 4456665433
No 288
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.00025 Score=76.74 Aligned_cols=177 Identities=15% Similarity=0.005 Sum_probs=117.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
...++|+.++|+ +|.-+-++++.-.+++.. .++++.|.| +..+.+.+.....++. +++.+.-... ..-..
T Consensus 292 ~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~~---~~~~~~i~~~-~~la~ 363 (487)
T COG0297 292 LPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRHP---GRVLVVIGYD-EPLAH 363 (487)
T ss_pred CCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhcC---ceEEEEeeec-HHHHH
Confidence 355789999999 799999999999999877 899999987 6677788888777763 4444443332 34456
Q ss_pred HhcccCcEeecCCCC-CCchhHHHhhhcCCcEEecc-C---CccccchhHHHHHhcCCCccc--cCCHHHHH---HHHHH
Q 007075 433 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-G---SVHAHNVGVSLLTKVGLKHLI--AKNEDEYV---QLALQ 502 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~-g---~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~---~~a~~ 502 (619)
..|..+|++|=|+.+ +.|.|-++||..|++.|..+ | ++..++--.. ..-+-.+++ ..+.+++. .+|..
T Consensus 364 ~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f~~~~~~~l~~al~rA~~ 441 (487)
T COG0297 364 LIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLFLQTNPDHLANALRRALV 441 (487)
T ss_pred HHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEEEEecCCHHHHHHHHHHHHH
Confidence 688999999999998 77999999999998655433 3 1111110000 000011111 23455443 34555
Q ss_pred hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 503 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 503 L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
+..+++.. ++.-.+..|. ..|+++.-+.++.+.|+.+..
T Consensus 442 ~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 442 LYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 66666542 2333333343 469999999999999999864
No 289
>PLN02670 transferase, transferring glycosyl groups
Probab=97.94 E-value=0.00031 Score=76.36 Aligned_cols=175 Identities=11% Similarity=0.017 Sum_probs=107.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCC-H----HHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~-~----~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
+..|+|.|||+...++++.++..+.-|.+.|..-||.+..+... . .+-+.+.++.+.. -+++.+++| +.
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~r-----G~vv~~W~P-Q~ 350 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGR-----GMIHVGWVP-QV 350 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCC-----CeEEeCcCC-HH
Confidence 35689999999999999999999999999999999987642111 0 1112333332222 266778987 45
Q ss_pred HHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc-------CCHHHHHHHHHH
Q 007075 430 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLALQ 502 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~-------~~~~~y~~~a~~ 502 (619)
+.+.- ..+..|| ..+|.+|++||+++|||+|+++--. -....+..+...|..--+. -+.++..+.+.+
T Consensus 351 ~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~ 425 (472)
T PLN02670 351 KILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLN-EQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRL 425 (472)
T ss_pred HHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcchh-ccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHH
Confidence 54432 3344466 2477789999999999999987310 0123344555556553332 256777777777
Q ss_pred hhcCHHHHHHHHHHHH---HHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 503 LASDVTALANLRMSLR---DLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 503 L~~d~~~~~~lr~~~r---~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
+..|++ -..+|++++ +.+... -....+++.+++.+.+.
T Consensus 426 vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 426 AMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 776642 123333333 222222 34666677766665543
No 290
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=7.1e-05 Score=73.37 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------h----------
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS----------I---------- 61 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~----------l---------- 61 (619)
..||.+|+...+|..|.++|++.-.+.|......+..+..++..+.+..|+........ +
T Consensus 48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccccc
Confidence 45899999999999999999999999999888888888888888888877765443322 1
Q ss_pred ----------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 62 ----------KP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 62 ----------~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
-| +.+....+.|-+.++.|++++|++-|+.|++..--.+-.-++++.+++..|+++.|+++..+.++.
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 13 456678899999999999999999999999999999999999999999999999999988877653
No 291
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00038 Score=66.66 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQ----------SLNNLGVVYTVQGKMDAAAEMIEKAI 93 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~~~~----------~~~~lg~~~~~~g~~~eA~~~~~~al 93 (619)
..++..-|+-++..|+|.+|...|+.|+.. .|..++ .+.|++.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999753 455544 67899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 94 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 94 ~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
..+|.+..+++..|.+....=+.++|...+.++++++|.-..+...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999999999999999999999999987665544
No 292
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.90 E-value=0.0005 Score=75.16 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCccCcHH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 430 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~----~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~ 430 (619)
++.|||.|||+...+.++.++..+.-|++.+.-.||.++.+...+ .+-..+.++.. ...+++.+++| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 456899999999999999999999999999998899886432111 11122322221 24577789987 444
Q ss_pred HHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 431 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 431 ~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
++. ...+++|+ ..+|.+|++||+++|||+|+++-
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 443 24477777 34778899999999999998774
No 293
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.87 E-value=0.00051 Score=74.83 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCC---------------H----HHHHHHHHHHHHcCCC
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---------------D----SVRHRFLSTLEQLGLE 415 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~---------------~----~~~~~l~~~~~~~Gi~ 415 (619)
.+.|+|.|||+...++.+.++..+.-|++.|.-.||.+..+... + .+-+.+.++. .
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~-----~ 336 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRT-----H 336 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHh-----c
Confidence 45689999999999999999999999999999999998422100 0 0112233322 2
Q ss_pred CCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccc-hhHHHH-HhcCCCcccc---
Q 007075 416 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN-VGVSLL-TKVGLKHLIA--- 490 (619)
Q Consensus 416 ~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r-~~~~~l-~~~gl~~~v~--- 490 (619)
...+++.+++| +.+.+.- ..+..|| ..+|.+|++||+++|||+|+++-- ... ..+..+ ...|+.-.+.
T Consensus 337 ~rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~--~DQ~~na~~~~~~~g~gv~~~~~~ 409 (481)
T PLN02992 337 DRGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLF--AEQNMNAALLSDELGIAVRSDDPK 409 (481)
T ss_pred CCCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCcc--chhHHHHHHHHHHhCeeEEecCCC
Confidence 13478889987 4554432 2222355 347778999999999999998741 111 223444 3556543332
Q ss_pred --CCHHHHHHHHHHhhcCH
Q 007075 491 --KNEDEYVQLALQLASDV 507 (619)
Q Consensus 491 --~~~~~y~~~a~~L~~d~ 507 (619)
-+.++..+...++..++
T Consensus 410 ~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 410 EVISRSKIEALVRKVMVEE 428 (481)
T ss_pred CcccHHHHHHHHHHHhcCC
Confidence 25667777777777663
No 294
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.86 E-value=0.00082 Score=78.03 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcC
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQG 80 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g 80 (619)
.|.-+|....++++|.++|+..++...+....|..+|..++.+.+-++|...+++|++.-|. +.+.....+.+.++.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 45667888888999999999988888888889999999999988889999999999998887 7778888888889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
+.+.+...|+..+..+|...+.|+.+...-.+.|+.+.+...|++++.+.=.-..+...+-.-+.|...--+++..++.+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999999999999999999999888889999999999999998775433333333324444444322333344333
No 295
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.85 E-value=0.00045 Score=70.70 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=103.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
++.-+...|+.++|.+..+++++..-+.. .+..++ ...-++...=++..++.++..|+++..+..||..+++.+.|.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 45667889999999999999998654332 222222 235678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
+|..+++.+++..|+ ...+..+|.++.++|+.++|.+.+++++.+
T Consensus 346 kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 346 KASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999887 667899999999999999999999999854
No 296
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.84 E-value=0.00087 Score=73.99 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=106.8
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 357 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 357 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
.++|.+||+.. +..++.++...+.+++.|.-.+|-.+... .. .++ +++|.+.+++| +.+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 47788888874 46788999999999999975445433221 00 234 48999999998 55544
Q ss_pred hcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc---CCHHHHHHHHHHhhcCHHHH
Q 007075 434 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~L~~d~~~~ 510 (619)
....+++|+ ..+|..|+.||+++|||+|.++--. -....+..+...|....+. -+.++..++..++.+|+..+
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMG-DQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCc-cHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 235688888 3477789999999999999877521 1112344555667654332 36788888888999998877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 007075 511 ANLRMSLRDLMSKSPVCDGQNFALGLEST 539 (619)
Q Consensus 511 ~~lr~~~r~~~~~~~~~~~~~~~~~le~~ 539 (619)
+..++- ++.+...+.-..++.+..+|.+
T Consensus 437 ~~a~~l-s~~~~~~p~~~~~~av~~iE~v 464 (507)
T PHA03392 437 KNLKEL-RHLIRHQPMTPLHKAIWYTEHV 464 (507)
T ss_pred HHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 664443 3334444433345556655554
No 297
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.84 E-value=0.00066 Score=72.92 Aligned_cols=140 Identities=9% Similarity=0.022 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 355 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 355 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
+..++|.++|+.. +....+++...+.+...+.-.++..|..... . ..+ +++|.+.++++ . ..
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~---~~ 300 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-H---DW 300 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-H---HH
Confidence 4567788888874 3445677777777777755555555543111 0 223 48899999975 3 34
Q ss_pred hcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC---CHHHHHHHHHHhhcCHHHH
Q 007075 434 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~L~~d~~~~ 510 (619)
++..||+++ ..+|.+|+.|||++|+|+|.++-..- ....+..+...|..-.+.. +.++..+...++.+++ .+
T Consensus 301 ll~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 301 LLPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred Hhhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 566699999 45777999999999999998764311 2234556667776644433 6777777777877754 44
Q ss_pred HHHHHH
Q 007075 511 ANLRMS 516 (619)
Q Consensus 511 ~~lr~~ 516 (619)
++.++.
T Consensus 376 ~~~~~~ 381 (401)
T cd03784 376 RRAAAL 381 (401)
T ss_pred HHHHHH
Confidence 443333
No 298
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.83 E-value=0.00095 Score=79.65 Aligned_cols=162 Identities=12% Similarity=0.004 Sum_probs=122.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPH---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QS 68 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~ 68 (619)
..+..+...|++++|...+.++.+..+. .......++.++...|++++|..+++++++..+... .+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3566778899999999999988764221 234556788889999999999999999998654422 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----H-HH
Q 007075 69 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-----R-NA 136 (619)
Q Consensus 69 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-----~-~a 136 (619)
...+|.++...|++++|...+++++...... ..++.++|.++...|++++|...+++++.+.... . ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 6788999999999999999999998764421 3466788999999999999999999998863221 1 22
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 007075 137 GQNRLLAMNYINEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 137 ~~~~~la~~~~~~g~~~~a~~~~~~~~~ 164 (619)
.....++..+...|+.+++.+.+++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 2233466777788999888777665433
No 299
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.83 E-value=7.5e-05 Score=75.03 Aligned_cols=127 Identities=22% Similarity=0.326 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN----------FS 66 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~----------~~ 66 (619)
.+|+++..++.|+++++.|++|++..-++ ..++..||.++-++.++++|..+..+|.++.-. ..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 47889999999999999999999874332 347889999999999999999999999887321 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 67 QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 67 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|++|...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 467889999999999999999999998873 234566788999999999999999999999865
No 300
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.82 E-value=0.0007 Score=73.48 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC-CHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~-~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
.+.|+|.|||+..+++++.++-.+.-|+..+.--||++..+.. ++...+.+-+-+.+. +. +|....+++| +.+.+.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~~-~~g~v~~w~P-Q~~iL~ 339 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-IS-GRGYIVKWAP-QKEVLS 339 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-cc-CCeEEEccCC-HHHHhC
Confidence 4679999999999999999999999999999999998863311 111111122222222 33 6777779988 455443
Q ss_pred hcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhc-CCCccc--cCCHHHHHHHHHHhhcCH
Q 007075 434 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASDV 507 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~-gl~~~v--~~~~~~y~~~a~~L~~d~ 507 (619)
...+..|+ ..+|-+|++||+++|||+|+++--. -....+..+... |+.--+ .-+.++..+...++..|+
T Consensus 340 -h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 340 -HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred -CCccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence 24455566 2477789999999999999987421 012233333322 333111 135667777777777665
No 301
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.80 E-value=4.8e-05 Score=53.83 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 69 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 69 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
+..+|.+|..+|++++|++.|+++++.+|+++.++..||
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444443
No 302
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.80 E-value=0.00017 Score=75.48 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=87.7
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhccc
Q 007075 358 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 437 (619)
Q Consensus 358 ~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~ 437 (619)
.+++-.|++.|.. .+ ....|+.+|+++|.|.. +. ... ++|+|.|+++ .++....|..
T Consensus 170 ~~i~yaG~l~k~~--~l------~~~~~~~~l~i~G~g~~----~~---------~~~-~~V~f~G~~~-~eel~~~l~~ 226 (333)
T PRK09814 170 KKINFAGNLEKSP--FL------KNWSQGIKLTVFGPNPE----DL---------ENS-ANISYKGWFD-PEELPNELSK 226 (333)
T ss_pred ceEEEecChhhch--HH------HhcCCCCeEEEECCCcc----cc---------ccC-CCeEEecCCC-HHHHHHHHhc
Confidence 3566678887642 11 11358899999997721 11 233 7899999998 5788877776
Q ss_pred CcEeecCC------------CCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhc
Q 007075 438 MDISLDTF------------PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 505 (619)
Q Consensus 438 ~Dv~Ldt~------------~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~ 505 (619)
|+.|-+. .++...-+.++|++|+|||+..... .+.++.. +-.++++++.++..+.+..+
T Consensus 227 -~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~-----~~~~V~~-~~~G~~v~~~~el~~~l~~~-- 297 (333)
T PRK09814 227 -GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAA-----IADFIVE-NGLGFVVDSLEELPEIIDNI-- 297 (333)
T ss_pred -CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCcc-----HHHHHHh-CCceEEeCCHHHHHHHHHhc--
Confidence 5443221 3456667899999999999865431 2334444 44456667888888888775
Q ss_pred CHHHHHHHHHHHHHH
Q 007075 506 DVTALANLRMSLRDL 520 (619)
Q Consensus 506 d~~~~~~lr~~~r~~ 520 (619)
+++.+++|+++.+..
T Consensus 298 ~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 298 TEEEYQEMVENVKKI 312 (333)
T ss_pred CHHHHHHHHHHHHHH
Confidence 457788888888764
No 303
>PLN02764 glycosyltransferase family protein
Probab=97.80 E-value=0.00054 Score=74.00 Aligned_cols=183 Identities=8% Similarity=-0.013 Sum_probs=104.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 354 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~----~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
+.+.|+|.|||+...++++-+.-.+.-|+..-.--+|++..+...+ .+-+.++++.+.. -+++.+++| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~gr-----G~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGR-----GVVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccC-----CcEEeCCCC-HH
Confidence 4677999999999888877666666566666666778775332111 1122333332222 256778887 45
Q ss_pred HHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHH-HhcCCCccc------cCCHHHHHHHHHH
Q 007075 430 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQ 502 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l-~~~gl~~~v------~~~~~~y~~~a~~ 502 (619)
+.+. ...++.|| ..+|.+|++||+++|||+|+++--. -....+..+ ..+|+.--+ .-+.++..+.+.+
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~ 403 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLG-DQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCccc-chHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHH
Confidence 5443 34566677 3477889999999999999987521 112233444 334443111 1266777777777
Q ss_pred hhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 007075 503 LASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 550 (619)
Q Consensus 503 L~~d~-~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~~~~~g 550 (619)
+..+. +..+++|++.++..... -+....-+.++++.+. |++++.+
T Consensus 404 vm~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 404 VMKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred HhcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 77765 45566666665532221 1112223455555544 3555544
No 304
>PLN03004 UDP-glycosyltransferase
Probab=97.79 E-value=0.00051 Score=74.36 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=92.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCccCcHH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 430 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~----~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~ 430 (619)
++.|+|.|||+...+.++.++..+.-|...+.-.||.+..+...+ .....+-+-|.+. +....+++.+++| +.+
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~P-Q~~ 346 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAP-QVP 346 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCC-HHH
Confidence 456899999999999999999999999999999999886431100 0111111122222 2224577788887 444
Q ss_pred HHHhcccCcE--eecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHH-hcCCCcccc------CCHHHHHHHHH
Q 007075 431 HMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQLAL 501 (619)
Q Consensus 431 ~~~~~~~~Dv--~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~-~~gl~~~v~------~~~~~y~~~a~ 501 (619)
.+...++ || ..+|.++++||+++|||+|+++--. -....+..+. ..|..--+. -+.++..+.+.
T Consensus 347 ---iL~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~-DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~ 419 (451)
T PLN03004 347 ---VLNHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYA-EQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQ 419 (451)
T ss_pred ---HhCCCccceEe---ccCcchHHHHHHHcCCCEEeccccc-cchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHH
Confidence 4445665 66 2477789999999999999987411 1112333443 345542231 25667777777
Q ss_pred HhhcCHHHH
Q 007075 502 QLASDVTAL 510 (619)
Q Consensus 502 ~L~~d~~~~ 510 (619)
++..|+..+
T Consensus 420 ~vm~~~~~r 428 (451)
T PLN03004 420 EIIGECPVR 428 (451)
T ss_pred HHhcCHHHH
Confidence 777675433
No 305
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=5e-05 Score=53.75 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 74 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 74 (619)
.++..+|..|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888887775
No 306
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0011 Score=65.69 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=105.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCC
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG--VVYTVQGK 81 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg--~~~~~~g~ 81 (619)
-+......|++.+|...|..++...|++.++...++.+|...|+.++|...+...=....+. ......+ ..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhc
Confidence 34567788999999999999999999999999999999999999999988776532221111 1111111 22222222
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 156 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~ 156 (619)
..+ +..+++.+..+|++.++-+.++..+...|+.++|.+.+-..++.+-...+-....-+...+...|..+.+.
T Consensus 219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 222 23456677889999999999999999999999999999999988765544333333445555555444433
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.76 E-value=2.8e-05 Score=51.58 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 89 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 120 (619)
Q Consensus 89 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 120 (619)
|+++++++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555566666666666666666666655554
No 308
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.74 E-value=4.8e-05 Score=79.64 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 116 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~ 116 (619)
+-+.-.+.-++++.|+..|.+|++++|+++..+.+.+.++.+.+++..|+.-+.+|++.+|....+|+..|.++..++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44555667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Q 007075 117 SLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 117 ~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
.+|...|++...+.|+++.+...
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHH
Confidence 99999999999999998776543
No 309
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.74 E-value=0.00086 Score=73.53 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCH-----HHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD-----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~-----~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
.+.|+|.|||+.....++.++.++..|++.+.-.||.++.+.... .+-+.+.++ +. +|..+.+++| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er-----~~-~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDR-----VM-GRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHH-----hc-cCeeeeccCC-HH
Confidence 456899999999888888899999999999998888876431110 011222222 22 5666779987 44
Q ss_pred HHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHHhcCCCccc----------cCCHHHHH
Q 007075 430 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKVGLKHLI----------AKNEDEYV 497 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~~~gl~~~v----------~~~~~~y~ 497 (619)
+++ ....++.|| ..+|-+|++||+++|||+|+++- +.+.. +..++...|..--+ .-+.++..
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLN--AFTMVKELGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhh--HHHHHHHhCeeEEeecccccccCCcccHHHHH
Confidence 443 334456666 34777899999999999998774 32221 11224444443211 12556666
Q ss_pred HHHHHhhcC
Q 007075 498 QLALQLASD 506 (619)
Q Consensus 498 ~~a~~L~~d 506 (619)
+...++..+
T Consensus 426 ~av~~~m~~ 434 (475)
T PLN02167 426 GAVRSLMDG 434 (475)
T ss_pred HHHHHHhcC
Confidence 666676654
No 310
>PLN02562 UDP-glycosyltransferase
Probab=97.71 E-value=0.0016 Score=70.77 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=90.5
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 356 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 356 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
+.++|.|||+.. ...++.++..+..+++.+.-.||.+..+.. +.+.+.+.++ + ++|+.+.+++| +.+++.-
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 457899999974 788999999999999999988887754311 1111122222 2 37888889987 4554432
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHH-hcCCCccc-cCCHHHHHHHHHHhhcCHHHH
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 510 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~-~~gl~~~v-~~~~~~y~~~a~~L~~d~~~~ 510 (619)
..+-.|| ..+|-+|++||+++|||+|+++- +.+ ..+..+. ..|+.--+ .-+.++..+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~---~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQF---VNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchH---HHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3333565 34777899999999999998774 322 1223332 23432111 136677777777777787665
Q ss_pred HHH
Q 007075 511 ANL 513 (619)
Q Consensus 511 ~~l 513 (619)
++.
T Consensus 418 ~~a 420 (448)
T PLN02562 418 ERL 420 (448)
T ss_pred HHH
Confidence 543
No 311
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.71 E-value=0.00079 Score=70.96 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=120.1
Q ss_pred HHHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCC------CCCccEEEecCCCCCCCccCCCc-
Q 007075 253 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHV- 325 (619)
Q Consensus 253 ~~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg------~~~~Dy~i~d~~~~p~~~~~~~~- 325 (619)
..++.+.+++.++||+|-..|+.. ...+++.+...+.+.+.---...| .+..|.++++- | +....+.
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f---~-~~~~~~~~ 153 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTF---E-EAAKHLPK 153 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEc---c-chhhhCCC
Confidence 346778899999999998777764 344555555544443333222223 23456555432 2 2223333
Q ss_pred cceEEcCCCccccCCCCCCC---CCCCCCCCCCCCeEEEec-CCC--CcCCHHHHHHHHHHHHHCCCceEEEe-ccCCCC
Q 007075 326 EELIRLPECFLCYTPSPEAG---PVCPTPALTNGFITFGSF-NNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCC 398 (619)
Q Consensus 326 E~l~~lp~~~~~~~p~~~~~---~~~~~~~l~~~~~~f~~~-~~~--~K~~~~~~~~~~~il~~~P~a~l~l~-g~~~~~ 398 (619)
++++..-. . ..+..... ..+...+++++..++..+ |+. ..++..+.+++..+. .+.+++.. |..
T Consensus 154 ~k~~~tG~-P--vr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~--- 224 (352)
T PRK12446 154 EKVIYTGS-P--VREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG--- 224 (352)
T ss_pred CCeEEECC-c--CCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc---
Confidence 34332211 0 11110000 011122344443334333 333 222222333333332 23455544 422
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCc----ccc
Q 007075 399 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAH 473 (619)
Q Consensus 399 ~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~----~~~ 473 (619)
...+.+. .. +++...+++. ++...+|..||+++ . +|++|+.|++++|+|.|..+-.. ...
T Consensus 225 -~~~~~~~----~~----~~~~~~~f~~--~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q 289 (352)
T PRK12446 225 -NLDDSLQ----NK----EGYRQFEYVH--GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQ 289 (352)
T ss_pred -hHHHHHh----hc----CCcEEecchh--hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchH
Confidence 1222221 11 1233346531 35667889999998 5 78999999999999999775321 123
Q ss_pred chhHHHHHhcCCCccccC---CHHHHHHHHHHhhcCHHHHH
Q 007075 474 NVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 474 r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~L~~d~~~~~ 511 (619)
...+..+...|....+.. +.+...+...++..|++.++
T Consensus 290 ~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 290 ILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 345677777787655432 56888888889998986654
No 312
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.69 E-value=0.0011 Score=70.08 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=93.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------------------C
Q 007075 8 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----------------------N 64 (619)
Q Consensus 8 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p-----------------------~ 64 (619)
..+..+.++-++.-++|++++|+++.+|..||.- ......+|+++|+++++... .
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 3456788999999999999999999999988862 23446788888888876411 0
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 65 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 65 --~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
...+...+|.+..++|+.+||++.++..++..|. +..++.+|..++..++.|.++...+.+--
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0224567899999999999999999999988775 46688999999999999999988888753
No 313
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.68 E-value=4.2e-05 Score=50.75 Aligned_cols=31 Identities=39% Similarity=0.668 Sum_probs=15.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 007075 21 YELAFHFNPHCAEACNNLGVIYKDRDNLDKA 51 (619)
Q Consensus 21 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 51 (619)
|+++++++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 4445555555555555555555555555544
No 314
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.001 Score=66.45 Aligned_cols=156 Identities=12% Similarity=-0.065 Sum_probs=123.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcC
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNF---SQSLNNLGVVYTVQG 80 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~---~~~~~~lg~~~~~~g 80 (619)
+.++...|++.+|....++.++..|.+.-++.---.+++..|+...-...+++.+-. +++. ......++-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 345567789999999999999999999888877778888899999999999999877 7776 445566777888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHhhcCCcHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-R-NAGQNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-~-~a~~~~~la~~~~~~g~~~~a~~~ 158 (619)
-|++|.+..++++++++.+.-+...++.++...|++.++.++..+--..-... . ..+.+.-.++.++..++++.+.+.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999877653221111 1 111222246667777888888776
Q ss_pred HH
Q 007075 159 HR 160 (619)
Q Consensus 159 ~~ 160 (619)
+.
T Consensus 270 yD 271 (491)
T KOG2610|consen 270 YD 271 (491)
T ss_pred HH
Confidence 64
No 315
>PLN02210 UDP-glucosyl transferase
Probab=97.67 E-value=0.00091 Score=72.79 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
+..|+|.|||+..+..++.++..+.-|+..+.-.+|.++.....+ ....+.++.. .+|..+.+++| +.+.+.-
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~-~~~~~~~~~~-----~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQ-NVQVLQEMVK-----EGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcccc-chhhHHhhcc-----CCCeEEEecCC-HHHHhcC
Confidence 456899999999999999999999999999998888876432111 1122222211 25556678887 4444432
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHHh-cCCCcccc-------CCHHHHHHHHHHhh
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 504 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~L~ 504 (619)
..+..|| ..+|-+|++||+++|||+|+++- +.+ ..+..+.. .|..-.+. -+.++..+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 2234666 24677899999999999999874 322 23444443 45442221 25566666666666
Q ss_pred cCH
Q 007075 505 SDV 507 (619)
Q Consensus 505 ~d~ 507 (619)
.++
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 554
No 316
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00081 Score=68.46 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 87 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 87 (619)
.+.+..+.|...|++|++..+.....|...|.+-+. .++.+.|...|+++++..|.+...|......+...++.+.|..
T Consensus 12 ~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~ 91 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARA 91 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHH
Confidence 333345555555555554334444555555555444 2333335555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 88 MIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 88 ~~~~al~~~p~~~---~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.|++++..-|... ..|......-...|+.+...+.++++.+.-|+
T Consensus 92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555444332 34444444445555555555555555555444
No 317
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.66 E-value=6.5e-05 Score=78.64 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
+-+..++..+.|+.|+..|.+|++++|+++..+.+.+..+...+++..|+.-+.+|++++|....+++..|.+....+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLY 110 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~ 110 (619)
.+|...|++...+.|+.+.+...+-.|-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999998877766553
No 318
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.65 E-value=0.00042 Score=76.82 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCCcCCH-HHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 355 NGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
+..++|.|||+..+..| +.++..++.+++.|...+|-..+. . ... + ++.+.+..++| +.+.++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----~-~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----P-PEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS----H-GCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc----c-ccc---------c-cceEEEecccc-chhhhh
Confidence 45678999999865444 558999999999999777765431 0 011 1 26778889998 666664
Q ss_pred hcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccc-hhHHHHHhcCCCcccc---CCHHHHHHHHHHhhcCHHH
Q 007075 434 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN-VGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 509 (619)
Q Consensus 434 ~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r-~~~~~l~~~gl~~~v~---~~~~~y~~~a~~L~~d~~~ 509 (619)
...+++|+ ..+|.+++.||+++|||+|+++- +... ..+..+...|....+- -+.++..++..+++.|+..
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~--~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y 412 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPL--FGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSY 412 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GC--STTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCC--cccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHH
Confidence 45567777 24777899999999999999874 1222 2355666677754332 3678899999999999876
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 007075 510 LANLRMSLRDLMSKSPVCDGQNFALGLEST 539 (619)
Q Consensus 510 ~~~lr~~~r~~~~~~~~~~~~~~~~~le~~ 539 (619)
++..++ +++.+...|.--.++.+..+|-+
T Consensus 413 ~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 413 KENAKR-LSSLFRDRPISPLERAVWWIEYV 441 (500)
T ss_dssp HHHHHH-HHHTTT-----------------
T ss_pred HHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Confidence 655333 33334333332334444444433
No 319
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.64 E-value=0.0017 Score=66.18 Aligned_cols=188 Identities=14% Similarity=0.099 Sum_probs=99.3
Q ss_pred HHHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCCCCCccEEEecCCCCCCCccCCCcc-----c
Q 007075 253 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVE-----E 327 (619)
Q Consensus 253 ~~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~~~~~E-----~ 327 (619)
..++.+.|++.++|++|--...+....... .|..-..+..+.-....+. ..|++|-.... . . ...|.+ +
T Consensus 69 ~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~--~k~~~~~l~~iDD~~~~~~-~~D~vin~~~~-~-~-~~~y~~~~~~~~ 142 (279)
T TIGR03590 69 ALELINLLEEEKFDILIVDHYGLDADWEKL--IKEFGRKILVIDDLADRPH-DCDLLLDQNLG-A-D-ASDYQGLVPANC 142 (279)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCHHHHHH--HHHhCCeEEEEecCCCCCc-CCCEEEeCCCC-c-C-HhHhcccCcCCC
Confidence 347899999999999996554443222222 2222224444443322222 67888754321 1 1 111211 1
Q ss_pred eEEcCCCccccCCCCC---CCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCce-EEEeccCCCCHHH
Q 007075 328 LIRLPECFLCYTPSPE---AGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSV 401 (619)
Q Consensus 328 l~~lp~~~~~~~p~~~---~~~~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~-l~l~g~~~~~~~~ 401 (619)
.+.+ +. -|.|-.. ..... ....++..-++-++|-. .+++..+++++.++ .++.. .++.|.+. +.
T Consensus 143 ~~l~-G~--~Y~~lr~eF~~~~~~-~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~---~~~~~i~vv~G~~~---~~ 212 (279)
T TIGR03590 143 RLLL-GP--SYALLREEFYQLATA-NKRRKPLRRVLVSFGGADPDNLTLKLLSALAES---QINISITLVTGSSN---PN 212 (279)
T ss_pred eEEe-cc--hHHhhhHHHHHhhHh-hhcccccCeEEEEeCCcCCcCHHHHHHHHHhcc---ccCceEEEEECCCC---cC
Confidence 1111 11 1222100 00000 00001122345555533 45566777766543 23333 33556543 23
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEecc
Q 007075 402 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 467 (619)
Q Consensus 402 ~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~ 467 (619)
.+++++..+.. .++.+.+.+ .+...+|..||+++. .||+|+.|++++|+|+|..+
T Consensus 213 ~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 213 LDELKKFAKEY----PNIILFIDV---ENMAELMNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 45666665543 478888874 577888999999995 46799999999999999754
No 320
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00039 Score=66.55 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC----------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP 63 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p 63 (619)
..-|+-++..|+|.+|...|+.|+.. .|.. ...+.|+..|+...|+|-++++.....+...|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999864 3443 34688999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 64 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 102 (619)
Q Consensus 64 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a 102 (619)
++..+++..|.+....=+.++|...+.++++++|.-..+
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999986543
No 321
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.60 E-value=0.0028 Score=69.64 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=90.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC-----------C-HH-HHHHHHHHHHHcCCCCCcEEE
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C-DS-VRHRFLSTLEQLGLESLRVDL 421 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~-----------~-~~-~~~~l~~~~~~~Gi~~~rv~f 421 (619)
.+.|+|.|||+....+++.++..+..|++.+.-.||.+..+.. + .. +-+.+.++ +. +|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-----~~-~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-----TK-DIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-----hc-cCceE
Confidence 3568899999999999999999999999999988888753210 0 00 01122222 22 67777
Q ss_pred cCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhH-HHHHhcCCCcccc--------
Q 007075 422 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGV-SLLTKVGLKHLIA-------- 490 (619)
Q Consensus 422 ~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~-~~l~~~gl~~~v~-------- 490 (619)
.+++| +.++++ ...+..|| ..+|-+|++||+++|||+|+++- +.+ ..+ .++...|+.--+.
T Consensus 347 ~~W~P-Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~---~Na~~~v~~~g~Gv~l~~~~~~~~~ 418 (481)
T PLN02554 347 IGWAP-QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQK---FNAFEMVEELGLAVEIRKYWRGDLL 418 (481)
T ss_pred EeeCC-HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCccccch---hhHHHHHHHhCceEEeecccccccc
Confidence 89987 455442 24566666 34777899999999999999874 322 223 3345555532221
Q ss_pred ------CCHHHHHHHHHHhhc-CHHHHH
Q 007075 491 ------KNEDEYVQLALQLAS-DVTALA 511 (619)
Q Consensus 491 ------~~~~~y~~~a~~L~~-d~~~~~ 511 (619)
-+.++..+...++.. |++.++
T Consensus 419 ~~~~~~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 419 AGEMETVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred ccccCeEcHHHHHHHHHHHhcCCHHHHH
Confidence 155666666666664 554443
No 322
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.60 E-value=0.0014 Score=71.73 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=85.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
++.++|.|||+.....++.++..+..|+..+.-.+|.+... ...+.+. ..+++.+.+++| +.+++.-
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~h 339 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLCH 339 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhcc
Confidence 45688999999988889999999999999888777754321 1112111 126788889987 4555442
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHh-cCCCcccc--------CCHHHHHHHHHHhhc
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA--------KNEDEYVQLALQLAS 505 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~-~gl~~~v~--------~~~~~y~~~a~~L~~ 505 (619)
..+..|| ..+|.+|++||+++|||+|+++--. -....+..+.. +|..--+. -+.++..+.+.++..
T Consensus 340 -~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 340 -SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFW-DQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred -CccceEE---ecCchhHHHHHHHcCCCEEeccccc-cchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 3333466 3477789999999999999887421 01122333332 23322221 256777777777776
Q ss_pred CH
Q 007075 506 DV 507 (619)
Q Consensus 506 d~ 507 (619)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 64
No 323
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.0016 Score=72.79 Aligned_cols=128 Identities=20% Similarity=0.110 Sum_probs=110.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 88 (619)
...++|.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+.-+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45678999999999999999999999999999999999999999999888888888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007075 89 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 137 (619)
Q Consensus 89 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~ 137 (619)
|+++++.+|+ .+..+.+=.+|.+.+.|.+-.+.--+.-+..|.++-..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyf 147 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYF 147 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 9999999999 77777777888888877765555555555677765433
No 324
>PLN02207 UDP-glycosyltransferase
Probab=97.58 E-value=0.0031 Score=68.65 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 354 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~--~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
+++.|+|.|||+..++..+.++..+.-|...+.-.||.+..+.. .+.+-+.+.++ +. +|..+.++.| +.+.
T Consensus 273 ~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~~-~~g~i~~W~P-Q~~I 345 (468)
T PLN02207 273 PEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----VS-GRGMICGWSP-QVEI 345 (468)
T ss_pred CCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----cC-CCeEEEEeCC-HHHH
Confidence 34568999999999999999999999999999999998864211 10011222222 22 6777779987 5555
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
++- ..+..|| ..+|-++++||+++|||+|+++-
T Consensus 346 L~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 346 LAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred hcc-cccceee---ecCccccHHHHHHcCCCEEecCc
Confidence 533 4455566 24777899999999999999874
No 325
>PLN00414 glycosyltransferase family protein
Probab=97.57 E-value=0.0026 Score=68.98 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=90.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCccCcH
Q 007075 354 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 429 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~----~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~ 429 (619)
+++.|+|.|||+...++++-+.-.+.=|+..-.--||++..+.+ .+.+-+.++++....| +++.+++| +.
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q~ 323 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-QP 323 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-HH
Confidence 46779999999998887544443343344444445677754211 1122334444443222 46678887 44
Q ss_pred HHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHH-HhcCCCcccc------CCHHHHHHHHHH
Q 007075 430 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLALQ 502 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l-~~~gl~~~v~------~~~~~y~~~a~~ 502 (619)
+.+. ...++.|| ..+|.+|++||+++|||+|+++--. -....+.++ ...|..--+. -+.++..+.+.+
T Consensus 324 ~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 324 LILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLA-DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred HHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCccc-chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHH
Confidence 4442 24446676 3477889999999999999987421 112334444 3455542221 366777777777
Q ss_pred hhcCH-HHHHHHHHHHHH
Q 007075 503 LASDV-TALANLRMSLRD 519 (619)
Q Consensus 503 L~~d~-~~~~~lr~~~r~ 519 (619)
+..|+ +..+++|++.++
T Consensus 399 ~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HhcCChhhHHHHHHHHHH
Confidence 77664 445555555554
No 326
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.56 E-value=0.0033 Score=61.33 Aligned_cols=132 Identities=23% Similarity=0.298 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 007075 31 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE---AYN 104 (619)
Q Consensus 31 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---a~~ 104 (619)
.+.-+++-|....+.|++++|++.|+.+.+..|..+ ++...++.++++.+++++|+...++-+++.|++++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 467889999999999999999999999999887654 68899999999999999999999999999998764 566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhhcCCcHHHHHHHHH
Q 007075 105 NLGVLYRDA--------GSISLAIDAYEQCLKIDPDSRNA---------------GQNRLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 105 ~Lg~~~~~~--------g~~~eA~~~~~~al~~~P~~~~a---------------~~~~~la~~~~~~g~~~~a~~~~~~ 161 (619)
..|.++... .-..+|+..+++.++.-|+..-+ ...+..+.-|.+.|.+..+....+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 677776532 33468889999999999987422 1222344556666665554444443
Q ss_pred H
Q 007075 162 W 162 (619)
Q Consensus 162 ~ 162 (619)
.
T Consensus 193 v 193 (254)
T COG4105 193 V 193 (254)
T ss_pred H
Confidence 3
No 327
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=97.56 E-value=0.0022 Score=71.89 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHH--HC--CCceEEEeccCCCCH----HHHHHHHHHHHHcCCCCCcEEEc
Q 007075 353 LTNGFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLL 422 (619)
Q Consensus 353 l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--P~a~l~l~g~~~~~~----~~~~~l~~~~~~~Gi~~~rv~f~ 422 (619)
+..+.+++|...|+ +|...-++....++++ .. .+.++++.|++...+ .+...+....+.-.+ ++||.|+
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~ 463 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFL 463 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEE
Confidence 34567889999999 7998888888777764 32 358899988774332 244444444443334 3799998
Q ss_pred CCccCcHHHHHhcccCcEeec-CCC-C-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcccc---------
Q 007075 423 PLILLNHDHMQAYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--------- 490 (619)
Q Consensus 423 g~~~~~~~~~~~~~~~Dv~Ld-t~~-~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~--------- 490 (619)
..-. ..--..++..+||+|. |+. + ..||+-+=||..|.+.+|....-+..-.. |-++|.-
T Consensus 464 ~~Yd-~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 464 ENYD-INLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred cCCC-HHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCcccccc
Confidence 7643 2222346799999999 775 7 78999999999999999754311111000 1122221
Q ss_pred -----CCHHHHHHHH---H-HhhcC-HHH--HHHHHHHHHHHhh-cCCCCChHHHHHHHHHHH
Q 007075 491 -----KNEDEYVQLA---L-QLASD-VTA--LANLRMSLRDLMS-KSPVCDGQNFALGLESTY 540 (619)
Q Consensus 491 -----~~~~~y~~~a---~-~L~~d-~~~--~~~lr~~~r~~~~-~~~~~~~~~~~~~le~~y 540 (619)
.|.+++.++. + .+..+ ++. -..+.+.++..|. ..+.|++.++++++.+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 3455554443 3 33323 211 1223333333333 245799999999998877
No 328
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.54 E-value=0.0035 Score=68.98 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
++.|+|.|||+.......-+...+.-|+..+.-.||.++.+.........+-+-+.+.-. +..++..+++| +.+.+.-
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~P-Q~~iL~h 361 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAP-QVLILDH 361 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCC-HHHHhcc
Confidence 466899999999888777776667778888888889887532110111111122222211 35788889987 4444322
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
..+..|| ..+|-+|++||+++|||+|+++-
T Consensus 362 -~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 362 -QATGGFV---THCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred -Cccceee---ecCcchHHHHHHHcCCCeeeccc
Confidence 2233366 34777899999999999998773
No 329
>PLN02208 glycosyltransferase family protein
Probab=97.53 E-value=0.0025 Score=69.09 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=91.0
Q ss_pred CCCCeEEEecCCCCcCCHH-HHHHHHHH-HHHCCCceEEEeccCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCccC
Q 007075 354 TNGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILL 427 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~P~a~l~l~g~~~~----~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~ 427 (619)
+++.|+|.|||+..++.++ +.++...+ ....|. +|+.-.+.+ .+.+-+.+.++... ..+++.+++|
T Consensus 249 ~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~P- 320 (442)
T PLN02208 249 PPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQ- 320 (442)
T ss_pred CCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCC-
Confidence 3467899999999988887 77777776 777776 455432111 01122334444332 3466778887
Q ss_pred cHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHH-hcCCCcccc------CCHHHHHH
Q 007075 428 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQ 498 (619)
Q Consensus 428 ~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~-~~gl~~~v~------~~~~~y~~ 498 (619)
+.+.++- ..+..|| ..+|-++++||+++|||+|+++- +.+ ..+.++. ..|..--+. -+.++..+
T Consensus 321 Q~~iL~H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ 393 (442)
T PLN02208 321 QPLILDH-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQV---LFTRLMTEEFEVSVEVSREKTGWFSKESLSN 393 (442)
T ss_pred HHHHhcC-CccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhH---HHHHHHHHHhceeEEeccccCCcCcHHHHHH
Confidence 5555432 4444566 24777899999999999999874 322 2233333 355543231 25567776
Q ss_pred HHHHhhcCH-HHHHHHHHHHHH
Q 007075 499 LALQLASDV-TALANLRMSLRD 519 (619)
Q Consensus 499 ~a~~L~~d~-~~~~~lr~~~r~ 519 (619)
.+.++..++ +..+++|++.++
T Consensus 394 ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 394 AIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 676777665 445566666554
No 330
>PLN00164 glucosyltransferase; Provisional
Probab=97.52 E-value=0.0021 Score=70.51 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEcC
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLP 423 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~-------~~~----~~~~l~~~~~~~Gi~~~rv~f~g 423 (619)
.+.|+|.||++...+..+.++..+.-|+..+.-.||++..+.. +.. +-+.+.++.+. .-+++.+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----~g~~v~~ 345 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKG-----RGLVWPT 345 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcC-----CCeEEee
Confidence 4568999999998888888999999999999988888763211 001 11222222211 2356678
Q ss_pred CccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHH-HHhcCCCcccc--------CC
Q 007075 424 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSL-LTKVGLKHLIA--------KN 492 (619)
Q Consensus 424 ~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~-l~~~gl~~~v~--------~~ 492 (619)
++| +.+++.- ..+-.|| ..+|-+|++||+++|||+|+++- +.+ ..+.. ...+|..-.+. -+
T Consensus 346 w~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 346 WAP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQH---LNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred cCC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccch---hHHHHHHHHhCeEEEeccccccCCcCc
Confidence 887 4444432 2233455 24777899999999999998873 322 22333 34455543221 14
Q ss_pred HHHHHHHHHHhhcCHH-HHHHHHHHHH
Q 007075 493 EDEYVQLALQLASDVT-ALANLRMSLR 518 (619)
Q Consensus 493 ~~~y~~~a~~L~~d~~-~~~~lr~~~r 518 (619)
.++..+.+.++..|++ ..+++|++.+
T Consensus 418 ~e~l~~av~~vm~~~~~~~~~~r~~a~ 444 (480)
T PLN00164 418 AAELERAVRSLMGGGEEEGRKAREKAA 444 (480)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5666666667776643 2334444443
No 331
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.52 E-value=0.0012 Score=68.43 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
++..++.+++..... ++ .+++++.|+..+++.|.+. .. ...++|.+.+.. ..++..+
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~--~~-------------~~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA--AD-------------PRPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc--cc-------------ccCCCEEEeecC--hHHHHHH
Confidence 445567788777432 33 4567779988888887541 00 003788888864 2678888
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCc-cccchhHHHHHhcCCCccc
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLI 489 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~-~~~r~~~~~l~~~gl~~~v 489 (619)
+..||+++.. +|.+|++||+++|+|+|..+-.. .-...-+..+..+|+...+
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 9999999932 67788999999999999887643 3344557888888887654
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0055 Score=58.55 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=102.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFN-----PHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------SLNN 71 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~------~~~~ 71 (619)
-|+.|...+++..|-..|.++-... .++ ...|...+.+|. ..+.++|+.++++++++..+-.. .+..
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ 118 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIE 118 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence 4566666777777777777776542 222 334444555554 45999999999999998654433 3457
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-----
Q 007075 72 LGVVYTVQ-GKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----- 139 (619)
Q Consensus 72 lg~~~~~~-g~~~eA~~~~~~al~~~p~~~------~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~----- 139 (619)
+|.+|... .++++|+.+|+++-+...... .++...+..-..+++|.+|+..|++.....-++.-..+.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 88888654 899999999999988765432 345556777778899999999999998766555432221
Q ss_pred HHHHHHHhhcCCcHHHHHHHHH
Q 007075 140 RLLAMNYINEGHDDKLFEAHRD 161 (619)
Q Consensus 140 ~~la~~~~~~g~~~~a~~~~~~ 161 (619)
+--+++++...+.-.+..++++
T Consensus 199 lkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHH
Confidence 1134555554444333444443
No 333
>PLN02555 limonoid glucosyltransferase
Probab=97.50 E-value=0.002 Score=70.33 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=91.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHH-HHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 356 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 356 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~-~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
+.|+|.|||+...+.+..+.-.+..|+..+.-.||.+......... ...+-+.+.+ .+. +|+.+.+++| +.+.+ .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~~-~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KAG-DKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hcC-CceEEEecCC-HHHHh-C
Confidence 4578999999988888888888888888888778877532110000 0111111211 133 6788889987 44444 3
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHH-hcCCCcccc--------CCHHHHHHHHHHh
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA--------KNEDEYVQLALQL 503 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~-~~gl~~~v~--------~~~~~y~~~a~~L 503 (619)
...+..|+ ..+|.+|++||+++|||+|+++- +.+ ..+.++. ..|+.--+. -+.++..+...++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQV---TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccH---HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 35577777 34777899999999999998774 322 2233333 335543231 1456666666666
Q ss_pred hcCHHHHHHHHHHHHH
Q 007075 504 ASDVTALANLRMSLRD 519 (619)
Q Consensus 504 ~~d~~~~~~lr~~~r~ 519 (619)
..+++ -+.+|++.++
T Consensus 427 m~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGEK-AAELKQNALK 441 (480)
T ss_pred hcCch-HHHHHHHHHH
Confidence 65532 2345554443
No 334
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.0072 Score=63.22 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=102.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 7 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 86 (619)
Q Consensus 7 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 86 (619)
--..++++..|...|++||..+-.+...|...+.+-+..+....|...+.+|+.+-|.-.+.|+..-.+-..+|+...|.
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 33456778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 87 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 87 ~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
+.|++-+...|+ ..+|...-..-...++.+.|...|++-+-..|+-
T Consensus 162 qiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v 207 (677)
T KOG1915|consen 162 QIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKV 207 (677)
T ss_pred HHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH
Confidence 888888888887 5567777777777777778888888777777763
No 335
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.46 E-value=0.0018 Score=70.14 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=85.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHh
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 434 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~ 434 (619)
.+.++|.|||+...++++.++..+.-|...| .||.+..+. .+.+-+.+.++ +..+++.+.+++| +.+.+.
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 4568999999999999999998888886666 677764321 11111122221 2236788889988 455443
Q ss_pred cccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHh-cCCCcccc-------CCHHHHHHHHHHhhcC
Q 007075 435 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLASD 506 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~L~~d 506 (619)
...+..|| ..+|.+|++||+++|||+|+++--. -....+.++.. +|+.--+. -+.++..+.+.++..|
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWT-DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG 408 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchh-cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC
Confidence 23344666 3477889999999999999987411 01223444432 23331121 1567777777777766
Q ss_pred H
Q 007075 507 V 507 (619)
Q Consensus 507 ~ 507 (619)
.
T Consensus 409 ~ 409 (449)
T PLN02173 409 E 409 (449)
T ss_pred C
Confidence 4
No 336
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.46 E-value=0.00022 Score=47.17 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555566666666666666666555554
No 337
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.00025 Score=46.92 Aligned_cols=31 Identities=39% Similarity=0.614 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 64 (619)
+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555543
No 338
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.44 E-value=0.0022 Score=67.75 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------------------ 98 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------------------ 98 (619)
.+-.-..+..+.++-+++.++|++++|+.+.++..|+. .......+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34444556788999999999999999999999988875 2334567777888777765211
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 99 -------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS--RNAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 99 -------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
...+...||.|..++|+.+||++.++..++..|.. ...+.+ +...++..+.++++...+.++.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren--Lie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN--LIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH--HHHHHHhcCCHHHHHHHHHHhc
Confidence 13355679999999999999999999999988864 334444 6777788888888777666553
No 339
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0023 Score=65.18 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
+|..+.....+.+..++|...|.+|++..+-....|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777777788889999999999997667778899999999777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 007075 113 AGSISLAIDAYEQCLKIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWG 163 (619)
Q Consensus 113 ~g~~~eA~~~~~~al~~~P~~~--~a~~~~~la~~~~~~g~~~~a~~~~~~~~ 163 (619)
.|+.++|...|++++..-|... ...+. .+...-...|+.+......+++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~-~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWK-KFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHH-HHHHHHHHHS-HHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998877655 11121 12333344566665554444433
No 340
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.42 E-value=0.002 Score=67.70 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=89.0
Q ss_pred CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC
Q 007075 367 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 446 (619)
Q Consensus 367 ~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~ 446 (619)
.++-|.++++..++.++.|+.++++...+ ....+.+.+.+...+... .+.+.. .+-...++.||+.|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~-~~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDV-SIVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCC-eEEEcC-----CchHHHHHhCcchh----
Confidence 35669999999999999999999986543 123334555666665542 233221 23455667799888
Q ss_pred CCCchhHHHhhhcCCcEEe-ccCCccccchhHHHH--HhcCCCc----------ccc--CCHHHHHHHHHHhhcCHHHHH
Q 007075 447 YAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLL--TKVGLKH----------LIA--KNEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 447 ~~g~~t~~eAl~~GvPvVt-~~g~~~~~r~~~~~l--~~~gl~~----------~v~--~~~~~y~~~a~~L~~d~~~~~ 511 (619)
-.+||+|+|++.+|+|.|. .....+--.++-.++ .-.|++. ++- .+++...+.+..+..|++.++
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 5679999999999999774 333322222222221 1234443 332 368888888889999987755
Q ss_pred HHHHHHHH
Q 007075 512 NLRMSLRD 519 (619)
Q Consensus 512 ~lr~~~r~ 519 (619)
......+.
T Consensus 346 ~~~~~~~~ 353 (373)
T PF02684_consen 346 KQKELFRE 353 (373)
T ss_pred HHHHHHHH
Confidence 54444433
No 341
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.41 E-value=0.00038 Score=45.87 Aligned_cols=32 Identities=38% Similarity=0.679 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 342
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0082 Score=57.77 Aligned_cols=126 Identities=18% Similarity=0.133 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLN 70 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~ 70 (619)
..-+++|...++|++|..++.+|.+...++ +.++-..+.+..+...+.|+..+|++|..+ .|+.+..-.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence 345678888999999999999998654333 345667788888899999999999999876 344444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
..+--.....+.++|+..|++++.+-... .+.+...+.+|....++++|-..+.+-.
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 44444566778999999999998774432 3455667888888999998887777653
No 343
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.0078 Score=62.95 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=120.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 84 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 84 (619)
....+.+.+...|+.++++-|+ ++..|...|.....+.+...|.+.+-.|+-.+|.+.- .-..-.+-.++++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHH
Confidence 3467899999999999999886 4677888888889999999999999999999998653 3334455678899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hcCCcHHHHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI----NEGHDDKLFEAHR 160 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~----~~g~~~~a~~~~~ 160 (619)
-...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|+....-+..- ++-..|+ ..|.++.+...++
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe----llwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE----LLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH----HHHHHhhhhhhhcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764332221 2233343 4566666666655
Q ss_pred HHHH
Q 007075 161 DWGK 164 (619)
Q Consensus 161 ~~~~ 164 (619)
.+.+
T Consensus 532 rlL~ 535 (677)
T KOG1915|consen 532 RLLD 535 (677)
T ss_pred HHHH
Confidence 5443
No 344
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.38 E-value=0.0017 Score=72.53 Aligned_cols=120 Identities=23% Similarity=0.204 Sum_probs=102.0
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007075 43 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 122 (619)
Q Consensus 43 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~ 122 (619)
.+.+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++-..+-.+-.+|.++|++++|...
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35689999999999999999999999999999999999999999988888888888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 007075 123 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 165 (619)
Q Consensus 123 ~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 165 (619)
|+++++.+|+ .+.... +-+.|.+.+++.+..++.-+..+.
T Consensus 100 Ye~~~~~~P~-eell~~--lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYH--LFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHhhCCc-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 444443 556777777776655554444443
No 345
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0018 Score=65.05 Aligned_cols=125 Identities=16% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEe--ecCCCCCC--chhHHHhhhc
Q 007075 384 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLYM 459 (619)
Q Consensus 384 ~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~--Ldt~~~~g--~~t~~eAl~~ 459 (619)
.|+...+|-|.| ++++...+.+.+.....=+ +..++.. -+|+..++..||+- |.||..|- .+-+.|-.-|
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~~~v~-~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGc 364 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNLQHVQ-VCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGC 364 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhccccee-eeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhcC
Confidence 477777777877 8999999999999886222 3457776 58999999999964 55655433 5689999999
Q ss_pred CCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhc----CHHHHHHHHHHHHHH
Q 007075 460 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 520 (619)
Q Consensus 460 GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~----d~~~~~~lr~~~r~~ 520 (619)
|+||+++.=. .-.-|-..|.++++-.|.++..+....|.+ |...+++++..+++.
T Consensus 365 glPvcA~~fk------cl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 365 GLPVCAVNFK------CLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCceeeecch------hHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 9999986654 223355668999999999999999999999 999999999999875
No 346
>PLN02534 UDP-glycosyltransferase
Probab=97.36 E-value=0.0048 Score=67.56 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHH-HHHHHHcCCCCCcEEEcCCccCcHHHHH
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 433 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l-~~~~~~~Gi~~~rv~f~g~~~~~~~~~~ 433 (619)
+..|+|.|||+..++.++-+.-.+.-|+..+.-.||.+..+...+.....+ -+-+.+. +...++++.+++| +.+.
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~i-- 357 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLI-- 357 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHH--
Confidence 456899999999888888777777889999999999986321111111111 0122222 2235678889987 4443
Q ss_pred hcccCcE--eecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 434 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 434 ~~~~~Dv--~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
+...++ |+ ..+|.+|++||+++|||+|+++-
T Consensus 358 -L~h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 358 -LSHPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred -hcCCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 344444 55 34778899999999999999875
No 347
>PLN03015 UDP-glucosyl transferase
Probab=97.36 E-value=0.0029 Score=68.71 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 422 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~--------~~----~~~~~l~~~~~~~Gi~~~rv~f~ 422 (619)
.+.|+|.|||+...+.++-++..+.-|+..+.-.||.+..+.. .+ .+-+.+.++.+..| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4678999999999999999999999999999999999853210 00 01123333332222 5667
Q ss_pred CCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC
Q 007075 423 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 423 g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g 468 (619)
+++| +.+.+. ...+..|| ..+|.+|++||+++|||+|+++-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 8887 555554 34444566 24777899999999999999874
No 348
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0059 Score=59.32 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNL 106 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~a~~~L 106 (619)
..+.+..++...|+|.-....+.+.++.+ |..+.....||.+.++.|+.+.|..++++.-+.+ ......+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45678888889999999999999999988 6678888999999999999999999999654432 2345578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 107 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 107 g~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
+.++.-.+++.+|...|.+++..+|.++.+..+..+++.|. |+..+|.+..+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GKLKDALKQLEAM 312 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976766665 5555555554443
No 349
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.35 E-value=0.0022 Score=67.37 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=86.8
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCc
Q 007075 354 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 428 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~ 428 (619)
..+..++.++.+..... + .+..++.++.+. ++..+++...+ .+.....+.+.+.+. ++|++.+.++ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 56667788998887766 5 455566666665 77777776543 346677777666665 3899999987 7
Q ss_pred HHHHHhcccCcEeecCCCCCCchhHH-HhhhcCCcEEecc--CCccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhc
Q 007075 429 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 505 (619)
Q Consensus 429 ~~~~~~~~~~Dv~Ldt~~~~g~~t~~-eAl~~GvPvVt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~ 505 (619)
.+++.+++.|+++| -++| ++. ||.++|+|||++. |+...+|.. |-.-+|..+.++..+.+.+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 99999999999997 5666 777 9999999999985 333333332 4455566788888877777776
Q ss_pred CHH
Q 007075 506 DVT 508 (619)
Q Consensus 506 d~~ 508 (619)
+.+
T Consensus 318 ~~~ 320 (346)
T PF02350_consen 318 DKD 320 (346)
T ss_dssp -HH
T ss_pred ChH
Confidence 743
No 350
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00049 Score=45.32 Aligned_cols=31 Identities=35% Similarity=0.585 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 64 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 64 (619)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 351
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.007 Score=54.95 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
+...++..+...|++++|+..+++++..+|.+..++..+-.+|..+|+..+|++.|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777888889999999999999999999999999999999999999999998887754
No 352
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.34 E-value=0.011 Score=64.23 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=88.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEeccCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEcCCccC
Q 007075 355 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 427 (619)
Q Consensus 355 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~-----~~~~~~l--~~~~~~~Gi~~~rv~f~g~~~~ 427 (619)
.+.|+|.|||+...+..+.++-.+.-|++.+...||.+..+... +.....+ -+-+.+. +. +|..+.+++|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~~-~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-LE-EVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-cc-CCeEEEeeCC-
Confidence 45689999999999999999999999999999999988642110 0000000 1112211 23 6777789987
Q ss_pred cHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccC--CccccchhHHHHHh---cCCCccc----cCCHHHHHH
Q 007075 428 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK---VGLKHLI----AKNEDEYVQ 498 (619)
Q Consensus 428 ~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g--~~~~~r~~~~~l~~---~gl~~~v----~~~~~~y~~ 498 (619)
+.+.+.- ..+-.|+ ..+|.+|++||+++|||+|+++- +.+ ..+..+.. .|+.-.. .-+.++..+
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~---~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQP---ANAKLLEEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccch---HHHHHHHHHhCceEEeecCcCCcCcHHHHHH
Confidence 4554432 2233455 24778899999999999998774 322 22333332 3332111 125566777
Q ss_pred HHHHhhcCH
Q 007075 499 LALQLASDV 507 (619)
Q Consensus 499 ~a~~L~~d~ 507 (619)
.+.++..|+
T Consensus 410 av~~vm~~~ 418 (455)
T PLN02152 410 CLEAVMEEK 418 (455)
T ss_pred HHHHHHhhh
Confidence 677766654
No 353
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.014 Score=61.08 Aligned_cols=260 Identities=14% Similarity=0.139 Sum_probs=140.8
Q ss_pred EEcccCCH-HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEec--------ccCC-----CCCCCCCccEEEe
Q 007075 246 RDIYGIDE-KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW--------IGYP-----NTTGLPTIDYRIT 311 (619)
Q Consensus 246 ~~~~~~~~-~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~--------~G~p-----~ttg~~~~Dy~i~ 311 (619)
+....+|. ..+-+-++.-++|++|-.-+--..|.+.-...|-+|+-+.= -||- .-.-+..+|.+++
T Consensus 104 h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~a 183 (419)
T COG1519 104 HQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILA 183 (419)
T ss_pred EEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeee
Confidence 34444554 45667788999999996544333444444445556654321 1110 0112355777776
Q ss_pred cCCCCCCCccCC---CccceEEcCCCccccCCCCCCCC----CCCCCCCCCCCeEEEecCCCCcCCHH-HHHHHHHHHHH
Q 007075 312 DSLADPPETKQK---HVEELIRLPECFLCYTPSPEAGP----VCPTPALTNGFITFGSFNNLAKITPK-VLQVWARILCA 383 (619)
Q Consensus 312 d~~~~p~~~~~~---~~E~l~~lp~~~~~~~p~~~~~~----~~~~~~l~~~~~~f~~~~~~~K~~~~-~~~~~~~il~~ 383 (619)
-.-. +.+++ =.-++...-|.-+...|.+.... -+.. +.....++.+... +...++ .++++.+++++
T Consensus 184 Qse~---D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~--l~~~r~v~iaaST-H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 184 QSEE---DAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQ--LGGHRPVWVAAST-HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred cCHH---HHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHh--cCCCCceEEEecC-CCchHHHHHHHHHHHHhh
Confidence 3211 11111 01113333333333333322211 1111 2221333333333 444444 89999999999
Q ss_pred CCCceEEEeccCCCCHHHHHHHHHHHHHcCCCC-----------C-cEEEcCCccCcHHHHHhcccCcEee--cCCCCCC
Q 007075 384 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES-----------L-RVDLLPLILLNHDHMQAYSLMDISL--DTFPYAG 449 (619)
Q Consensus 384 ~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~-----------~-rv~f~g~~~~~~~~~~~~~~~Dv~L--dt~~~~g 449 (619)
.||..|+++-.. ++--..+.+.+++.|+.. + .|.+... ..+...+|..+||+. -|+--.|
T Consensus 258 ~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l~y~~adiAFVGGSlv~~G 331 (419)
T COG1519 258 FPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGLLYGIADIAFVGGSLVPIG 331 (419)
T ss_pred CCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHHHHhhccEEEECCcccCCC
Confidence 999999998543 123356777778877652 1 3444333 368889999999985 3443377
Q ss_pred chhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccCCHHHHHHHHHHh-hcCHHHHHHHHHHHHHH
Q 007075 450 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL-ASDVTALANLRMSLRDL 520 (619)
Q Consensus 450 ~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L-~~d~~~~~~lr~~~r~~ 520 (619)
|--.+|++++|+|||+=+--.-.+.....++.+ |- .+.++| ++.++.++.+ ..|++.+.++++...+-
T Consensus 332 GHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga-~~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 332 GHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GA-GLQVED-ADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred CCChhhHHHcCCCEEeCCccccHHHHHHHHHhc-CC-eEEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778999999999999833322222222333322 22 234566 5555555554 45687777776665543
No 354
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.0056 Score=55.59 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHC----------------------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 62 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 62 (619)
|......++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 445567789999999999999874321 2345567788889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 63 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 63 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 95 (619)
|.+..++..+-.+|...|+..+|+..|++..+.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543
No 355
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0074 Score=58.90 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=103.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 81 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 81 (619)
.++.++.+++-|....++..+++.+ ..+..||..+. ..+++.+|.-+|+..-+..|..+..+...+.++..+|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 4677788899999999988877654 33444555443 23568999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCH
Q 007075 82 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSR 134 (619)
Q Consensus 82 ~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~-~~al~~~P~~~ 134 (619)
|++|...++.++..++++++.+.|+-.+-..+|.-.++.+-+ .+.....|.++
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 999999999999999999999999999999999887766544 45555567664
No 356
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.29 E-value=0.0035 Score=68.52 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHH
Q 007075 13 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 13 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~lg~~~~~~g~~~eA~~~ 88 (619)
+.+.|.+.++...+..|+..-..+..|.++...|+.++|++.|++++.....-.+ .++.++.++..+.+|++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 3444555555555555555555555555555555555555555555432222111 344455555555555555555
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHcCCH
Q 007075 89 IEKAIAANPTYA-EAYNNLGVLYRDAGSI 116 (619)
Q Consensus 89 ~~~al~~~p~~~-~a~~~Lg~~~~~~g~~ 116 (619)
+.+..+.+.-.. -..+..|.++..+|+.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 555554433322 1223344445555554
No 357
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.24 E-value=0.0071 Score=60.79 Aligned_cols=263 Identities=15% Similarity=0.143 Sum_probs=143.9
Q ss_pred HHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEec--cc---CCCCCCCC-------------CccEEEecCCCC
Q 007075 255 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW--IG---YPNTTGLP-------------TIDYRITDSLAD 316 (619)
Q Consensus 255 ~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~--~G---~p~ttg~~-------------~~Dy~i~d~~~~ 316 (619)
++.+..+.++-+=++--+-....--+.++..|.-|-|+.| || |-.++++. .|-++++
T Consensus 30 avi~~a~~~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGaDLYe~~~~lk~rlfy~lRR~aq~rvg~v~a----- 104 (322)
T PRK02797 30 AVIAKAKANRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGADLYEESKGLKFRLFYPLRRLAQKRVGHVFA----- 104 (322)
T ss_pred HHHHHHhhCccceEEEecCCCHHHHHHHHhCCcCccceEEEEEChhhhhcccchhHHHHHHHHHHHHhhcCeEEE-----
Confidence 3445555555555544222222223445556777788866 67 54444432 3445554
Q ss_pred CCCccCCCccceEEcCCCccccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCceEEEe
Q 007075 317 PPETKQKHVEELIRLPECFLCYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK 392 (619)
Q Consensus 317 p~~~~~~~~E~l~~lp~~~~~~~p~~~~~~--~~~~~~l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a~l~l~ 392 (619)
-.|.-.+|..+-...|+.++.|.+.. .+. ......-+.+.+|+-.-|+. .-.|-+.++...+-. ..+.++++.
T Consensus 105 trGD~~~~a~~~~~v~~~llyfpt~m-~~~l~~~~~~~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~P 181 (322)
T PRK02797 105 TRGDLSYFAQRHPKVPGSLLYFPTRM-DPSLNTMANDRQRAGKMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVP 181 (322)
T ss_pred ecchHHHHHHhcCCCCccEEecCCcc-hhhhccccccccCCCceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEE
Confidence 11222333444445555543332221 111 11111123345555444444 444555666555443 445666653
Q ss_pred -ccCCCCHHHHHHHHHHHHHcCCCCCcEEEc-CCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCC
Q 007075 393 -CKPFCCDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 469 (619)
Q Consensus 393 -g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~-g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~ 469 (619)
|-|.+++..++++++...++.-. +++..+ ..++ -.|++++++.|||..--+.- -|--|+|=.+.+|+||+.....
T Consensus 182 lsYp~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~-f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n 259 (322)
T PRK02797 182 MGYPANNQAYIEEVRQAGLALFGA-ENFQILTEKLP-FDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN 259 (322)
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCc-ccEEehhhhCC-HHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC
Confidence 55445778999999988887654 666654 4555 69999999999999988865 4444888899999999975443
Q ss_pred ccccchhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 007075 470 VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 543 (619)
Q Consensus 470 ~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~ 543 (619)
+ ....+...|++=+...+ .. |.....+.++++...-...-.|+.+.++..+.++|..+
T Consensus 260 ~-----fwqdl~e~gv~Vlf~~d--~L---------~~~~v~e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~~ 317 (322)
T PRK02797 260 P-----FWQDLTEQGLPVLFTGD--DL---------DEDIVREAQRQLASVDKNIIAFFSPNYLQGWRNALAIA 317 (322)
T ss_pred c-----hHHHHHhCCCeEEecCC--cc---------cHHHHHHHHHHHHhhCcceeeecCHhHHHHHHHHHHHh
Confidence 2 34567788888532222 11 22111222222222111122288888888888877654
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.00028 Score=70.77 Aligned_cols=92 Identities=24% Similarity=0.266 Sum_probs=84.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 42 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 121 (619)
Q Consensus 42 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~ 121 (619)
.+..|.+++|++.|..++.++|..+..+...+.++..+++...|+..+..+++++|+...-|-..|.+...+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 007075 122 AYEQCLKIDPDS 133 (619)
Q Consensus 122 ~~~~al~~~P~~ 133 (619)
.++.+++++-+.
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 999999886553
No 359
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.22 E-value=0.0042 Score=64.65 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=52.5
Q ss_pred CcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCcc-ccchhHHHHHhcCCCccccC
Q 007075 417 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH-AHNVGVSLLTKVGLKHLIAK 491 (619)
Q Consensus 417 ~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~-~~r~~~~~l~~~gl~~~v~~ 491 (619)
+++.+.++.+ .++...+..||+++.. +|.+|+.||+++|+|+|..+-... -....+..+...|+...+..
T Consensus 229 ~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~ 299 (321)
T TIGR00661 229 ENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299 (321)
T ss_pred CCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh
Confidence 7888888754 5788899999999942 566789999999999998775422 33456777888888755443
No 360
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.20 E-value=0.023 Score=62.10 Aligned_cols=140 Identities=17% Similarity=0.081 Sum_probs=109.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHH--------HHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 11 MLKFDMAIVFYELAFHFNPHCAEAC--------NNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~~p~~~~a~--------~~la~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
.||-+.++..+.++.+. .+--... +.....+. ...+.+.|.++++...+..|+..-.+...|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 57889999999998773 2221111 11111111 24578889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCc
Q 007075 79 QGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 152 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~ 152 (619)
.|+.++|++.|++++...... .-+++.++.++..++++++|..++.+..+.+.- ..+.+.+..+.++...++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccc
Confidence 999999999999998544332 245788999999999999999999999986544 4677777788888888887
No 361
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0024 Score=63.94 Aligned_cols=105 Identities=23% Similarity=0.215 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
+.-+-.-|+-|+..++|..|+.+|.+.++..-.+ +..|.|.+.+.+..|+|..|+....+++.++|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4456677888999999999999999999875443 346889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 108 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 108 ~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
.|+..+.++++|..+++..++++-+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999998876654443
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0026 Score=66.60 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=110.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC--------CHHHHHHHHHHH
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA-LSIKPN--------FSQSLNNLGVVY 76 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a-l~l~p~--------~~~~~~~lg~~~ 76 (619)
..|.++.+...+..-.+.++....+.+.+.+..++.++..|++.+|.+.+... +...|. ....|+|+|.++
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 34566667777777777788888889999999999999999999999887544 223333 223679999999
Q ss_pred HHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 77 TVQGKMDAAAEMIEKAIAA---------NP---------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~---------~p---------~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
++.|.|.-+..+|.+|++. .| ..-+..+|.|..|...|+.-.|.++|.++...--.++..|.
T Consensus 294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999961 11 24578999999999999999999999999999888888887
Q ss_pred HH
Q 007075 139 NR 140 (619)
Q Consensus 139 ~~ 140 (619)
.+
T Consensus 374 Rl 375 (696)
T KOG2471|consen 374 RL 375 (696)
T ss_pred HH
Confidence 73
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.031 Score=53.61 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=99.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFS------QSLNNLGVV 75 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-g~~~~A~~~~~~al~l~p~~~------~~~~~lg~~ 75 (619)
++..+.++|+.++++++++..+- +.-+..+|.+|... .++++|+.+|+++-+...... ..+...+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 34558999999999999886543 33456889988755 899999999999988643322 234455666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 76 YTVQGKMDAAAEMIEKAIAANPTYAE-------AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~~p~~~~-------a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
-...++|.+|+..|++.....-++.. .+..-|.|+.-..+.-.+...+++-.+++|.....+-..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 67789999999999998877665532 344567777777888899999999999999887665443
No 364
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0052 Score=61.65 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
.-|+-|++.++|..|+.+|.++|+..-. ++..|.|.|.+....|+|..|+.-..+++.++|.+..+++.-+.+++.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3578899999999999999999986433 456789999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 007075 79 QGKMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~ 98 (619)
+.++++|..+.+..++.+..
T Consensus 166 Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHH
Confidence 99999999999998776544
No 365
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=96.96 E-value=0.022 Score=65.36 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=78.7
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHHHC----CCceEEEeccCCCCHHH----HHHHHHHHHHcCCCCCcEEEc
Q 007075 353 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSV----RHRFLSTLEQLGLESLRVDLL 422 (619)
Q Consensus 353 l~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----P~a~l~l~g~~~~~~~~----~~~l~~~~~~~Gi~~~rv~f~ 422 (619)
+..+.+++|...|+ +|...-+++...++.+-. ...++++.|++...+.. .+.+.+..+.-.+. +||+|+
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfl 552 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFL 552 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEE
Confidence 45677899998898 798888888766664311 24789998877533333 33343333333444 799998
Q ss_pred CCccCcHHHHHhcccCcEeecCCC--C-CCchhHHHhhhcCCcEEeccC
Q 007075 423 PLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMAG 468 (619)
Q Consensus 423 g~~~~~~~~~~~~~~~Dv~Ldt~~--~-~g~~t~~eAl~~GvPvVt~~g 468 (619)
..-. ..--..++..|||+|.|+. + ..||+-+=||.-|++-++...
T Consensus 553 e~Yd-~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlD 600 (778)
T cd04299 553 EDYD-MALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLD 600 (778)
T ss_pred cCCC-HHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeeccc
Confidence 8743 2222346799999999996 7 779999999999999995443
No 366
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.039 Score=57.64 Aligned_cols=133 Identities=23% Similarity=0.222 Sum_probs=95.1
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCCCHHH
Q 007075 2 YNLGVAYGE---MLKFDMAIVFYELAF-HFNPHCAEACNNLGVIYKD---------RDNLDKAVECYQMALSIKPNFSQS 68 (619)
Q Consensus 2 ~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~---------~g~~~~A~~~~~~al~l~p~~~~~ 68 (619)
+..|.++.+ .|+.++|+..+..++ ...+.+++.+..+|.+|.+ ....++|+..|+++.+++|+ ...
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~ 261 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYS 261 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccc
Confidence 456777877 899999999999854 4567789999999999863 23578999999999999964 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007075 69 LNNLGVVYTVQGKMDAAAEMIEKAI-AA-----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 135 (619)
Q Consensus 69 ~~~lg~~~~~~g~~~eA~~~~~~al-~~-----------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~ 135 (619)
-.|++.++...|.-.+...-+++.. ++ .-.+.-.+..++.+..-.|++++|++++++++++.|....
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 5677777777776444332222221 11 1122233455677788899999999999999999887653
No 367
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.94 E-value=0.042 Score=64.55 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=114.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-hCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 6 VAYGEMLKFDMAIVFYELAFH-FNPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~-~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
.-+.+.++.++|.+.+++||. +++... ..|..+-++...-|.-+.-.+.|++|.+.+.. ...+..|..+|...+
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~-~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA-YTVHLKLLGIYEKSE 1544 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHhh
Confidence 445678899999999999997 444432 23333333333445666777888888886532 346777888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
++++|.++|+..++..-+....|..+|..+..+++-++|...+.+|++.-|.......-.-++......|+.+.+...++
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 99999999999999888888899999999999999999999999999988884333333336677777788877555554
Q ss_pred HH
Q 007075 161 DW 162 (619)
Q Consensus 161 ~~ 162 (619)
..
T Consensus 1625 gl 1626 (1710)
T KOG1070|consen 1625 GL 1626 (1710)
T ss_pred HH
Confidence 43
No 368
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.044 Score=57.24 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=98.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKD---RDNLDKAVECYQM-ALSIKPNFSQSLNNLGVV 75 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~-al~l~p~~~~~~~~lg~~ 75 (619)
+=.+|....+|+.-+...+..-.+ .++.....+.+|.++.+ .|+.++|++.+.. .....+.+++.+..+|.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344677778888888877766555 44566677788888877 8888888888888 444566778888888888
Q ss_pred HHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh---------CCCCHHH
Q 007075 76 YTV---------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KI---------DPDSRNA 136 (619)
Q Consensus 76 ~~~---------~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al-~~---------~P~~~~a 136 (619)
|.. ....++|+.+|+++.+.+|+.. .=.|++.++...|...+...-.++.. ++ .......
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 754 1236788888888888886543 33556666666665333332222221 11 0111223
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 137 GQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 137 ~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
|-.-.+..+.+-.++.+++.+++++.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333455556667777776666554
No 369
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.037 Score=51.80 Aligned_cols=97 Identities=25% Similarity=0.211 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLY 110 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~a~~~Lg~~~ 110 (619)
-..++..+.+.+++++|+..++.++....+.. -+-.+|+.+..++|++++|+..+..... +.. .......|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 34567778899999999999999996543321 2567899999999999999998865422 221 22345579999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 007075 111 RDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 111 ~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
...|+.++|+..|+++++..++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCCh
Confidence 99999999999999999987554
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.86 E-value=0.0054 Score=65.55 Aligned_cols=107 Identities=26% Similarity=0.323 Sum_probs=94.4
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 36 NNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 36 ~~la~~~-~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
.|+|-+| ...|+...|++|+.+|+-+.|.... ...+|++++...|-...|-..+.+++.++...+-.++.+|..+..+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 3455555 4679999999999999999997654 6789999999999999999999999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007075 114 GSISLAIDAYEQCLKIDPDSRNAGQNRLL 142 (619)
Q Consensus 114 g~~~eA~~~~~~al~~~P~~~~a~~~~~l 142 (619)
.+.+.|++++++|++++|+++.....+.+
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999999887666433
No 371
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.80 E-value=0.0023 Score=42.12 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
.+|+.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666666666666666666666653
No 372
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=96.76 E-value=0.034 Score=58.89 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=77.8
Q ss_pred CCeEEEecCCCC--cCC-HHHHHHHHHHHHHCC-CceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 356 GFITFGSFNNLA--KIT-PKVLQVWARILCAVP-NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 356 ~~~~f~~~~~~~--K~~-~~~~~~~~~il~~~P-~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
+.+++..+.+.. |.. .+.+....+.+.+.. +..+++-..+-.....++.+.+... + .++|.+.+.++ ..++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~ 275 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVN--E--HPNFRLFKSLG-QERY 275 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhc--C--CCCEEEECCCC-hHHH
Confidence 356566777653 433 233333333333332 3323221111112234555544421 1 36899999987 7999
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcc-ccCCHHHHHHHHHHhhcCH
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDV 507 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~-v~~~~~~y~~~a~~L~~d~ 507 (619)
+.++..||+++ .+++..+-||.++|+|||++.+. ...|. .|-.-+ |..+.++.++.+.+ +.++
T Consensus 276 l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~R-~e~~~-------~g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 276 LSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGTR-QKGRL-------RADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred HHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecCC-chhhh-------hcCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 99999999999 43333448999999999987642 22221 133333 55688888887777 4555
No 373
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.76 E-value=0.00059 Score=68.57 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=32.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 78 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 134 (619)
..|.+++|++.+-.++.++|.....|...+.++.++++...|+.-|..+++++|+..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 345555555555555555555555555555555555555555555555555555543
No 374
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.75 E-value=0.069 Score=58.16 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------------
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------- 64 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~------------- 64 (619)
..+|..|...|+.+.|...|+++++.+=. -+..|.+.|..-....+++.|.++.++|...-..
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 34566677777777777777777665321 2456667776666777777777777777654111
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 65 -----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 130 (619)
Q Consensus 65 -----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 130 (619)
+...|..++......|-++.-...|++.+.+.--.|....|.|..+....-+++|.+.|++.+.+-
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 112455556666666667777777777777766667777777777777777777777777776663
No 375
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.72 E-value=0.0028 Score=41.70 Aligned_cols=30 Identities=37% Similarity=0.685 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKP 63 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p 63 (619)
+|+.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.69 E-value=0.004 Score=66.49 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=94.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFNPHCAE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
|..+...|+...|+.++..|+...|.... ...+||+++...+-.-.|-..+.+++.++-..+-.++.+|+++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 44456689999999999999999887544 57899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007075 84 AAAEMIEKAIAANPTYAEAYNNLGVLY 110 (619)
Q Consensus 84 eA~~~~~~al~~~p~~~~a~~~Lg~~~ 110 (619)
.|++.+++|++++|+++.+-..|-.+-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999877765543
No 377
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.067 Score=58.26 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=117.7
Q ss_pred HHcCCHHHHHHHHHHHHH-hCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFH-FNPH-----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP----NFSQSLNNLGVVYTV 78 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~-~~p~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~ 78 (619)
...|+..+-+..|.+|++ .+|. ....|..+|..|...|+.+.|...|+++++..= +.+..|++.|..-..
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 446788888999999886 4664 356889999999999999999999999998753 335689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 79 QGKMDAAAEMIEKAIAANPT------------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~------------------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
..+++.|+.++++|...-.. +...|..++......|=++.....|++.+.+.--.+....|+
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999998765211 245678889999999999999999999999987778777774
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 007075 141 LLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 141 ~la~~~~~~g~~~~a~~~~~ 160 (619)
++.+....-+++++++++
T Consensus 518 --AmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 518 --AMFLEEHKYFEESFKAYE 535 (835)
T ss_pred --HHHHHhhHHHHHHHHHHH
Confidence 333333333455565554
No 378
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=96.67 E-value=0.0077 Score=65.77 Aligned_cols=138 Identities=20% Similarity=0.168 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCC---CCc--EEEcCCccC------cHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCc
Q 007075 403 HRFLSTLEQLGLE---SLR--VDLLPLILL------NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 470 (619)
Q Consensus 403 ~~l~~~~~~~Gi~---~~r--v~f~g~~~~------~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~ 470 (619)
+.+...+++.|+. .|| |+|.|.--+ .-+|...+..||+.+-|+.| .-|-|-+|+.++|||.||..-..
T Consensus 424 DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsG 503 (633)
T PF05693_consen 424 DPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSG 503 (633)
T ss_dssp -HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBH
T ss_pred CHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchh
Confidence 4455566666664 245 667764211 13567777889999999988 88999999999999999855321
Q ss_pred cccchhHHHHHhcCC---Cc--cccCC-------HHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007075 471 HAHNVGVSLLTKVGL---KH--LIAKN-------EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 537 (619)
Q Consensus 471 ~~~r~~~~~l~~~gl---~~--~v~~~-------~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le 537 (619)
.|.-+....+- .+ .|-.. .+++.+....++. +...+..+|.+.+ . -|.+++|+.|...++
T Consensus 504 ----FG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae--~-LS~~~dW~~~~~yY~ 576 (633)
T PF05693_consen 504 ----FGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAE--R-LSDLADWKNFGKYYE 576 (633)
T ss_dssp ----HHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHH--H-HGGGGBHHHHCHHHH
T ss_pred ----HHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--H-HHHhCCHHHHHHHHH
Confidence 12212211111 11 22222 3333333344433 3333333343332 2 367899999999999
Q ss_pred HHHHHHHHHH
Q 007075 538 STYRNMWHRY 547 (619)
Q Consensus 538 ~~y~~~~~~~ 547 (619)
++|+.++++-
T Consensus 577 ~Ay~~AL~~a 586 (633)
T PF05693_consen 577 KAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 379
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.045 Score=55.13 Aligned_cols=120 Identities=16% Similarity=0.027 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTY---AEAYNNLGVLYRD 112 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~---~~a~~~Lg~~~~~ 112 (619)
.-+.++...|++.+|...+++.++..|.+--++..--.+++..|+.+.-...+++.+-. +++. ...+-.++..+.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999988888888999999999999999999887 6665 4566678889999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHH
Q 007075 113 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 158 (619)
Q Consensus 113 ~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~ 158 (619)
.|-|++|.+.-++++++||.+.-+.. ..+.++...++..++.+.
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~H--a~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASH--AKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHH--HHHHHHHhcchhhhHHHH
Confidence 99999999999999999998754443 366666667776665543
No 380
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.63 E-value=0.028 Score=57.88 Aligned_cols=200 Identities=13% Similarity=0.026 Sum_probs=117.9
Q ss_pred hHhCCccEEEeCCCCCCCCcchhhccC--CcceeEecccCCCCCCCCCccEEEecCCCCCCCccCCCccceEEcCCCccc
Q 007075 260 VREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLC 337 (619)
Q Consensus 260 i~~d~~Dilvdl~g~t~~~r~~~~a~r--~Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~ 337 (619)
+....+|++|-..+.|. ...++..| ..+.....++.|..- ...+|.+|+-.+=.+ .-..+++..++....
T Consensus 53 ~~~~~pdLiIsaGr~t~--~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~-----~~~~Nvl~t~ga~~~ 124 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTA--PAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRL-----PRGPNVLPTLGAPNR 124 (311)
T ss_pred ccCCCCcEEEECCCchH--HHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCc-----CCCCceEecccCCCc
Confidence 44467999998876664 23333334 344577788888654 788999887322111 123556666653322
Q ss_pred cCCCCCCCCC----CCCCCC--CCCCeEEEecCCCCcCCHH----HHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHH
Q 007075 338 YTPSPEAGPV----CPTPAL--TNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLS 407 (619)
Q Consensus 338 ~~p~~~~~~~----~~~~~l--~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~ 407 (619)
.+|....... .....+ +-..|.+|--++.++++++ +++...++.+..+ ..++|..+....+...+.|++
T Consensus 125 i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~ 203 (311)
T PF06258_consen 125 ITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRE 203 (311)
T ss_pred CCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHH
Confidence 3332111100 011122 2345667776777899887 5556666777777 666666554444556666666
Q ss_pred HHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccch
Q 007075 408 TLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 475 (619)
Q Consensus 408 ~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~ 475 (619)
.+.. ...+.+....+ ..-+.+++..||.++-|--. -+.+.||++.|+||.++.-+.-.+|+
T Consensus 204 ~~~~----~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 204 LLKD----NPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred hhcC----CCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 5542 25663334444 35688999999998855332 34689999999999877655333333
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.0054 Score=64.28 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=88.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CC--
Q 007075 4 LGVAYGEMLKFDMAIVFYELA-FHFNPH--------CAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KP-- 63 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l---------~p-- 63 (619)
.+..++..|+|.+|.+.+... +...|. ....|+|+|.++++.+.|.-+..+|.+|++. .|
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 455677889999998876543 222333 2235789999999999999999999999961 11
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 64 -------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 64 -------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
...+.++|.|..|...|+.-.|.++|.++++..-.+|..|..|+.|+..
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3346899999999999999999999999999999999999999998753
No 382
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.48 E-value=0.01 Score=58.81 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
+.+.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.+.|.+.++..|+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 3344467889999999999999999999999999999999999999999999999999999998887764
No 383
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.46 E-value=0.092 Score=55.00 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALS 60 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 60 (619)
..+....+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+.
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666655431 1345555566666666666666666665555
No 384
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.12 Score=50.12 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=100.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 007075 5 GVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLG 73 (619)
Q Consensus 5 g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg 73 (619)
|....+...+.++..+|++|..+. |+.+..-...+--..+..+.++|+++|++++.+-... .+.+...+
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 445566778899999999998763 4444444455555667789999999999999874322 23456678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Q 007075 74 VVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID----PDSRNAGQNRLLA 143 (619)
Q Consensus 74 ~~~~~~g~~~eA~~~~~~al~~------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~a~~~~~la 143 (619)
+++.+..++.+|...+.+-... .++.-.++...-.+|....+|..|...|+.+.++. |++.....+++
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-- 235 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-- 235 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH--
Confidence 8999999999998877664333 33334455556666777789999999999987763 33334444422
Q ss_pred HHHhhcCCcHHHH
Q 007075 144 MNYINEGHDDKLF 156 (619)
Q Consensus 144 ~~~~~~g~~~~a~ 156 (619)
.....|+.++.-
T Consensus 236 -~ayd~gD~E~~~ 247 (308)
T KOG1585|consen 236 -TAYDEGDIEEIK 247 (308)
T ss_pred -HHhccCCHHHHH
Confidence 223566665543
No 385
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.23 Score=51.22 Aligned_cols=124 Identities=12% Similarity=0.032 Sum_probs=70.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHH-HHcCCH
Q 007075 10 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFSQ---SLNNLGVVY-TVQGKM 82 (619)
Q Consensus 10 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l---~p~~~~---~~~~lg~~~-~~~g~~ 82 (619)
..|..+.|..+-+.+....|.-.+++...-...+..|+++.|+++.+...+. .++..+ +-..-+... ...-+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 3455555555555555555555555555555555556666666555444332 121111 111111111 112234
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 83 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
..|...-.+++++.|+...+-..-+..|+..|+..++-..++.+.+..|.-
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 555556666667777777777777788888888888888888888877753
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.38 E-value=0.009 Score=59.20 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007075 37 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 109 (619)
Q Consensus 37 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~ 109 (619)
+.|.-....|+.++|..+|+.|+.++|++++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4444456789999999999999999999999999999999999999999999999999999999999887654
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.34 E-value=0.037 Score=45.73 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 007075 85 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 159 (619)
Q Consensus 85 A~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~ 159 (619)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-++++.++++..-.....+..++-..|..+.....+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 356677788888888888888888888888888888888888887776633323333444444555544444433
No 388
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.76 Score=47.97 Aligned_cols=298 Identities=16% Similarity=0.142 Sum_probs=166.9
Q ss_pred ccChHHHhhHhHhhhhcCC-ceEEEEEecCcCCC-hhhHHHHHHHhhh-CCeEEEcc--cCC--------HHHHHHHhHh
Q 007075 196 FTHSVSYFIEAPLVYHDYQ-NYKVVVYSAVVKAD-AKTIRFREKVMKK-GGIWRDIY--GID--------EKKVAAMVRE 262 (619)
Q Consensus 196 ~~h~v~~~~~~~l~~~d~~-~fev~~ys~~~~~D-~~t~~~r~~~~~~-~~~~~~~~--~~~--------~~~~~~~i~~ 262 (619)
...|-..-+.++....+.. .|+.++.+++...| ++...+.....-. .+..-++. +-+ -..+-+.+.+
T Consensus 11 GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~ 90 (383)
T COG0381 11 GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEE 90 (383)
T ss_pred ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555544 49999999988776 3443343322111 22222232 111 1357778889
Q ss_pred CCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCCCCCccEE------------EecCCCCCCCcc------CCC
Q 007075 263 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYR------------ITDSLADPPETK------QKH 324 (619)
Q Consensus 263 d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg~~~~Dy~------------i~d~~~~p~~~~------~~~ 324 (619)
.++|+++=. |.|.....+.+++-.--|+| ||.- .|+.+.|-+ +|+-.+.|.+.. .-+
T Consensus 91 ~kPD~VlVh-GDT~t~lA~alaa~~~~IpV---~HvE-AGlRt~~~~~PEE~NR~l~~~~S~~hfapte~ar~nLl~EG~ 165 (383)
T COG0381 91 EKPDLVLVH-GDTNTTLAGALAAFYLKIPV---GHVE-AGLRTGDLYFPEEINRRLTSHLSDLHFAPTEIARKNLLREGV 165 (383)
T ss_pred hCCCEEEEe-CCcchHHHHHHHHHHhCCce---EEEe-cccccCCCCCcHHHHHHHHHHhhhhhcCChHHHHHHHHHcCC
Confidence 999987643 23332222222211112222 3322 255444433 233344454422 122
Q ss_pred ccc-eEEcCCCccc---cC--CCCCCCCCC-CCCCCCCCCeEEEecCCCC---cCCHHHHHHHHHHHHHCCCceEEEecc
Q 007075 325 VEE-LIRLPECFLC---YT--PSPEAGPVC-PTPALTNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCK 394 (619)
Q Consensus 325 ~E~-l~~lp~~~~~---~~--p~~~~~~~~-~~~~l~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~P~a~l~l~g~ 394 (619)
.|+ +...-++-+. +. ......... ......+..++..++.|-. +.-.+.+.++.+|++..|+..++.--.
T Consensus 166 ~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H 245 (383)
T COG0381 166 PEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVH 245 (383)
T ss_pred CccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 333 3333222110 10 111000000 0023334457788888763 445578888899999998888887543
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCC-cccc
Q 007075 395 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-VHAH 473 (619)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~-~~~~ 473 (619)
+ .+.+++.. ...++-. +||.+.+.+. ..++..++..|-+.| ..+|.-.=||-..|+||+++... ....
T Consensus 246 ~--~~~v~e~~---~~~L~~~-~~v~li~pl~-~~~f~~L~~~a~~il----tDSGgiqEEAp~lg~Pvl~lR~~TERPE 314 (383)
T COG0381 246 P--RPRVRELV---LKRLKNV-ERVKLIDPLG-YLDFHNLMKNAFLIL----TDSGGIQEEAPSLGKPVLVLRDTTERPE 314 (383)
T ss_pred C--ChhhhHHH---HHHhCCC-CcEEEeCCcc-hHHHHHHHHhceEEE----ecCCchhhhHHhcCCcEEeeccCCCCcc
Confidence 3 22233222 2444544 6899999886 689999999886666 45566678999999999987753 2334
Q ss_pred chhHHHHHhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHH
Q 007075 474 NVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 515 (619)
Q Consensus 474 r~~~~~l~~~gl~~~v~~~~~~y~~~a~~L~~d~~~~~~lr~ 515 (619)
++-+ |-.-+|-.+.+..++.+..++.|++..++|+.
T Consensus 315 ~v~a------gt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 315 GVEA------GTNILVGTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred ceec------CceEEeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence 4443 55556777889999999999999987776554
No 389
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.061 Score=59.93 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----------hhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMAL----------SIKP----------NFSQSLNNLGVVYTVQGKMDAAAEMIEKA 92 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al----------~l~p----------~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 92 (619)
..|++.|.-+...++.+.|+++|+++- ..+| .+...|...|..+...|+++.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 468899999999999999999999862 2233 23346667788888999999999999877
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 93 IAA---------------------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 93 l~~---------------------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
-.. ...+..+.+.||..|...|++.+|+.+|.+|-
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 543 23456678889999999999999998888764
No 390
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.21 E-value=0.013 Score=61.42 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=116.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 88 (619)
...|+.-.|-.-...++...|..+......+.++..+|+|+.|...+..+-..-..-..+..-+-...+.+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888989999999999999999999999999999999999887666555444444555555667889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 007075 89 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 151 (619)
Q Consensus 89 ~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~ 151 (619)
.+-.+.-.-..++....-+..-..+|-+++|.-++++.+.++|.....+.|.+-...|...|+
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 988888877788877766777778899999999999999999988777777665566666654
No 391
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.21 E-value=0.037 Score=47.01 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=59.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 80 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 80 (619)
++..++..|++-+|++..+..+...+++. ..+..-|.++..+ |...+-.+...-+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH----------
Confidence 46677788888888888888887766655 3444445444332 1111111111111
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 81 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 81 ~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.-.+++++.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 123556666666666666666666666666666666666666666654
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.21 E-value=0.49 Score=49.14 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=107.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007075 18 IVFYELAFHFNPHCAEACNNLGVIYKDRDN------------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 85 (619)
Q Consensus 18 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 85 (619)
..-|++.++.+|++..+|..+.......-. .+.-+.+|++|++.+|++...+..+-....+.-+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 345788889999999999999876654432 46678899999999999999988888888888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH-----------H-----HHHHHHHHHHH
Q 007075 86 AEMIEKAIAANPTYAEAYNNLGVLYRD---AGSISLAIDAYEQCLKIDPDSR-----------N-----AGQNRLLAMNY 146 (619)
Q Consensus 86 ~~~~~~al~~~p~~~~a~~~Lg~~~~~---~g~~~eA~~~~~~al~~~P~~~-----------~-----a~~~~~la~~~ 146 (619)
.+-+++++..+|++...|..+-..... .-.+++....|.++++.-.... . .+..+-++...
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999888776555443 3357788888888886422110 1 11111133344
Q ss_pred hhcCCcHHHHHHHHHHHH
Q 007075 147 INEGHDDKLFEAHRDWGK 164 (619)
Q Consensus 147 ~~~g~~~~a~~~~~~~~~ 164 (619)
...|..+.|+...+...+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLE 182 (321)
T ss_pred HHCCchHHHHHHHHHHHH
Confidence 567888888777766544
No 393
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.21 E-value=0.009 Score=40.04 Aligned_cols=25 Identities=48% Similarity=0.844 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMAL 59 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al 59 (619)
+.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 394
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.18 E-value=0.7 Score=47.81 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=64.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCcHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 7 AYGEMLKFDMAIVFYELAFHF---NPHCAE-----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 7 ~~~~~g~~~~A~~~~~~al~~---~p~~~~-----a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
..+..|+++.|+.+.+...+. .++-.+ .+...+... -..+...|.+.-.+++++.|+...+-..-+..++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 456789999999999876653 333211 122222222 23457788888888889999988888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 007075 79 QGKMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 79 ~g~~~eA~~~~~~al~~~p~ 98 (619)
.|+..++-..++.+.+..|.
T Consensus 276 d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC
Confidence 88888888877777776654
No 395
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.17 E-value=0.43 Score=48.68 Aligned_cols=122 Identities=24% Similarity=0.235 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC------
Q 007075 12 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQG------ 80 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g------ 80 (619)
.+..+|..+|+.+ .....+.+.++||.+|.. ..+..+|..+|++|.+..-.. ..+.+.+|..|..-+
T Consensus 91 ~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 3578888888844 456678888999998887 458999999999998864433 344778888776642
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 81 -KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 81 -~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
+...|+..|+++-... +..+..++|.+|.. ..+.++|..+|.++.+... ..+.++
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~ 228 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN 228 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence 2337888888887776 77888899987755 3478899999999988765 444444
No 396
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.09 E-value=0.096 Score=57.97 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=86.3
Q ss_pred CCCCCCCeEEE-ecCCC----CcCCHHHHHHHH-HHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 007075 351 PALTNGFITFG-SFNNL----AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 424 (619)
Q Consensus 351 ~~l~~~~~~f~-~~~~~----~K~~~~~~~~~~-~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~ 424 (619)
.+++++..+++ ..|+- .++-|.++++.. +.++ ++.++++... .+..++.+++.+...++- .+.+...
T Consensus 407 lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~--~~l~fvvp~a---~~~~~~~i~~~~~~~~~~--~~~ii~~ 479 (608)
T PRK01021 407 LHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA--STHQLLVSSA---NPKYDHLILEVLQQEGCL--HSHIVPS 479 (608)
T ss_pred cCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc--cCeEEEEecC---chhhHHHHHHHHhhcCCC--CeEEecC
Confidence 34543433344 33433 355577777765 1222 3566665322 223345566655443321 1222221
Q ss_pred ccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEe-ccCCccccchhHHHHH----hcCC----------Cccc
Q 007075 425 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLT----KVGL----------KHLI 489 (619)
Q Consensus 425 ~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt-~~g~~~~~r~~~~~l~----~~gl----------~~~v 489 (619)
. +-...++.||+.| -..||.|+|++.+|+|.|. ..-..+.-.++--+++ .+|+ ||++
T Consensus 480 ---~-~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEll 551 (608)
T PRK01021 480 ---Q-FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFI 551 (608)
T ss_pred ---c-chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhc
Confidence 1 1246778899998 5678999999999999775 3333222222222332 1232 5777
Q ss_pred ----cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 490 ----AKNEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 490 ----~~~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
..+++..++. +++..|++.++++++.+++.
T Consensus 552 qgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~l 585 (608)
T PRK01021 552 GGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDL 585 (608)
T ss_pred CCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 3456777665 69999998888888888764
No 397
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.08 E-value=0.011 Score=39.67 Aligned_cols=25 Identities=52% Similarity=0.829 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 103 YNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 103 ~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
+.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 398
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.08 E-value=0.27 Score=50.16 Aligned_cols=108 Identities=28% Similarity=0.324 Sum_probs=85.7
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHH
Q 007075 2 YNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------NLDKAVECYQMALSIKPNFSQSL 69 (619)
Q Consensus 2 ~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~ 69 (619)
++||..|.. ..+..+|..+|+++.+..-.. ..+.+.+|.+|..-. +..+|...|.++-... +..+.
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~ 190 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ 190 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence 567777776 458999999999998875443 355888888887642 3347999999988876 78889
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007075 70 NNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 114 (619)
Q Consensus 70 ~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 114 (619)
.++|.+|.. ..++++|..+|+++.+... ..+.++++ ++...|
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 999988865 4489999999999999887 88899999 666666
No 399
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.15 Score=50.86 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 007075 31 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVL 109 (619)
Q Consensus 31 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~a~~~Lg~~ 109 (619)
..+.-+.-+.-....|++.+|...+..+++..|++..+...++.+|...|+.++|...+...-....+. .......-..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344455666677889999999999999999999999999999999999999999998876642222221 1111111122
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 007075 110 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 165 (619)
Q Consensus 110 ~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 165 (619)
+.......+. ..+++.+..+|++..+.+. ++..+...|+.+++++.+-.+.++
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~--lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALA--LADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333322 3456667889999888776 888999999999988876655443
No 400
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.05 E-value=0.11 Score=53.78 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CcCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCC
Q 007075 367 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 446 (619)
Q Consensus 367 ~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~ 446 (619)
.+.-|-++++..++.++.|+.++++--.+ ..-+++...+.......-.+++.. .+-...+..||+.|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 46778899999998889999999996543 332333333333222111233322 24456777799988
Q ss_pred CCCchhHHHhhhcCCcEEe-ccCCccccchhHHHH--HhcCCCccccC------------CHHHHHHHHHHhhcCHHHHH
Q 007075 447 YAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLL--TKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 511 (619)
Q Consensus 447 ~~g~~t~~eAl~~GvPvVt-~~g~~~~~r~~~~~l--~~~gl~~~v~~------------~~~~y~~~a~~L~~d~~~~~ 511 (619)
-.+||.++|++-+|+|.|. ..-+.+.-.++-.++ ...+++.++++ +++...+....|..|...++
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 5668999999999999774 333222111111111 12345544443 35555556666666665544
Q ss_pred HHHHHHH
Q 007075 512 NLRMSLR 518 (619)
Q Consensus 512 ~lr~~~r 518 (619)
++.+..+
T Consensus 350 ~~~~~~~ 356 (381)
T COG0763 350 ALKEKFR 356 (381)
T ss_pred HHHHHHH
Confidence 4444443
No 401
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.05 E-value=0.35 Score=54.18 Aligned_cols=125 Identities=24% Similarity=0.286 Sum_probs=97.9
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCH
Q 007075 2 YNLGVAYGEM-----LKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRD-----NLDKAVECYQMALSIKPNFS 66 (619)
Q Consensus 2 ~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-----~~~~A~~~~~~al~l~p~~~ 66 (619)
+.+|.++..- .|.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. +++.|..+|.++-++ +++
T Consensus 248 ~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~ 325 (552)
T KOG1550|consen 248 YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNP 325 (552)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCc
Confidence 3456665543 5899999999999771 1225568889999998743 788899999999886 445
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 007075 67 QSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----GSISLAIDAYEQCLKID 130 (619)
Q Consensus 67 ~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~----g~~~eA~~~~~~al~~~ 130 (619)
.+.+.+|.++.... ++..|.++|..|.+. .+..+.+.++.+|..- -+.++|..+|.++.+.+
T Consensus 326 ~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 326 DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 67788898887655 578999999998665 6778999999988643 47899999999999887
No 402
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.02 E-value=0.013 Score=38.01 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 102 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 102 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
+++++|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555444
No 403
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.01 E-value=0.11 Score=47.46 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
..+..+..+-...++.+++...+...-.+.|+.++.-..-|.++...|+|.+|+..++...+..|..+.+-..++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45666667777888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 007075 113 AGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 113 ~g~~~eA~~~~~~al~~~P~ 132 (619)
+|+.+ =..+-+++++..++
T Consensus 91 ~~D~~-Wr~~A~evle~~~d 109 (160)
T PF09613_consen 91 LGDPS-WRRYADEVLESGAD 109 (160)
T ss_pred cCChH-HHHHHHHHHhcCCC
Confidence 88864 22233445555443
No 404
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.00 E-value=0.013 Score=37.97 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 98 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 98 (619)
+++++|.++...|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 405
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=96.00 E-value=0.095 Score=57.98 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=90.1
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHHHCCCce-EEEeccCCCCHHHHHHHHHHHHHcCCC---CCcEEEcCCccCcH
Q 007075 357 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLE---SLRVDLLPLILLNH 429 (619)
Q Consensus 357 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~P~a~-l~l~g~~~~~~~~~~~l~~~~~~~Gi~---~~rv~f~g~~~~~~ 429 (619)
.++|.|||+.. .+.++.....+..+...|+.. +|..... .. .. + ..|+. +..|++.+|+| +.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~-~~---~-----~~~~~~~~~~nV~~~~W~P-Q~ 346 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DS-IY---F-----PEGLPNRGRGNVVLSKWAP-QN 346 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cc-hh---h-----hhcCCCCCcCceEEecCCC-cH
Confidence 57788999886 799999999999999987776 5554322 11 10 1 11332 34588889998 56
Q ss_pred HHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEecc--CCccccchhHHHHHhcCCCccc-cC--CHHHHHHHHHHhh
Q 007075 430 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLI-AK--NEDEYVQLALQLA 504 (619)
Q Consensus 430 ~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~--g~~~~~r~~~~~l~~~gl~~~v-~~--~~~~y~~~a~~L~ 504 (619)
+.+.....+..|+ ..+|-++++||+++|||+|+++ |+.+. .+.++...|..... .. +..+..+.+..+.
T Consensus 347 ~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~---Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il 420 (496)
T KOG1192|consen 347 DLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPL---NARLLVRHGGGGVLDKRDLVSEELLEAIKEIL 420 (496)
T ss_pred HHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchh---HHHHHHhCCCEEEEehhhcCcHHHHHHHHHHH
Confidence 7663333344555 2366678999999999999654 55332 24444444443322 11 2222566667777
Q ss_pred cCHHHHHHHHHHHH
Q 007075 505 SDVTALANLRMSLR 518 (619)
Q Consensus 505 ~d~~~~~~lr~~~r 518 (619)
.+++..+..++-..
T Consensus 421 ~~~~y~~~~~~l~~ 434 (496)
T KOG1192|consen 421 ENEEYKEAAKRLSE 434 (496)
T ss_pred cChHHHHHHHHHHH
Confidence 78776666555444
No 406
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=95.91 E-value=0.34 Score=52.57 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=111.2
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCCC-----HHHHHHHHHHHHH----cCCCCCc--E
Q 007075 357 FITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ----LGLESLR--V 419 (619)
Q Consensus 357 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~~-----~~~~~~l~~~~~~----~Gi~~~r--v 419 (619)
..++.++-|+ .|..++-+.++.+.|++.|+ .+|+-++.+... ..++.++.+.+.+ .|-. +. |
T Consensus 255 ~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~-~w~Pv 333 (474)
T PRK10117 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQL-GWTPL 333 (474)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCC-CceeE
Confidence 3355667888 59999999999999999998 456656554321 1344455444433 3332 21 5
Q ss_pred EEcCCccCcHHHHHhcccCcEeecCCCCCCch-hHHHhhhcCCc----EEeccCCccccchhHHHHHhcCCCccc-cCCH
Q 007075 420 DLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNE 493 (619)
Q Consensus 420 ~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~-t~~eAl~~GvP----vVt~~g~~~~~r~~~~~l~~~gl~~~v-~~~~ 493 (619)
+++.+.-.+++..++|+.+||+|-|+---|-| +.-|-.+|--| |+.+. .|++ ++..|. | .-+| ..|.
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILS--efAG--aA~~L~--~-AllVNP~d~ 406 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLS--QFAG--AANELT--S-ALIVNPYDR 406 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEe--cccc--hHHHhC--C-CeEECCCCH
Confidence 55544333788999999999999999886654 88899988553 22211 1111 233332 1 1112 3688
Q ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 494 DEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 494 ~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
++.++...+-++ .++++++--+.+++.+.. +|...|++.+-+.+..+.
T Consensus 407 ~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 407 DEVAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhh
Confidence 887776654444 566666555566665443 588999988887776653
No 407
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.82 E-value=0.078 Score=43.80 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 007075 52 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGS 115 (619)
Q Consensus 52 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~ 115 (619)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-++++.++++ -.+.-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345556666666666666666666666666666666666666665554 2333333344444443
No 408
>PRK10941 hypothetical protein; Provisional
Probab=95.78 E-value=0.061 Score=54.02 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999987654
No 409
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.11 Score=48.61 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 79 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 79 (619)
.++..+...+++++|+..++.++....+. .-+-.+||.+..++|++++|+..+......+ -.+......|.++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHc
Confidence 56788899999999999999998644332 3356789999999999999998876543311 1122345679999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 007075 80 GKMDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 80 g~~~eA~~~~~~al~~~p~~~ 100 (619)
|+-++|...|+++++..++..
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred CchHHHHHHHHHHHHccCChH
Confidence 999999999999999985543
No 410
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.70 E-value=0.25 Score=50.65 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=82.0
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHHHCCCceEEEe-ccCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCccCcHHHHHh
Q 007075 357 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHMQA 434 (619)
Q Consensus 357 ~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~l~l~-g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f-~g~~~~~~~~~~~ 434 (619)
.|.+|.-+...-.|-+.++...+-. ..+.++++- |-|..++..++++.+...++--+ +++.. ...+| .+||+++
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mp-f~eYl~l 262 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMP-FDEYLAL 262 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCC-HHHHHHH
Confidence 3444444444555555555544422 345666653 44433567888898888887554 56654 45666 6999999
Q ss_pred cccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCcc
Q 007075 435 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL 488 (619)
Q Consensus 435 ~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~ 488 (619)
++.||+..-.+.- -|--|++=.|++|+||+..... .-...+...|++=+
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~n-----p~~~~l~~~~ipVl 312 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDN-----PFWQDLKEQGIPVL 312 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCC-----hHHHHHHhCCCeEE
Confidence 9999999988865 4444889999999999975543 24566777788744
No 411
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.66 E-value=0.091 Score=44.66 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007075 39 GVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 115 (619)
Q Consensus 39 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~ 115 (619)
|.-++..|++-+|++..+..+...+++...+ ..-|.++ ++.+...+-.+...-+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if------------~~lA~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIF------------YKLAKKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHH------------HHHHHhccCchHHHHHHH---------
Confidence 4455666677777777777666666555332 2222222 233333333333333333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 116 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 116 ~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
.|+++|.++..+.|+.....+. ++..+-....++++....+
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~--la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFE--LASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHH--HHHHhhhHHHHHHHHHHHH
Confidence 3778999999999987544443 4444333334455554443
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.63 E-value=0.074 Score=39.05 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 139 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~ 139 (619)
+.++.++..+.++|+|++|..+.+.+|+++|++..+..-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 456778888888888888888888888888888766543
No 413
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.62 E-value=0.77 Score=47.76 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=103.7
Q ss_pred HHHHHHhHhCCccEEEeCCCCCCCCcchhhccCCcceeEecccCCCCCCCCCccEEEecCCCCCCCcc----CCCcc--c
Q 007075 254 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETK----QKHVE--E 327 (619)
Q Consensus 254 ~~~~~~i~~d~~Dilvdl~g~t~~~r~~~~a~r~Apvq~~~~G~p~ttg~~~~Dy~i~d~~~~p~~~~----~~~~E--~ 327 (619)
.++.+.+++.++||+|...+-.. .|....... |+ +.+.-.+.+.-....-+=++|.++.|..-. ..+.. +
T Consensus 73 ~~l~~~~~~~~pDv~is~~s~~a-~~va~~lgi--P~-I~f~D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~ 148 (335)
T PF04007_consen 73 YKLLKLIKKFKPDVAISFGSPEA-ARVAFGLGI--PS-IVFNDTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQ 148 (335)
T ss_pred HHHHHHHHhhCCCEEEecCcHHH-HHHHHHhCC--Ce-EEEecCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCC
Confidence 47889999999999985432211 122211112 22 122223222221112222344455554321 12222 3
Q ss_pred eEEcCCCc-cc----cCCCCCCCCCCCCCCCCCCCeEEEecCC----CCcCCHHHHHHHHHHHHHCCCceEEEeccCCCC
Q 007075 328 LIRLPECF-LC----YTPSPEAGPVCPTPALTNGFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCC 398 (619)
Q Consensus 328 l~~lp~~~-~~----~~p~~~~~~~~~~~~l~~~~~~f~~~~~----~~K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~ 398 (619)
+.+.++.. .. |.|.+. +....++.++..++-=+.. ..+.+..++.-..+.|.+..+.++++-...
T Consensus 149 i~~y~G~~E~ayl~~F~Pd~~---vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~--- 222 (335)
T PF04007_consen 149 IRTYNGYKELAYLHPFKPDPE---VLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE--- 222 (335)
T ss_pred EEEECCeeeEEeecCCCCChh---HHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc---
Confidence 44455411 11 444322 2222334333333322221 234444555555666667777644443221
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEe-ccCCccccchhH
Q 007075 399 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGV 477 (619)
Q Consensus 399 ~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt-~~g~~~~~r~~~ 477 (619)
..++ .++..+ +.+.+. .-+.+.++.-||+++ .+|||.+.||-.+|+|+|. .+|... + .-
T Consensus 223 -~~~~----~~~~~~-----~~i~~~---~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~-~--vd 282 (335)
T PF04007_consen 223 -DQRE----LFEKYG-----VIIPPE---PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLL-A--VD 282 (335)
T ss_pred -chhh----HHhccC-----ccccCC---CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcch-h--HH
Confidence 1111 222222 444443 235556777799988 7899999999999999996 444311 0 12
Q ss_pred HHHHhcCCCccccCCHHHHHH
Q 007075 478 SLLTKVGLKHLIAKNEDEYVQ 498 (619)
Q Consensus 478 ~~l~~~gl~~~v~~~~~~y~~ 498 (619)
..|...|+ -+-..|+++-++
T Consensus 283 ~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 283 KYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred HHHHHCCC-eEecCCHHHHHH
Confidence 44666676 223467777666
No 414
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.62 E-value=1.2 Score=46.92 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=97.5
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------C------------CCCHH---HHHHHHHH
Q 007075 25 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--------------K------------PNFSQ---SLNNLGVV 75 (619)
Q Consensus 25 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--------------~------------p~~~~---~~~~lg~~ 75 (619)
++.+|-+.+++..++.++..+|+.+.|.++.++|+-. + +.|.. +++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3458889999999999999999999999999999632 1 12222 45666788
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhh
Q 007075 76 YTVQGKMDAAAEMIEKAIAANPT-YAEAY-NNLGVLYRDAGSISLAIDAYEQCLKIDPD-----SRNAGQNRLLAMNYIN 148 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~~p~-~~~a~-~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~a~~~~~la~~~~~ 148 (619)
+.+.|-+..|+++.+-.+.++|. ++-+. +.+-....+.++++--++.++........ -+...+. .++++..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S--~aLA~~~ 190 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS--IALAYFR 190 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH--HHHHHHH
Confidence 88999999999999999999998 77544 33444445667887777777765542111 1122233 4455555
Q ss_pred cCCc---------------HHHHHHHHHHHHHHHhh
Q 007075 149 EGHD---------------DKLFEAHRDWGKRFMRL 169 (619)
Q Consensus 149 ~g~~---------------~~a~~~~~~~~~~~~~~ 169 (619)
.++. +++-+.+++....++..
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 5554 56666666655555443
No 415
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.61 E-value=0.33 Score=41.65 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007075 8 YGEMLKFDMAIVFYELAFHFNPH------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 75 (619)
Q Consensus 8 ~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 75 (619)
....|-|++|...+++|++.... ++-++..|+..+..+|+|++++....+++..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y-------------- 84 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY-------------- 84 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--------------
Confidence 34556778888888887765321 2345667777777777777777666665541
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 76 YTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~~p~~----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
|.+==+++.+. ..+.++.+..+..+|+.++|+..|+++-++
T Consensus 85 -------------FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 85 -------------FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------------HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------------HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 11111122221 223455666667777777777777766543
No 416
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.27 Score=48.09 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 007075 12 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD-AAAEMI 89 (619)
Q Consensus 12 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~-eA~~~~ 89 (619)
..-..|+...+.++.++|.+-..|.-.-.++..++ +..+-++++...++-+|.+.+.|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 34566777777777777777777666555555443 5677777888888888888888877777777777776 677778
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007075 90 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 142 (619)
Q Consensus 90 ~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~l 142 (619)
++++..+..+-.+|...-.++...+.++.-+.+..+.++.+-.+-.+|..+.+
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 88888888777788887788888888888888888888877766666665543
No 417
>PRK10941 hypothetical protein; Provisional
Probab=95.54 E-value=0.15 Score=51.20 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 109 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~ 109 (619)
...++=.+|.+.+++++|+.+.++.+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4668888999999999999999999999999999999999999999999999999999999999998876544433
No 418
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.54 E-value=0.2 Score=50.88 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCc
Q 007075 371 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGT 450 (619)
Q Consensus 371 ~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~ 450 (619)
.+.+...++.+... +.++++.|.+ ..++..++.....+ ...-+.+.|... -.+..++++.+|+++.+- + |
T Consensus 139 ~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D--s-g 208 (279)
T cd03789 139 AERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND--S-G 208 (279)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC--C-H
Confidence 34455555555544 7888888755 22333333333333 223355677754 578999999999998432 1 2
Q ss_pred hhHHHhhhcCCcEEeccCCccccchh
Q 007075 451 TTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 451 ~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
+ +-=|.++|+|+|++-|.+...+.+
T Consensus 209 ~-~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 209 P-MHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred H-HHHHHHcCCCEEEEECCCCccccC
Confidence 2 223358899999999976666543
No 419
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.26 E-value=0.29 Score=42.02 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH
Q 007075 77 TVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCL-------KIDPDSRNAG 137 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~------------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al-------~~~P~~~~a~ 137 (619)
...|-|++|...++++++.... +.-+|..|+.++..+|+|++++..-+++| +++.+....|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3445566666666666554322 23356667777777777777666666555 3455554444
Q ss_pred HHHH--HHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q 007075 138 QNRL--LAMNYINEGHDDKLFEAHRDWGKRFMRL 169 (619)
Q Consensus 138 ~~~~--la~~~~~~g~~~~a~~~~~~~~~~~~~~ 169 (619)
..-. -+..+...|..++++..++..++.+...
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 3322 3455577899999999999888776554
No 420
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=95.21 E-value=0.018 Score=53.60 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=59.3
Q ss_pred CcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCchhHHHhhhcCCcEEeccCCcc---ccchhHHHHHhcCCCcccc--
Q 007075 417 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 490 (619)
Q Consensus 417 ~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~t~~eAl~~GvPvVt~~g~~~---~~r~~~~~l~~~gl~~~v~-- 490 (619)
.+|.+.++++ ++..++..|||++ . +|+.|+.|++++|+|.|..+-... -...-+..+...|....+.
T Consensus 55 ~~v~~~~~~~---~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVD---NMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSS---SHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechh---hHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 5788888854 4677778899998 5 677899999999999887655431 1223455666667655443
Q ss_pred -CCHHHHHHHHHHhhcCHHHHHHHH
Q 007075 491 -KNEDEYVQLALQLASDVTALANLR 514 (619)
Q Consensus 491 -~~~~~y~~~a~~L~~d~~~~~~lr 514 (619)
.+++...+....+..++..+..+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 346778888888888887655443
No 421
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.20 E-value=0.84 Score=41.73 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
.+...-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++.+.+-.|..+.+...++.|++.+|+.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34455667789999999998888899999999999999999999999999999999999999999999999999988875
Q ss_pred H
Q 007075 83 D 83 (619)
Q Consensus 83 ~ 83 (619)
.
T Consensus 95 ~ 95 (160)
T PF09613_consen 95 S 95 (160)
T ss_pred H
Confidence 3
No 422
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.19 E-value=0.031 Score=34.94 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007075 102 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 132 (619)
Q Consensus 102 a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~ 132 (619)
++.++|.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665553
No 423
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.19 E-value=0.28 Score=55.00 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKA----------IAANPT----------YAEAYNNLGVLYRDAGSISLAIDAYEQCL 127 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~a----------l~~~p~----------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al 127 (619)
.+++.+.-+...++.+.|+++|+|+ +.-+|. +...|...|..+...|+.+.|+.+|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5777777777888888888888764 233443 34456667777778888888888887764
No 424
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.98 E-value=0.31 Score=51.93 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 007075 49 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYEQCL 127 (619)
Q Consensus 49 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~-~~eA~~~~~~al 127 (619)
..-...|++|+...+.+...|.+......+.+.+.+--..|.+++..+|++++.|..-+.-.+.-+. .+.|...+.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456789999999999999999988877778889999999999999999999999999888887776 899999999999
Q ss_pred HhCCCCHHHHHHH
Q 007075 128 KIDPDSRNAGQNR 140 (619)
Q Consensus 128 ~~~P~~~~a~~~~ 140 (619)
+.+|+++..+..+
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 9999999877654
No 425
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.93 E-value=0.039 Score=34.47 Aligned_cols=30 Identities=40% Similarity=0.623 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKP 63 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p 63 (619)
+++++|.++...+++++|+.+++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 426
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.91 E-value=0.038 Score=52.79 Aligned_cols=62 Identities=31% Similarity=0.557 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007075 75 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 136 (619)
Q Consensus 75 ~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a 136 (619)
...+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 34567788888888888888888888888888888888888888888888888888877544
No 427
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.90 E-value=0.26 Score=52.42 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 007075 16 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-MDAAAEMIEKAIA 94 (619)
Q Consensus 16 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~ 94 (619)
.-...|+.|+...+.+...|.+...-..+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 446689999999999999999998888888889999999999999999999999999988887776 9999999999999
Q ss_pred hCCCCHHHHHHH
Q 007075 95 ANPTYAEAYNNL 106 (619)
Q Consensus 95 ~~p~~~~a~~~L 106 (619)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999877654
No 428
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.83 E-value=1 Score=47.55 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCHHH
Q 007075 4 LGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQS 68 (619)
Q Consensus 4 lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~--~~~~al~l---------~p---~~~~~ 68 (619)
-|.-+.+.|+ -++|++.++.+++..+.+.+..+.. .. +-...|.+|+. .+-+.+.+ .| .+.+.
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v-~~-fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV-FL-FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH-HH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 3555667776 7889999999999888877543321 11 11223333332 22222222 12 23344
Q ss_pred HHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 69 LNNLG--VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 126 (619)
Q Consensus 69 ~~~lg--~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~a 126 (619)
-+.|+ ..++.+|+|.++..+-.-..+..| ++.++..+|.++....+|+||..++.+.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44444 456789999999999999999999 7999999999999999999999988643
No 429
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=94.82 E-value=0.56 Score=51.28 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=95.8
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCC--CH---HHHHHHHHHHH----HcCCCC-Cc
Q 007075 355 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFC--CD---SVRHRFLSTLE----QLGLES-LR 418 (619)
Q Consensus 355 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~--~~---~~~~~l~~~~~----~~Gi~~-~r 418 (619)
++..++.++.|+ .|..+.-+.++.+.|++.|+ .+|+-++.+.. .+ .+++++.+.+. +.|-.. .-
T Consensus 274 ~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~P 353 (474)
T PF00982_consen 274 GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTP 353 (474)
T ss_dssp T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-S
T ss_pred CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCcee
Confidence 443567777888 69999999999999999998 45554554321 11 23444444443 244331 12
Q ss_pred EEEcCC-ccCcHHHHHhcccCcEeecCCCCCC-chhHHHhhhcCCcEEeccCCccccchh--HHHHHhcCCCccc-cCCH
Q 007075 419 VDLLPL-ILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLI-AKNE 493 (619)
Q Consensus 419 v~f~g~-~~~~~~~~~~~~~~Dv~Ldt~~~~g-~~t~~eAl~~GvPvVt~~g~~~~~r~~--~~~l~~~gl~~~v-~~~~ 493 (619)
|++... ++ .++..++|+.+||+|.|+.-.| ..+..|-.+|-.+ -+|-...|..+ +..|.. |. =+| ..|.
T Consensus 354 I~~~~~~~~-~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGaa~~L~~-~a-l~VNP~d~ 427 (474)
T PF00982_consen 354 IIYIYRSLS-FEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGAAEQLSE-AA-LLVNPWDI 427 (474)
T ss_dssp EEEE-S----HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGGGGT-TT-S--EEE-TT-H
T ss_pred EEEEecCCC-HHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCHHHHcCC-cc-EEECCCCh
Confidence 555554 54 7899999999999999999866 5599999999766 11111112222 222221 10 011 3577
Q ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007075 494 DEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 541 (619)
Q Consensus 494 ~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~ 541 (619)
++.++...+-++ .++.++..-+.+++.+.. +|...|++.+-+.++
T Consensus 428 ~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~---~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 428 EEVADAIHEALTMPPEERKERHARLREYVRE---HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHHH---T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh---CCHHHHHHHHHHHhh
Confidence 777776655444 566666656666666554 578888877765543
No 430
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.82 E-value=0.56 Score=49.18 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=62.9
Q ss_pred CCCeEEEecCCC-CcC-CHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCc-EEEcCCccCcHHH
Q 007075 355 NGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHDH 431 (619)
Q Consensus 355 ~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~r-v~f~g~~~~~~~~ 431 (619)
...+++...++. .|. ..+-+...++.+.+ .+..++|.|.+. +..++..+ .+.+. ....+ +.+.|..+ -.+.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~--~~e~~~~~-~i~~~-~~~~~~~~l~g~~s-L~el 254 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPD--KDELAMVN-EIAQG-CQTPRVTSLAGKLT-LPQL 254 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCC--HHHHHHHH-HHHhh-CCCCcccccCCCCC-HHHH
Confidence 345556555443 332 33333333433333 357788877541 11222222 22222 22233 45788866 5899
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
.++++.||+++.. -+| .+==|-++|+|+|++-|.+...+.+
T Consensus 255 ~ali~~a~l~Vs~--DSG--p~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 255 AALIDHARLFIGV--DSV--PMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHhCCEEEec--CCH--HHHHHHHcCCCEEEEECCCCccccc
Confidence 9999999999832 233 2334678899999999976555554
No 431
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.76 E-value=0.076 Score=52.78 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCeEEEecCCC-CcC-CHHHHHHHHHHHHHCCCceEEEeccCCCCHHH-HHHHHHHHHHcCCCCCcEEEcCCccCcHHHH
Q 007075 356 GFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHM 432 (619)
Q Consensus 356 ~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~-~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~ 432 (619)
..++|...++. .|. ..+.+..+++.+.+.. ..+++.|.+ .. .....+.+. .++....+.+.|... -.++.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~e~~ 178 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGP----EEQEKEIADQIA-AGLQNPVINLAGKTS-LRELA 178 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SS----HHHHHHHHHHHH-TTHTTTTEEETTTS--HHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccc----hHHHHHHHHHHH-HhcccceEeecCCCC-HHHHH
Confidence 44444444433 343 3444444444444444 567777765 22 122222222 223213577888865 68999
Q ss_pred HhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 433 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 433 ~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
++++.+|+++- +-+-.+==|.++|+|+|++-|.+...+.+
T Consensus 179 ali~~a~~~I~----~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 179 ALISRADLVIG----NDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHTSSEEEE----ESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHhcCCEEEe----cCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 99999999982 11223344677899999999987655554
No 432
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.75 E-value=0.14 Score=37.52 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 68 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 68 (619)
++.+|..+..+|+|++|..+.+.++++.|++.++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3344444444444444444444444444444443
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.74 E-value=1.1 Score=46.47 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=88.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 53 ECYQMALSIKPNFSQSLNNLGVVYTVQGK------------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 120 (619)
Q Consensus 53 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~------------~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 120 (619)
.-+++.++.+|.+.++|..+....-..-. .+..+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988865543322 456688999999999999999988888888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHHHHHHh
Q 007075 121 DAYEQCLKIDPDSRNAGQNRLLAMNY-INEGHDDKLFEAHRDWGKRFMR 168 (619)
Q Consensus 121 ~~~~~al~~~P~~~~a~~~~~la~~~-~~~g~~~~a~~~~~~~~~~~~~ 168 (619)
+-+++++..+|++...|..++..... ...-.+++....+.+..+.+..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999888775443322 2333455666666555554433
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.66 E-value=0.78 Score=48.36 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---------------------c---HHHHHHHHHHHHHcCCHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHF-----NPH---------------------C---AEACNNLGVIYKDRDNLDKAV 52 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---------------------~---~~a~~~la~~~~~~g~~~~A~ 52 (619)
.+++.++..+|+++.|.++.++|+-. .|. | .-+.+.....+.+.|-+.-|.
T Consensus 44 lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAl 123 (360)
T PF04910_consen 44 LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTAL 123 (360)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHH
Confidence 57899999999999999999999742 111 1 235667777888999999999
Q ss_pred HHHHHHHhhCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCH---------
Q 007075 53 ECYQMALSIKPN-FSQS-LNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSI--------- 116 (619)
Q Consensus 53 ~~~~~al~l~p~-~~~~-~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~~~a~~~Lg~~~~~~g~~--------- 116 (619)
+..+-.++++|. ++-. .+.+-....+.++|+--+..++....... ..|..-+..+.++...++-
T Consensus 124 E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~ 203 (360)
T PF04910_consen 124 EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQS 203 (360)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccccc
Confidence 999999999998 6654 34444445678888877877776655211 1235667788888888888
Q ss_pred ------HHHHHHHHHHHHhCCC
Q 007075 117 ------SLAIDAYEQCLKIDPD 132 (619)
Q Consensus 117 ------~eA~~~~~~al~~~P~ 132 (619)
++|...+.+|+..-|.
T Consensus 204 ~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 204 GRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccchhHHHHHHHHHHHHhHH
Confidence 8999999999988774
No 435
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.63 E-value=3.3 Score=42.06 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=92.9
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----C---CC-------
Q 007075 9 GEMLKFDMAIVFYELAFHFN----PHC----AEACNNLGVIYKDRD-NLDKAVECYQMALSIK----P---NF------- 65 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~----p~~----~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~----p---~~------- 65 (619)
.+.|+++.|..++.++-... |+. ...+++.|......+ ++++|...++++.++- + ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56899999999999987644 332 457889999889999 9999999999999872 1 11
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 66 SQSLNNLGVVYTVQGKMD---AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 130 (619)
Q Consensus 66 ~~~~~~lg~~~~~~g~~~---eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 130 (619)
...+..++.+|...+.++ +|...++.+-...|+.+..+..--.++.+.++.+++.+.+.+++..-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 125677888998877754 56666667777788888877555555555889999999999988753
No 436
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.61 E-value=0.44 Score=41.95 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 65 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 65 ~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~-~~p~-~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
..+..++++.++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.|+|++++.+.+..++.+|++..+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4567788888887655 46678899999986 4443 3578889999999999999999999999999999887654
No 437
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.53 E-value=1.3 Score=49.81 Aligned_cols=123 Identities=24% Similarity=0.380 Sum_probs=95.6
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007075 2 YNLGVAYGEML-----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLG 73 (619)
Q Consensus 2 ~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg 73 (619)
+.+|.+|.+.. +++.|+.+|.++-... ++.+.+.+|.++..-. ++.+|.++|..|.+ -.+..+.++++
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la 367 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLA 367 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHH
Confidence 56888888743 6788999999987654 5678899999998765 67899999999887 56788999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 007075 74 VVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKID 130 (619)
Q Consensus 74 ~~~~~----~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~-g~~~eA~~~~~~al~~~ 130 (619)
.+|.. ..+...|..+++++.+.+ .+.+...++..+..- +++..+...+...-++.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 98865 357899999999999998 566666666665443 77777777766665553
No 438
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.53 E-value=1.1 Score=52.58 Aligned_cols=184 Identities=14% Similarity=0.038 Sum_probs=109.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHHHCCCc----eEEEeccCCCC-----HHHHHHHHHHHH----HcCCC-CCcE
Q 007075 356 GFITFGSFNNL--AKITPKVLQVWARILCAVPNS----RLVVKCKPFCC-----DSVRHRFLSTLE----QLGLE-SLRV 419 (619)
Q Consensus 356 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~a----~l~l~g~~~~~-----~~~~~~l~~~~~----~~Gi~-~~rv 419 (619)
|..++.++-|+ .|..+.=+.++.++|+++|+- +|+-+..+... ..++.++.+.+. +.|-. -.-|
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv 417 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPI 417 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 45667788999 699999999999999999985 66655544321 123444444443 23432 1136
Q ss_pred EEcCC-ccCcHHHHHhcccCcEeecCCCCCCch-hHHHhhhcCCcE--Ee----------ccCCccccchh--HHHHHhc
Q 007075 420 DLLPL-ILLNHDHMQAYSLMDISLDTFPYAGTT-TTCESLYMGVPC--VT----------MAGSVHAHNVG--VSLLTKV 483 (619)
Q Consensus 420 ~f~g~-~~~~~~~~~~~~~~Dv~Ldt~~~~g~~-t~~eAl~~GvPv--Vt----------~~g~~~~~r~~--~~~l~~~ 483 (619)
+++-+ ++ ..+..++|..|||+|.|+---|-+ +..|-.+|-.+- .. ..|-...|..+ +..|.
T Consensus 418 ~~~~~~~~-~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~-- 494 (854)
T PLN02205 418 VLIDAPLK-FYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS-- 494 (854)
T ss_pred EEEecCCC-HHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC--
Confidence 66644 44 789999999999999999886654 888988874321 00 01111112221 22221
Q ss_pred CCCccccCCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 007075 484 GLKHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 545 (619)
Q Consensus 484 gl~~~v~~~~~~y~~~a~~L~~-d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~~ 545 (619)
|.--.-..|.++.+++..+-++ .++.++.-.+.+++.+.. .|...|++.+-..++++++
T Consensus 495 ~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~---~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 495 GAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST---HDVGYWARSFLQDLERTCR 554 (854)
T ss_pred cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHH
Confidence 1111114688887776655555 444444433444444432 5788888877776666654
No 439
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=94.49 E-value=0.22 Score=52.08 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC
Q 007075 368 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 447 (619)
Q Consensus 368 K~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~ 447 (619)
++-|.+++++.++.++. .++++.+.. . .+.+++...+. ..+.+.+ +....++.||++| .
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~----~-~~~i~~~~~~~----~~~~~~~------~~~~~m~~aDlal----~ 241 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFF----K-GKDLKEIYGDI----SEFEISY------DTHKALLEAEFAF----I 241 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCC----c-HHHHHHHHhcC----CCcEEec------cHHHHHHhhhHHH----h
Confidence 55677778877776653 555665543 1 14444444322 1233433 2235678899988 6
Q ss_pred CCchhHHHhhhcCCcEEe
Q 007075 448 AGTTTTCESLYMGVPCVT 465 (619)
Q Consensus 448 ~g~~t~~eAl~~GvPvVt 465 (619)
.+||+|+|++.+|+|.|.
T Consensus 242 ~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 242 CSGTATLEAALIGTPFVL 259 (347)
T ss_pred cCcHHHHHHHHhCCCEEE
Confidence 678888899999999775
No 440
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.48 E-value=0.31 Score=43.79 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 113 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~ 113 (619)
.+......-...++.+++...+...--+.|+.++.-..-|.++...|+|.+|+..++...+-.+..+.+...++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 33444444556889999999999888899999999999999999999999999999999988888888888889998888
Q ss_pred CCHH
Q 007075 114 GSIS 117 (619)
Q Consensus 114 g~~~ 117 (619)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8754
No 441
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.25 Score=53.92 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 75 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 75 (619)
.+-|..+++..+|..+++.|+..+...|.+ +....++..||..+.+.++|.++++.|-+.+|.++-.....-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344556667777777777777777765543 44566777777777777777777777777777777666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 007075 76 YTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~ 95 (619)
....++-++|+.+..+....
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 66777777777776665544
No 442
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.44 E-value=0.054 Score=54.78 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCC
Q 007075 369 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 447 (619)
Q Consensus 369 ~~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~-Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~ 447 (619)
....+.++...+++..|+..|+++-.|........ ..+.+. +.. .++.+.... ....++..||.++ .
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~~-~~~~~~~~~----~~~~Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNLP-NVVIIDDDV----NLYELLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcCC-CeEEECCCC----CHHHHHHhCCEEE----E
Confidence 34567788888899999999999865421001111 222222 222 444444443 4456677788877 5
Q ss_pred CCchhHHHhhhcCCcEEec
Q 007075 448 AGTTTTCESLYMGVPCVTM 466 (619)
Q Consensus 448 ~g~~t~~eAl~~GvPvVt~ 466 (619)
-.+|+.+|||.+|+|||++
T Consensus 206 inStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVF 224 (269)
T ss_pred ECCHHHHHHHHcCCceEEe
Confidence 5678999999999999984
No 443
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=3.7 Score=37.95 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYT 77 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~ 77 (619)
-+.-+.+.++.++|+..|...-+-+-.. .-+....|.+..+.|+.++|+.+|..+-...|--. .+...-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3445556777888888877665543322 34667788889999999999999988776544221 24455567778
Q ss_pred HcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 78 VQGKMDAAAEMIEKA-IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 78 ~~g~~~eA~~~~~~a-l~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
..|.|++-..-.+.. -..+|-...+.-.||..-.+.|++.+|.+.|.+...
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 889888766655443 233555567788899999999999999999988876
No 444
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=2.9 Score=44.65 Aligned_cols=146 Identities=15% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------HHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPH-C--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS----------QSL 69 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~----------~~~ 69 (619)
-+|......+.++.|...|..|++.-.. + +.+..|+|..|...++-+.-.+.++ .+.|.+. ..+
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASIL 448 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHH
Confidence 4566667788999999999999886432 3 3456689999999776554433333 3444421 256
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH-HHHH
Q 007075 70 NNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y-----AEAYNNLGVLYRDAGSISLAIDAYEQCLKID---PDSRN-AGQN 139 (619)
Q Consensus 70 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~-----~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~-a~~~ 139 (619)
+..|...+.++++.||...+.+.++.... + .-.+..||.+....|+..++.+..+-++++. ||.+. .|..
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Confidence 66788888999999999999999988621 1 2245668889999999999999998888764 44432 2333
Q ss_pred HHHHHHHhhcCC
Q 007075 140 RLLAMNYINEGH 151 (619)
Q Consensus 140 ~~la~~~~~~g~ 151 (619)
-++-..|...|+
T Consensus 529 si~~~L~~a~g~ 540 (629)
T KOG2300|consen 529 SILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHhCc
Confidence 334445555555
No 445
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.17 E-value=0.93 Score=47.63 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=63.7
Q ss_pred CCeEEEecCC--CCcC-CHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCC-CCc-EEEcCCccCcHH
Q 007075 356 GFITFGSFNN--LAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 430 (619)
Q Consensus 356 ~~~~f~~~~~--~~K~-~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~-~~r-v~f~g~~~~~~~ 430 (619)
..|+|...++ ..|. .++-+...++-|.. .+.++++.|++ ..++..++..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 3455655443 2453 34445555544442 46777887755 2333333333332211 012 56777765 578
Q ss_pred HHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 431 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 431 ~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
..++++.||+++.. -+| .+==|-++|+|+|++-|.+...+.+
T Consensus 255 l~ali~~a~l~I~n--DTG--p~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIVTN--DSG--LMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEEec--CCh--HHHHHHHhCCCEEEEECCCCccccC
Confidence 99999999999821 122 2334678899999999976554443
No 446
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.12 E-value=0.65 Score=45.10 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
...+.+|.+.++.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45666777777777777777777777654
No 447
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.03 E-value=0.95 Score=42.57 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEA---- 102 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~a---- 102 (619)
-.++..+|..|.+.|+.++|+++|.++.+..... .+.+.++-.+....+++.....++.++-..-. .+++.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999988765433 24667777888888999998888888866532 33332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 103 YNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 103 ~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
...-|..+...++|.+|.+.|-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 23346677778888888888766643
No 448
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.02 E-value=0.081 Score=50.67 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=46.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 41 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 41 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 100 (619)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345667777788888888888888888888888888888888888888888888887753
No 449
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=0.16 Score=54.15 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007075 44 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 120 (619)
Q Consensus 44 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~ 120 (619)
.......|+..|.++++..|.....+.+.+.++.+. |+.-.|+...-.|++++|....+|+.|+.++..++++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 345577888999999999999999999998888764 45566777777888999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 007075 121 DAYEQCLKIDPDS 133 (619)
Q Consensus 121 ~~~~~al~~~P~~ 133 (619)
++...+....|.+
T Consensus 466 ~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 466 SCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhhcCchh
Confidence 9887776667744
No 450
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.97 E-value=2.6 Score=43.37 Aligned_cols=126 Identities=15% Similarity=0.289 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHHHCCCce--EEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 354 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 354 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~P~a~--l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
+++..++++.+--.- -.+++.....+-.-.|+.. -+|+-+|+.....++++...+.+ ...|....+ ..++
T Consensus 217 pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~----~p~i~I~~f---~~~~ 288 (400)
T COG4671 217 PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPK----RPHISIFEF---RNDF 288 (400)
T ss_pred CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhccc----CCCeEEEEh---hhhH
Confidence 677777878775532 2356666666555556655 44444555555666666655433 256777776 5688
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCc-c-ccchhHHHHHhcCCCcccc
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-H-AHNVGVSLLTKVGLKHLIA 490 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~-~-~~r~~~~~l~~~gl~~~v~ 490 (619)
..++..||+.+. -+|=||+||-|..|+|.+..+-.. . ..-+-+.-+..+|+-+.+.
T Consensus 289 ~~ll~gA~~vVS---m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~ 346 (400)
T COG4671 289 ESLLAGARLVVS---MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL 346 (400)
T ss_pred HHHHHhhheeee---cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC
Confidence 899999998872 367789999999999987654211 1 1112355677788877665
No 451
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=3.5 Score=43.98 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=102.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH--HHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQ--SLN 70 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~-~~~--~~~ 70 (619)
+..+-.-.|++.+|++......+. .|. .+..++.+|.-....+.++.|+..|..|.++-.. +.. ...
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344556689999999888777664 454 3557788888888889999999999999987443 333 446
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR----NA 136 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~----~a 136 (619)
|+|.+|...|+.+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++...... .+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 789999998876654444433 34432 34677788889999999999999999998852110 12
Q ss_pred HHHHHHHHHHhhcCCcHH
Q 007075 137 GQNRLLAMNYINEGHDDK 154 (619)
Q Consensus 137 ~~~~~la~~~~~~g~~~~ 154 (619)
..-.+++.++...|+..+
T Consensus 486 ~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHHHHHHHHHHHhcchHH
Confidence 222334555555565543
No 452
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.65 E-value=2.4 Score=44.24 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 007075 29 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------ 98 (619)
Q Consensus 29 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------ 98 (619)
......+..++.+....|+++.|..++.++...++ ..+......+.++...|+..+|+..++..+.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888999999999999999999999998653 24667788899999999999999999888871100
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007075 99 ----------------------------YAEAYNNLGVLYRDA------GSISLAIDAYEQCLKIDPDSRNAGQNR 140 (619)
Q Consensus 99 ----------------------------~~~a~~~Lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~a~~~~ 140 (619)
...++..+|...... +..++++..|+++++++|....++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 134566777777777 889999999999999999988877763
No 453
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.53 E-value=0.16 Score=34.58 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.++++||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.38 E-value=0.51 Score=45.84 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHHh----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CC----CCHHHHH
Q 007075 11 MLKFDMAIVFYELAFHF----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KP----NFSQSLN 70 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~----~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~l---------~p----~~~~~~~ 70 (619)
...+++|++.|.-|+-. ..+ -+..+..+|.+|..+++.++....+++|++. .| +.....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45688899999888753 222 2567888999999999999999999999874 12 2235778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 007075 71 NLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLG 107 (619)
Q Consensus 71 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~a~~~Lg 107 (619)
.+|.+..+.|++++|..+|.+.+...-... ..+.+++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 899999999999999999999988755443 3344443
No 455
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.30 E-value=0.23 Score=53.00 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 11 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 87 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 87 (619)
.+....|+..|.++++..|.....+.+.+.++.+. |+.-.|+.-...|++++|....+++.|+.++...+++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34577899999999999999999999999988764 567778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCH
Q 007075 88 MIEKAIAANPTYA 100 (619)
Q Consensus 88 ~~~~al~~~p~~~ 100 (619)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9999888888654
No 456
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=4.2 Score=40.12 Aligned_cols=104 Identities=14% Similarity=0.215 Sum_probs=87.2
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 007075 44 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS-LAID 121 (619)
Q Consensus 44 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~-eA~~ 121 (619)
....-..|+.+.+.++.++|.+...|...-.++..+ .+..+-++++.+.++-+|.+-..|...-.+....|+.. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 335567788889999999999999887777776554 46888899999999999999999999999999999988 8899
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHh
Q 007075 122 AYEQCLKIDPDSRNAGQNRLLAMNYI 147 (619)
Q Consensus 122 ~~~~al~~~P~~~~a~~~~~la~~~~ 147 (619)
..++++..+..+-.+|..+.-+....
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F 160 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFF 160 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHH
Confidence 99999999988888888876555443
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.22 E-value=14 Score=42.16 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=108.0
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHH
Q 007075 2 YNLGVAYG-EMLKFDMAIVFYELAFHFNP--HCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPN----FSQSLN 70 (619)
Q Consensus 2 ~~lg~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~ 70 (619)
+.+|.++. ...++++|..++++++.+.. +.. .+.+.++.++.+.+... |....+++++...+ .....+
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 56777776 68899999999999987653 332 34567788888888777 99999999987655 222223
Q ss_pred HHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC---
Q 007075 71 NLG--VVYTVQGKMDAAAEMIEKAIAAN--PTYAEA----YNNLGVLYRDAGSISLAIDAYEQCLKID------PDS--- 133 (619)
Q Consensus 71 ~lg--~~~~~~g~~~eA~~~~~~al~~~--p~~~~a----~~~Lg~~~~~~g~~~eA~~~~~~al~~~------P~~--- 133 (619)
.+- ..+...+++..|++.+++..... ..++.+ ....+.++...+..+++++..+++.... |+.
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 332 22223379999999999988876 355443 2334666777788888888888875432 221
Q ss_pred -HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q 007075 134 -RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 168 (619)
Q Consensus 134 -~~a~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~ 168 (619)
-.++...+-...++..|+.+..-...+++-+.+..
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 22333333334566777776666666555444433
No 458
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.16 E-value=0.2 Score=34.11 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 007075 33 EACNNLGVIYKDRDNLDKAVECYQMALSI 61 (619)
Q Consensus 33 ~a~~~la~~~~~~g~~~~A~~~~~~al~l 61 (619)
.++.++|.+|...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666553
No 459
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=0.97 Score=42.50 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHH----HHHHH
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQ----SLNNL 72 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p--~~~~----~~~~l 72 (619)
..+|..|.+.|++++|++.|.++.+.... -.+.+.++..+....+++.....+..++-.+-. .+.. ....-
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 57899999999999999999998875433 356788888999999999999999999987633 3333 23445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 73 GVVYTVQGKMDAAAEMIEKAIAAN 96 (619)
Q Consensus 73 g~~~~~~g~~~eA~~~~~~al~~~ 96 (619)
|..+...++|.+|...|-.+..-.
T Consensus 120 gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhchHHHHHHHHHccCcCC
Confidence 777788999999999987765443
No 460
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.92 E-value=5.4 Score=45.78 Aligned_cols=164 Identities=16% Similarity=0.074 Sum_probs=105.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHH--HHHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKP----NFSQ--SLNNL 72 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p----~~~~--~~~~l 72 (619)
.|.+....|++++|+++.+.++..-|.+ ..++..+|.+..-.|++++|..+.+.+.+... .+-. +.+..
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~ 543 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ 543 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3567778899999999999999876654 44678899999999999999999999988732 2222 34556
Q ss_pred HHHHHHcCC--HHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH-HH
Q 007075 73 GVVYTVQGK--MDAAAEMIEKA----IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQN-RL 141 (619)
Q Consensus 73 g~~~~~~g~--~~eA~~~~~~a----l~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~----~P~~~~a~~~-~~ 141 (619)
+.++..+|+ +++....+... +...|...-.....+.++...-+++.+.....+.+++ .|.....+.. ..
T Consensus 544 s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~ 623 (894)
T COG2909 544 SEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSM 623 (894)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHH
Confidence 788889994 33333333322 2223443333333333333333355555555555443 3443333322 35
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHH
Q 007075 142 LAMNYINEGHDDKLFEAHRDWGKRFM 167 (619)
Q Consensus 142 la~~~~~~g~~~~a~~~~~~~~~~~~ 167 (619)
++..+...|+.+++.....++...+.
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 78888899999999988887765543
No 461
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.91 E-value=3.3 Score=37.34 Aligned_cols=77 Identities=16% Similarity=0.019 Sum_probs=68.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 82 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 82 (619)
..-....+.+++...+...--+.|+.++...--|.++...|++.+|+..++...+-.+..+.....++.|++.+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34445788999999998888889999999999999999999999999999999998888888888899999888875
No 462
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.82 E-value=1.5 Score=52.13 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=101.1
Q ss_pred HHHHHHHcCCHHHHHH------HHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHH
Q 007075 4 LGVAYGEMLKFDMAIV------FYELAF-HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQS 68 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~------~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~ 68 (619)
.|......+.+.+|.+ .+.... .+.|.....+..++.++...+++++|+..-.++.-+ .|+....
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3445555667776666 554332 346788899999999999999999999988888654 3455668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007075 69 LNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 130 (619)
Q Consensus 69 ~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~ 130 (619)
+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++.+.|++.+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 889998889999999999999888776 45556677899999999999999999999999864
No 463
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=1.3 Score=48.29 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=88.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHH------HHHH
Q 007075 4 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNL------GVVY 76 (619)
Q Consensus 4 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~-~~al~l~p~~~~~~~~l------g~~~ 76 (619)
+...+...+....+....+.++..+|.+..++.+|+......|....+...+ +.+....|++.+....+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 3445556777888888899999999999999999999988877766666555 45899999998865555 8888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007075 77 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 114 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g 114 (619)
..+|+..++...++++..+.|.++.....+.....++-
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 88999999999999999999999776666655544433
No 464
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=92.53 E-value=1.5 Score=46.26 Aligned_cols=114 Identities=9% Similarity=-0.020 Sum_probs=64.4
Q ss_pred CCCCeEEEecCCC-CcC-CHHHHHHHHHHHHHCCCceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHH
Q 007075 354 TNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 431 (619)
Q Consensus 354 ~~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~P~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~ 431 (619)
+...+++...++. .|. .++.+...++.|.+ .+..+++.|++. +..++..++ +.+..-.+..+.+.|..+ -.+.
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~--e~e~~~~~~-i~~~~~~~~~~~l~g~~s-L~el 256 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPD--KDDLACVNE-IAQGCQTPPVTALAGKTT-FPEL 256 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCC--hHHHHHHHH-HHHhcCCCccccccCCCC-HHHH
Confidence 3445555544432 444 33444444544543 366777776542 112222222 222211223456788876 5899
Q ss_pred HHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchh
Q 007075 432 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 476 (619)
Q Consensus 432 ~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~ 476 (619)
.++++.||+++.. -+|.+- =|-++|+|+|++-|.+...+.+
T Consensus 257 ~ali~~a~l~v~n--DSGp~H--lAaA~g~P~v~lfGpt~p~~~~ 297 (352)
T PRK10422 257 GALIDHAQLFIGV--DSAPAH--IAAAVNTPLICLFGATDHIFWR 297 (352)
T ss_pred HHHHHhCCEEEec--CCHHHH--HHHHcCCCEEEEECCCCccccC
Confidence 9999999999821 233333 3557899999999977665554
No 465
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=0.15 Score=50.79 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred cHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCC--ccccchhHHHHHhcCCCccccCCHHHHHHHHHH-hh
Q 007075 428 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ-LA 504 (619)
Q Consensus 428 ~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~--~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~-L~ 504 (619)
++.|-..++.+|+.| -..||.+=.+.-.|+|||..+|. .+.--++..-..-+|+.-.....++.-.+.+++ +.
T Consensus 302 qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll 377 (412)
T COG4370 302 QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELL 377 (412)
T ss_pred HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHh
Confidence 567888888899866 45688899999999999999984 222212223334456665455556666666666 99
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 007075 505 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 544 (619)
Q Consensus 505 ~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~~~ 544 (619)
.|++.+.++|...++|+-. .+.++++.+...++|
T Consensus 378 ~dp~r~~air~nGqrRiGq------aGaa~rIAe~l~e~a 411 (412)
T COG4370 378 GDPQRLTAIRHNGQRRIGQ------AGAARRIAEELGEMA 411 (412)
T ss_pred cChHHHHHHHhcchhhccC------cchHHHHHHHHHHhc
Confidence 9999999999888887653 246677766666665
No 466
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.44 E-value=0.96 Score=44.98 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=84.4
Q ss_pred EEecCCC-CcCCHHHHHHHHHHHHHCC-CceEEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhccc
Q 007075 360 FGSFNNL-AKITPKVLQVWARILCAVP-NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 437 (619)
Q Consensus 360 f~~~~~~-~K~~~~~~~~~~~il~~~P-~a~l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~ 437 (619)
+-|+|-. .|.. ++++.+. |.+.+ +..++ +|. .++...+++++.+.. .++.+.-. ..+...++..
T Consensus 162 lI~lGGsDpk~l--t~kvl~~-L~~~~~nl~iV-~gs---~~p~l~~l~k~~~~~----~~i~~~~~---~~dma~LMke 227 (318)
T COG3980 162 LITLGGSDPKNL--TLKVLAE-LEQKNVNLHIV-VGS---SNPTLKNLRKRAEKY----PNINLYID---TNDMAELMKE 227 (318)
T ss_pred EEEccCCChhhh--HHHHHHH-hhccCeeEEEE-ecC---CCcchhHHHHHHhhC----CCeeeEec---chhHHHHHHh
Confidence 4455544 5522 4455443 33444 33333 342 224456666666664 66666544 4677888999
Q ss_pred CcEeecCCCCCCchhHHHhhhcCCc--EEeccCCccccchhHHHHHhcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHH
Q 007075 438 MDISLDTFPYAGTTTTCESLYMGVP--CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANL 513 (619)
Q Consensus 438 ~Dv~Ldt~~~~g~~t~~eAl~~GvP--vVt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~L~~d~~~~~~l 513 (619)
||.++ ..+|.|+.||+..|+| ||++..... .++-.+..+|..--. ..........+.++..|..++..+
T Consensus 228 ~d~aI----~AaGstlyEa~~lgvP~l~l~~a~NQ~---~~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l 300 (318)
T COG3980 228 ADLAI----SAAGSTLYEALLLGVPSLVLPLAENQI---ATAKEFEALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNL 300 (318)
T ss_pred cchhe----eccchHHHHHHHhcCCceEEeeeccHH---HHHHHHHhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhh
Confidence 99988 7899999999999999 555554311 234455666653111 145666777788999999887766
Q ss_pred HHHH
Q 007075 514 RMSL 517 (619)
Q Consensus 514 r~~~ 517 (619)
....
T Consensus 301 ~~~~ 304 (318)
T COG3980 301 SFGS 304 (318)
T ss_pred hhcc
Confidence 6554
No 467
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=92.33 E-value=4.9 Score=43.45 Aligned_cols=93 Identities=10% Similarity=0.211 Sum_probs=64.8
Q ss_pred CCcEEE-cCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhhcCCcEEeccCCccccchhHHHHHhcCCCccccC---
Q 007075 416 SLRVDL-LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--- 491 (619)
Q Consensus 416 ~~rv~f-~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl~~~v~~--- 491 (619)
++++++ .+... ..+....+..||+++-+-- -+++=|+.+|||+|.+.= +.=..+++..+|+++++.+
T Consensus 306 ~~~~~vi~~~~~-~~e~~~iIs~~dl~ig~Rl----Ha~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~~~~~~~~~~ 376 (426)
T PRK10017 306 PARYHVVMDELN-DLEMGKILGACELTVGTRL----HSAIISMNFGTPAIAINY----EHKSAGIMQQLGLPEMAIDIRH 376 (426)
T ss_pred ccceeEecCCCC-hHHHHHHHhhCCEEEEecc----hHHHHHHHcCCCEEEeee----hHHHHHHHHHcCCccEEechhh
Confidence 355543 33333 4688899999999884332 267889999999997664 2345678899999998542
Q ss_pred -CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 007075 492 -NEDEYVQLALQLASDVTALANLRMSLRDL 520 (619)
Q Consensus 492 -~~~~y~~~a~~L~~d~~~~~~lr~~~r~~ 520 (619)
+.++.++.+.++..|.+ ++++.++++
T Consensus 377 l~~~~Li~~v~~~~~~r~---~~~~~l~~~ 403 (426)
T PRK10017 377 LLDGSLQAMVADTLGQLP---ALNARLAEA 403 (426)
T ss_pred CCHHHHHHHHHHHHhCHH---HHHHHHHHH
Confidence 56789999888888864 444454443
No 468
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=1.4 Score=48.29 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 107 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg 107 (619)
.+.+-|.-.++..+|..+++.|+..+..-|.+ +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34566666778888999999998888775544 346778888899999999999999999999998888877777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007075 108 VLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 108 ~~~~~~g~~~eA~~~~~~al~~ 129 (619)
.+....|+.++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7788888888888888776654
No 469
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.98 E-value=16 Score=41.57 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhCCC----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcCCH
Q 007075 14 FDMAIVFYELAFHFNPH----CAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPN--FSQ----SLNNLGVVYTVQGKM 82 (619)
Q Consensus 14 ~~~A~~~~~~al~~~p~----~~~a~~~la~~~~-~~g~~~~A~~~~~~al~l~p~--~~~----~~~~lg~~~~~~g~~ 82 (619)
...|+.+++.+++..+- .+.+++.+|.++. +..++++|+.++++++.+... ..+ +...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567777777742211 3567889999876 889999999999999888643 332 345678888888887
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--HHHHHHHhhcCCc
Q 007075 83 DAAAEMIEKAIAANPT----YAEAYNNL--GVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQN--RLLAMNYINEGHD 152 (619)
Q Consensus 83 ~eA~~~~~~al~~~p~----~~~a~~~L--g~~~~~~g~~~eA~~~~~~al~~~--P~~~~a~~~--~~la~~~~~~g~~ 152 (619)
. |...++++++...+ .+...+.+ ...+...+++..|++.++...... ..++..... +..++..+..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999988665 22222222 222333379999999999998875 355544332 3335556667767
Q ss_pred HHHHHHHHHHHHH
Q 007075 153 DKLFEAHRDWGKR 165 (619)
Q Consensus 153 ~~a~~~~~~~~~~ 165 (619)
++..+..+.....
T Consensus 196 ~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 196 DDVLELLQRAIAQ 208 (608)
T ss_pred hhHHHHHHHHHHH
Confidence 7777776665443
No 470
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.71 E-value=13 Score=41.06 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=95.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAE 87 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~eA~~ 87 (619)
...|+++...-.|++++---....+.|...+......|+..-|...+.++.++ .|..+..+...+..-...|+++.|..
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKV 387 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHH
Confidence 45788899999999988777777888999998888889999999888888887 46666777777888888899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007075 88 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 121 (619)
Q Consensus 88 ~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~ 121 (619)
.|++..+..|+..++-.........+|+.+.+..
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 9999988889988888888888888888888874
No 471
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=91.67 E-value=6.6 Score=42.76 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=106.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHHHCCC----ceEEEeccCCCC--HH---HHHHHHHHHH----HcCCCC-C
Q 007075 354 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC--DS---VRHRFLSTLE----QLGLES-L 417 (619)
Q Consensus 354 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~P~----a~l~l~g~~~~~--~~---~~~~l~~~~~----~~Gi~~-~ 417 (619)
.++..++-++-|+ .|..+.-+.++.++|..+|. ++|+-++.+... +. ++..+.+.+. +.|--. .
T Consensus 279 ~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~ 358 (486)
T COG0380 279 GRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWT 358 (486)
T ss_pred cCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 3434456677888 69999999999999999987 566666554321 11 3333443333 234331 1
Q ss_pred cEEEcCCccCcHHHHHhcccCcEeecCCCCCC-chhHHHhhhcCC----cEEeccCCccccchhHHHHHh-cCCCccccC
Q 007075 418 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTK-VGLKHLIAK 491 (619)
Q Consensus 418 rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g-~~t~~eAl~~Gv----PvVt~~g~~~~~r~~~~~l~~-~gl~~~v~~ 491 (619)
=|+|+-..-++.+++++|..+|++|-|+--.| .++..|-.++-- |+|--. |++ +++.|.. +-.+ ..
T Consensus 359 Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSe---FaG--aa~~L~~AliVN---P~ 430 (486)
T COG0380 359 PVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSE---FAG--AASELRDALIVN---PW 430 (486)
T ss_pred eeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEec---ccc--chhhhccCEeEC---CC
Confidence 26666553447899999999999999988766 458888777632 222211 111 2333332 2222 24
Q ss_pred CHHHHHHHHHHh-hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 007075 492 NEDEYVQLALQL-ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 542 (619)
Q Consensus 492 ~~~~y~~~a~~L-~~d~~~~~~lr~~~r~~~~~~~~~~~~~~~~~le~~y~~ 542 (619)
|.++..+...+- -..++++.+.-+.+++.+.+ .|...|+..+......
T Consensus 431 d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~---~d~~~W~~~fl~~la~ 479 (486)
T COG0380 431 DTKEVADAIKRALTMSLEERKERHEKLLKQVLT---HDVARWANSFLDDLAQ 479 (486)
T ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHh
Confidence 555555544333 33666665555555555443 5888999887666554
No 472
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.35 E-value=6.9 Score=39.82 Aligned_cols=110 Identities=17% Similarity=0.095 Sum_probs=63.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 88 (619)
.+..+..+-+.....|++++|..+.+|..|+.- +..-..+|++.+++|++... ..++..+.....|...+|.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da~-- 266 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEAQ-- 266 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhhh--
Confidence 344556667777788888888888888877753 33346677788888776422 1112222222222222111
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007075 89 IEKAIAANPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDP 131 (619)
Q Consensus 89 ~~~al~~~p~~~~--a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 131 (619)
.....+.. ....|+.|-.++|+..||++.++...+-.|
T Consensus 267 -----~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 -----LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred -----hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11112222 234577778888888888888877766555
No 473
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.35 E-value=2.9 Score=49.39 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=73.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007075 6 VAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDR----D---NLDKAVECYQMALSIKPNFSQSLNNLGVV 75 (619)
Q Consensus 6 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~----g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 75 (619)
.++...+.|++|+..|++.-...|.. -++.+..|..+..+ + .+++|+..|++.-. .|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 56778889999999999999888765 46778888877543 2 35666666655432 34555566777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 76 YTVQGKMDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
|..+|+++|-+++|.-|++..|+.++.-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 89999999999999999999998876543
No 474
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.18 E-value=4.8 Score=35.67 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 30 HCAEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 104 (619)
Q Consensus 30 ~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 104 (619)
-.....++++.++.... +.++.+.+++..++ -.|. .-+..+.|+..+++.|+|++++.+.+..++..|++..+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34567889999887655 46678899999996 4443 3457889999999999999999999999999999887654
Q ss_pred H
Q 007075 105 N 105 (619)
Q Consensus 105 ~ 105 (619)
.
T Consensus 110 L 110 (149)
T KOG3364|consen 110 L 110 (149)
T ss_pred H
Confidence 3
No 475
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=6.1 Score=41.50 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=98.0
Q ss_pred HcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007075 10 EMLKFD-MAIVFYELAFHFNPHCAEACNNLGVIYK------------DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 76 (619)
Q Consensus 10 ~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~------------~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 76 (619)
+.|.++ ++++.-.+.+..+|+...+|+..-.++. .+.-.++-+.+...+++.+|+...+|+....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344444 5777777778888887777664333332 222456677888888899999999999999888
Q ss_pred HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007075 77 TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----SISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 145 (619)
Q Consensus 77 ~~~g~--~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g----~~~eA~~~~~~al~~~P~~~~a~~~~~la~~ 145 (619)
.+.+. +..-+...+++++.+|.+..+|...-.+..... ...+-+++..+++.-++.+-.+|.++.+.+.
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 87664 577888899999999998888776555544333 2466778888888888888888888765554
No 476
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.84 E-value=5.4 Score=42.35 Aligned_cols=127 Identities=9% Similarity=-0.114 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCA-----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 77 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 77 (619)
.-|.++.+++++.+|...|.+..+...+.+ +.+.++-...+-+++.+.-....-..-+..|..+....-.|...+
T Consensus 11 ~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 11 FQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 357889999999999999999887544432 344444444455677777777777777778888888888899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 78 VQGKMDAAAEMIEKAIAANPTY---------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 78 ~~g~~~eA~~~~~~al~~~p~~---------------~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~ 129 (619)
+.+++.+|+..+..--..-... .-.-...+.++...|++.|+...+++.+..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999998876554431111 111233578899999999999999988754
No 477
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.07 E-value=0.52 Score=47.22 Aligned_cols=86 Identities=6% Similarity=0.012 Sum_probs=73.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007075 55 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN-LGVLYRDAGSISLAIDAYEQCLKIDPDS 133 (619)
Q Consensus 55 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~-Lg~~~~~~g~~~eA~~~~~~al~~~P~~ 133 (619)
|.++....++++..|...+....+.|-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444444568888899988888888889999999999999999999999876 4556778899999999999999999999
Q ss_pred HHHHHHH
Q 007075 134 RNAGQNR 140 (619)
Q Consensus 134 ~~a~~~~ 140 (619)
+..|..+
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 9888764
No 478
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.89 E-value=1.8 Score=35.97 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~ 95 (619)
++.++|.++...|++++|+..+++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.66 E-value=1.5 Score=52.20 Aligned_cols=127 Identities=22% Similarity=0.209 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC
Q 007075 2 YNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNF 65 (619)
Q Consensus 2 ~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~~ 65 (619)
..|+..+...+++++|+..-.++.-. .|+....+.+++...+..++...|...+.++..+ .|.-
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 45788889999999999988887643 3556778889999999999999999999999875 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 66 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 66 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
.....+++.++...++++.|+.+++.|++.+.. ....+..++..+...+++..|..+.+....
T Consensus 1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 556788999999999999999999999987533 244566677777777777777766665543
No 480
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=1.5 Score=43.55 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
...++-..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 45566677888999999999999999999999999999999999999999999999999999999876543
No 481
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.40 E-value=1.8 Score=35.99 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007075 77 TVQGKMDAAAEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 131 (619)
Q Consensus 77 ~~~g~~~eA~~~~~~al~~~p~---------~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P 131 (619)
...|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455566665555555443221 235678889999999999999999999998744
No 482
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.37 E-value=1.3 Score=44.52 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007075 17 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 78 (619)
Q Consensus 17 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 78 (619)
|..+|.+|+.+.|++...|+.||.++...|+.=.|+-+|-+++-..-.++.+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998766668888898888877
No 483
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.24 E-value=2.6 Score=41.94 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007075 34 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 108 (619)
Q Consensus 34 a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~ 108 (619)
...++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666678889999999999999999999999999999999999999999999999999999998877554443
No 484
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.24 E-value=1.4 Score=44.30 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007075 51 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 112 (619)
Q Consensus 51 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~ 112 (619)
|+.+|.+|+.+.|++...++.||.++...|+.=+|+-+|-+++-.....+.+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997776678899999988877
No 485
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=15 Score=38.59 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=88.3
Q ss_pred HHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----C-CCHHHHHHHH
Q 007075 9 GEMLKFDMAIVFYELAFHF-NPH--------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----P-NFSQSLNNLG 73 (619)
Q Consensus 9 ~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-----p-~~~~~~~~lg 73 (619)
...+++.+|..+-+..+.. .-. .+..|+-+...|...++...-...+...+... . ..+...+.|-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 4457888888887766542 111 24567778888888888776666555554431 1 2233455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 74 VVYTVQGKMDAAAEMIEKAIA--ANP--TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 134 (619)
Q Consensus 74 ~~~~~~g~~~eA~~~~~~al~--~~p--~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~ 134 (619)
..|...+.|+.|-....++.- ... ..+..++.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 778888899999888877641 111 2345677899999999999999999999999999853
No 486
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.09 E-value=21 Score=38.91 Aligned_cols=147 Identities=18% Similarity=0.040 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 007075 14 FDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEM 88 (619)
Q Consensus 14 ~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~g~~~eA~~~ 88 (619)
-+++..+|++++.- ...+...++.++.--...- ++++--+.+++++.+...+. -+++++-+.-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 56778888888763 3334455555554433333 36677788888887643333 3556666666666667888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 007075 89 IEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 162 (619)
Q Consensus 89 ~~~al~~~p~~~~a~~~Lg~~-~~~~g~~~eA~~~~~~al~~~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~~~ 162 (619)
|.+|-+..-....++..-|.+ |...++.+-|...|+-.++..++.+.....++.-+.. .+++..+...+++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~--lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH--LNDDNNARALFERV 461 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCcchhHHHHHHHH
Confidence 888876644433333333332 5567899999999999999999988766654444433 34444444444433
No 487
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.05 E-value=2.2 Score=44.73 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=66.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--------CCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 39 GVIYKDRDNLDKAVECYQMALSIKP--------NFS----------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 39 a~~~~~~g~~~~A~~~~~~al~l~p--------~~~----------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 100 (619)
|..++++++|..|.--|+.|+++.. ..+ ..--.|..||..+++.+-|+...-+.+.++|.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556677888888888888877632 111 1234678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 007075 101 EAYNNLGVLYRDAGSISLAIDAY 123 (619)
Q Consensus 101 ~a~~~Lg~~~~~~g~~~eA~~~~ 123 (619)
.-|...+.++..+.+|.+|...+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888886554
No 488
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.55 E-value=0.92 Score=45.55 Aligned_cols=86 Identities=6% Similarity=-0.040 Sum_probs=72.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007075 22 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTYA 100 (619)
Q Consensus 22 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 100 (619)
.++-...++++..|...+.-....+-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|+.+
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 34444567888889888888888889999999999999999999998876 45557788999999999999999999999
Q ss_pred HHHHHHH
Q 007075 101 EAYNNLG 107 (619)
Q Consensus 101 ~a~~~Lg 107 (619)
..|+..-
T Consensus 177 ~iw~eyf 183 (435)
T COG5191 177 RIWIEYF 183 (435)
T ss_pred hHHHHHH
Confidence 8887543
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.26 E-value=7.9 Score=41.19 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q 007075 3 NLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNL--GVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVV 75 (619)
Q Consensus 3 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l--a~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~ 75 (619)
..+..+++.++|..|...++.....-|... ..+..+ |..+.+.-++++|.+++++.+...-. ....+..+..+
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 456677889999999999999887533333 234444 44456888999999999988765221 11222222222
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Q 007075 76 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------YRDAGSISLAIDAYEQCLKI 129 (619)
Q Consensus 76 ~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~------~~~~g~~~eA~~~~~~al~~ 129 (619)
......+........+. .+.+ ....++.+ -...|+|+.|+..+-+++++
T Consensus 216 ~~~~~~~~~~~~~~~~~----~~~~-~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 216 LKALESILSALEDKKQR----QKKL-YYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHhhccchhhhhcc----cccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22221111111111110 1111 22222222 23578999999999899876
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=54 Score=36.21 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=94.7
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------
Q 007075 11 MLKFDMAIVFYELAFHF------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----------------- 61 (619)
Q Consensus 11 ~g~~~~A~~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l----------------- 61 (619)
...|++|...|.-+... .|-+.+.+..++.++..+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888888764 3556788999999999999999988888888631
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 007075 62 ----KPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYR-DAGSISLAIDAYEQC-----L 127 (619)
Q Consensus 62 ----~p~~~~---~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~a~~~Lg~~~~-~~g~~~eA~~~~~~a-----l 127 (619)
.|.+-. +++..-..+.+.|-+..|.++.+-.++++|. ++.+...+-.+|. ...+|+=-++.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 233333 2333345566789999999999999999998 7766655555543 334555445544443 2
Q ss_pred HhCCCCHHHHHHHHHHHHHhhcCCc
Q 007075 128 KIDPDSRNAGQNRLLAMNYINEGHD 152 (619)
Q Consensus 128 ~~~P~~~~a~~~~~la~~~~~~g~~ 152 (619)
..-|+. .+...+++.|....+.
T Consensus 411 ~~~PN~---~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 411 SQLPNF---GYSLALARFFLRKNEE 432 (665)
T ss_pred hhcCCc---hHHHHHHHHHHhcCCh
Confidence 334543 3455677777766553
No 491
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.74 E-value=4.8 Score=32.05 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=36.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHH
Q 007075 72 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN---LGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 72 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~---Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
-|.-++.+.+.++|+..++++++..++.+..+.. +..+|.+.|+|.+.+++--+-++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777666554433 44556777777777766544443
No 492
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.68 E-value=25 Score=38.81 Aligned_cols=127 Identities=6% Similarity=-0.079 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007075 12 LKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 83 (619)
Q Consensus 12 g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 83 (619)
....+....|+..+.. ++.+...|.....-....|+++...-.|++++--.....+.|.+.+......|+.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 3344455555555542 22234456666666778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007075 84 AAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 138 (619)
Q Consensus 84 eA~~~~~~al~~~-p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~a~~ 138 (619)
-|-..+.++.+.. |+.+..+..-+......|++..|...|++..+--|+...+..
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l 404 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVL 404 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHH
Confidence 9999999888874 666778888889999999999999999999987788765443
No 493
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=86.60 E-value=45 Score=36.51 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 007075 13 KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIE 90 (619)
Q Consensus 13 ~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~ 90 (619)
+++.-.+++++++.....+ .-++.++-+.-.+..-...|...|.+|-+..-...+.+..-|.+ |+-+++..-|...|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 3666777788887754332 23455555656667778889999999987655444444444433 567899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 007075 91 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 160 (619)
Q Consensus 91 ~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~a~~~~~la~~~~~~g~~~~a~~~~~ 160 (619)
-.++..++.+..-+.....+..+++-..|...|++++.. .|+...-.+.. +..--..-|+....++.-+
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r-~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR-MLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH-HHHHHHhcccHHHHHHHHH
Confidence 999999999999888999999999999999999999987 44433322332 2222234566555444433
No 494
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.53 E-value=5.1 Score=40.37 Aligned_cols=61 Identities=34% Similarity=0.387 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007075 68 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 128 (619)
Q Consensus 68 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~Lg~~~~~~g~~~eA~~~~~~al~ 128 (619)
++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444555555566666666666666666666666666666666666666666666655533
No 495
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.51 E-value=2.3 Score=28.43 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 007075 35 CNNLGVIYKDRDNLDKAVEC 54 (619)
Q Consensus 35 ~~~la~~~~~~g~~~~A~~~ 54 (619)
++.+|..+..+|++++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444
No 496
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=86.41 E-value=12 Score=38.89 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=73.0
Q ss_pred HHHHHHCCCc--eEEEeccCCCCHHHHHHHHHHHHHcCC-CCCcEEEcCCccCcHHHHHhcccCcEeecCCCC-CCch-h
Q 007075 378 ARILCAVPNS--RLVVKCKPFCCDSVRHRFLSTLEQLGL-ESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTT-T 452 (619)
Q Consensus 378 ~~il~~~P~a--~l~l~g~~~~~~~~~~~l~~~~~~~Gi-~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~-~g~~-t 452 (619)
.+.-++.|++ ++.+.. ...- .....+...+..+-+ ...+..|.|+.+ ..++++.+ .|++| |..| |+-+ .
T Consensus 213 E~aYR~~P~~v~~~~V~N-t~~~-ke~~~F~~f~~~ldlvr~gkasfegR~~-~p~fla~~--tD~Vv-SHqWeN~lNYl 286 (364)
T PF10933_consen 213 EEAYRADPDAVEHVYVTN-TYHL-KEHPTFVNFANSLDLVRDGKASFEGRFD-FPDFLAQH--TDAVV-SHQWENPLNYL 286 (364)
T ss_pred HHHHHhChhhcceEEEec-chhh-hcCHHHHHHHHhhHHhhcCeeEEeeecC-hHHHHHhC--CCEEE-eccccchhhHH
Confidence 5566778886 344432 2110 111233333333333 235678999987 57888877 58877 5556 6655 8
Q ss_pred HHHhhhcCCcEEeccCCccccchhHHHHHhcCC--CccccCCHHHHHH-HHHHhhcCHHHHHHHHHHHHHHhhc
Q 007075 453 TCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL--KHLIAKNEDEYVQ-LALQLASDVTALANLRMSLRDLMSK 523 (619)
Q Consensus 453 ~~eAl~~GvPvVt~~g~~~~~r~~~~~l~~~gl--~~~v~~~~~~y~~-~a~~L~~d~~~~~~lr~~~r~~~~~ 523 (619)
-.||||-|=|.|= .+-+|..+|. +++ |..+=.+ ..-++.++.+.++..|++.|+-+..
T Consensus 287 Y~daLyggYPLVH----------NS~~l~d~GYYY~~f---D~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~ 347 (364)
T PF10933_consen 287 YYDALYGGYPLVH----------NSPLLKDVGYYYPDF---DAFEGARQLLRAIREHDADLDAYRARARRLLDR 347 (364)
T ss_pred HHHHHhcCCCccc----------CcchhcccCcCCCCc---cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 8999999999993 4555665565 333 3222222 2223344555566677777665543
No 497
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=7.5 Score=45.24 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 007075 103 YNNLGVLYRDAGSISLAIDAYEQC 126 (619)
Q Consensus 103 ~~~Lg~~~~~~g~~~eA~~~~~~a 126 (619)
|..|+..+..+|+|..|...-++|
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455666666666666666665555
No 498
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.29 E-value=4 Score=41.14 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007075 32 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 95 (619)
Q Consensus 32 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 95 (619)
..++..++..+...++++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999887654
No 499
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.21 E-value=0.91 Score=27.72 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007075 102 AYNNLGVLYRDAGSISLAIDAY 123 (619)
Q Consensus 102 a~~~Lg~~~~~~g~~~eA~~~~ 123 (619)
+++++|.++..+|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 500
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=86.14 E-value=2.3 Score=35.69 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=54.4
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCccCcHHHHHhcccCcEeecCCCCCCchhHHHhhh--cCCcEEec
Q 007075 389 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY--MGVPCVTM 466 (619)
Q Consensus 389 l~l~g~~~~~~~~~~~l~~~~~~~Gi~~~rv~f~g~~~~~~~~~~~~~~~Dv~Ldt~~~~g~~t~~eAl~--~GvPvVt~ 466 (619)
|++.+.|..+.-+.+++++.+++.|++. .|.= . + ..++......+|++|-+.....-..-++..+ .|+||+..
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~-~i~a-~--~-~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPL-EAAA-G--A-YGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcE-EEEE-e--e-HHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEe
Confidence 4445566566678899999999999972 2332 1 2 3567778888999998887766554444444 48999988
Q ss_pred cCCcc
Q 007075 467 AGSVH 471 (619)
Q Consensus 467 ~g~~~ 471 (619)
+...+
T Consensus 79 ~~~~Y 83 (99)
T cd05565 79 TGKQY 83 (99)
T ss_pred CHHHH
Confidence 76543
Done!