Query 007076
Match_columns 619
No_of_seqs 269 out of 1714
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 18:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 8.8E-91 1.9E-95 773.9 49.4 529 56-610 1-540 (541)
2 TIGR01314 gntK_FGGY gluconate 100.0 3.9E-87 8.4E-92 740.9 52.2 495 56-616 1-502 (505)
3 PRK15027 xylulokinase; Provisi 100.0 8.1E-87 1.8E-91 734.6 48.5 477 56-610 1-482 (484)
4 PRK04123 ribulokinase; Provisi 100.0 7.9E-85 1.7E-89 729.3 51.2 504 55-607 3-533 (548)
5 PRK00047 glpK glycerol kinase; 100.0 3.6E-85 7.7E-90 724.0 46.7 478 53-610 3-497 (498)
6 TIGR01234 L-ribulokinase L-rib 100.0 2.5E-84 5.5E-89 722.4 50.1 503 56-611 2-534 (536)
7 COG0554 GlpK Glycerol kinase [ 100.0 2.6E-84 5.7E-89 667.9 40.8 481 54-611 4-497 (499)
8 PLN02295 glycerol kinase 100.0 4.2E-84 9.1E-89 716.8 45.1 478 56-613 1-510 (512)
9 PTZ00294 glycerol kinase-like 100.0 7.2E-84 1.6E-88 714.1 46.4 480 55-612 2-503 (504)
10 PRK10939 autoinducer-2 (AI-2) 100.0 1.9E-83 4.1E-88 713.4 47.9 490 55-611 3-506 (520)
11 COG1069 AraB Ribulose kinase [ 100.0 2E-83 4.3E-88 670.6 43.6 529 54-617 2-535 (544)
12 TIGR01311 glycerol_kin glycero 100.0 3.7E-82 8E-87 699.1 45.8 473 55-609 1-492 (493)
13 TIGR01312 XylB D-xylulose kina 100.0 2.9E-81 6.2E-86 692.3 46.2 474 58-605 1-481 (481)
14 PRK10331 L-fuculokinase; Provi 100.0 1.2E-79 2.5E-84 675.3 44.5 456 55-595 2-469 (470)
15 COG1070 XylB Sugar (pentulose 100.0 3.8E-79 8.3E-84 674.1 48.1 489 52-612 1-499 (502)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 1.3E-76 2.9E-81 649.8 42.7 450 56-583 2-464 (465)
17 PLN02669 xylulokinase 100.0 1.9E-73 4.1E-78 633.1 43.2 485 54-609 7-551 (556)
18 KOG2517 Ribulose kinase and re 100.0 2.1E-67 4.5E-72 556.1 38.5 489 54-616 5-515 (516)
19 TIGR02627 rhamnulo_kin rhamnul 100.0 1.9E-67 4.1E-72 576.2 30.2 427 58-574 1-448 (454)
20 PRK10640 rhaB rhamnulokinase; 100.0 8.7E-66 1.9E-70 563.6 33.0 442 70-606 3-466 (471)
21 PF00370 FGGY_N: FGGY family o 100.0 9.4E-47 2E-51 380.1 18.4 239 56-326 1-245 (245)
22 KOG2531 Sugar (pentulose and h 100.0 5.8E-43 1.3E-47 355.3 32.1 487 55-607 9-544 (545)
23 PF02782 FGGY_C: FGGY family o 100.0 7.6E-32 1.6E-36 262.7 16.7 196 350-561 1-198 (198)
24 TIGR00241 CoA_E_activ CoA-subs 99.2 1.5E-09 3.2E-14 109.5 22.7 75 474-556 172-248 (248)
25 TIGR02259 benz_CoA_red_A benzo 98.6 3.9E-07 8.5E-12 94.6 13.6 76 476-557 351-432 (432)
26 PRK09698 D-allose kinase; Prov 98.0 4.7E-05 1E-09 79.1 12.1 77 55-143 4-81 (302)
27 COG1940 NagC Transcriptional r 98.0 5E-05 1.1E-09 79.4 12.2 77 55-140 6-82 (314)
28 PRK13311 N-acetyl-D-glucosamin 97.9 5.8E-05 1.3E-09 76.5 10.8 74 57-143 2-76 (256)
29 TIGR00744 ROK_glcA_fam ROK fam 97.9 6.2E-05 1.3E-09 78.8 11.3 87 58-162 1-88 (318)
30 PF00480 ROK: ROK family; Int 97.8 8.2E-05 1.8E-09 70.9 9.2 87 59-168 1-88 (179)
31 PRK09557 fructokinase; Reviewe 97.8 0.00013 2.9E-09 75.7 11.3 74 57-143 2-76 (301)
32 PRK13310 N-acetyl-D-glucosamin 97.8 0.00013 2.8E-09 75.9 11.0 74 57-143 2-76 (303)
33 PRK13317 pantothenate kinase; 97.6 0.0017 3.7E-08 66.3 15.3 91 464-558 173-273 (277)
34 smart00732 YqgFc Likely ribonu 97.3 0.00078 1.7E-08 57.4 7.2 61 57-136 3-63 (99)
35 PRK05082 N-acetylmannosamine k 97.3 0.0017 3.6E-08 67.1 10.6 68 57-139 3-70 (291)
36 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.00098 2.1E-08 67.8 7.1 76 477-559 211-288 (293)
37 PRK00292 glk glucokinase; Prov 97.1 0.0012 2.6E-08 69.1 8.1 68 55-139 2-70 (316)
38 COG2971 Predicted N-acetylgluc 97.1 0.0014 3E-08 66.3 7.6 72 52-129 2-74 (301)
39 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0019 4.1E-08 65.8 8.1 64 56-132 33-96 (293)
40 TIGR03286 methan_mark_15 putat 97.0 0.0024 5.1E-08 67.7 8.9 74 479-558 328-402 (404)
41 TIGR02261 benz_CoA_red_D benzo 97.0 0.0027 5.9E-08 63.7 8.5 74 478-557 183-262 (262)
42 TIGR03286 methan_mark_15 putat 96.8 0.0033 7.2E-08 66.6 8.0 19 388-406 269-287 (404)
43 PRK13410 molecular chaperone D 96.8 0.0033 7.1E-08 72.3 8.6 81 480-563 296-380 (668)
44 PF01869 BcrAD_BadFG: BadF/Bad 96.8 0.0027 5.8E-08 64.9 7.2 68 58-130 1-68 (271)
45 COG1924 Activator of 2-hydroxy 96.8 0.0036 7.8E-08 64.9 7.9 77 476-559 312-390 (396)
46 CHL00094 dnaK heat shock prote 96.8 0.0036 7.8E-08 71.7 8.6 61 505-565 318-382 (621)
47 PF05378 Hydant_A_N: Hydantoin 96.7 0.0035 7.6E-08 59.6 6.4 75 58-143 2-79 (176)
48 TIGR02261 benz_CoA_red_D benzo 96.7 0.0042 9.1E-08 62.4 7.1 67 56-131 2-69 (262)
49 PF14574 DUF4445: Domain of un 96.6 0.006 1.3E-07 65.5 8.1 76 56-131 2-91 (412)
50 PRK13321 pantothenate kinase; 96.6 0.0056 1.2E-07 62.1 7.5 63 57-131 2-64 (256)
51 PRK12408 glucokinase; Provisio 96.6 0.003 6.6E-08 66.6 5.8 68 56-143 17-91 (336)
52 PRK13318 pantothenate kinase; 96.6 0.0073 1.6E-07 61.3 8.2 63 57-131 2-64 (258)
53 PRK14101 bifunctional glucokin 96.6 0.0052 1.1E-07 70.7 7.8 67 56-139 19-85 (638)
54 TIGR02529 EutJ ethanolamine ut 96.5 0.0054 1.2E-07 61.5 6.9 67 484-555 171-238 (239)
55 PTZ00186 heat shock 70 kDa pre 96.5 0.0074 1.6E-07 69.2 8.8 80 480-562 321-404 (657)
56 COG1924 Activator of 2-hydroxy 96.5 0.0089 1.9E-07 62.0 8.0 69 50-132 130-198 (396)
57 PRK15080 ethanolamine utilizat 96.4 0.009 2E-07 60.9 7.9 70 482-556 196-266 (267)
58 PRK00290 dnaK molecular chaper 96.4 0.0083 1.8E-07 68.9 8.5 81 480-563 294-378 (627)
59 TIGR01991 HscA Fe-S protein as 96.3 0.012 2.7E-07 67.0 8.5 80 480-562 280-363 (599)
60 PRK05183 hscA chaperone protei 96.2 0.015 3.2E-07 66.6 8.9 80 480-562 296-379 (616)
61 TIGR00555 panK_eukar pantothen 96.2 0.19 4.1E-06 51.3 15.9 87 465-555 181-278 (279)
62 TIGR02350 prok_dnaK chaperone 96.2 0.012 2.6E-07 67.2 8.0 81 480-563 292-376 (595)
63 PF00012 HSP70: Hsp70 protein; 96.2 0.0091 2E-07 68.3 6.9 83 480-562 296-379 (602)
64 PRK01433 hscA chaperone protei 96.1 0.018 3.8E-07 65.5 8.7 78 480-560 278-357 (595)
65 PTZ00400 DnaK-type molecular c 95.9 0.019 4.2E-07 66.1 7.9 80 480-562 335-418 (663)
66 PRK13928 rod shape-determining 95.8 0.019 4.1E-07 60.7 6.8 80 480-559 240-323 (336)
67 PLN03184 chloroplast Hsp70; Pr 95.7 0.029 6.2E-07 64.8 8.2 79 480-562 333-416 (673)
68 PTZ00009 heat shock 70 kDa pro 95.5 0.032 6.9E-07 64.3 7.8 80 480-562 300-384 (653)
69 PRK11678 putative chaperone; P 95.4 0.073 1.6E-06 58.4 9.7 81 476-559 366-447 (450)
70 PRK13411 molecular chaperone D 95.3 0.04 8.6E-07 63.5 7.4 80 480-562 295-379 (653)
71 PRK13927 rod shape-determining 95.0 0.055 1.2E-06 57.0 6.9 80 480-559 241-324 (334)
72 PF00349 Hexokinase_1: Hexokin 94.9 0.12 2.7E-06 50.3 8.6 75 55-131 63-139 (206)
73 PRK09472 ftsA cell division pr 94.9 0.17 3.7E-06 55.2 10.6 64 481-544 290-360 (420)
74 smart00842 FtsA Cell division 94.5 0.24 5.1E-06 47.6 9.4 73 57-132 1-77 (187)
75 PRK13930 rod shape-determining 94.4 0.079 1.7E-06 55.8 6.3 79 481-559 246-328 (335)
76 TIGR02707 butyr_kinase butyrat 94.2 0.11 2.4E-06 55.0 6.8 72 57-137 2-77 (351)
77 TIGR00904 mreB cell shape dete 94.0 0.12 2.6E-06 54.5 6.9 79 481-559 245-327 (333)
78 KOG1794 N-Acetylglucosamine ki 93.9 0.31 6.6E-06 49.1 8.9 72 54-130 2-74 (336)
79 KOG0103 Molecular chaperones H 93.6 0.17 3.7E-06 56.4 7.1 81 480-560 301-382 (727)
80 PRK15080 ethanolamine utilizat 93.6 0.37 8E-06 49.1 9.2 71 54-129 23-93 (267)
81 PRK09585 anmK anhydro-N-acetyl 93.4 0.29 6.2E-06 51.9 8.2 59 480-544 260-318 (365)
82 PLN02920 pantothenate kinase 1 93.3 3.4 7.4E-05 43.9 16.0 167 349-558 167-351 (398)
83 PRK13929 rod-share determining 93.1 0.15 3.2E-06 53.8 5.7 44 513-556 278-323 (335)
84 TIGR01174 ftsA cell division p 93.0 0.42 9.2E-06 51.2 9.1 73 57-132 2-78 (371)
85 PF03702 UPF0075: Uncharacteri 92.8 0.44 9.5E-06 50.6 8.7 76 480-561 258-339 (364)
86 PRK13317 pantothenate kinase; 92.7 0.3 6.6E-06 49.9 7.0 28 55-82 2-29 (277)
87 PRK09472 ftsA cell division pr 92.4 0.49 1.1E-05 51.6 8.7 78 52-132 5-86 (420)
88 KOG0100 Molecular chaperones G 91.9 0.4 8.8E-06 50.1 6.7 53 511-563 361-415 (663)
89 TIGR00749 glk glucokinase, pro 91.7 0.29 6.4E-06 51.1 5.7 24 58-81 1-24 (316)
90 PF02543 CmcH_NodU: Carbamoylt 91.5 0.73 1.6E-05 49.1 8.5 80 480-563 134-217 (360)
91 PLN02914 hexokinase 91.5 0.63 1.4E-05 51.3 8.1 61 55-117 95-158 (490)
92 PF11104 PilM_2: Type IV pilus 91.4 0.42 9E-06 50.6 6.6 58 487-544 247-306 (340)
93 PF01869 BcrAD_BadFG: BadF/Bad 91.3 0.81 1.8E-05 46.6 8.3 69 489-557 196-271 (271)
94 PF13941 MutL: MutL protein 91.2 0.73 1.6E-05 50.3 8.2 53 57-118 2-57 (457)
95 COG2192 Predicted carbamoyl tr 91.1 0.59 1.3E-05 51.2 7.3 80 480-563 257-339 (555)
96 PLN02405 hexokinase 91.1 0.72 1.6E-05 51.0 8.1 60 56-117 96-158 (497)
97 PF03630 Fumble: Fumble ; Int 90.7 2.5 5.4E-05 44.5 11.4 165 349-556 158-339 (341)
98 PLN02596 hexokinase-like 90.7 0.81 1.8E-05 50.4 8.1 60 56-117 97-159 (490)
99 PTZ00288 glucokinase 1; Provis 90.7 1.5 3.3E-05 47.3 10.0 58 53-116 24-84 (405)
100 COG0443 DnaK Molecular chapero 90.5 0.79 1.7E-05 52.0 8.0 78 488-565 277-363 (579)
101 PLN02362 hexokinase 90.1 0.97 2.1E-05 50.1 8.1 59 56-118 96-159 (509)
102 COG2377 Predicted molecular ch 89.9 1.5 3.3E-05 45.8 8.8 56 480-541 264-320 (371)
103 COG0533 QRI7 Metal-dependent p 89.2 1.9 4.1E-05 44.9 8.8 79 57-136 3-84 (342)
104 COG4820 EutJ Ethanolamine util 89.2 1.3 2.9E-05 42.2 6.9 65 489-558 208-273 (277)
105 TIGR01174 ftsA cell division p 89.0 1.2 2.5E-05 47.8 7.6 63 480-545 281-347 (371)
106 PF06723 MreB_Mbl: MreB/Mbl pr 88.8 0.31 6.8E-06 51.0 2.9 44 514-557 275-319 (326)
107 PTZ00340 O-sialoglycoprotein e 88.5 1.7 3.7E-05 45.7 8.2 79 57-135 3-82 (345)
108 TIGR03123 one_C_unchar_1 proba 88.2 1.1 2.3E-05 46.7 6.3 31 58-88 1-31 (318)
109 PRK14878 UGMP family protein; 88.2 1.7 3.7E-05 45.6 8.0 73 482-559 215-290 (323)
110 TIGR02529 EutJ ethanolamine ut 88.2 1.4 2.9E-05 44.2 6.9 53 59-113 1-53 (239)
111 PTZ00107 hexokinase; Provision 88.1 2.7 5.8E-05 46.2 9.7 62 56-117 75-144 (464)
112 TIGR03281 methan_mark_12 putat 87.9 1.2 2.6E-05 45.4 6.1 67 488-559 242-311 (326)
113 PRK13324 pantothenate kinase; 87.7 1.8 3.9E-05 43.8 7.5 63 57-131 2-65 (258)
114 PRK13331 pantothenate kinase; 87.5 1.9 4.1E-05 43.4 7.4 56 57-131 9-64 (251)
115 TIGR01175 pilM type IV pilus a 87.1 2.8 6.1E-05 44.3 9.0 57 488-544 256-314 (348)
116 TIGR01175 pilM type IV pilus a 86.9 1.5 3.3E-05 46.3 6.9 72 55-132 3-78 (348)
117 PRK09604 UGMP family protein; 86.8 1.6 3.5E-05 46.0 6.8 78 57-134 3-83 (332)
118 COG0849 ftsA Cell division ATP 86.8 3.4 7.3E-05 44.7 9.3 66 480-545 288-353 (418)
119 PRK13326 pantothenate kinase; 86.1 2.4 5.2E-05 43.0 7.4 59 490-557 194-253 (262)
120 TIGR00143 hypF [NiFe] hydrogen 85.7 1.4 3.1E-05 51.1 6.2 75 480-558 630-711 (711)
121 COG3426 Butyrate kinase [Energ 85.7 2.6 5.5E-05 42.5 7.0 56 489-544 272-330 (358)
122 TIGR00555 panK_eukar pantothen 85.7 3.4 7.3E-05 42.3 8.2 25 57-81 2-26 (279)
123 PTZ00340 O-sialoglycoprotein e 85.5 2.3 4.9E-05 44.8 7.1 70 488-560 240-313 (345)
124 COG3734 DgoK 2-keto-3-deoxy-ga 84.7 1.4 3.1E-05 44.3 4.8 34 52-85 2-35 (306)
125 PF11104 PilM_2: Type IV pilus 83.6 3.8 8.2E-05 43.3 7.9 68 59-132 1-72 (340)
126 COG4972 PilM Tfp pilus assembl 83.5 3.1 6.8E-05 42.9 6.7 59 487-545 260-320 (354)
127 KOG0101 Molecular chaperones H 83.5 2.9 6.3E-05 47.1 7.1 56 510-565 332-389 (620)
128 PRK09605 bifunctional UGMP fam 83.2 4 8.6E-05 46.0 8.4 78 56-134 2-80 (535)
129 PF07318 DUF1464: Protein of u 83.1 2.6 5.7E-05 44.0 6.2 76 488-567 240-324 (343)
130 PRK09604 UGMP family protein; 83.0 5 0.00011 42.3 8.5 61 481-545 227-290 (332)
131 PTZ00297 pantothenate kinase; 82.6 33 0.00073 43.3 16.4 73 481-557 1364-1444(1452)
132 TIGR00671 baf pantothenate kin 82.3 4 8.8E-05 40.9 7.1 36 490-525 184-219 (243)
133 COG3894 Uncharacterized metal- 82.3 3.3 7.2E-05 44.9 6.6 91 480-577 462-559 (614)
134 TIGR03723 bact_gcp putative gl 82.1 4.5 9.8E-05 42.2 7.6 78 57-134 1-81 (314)
135 PRK03011 butyrate kinase; Prov 81.7 4.3 9.3E-05 43.2 7.4 66 489-554 271-342 (358)
136 COG4020 Uncharacterized protei 81.6 5.1 0.00011 39.7 7.1 61 56-131 4-65 (332)
137 COG0145 HyuA N-methylhydantoin 81.0 4.5 9.8E-05 46.5 7.7 74 55-141 2-78 (674)
138 PLN02666 5-oxoprolinase 81.0 5.3 0.00011 49.3 8.7 83 54-143 8-99 (1275)
139 PLN02902 pantothenate kinase 80.8 47 0.001 39.2 15.5 166 349-557 216-399 (876)
140 KOG0102 Molecular chaperones m 80.7 1.3 2.8E-05 48.4 3.0 65 501-565 339-407 (640)
141 TIGR03722 arch_KAE1 universal 80.7 4.7 0.0001 42.2 7.3 75 58-133 1-76 (322)
142 PRK13320 pantothenate kinase; 80.5 5.5 0.00012 40.0 7.3 57 490-556 182-239 (244)
143 PRK00976 hypothetical protein; 79.6 6 0.00013 41.2 7.3 67 488-560 244-312 (326)
144 PF07318 DUF1464: Protein of u 79.4 3 6.5E-05 43.6 5.1 41 59-105 1-41 (343)
145 TIGR00329 gcp_kae1 metallohydr 78.6 6.4 0.00014 40.9 7.4 77 58-134 1-80 (305)
146 PRK09605 bifunctional UGMP fam 77.2 7 0.00015 44.1 7.7 70 488-558 222-298 (535)
147 COG5026 Hexokinase [Carbohydra 77.2 4.9 0.00011 43.0 5.9 86 475-561 361-460 (466)
148 PRK10854 exopolyphosphatase; P 76.9 10 0.00023 42.4 8.9 73 56-131 12-91 (513)
149 COG1548 Predicted transcriptio 76.1 4 8.6E-05 40.6 4.6 61 492-557 259-327 (330)
150 TIGR03722 arch_KAE1 universal 76.0 8 0.00017 40.5 7.3 61 481-545 215-278 (322)
151 TIGR00329 gcp_kae1 metallohydr 75.8 6.5 0.00014 40.9 6.5 60 481-544 231-293 (305)
152 PF03652 UPF0081: Uncharacteri 74.2 6 0.00013 35.8 5.0 22 57-78 3-24 (135)
153 TIGR03723 bact_gcp putative gl 73.9 13 0.00028 38.9 8.1 61 481-545 232-295 (314)
154 KOG0104 Molecular chaperones G 73.8 7.1 0.00015 44.5 6.3 58 504-561 353-415 (902)
155 TIGR03725 bact_YeaZ universal 73.5 9.9 0.00021 36.9 6.8 64 57-133 1-64 (202)
156 PRK14878 UGMP family protein; 73.0 9.7 0.00021 39.9 7.0 75 58-134 1-76 (323)
157 KOG2707 Predicted metalloprote 72.7 8.6 0.00019 40.0 6.1 79 57-135 34-115 (405)
158 PRK03011 butyrate kinase; Prov 71.7 16 0.00034 39.0 8.2 73 57-137 4-79 (358)
159 TIGR03706 exo_poly_only exopol 71.7 12 0.00026 38.8 7.3 72 57-131 2-80 (300)
160 PF14639 YqgF: Holliday-juncti 71.0 10 0.00023 34.9 5.9 28 57-84 7-38 (150)
161 PF14450 FtsA: Cell division p 69.8 8.7 0.00019 33.8 5.0 56 57-113 1-59 (120)
162 KOG1794 N-Acetylglucosamine ki 68.9 14 0.0003 37.6 6.5 75 488-562 237-319 (336)
163 PRK11031 guanosine pentaphosph 68.7 20 0.00044 40.0 8.7 74 55-131 6-86 (496)
164 COG1214 Inactive homolog of me 68.4 11 0.00024 37.2 5.9 65 57-133 3-68 (220)
165 TIGR01319 glmL_fam conserved h 67.8 14 0.0003 40.3 6.8 50 60-118 1-52 (463)
166 COG0533 QRI7 Metal-dependent p 67.7 18 0.00039 37.8 7.3 70 489-561 239-312 (342)
167 PF00871 Acetate_kinase: Aceto 66.5 16 0.00034 39.4 7.0 55 489-543 296-353 (388)
168 COG1521 Pantothenate kinase ty 65.3 15 0.00033 36.9 6.1 61 57-131 2-62 (251)
169 COG0248 GppA Exopolyphosphatas 65.3 10 0.00022 42.1 5.3 74 56-132 4-84 (492)
170 PRK00039 ruvC Holliday junctio 65.2 41 0.00088 31.5 8.7 53 57-116 4-59 (164)
171 PRK12440 acetate kinase; Revie 64.7 9.5 0.0002 40.9 4.8 48 489-537 297-346 (397)
172 COG0068 HypF Hydrogenase matur 63.8 28 0.00061 39.7 8.4 75 480-558 665-746 (750)
173 PF02075 RuvC: Crossover junct 63.8 24 0.00053 32.4 6.8 61 57-129 1-64 (149)
174 PRK00976 hypothetical protein; 63.3 20 0.00043 37.5 6.7 20 56-75 2-21 (326)
175 PF01548 DEDD_Tnp_IS110: Trans 61.2 18 0.0004 32.6 5.5 30 57-86 1-30 (144)
176 KOG1369 Hexokinase [Carbohydra 61.0 15 0.00033 40.2 5.6 60 55-118 86-149 (474)
177 PF02685 Glucokinase: Glucokin 60.5 20 0.00042 37.5 6.2 45 514-558 256-314 (316)
178 COG4972 PilM Tfp pilus assembl 59.7 27 0.00058 36.3 6.7 61 56-120 11-74 (354)
179 COG2183 Tex Transcriptional ac 58.6 24 0.00053 40.7 6.9 65 54-131 329-394 (780)
180 PF04312 DUF460: Protein of un 58.3 31 0.00067 31.1 6.1 30 55-85 32-61 (138)
181 PRK00290 dnaK molecular chaper 57.6 8.5 0.00018 44.3 3.2 19 56-74 3-21 (627)
182 PTZ00009 heat shock 70 kDa pro 55.8 10 0.00022 43.9 3.5 23 52-74 1-23 (653)
183 PF03727 Hexokinase_2: Hexokin 55.7 19 0.00042 36.0 5.1 47 515-561 188-242 (243)
184 PRK09557 fructokinase; Reviewe 55.3 45 0.00097 34.3 7.9 67 490-557 223-299 (301)
185 PRK14101 bifunctional glucokin 54.6 45 0.00099 38.5 8.5 52 512-563 269-334 (638)
186 cd00529 RuvC_resolvase Hollida 54.5 70 0.0015 29.5 8.2 54 57-117 2-58 (154)
187 CHL00094 dnaK heat shock prote 53.9 10 0.00022 43.6 3.1 21 56-77 3-23 (621)
188 KOG1369 Hexokinase [Carbohydra 53.2 24 0.00053 38.7 5.6 89 472-562 366-469 (474)
189 COG0849 ftsA Cell division ATP 53.0 43 0.00094 36.3 7.4 73 56-131 7-83 (418)
190 PLN03184 chloroplast Hsp70; Pr 52.9 14 0.00031 42.9 4.1 20 55-74 39-58 (673)
191 PRK07058 acetate kinase; Provi 52.7 19 0.00041 38.6 4.6 48 489-537 295-344 (396)
192 PRK13410 molecular chaperone D 52.0 13 0.00028 43.2 3.5 21 56-77 3-23 (668)
193 PF07736 CM_1: Chorismate muta 51.7 23 0.00049 31.1 4.1 37 96-132 12-48 (118)
194 PRK13411 molecular chaperone D 51.4 12 0.00027 43.2 3.2 19 56-74 3-21 (653)
195 COG0443 DnaK Molecular chapero 50.9 14 0.0003 42.1 3.5 22 55-76 5-26 (579)
196 KOG1386 Nucleoside phosphatase 49.4 46 0.001 36.4 6.8 65 53-117 7-78 (501)
197 PRK11678 putative chaperone; P 49.2 13 0.00027 41.0 2.7 20 57-77 2-21 (450)
198 PTZ00107 hexokinase; Provision 48.8 92 0.002 34.4 9.3 75 487-561 372-461 (464)
199 PLN02405 hexokinase 48.1 80 0.0017 35.2 8.7 75 487-561 394-490 (497)
200 PF03309 Pan_kinase: Type III 47.9 47 0.001 32.2 6.3 20 57-76 1-20 (206)
201 PRK13310 N-acetyl-D-glucosamin 47.9 71 0.0015 32.8 8.0 48 511-558 244-301 (303)
202 TIGR03281 methan_mark_12 putat 47.4 13 0.00028 38.1 2.3 24 57-80 1-24 (326)
203 COG1077 MreB Actin-like ATPase 47.2 22 0.00048 36.8 3.9 73 481-553 249-325 (342)
204 TIGR02707 butyr_kinase butyrat 47.1 65 0.0014 34.2 7.6 57 489-545 269-328 (351)
205 COG0837 Glk Glucokinase [Carbo 46.8 62 0.0014 33.3 6.9 45 514-558 260-318 (320)
206 COG4820 EutJ Ethanolamine util 45.9 51 0.0011 31.8 5.8 29 54-82 28-56 (277)
207 PTZ00186 heat shock 70 kDa pre 45.9 19 0.00042 41.6 3.7 20 56-75 28-47 (657)
208 COG4012 Uncharacterized protei 45.9 58 0.0013 32.7 6.3 44 57-109 229-272 (342)
209 cd02185 AroH Chorismate mutase 45.5 31 0.00066 30.2 3.9 37 96-132 12-48 (117)
210 TIGR01796 CM_mono_aroH monofun 45.0 31 0.00068 30.2 3.9 37 96-132 12-48 (117)
211 PRK05082 N-acetylmannosamine k 45.0 79 0.0017 32.3 7.8 68 490-558 212-287 (291)
212 TIGR02350 prok_dnaK chaperone 45.0 16 0.00034 41.8 2.8 18 57-74 2-19 (595)
213 PF05035 DGOK: 2-keto-3-deoxy- 44.3 22 0.00048 36.5 3.5 45 512-557 242-286 (287)
214 TIGR01865 cas_Csn1 CRISPR-asso 44.0 17 0.00036 43.1 2.8 23 55-77 1-23 (805)
215 PF00012 HSP70: Hsp70 protein; 43.7 16 0.00034 41.8 2.5 18 57-74 1-18 (602)
216 PRK00109 Holliday junction res 43.4 64 0.0014 29.2 6.0 22 57-78 6-27 (138)
217 COG5012 Predicted cobalamin bi 43.0 44 0.00094 32.8 5.0 49 490-538 163-212 (227)
218 KOG1385 Nucleoside phosphatase 42.9 48 0.001 35.6 5.6 65 53-117 65-134 (453)
219 PLN02914 hexokinase 42.2 1.2E+02 0.0026 33.7 8.9 82 479-561 385-488 (490)
220 TIGR00016 ackA acetate kinase. 42.2 89 0.0019 33.7 7.7 48 490-537 304-353 (404)
221 TIGR00250 RNAse_H_YqgF RNAse H 42.2 1.1E+02 0.0023 27.5 7.1 21 58-78 1-21 (130)
222 PRK05183 hscA chaperone protei 42.1 21 0.00045 41.0 3.2 20 55-74 19-38 (616)
223 COG2441 Predicted butyrate kin 41.8 37 0.00081 34.3 4.4 42 58-105 1-43 (374)
224 PF06757 Ins_allergen_rp: Inse 40.8 1.3E+02 0.0028 28.5 7.9 90 498-617 58-152 (179)
225 PRK00180 acetate kinase A/prop 40.3 98 0.0021 33.5 7.7 48 490-537 300-349 (402)
226 COG1660 Predicted P-loop-conta 39.3 79 0.0017 31.9 6.2 80 449-538 185-270 (286)
227 PRK01433 hscA chaperone protei 39.1 35 0.00077 39.0 4.4 19 55-73 19-37 (595)
228 COG0816 Predicted endonuclease 39.1 55 0.0012 29.8 4.8 21 56-76 3-23 (141)
229 PRK12397 propionate kinase; Re 38.4 42 0.00091 36.2 4.5 47 489-536 298-346 (404)
230 TIGR00744 ROK_glcA_fam ROK fam 38.0 93 0.002 32.1 7.1 68 490-558 230-309 (318)
231 PTZ00400 DnaK-type molecular c 37.9 27 0.00059 40.5 3.3 19 56-74 42-60 (663)
232 PRK13322 pantothenate kinase; 37.6 28 0.00061 35.0 2.9 59 490-558 184-243 (246)
233 PRK12408 glucokinase; Provisio 37.1 72 0.0016 33.6 6.1 47 512-558 271-332 (336)
234 PLN02596 hexokinase-like 36.6 75 0.0016 35.3 6.2 87 473-561 382-485 (490)
235 PF07066 DUF3882: Lactococcus 36.5 2.2E+02 0.0047 26.0 7.9 54 56-118 3-62 (159)
236 PRK07157 acetate kinase; Provi 36.4 47 0.001 35.8 4.4 48 490-537 297-346 (400)
237 PRK13328 pantothenate kinase; 36.3 37 0.00081 34.3 3.6 61 490-558 192-252 (255)
238 KOG2708 Predicted metalloprote 35.2 1.1E+02 0.0025 30.1 6.4 73 58-131 5-78 (336)
239 PRK13917 plasmid segregation p 35.0 1E+02 0.0022 32.6 6.8 45 511-558 290-335 (344)
240 COG3513 Predicted CRISPR-assoc 34.3 32 0.0007 39.7 3.0 23 52-74 1-23 (1088)
241 KOG2707 Predicted metalloprote 33.9 1.1E+02 0.0023 32.3 6.4 73 489-562 278-357 (405)
242 TIGR00904 mreB cell shape dete 33.5 32 0.00069 36.1 2.7 21 58-79 5-25 (333)
243 COG2441 Predicted butyrate kin 33.2 1.1E+02 0.0023 31.2 6.0 79 488-571 254-345 (374)
244 PRK09698 D-allose kinase; Prov 32.2 1.8E+02 0.004 29.7 8.1 65 489-558 218-295 (302)
245 TIGR01991 HscA Fe-S protein as 31.8 31 0.00068 39.5 2.5 18 57-74 1-18 (599)
246 PF08735 DUF1786: Putative pyr 31.7 1.2E+02 0.0026 30.6 6.1 44 57-109 169-212 (254)
247 PRK07157 acetate kinase; Provi 31.0 1.8E+02 0.0039 31.4 7.8 26 57-82 5-31 (400)
248 PRK07058 acetate kinase; Provi 30.9 1.5E+02 0.0033 31.8 7.2 31 52-82 1-34 (396)
249 PF01968 Hydantoinase_A: Hydan 30.1 67 0.0014 33.1 4.4 65 489-555 214-283 (290)
250 TIGR00016 ackA acetate kinase. 30.0 74 0.0016 34.4 4.7 25 57-81 6-32 (404)
251 PF02601 Exonuc_VII_L: Exonucl 30.0 2.2E+02 0.0048 29.5 8.4 30 512-541 75-111 (319)
252 COG2971 Predicted N-acetylgluc 29.9 2.3E+02 0.0049 29.3 7.9 67 490-562 227-294 (301)
253 PRK12440 acetate kinase; Revie 29.7 1.8E+02 0.004 31.3 7.6 31 52-82 1-32 (397)
254 PRK13928 rod shape-determining 29.7 38 0.00083 35.5 2.5 22 58-80 6-27 (336)
255 TIGR00228 ruvC crossover junct 29.4 2.3E+02 0.005 26.3 7.2 52 57-116 1-55 (156)
256 PLN02362 hexokinase 29.0 3.2E+02 0.0068 30.7 9.6 47 515-561 444-499 (509)
257 PRK09585 anmK anhydro-N-acetyl 26.8 1E+02 0.0022 32.9 5.0 75 56-132 3-99 (365)
258 PF00871 Acetate_kinase: Aceto 26.2 49 0.0011 35.6 2.6 26 57-82 2-28 (388)
259 PRK12379 propionate/acetate ki 25.9 96 0.0021 33.4 4.7 46 490-536 295-342 (396)
260 COG0547 TrpD Anthranilate phos 25.5 4.3E+02 0.0093 27.9 9.3 81 515-597 79-165 (338)
261 PRK05416 glmZ(sRNA)-inactivati 24.8 1.9E+02 0.0042 29.7 6.6 74 460-537 192-271 (288)
262 PRK12379 propionate/acetate ki 24.7 2.8E+02 0.0061 29.9 7.9 29 54-82 4-33 (396)
263 PF00814 Peptidase_M22: Glycop 24.2 1.8E+02 0.0038 29.6 6.1 53 490-544 200-255 (268)
264 PF01150 GDA1_CD39: GDA1/CD39 23.9 71 0.0015 34.9 3.4 62 55-116 8-79 (434)
265 PRK13929 rod-share determining 23.9 62 0.0013 34.0 2.8 19 57-77 6-25 (335)
266 PF04848 Pox_A22: Poxvirus A22 23.7 1.3E+02 0.0029 27.5 4.5 24 57-80 3-26 (143)
267 PRK13328 pantothenate kinase; 23.6 3.5E+02 0.0075 27.3 8.1 24 57-80 3-26 (255)
268 PRK00292 glk glucokinase; Prov 23.3 1.9E+02 0.0041 30.0 6.3 47 512-558 253-314 (316)
269 COG1940 NagC Transcriptional r 23.1 2.8E+02 0.0061 28.5 7.6 69 490-559 226-307 (314)
270 cd00012 ACTIN Actin; An ubiqui 22.7 37 0.0008 36.1 0.9 47 513-559 290-347 (371)
271 PRK13329 pantothenate kinase; 22.6 70 0.0015 32.2 2.8 60 490-558 185-245 (249)
272 PRK13329 pantothenate kinase; 22.5 3.8E+02 0.0083 26.9 8.1 18 57-74 3-20 (249)
273 COG5350 Predicted protein tyro 22.3 2.2E+02 0.0049 26.3 5.6 67 515-608 97-163 (172)
274 TIGR03492 conserved hypothetic 22.2 2E+02 0.0043 31.0 6.4 57 486-547 67-123 (396)
275 PRK12397 propionate kinase; Re 21.3 3.4E+02 0.0074 29.4 7.7 30 52-82 1-31 (404)
276 PRK13930 rod shape-determining 21.3 65 0.0014 33.6 2.4 15 58-72 11-25 (335)
277 PF06723 MreB_Mbl: MreB/Mbl pr 21.2 57 0.0012 34.3 1.9 24 57-81 3-26 (326)
278 PRK13327 pantothenate kinase; 20.9 4.8E+02 0.01 26.1 8.3 62 490-561 178-240 (242)
279 PTZ00288 glucokinase 1; Provis 20.7 3.8E+02 0.0083 29.0 8.1 50 511-560 322-391 (405)
280 PF03702 UPF0075: Uncharacteri 20.7 3E+02 0.0065 29.4 7.2 75 56-132 2-96 (364)
281 COG1058 CinA Predicted nucleot 20.7 1.4E+02 0.003 30.2 4.4 31 513-543 61-93 (255)
282 KOG3530 FERM domain protein EH 20.5 1.1E+02 0.0024 34.2 3.9 75 522-603 102-176 (616)
283 PF11782 DUF3319: Protein of u 20.4 35 0.00075 28.2 0.1 20 8-27 43-62 (88)
284 TIGR00749 glk glucokinase, pro 20.1 1.2E+02 0.0026 31.5 4.0 40 515-554 263-316 (316)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=8.8e-91 Score=773.91 Aligned_cols=529 Identities=45% Similarity=0.774 Sum_probs=439.2
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
++||||+|||++|++|||.+|+++++.+.+++.. +.+||.||||++||+++++++++++++.+.+..+|++|||++|++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s 80 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS 80 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence 3799999999999999999999999999888764 488999999999999999999999998776677899999999865
Q ss_pred c--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccceee
Q 007076 135 L--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 212 (619)
Q Consensus 135 ~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~ 212 (619)
+ +|++|+|+....++++.+|+|+|+|.|+.++++++++...+++++||+++++.++++||+|+++|+||+|+++.+|+
T Consensus 81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l 160 (541)
T TIGR01315 81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF 160 (541)
T ss_pred ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence 4 49999999554445555799999999999999999765457889999999999999999999999999999999999
Q ss_pred echhHHHhhhcCCcccccccccccccccccchhhccccccccC---CcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076 213 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289 (619)
Q Consensus 213 ~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d---~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~ 289 (619)
+++|||.|+|||+...+..+ ++.+++|| +++++||+++|+.+||++....+||++.|+++++
T Consensus 161 ~~~dyl~~~LTG~~~~d~~~---------------as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~ 225 (541)
T TIGR01315 161 DLTDFLTWRATGKEIRSFCS---------------VVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSP 225 (541)
T ss_pred chhhhheeeeecchhHhHhH---------------HhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCC
Confidence 99999999999987533222 12334555 7999999999999999952111234444479999
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcc--cCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccc
Q 007076 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 367 (619)
Q Consensus 290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g--~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~ 367 (619)
++++|+.|++++|+++||++||||++|++|++|+++|+++ ..++| ..++ ..+++.+++|||+++..+.+.+
T Consensus 226 ~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~~----~~~~~~~~~GTs~~~~~~~~~~ 298 (541)
T TIGR01315 226 GELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVSQ----AFTRLAAVAGTSTCHMAMTKGP 298 (541)
T ss_pred CcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---cccC----CCCcEEEEecCceEEEEecCCC
Confidence 9999933999999999999999999999999999999844 23332 0000 0237889999999988888776
Q ss_pred cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCC--CccC
Q 007076 368 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP--FVAA 445 (619)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p--~~~~ 445 (619)
..+++.+.+++++..++.|+++++++++|.+++||++++....+........+.+.|+.|++.+++++.. +| .+|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 376 (541)
T TIGR01315 299 VFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISY 376 (541)
T ss_pred ccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCcccc
Confidence 6666554433234567889999999999999999998763211111111112345687777765544321 11 0113
Q ss_pred CCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC
Q 007076 446 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525 (619)
Q Consensus 446 g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s 525 (619)
+++|++|+|||.|+|+|+|||++||+|+||+.+|++.++.+++||++|||||.+|++++.|++.+.++++|+++||++||
T Consensus 377 ~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s 456 (541)
T TIGR01315 377 LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQN 456 (541)
T ss_pred CCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccC
Confidence 46899999999999999999999999999999999977777889999999999999999999888889999999999999
Q ss_pred HHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhH-HHHHHHHHHHHHHH
Q 007076 526 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELF 604 (619)
Q Consensus 526 ~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~ 604 (619)
++|+||+|||+|+||+++...|++++|||++|++++|.|++++++.+.+.+..++|+| +++++ +.|+++|++|+++|
T Consensus 457 ~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~ 534 (541)
T TIGR01315 457 PLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLA 534 (541)
T ss_pred HHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888788889999 99999 99999999999999
Q ss_pred HHHHHH
Q 007076 605 EQQVSQ 610 (619)
Q Consensus 605 ~~~~~~ 610 (619)
++++.|
T Consensus 535 ~~~~~~ 540 (541)
T TIGR01315 535 RTQQEY 540 (541)
T ss_pred HHHHhh
Confidence 999887
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=3.9e-87 Score=740.88 Aligned_cols=495 Identities=21% Similarity=0.346 Sum_probs=431.8
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (619)
|+||||+|||++|+++||.+|++++..+.+++... .+|+.||||++||+++++++++++++.+.. .+|.+|||++| +
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~ 79 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH 79 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence 58999999999999999999999999999887644 789999999999999999999999876544 67999999998 5
Q ss_pred cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076 134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 209 (619)
Q Consensus 134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 209 (619)
++ ||++|+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+|++|++++
T Consensus 80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~ 150 (505)
T TIGR01314 80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA 150 (505)
T ss_pred eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence 64 49999999 8999999999999999998764 67899999999999999999999999999999999
Q ss_pred eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076 210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289 (619)
Q Consensus 210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~ 289 (619)
+|++++|||.|+|||+.. ++.|. +++|++||+++++|++++++.+||++.+ || +++++
T Consensus 151 ~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~l~~~ 208 (505)
T TIGR01314 151 KYLEIKGYIFQRLFGTYK-IDYST--------------ASATGMFNLFELDWDKEALELTGIKESQ---LP----KLVPT 208 (505)
T ss_pred EEECHHHHHHHHHcCCce-eEhhh--------------hhhhcceeCCCCCCCHHHHHhcCCCHHH---CC----CCcCc
Confidence 999999999999999864 33332 5578899999999999999999999743 46 78999
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccc
Q 007076 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 369 (619)
Q Consensus 290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~ 369 (619)
++++|+ |++++|+++||++||||++|++|++|+++|+ |...| +++++++|||+++..+++++..
T Consensus 209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~ 272 (505)
T TIGR01314 209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIKK--------------GEAAVTIGTSGAIRTVIDKPKT 272 (505)
T ss_pred ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCCC--------------CcEEEEechhheeeeccCcCcc
Confidence 999998 9999999999999999999999999999998 55543 6899999999999888887765
Q ss_pred cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCc
Q 007076 370 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 449 (619)
Q Consensus 370 ~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 449 (619)
++... .+++...++.|+.+++++++|.+++||++++... ..+.+...+.+.|+.+++++++. |++++|
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~~---------~~g~~g 340 (505)
T TIGR01314 273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAARV---------SPGADG 340 (505)
T ss_pred CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhhC---------CCCCCc
Confidence 54322 2222233467999999999999999999987431 11112223456788888877653 357889
Q ss_pred eEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHH
Q 007076 450 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLF 528 (619)
Q Consensus 450 l~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~ 528 (619)
++|+|||.|+|+|+||+++||+|+|++.+|++.|+. ||++||+||.++++++.+++ .+.++++|+++||++||++|
T Consensus 341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w 417 (505)
T TIGR01314 341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMI---RAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW 417 (505)
T ss_pred eEEecccccCCCCCCCCCccEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHH
Confidence 999999999999999999999999999999999865 59999999999999999977 67789999999999999999
Q ss_pred HHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007076 529 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV 608 (619)
Q Consensus 529 ~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~ 608 (619)
+||+||++|+||+++...|++++|||++|++++|.+++++++ ..+.+..++|+| ++++++.|+++|++|+++|++++
T Consensus 418 ~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~~~~~~~ 494 (505)
T TIGR01314 418 RQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGTTETHTP--IEKNFEIYREISPIFINLSRSLL 494 (505)
T ss_pred HHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886 677778889999 99999999999999999999998
Q ss_pred HHHHHHHH
Q 007076 609 SQRSIMAQ 616 (619)
Q Consensus 609 ~~~~~~~~ 616 (619)
+...-+.+
T Consensus 495 ~~~~~~~~ 502 (505)
T TIGR01314 495 AEYEQIAD 502 (505)
T ss_pred HHHHHHHH
Confidence 76555443
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=8.1e-87 Score=734.58 Aligned_cols=477 Identities=25% Similarity=0.347 Sum_probs=414.7
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (619)
++||||+|||++|++|||++|++++..+.+++.. +.+|+.||||++||+++++++++++++. ..++|.+||||+| +
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~ 78 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH 78 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence 4899999999999999999999999999999865 4789999999999999999999999865 3568999999998 6
Q ss_pred cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcccee
Q 007076 134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 211 (619)
Q Consensus 134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~ 211 (619)
++ +|++|+|+ +|+++|+|.|+.++++++.+....+++.||.++++.++++||+|+++|+||+|+|+++|
T Consensus 79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~ 149 (484)
T PRK15027 79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV 149 (484)
T ss_pred ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence 64 49999999 89999999999999999987655667899999999999999999999999999999999
Q ss_pred eechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007076 212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291 (619)
Q Consensus 212 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~ 291 (619)
++++|||.|+|||+.. ++.++ +++|++||+++++||+++|+.+||+..+ || +++++++
T Consensus 150 ~~~~dyl~~~LTG~~~-~d~s~--------------as~t~l~d~~~~~w~~~ll~~~gi~~~~---lP----~v~~~~~ 207 (484)
T PRK15027 150 LLPKDYLRLRMTGEFA-SDMSD--------------AAGTMWLDVAKRDWSDVMLQACHLSRDQ---MP----ALYEGSE 207 (484)
T ss_pred cChHHHHHhhhcCCcc-ccHHH--------------hhcccccccccCCCcHHHHHHhCCCHHH---CC----CCCCCcc
Confidence 9999999999999874 34333 4567899999999999999999998743 46 6889999
Q ss_pred ccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccC
Q 007076 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 371 (619)
Q Consensus 292 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~ 371 (619)
++|+ |++++|+++||+ +|||++|++|++|+++|+ |..++ +++++++|||+++..+++++..++
T Consensus 208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~ 270 (484)
T PRK15027 208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP 270 (484)
T ss_pred cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence 9997 999999999997 699999999999999999 55543 689999999999888887765544
Q ss_pred CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceE
Q 007076 372 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 451 (619)
Q Consensus 372 ~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 451 (619)
......+++..++.|++++.+.++|.+++|+++.+.. +.|+.+.+.+++ + |++++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~------~---~~g~~gl~ 328 (484)
T PRK15027 271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ------A---DESAEPVW 328 (484)
T ss_pred hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh------C---CCCCCceE
Confidence 3211122345688899999999999999999986531 224445444433 2 36889999
Q ss_pred EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHH
Q 007076 452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 531 (619)
Q Consensus 452 flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi 531 (619)
|+|||.|+|+|+||+++||+|+|++.+|++.|+. ||++||+||.++++++.+++.|.++++|+++||++||++|+||
T Consensus 329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi 405 (484)
T PRK15027 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQM 405 (484)
T ss_pred EecccccCCCcCCCCCcceEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHH
Confidence 9999999999999999999999999999999864 5999999999999999999878889999999999999999999
Q ss_pred HHhhhCCceeecCC-CCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007076 532 HADIIGCPIILPRE-NESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 610 (619)
Q Consensus 532 ~Advlg~pV~~~~~-~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 610 (619)
+||++|+||++... .+++++|||++|++++|.+++++++. .+.+..++|+| |+++++.|+++|++|+++|++++..
T Consensus 406 ~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 406 LADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELL-PQLPLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHH-hhcCCCceECC--CHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999976654 45889999999999999999999875 44467889999 9999999999999999999998653
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=7.9e-85 Score=729.32 Aligned_cols=504 Identities=30% Similarity=0.456 Sum_probs=425.2
Q ss_pred CeEEEEEcCCcceEEEEEcC-CCCEEEEEEeecccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 007076 55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG 126 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~-~g~il~~~~~~~~~~-------~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~a 126 (619)
+|+||||+|||++|++|||. +|+++++.+.+++.+ +.+||+||||++||+++++++++++++.+..+.+|.+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a 82 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVG 82 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 68999999999999999995 999999999888742 5889999999999999999999999887776778999
Q ss_pred EEEcCc-ccc--ccCCCCeeeecCC--CCCCccceeecccccHHHHHHHHccc----hhHHhhh-CCCCCCCChHHHHHH
Q 007076 127 VGFAAT-CSL--VDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLLW 196 (619)
Q Consensus 127 Igis~~-~~~--vd~~G~pl~~~~~--~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~W 196 (619)
||||+| +++ ||++|+||.+.++ ..|..|+|+|+|.|+.++++++++.. +++++.+ |+.+++.++++||+|
T Consensus 83 Igis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~W 162 (548)
T PRK04123 83 IGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILH 162 (548)
T ss_pred EEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHH
Confidence 999998 554 4999999953322 23335999999999999999998753 3577554 999999999999999
Q ss_pred HHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCc-CCCCCHHHHHHcC-----
Q 007076 197 VKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG----- 270 (619)
Q Consensus 197 l~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~-~~~W~~~ll~~~g----- 270 (619)
|++|+|++|+++++|++++|||.|+|||+...+..+. ..+.++.+++||++ +..||+++|+.+|
T Consensus 163 l~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----------~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~ 232 (548)
T PRK04123 163 VLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----------SRCAAGHKALWHESWGGLPSADFFDALDPLLAR 232 (548)
T ss_pred HHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----------chhhcccccccccccCCCCCHHHHHHhccchhh
Confidence 9999999999999999999999999999653222211 01124567889998 5666999999996
Q ss_pred -CCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCe
Q 007076 271 -LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 349 (619)
Q Consensus 271 -i~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~ 349 (619)
|+..+ || +++++++++|. |++++|+.+||++|+||++|+||++|+++|+ |. ++ ++
T Consensus 233 ~i~~~l---lP----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~~--------------g~ 288 (548)
T PRK04123 233 GLRDKL---FT----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-EP--------------GT 288 (548)
T ss_pred hhHhhc---CC----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-CC--------------Cc
Confidence 77543 35 78899999997 9999999999999999999999999999998 55 44 57
Q ss_pred EEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 007076 350 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 429 (619)
Q Consensus 350 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 429 (619)
+++++||++++..+++++...+..+..+..+..++.|.++++++++|.+++||++.+... +..+..++.+.+.|+.+++
T Consensus 289 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 367 (548)
T PRK04123 289 LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPP-EYKDEAEARGKQLLELLTE 367 (548)
T ss_pred EEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchH-hHHHHHHhcCCcHHHHHHH
Confidence 899999999988888765443333222222245678999999999999999999987421 1111122224467888888
Q ss_pred HHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007076 430 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509 (619)
Q Consensus 430 ~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~ 509 (619)
++++. |++++|++|+|||.|+|+|+|||++||+|+|++.+|++.|+ +||++||++|.++++++.|++.
T Consensus 368 ~a~~~---------~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~~ 435 (548)
T PRK04123 368 AAAKQ---------PPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQ 435 (548)
T ss_pred HHHhc---------CCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 77653 36889999999999999999999999999999999999986 5699999999999999999988
Q ss_pred CCCcCEEEEecCC-cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhh-cCCeEEcCCCCh
Q 007076 510 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKDP 587 (619)
Q Consensus 510 g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~ 587 (619)
+.++++|+++||+ +||++|+||+||+||+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+| ++
T Consensus 436 g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~~ 513 (548)
T PRK04123 436 GVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQP--DP 513 (548)
T ss_pred CCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEec--CH
Confidence 8888999999999 99999999999999999999999999999999999999999999999877775 55678999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007076 588 KVKKYHDAKYLIFRELFEQQ 607 (619)
Q Consensus 588 ~~~~~y~~~y~~y~~l~~~~ 607 (619)
+.++.|+++|++|+++|+.+
T Consensus 514 ~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 514 ENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887
No 5
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=3.6e-85 Score=723.99 Aligned_cols=478 Identities=20% Similarity=0.325 Sum_probs=408.6
Q ss_pred CCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 53 ~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+++|+||||+|||++|+++||.+|++++..+++++.. +.+||+||||++||+++++++++++++.+..+++|.+|||++
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~ 82 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN 82 (498)
T ss_pred ccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence 3479999999999999999999999999999988764 488999999999999999999999988777778899999999
Q ss_pred c-ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 007076 132 T-CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW 205 (619)
Q Consensus 132 ~-~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~ 205 (619)
| +++ ||++ |+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|
T Consensus 83 ~~~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~ 153 (498)
T PRK00047 83 QRETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGAR 153 (498)
T ss_pred CcceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHH
Confidence 8 554 4965 9999 8999999999999999998653 4589999999999999999999999999997
Q ss_pred hccc----eeeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccccc
Q 007076 206 SMVF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280 (619)
Q Consensus 206 ~~~~----~~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp 280 (619)
+++. +|++++|||.|+|||.. ..++.|+ +++|++||+++++||+++|+.+|||+.+ ||
T Consensus 154 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP 216 (498)
T PRK00047 154 ERAEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------------ASRTMLFNIHTLDWDDELLELLDIPRSM---LP 216 (498)
T ss_pred HHHhcCCeEEeChHHhHhhhhcCCCeeEeechH--------------HhhhhccccccCccCHHHHHhcCCCHHH---CC
Confidence 7765 47889999999999752 3345443 4567899999999999999999999743 36
Q ss_pred ccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEeccccee
Q 007076 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCH 360 (619)
Q Consensus 281 ~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~ 360 (619)
+++++++++|. |+++ +++.+||||++|++|++|+++|+ |...+ +++.+++|||+++
T Consensus 217 ----~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~~--------------g~~~~~~GTs~~~ 272 (498)
T PRK00047 217 ----EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFEP--------------GMAKNTYGTGCFM 272 (498)
T ss_pred ----CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCCC--------------CceEEeeccceEE
Confidence 68899999997 9887 67779999999999999999998 55543 5899999999986
Q ss_pred eeee-ccccccCCc-cccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhh
Q 007076 361 MAVS-RNKLFIPGV-WGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH 436 (619)
Q Consensus 361 ~~~~-~~~~~~~~~-~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 436 (619)
...+ ++|..++.. ...+. +..++ .|+++++++++|.+++|++++++.. ..++.++++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~--- 336 (498)
T PRK00047 273 LMNTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARK--- 336 (498)
T ss_pred EEecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhc---
Confidence 6666 455554432 11122 22344 6999999999999999999987421 113344444433
Q ss_pred ccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCE
Q 007076 437 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDT 515 (619)
Q Consensus 437 ~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~ 515 (619)
+ ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+. ||++|||||.+|++++.|++ .|.++++
T Consensus 337 ---~----~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~r~~~e~l~~~~g~~~~~ 406 (498)
T PRK00047 337 ---V----EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHII---RATLESIAYQTRDVLDAMQADSGIRLKE 406 (498)
T ss_pred ---C----CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 1 26789999999999999999999999999999999999865 59999999999999999986 4778999
Q ss_pred EEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076 516 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 595 (619)
Q Consensus 516 I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~ 595 (619)
|+++||++||++|+||+||+||+||+++...|++++|||++|++++|.|++++++ ..+.+..++|+| ++++++ |++
T Consensus 407 i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~ 482 (498)
T PRK00047 407 LRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEP--QMDEEE-REK 482 (498)
T ss_pred EEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECC--CCCHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999987 667678899999 889887 999
Q ss_pred HHHHHHHHHHHHHHH
Q 007076 596 KYLIFRELFEQQVSQ 610 (619)
Q Consensus 596 ~y~~y~~l~~~~~~~ 610 (619)
+|++|+++|+++..|
T Consensus 483 ~~~~~~~~~~~~~~~ 497 (498)
T PRK00047 483 LYAGWKKAVKRTLAW 497 (498)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987754
No 6
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=2.5e-84 Score=722.44 Aligned_cols=503 Identities=29% Similarity=0.434 Sum_probs=420.4
Q ss_pred eEEEEEcCCcceEEEEEc-CCCCEEEEEEeeccc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 007076 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE 122 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~------~~~------~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~ 122 (619)
|+||||+|||++|++||| .+|++++..+.++++ ++. +||+||||++||+++++++++++++.+..++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 699999999999999999 899999999988873 233 7999999999999999999999998776677
Q ss_pred CEEEEEEcCc-cccc--cCCCCeeeecCC--CCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHH
Q 007076 123 EVKGVGFAAT-CSLV--DADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK 193 (619)
Q Consensus 123 ~I~aIgis~~-~~~v--d~~G~pl~~~~~--~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k 193 (619)
+|++||+|+| +++| |++|+||++..+ ..+..++|+|+|.|+.++++++++.. ++++++||+++++.++++|
T Consensus 82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k 161 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK 161 (536)
T ss_pred HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence 8999999999 6654 999999942000 00011299999999999999998753 5678899999999999999
Q ss_pred HHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCC--
Q 007076 194 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL-- 271 (619)
Q Consensus 194 l~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi-- 271 (619)
|+|+++|+||+|+++.+|++++|||.|+|||+... +.++ ++.++++|...+.||+++|+.+|+
T Consensus 162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~-d~s~--------------a~~~~l~~~~w~~~~~~~l~~~g~~~ 226 (536)
T TIGR01234 162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIRR-GRCT--------------AGYKALWHESWGYPSASFFDELNPIL 226 (536)
T ss_pred HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCccc-cchh--------------cccceeccccccCCCHHHHHHhcchh
Confidence 99999999999999999999999999999998753 3332 223445555445559999999996
Q ss_pred ----CccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhccc
Q 007076 272 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 347 (619)
Q Consensus 272 ----~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~ 347 (619)
|+.+ +| +++++++++|+ |++++|+++||++|+||++|++|++|+++|+ |..++
T Consensus 227 ~~~lp~~~---~p----~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~-------------- 283 (536)
T TIGR01234 227 NRHLPDKL---FT----DIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQP-------------- 283 (536)
T ss_pred hhhhhhhc---CC----ceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-ccccC--------------
Confidence 4332 24 78999999997 9999999999999999999999999999998 55543
Q ss_pred CeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHH
Q 007076 348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 427 (619)
Q Consensus 348 ~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l 427 (619)
+++.+++|||.++..+.+++...+..+..+..+..++.|.++++++++|.+++||++++... ++.......+.+.|+.|
T Consensus 284 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~l 362 (536)
T TIGR01234 284 GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPP-ELKTEANASQKQLHEAL 362 (536)
T ss_pred CcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcch-HHHHHHHhcCCCHHHHH
Confidence 68999999999987777654433332111111234678999999999999999999987422 12111222234568888
Q ss_pred HHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076 428 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 507 (619)
Q Consensus 428 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~ 507 (619)
++.+++. |++++||+|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|+
T Consensus 363 ~~~a~~~---------p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~ 430 (536)
T TIGR01234 363 SEAAAKQ---------PSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFT 430 (536)
T ss_pred HHHHHhC---------CCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8776642 36899999999999999999999999999999999999886 56999999999999999999
Q ss_pred hCCCCcCEEEEecCC-cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhh-cCCeEEcCCC
Q 007076 508 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSK 585 (619)
Q Consensus 508 ~~g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~ 585 (619)
+.|.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|
T Consensus 431 ~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P-- 508 (536)
T TIGR01234 431 DSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTP-- 508 (536)
T ss_pred hcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECC--
Confidence 888889999999999 99999999999999999999999999999999999999999999999877776 56889999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007076 586 DPKVKKYHDAKYLIFRELFEQQVSQR 611 (619)
Q Consensus 586 ~~~~~~~y~~~y~~y~~l~~~~~~~~ 611 (619)
++++++.|+++|++|+++|+++-.|.
T Consensus 509 ~~~~~~~y~~~y~~y~~l~~~~~~~~ 534 (536)
T TIGR01234 509 CSENAQRYEQLYARYQELAMSFGQYN 534 (536)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987653
No 7
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=2.6e-84 Score=667.88 Aligned_cols=481 Identities=23% Similarity=0.375 Sum_probs=403.7
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecc-cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~-~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
++|+++||.||||+|+++||.+|++++..+++++ ++|+|||+||||.++|..+..++++++.++++.+.+|.+|||+.|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 4799999999999999999999999999999995 567999999999999999999999999999999999999999999
Q ss_pred -cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076 133 -CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 206 (619)
Q Consensus 133 -~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 206 (619)
.. +||++ |+|+ +|+|.|+|+|+.+.|++|++.. +.+.++||+.+.|+|+..|++|+.+|.|.+.+
T Consensus 84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~ 154 (499)
T COG0554 84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE 154 (499)
T ss_pred ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence 33 45876 9999 8999999999999999999884 66788899999999999999999999998877
Q ss_pred cc----ceeeechhHHHhhhcCCcc-cccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076 207 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 281 (619)
Q Consensus 207 ~~----~~~~~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~ 281 (619)
|+ ..|+++++||.|+|||... .+|+|+ ||+|+|||+++.+||+++|+.||||+.++ |
T Consensus 155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sN--------------ASRT~L~ni~~l~WD~elL~il~Ip~~~L---P- 216 (499)
T COG0554 155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYSN--------------ASRTMLFNIHSLEWDDELLELLGIPRSML---P- 216 (499)
T ss_pred HhhcCCeEEecchhhheeeccCCceeccccch--------------hHHHhcccccccCCCHHHHHHhCCChHhC---c-
Confidence 76 5799999999999999653 566664 67899999999999999999999998765 6
Q ss_pred cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076 282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 361 (619)
Q Consensus 282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~ 361 (619)
++.++.++.|. ... -.+...+||....||||||++|.. +.+|| +.|+|||||++ +.+++|+-.+
T Consensus 217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq~-c~~pG---~~K~TYGTG~F-~l~ntG~~~~-- 280 (499)
T COG0554 217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQG-CFEPG---MAKNTYGTGCF-LLMNTGEKPV-- 280 (499)
T ss_pred ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhcc-cCCcC---cccccccccee-eeeccCCccc--
Confidence 56777788885 322 234467999999999999999994 56687 89999999987 5567776422
Q ss_pred eeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCC
Q 007076 362 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP 441 (619)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 441 (619)
.++...+..-.|. ...+-.|.+||.+..+|.+++||+|.+.- + +.....+.++++.
T Consensus 281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~----i--------~~a~~~e~~A~~~------- 336 (499)
T COG0554 281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGL----I--------DDASDSEELAESV------- 336 (499)
T ss_pred -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCc----c--------CchhHHHHHHhcc-------
Confidence 1222111111221 11234799999999999999999996532 1 1122333444432
Q ss_pred CccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007076 442 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG 520 (619)
Q Consensus 442 ~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~G 520 (619)
..++|++|+|.|.|.++||||+++||.|+||+..|+++|++| |++|||||+.+++++.|++ .+.++++++|.|
T Consensus 337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~R---A~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG 410 (499)
T COG0554 337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG 410 (499)
T ss_pred ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence 246899999999999999999999999999999999999875 9999999999999999987 566899999999
Q ss_pred CCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHH
Q 007076 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF 600 (619)
Q Consensus 521 G~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y 600 (619)
|+++|+++||++||++|.||+++...|.+|+|||++|+.++|+|+|.+|.. .....++.|+|.++.+.+ +++|..|
T Consensus 411 G~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~~~~r---~~~y~~W 486 (499)
T COG0554 411 GASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMDEEER---EELYAGW 486 (499)
T ss_pred ccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCCHHHH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 444678899998765443 6788899
Q ss_pred HHHHHHHHHHH
Q 007076 601 RELFEQQVSQR 611 (619)
Q Consensus 601 ~~l~~~~~~~~ 611 (619)
++..++...|+
T Consensus 487 ~~AV~rs~~~~ 497 (499)
T COG0554 487 KKAVKRSLGWR 497 (499)
T ss_pred HHHHHHHhccc
Confidence 98777766554
No 8
>PLN02295 glycerol kinase
Probab=100.00 E-value=4.2e-84 Score=716.83 Aligned_cols=478 Identities=19% Similarity=0.313 Sum_probs=404.6
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEEEc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA 130 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~----I~aIgis 130 (619)
|+||||+|||++|++|||.+|++++..+.+++.. +.+||+||||++||+++++++++++++.+..+++ |.+||+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 5899999999999999999999999999999864 4899999999999999999999999987766666 7999999
Q ss_pred Cc-ccc--c-cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHHHHHHHHhCc
Q 007076 131 AT-CSL--V-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ 202 (619)
Q Consensus 131 ~~-~~~--v-d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~p 202 (619)
+| +++ | |++|+|+ +|+|+|+|.|+.++++++++.. +.++++||+++++.++++||+||++|+|
T Consensus 81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 151 (512)
T PLN02295 81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD 151 (512)
T ss_pred cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence 98 654 5 5789999 8999999999999999998752 2456899999999999999999999999
Q ss_pred hhHhc----cceeeechhHHHhhhcCCc----ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcc
Q 007076 203 ESWSM----VFRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 274 (619)
Q Consensus 203 e~~~~----~~~~~~~~dyl~~~LTG~~----~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~ 274 (619)
|+|++ +.+|++++|||.|+|||+. ..++.|+ +++|++||+++++||+++|+.+||+..
T Consensus 152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------------As~t~l~D~~~~~W~~ell~~~gi~~~ 217 (512)
T PLN02295 152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------------ASRTMLMNLKTLDWDKPTLEALGIPAE 217 (512)
T ss_pred HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------------hHHhhccCcccCcCCHHHHHHcCCCHH
Confidence 99955 5589999999999999942 2345543 557789999999999999999999975
Q ss_pred ccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEe
Q 007076 275 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC 354 (619)
Q Consensus 275 l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~ 354 (619)
+ || +++++++++|. |++++++ +||||++|++|++|+++|+ |+ .+ +++.+++
T Consensus 218 ~---lP----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~~--------------g~~~~~~ 268 (512)
T PLN02295 218 I---LP----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-RP--------------GEAKSTY 268 (512)
T ss_pred H---CC----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-CC--------------CCeEEEE
Confidence 4 36 68899999997 9987754 4999999999999999998 55 44 5789999
Q ss_pred cccceeeeeeccc-cccC-Ccccccccc---ccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 007076 355 GTSTCHMAVSRNK-LFIP-GVWGPFWSA---MVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 429 (619)
Q Consensus 355 GTs~~~~~~~~~~-~~~~-~~~~~~~~~---~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 429 (619)
||++++...+..+ ..++ +....+.+. ..++.|+++++.+++|.+++||++.+... ..|+++++
T Consensus 269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~ 336 (512)
T PLN02295 269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA 336 (512)
T ss_pred cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence 9998866555442 3332 221111111 12788999999999999999999876411 12444555
Q ss_pred HHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007076 430 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509 (619)
Q Consensus 430 ~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~ 509 (619)
++++. ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+. ||++|||||.+|++++.|++.
T Consensus 337 ~a~~~----------~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 337 LAATV----------DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIA---RAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HHHhC----------CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 44331 26789999999999999999999999999999999999965 599999999999999999865
Q ss_pred ------CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcC
Q 007076 510 ------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 583 (619)
Q Consensus 510 ------g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P 583 (619)
+.++++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.++...++|+|
T Consensus 404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P 483 (512)
T PLN02295 404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP 483 (512)
T ss_pred hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC
Confidence 33688999999999999999999999999999999999999999999999999999988765677788899999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076 584 SKDPKVKKYHDAKYLIFRELFEQQVSQRSI 613 (619)
Q Consensus 584 ~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~ 613 (619)
|+++++ |+++|++|+++|++...++++
T Consensus 484 --~~~~~~-y~~~y~~~~~~~~~~~~~~~~ 510 (512)
T PLN02295 484 --KLDEEE-RAKRYASWCKAVERSFDLADL 510 (512)
T ss_pred --CCCHHH-HHHHHHHHHHHHHHHhcchhc
Confidence 899999 999999999999988776654
No 9
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=7.2e-84 Score=714.14 Aligned_cols=480 Identities=22% Similarity=0.375 Sum_probs=407.1
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CEEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFAA 131 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~--~I~aIgis~ 131 (619)
+|+||||+|||++|++|||.+|++++..+.+++... .+|+.||||++||+++++++++++++.+..+. +|.+||||+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~ 81 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGITN 81 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEeec
Confidence 489999999999999999999999999999998654 78999999999999999999999988765555 799999999
Q ss_pred c-ccc--ccC-CCCeeeecCCCCCCccceeecccccHHHHHHHHccc---hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076 132 T-CSL--VDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQES 204 (619)
Q Consensus 132 ~-~~~--vd~-~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~ 204 (619)
| +++ ||+ +|+|| +|+|+|+|.|+.++++++.+.. +.++++||+++++.++++||+|+++|+|++
T Consensus 82 q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~ 152 (504)
T PTZ00294 82 QRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAV 152 (504)
T ss_pred CcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHH
Confidence 8 664 476 59999 8999999999999999998753 346689999999999999999999999999
Q ss_pred Hhccce----eeechhHHHhhhcC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccc
Q 007076 205 WSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 278 (619)
Q Consensus 205 ~~~~~~----~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~ 278 (619)
|+++++ +++++|||.|+||| +.. ++.|+ |++|++||+++++|++++|+.+||+..+
T Consensus 153 ~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------------As~tgl~D~~~~~W~~~ll~~~gi~~~~--- 214 (504)
T PTZ00294 153 KDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------------ASRTFLMNIKTLKWDEELLNKFGIPKET--- 214 (504)
T ss_pred HHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------------hHHhhccCcccCccCHHHHHHhCCCHHH---
Confidence 996554 99999999999999 653 34433 5578899999999999999999999743
Q ss_pred ccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccc
Q 007076 279 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST 358 (619)
Q Consensus 279 lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~ 358 (619)
|| +++++++++|. |++ +.+|+++|+||++|++|++|+++|+ |+..+ +++.+++||++
T Consensus 215 LP----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~ 271 (504)
T PTZ00294 215 LP----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFEK--------------GDAKNTYGTGC 271 (504)
T ss_pred CC----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCCC--------------CceEEeeccce
Confidence 46 68899999997 984 4678899999999999999999998 55433 57999999998
Q ss_pred eeeeee-ccccccCC-cccccccccc---CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHh
Q 007076 359 CHMAVS-RNKLFIPG-VWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES 433 (619)
Q Consensus 359 ~~~~~~-~~~~~~~~-~~~~~~~~~~---~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 433 (619)
++...+ +.+..++. .+..+++... ++.|++++++.++|.+++|+++++... ..|+.+++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~ 339 (504)
T PTZ00294 272 FLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLARS 339 (504)
T ss_pred EEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHHh
Confidence 865544 33444432 2222222221 448999999999999999999876411 124455555543
Q ss_pred hhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 007076 434 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 512 (619)
Q Consensus 434 ~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~ 512 (619)
. ++++|++|+|||.|+|+|+||+++||.|+|++.+|++.|+. ||++|||||.+|++++.|++ .|.+
T Consensus 340 ~----------~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~---rAvlEgia~~~r~~~~~l~~~~g~~ 406 (504)
T PTZ00294 340 V----------KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIV---RAALEAIALQTNDVIESMEKDAGIE 406 (504)
T ss_pred C----------CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 2 26889999999999999999999999999999999999965 59999999999999999987 4778
Q ss_pred cCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHH
Q 007076 513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY 592 (619)
Q Consensus 513 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~ 592 (619)
+++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+| |+++++
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~~~~~~~~~~~~P--~~~~~~- 483 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVKKLIRRSNSTFSP--QMSAEE- 483 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHHHhccCCCcEECC--CCCHHH-
Confidence 89999999999999999999999999999999999999999999999999999999876433336789999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007076 593 HDAKYLIFRELFEQQVSQRS 612 (619)
Q Consensus 593 y~~~y~~y~~l~~~~~~~~~ 612 (619)
|+++|++|+++|+++..|-|
T Consensus 484 y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 484 RKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 99999999999998877654
No 10
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=1.9e-83 Score=713.38 Aligned_cols=490 Identities=22% Similarity=0.309 Sum_probs=420.1
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc---cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~---~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|+||||+|||++|+++||.+|++++..+++++.. +.+|+.||||++||+++++++++++++.+....+|.+||+|+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~ 82 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS 82 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence 59999999999999999999999999998887633 368999999999999999999999988776677899999999
Q ss_pred c-ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076 132 T-CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQES 204 (619)
Q Consensus 132 ~-~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~ 204 (619)
| +++ ||++|+|+ .+ +.|.|.|+.++++++++.. ++++++||.++ +.++++||+|+++|+||+
T Consensus 83 ~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~ 151 (520)
T PRK10939 83 MREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDI 151 (520)
T ss_pred CcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHH
Confidence 8 554 49999999 44 5799999999999997753 46888999875 678999999999999999
Q ss_pred HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCc
Q 007076 205 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 284 (619)
Q Consensus 205 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~ 284 (619)
|+|+.+|++++|||.|+|||+.. ++.|+ +++|++||+++++||+++|+.+||++.+ ||
T Consensus 152 ~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------------As~tgl~d~~~~~W~~~ll~~~gi~~~~---lP---- 209 (520)
T PRK10939 152 YRQAHTITMISDWIAYMLSGELA-VDPSN--------------AGTTGLLDLVTRDWDPALLEMAGLRADI---LP---- 209 (520)
T ss_pred HHHhheEechhHhhhheeeCcee-eEhhh--------------hhceeeeecCCCCCCHHHHHHcCCCHHH---CC----
Confidence 99999999999999999999874 34443 4577899999999999999999999754 36
Q ss_pred ccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeee
Q 007076 285 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS 364 (619)
Q Consensus 285 ~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~ 364 (619)
+++++++++|. |++++|+.+||++|+||++|++|++|+++|+ |+..+ +++++++||+.++...+
T Consensus 210 ~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~ 273 (520)
T PRK10939 210 PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVRP--------------GQTAVLGGTFWQQVVNL 273 (520)
T ss_pred CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-CcccC--------------CcEEEeecCcceeEEec
Confidence 68899999997 9999999999999999999999999999998 55544 57899999999877777
Q ss_pred ccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076 365 RNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 444 (619)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 444 (619)
+.+..++........+..++.|.+++.++++|.+++||+++++..+.. .++..+.+.|+.+++++++. |
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~---------~ 342 (520)
T PRK10939 274 PAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASRV---------P 342 (520)
T ss_pred cccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhhC---------C
Confidence 766555532111223556888999999999999999999987542211 12223556788888877653 3
Q ss_pred CCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007076 445 ALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG 520 (619)
Q Consensus 445 ~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~---~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~G 520 (619)
++++|+ +|||.|++.|.++++++|+|+|++.+| ++.|+ +||++|||||.+|++++.+++ .+.++++|+++|
T Consensus 343 ~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~---~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~G 417 (520)
T PRK10939 343 VGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATL---FRALEENAAIVSACNLQQIAAFSGVFPSSLVFAG 417 (520)
T ss_pred CCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 577787 599999986555568999999999987 67775 569999999999999999987 478899999999
Q ss_pred CCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHH
Q 007076 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF 600 (619)
Q Consensus 521 G~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y 600 (619)
|+++|++|+||+|||+|+||++++..|++++|||++|++++|.|++++++.+.+.+..++|+| ++++++.|+++|++|
T Consensus 418 Gga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~y~~y 495 (520)
T PRK10939 418 GGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRWERTFEP--NPENHELYQEAKEKW 495 (520)
T ss_pred CcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcccCceECc--CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888778899999 999999999999999
Q ss_pred HHHHHHHHHHH
Q 007076 601 RELFEQQVSQR 611 (619)
Q Consensus 601 ~~l~~~~~~~~ 611 (619)
+++|++++.++
T Consensus 496 ~~l~~~~~~~~ 506 (520)
T PRK10939 496 QAVYADQLGLV 506 (520)
T ss_pred HHHHHHHHHHH
Confidence 99999887664
No 11
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=2e-83 Score=670.62 Aligned_cols=529 Identities=43% Similarity=0.756 Sum_probs=466.9
Q ss_pred CCeEEEEEcCCcceEEEEEcCC-CCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 54 RSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~-g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
++|+||||+||.|.|+++||.. |++++.+.+|++... .+...||++.++|++++++++.+++++++++.+|++|||++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 4789999999999999999955 999999999999776 77788999999999999999999999999999999999999
Q ss_pred ccccc--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076 132 TCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 209 (619)
Q Consensus 132 ~~~~v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 209 (619)
++++| |++|+|++.........++|.|+|.|+.+++++++...++++...|..+++.|-.|||+|+++|.|++|+|+.
T Consensus 82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~ 161 (544)
T COG1069 82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAA 161 (544)
T ss_pred eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhh
Confidence 87765 9999999765443333479999999999999999998888999999999999999999999999999999999
Q ss_pred eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076 210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289 (619)
Q Consensus 210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~ 289 (619)
+|+.+.|||.|+|||....+.++.+|+|+++. -+.+.|++++++.+|++.... ...+|+.++++.
T Consensus 162 ~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~~--------------~~~~~~~~~~f~~ig~~~l~~-~~~~l~~~i~~~ 226 (544)
T COG1069 162 HIFDLADWLTWKLTGSIARSRCTAGCKWNWLE--------------HEGGLWSADFFDKIGLDDLRE-LDSKLPEDIVPA 226 (544)
T ss_pred hhhhHHHHHHHHhhcchhhccccceeeeeeec--------------cccCCCCHHHHHhcCchhhhc-ccccCCcccccC
Confidence 99999999999999999899999999998752 145679999999999886543 214566799999
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccc
Q 007076 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 369 (619)
Q Consensus 290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~ 369 (619)
|+.+|+ +++++|+++||++||.|..|+.|.+++.+|+.+.. ++.+..++|||+|.+..++++.+
T Consensus 227 g~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---------------~~~l~~I~GTStC~m~~s~~~~~ 290 (544)
T COG1069 227 GEPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---------------PGSLAMIAGTSTCHMLLSEKPRF 290 (544)
T ss_pred Cccccc-cCHHHHHHhCCCCCcEEeccceeccccccccccCC---------------CCeEEEEeccceEEEEecCCcee
Confidence 999996 99999999999999999999999999999985433 36899999999999999999999
Q ss_pred cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCc
Q 007076 370 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 449 (619)
Q Consensus 370 ~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 449 (619)
.+++|+++.....||.|++||+++++|..++||.+.+....+........+.+.|+.+++.++.+...... ++++.++
T Consensus 291 v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~ 368 (544)
T COG1069 291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASG 368 (544)
T ss_pred cCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCC
Confidence 99999999888899999999999999999999998864322221111112445666666666655433211 3578999
Q ss_pred eEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHH
Q 007076 450 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL 529 (619)
Q Consensus 450 l~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~ 529 (619)
++|+|+|+|+|+|+-||+++|+|+|++++|++++++.+|+|.+|+++|..|.++|.|++.|+.+++|+++||..||++||
T Consensus 369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llm 448 (544)
T COG1069 369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLM 448 (544)
T ss_pred cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 007076 530 QQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP-KVKKYHDAKYLIFRELFEQQV 608 (619)
Q Consensus 530 Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~-~~~~~y~~~y~~y~~l~~~~~ 608 (619)
|+.||++|+||+++..+++.++|+||+++++.|.|.|+..|.++|........| ++ +.++.|+++|++|++++....
T Consensus 449 ql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~--~~~~~~~~y~~lyr~y~~l~~~~~ 526 (544)
T COG1069 449 QLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLP--PPPERAARYERLYRRYLQLHDDAE 526 (544)
T ss_pred HHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecC--ChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999877666666 45 999999999999999999988
Q ss_pred HHHHHHHHh
Q 007076 609 SQRSIMAQA 617 (619)
Q Consensus 609 ~~~~~~~~~ 617 (619)
+..+.+.+.
T Consensus 527 ~~~~~~~k~ 535 (544)
T COG1069 527 KHYARVMKP 535 (544)
T ss_pred hhhhhhhcc
Confidence 877666553
No 12
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=3.7e-82 Score=699.12 Aligned_cols=473 Identities=23% Similarity=0.380 Sum_probs=405.9
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (619)
+|+||||+|||++|++|||.+|++++..+.+++.. +.+||.|||+++||+++++++++++++.++.+++|.+|||++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 47999999999999999999999999999988754 4889999999999999999999999988777788999999998
Q ss_pred ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076 133 CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 207 (619)
Q Consensus 133 ~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 207 (619)
+++ ||++ |+|+ +|+|+|+|.|+.++++++++.. ++++++||.++++.++++||+|+++|+||+|++
T Consensus 81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~ 151 (493)
T TIGR01311 81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA 151 (493)
T ss_pred ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence 554 4976 9999 8999999999999999998764 678999999999999999999999999999997
Q ss_pred cc----eeeechhHHHhhhcC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076 208 VF----RWMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 281 (619)
Q Consensus 208 ~~----~~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~ 281 (619)
++ +|++++|||.|+||| +.. ++.|+ +++|++||+++++|++++|+.+||++.+ ||
T Consensus 152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~~l~~~gi~~~~---lP- 212 (493)
T TIGR01311 152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------------ASRTMLFNIHTLDWDDELLELFGIPREI---LP- 212 (493)
T ss_pred hhcCCeEEECHhHhhhhhccCCceEE-eccch--------------hhhhhcccccccccCHHHHHHcCCCHHH---CC-
Confidence 75 488999999999999 553 44443 4567899999999999999999999743 36
Q ss_pred cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076 282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 361 (619)
Q Consensus 282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~ 361 (619)
+++++++++|. |+++ ++++||||++|++|++|+++|+ |..++ +++++++||++++.
T Consensus 213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~~~~ 268 (493)
T TIGR01311 213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFKP--------------GQAKNTYGTGCFLL 268 (493)
T ss_pred ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCCC--------------CceEEeecccceEe
Confidence 68899999997 9876 7779999999999999999998 55543 58999999998865
Q ss_pred eeec-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhh
Q 007076 362 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH 436 (619)
Q Consensus 362 ~~~~-~~~~~~-~~~~~~~~~~~~~---~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 436 (619)
+.+. .+..++ +....+++ ..++ .|+.++++.++|.+++||++.++.. ..|+.++++++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~--- 332 (493)
T TIGR01311 269 MNTGEKPVISKHGLLTTVAY-QLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARS--- 332 (493)
T ss_pred eecCCccccCCCCceEEEEE-ecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhc---
Confidence 5443 333333 22222222 2233 4899999999999999999987421 124555554432
Q ss_pred ccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCE
Q 007076 437 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT 515 (619)
Q Consensus 437 ~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~ 515 (619)
+ ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+. ||++|||||.+|++++.|++. |.++++
T Consensus 333 ---~----~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~~~~~ 402 (493)
T TIGR01311 333 ---V----EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIA---RAALEAIAFQTRDVLEAMEKDAGVEITK 402 (493)
T ss_pred ---C----CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 1 36889999999999999999999999999999999999865 599999999999999999874 778899
Q ss_pred EEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076 516 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 595 (619)
Q Consensus 516 I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~ 595 (619)
|+++||++||++|+||+||++|+||+++...|++++|||++|++++|.|++++++ +.+.+..++|+| ++++++ |++
T Consensus 403 i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P--~~~~~~-y~~ 478 (493)
T TIGR01311 403 LRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEP--EMDEEE-REA 478 (493)
T ss_pred EEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECC--CCCHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999986 777788899999 888887 999
Q ss_pred HHHHHHHHHHHHHH
Q 007076 596 KYLIFRELFEQQVS 609 (619)
Q Consensus 596 ~y~~y~~l~~~~~~ 609 (619)
+|++|+++|+++..
T Consensus 479 ~~~~~~~~~~~~~~ 492 (493)
T TIGR01311 479 RYAGWKEAVKRSLG 492 (493)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 13
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=2.9e-81 Score=692.29 Aligned_cols=474 Identities=28% Similarity=0.441 Sum_probs=419.8
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-ccc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL 135 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~ 135 (619)
||||+|||++|++|+|.+|+++++.+.+++... .+|+.+||++++|+++++++++++++.+..+.+|.+|||++| +|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 589999999999999999999999999998654 899999999999999999999999987777788999999987 776
Q ss_pred c--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcccee
Q 007076 136 V--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 211 (619)
Q Consensus 136 v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~ 211 (619)
| |++|+++ .|.++|+|.|..++++++++.. +.+++.+|+...+.++++||+|+++|+|++|+++.+|
T Consensus 81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~ 151 (481)
T TIGR01312 81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV 151 (481)
T ss_pred EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence 6 9889999 7888999999998888887753 5778899999999999999999999999999999999
Q ss_pred eechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007076 212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291 (619)
Q Consensus 212 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~ 291 (619)
++++|||.|+|||+.. ++.++ +++||+||+++++|++++|+.+|||+.+ || +++++++
T Consensus 152 ~~~~~yi~~~LtG~~~-~d~t~--------------as~tgl~d~~~~~W~~~~l~~~gi~~~~---Lp----~iv~~~~ 209 (481)
T TIGR01312 152 MLPKDYLRYRLTGEYV-TEYSD--------------ASGTGWFDVAKRAWSKELLDALDLPESQ---LP----ELIESSE 209 (481)
T ss_pred eCchHHHhhhhcCCee-eeHHH--------------hhcccccccCCCCCCHHHHHHhCCCHHH---CC----CccCCCC
Confidence 9999999999999864 33332 5678899999999999999999999743 46 6889999
Q ss_pred ccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccC
Q 007076 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 371 (619)
Q Consensus 292 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~ 371 (619)
++|+ |++++|+++||++|+||++|+||++|+++|+ |... ++++++++|||+++..+++++..++
T Consensus 210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~ 273 (481)
T TIGR01312 210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVD--------------PGDAMMSLGTSGVVYAVTDKPLPDP 273 (481)
T ss_pred eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-Cccc--------------CCcEEEEecCceEEEEecCCcccCc
Confidence 9997 9999999999999999999999999999998 5443 3689999999999988887766554
Q ss_pred CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceE
Q 007076 372 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 451 (619)
Q Consensus 372 ~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 451 (619)
......+++..++.|+.+++..++|.+++|+++.+.. ..|+.|++++++. |+++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~~---------~~~~~~~~ 331 (481)
T TIGR01312 274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQS---------PPGAEGVT 331 (481)
T ss_pred ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhcC---------CCCCCCeE
Confidence 3222223345578899999999999999999987631 1356777766542 35788999
Q ss_pred EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHH
Q 007076 452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 530 (619)
Q Consensus 452 flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Q 530 (619)
|+|||.|+|+|+||++++|+|+|++.+|++.|+. ||++||+||.+|++++.|++. +.++++|+++||++||++|+|
T Consensus 332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~---railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q 408 (481)
T TIGR01312 332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRADLT---RAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQ 408 (481)
T ss_pred EecccccCCCCCCCCCcceEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHH
Confidence 9999999999999999999999999999999865 599999999999999999885 578899999999999999999
Q ss_pred HHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007076 531 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE 605 (619)
Q Consensus 531 i~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~ 605 (619)
|+||++|+||++++.+|++++|||++|++++|.|++++++.+.+.+..++|+| ++++++.|+++|++|+++|+
T Consensus 409 ~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~~~~~~~~~~ 481 (481)
T TIGR01312 409 MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--IAENVEAYEELYERYKKLYQ 481 (481)
T ss_pred HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCCCceECC--CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988888888889999 99999999999999999873
No 14
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.2e-79 Score=675.33 Aligned_cols=456 Identities=21% Similarity=0.264 Sum_probs=388.7
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc--c-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--W-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~--~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|+||||+|||++|+++||.+|++++..+.+++. . +.+||.||||++||+++++++++++++. ...+|.+||||+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 4799999999999999999999999999988763 2 3789999999999999999999998864 346799999999
Q ss_pred c-cc--cccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076 132 T-CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 206 (619)
Q Consensus 132 ~-~~--~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 206 (619)
| ++ ++|++|+|| +|+|+|+|.|+.++++++++.. ++++++||+++.+.++++||+|+++|+|++|+
T Consensus 80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~ 150 (470)
T PRK10331 80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE 150 (470)
T ss_pred cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence 8 54 459999999 8999999999999999998764 57889999999999999999999999999999
Q ss_pred ccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCccc
Q 007076 207 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 286 (619)
Q Consensus 207 ~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v 286 (619)
++++|++++|||.|+|||+.. ++.|+ +++|++||+++++|++++++.+||++.+ || ++
T Consensus 151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~i 208 (470)
T PRK10331 151 QAHAWLFISSLINHRLTGEFT-TDITM--------------AGTSQMLDIQQRDFSPEILQATGLSRRL---FP----RL 208 (470)
T ss_pred HhhhhcCHHHHHHHhhcCccc-cchhh--------------ccceeeeecccCCCCHHHHHHcCCCHHH---CC----Cc
Confidence 999999999999999999874 34443 4567899999999999999999999753 36 68
Q ss_pred ccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeecc
Q 007076 287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 366 (619)
Q Consensus 287 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~ 366 (619)
+++++++|+ |++++|+++||++|+||++|+||++|+++|+ |.. + +++++++||+.++..++++
T Consensus 209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GT~~~~~~~~~~ 271 (470)
T PRK10331 209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GAG-Q--------------NQPVLSSGTWEILMVRSAQ 271 (470)
T ss_pred ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CCC-C--------------CCEEEecchhhhheeecCC
Confidence 899999997 9999999999999999999999999999998 543 3 5789999999998877776
Q ss_pred ccccCC--cccc-ccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCc
Q 007076 367 KLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 443 (619)
Q Consensus 367 ~~~~~~--~~~~-~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 443 (619)
+..... .... +..+..++.|..++.... |.+++|+++++.. +.+.|+.|++++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~W~~~~~~~-----------~~~~y~~l~~~a~~~--------- 330 (470)
T PRK10331 272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SGVLEWVRKLFWT-----------AETPYQTMIEEARAI--------- 330 (470)
T ss_pred CcccccccccccceeccccCceeeechhhHH-HHHHHHHHHHhcc-----------cCchHHHHHHHHhcC---------
Confidence 554321 0011 111233556655544444 4489999987742 124678887776542
Q ss_pred cCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076 444 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 522 (619)
Q Consensus 444 ~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~ 522 (619)
|++++|++|+|+|.|+| ||+|+|++.+|++.|+ +||++|||||++|++++.|++. +.++++|+++||+
T Consensus 331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg 399 (470)
T PRK10331 331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG 399 (470)
T ss_pred CCCCCceEecccccccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence 36889999999999987 9999999999999986 5699999999999999999886 4578999999999
Q ss_pred cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076 523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 595 (619)
Q Consensus 523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~ 595 (619)
+||++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+| + .+++.|++
T Consensus 400 a~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~~~~~~P--~-~~~~~y~~ 469 (470)
T PRK10331 400 SRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQYRYFYP--Q-TEPEFIEE 469 (470)
T ss_pred ccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhcceeECC--C-ccHhhhhc
Confidence 9999999999999999999999999999999999999999999999988888777789999 7 55777764
No 15
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-79 Score=674.06 Aligned_cols=489 Identities=29% Similarity=0.447 Sum_probs=419.9
Q ss_pred CCCCeEEEEEcCCcceEEEEEcCC-CCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~~-g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
|+++|+||||+|||++|+++||.+ |++++..+.+++.. +.+||.||||++||+++++++++++++.+++..+|.+|||
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 456899999999999999999998 89999999988877 5999999999999999999999999987777889999999
Q ss_pred cCc-cccc--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076 130 AAT-CSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES 204 (619)
Q Consensus 130 s~~-~~~v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~ 204 (619)
++| +++| |++|+|| +|+|+|+|.|+.++++++.+.. ++.+..||.++.+.++++||+|+++|+||+
T Consensus 81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~ 151 (502)
T COG1070 81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL 151 (502)
T ss_pred eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence 998 6654 9999999 8999999999999999998874 467777999999999999999999999999
Q ss_pred HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCc-cccccccccC
Q 007076 205 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIG 283 (619)
Q Consensus 205 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~-~l~~~lp~l~ 283 (619)
|+|+.+|++++|||.|+|||++. ++.|+ ++.|++||+++++|+.++|+.+|+++ .+ ||
T Consensus 152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~--------------as~t~l~d~~~~~w~~~~l~~~gl~~~~~---lp--- 210 (502)
T COG1070 152 FAKAAKILLIKDYLRYRLTGEFA-TEISD--------------ASGTGLLDIRTRKWDWELLAALGLPERDL---LP--- 210 (502)
T ss_pred HHhhhheechHHHHHHHHhCCcc-ccccc--------------ccccccccccccccCHHHHHHcCCChHHh---CC---
Confidence 99999999999999999999975 34443 45678999999999999999999995 43 46
Q ss_pred cccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeee
Q 007076 284 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV 363 (619)
Q Consensus 284 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~ 363 (619)
+++.+++++|. |++++|+++||++++||++|+||++++++|+ |+.++ +++..++||+.++...
T Consensus 211 -~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~--------------g~~~~~~gts~~~~~~ 273 (502)
T COG1070 211 -PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDP--------------GDVSSSTGTSGVVRAA 273 (502)
T ss_pred -CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCC--------------CcEEEEeccccEEeee
Confidence 78999999997 9999999999999999999999999999998 67654 4688899999988888
Q ss_pred eccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCc
Q 007076 364 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 443 (619)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 443 (619)
++++..++......+++..++.|+.++..+++|.+++|+++.+.... .+..+.......+ .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~------------~~~~~~~~~~~~~-------~ 334 (502)
T COG1070 274 TDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE------------SYPELLEEALAVP-------A 334 (502)
T ss_pred ccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc------------CcHHHHHHHHhcc-------C
Confidence 87765544322222334457788888999999999999998764310 1222222222111 1
Q ss_pred cCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076 444 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 522 (619)
Q Consensus 444 ~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~ 522 (619)
++++.++.|+|||.|||.|++++++|+.|+|++..|++.++. ||++||++|.++..++.|++. +.++++|+++||+
T Consensus 335 ~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~---ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg 411 (502)
T COG1070 335 PAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLA---RAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG 411 (502)
T ss_pred CCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc
Confidence 357889999999999999999999999999999999998865 599999999999999999996 7889999999999
Q ss_pred cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC-CHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHH
Q 007076 523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR 601 (619)
Q Consensus 523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~-~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~ 601 (619)
|||++|+||+||++|+||.++...|++++|+|++++.+++.+. +.+++.+.+.. .+.+.| |++..+.|+++|++|+
T Consensus 412 ars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--~~~~~~~y~~~~~~~~ 488 (502)
T COG1070 412 ARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD-ARRIIP--DPERAAAYQELYERYR 488 (502)
T ss_pred ccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc-ccccCC--ChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888888876554 44554444444 788999 9999999999999999
Q ss_pred HHHHHHHHHHH
Q 007076 602 ELFEQQVSQRS 612 (619)
Q Consensus 602 ~l~~~~~~~~~ 612 (619)
++|+++..+..
T Consensus 489 ~~y~~~~~~~~ 499 (502)
T COG1070 489 ALYQALLALYR 499 (502)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.3e-76 Score=649.79 Aligned_cols=450 Identities=21% Similarity=0.290 Sum_probs=380.9
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecc--c-ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ--I-WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~--~-~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
|+||||+|||++|++|||.+|++++..+.+++ . .+.+||.||||++||+++++++++++.+ ..+.+|.+||+++|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~ 79 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF 79 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence 68999999999999999999999999988865 3 3478999999999999999999999865 34567999999998
Q ss_pred -cc--cccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076 133 -CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 207 (619)
Q Consensus 133 -~~--~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 207 (619)
++ ++|++|+|+ +|+|+|+|.|+.++++++.+.. ++++++||.++.+.++++||+|+++|+||+|++
T Consensus 80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 150 (465)
T TIGR02628 80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER 150 (465)
T ss_pred ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence 55 459999999 8999999999999999998763 578899999999999999999999999999999
Q ss_pred cceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccc
Q 007076 208 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287 (619)
Q Consensus 208 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~ 287 (619)
+++|++++|||.|+|||+.. ++.++ +++|++||+++++||+++|+.+||++.+ || +++
T Consensus 151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~w~~ell~~~gi~~~~---lP----~l~ 208 (465)
T TIGR02628 151 MHKFVFISSMITHRLTGEFT-TDITM--------------AGTSMMTDLTQRNWSPQILQALGLSRRL---FP----PLV 208 (465)
T ss_pred HHHhhCcHHHHHHHHhCCcc-cchhh--------------hhcceeeecCcCCCCHHHHHHcCCCHHH---CC----Ccc
Confidence 99999999999999999875 34433 4577899999999999999999999753 36 688
Q ss_pred cCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccc
Q 007076 288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 367 (619)
Q Consensus 288 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~ 367 (619)
++++++|. |++++|+++||++||||++|++|++|+++|+ +.. + +++++++|||+++...+++|
T Consensus 209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GTs~~~~~~~~~~ 271 (465)
T TIGR02628 209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GAE-Q--------------NQPVLSSGTWEILMARSQQV 271 (465)
T ss_pred cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CCC-C--------------CcEEEeccchhhheeccCcC
Confidence 99999997 9999999999999999999999999999998 543 3 57899999999888777766
Q ss_pred cccCCcc-cccc--ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076 368 LFIPGVW-GPFW--SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 444 (619)
Q Consensus 368 ~~~~~~~-~~~~--~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 444 (619)
..++... ..+. .+..++.|...+....+| +++||++.+...+ . .+.+.|+.+++.+++. +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~----~---~~~~~~~~l~~~a~~~---------~ 334 (465)
T TIGR02628 272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE----T---PSDHYYQMMIEEARLI---------A 334 (465)
T ss_pred CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh----h---ccccHHHHHHHHHHhC---------C
Confidence 6554321 1111 112356676555445555 8999998763210 0 1123568888776653 3
Q ss_pred CCCCceE-EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076 445 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 522 (619)
Q Consensus 445 ~g~~gl~-flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~ 522 (619)
++++|++ |+|++. +.+||+|+|++.+|++.|+ +||++||+||.+|++++.|++. +.++++|+++||+
T Consensus 335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg 403 (465)
T TIGR02628 335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG 403 (465)
T ss_pred CCCCcceeecccCC--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence 5788998 888753 5689999999999999886 5699999999999999999986 4688999999999
Q ss_pred cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcC
Q 007076 523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 583 (619)
Q Consensus 523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P 583 (619)
++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+|
T Consensus 404 a~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P 464 (465)
T TIGR02628 404 SKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYP 464 (465)
T ss_pred cCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhccceeeCC
Confidence 9999999999999999999999999999999999999999999999988888777888999
No 17
>PLN02669 xylulokinase
Probab=100.00 E-value=1.9e-73 Score=633.13 Aligned_cols=485 Identities=16% Similarity=0.133 Sum_probs=395.4
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV 119 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~----~~~~g~~e~dp~----------~~~~~~~~~l~~~~~~~~~ 119 (619)
++|+||||+|||++|++|||++|+++++++.+++. +..+|++||||+ .||+++..+++++. +.+.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~ 85 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF 85 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence 36899999999999999999999999999998863 235678999998 67899999999987 4566
Q ss_pred CCCCEEEEEEcCc-cccc--cC-CCCeeeec-CCC---------CCCccceeecccccHHHHHHHHccc---hhHHhhhC
Q 007076 120 DGEEVKGVGFAAT-CSLV--DA-DGSPVSVS-WNG---------DSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG 182 (619)
Q Consensus 120 ~~~~I~aIgis~~-~~~v--d~-~G~pl~~~-~~~---------~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG 182 (619)
+.++|.+|++|+| +|+| |+ .|+|+.++ .++ ...+|+++|+|.|+.++++++++.. ++++++||
T Consensus 86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG 165 (556)
T PLN02669 86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG 165 (556)
T ss_pred ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence 6788999999998 7754 77 48887432 111 1125899999999999999998763 47889999
Q ss_pred CCCCCCChHHHHHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCC
Q 007076 183 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD 262 (619)
Q Consensus 183 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~ 262 (619)
+++++.|+.+||+|+++|+||+|+++.+|+.++|||.|+|||+...+|.|+ ++++++||+++++||
T Consensus 166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sd--------------asg~~l~Di~~~~Ws 231 (556)
T PLN02669 166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETD--------------GAGMNLMDIEKRCWS 231 (556)
T ss_pred CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchh--------------hhhhhhhccccCCcC
Confidence 999999999999999999999999999999999999999999864456554 446778999999999
Q ss_pred HHHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhh
Q 007076 263 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE 342 (619)
Q Consensus 263 ~~ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~ 342 (619)
+++|+.+++... .+|| +++++++++|+ |++++|+++||++||||++|++|++|+++|+ |+.++
T Consensus 232 ~~ll~~~~~~l~--~~Lp----~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~~--------- 294 (556)
T PLN02669 232 KAALEATAPGLE--EKLG----KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLSTP--------- 294 (556)
T ss_pred HHHHHhhCccHH--HHCc----CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCCC---------
Confidence 999999954311 1245 68889999997 9999999999999999999999999999998 66544
Q ss_pred hhcccCeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCC
Q 007076 343 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 422 (619)
Q Consensus 343 ~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~ 422 (619)
+++.+++|||+++..+++++.+++.. ..+++...++.|+.+++..++|.+++|+++++. .+
T Consensus 295 -----g~~~~slGTs~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~-------------~~ 355 (556)
T PLN02669 295 -----GDLAISLGTSDTVFGITREPQPSLEG-HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCA-------------DG 355 (556)
T ss_pred -----CeEEEEEcccceEEEecCCCCCCCCc-ceeeCccCCCCeEEEEEecchHHHHHHHHHHhc-------------cC
Confidence 68999999999988888876655432 123333447899999999999999999998763 13
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCC----CCCCCcEeEEcCCCC---------CCHHHHHHHHH
Q 007076 423 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLYL 489 (619)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~----~d~~a~g~~~Gl~~~---------~~~~~l~~~~r 489 (619)
.|+.|++++++. |++++|++++||+.||+.|+ +++.++|.|+|++.+ |++.|+ +|
T Consensus 356 ~~~~~~~~~~~~---------~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~R 423 (556)
T PLN02669 356 SWDVFNKLLEQT---------PPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---VR 423 (556)
T ss_pred cHHHHHHHHHhC---------CCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---HH
Confidence 467777776552 35789999899999999996 566788999999988 578886 56
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIE 569 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~ 569 (619)
|++||++|++|.+++.|+ .+.++++|+++||+|+|+.|+||+|||||+||++++..|++++|||++|+++ ++.+ +
T Consensus 424 AvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~--~~~~--~ 498 (556)
T PLN02669 424 AIIEGQFLSMRAHAERFG-MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHG--WLCN--E 498 (556)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHH--Hhhh--h
Confidence 999999999999999996 3567899999999999999999999999999999999999999999999984 4433 1
Q ss_pred HHHHhhcCC-------------eEE--cCCCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 007076 570 AMKAMNAAG-------------QVI--HPSKDP-KVKKYHDAKYLIFRELFEQQVS 609 (619)
Q Consensus 570 a~~~~~~~~-------------~~~--~P~~~~-~~~~~y~~~y~~y~~l~~~~~~ 609 (619)
+ ..+++.. ..+ +| .+ +..+.|..+.++|.++-+.+..
T Consensus 499 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~ 551 (556)
T PLN02669 499 Q-GSFVPISCLYEGKLEATSLSCKLAVKA--GDQELLSQYGLLMKKRMEIEQQLVE 551 (556)
T ss_pred h-cccCChhhhcccccccCcccceeeccC--CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2221111 112 55 33 6677888888888887766543
No 18
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-67 Score=556.12 Aligned_cols=489 Identities=36% Similarity=0.560 Sum_probs=388.4
Q ss_pred CCeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEE
Q 007076 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVD---GEEVKGVG 128 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~---~~~I~aIg 128 (619)
+++++|||+||||+|++||| .+|+++..++.++... +.+||+||||.++|+++++||+++.+..+.. ...+.+||
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 57899999999999999999 7899999999888765 4899999999999999999999998876543 34477799
Q ss_pred EcCc-cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccch-hH---HhhhCCCCCCCChHHHHHHHHHh
Q 007076 129 FAAT-CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS-PV---LQYCGGAVSPEMQPPKLLWVKEN 200 (619)
Q Consensus 129 is~~-~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~-~~---~~~tG~~~~~~~~~~kl~Wl~~~ 200 (619)
|+.| ++ +|++. |+|+ .++|.|+|.|+..++++++.... .. ...+|++++++|.++||+||++|
T Consensus 85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn 155 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN 155 (516)
T ss_pred EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence 9998 44 44765 9998 79999999999999999998752 22 25799999999999999999999
Q ss_pred Cchh-HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccc
Q 007076 201 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH 279 (619)
Q Consensus 201 ~pe~-~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~l 279 (619)
.|++ .......+..++|+.|++++-...+.+ . -.+.++++++++||..++.||..+++.+|||..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~--~-------~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~ll--- 223 (516)
T KOG2517|consen 156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC--H-------CTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLL--- 223 (516)
T ss_pred CHHHHHHHHhcccchhhhhhheeecCCcccee--c-------cccccccccccccchhhhhhhhhhhhhhCCCcccC---
Confidence 9998 666677666666666666554321111 0 01234577899999999999999999999998765
Q ss_pred cccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccce
Q 007076 280 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC 359 (619)
Q Consensus 280 p~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~ 359 (619)
| ++..+++++|. + .+..+|+.+|+||.++.+|++|+++|..+.. + +....+.||+..
T Consensus 224 p----~i~s~~e~~g~-~---~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~-~--------------g~~~~t~~t~~F 280 (516)
T KOG2517|consen 224 P----DIRSSSEVYGT-T---AAGDLGLLEGTPVSSCLGDQQASMVGQMCYK-P--------------GCAKLTYGTGCF 280 (516)
T ss_pred C----ccccccccccc-c---cccccccccCcceeechhhHHHHHHhHhhhc-C--------------cceEEeeCCceE
Confidence 5 67788898886 3 2346779999999999999999999985543 2 356666677665
Q ss_pred eeeeecccc--ccCCcccccc-ccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhh
Q 007076 360 HMAVSRNKL--FIPGVWGPFW-SAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM 434 (619)
Q Consensus 360 ~~~~~~~~~--~~~~~~~~~~-~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 434 (619)
+........ ..++.|.... ...... .|+++|....+|..++|+++.+...++ ...+++++.+.
T Consensus 281 l~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~~~ 348 (516)
T KOG2517|consen 281 LLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAAEV 348 (516)
T ss_pred EeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHHhh
Confidence 554443211 1122221100 001111 377788888888899999887642211 11233334332
Q ss_pred hhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q 007076 435 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKI 513 (619)
Q Consensus 435 ~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g-~~~ 513 (619)
..+.+++|+|.|.|.|+|||||++||+|+|++.+|+.+|+++ |++|+|||++|++++.|++.+ .++
T Consensus 349 ----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~~i 415 (516)
T KOG2517|consen 349 ----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGHPI 415 (516)
T ss_pred ----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 258899999999999999999999999999999999999876 999999999999999999876 799
Q ss_pred CEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccc--cCCHHHHHHHhhcCCeEEcCCCChhhHH
Q 007076 514 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKK 591 (619)
Q Consensus 514 ~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~--~~~~~~a~~~~~~~~~~~~P~~~~~~~~ 591 (619)
++++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|. |.+.+++. +....++|.|+.+. +
T Consensus 416 ~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~---~ 490 (516)
T KOG2517|consen 416 STLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD---K 490 (516)
T ss_pred ceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc---H
Confidence 99999999999999999999999999999999999999999999999999 66666643 46778999995443 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076 592 YHDAKYLIFRELFEQQVSQRSIMAQ 616 (619)
Q Consensus 592 ~y~~~y~~y~~l~~~~~~~~~~~~~ 616 (619)
.++.+|++|++++++++.|++++..
T Consensus 491 ~~~~ky~~w~~ave~~~~~~~~~~~ 515 (516)
T KOG2517|consen 491 LLDKKYQIWLKAVERQLGYRRIVDE 515 (516)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhccC
Confidence 8999999999999999999998753
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.9e-67 Score=576.16 Aligned_cols=427 Identities=16% Similarity=0.161 Sum_probs=345.3
Q ss_pred EEEEcCCcceEEEEEcCC---CCEE-EEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~---g~il-~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+|||+|||++|++++|.+ |+++ ....++++.. +.+++.+|||+.||+++.++++++.+. ..+|.+|||++|
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q 76 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW 76 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence 589999999999999977 5666 5666665543 478899999999999999999998763 346999999999
Q ss_pred -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076 133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 207 (619)
Q Consensus 133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 207 (619)
+++ ||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++.+.++++||+|+++|+|++|+|
T Consensus 77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~ 147 (454)
T TIGR02627 77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK 147 (454)
T ss_pred ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence 554 49999999 8999999999999999998764 678999999999999999999999999999999
Q ss_pred cceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccc
Q 007076 208 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287 (619)
Q Consensus 208 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~ 287 (619)
+++|++++|||.|+|||+.. ++.|+ +|+|++||+++++||+++++.+||++.+ || +++
T Consensus 148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----~l~ 205 (454)
T TIGR02627 148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------------ATTTQLVNINTDDWDEDLLAYLGVPAAW---FG----RPT 205 (454)
T ss_pred HHHhCCHHHHHHHheeCCce-eeeeh--------------hhhcccccCCCCCcCHHHHHHcCCCHHH---cC----Ccc
Confidence 99999999999999999874 34443 5578899999999999999999999743 36 688
Q ss_pred cCCCccCCCccHHHHHHcCCCCCCcEEE-ccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeecc
Q 007076 288 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 366 (619)
Q Consensus 288 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~ 366 (619)
++++++|. +.+ .|+ +|+||++ |+||++|+++|+ |..++ +++.+++|||.++...++.
T Consensus 206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~ 263 (454)
T TIGR02627 206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQGE--------------NAAYLSSGTWSLMGFESQT 263 (454)
T ss_pred CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCCC--------------CcEEEEEcHHHHhcccCCC
Confidence 99999996 653 467 7999998 999999999998 55543 6899999999988777776
Q ss_pred ccccCCcccc-cc-ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076 367 KLFIPGVWGP-FW-SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 444 (619)
Q Consensus 367 ~~~~~~~~~~-~~-~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 444 (619)
+..++..+.. +. ....++.|...+... ++ |+++.+.... +.+.|+.+.+.++. +|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~~---------~~~~~~~l~~~a~~------~p--- 320 (454)
T TIGR02627 264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRER---------DINDLPALIEQAQA------LP--- 320 (454)
T ss_pred CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhhh---------ccccHHHHHHHhcC------CC---
Confidence 6654432211 11 122356666654443 33 7776553210 12345555544432 22
Q ss_pred CCCCceEEcccCCCCCCCCCCCC-CcEe------EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEE
Q 007076 445 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 516 (619)
Q Consensus 445 ~g~~gl~flP~l~G~r~P~~d~~-a~g~------~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I 516 (619)
+ |.|++.|++.|+|||+ +++. |+|++.+|++.|+ +||++|||||.+|++++.|++. +.++++|
T Consensus 321 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i 391 (454)
T TIGR02627 321 A------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQL 391 (454)
T ss_pred C------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence 2 4467789999999995 5544 5999999999996 5699999999999999999885 6788999
Q ss_pred EEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHh
Q 007076 517 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 574 (619)
Q Consensus 517 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~ 574 (619)
+++||+++|++|+||+||++|+||++.. .|++++|||++|++++|.|++++++.+.+
T Consensus 392 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~~~ 448 (454)
T TIGR02627 392 HIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQIV 448 (454)
T ss_pred EEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 9999999999999999999999998765 77999999999999999999998875544
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=8.7e-66 Score=563.57 Aligned_cols=442 Identities=15% Similarity=0.162 Sum_probs=354.9
Q ss_pred EEEcCCCCEEE-EE--EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-ccc--ccCCCCee
Q 007076 70 GLFDESGKLLG-SA--SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL--VDADGSPV 143 (619)
Q Consensus 70 ~l~d~~g~il~-~~--~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~--vd~~G~pl 143 (619)
+-+|.+|+.+. +. +.++.....+++.+|||+.||+++.++++++... ..+|.+||||+| +++ ||++|+||
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL 78 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV 78 (471)
T ss_pred eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence 34665554443 22 3333334478899999999999999999888653 467999999998 554 49999999
Q ss_pred eecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccceeeechhHHHhh
Q 007076 144 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 221 (619)
Q Consensus 144 ~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~ 221 (619)
+|+|+|+|.|+.++++++.+.. ++++++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+
T Consensus 79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~ 149 (471)
T PRK10640 79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR 149 (471)
T ss_pred ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence 8999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCCccCCCccHHH
Q 007076 222 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA 301 (619)
Q Consensus 222 LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~ 301 (619)
|||+.. ++.|. +++|++||+++++||+++|+.+||+..+ || +++++++++|. ++++
T Consensus 150 LTG~~~-~d~s~--------------as~t~l~d~~~~~W~~ell~~~Gi~~~~---LP----~lv~~~~~~G~-v~~~- 205 (471)
T PRK10640 150 LTGKMN-WEYTN--------------ATTTQLVNINSDDWDESLLAWSGAPKAW---FG----RPTHPGNVIGH-WICP- 205 (471)
T ss_pred HhCCcc-eeecH--------------hhhccccCCCcCCcCHHHHHHcCCCHHH---cC----CCcCCCcccee-eecc-
Confidence 999975 34443 5578899999999999999999999743 36 68899999996 7765
Q ss_pred HHHcCCCCCCcEEE-ccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccCCc-cccccc
Q 007076 302 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS 379 (619)
Q Consensus 302 a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~~-~~~~~~ 379 (619)
+| .|+||++ |+||++|+++|+ |...+ +++++++|||+++..++++|..++.. ...+.+
T Consensus 206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~ 265 (471)
T PRK10640 206 ---QG--NEIPVVAVASHDTASAVIAS-PLNDS--------------DAAYLSSGTWSLMGFESQTPFTNDTALAANITN 265 (471)
T ss_pred ---cC--CCCCEEEeCCCcHHHHhhcc-CCCCC--------------CeEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence 35 6899998 699999999998 55533 68999999999988888877654422 111111
Q ss_pred -cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCC
Q 007076 380 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 458 (619)
Q Consensus 380 -~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G 458 (619)
...++.|.++..+. | +|+++++...+ +...|+.+.+++++ + ++++|++ +| .|
T Consensus 266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a~~------~----~g~~gli-~p--~g 318 (471)
T PRK10640 266 EGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QITDLPALIAATAA------L----PACRFLI-NP--ND 318 (471)
T ss_pred cCCCCceEEEecchh--H---HHHHHHHHHHh---------ccCCHHHHHHHHHh------C----CCCCcee-CC--Cc
Confidence 23466676665332 3 89998764311 12346666655543 2 2678886 68 69
Q ss_pred CCCCCCCC-CCcEeEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHH
Q 007076 459 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 530 (619)
Q Consensus 459 ~r~P~~d~-~a~g~~~Gl~~~~------~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Q 530 (619)
+|. ||| ++||+|+|++.+| ++.|+. ||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus 319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~---RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Q 393 (471)
T PRK10640 319 DRF--INPPSMCSEIQAACRETAQPVPESDAELA---RCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQ 393 (471)
T ss_pred ccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHH
Confidence 994 786 8999998877776 888864 599999999999999999874 677899999999999999999
Q ss_pred HHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhc---CCeEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007076 531 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606 (619)
Q Consensus 531 i~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~---~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~ 606 (619)
|+||++|+||++... |++++|||++|++++|.|++++++ +.+.. ..++|+| |++ ..++++|..|+++|+.
T Consensus 394 i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P--~~~--~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 394 LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTP--NPD--SEIARHVAQFQSLRQT 466 (471)
T ss_pred HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcC--CCh--HHHHHHHHHHHHHhcc
Confidence 999999999987664 899999999999999999999886 55555 5789999 665 6788899999999875
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=9.4e-47 Score=380.13 Aligned_cols=239 Identities=38% Similarity=0.688 Sum_probs=212.4
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (619)
|+||||+|||++|++|+|++|+++...+++++... .+|+.||||++||+++++++++++++.+.+..+|.+|+|++| +
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 69999999999999999999999999999998765 789999999999999999999999998778899999999998 5
Q ss_pred cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076 134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 209 (619)
Q Consensus 134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 209 (619)
++ +|++|+|+ +|+++|+|.|+.++++++++.. +++++.||.++++.++++||+|+++|+|++|++++
T Consensus 81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 151 (245)
T PF00370_consen 81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA 151 (245)
T ss_dssp EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence 54 49999999 8999999999999999998864 78899999999999999999999999999999999
Q ss_pred eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076 210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289 (619)
Q Consensus 210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~ 289 (619)
+|++++|||.|+|||+.. ++.| ++++||+||+++++|++++++.+||+..+ || +++++
T Consensus 152 ~~~~~~dyl~~~LtG~~~-~d~s--------------~as~tgl~d~~~~~w~~~~l~~~gi~~~~---lP----~i~~~ 209 (245)
T PF00370_consen 152 KFLTLSDYLAYKLTGRAA-TDYS--------------NASRTGLYDIRTGQWDEELLEALGIPEEL---LP----EIVPP 209 (245)
T ss_dssp EEEEHHHHHHHHHHSC-E-EEHH--------------HHCTSSSEETTTTEE-HHHHHHTTSGGGG---SC----EEE-T
T ss_pred hcccHHHHHHhhcccccc-cccc--------------chhccccccccccccCHHHHHhhCCChhh---CC----cEecC
Confidence 999999999999999874 2333 25678899999999999999999999854 36 78899
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhc
Q 007076 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 326 (619)
Q Consensus 290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg 326 (619)
|+++|+ +++++|+++||++|+||++|+||++|+++|
T Consensus 210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 999997 999999999999999999999999999986
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-43 Score=355.34 Aligned_cols=487 Identities=17% Similarity=0.143 Sum_probs=357.7
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc----cc-CCC-------ccccCHH-HHHHHHHHHHHHHHHHcCCCC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WK-EGD-------CIEQSST-DIWHAICAAVDSACSLANVDG 121 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~----~~-~~g-------~~e~dp~-~~~~~~~~~l~~~~~~~~~~~ 121 (619)
..+||+|++|+.+|++++|++.+|+++....+.. +. .+| ..-..|- .|.+|+.-++.+ +.+.+.+.
T Consensus 9 ~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~k-l~~~~~d~ 87 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDK-LREAGFDL 87 (545)
T ss_pred ceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHH-HHHcCCCH
Confidence 3599999999999999999999999998777642 21 121 2233455 666665555544 45567777
Q ss_pred CCEEEEEEcCc-cccc--cCCC-CeeeecCC----------CCCCccceeecccccHHHHHHHHccc---hhHHhhhCCC
Q 007076 122 EEVKGVGFAAT-CSLV--DADG-SPVSVSWN----------GDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGA 184 (619)
Q Consensus 122 ~~I~aIgis~~-~~~v--d~~G-~pl~~~~~----------~~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG~~ 184 (619)
.+|.||+-++| ||.| .+.+ +.|..+-. .+.......|+|..+..+|+++.... .++.++||.+
T Consensus 88 ~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSR 167 (545)
T KOG2531|consen 88 SKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSR 167 (545)
T ss_pred HHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcch
Confidence 89999999887 7754 3332 22322200 12223455799999999999998874 6788999999
Q ss_pred CCCCChHHHHHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHH
Q 007076 185 VSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDE 264 (619)
Q Consensus 185 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ 264 (619)
.+..|+.++|+-+.+.+||+|+++.++-.+++|+...|-|..+..|.|++| +++|+||+++.||.+
T Consensus 168 Ay~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgs--------------GMNL~dIr~k~ws~~ 233 (545)
T KOG2531|consen 168 AYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGS--------------GMNLLDIRKKKWSKA 233 (545)
T ss_pred hhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceeccccc--------------CchHHHHhhhhhhHH
Confidence 999999999999999999999999999999999999999998766777654 446889999999999
Q ss_pred HHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhh
Q 007076 265 FWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEE 344 (619)
Q Consensus 265 ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g 344 (619)
+|+.+- +.+. .+|+ ..+++-.+.|+ |.+.+.+++|++++|.|+.-.||+++++.|. -..
T Consensus 234 ~L~~~a--pdL~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL-~l~------------- 292 (545)
T KOG2531|consen 234 LLDACA--PDLE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL-PLR------------- 292 (545)
T ss_pred HHhhhC--hhHH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc-ccc-------------
Confidence 999975 2233 3444 45677789997 9999999999999999999999999999987 332
Q ss_pred cccCeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHH
Q 007076 345 AICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLF 424 (619)
Q Consensus 345 ~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~ 424 (619)
++++.+|+|||..+...++++.+.+.. ..|++.+.+..|+.+-+..||+.+-+-+++.. ...+|
T Consensus 293 --~~dl~iSLGTSdTv~m~t~~~~p~~eg-Hvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~-------------~~~sW 356 (545)
T KOG2531|consen 293 --PGDLLISLGTSDTVFMVTKEYHPSPEG-HVFCHPTDPNHYMGMLCFKNGSLTRERIRNES-------------ANGSW 356 (545)
T ss_pred --CCceEEEecCcceEEEEcCCCCCCCCc-ceeccCCCccceEEEEEecCChHHHHHHhhcc-------------cCCCH
Confidence 368999999999999999988766643 34666677889999999999888877776532 23578
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCC-CCcEeEE---------cCCCCCCHHHHHHHHHHHHHH
Q 007076 425 ELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP-KSKGIIC---------GMTLDSSEKQLALLYLATVQG 494 (619)
Q Consensus 425 ~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~-~a~g~~~---------Gl~~~~~~~~l~~~~rAvlEg 494 (619)
+.|++.+...+ .|.+|.+=+=|=.+|-.|-.-. ..|=.+- ++....+|..- .||++||
T Consensus 357 d~Fne~L~~t~---------~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e---~rAlvEg 424 (545)
T KOG2531|consen 357 DKFNEILDSTP---------SGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEIE---ARALVEG 424 (545)
T ss_pred HHHHHHhccCc---------CCCCCceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchHH---HHHHHHH
Confidence 88988776532 4556543221223455551100 0010111 33333335554 4699999
Q ss_pred HHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC-CHH----H
Q 007076 495 IAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLI----E 569 (619)
Q Consensus 495 iaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~-~~~----~ 569 (619)
.++..|...+.|.-...+.++|+++||.|+|+.+.|++|||||.||++.+..+++|+|+|+-|+++.-... ... .
T Consensus 425 Q~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~ 504 (545)
T KOG2531|consen 425 QFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSN 504 (545)
T ss_pred hHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhcccccccccee
Confidence 99999988877653334789999999999999999999999999999999999999999999998752111 000 0
Q ss_pred HHH--Hh--hcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 007076 570 AMK--AM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 607 (619)
Q Consensus 570 a~~--~~--~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~ 607 (619)
-.. .+ .+.+...+| ++...+.|..+.++|.++.+.+
T Consensus 505 ~~~~~~~~p~~~~L~~~p--~~~~~e~Y~~ll~~~~e~e~~l 544 (545)
T KOG2531|consen 505 KTNYLSLTPSKLELACEP--DSANWEIYGPLLKRLSELEDTL 544 (545)
T ss_pred eccccccCCccceeeecC--CcchHHHHHHHHHHHHHHHHhh
Confidence 000 01 123445678 7788889999988888877653
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.98 E-value=7.6e-32 Score=262.69 Aligned_cols=196 Identities=34% Similarity=0.561 Sum_probs=158.2
Q ss_pred EEEEecccceeeeeeccccc-cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076 350 MVLVCGTSTCHMAVSRNKLF-IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 428 (619)
Q Consensus 350 ~~~~~GTs~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~ 428 (619)
+.+++|||+++...+++|+. .++.+.++.++..++.|+++++.+++|.+++|+++.+.....+.+ ..+.++.+.
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~-----~~~~~~~~~ 75 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSD-----EEEIYEDLA 75 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSS-----TTHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhh-----hhhccchHH
Confidence 35799999999998888873 344555554444578899999999999999999998621111000 000122222
Q ss_pred HHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007076 429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508 (619)
Q Consensus 429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~ 508 (619)
...+.. . ++++++++|+|+|.|+|+|+||++++|+|+|++.+|++.++ +||++||++|.++++++.|++
T Consensus 76 ~~~~~~-----~---~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~~~~~~~~l~~ 144 (198)
T PF02782_consen 76 ELEAAA-----S---PPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFSLRQILEELEE 144 (198)
T ss_dssp HHHHHH-----T---SSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----c---cCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHHHHHhhhhccc
Confidence 211111 1 24689999999999999999999999999999999998886 569999999999999999998
Q ss_pred C-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhc
Q 007076 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 509 ~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
. +.++++|+++||+++|++|+|++||++|+||++++..|++|+|||++|++++
T Consensus 145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 7 8999999999999999999999999999999999999999999999999874
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.24 E-value=1.5e-09 Score=109.53 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=61.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-EEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccch
Q 007076 474 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLL 551 (619)
Q Consensus 474 Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~al 551 (619)
.+....++++++ +++++++++.+..++..+ .++ +|+++||+++|+.|.|.+++.++.||.+++.++ .+|+
T Consensus 172 ~l~~g~~~~di~---~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~Al 243 (248)
T TIGR00241 172 LLAAGVKKEDIL---AGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAV 243 (248)
T ss_pred HHHCCCCHHHHH---HHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHH
Confidence 344455677765 599999999999866533 244 799999999999999999999999999999885 8999
Q ss_pred HHHHH
Q 007076 552 GAAIL 556 (619)
Q Consensus 552 GAAll 556 (619)
|||++
T Consensus 244 GaAl~ 248 (248)
T TIGR00241 244 GAALL 248 (248)
T ss_pred HHHhC
Confidence 99974
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.63 E-value=3.9e-07 Score=94.59 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh-----CCceeecCCCC-cc
Q 007076 476 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-SV 549 (619)
Q Consensus 476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-----g~pV~~~~~~e-~~ 549 (619)
.....++|++. ++..+++-.+..++. +.+...+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ .+
T Consensus 351 a~G~~reDIaA---GL~~SIA~Rv~s~l~---r~~~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~G 424 (432)
T TIGR02259 351 ALGDKREDILA---GLHRAIILRAISIIS---RSGGITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTG 424 (432)
T ss_pred HCCCCHHHHHH---HHHHHHHHHHHHHHh---cccCCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHH
Confidence 34456778764 888888865554443 33222357999999999999999999999 57888887665 78
Q ss_pred chHHHHHH
Q 007076 550 LLGAAILG 557 (619)
Q Consensus 550 alGAAllA 557 (619)
|+|||+.|
T Consensus 425 ALGAAL~a 432 (432)
T TIGR02259 425 ALGASEFA 432 (432)
T ss_pred HHHHHHhC
Confidence 99999875
No 26
>PRK09698 D-allose kinase; Provisional
Probab=98.01 E-value=4.7e-05 Score=79.15 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=59.7
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
.|++|||+|.|+++++++|.+|+++.+.+.+++. ..+++. .+.+.+.+++++++.+ .+|.+|||+. +|
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~-pG 71 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGF-PA 71 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeC-Cc
Confidence 6799999999999999999999999887776651 223343 7777888888877642 5799999976 88
Q ss_pred cccCC-CCee
Q 007076 135 LVDAD-GSPV 143 (619)
Q Consensus 135 ~vd~~-G~pl 143 (619)
++|.+ |..+
T Consensus 72 ~vd~~~g~i~ 81 (302)
T PRK09698 72 LVSKDRRTVI 81 (302)
T ss_pred ceeCCCCEEE
Confidence 99876 4444
No 27
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.00 E-value=5e-05 Score=79.39 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=59.9
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
.+++|||||.|++|++++|.+|+++...+.+++ ...+.+.+.+.+.+.+++++...+ ...++.+||+++ ++
T Consensus 6 ~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~~-pg 76 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLDGEILLRERIPTP-------TPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIPG-PG 76 (314)
T ss_pred cEEEEEEecCCEEEEEEECCCCcEEEEEEEecC-------CCCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEecc-ce
Confidence 579999999999999999999999999988887 233345888888899988887653 334577777755 66
Q ss_pred cccCCC
Q 007076 135 LVDADG 140 (619)
Q Consensus 135 ~vd~~G 140 (619)
.+|...
T Consensus 77 ~~~~~~ 82 (314)
T COG1940 77 DVDNGT 82 (314)
T ss_pred eccCCc
Confidence 665544
No 28
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.94 E-value=5.8e-05 Score=76.52 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=56.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV 136 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v 136 (619)
++|||||.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+++++.... ...+.+|||+. +|++
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~----~~~~~gIgv~~-pG~v 68 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTY----CGVQGSVGIGI-PGLP 68 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhh----cCCCceEEEEe-cCcE
Confidence 7999999999999999999999988777665 346777888887777766432 23345888876 8889
Q ss_pred cCC-CCee
Q 007076 137 DAD-GSPV 143 (619)
Q Consensus 137 d~~-G~pl 143 (619)
|.+ |...
T Consensus 69 d~~~g~i~ 76 (256)
T PRK13311 69 NADDGTVF 76 (256)
T ss_pred ECCCCEEE
Confidence 876 5543
No 29
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.93 E-value=6.2e-05 Score=78.83 Aligned_cols=87 Identities=28% Similarity=0.433 Sum_probs=68.5
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccccc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVD 137 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~vd 137 (619)
||||+|.|+++++++|.+|+++...+.+.+ .+++++.+.+.+.+++++++.+....+|.+|||+. +|++|
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-pG~vd 70 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-PGPVN 70 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-ccccc
Confidence 589999999999999999999887665443 36788899999999999887766667899999976 88898
Q ss_pred CC-CCeeeecCCCCCCccceeecccc
Q 007076 138 AD-GSPVSVSWNGDSRRNIIVWMDHR 162 (619)
Q Consensus 138 ~~-G~pl~~~~~~~~~~p~i~W~D~R 162 (619)
.+ |.... .|.+.|.+..
T Consensus 71 ~~~g~~~~--------~~~~~w~~~~ 88 (318)
T TIGR00744 71 RQRGTVYF--------AVNLDWKQEP 88 (318)
T ss_pred CCCCEEEe--------cCCCCCCCCC
Confidence 65 66443 4555686643
No 30
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.82 E-value=8.2e-05 Score=70.91 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=69.5
Q ss_pred EEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccccC
Q 007076 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDA 138 (619)
Q Consensus 59 gIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~vd~ 138 (619)
|||||+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..+.+. . +|||+. +|+||.
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~----~-gIgi~~-pG~v~~ 65 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGR----S-GIGISV-PGIVDS 65 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTC----E-EEEEEE-SSEEET
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhccc----c-cEEEec-cccCcC
Confidence 79999999999999999999998877764 67899999999999999887532 2 888865 889977
Q ss_pred C-CCeeeecCCCCCCccceeecccccHHHHH
Q 007076 139 D-GSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168 (619)
Q Consensus 139 ~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~ 168 (619)
+ |..+. .|...|.+..-.+..+
T Consensus 66 ~~g~i~~--------~~~~~~~~~~l~~~l~ 88 (179)
T PF00480_consen 66 EKGRIIS--------SPNPGWENIPLKEELE 88 (179)
T ss_dssp TTTEEEE--------CSSGTGTTCEHHHHHH
T ss_pred CCCeEEe--------cCCCCcccCCHHHHhh
Confidence 6 56664 5777788866554443
No 31
>PRK09557 fructokinase; Reviewed
Probab=97.81 E-value=0.00013 Score=75.72 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV 136 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v 136 (619)
.||||+|.|+++++++|.+|+++.+.+.+++ .++++++.+.+.+.++++.... ..+.+|||+. +|+|
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~-pG~v 68 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI-PGSI 68 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-cccC
Confidence 7999999999999999999999987766654 2467788888888887776542 3567899966 8899
Q ss_pred cCC-CCee
Q 007076 137 DAD-GSPV 143 (619)
Q Consensus 137 d~~-G~pl 143 (619)
|.+ |..+
T Consensus 69 d~~~g~i~ 76 (301)
T PRK09557 69 SPYTGLVK 76 (301)
T ss_pred cCCCCeEE
Confidence 865 6654
No 32
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.81 E-value=0.00013 Score=75.95 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=57.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV 136 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v 136 (619)
++|||||.|+++++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++.... ..+.+|||+. +|+|
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~-pG~v 68 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIGI-PGMP 68 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeC-CCcc
Confidence 7999999999999999999999987766654 3467888888888888775432 2345788876 8899
Q ss_pred cCC-CCee
Q 007076 137 DAD-GSPV 143 (619)
Q Consensus 137 d~~-G~pl 143 (619)
|.+ |...
T Consensus 69 d~~~g~~~ 76 (303)
T PRK13310 69 ETEDGTLY 76 (303)
T ss_pred cCCCCEEe
Confidence 865 6543
No 33
>PRK13317 pantothenate kinase; Provisional
Probab=97.60 E-value=0.0017 Score=66.27 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCCcEeEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEec-CCcCCHHHHHHHHhhh-
Q 007076 464 ADPKSKGIICG-----MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII- 536 (619)
Q Consensus 464 ~d~~a~g~~~G-----l~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~G-G~a~s~~~~Qi~Advl- 536 (619)
...+.+.+.|| +.....++|+++ +++..++..+..+.-.+.+. ..+++|+++| |.++|+.+++.+++.+
T Consensus 173 l~i~s~csvFakv~~l~~~g~~~eDIaa---sl~~~v~~~I~~lA~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~ 248 (277)
T PRK13317 173 IPGDLTASNFGKVLHHLDSEFTSSDILA---GVIGLVGEVITTLSIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTK 248 (277)
T ss_pred CCCceeEehhhhhhhhhccCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHh
Confidence 34566666655 334456888765 99999988777664433332 2446899999 6899999999999998
Q ss_pred --CCceeecCCCC-ccchHHHHHHH
Q 007076 537 --GCPIILPRENE-SVLLGAAILGA 558 (619)
Q Consensus 537 --g~pV~~~~~~e-~~alGAAllA~ 558 (619)
+.++.+++.++ .+|+|||+.|.
T Consensus 249 ~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 249 LRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCceEEecCCCchhHHHHHHHHhh
Confidence 78888887655 88999999874
No 34
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.30 E-value=0.00078 Score=57.40 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=42.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV 136 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v 136 (619)
+||||+|+|.+|++++|.+|+++...+.+.. .+.+.+++.+.+.+ ++ .++.+|||+. +|.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~---------~~~~~~~~~l~~~i----~~-----~~~~~i~Ig~-pg~v 63 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPR---------TNKEADAARLKKLI----KK-----YQPDLIVIGL-PLNM 63 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEe---------cCcchHHHHHHHHH----HH-----hCCCEEEEeC-CcCC
Confidence 7999999999999999999998876655432 12344555554444 33 2466888865 6665
No 35
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.26 E-value=0.0017 Score=67.15 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=52.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV 136 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v 136 (619)
++|||||.|+++++++|.+|+++.+.+.+++ ...+++++.+.+.+.++++.. ++.+|||+. +|+|
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~-------~~~~igi~~-pG~v 67 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP-------ASQTPEALRQALSALVSPLQA-------QADRVAVAS-TGII 67 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC-------CCCCHHHHHHHHHHHHHHhhh-------cCcEEEEeC-cccc
Confidence 7999999999999999999999987776665 134567777777777766532 356889876 8888
Q ss_pred cCC
Q 007076 137 DAD 139 (619)
Q Consensus 137 d~~ 139 (619)
|..
T Consensus 68 d~~ 70 (291)
T PRK05082 68 NDG 70 (291)
T ss_pred cCC
Confidence 743
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.15 E-value=0.00098 Score=67.84 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCC-CCccchHHH
Q 007076 477 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGAA 554 (619)
Q Consensus 477 ~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~-~e~~alGAA 554 (619)
....++|++. ++.++++-.+. ..+++.++ -+.|.++||.++|+.+.+.+.+.|+++|. ++.. ....|+|||
T Consensus 211 ~G~~~edI~a---Gl~~sia~rv~---~~~~~~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAA 283 (293)
T TIGR03192 211 AGYTKNMVIA---AYCQAMAERVV---SLLERIGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAA 283 (293)
T ss_pred CCCCHHHHHH---HHHHHHHHHHH---HHhcccCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHH
Confidence 3445777654 88888885543 33333332 24699999999999999999999999998 4443 348899999
Q ss_pred HHHHh
Q 007076 555 ILGAV 559 (619)
Q Consensus 555 llA~~ 559 (619)
++|..
T Consensus 284 L~A~~ 288 (293)
T TIGR03192 284 LFGYT 288 (293)
T ss_pred HHHHH
Confidence 99853
No 37
>PRK00292 glk glucokinase; Provisional
Probab=97.15 E-value=0.0012 Score=69.11 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=45.1
Q ss_pred CeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|+||||||+|++|++++| .+++++...+.+++ +. +.+.+.+.+++++. ...++.+|||+. +
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~----------~~----~~~~~~l~~~l~~~--~~~~~~gigIg~-p 64 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA----------DY----PSLEDAIRAYLADE--HGVQVRSACFAI-A 64 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC----------CC----CCHHHHHHHHHHhc--cCCCCceEEEEE-e
Confidence 4799999999999999999 45666666555443 11 12444455555431 123688899976 8
Q ss_pred ccccCC
Q 007076 134 SLVDAD 139 (619)
Q Consensus 134 ~~vd~~ 139 (619)
|+||.+
T Consensus 65 G~vd~~ 70 (316)
T PRK00292 65 GPVDGD 70 (316)
T ss_pred CcccCC
Confidence 899754
No 38
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.0014 Score=66.34 Aligned_cols=72 Identities=29% Similarity=0.343 Sum_probs=56.1
Q ss_pred CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
|+++|+||||-|+|+++++|.|.+|+++......-.. ...++ ++-+..+.+++.+++.+++.++++|..+..
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN------~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a 74 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN------IQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIVA 74 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce------ecccchHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence 3457999999999999999999999999876443211 23445 888899999999999888877777655433
No 39
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.05 E-value=0.0019 Score=65.79 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=45.7
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+++|||+|+|++|++|+|+ ++++.....++. .+|. +...+++++++++.+....+|..+++++.
T Consensus 33 ~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TGy 96 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTGY 96 (293)
T ss_pred EEEEEEeCchhEEEEEEeC-CEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEECc
Confidence 6999999999999999994 566655444332 2332 24566777777777766678998888774
No 40
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.03 E-value=0.0024 Score=67.67 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHHH
Q 007076 479 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG 557 (619)
Q Consensus 479 ~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAllA 557 (619)
..++|++. ++..+++-++.. ..+++.++ -+.|+++||.++|+.+...+.+.+|.+|.+++.++ .+|+|||++|
T Consensus 328 ~~~eDIaA---Gl~~SIa~rv~~--~l~~~~~i-~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 328 ASPEDVAA---AACHSVAEQVYE--QQLQEIDV-REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred CCHHHHHH---HHHHHHHHHHHH--HHhhcCCC-CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 45788765 899998865553 12333322 24599999999999999999999999999998776 7799999997
Q ss_pred H
Q 007076 558 A 558 (619)
Q Consensus 558 ~ 558 (619)
.
T Consensus 402 ~ 402 (404)
T TIGR03286 402 S 402 (404)
T ss_pred c
Confidence 3
No 41
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.99 E-value=0.0027 Score=63.73 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Cc----eeecCCC-Cccch
Q 007076 478 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPREN-ESVLL 551 (619)
Q Consensus 478 ~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~p----V~~~~~~-e~~al 551 (619)
...++|++. ++..+++-.+..++. +.+...++|.++||.++|+.+.+.+.+.++ .+ |.+++.+ ...|+
T Consensus 183 G~~~edI~a---Gl~~sia~r~~~~~~---~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAl 256 (262)
T TIGR02261 183 GISAPNILK---GIHESMADRLAKLLK---SLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAI 256 (262)
T ss_pred CCCHHHHHH---HHHHHHHHHHHHHHh---ccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHH
Confidence 345777654 899998865544443 433334569999999999999999999884 23 3333333 47799
Q ss_pred HHHHHH
Q 007076 552 GAAILG 557 (619)
Q Consensus 552 GAAllA 557 (619)
|||++|
T Consensus 257 GAAl~~ 262 (262)
T TIGR02261 257 GAALWG 262 (262)
T ss_pred HHHHcC
Confidence 999874
No 42
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.83 E-value=0.0033 Score=66.58 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.6
Q ss_pred EcccccchhHHHHHHHHhh
Q 007076 388 TEGGQSATGALLDYIIENH 406 (619)
Q Consensus 388 ~~g~~~~~G~~l~W~~~~~ 406 (619)
+.-|...+|..|+-+.+.+
T Consensus 269 NdkCAAGTGrFLE~~A~~L 287 (404)
T TIGR03286 269 GGICAGASGRFLEMTAKRL 287 (404)
T ss_pred cCcccccCcHHHHHHHHHh
Confidence 3345556788887665544
No 43
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.83 E-value=0.0033 Score=72.35 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAl 555 (619)
++.++..+...+++-+.-.+++ .|++.+. .++.|+++||+++.|.+.+++.++||.++. .....|+.|+|||+
T Consensus 296 tR~~FE~l~~~l~~r~~~~i~~---~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi 372 (668)
T PRK13410 296 DRKQFESLCGDLLDRLLRPVKR---ALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAI 372 (668)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHH
Confidence 4555544444444444333333 3344454 578999999999999999999999998654 34566799999999
Q ss_pred HHHhhccc
Q 007076 556 LGAVAAKR 563 (619)
Q Consensus 556 lA~~~~G~ 563 (619)
.|+...+.
T Consensus 373 ~aa~ls~~ 380 (668)
T PRK13410 373 QAGILAGE 380 (668)
T ss_pred HHHhhccc
Confidence 99986664
No 44
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.83 E-value=0.0027 Score=64.95 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=52.4
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (619)
||||.|+|++|++|+|.+|+++.+....-.. ....+.+...+.+.+++.+++++.+....+|..+.++
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n-----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN-----YNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT-----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC-----CCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 7999999999999999999988766443211 1224567888899999999999888777777776553
No 45
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.82 E-value=0.0036 Score=64.87 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHH
Q 007076 476 TLDSSEKQLALLYLATVQGIAYGTRHIVE-HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGA 553 (619)
Q Consensus 476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~-~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGA 553 (619)
....+++|+.. ++.++++-++ +. .+.+..+. +.|++.||.+.|..+...+.+.+|++|.+|+.++ ..|+||
T Consensus 312 ~~G~~~EdI~A---Gl~~Sv~~~v---~~~~~~~~~i~-~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGA 384 (396)
T COG1924 312 AEGASPEDILA---GLAYSVAENV---AEKVIKRVDIE-EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGA 384 (396)
T ss_pred HcCCCHHHHHH---HHHHHHHHHH---HHHHhhccCCC-CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHH
Confidence 34456677654 7777777433 33 23332222 2399999999999999999999999999998666 789999
Q ss_pred HHHHHh
Q 007076 554 AILGAV 559 (619)
Q Consensus 554 AllA~~ 559 (619)
|++|..
T Consensus 385 AL~a~~ 390 (396)
T COG1924 385 ALIAKE 390 (396)
T ss_pred HHHHhh
Confidence 999853
No 46
>CHL00094 dnaK heat shock protein 70
Probab=96.80 E-value=0.0036 Score=71.69 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=49.3
Q ss_pred HHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHHhhccccC
Q 007076 505 HCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGAVAAKRYS 565 (619)
Q Consensus 505 ~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~~~~G~~~ 565 (619)
.|++.++ .++.|+++||.++.|.+.++++++||.++... ...|+.|+|||+.|+...|.++
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 318 ALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred HHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 3444454 67899999999999999999999999877543 4566899999999998776543
No 47
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.70 E-value=0.0035 Score=59.63 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=58.4
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc---c
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC---S 134 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~---~ 134 (619)
||||+|+|.+-++++|.+.+++...+.++. |++....+.+++++++...+.++.+|..|-++++. .
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA 70 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA 70 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence 799999999999999988788888777653 45566778888888888777778899999998863 2
Q ss_pred cccCCCCee
Q 007076 135 LVDADGSPV 143 (619)
Q Consensus 135 ~vd~~G~pl 143 (619)
++..+|.++
T Consensus 71 l~e~~g~~v 79 (176)
T PF05378_consen 71 LLERKGARV 79 (176)
T ss_pred HHhccCCCc
Confidence 445555444
No 48
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.69 E-value=0.0042 Score=62.40 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=44.6
Q ss_pred eEEEEEcCCcceEEEEEcCCCCE-EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~i-l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+++|||+|+|++|++|+|.+++. .......++. ...+| .+...+++++++++.++...+|..|+.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TG 69 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI------RQRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTG 69 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC------CCCCH---HHHHHHHHHHHHHHcCCChhheEEEEEEC
Confidence 58999999999999999965542 2222222221 02233 23456677788777776667899888876
No 49
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.61 E-value=0.006 Score=65.46 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=50.9
Q ss_pred eEEEEEcCCcceEEEEEc-CCCCEEEEEEeeccccc-CCC------ccc------cCHHHHHHHHHHHHHHHHHHcCCCC
Q 007076 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIE------QSSTDIWHAICAAVDSACSLANVDG 121 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~-~~g------~~e------~dp~~~~~~~~~~l~~~~~~~~~~~ 121 (619)
|-++||||||.+.+.++| .+|++++..+...|... ..+ +.. +=-..+.+.+.+++++++++.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 678999999999999999 58999999988877542 221 112 1123455666666667777778889
Q ss_pred CCEEEEEEcC
Q 007076 122 EEVKGVGFAA 131 (619)
Q Consensus 122 ~~I~aIgis~ 131 (619)
++|..|.|++
T Consensus 82 ~~I~~i~i~G 91 (412)
T PF14574_consen 82 EDIYEIVIVG 91 (412)
T ss_dssp GGEEEEEEEE
T ss_pred HHeEEEEEEe
Confidence 9999999987
No 50
>PRK13321 pantothenate kinase; Reviewed
Probab=96.61 E-value=0.0056 Score=62.06 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=44.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|+||||.|++|.++||.+ +++...+.+++ ...+++++...+.+.++ +.+.+..+|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~l~~----~~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLSLFR----HAGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHHHHH----HcCCChhhCCeEEEEe
Confidence 6899999999999999944 77776666655 23455666666555554 3333445799999976
No 51
>PRK12408 glucokinase; Provisional
Probab=96.59 E-value=0.003 Score=66.64 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=42.0
Q ss_pred eEEEEEcCCcceEEEEEcCCCCE------EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 56 VFLGVDVGTGSARAGLFDESGKL------LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~i------l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
++|++|||+|++|.+++|++|++ +...+.+++ +. +.+.+.+++++++ ..++.+|||
T Consensus 17 ~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~----------~~----~~~~~~i~~~~~~----~~~~~~igI 78 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA----------DY----PSLAAILADFLAE----CAPVRRGVI 78 (336)
T ss_pred cEEEEEcChhhhheeEEeccCCccccccccceeEecCC----------Cc----cCHHHHHHHHHhc----CCCcCEEEE
Confidence 48999999999999999987763 333222222 11 1233445555543 135788888
Q ss_pred cCcccc-ccCCCCee
Q 007076 130 AATCSL-VDADGSPV 143 (619)
Q Consensus 130 s~~~~~-vd~~G~pl 143 (619)
+. +|+ ++ +|..+
T Consensus 79 g~-pG~~~~-~g~v~ 91 (336)
T PRK12408 79 AS-AGYALD-DGRVI 91 (336)
T ss_pred Ee-cCCceE-CCEEE
Confidence 76 676 32 46555
No 52
>PRK13318 pantothenate kinase; Reviewed
Probab=96.58 E-value=0.0073 Score=61.28 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=44.2
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|+||||.|++|.+++| +|+++...+.+++ ....++++.. .++++++..+.+..+|.+|+||+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~-------~~~~~~~~~~----~l~~l~~~~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD-------SRRTADEYGV----WLKQLLGLSGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC-------CCCCHHHHHH----HHHHHHHHcCCCcccCceEEEEE
Confidence 78999999999999999 6888877666654 1233444443 44555555444445789999976
No 53
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.56 E-value=0.0052 Score=70.69 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=48.3
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (619)
.+||||||+|++|++++|++|+++...+.+++. ++.+.+.+++++++.+. .++.+|||+. +|+
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igig~-pGp 81 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAIAI-ANP 81 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEEEE-ecC
Confidence 389999999999999999999987776555531 12345556666654332 3588999976 889
Q ss_pred ccCC
Q 007076 136 VDAD 139 (619)
Q Consensus 136 vd~~ 139 (619)
||.+
T Consensus 82 Vd~~ 85 (638)
T PRK14101 82 VDGD 85 (638)
T ss_pred ccCC
Confidence 9755
No 54
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.55 E-value=0.0054 Score=61.48 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCC-CccchHHHH
Q 007076 484 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI 555 (619)
Q Consensus 484 l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-e~~alGAAl 555 (619)
+..+...+++.+.-.+++.++ + .+++.|+++||+|+.+.+.+++.+.||.||.++..+ +++|+|||+
T Consensus 171 ~~~~i~~~~~~i~~~i~~~l~---~--~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 171 IFPVVKPVYQKMASIVKRHIE---G--QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---h--CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 333445666666666655554 2 356799999999999999999999999999887755 588999986
No 55
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.54 E-value=0.0074 Score=69.21 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~e~~alGAAl 555 (619)
++.++..+...+++-+.-.+++ .|++.++ .++.|+++||.+|-|.+.+++.++||. |+......|+.|+|||+
T Consensus 321 tR~efe~l~~~l~~r~~~~v~~---~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi 397 (657)
T PTZ00186 321 SRSKFEGITQRLIERSIAPCKQ---CMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAAT 397 (657)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHH
Confidence 5666655555555555443433 3444443 578999999999999999999999997 55555677899999999
Q ss_pred HHHhhcc
Q 007076 556 LGAVAAK 562 (619)
Q Consensus 556 lA~~~~G 562 (619)
.|+.-.+
T Consensus 398 ~a~~l~~ 404 (657)
T PTZ00186 398 LGGVLRG 404 (657)
T ss_pred HHHHhcc
Confidence 9986544
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.48 E-value=0.0089 Score=62.03 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 50 PARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 50 ~~m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
+.|...++||||.|+|.+|++|.+++..+.......++ -.|. ..+++++++++.+....+|.++|+
T Consensus 130 ~~~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~---------g~p~-----~~~~l~~~le~l~~~~~~I~~~~~ 195 (396)
T COG1924 130 REYQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK---------GRPI-----AEKALKEALEELGEKLEEILGLGV 195 (396)
T ss_pred hhhcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC---------CChh-----HHHHHHHHHHHcccChheeeeeee
Confidence 56677889999999999999999877756554433332 1222 245666777776666689999999
Q ss_pred cCc
Q 007076 130 AAT 132 (619)
Q Consensus 130 s~~ 132 (619)
++.
T Consensus 196 TGY 198 (396)
T COG1924 196 TGY 198 (396)
T ss_pred ecc
Confidence 885
No 57
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.45 E-value=0.009 Score=60.92 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHH
Q 007076 482 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 556 (619)
Q Consensus 482 ~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAll 556 (619)
.++..+.+..+|-+.-.+++.++ + ..++.|+++||+|+-+.+.+++++.||.||.++..++ .+|+|+|+.
T Consensus 196 ~~~~~ii~~~~~~i~~~i~~~l~---~--~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 196 KEIFPVVKPVVEKMASIVARHIE---G--QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---c--CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 34444455666666555555443 2 3678999999999999999999999999999888665 889999975
No 58
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.45 E-value=0.0083 Score=68.86 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl 555 (619)
++.++-.+...+++-+.-.+++. |++.+. .++.|+++||.++.|.+.+++.+.||.++.. ....++.|+|||+
T Consensus 294 tR~~fe~l~~~l~~~~~~~i~~~---l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~ 370 (627)
T PRK00290 294 TRAKFEELTEDLVERTIEPCKQA---LKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAI 370 (627)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHH
Confidence 56676655555555544433333 344443 5789999999999999999999999987754 3466789999999
Q ss_pred HHHhhccc
Q 007076 556 LGAVAAKR 563 (619)
Q Consensus 556 lA~~~~G~ 563 (619)
.|+.-.+.
T Consensus 371 ~aa~l~~~ 378 (627)
T PRK00290 371 QGGVLAGD 378 (627)
T ss_pred HHHHhcCC
Confidence 99875553
No 59
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.25 E-value=0.012 Score=66.96 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl 555 (619)
++.++..+..-+++-+.-.++.. |++.+ ..++.|+++||.++.|.+.+++.+.|+.++.. ....++.|+|||+
T Consensus 280 tr~efe~l~~~ll~~i~~~i~~~---L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai 356 (599)
T TIGR01991 280 TRDEFEALIQPLVQKTLSICRRA---LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAI 356 (599)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHH
Confidence 56777655556665555444443 34444 35789999999999999999999999986543 3466789999999
Q ss_pred HHHhhcc
Q 007076 556 LGAVAAK 562 (619)
Q Consensus 556 lA~~~~G 562 (619)
.|+.-.+
T Consensus 357 ~a~~l~~ 363 (599)
T TIGR01991 357 QADLLAG 363 (599)
T ss_pred HHHHhcc
Confidence 9986443
No 60
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.23 E-value=0.015 Score=66.59 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAl 555 (619)
++.++..+..-+++-+.-.++. .|++.+. .++.|+++||.++.|.+.+++++.||.++. .....++.|+|||+
T Consensus 296 tr~efe~l~~~l~~~~~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi 372 (616)
T PRK05183 296 TREQFNALIAPLVKRTLLACRR---ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAI 372 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHH
Confidence 5666655445555555433333 3444443 578999999999999999999999997654 34466789999999
Q ss_pred HHHhhcc
Q 007076 556 LGAVAAK 562 (619)
Q Consensus 556 lA~~~~G 562 (619)
.|+.-.+
T Consensus 373 ~a~~l~~ 379 (616)
T PRK05183 373 QADILAG 379 (616)
T ss_pred HHHHhcc
Confidence 9986444
No 61
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.22 E-value=0.19 Score=51.26 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCCCcEeEEc-C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CcCCHHHHHHHHhhhC
Q 007076 465 DPKSKGIICG-M-----TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG 537 (619)
Q Consensus 465 d~~a~g~~~G-l-----~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advlg 537 (619)
+.+.-++-+| + ...-.++|+++ +++..|+..+-++--.. ......++|+..|| ...++..++.++..++
T Consensus 181 ~~d~iASsfGkv~~~~~~~~~~~eDiAa---SLl~mV~~nIg~lA~~~-a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~ 256 (279)
T TIGR00555 181 DGSLTASSFGKVLSKHLDQSFSPEDIAA---SLLGLIGNNIGQIAYLC-ALRYNIDRIVFIGSFLRNNQLLMKVLSYATN 256 (279)
T ss_pred CcceeeeccchhhccccccCCCHHHHHH---HHHHHHHHHHHHHHHHH-HHHcCCCeEEEECCcccCCHHHHHHHHHHHh
Confidence 4566677777 3 23345888875 99999988776654322 22235679999999 6689999999999876
Q ss_pred ---CceeecCCCC-ccchHHHH
Q 007076 538 ---CPIILPRENE-SVLLGAAI 555 (619)
Q Consensus 538 ---~pV~~~~~~e-~~alGAAl 555 (619)
..+..++..+ .+|+|||+
T Consensus 257 ~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 257 FWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred hcCceEEEECCcchHHHhhhcc
Confidence 4455666444 77999986
No 62
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.19 E-value=0.012 Score=67.18 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl 555 (619)
++.++..+..-+++-+.-.+++ .|++.+. .++.|.++||.++.|.+.+++.+.||.++.. ....|+.|+|||+
T Consensus 292 tr~~fe~l~~~l~~~~~~~i~~---~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~ 368 (595)
T TIGR02350 292 TRAKFEELTADLVERTKEPVRQ---ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAI 368 (595)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHH
Confidence 5666654444555544433333 3344443 5789999999999999999999999987654 3456788999999
Q ss_pred HHHhhccc
Q 007076 556 LGAVAAKR 563 (619)
Q Consensus 556 lA~~~~G~ 563 (619)
.|+.-.+.
T Consensus 369 ~aa~l~~~ 376 (595)
T TIGR02350 369 QGGVLKGD 376 (595)
T ss_pred HHHHhcCC
Confidence 99875543
No 63
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.16 E-value=0.0091 Score=68.26 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 558 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~ 558 (619)
++.++..+..-+++.+.-.+..+++.......+++.|.++||+++.|.+.+++.+.|+.++... ...++.|+|||+.|+
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence 4667655455555555444444433221112357899999999999999999999999877653 456788999999998
Q ss_pred hhcc
Q 007076 559 VAAK 562 (619)
Q Consensus 559 ~~~G 562 (619)
.-.+
T Consensus 376 ~~~~ 379 (602)
T PF00012_consen 376 ILSG 379 (602)
T ss_dssp HHHT
T ss_pred hhcc
Confidence 6554
No 64
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.12 E-value=0.018 Score=65.48 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILG 557 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g-~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA 557 (619)
++.++..+.+-+++-+.-.++..+ ++.+ ..++.|+++||.++.|.+.+++.+.||.++... ...++.|+|||+.|
T Consensus 278 tr~efe~l~~~l~~~~~~~i~~~L---~~a~~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a 354 (595)
T PRK01433 278 NKQTLEQLILPLVERTINIAQECL---EQAGNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA 354 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---hhcCcccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence 566766555555555544444333 3333 368999999999999999999999999877543 45678899999999
Q ss_pred Hhh
Q 007076 558 AVA 560 (619)
Q Consensus 558 ~~~ 560 (619)
+.-
T Consensus 355 ~~l 357 (595)
T PRK01433 355 ENL 357 (595)
T ss_pred HHh
Confidence 864
No 65
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.90 E-value=0.019 Score=66.13 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl 555 (619)
++.++..+..-+++-+.-.+++ .|++.++ .++.|+++||.++.|.+.+++.+.||.++.. ....|+.|+|||+
T Consensus 335 tR~efe~l~~~l~~~~~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi 411 (663)
T PTZ00400 335 SRAKLEELTHDLLKKTIEPCEK---CIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAI 411 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHH
Confidence 5666654444444444333333 3444443 5789999999999999999999999987643 4466789999999
Q ss_pred HHHhhcc
Q 007076 556 LGAVAAK 562 (619)
Q Consensus 556 lA~~~~G 562 (619)
.|+.-.+
T Consensus 412 ~aa~l~~ 418 (663)
T PTZ00400 412 QAGVLKG 418 (663)
T ss_pred HHHhhcC
Confidence 9987544
No 66
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=95.81 E-value=0.019 Score=60.65 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcC-EEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g-~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl 555 (619)
++.++..+....++.+.-.+++.++.... .. -.++ .|+++||+|+-+.+.+++++.|+.||.+.. ..++.|+|||+
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~ 319 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK 319 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 45666655666677666666666654421 11 1244 699999999999999999999999998876 55688999999
Q ss_pred HHHh
Q 007076 556 LGAV 559 (619)
Q Consensus 556 lA~~ 559 (619)
.+..
T Consensus 320 ~~~~ 323 (336)
T PRK13928 320 MLEN 323 (336)
T ss_pred HHhc
Confidence 9765
No 67
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.69 E-value=0.029 Score=64.85 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVE-HCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA 554 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~-~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAA 554 (619)
++.++..+..-+++- +...++ .|++.++ .++.|+++||.++.|.+.+++.++||.++.. ....|+.|+|||
T Consensus 333 tR~~fe~l~~~l~~r----~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAA 408 (673)
T PLN03184 333 TRAKFEELCSDLLDR----CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAA 408 (673)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHH
Confidence 455554333333333 333332 3444443 5789999999999999999999999986644 456779999999
Q ss_pred HHHHhhcc
Q 007076 555 ILGAVAAK 562 (619)
Q Consensus 555 llA~~~~G 562 (619)
+.|+.-.+
T Consensus 409 i~aa~ls~ 416 (673)
T PLN03184 409 VQAGVLAG 416 (673)
T ss_pred HHHHHhcc
Confidence 99986554
No 68
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.54 E-value=0.032 Score=64.34 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhC-Cce-eecCCCCccchHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGAA 554 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV-~~~~~~e~~alGAA 554 (619)
+|.++-.+..-+++.+.-.+.++ |++.+. .++.|.++||.++.|.+.+++.+.|+ .++ ......|+.|+|||
T Consensus 300 tR~~fe~l~~~l~~~~~~~i~~~---L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa 376 (653)
T PTZ00009 300 SRARFEELCGDYFRNTLQPVEKV---LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAA 376 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhh
Confidence 56666544444444444333333 334443 57899999999999999999999996 455 45567789999999
Q ss_pred HHHHhhcc
Q 007076 555 ILGAVAAK 562 (619)
Q Consensus 555 llA~~~~G 562 (619)
+.|+.-.+
T Consensus 377 ~~aa~ls~ 384 (653)
T PTZ00009 377 VQAAILTG 384 (653)
T ss_pred hhHHHhcC
Confidence 99986544
No 69
>PRK11678 putative chaperone; Provisional
Probab=95.39 E-value=0.073 Score=58.37 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-CceeecCCCCccchHHH
Q 007076 476 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGAA 554 (619)
Q Consensus 476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~~~~e~~alGAA 554 (619)
...-++.++..+++..++-+.-.+++ .+++.+..++.|+++||.++.|.+.+++...|+ .|+...+..++.|.|+|
T Consensus 366 ~~~ItR~efe~ii~~~l~ri~~~i~~---~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla 442 (450)
T PRK11678 366 ATEISQQGLEEAISQPLARILELVQL---ALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA 442 (450)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHH
Confidence 33346777765444444444433333 344566777899999999999999999999996 68888778889999999
Q ss_pred HHHHh
Q 007076 555 ILGAV 559 (619)
Q Consensus 555 llA~~ 559 (619)
+.|..
T Consensus 443 ~~a~~ 447 (450)
T PRK11678 443 RWAQV 447 (450)
T ss_pred HHHHh
Confidence 98864
No 70
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.26 E-value=0.04 Score=63.51 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhC-Cceee-cCCCCccchHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGAA 554 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~-~~~~e~~alGAA 554 (619)
++.++..+..-+++-+.-.+. +.|++.++ .++.|+++||.++.|.+.+++.+.|+ .++.. ....|+.|+|||
T Consensus 295 tR~~fe~l~~~l~~~~~~~i~---~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAA 371 (653)
T PRK13411 295 TRAKFEELTKDLVEATIEPMQ---QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAA 371 (653)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHH
Confidence 566665444444444333222 23445554 37899999999999999999999997 55543 456779999999
Q ss_pred HHHHhhcc
Q 007076 555 ILGAVAAK 562 (619)
Q Consensus 555 llA~~~~G 562 (619)
+.|+.-.+
T Consensus 372 i~aa~l~~ 379 (653)
T PRK13411 372 IQAGVLGG 379 (653)
T ss_pred HHHHhhcC
Confidence 99986544
No 71
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=94.95 E-value=0.055 Score=57.01 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-Cc-CEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH-KI-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~-~~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl 555 (619)
+++++..++...++.+.-.+++.++.... ... .. ..|+++||+++-+.+.+.+.+.++.||.+.. ..++.|+|||+
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 45566555666667666666665554321 001 12 3599999999999999999999999998876 44578999999
Q ss_pred HHHh
Q 007076 556 LGAV 559 (619)
Q Consensus 556 lA~~ 559 (619)
.+..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9765
No 72
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.89 E-value=0.12 Score=50.34 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=50.3
Q ss_pred CeEEEEEcCCcceEEEEEcCCCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFAA 131 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis~ 131 (619)
..+|+||+|+|++|++++...|. .+...+..+++-. .......+++++.+.++|.+.++.... +..+..-+|++-
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~--~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfTF 139 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPE--ELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFTF 139 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--H--HHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEEE
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCCh--HHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEEE
Confidence 35899999999999999995544 3333333333210 011234489999999999999987543 345667788864
No 73
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.85 E-value=0.17 Score=55.15 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l----~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 544 (619)
+.++..+.++-+|-+.-.+++.++.+ .+.+ ..+..|+++||+|+-+.+.++++++|+.||.+..
T Consensus 290 ~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 290 RQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence 56677777888888877777777544 3333 3467899999999999999999999999998743
No 74
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.46 E-value=0.24 Score=47.57 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=47.8
Q ss_pred EEEEEcCCcceEEEEEc--CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d--~~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
++||||||+++|+++.. .+| ++++....|..-. ..| .-.|.+.+-+++.++++++-+.++....+ ..+++++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi-~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g~ 77 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGI-RKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISGR 77 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcCC
Confidence 46999999999999986 345 4455444432111 223 45688888888888888886666654333 34677664
No 75
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=94.35 E-value=0.079 Score=55.84 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCcCE-EEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHH
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAH-G-HKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAIL 556 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g-~~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAll 556 (619)
+.++..++...++.+.-.+++.++..... . ..+++ |+++||+++-+.+.+.+++.++.||.+... .++.++|||++
T Consensus 246 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 246 SEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 45555555556666665555555533210 0 11244 999999999999999999999999988764 45778999998
Q ss_pred HHh
Q 007076 557 GAV 559 (619)
Q Consensus 557 A~~ 559 (619)
+..
T Consensus 326 ~~~ 328 (335)
T PRK13930 326 LEN 328 (335)
T ss_pred HhC
Confidence 754
No 76
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=94.16 E-value=0.11 Score=55.03 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=46.9
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHH---HHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAIC---AAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~~~g~~e~dp~~~~~~~~---~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+|.|.+|+||+|++||+.+++++.+..... +.. -+++.+.+.+. +.+.+++++.++...+|.+|+- -
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~-------~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~~--R 72 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEEL-------GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAVVG--R 72 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHh-------cccccHHHHHHHHHHHHHHHHHHcCCCcccccEEEE--C
Confidence 799999999999999999998877654443 211 12223344444 5666666666655667888832 1
Q ss_pred ccccc
Q 007076 133 CSLVD 137 (619)
Q Consensus 133 ~~~vd 137 (619)
+|+++
T Consensus 73 gG~~~ 77 (351)
T TIGR02707 73 GGLLK 77 (351)
T ss_pred CCCCc
Confidence 45664
No 77
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.01 E-value=0.12 Score=54.45 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-CEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHH
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 556 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~-~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAll 556 (619)
+.++..++...++.+.-.++..++.... .... . +.|+++||+|+-+.+.+.+++.|+.||.+.. ..++.|+|||++
T Consensus 245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~ 324 (333)
T TIGR00904 245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA 324 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence 3455444555566665555555544321 1111 2 3699999999999999999999999998876 445789999998
Q ss_pred HHh
Q 007076 557 GAV 559 (619)
Q Consensus 557 A~~ 559 (619)
+..
T Consensus 325 ~~~ 327 (333)
T TIGR00904 325 LED 327 (333)
T ss_pred HhC
Confidence 643
No 78
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.92 E-value=0.31 Score=49.07 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEEc
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGFA 130 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~-I~aIgis 130 (619)
++++.|||=|.|..|.+++|++++++.++......+ .-.+-+..-+.+.+.++++..+.+.+... ++++|++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh-----~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNH-----WLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLG 74 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeecccccc-----ccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeee
Confidence 468999999999999999999999998876544322 12335677788899999999998887776 7888775
No 79
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.17 Score=56.45 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 558 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~ 558 (619)
.+.++-.+..-+++=+-.-+...++...-.+-++..|=++||.+|.|.+-+++++.||++..+. ...|+.|+||||.++
T Consensus 301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA 380 (727)
T KOG0103|consen 301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA 380 (727)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence 3566655555666666555554444322122356688899999999999999999999999754 467899999999988
Q ss_pred hh
Q 007076 559 VA 560 (619)
Q Consensus 559 ~~ 560 (619)
.-
T Consensus 381 Il 382 (727)
T KOG0103|consen 381 IL 382 (727)
T ss_pred hc
Confidence 64
No 80
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.56 E-value=0.37 Score=49.12 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
.++++||||||+++|+++.+.+++++.....+-.-. ..|. -.|.+.....+..+++.+-+..+. +|..+.+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g~---~i~~v~~ 93 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLGR---ELTHAAT 93 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhCC---CcCeEEE
Confidence 468999999999999999987777655544433211 3333 556666666666665544333333 3444444
No 81
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.39 E-value=0.29 Score=51.91 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 544 (619)
+++|+.+ -+.|-.|.++.+.++.+. ..+++|+++|||++|+.+++.+...+..+|...+
T Consensus 260 s~~D~~a---Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~ 318 (365)
T PRK09585 260 SPEDVQA---TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTD 318 (365)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence 4667653 667766766666654432 2346899999999999999999999975665544
No 82
>PLN02920 pantothenate kinase 1
Probab=93.35 E-value=3.4 Score=43.93 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=94.2
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076 349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 428 (619)
Q Consensus 349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~ 428 (619)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +...|+++.
T Consensus 167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll 217 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL 217 (398)
T ss_pred eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence 47788998765443322 1233344455555555432333222 345677776
Q ss_pred HHHHhhhhccCCCCccCCCCceEEcccCCCCC---CCCCCCCCcEeEEc--CCC-----CCCHHHHHHHHHHHHHHHHHH
Q 007076 429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAYG 498 (619)
Q Consensus 429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r---~P~~d~~a~g~~~G--l~~-----~~~~~~l~~~~rAvlEgiaf~ 498 (619)
++++.=.. ..-++ .+-.+.|.. .+--+.++-++-+| ... +-+++|+++ +++--|+.+
T Consensus 218 ~lA~~Gd~---------~nvDl-lVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~---SLL~mVs~n 284 (398)
T PLN02920 218 ELSHQGNN---------RVIDM-LVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVAR---SLLRMISNN 284 (398)
T ss_pred HHHhCCCc---------cccCc-eeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence 66543110 01122 345555522 22345667777777 322 234788765 999999988
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCcCCH-HHHHHHHhhh------CCceeecC-CCCccchHHHHHHH
Q 007076 499 TRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADII------GCPIILPR-ENESVLLGAAILGA 558 (619)
Q Consensus 499 ~~~~l~~l~~~g~~~~~I~~~GG~a~s~-~~~Qi~Advl------g~pV~~~~-~~e~~alGAAllA~ 558 (619)
+-++--...+ ...+++|+.+|+..+++ ..++.++-.. ++....++ ..-.+|+||++...
T Consensus 285 IgqiA~L~A~-~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 285 IGQISYLNAL-RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred HHHHHHHHHH-HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 8876432222 24678999999999887 6666555543 23333444 44588999976543
No 83
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.12 E-value=0.15 Score=53.83 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=38.0
Q ss_pred cC-EEEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHH
Q 007076 513 ID-TLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAIL 556 (619)
Q Consensus 513 ~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAll 556 (619)
++ .|+++||+|+-+.+.+.+++.++.||.+... .++.++||+..
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 44 5999999999999999999999999988744 45778899876
No 84
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.99 E-value=0.42 Score=51.16 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=48.2
Q ss_pred EEEEEcCCcceEEEEEc--CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d--~~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
++||||||+++|+++.. .++ ++++....|..-. ..| .-.|++.+-+++.++++++-+.++....+ ..+++++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi-~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g~ 78 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI-KKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISGA 78 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEccc
Confidence 68999999999999976 334 3445444443211 223 45688888888888888876666654333 45677664
No 85
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=92.84 E-value=0.44 Score=50.57 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCC-----CccchHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPREN-----ESVLLGA 553 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~-----e~~alGA 553 (619)
.++|+.+ -+.|-.|.++.+.++.+. .++++|+++|||++|+.+++.+...+.. +|...+.- ---|+.=
T Consensus 258 ~~~D~~a---Tlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF 331 (364)
T PF03702_consen 258 SPEDILA---TLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF 331 (364)
T ss_dssp -HHHHHH---HHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred ChHHHHH---HHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence 3677653 777777777766666553 3478999999999999999999998865 88665421 1225666
Q ss_pred HHHHHhhc
Q 007076 554 AILGAVAA 561 (619)
Q Consensus 554 AllA~~~~ 561 (619)
|+||...+
T Consensus 332 A~La~~~~ 339 (364)
T PF03702_consen 332 AWLAYRRL 339 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 86
>PRK13317 pantothenate kinase; Provisional
Probab=92.66 E-value=0.3 Score=49.94 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.7
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEE
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSA 82 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~ 82 (619)
++.+|||+|+|.+|.+++|+++++....
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~~ 29 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFKT 29 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence 4789999999999999999888766443
No 87
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=92.41 E-value=0.49 Score=51.57 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=51.4
Q ss_pred CCCCeEEEEEcCCcceEEEEEc--CCCC--EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGV 127 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d--~~g~--il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aI 127 (619)
|+.++++||||||+++|+++.. .+|+ ++.....|..-. ..| .-.|.+..-+++.++++++-+.++....++ .+
T Consensus 5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi-~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v-~v 81 (420)
T PRK09472 5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGM-DKG-GVNDLESVVKCVQRAIDQAELMADCQISSV-YL 81 (420)
T ss_pred cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCc-cCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEE-EE
Confidence 4456899999999999998776 3554 445555442111 233 457888888888888888766665544443 36
Q ss_pred EEcCc
Q 007076 128 GFAAT 132 (619)
Q Consensus 128 gis~~ 132 (619)
+|++.
T Consensus 82 ~i~g~ 86 (420)
T PRK09472 82 ALSGK 86 (420)
T ss_pred EecCc
Confidence 66663
No 88
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.4 Score=50.14 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=45.2
Q ss_pred CCcCEEEEecCCcCCHHHHHHHHhhhC-C-ceeecCCCCccchHHHHHHHhhccc
Q 007076 511 HKIDTLLACGGLAKNPLFLQQHADIIG-C-PIILPRENESVLLGAAILGAVAAKR 563 (619)
Q Consensus 511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg-~-pV~~~~~~e~~alGAAllA~~~~G~ 563 (619)
..++.|+++||.+|-|-..|++-|.|+ + |-.-....|+.|.|||..|++-.|.
T Consensus 361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 368899999999999999999999994 4 5555667889999999999886665
No 89
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=91.69 E-value=0.29 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEE
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGS 81 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~ 81 (619)
|.+|||+|++|++++|++++++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999988776654
No 90
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=91.52 E-value=0.73 Score=49.07 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCE-EEEecCCcCCHHHHHHHHhhhCC-ceeecC--CCCccchHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAAI 555 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~-I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~--~~e~~alGAAl 555 (619)
...|++.-++..+|-+.+.+...+ +++.+ .++ |.++||.+-|-.+++.+.+..+. .|.|++ .+++.++|||+
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~~~~~~--~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~ 209 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLHLVRHL--LERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL 209 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHH--HHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence 457888878889998887654332 22333 445 99999999999999999999665 477766 44577999999
Q ss_pred HHHhhccc
Q 007076 556 LGAVAAKR 563 (619)
Q Consensus 556 lA~~~~G~ 563 (619)
.+....+.
T Consensus 210 ~~~~~~~~ 217 (360)
T PF02543_consen 210 YAWHELGG 217 (360)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhcC
Confidence 99877654
No 91
>PLN02914 hexokinase
Probab=91.46 E-value=0.63 Score=51.26 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=43.2
Q ss_pred CeEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076 55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
-.+++||+|+||.|+++++..|+ ++...+..+++-. ....-..+++|+.+.++|.+++++.
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~l~~gt~~eLFdfIA~~i~~fl~~~ 158 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQ--ELMFGTSEELFDFIASGLANFVAKE 158 (490)
T ss_pred eEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 35899999999999999996552 4444444333211 1123456899999999999999864
No 92
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.41 E-value=0.42 Score=50.57 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076 487 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544 (619)
Q Consensus 487 ~~rAvlEgiaf~~~~~l~~l~~--~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 544 (619)
.++.+++-++-++++.++.+.. .+.++++|+++||+++-+-+.+.+++.||.||++..
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 3568899999999999997654 356899999999999999999999999999999865
No 93
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=91.27 E-value=0.81 Score=46.61 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHH-----HhhhCCceeecCC-CCccchHHHHHH
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG 557 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~-----Advlg~pV~~~~~-~e~~alGAAllA 557 (619)
..+++..+..+.+.+..+.+ .+.....|++.||..+|..+.+-+ ..+...|+.++.. ...+++|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 36777777777777665544 333323399999999997776655 4445566666554 457899999987
No 94
>PF13941 MutL: MutL protein
Probab=91.22 E-value=0.73 Score=50.25 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=41.9
Q ss_pred EEEEEcCCcceEEEEEc---CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076 57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d---~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~ 118 (619)
+|.+|||+|-+|+.+|| .+.++++..+.|+. ++. .++...+.++++++.+..+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~~--~Dv~~G~~~A~~~l~~~~~ 57 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VEP--GDVTIGLNNALEQLEEQTP 57 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cCc--ccHHHHHHHHHHHHHHhcC
Confidence 68899999999999999 56788888888876 222 5677777888887776654
No 95
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.59 Score=51.23 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHH-HHHHhhhCCceeecC--CCCccchHHHHH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAIL 556 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~-Qi~Advlg~pV~~~~--~~e~~alGAAll 556 (619)
...|++...++.+|-+...+...+.. +.| ..+|.++||.+.|-.++ +++...++..|.|.+ ..++.|+|||+.
T Consensus 257 ~~~diAasaQ~~lE~l~l~~~~~~~~--~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~ 332 (555)
T COG2192 257 RAADIAASAQAYLEELVLEMLRYLRE--ETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALA 332 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HhC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHH
Confidence 35688878889999999866554432 222 67899999999999999 899999998998866 445779999999
Q ss_pred HHhhccc
Q 007076 557 GAVAAKR 563 (619)
Q Consensus 557 A~~~~G~ 563 (619)
+....+.
T Consensus 333 ~~~~~~~ 339 (555)
T COG2192 333 VKRELGG 339 (555)
T ss_pred HHHHhcC
Confidence 9876543
No 96
>PLN02405 hexokinase
Probab=91.08 E-value=0.72 Score=50.96 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=42.7
Q ss_pred eEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076 56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
.+++||+|+||.|++++...|+ ++...+..+++-+ ....-..+++|+.+.++|.+.+++.
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPP--HLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999996552 4443333333211 1223456889999999999999764
No 97
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=90.71 E-value=2.5 Score=44.52 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=88.2
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076 349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 428 (619)
Q Consensus 349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~ 428 (619)
-+++++||...+..+.. ++.|-..|++.-||..+-=+...+. +...|+++.
T Consensus 158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~ 208 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL 208 (341)
T ss_dssp EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence 47789998755443322 2334444555556665533333221 234566666
Q ss_pred HHHHhhhhccCCCCccCCCCceEEcccCCCCC--CCCCCCCCcEeEEcCCCC-------CCHHHHHHHHHHHHHHHHHHH
Q 007076 429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT 499 (619)
Q Consensus 429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r--~P~~d~~a~g~~~Gl~~~-------~~~~~l~~~~rAvlEgiaf~~ 499 (619)
++++.=.. ..-+ +.+-.+.|.. .+.-..+.-++-+|--.. ..++|+++ +++.-|++++
T Consensus 209 ~la~~G~~---------~~vD-llV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~---sll~mv~~nI 275 (341)
T PF03630_consen 209 ELAKKGDN---------SNVD-LLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAK---SLLNMVSNNI 275 (341)
T ss_dssp HHHHH--G---------GGTS-EEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHH---HHHHHHHHHH
T ss_pred HHhcCCCc---------cccC-ceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHH---HHHHHHHHHH
Confidence 66543111 0112 2344555544 222345666665553332 24677665 9999999998
Q ss_pred HHHHHHHHhCCCCcCEEEEecCCcC-CHHHHHHHH---hhh---CCceeecC-CCCccchHHHHH
Q 007076 500 RHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DII---GCPIILPR-ENESVLLGAAIL 556 (619)
Q Consensus 500 ~~~l~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~A---dvl---g~pV~~~~-~~e~~alGAAll 556 (619)
-++.-...+ -..+++|+++|...+ ++..++.++ +.. +.....++ ..-.+|+||.+.
T Consensus 276 g~la~l~A~-~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 276 GQLAYLHAK-IHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HHHHHHHHH-HHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred HHHHHHHHH-HcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 886543322 124689999999885 577888888 443 23333444 445889998764
No 98
>PLN02596 hexokinase-like
Probab=90.70 E-value=0.81 Score=50.44 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=41.8
Q ss_pred eEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076 56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
-+|+||+|+||.|+++++..|+ +....+..+++-. ....-..+++|+.+.++|.+++++.
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~--~l~~~t~~eLFd~IA~~i~~fl~~~ 159 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPS--NVLNGTSQELFDYIALELAKFVAEH 159 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCCh--HhhcCCHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999997654 2333333333211 1123356889999999999999764
No 99
>PTZ00288 glucokinase 1; Provisional
Probab=90.67 E-value=1.5 Score=47.25 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCCcceEEEEEcC---CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 007076 53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116 (619)
Q Consensus 53 ~~~~~lgIDiGTTsiKa~l~d~---~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~ 116 (619)
+-+|++|+|||+|++|.++++. ++..+.....+++. .-.|..+..+.+.+.+.++.+.
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV------TKTDIRELLEFFDEVLQKLKKN 84 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc------ccccHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999985 23333434444331 1356677778878888777654
No 100
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.79 Score=52.00 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHH-HH----HHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHHHHH
Q 007076 488 YLATVQGIAYGTRH-IV----EHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAILGA 558 (619)
Q Consensus 488 ~rAvlEgiaf~~~~-~l----~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAllA~ 558 (619)
.|+.+|.++..+-. .+ ..+.+.+ .+++.|.++||.++-|...+.+++.|+.++. -+...|+.|+|||+.|+
T Consensus 277 tR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~ 356 (579)
T COG0443 277 TRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAA 356 (579)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHH
Confidence 34555555544222 12 2333344 3688999999999999999999999996554 45577899999999999
Q ss_pred hhccccC
Q 007076 559 VAAKRYS 565 (619)
Q Consensus 559 ~~~G~~~ 565 (619)
.-.|...
T Consensus 357 ~l~~~~~ 363 (579)
T COG0443 357 VLSGEVP 363 (579)
T ss_pred hhcCccc
Confidence 8766543
No 101
>PLN02362 hexokinase
Probab=90.13 E-value=0.97 Score=50.14 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=41.5
Q ss_pred eEEEEEcCCcceEEEEEcCCCC---EEEE--EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076 56 VFLGVDVGTGSARAGLFDESGK---LLGS--ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~---il~~--~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~ 118 (619)
.+++||+|+||.|+++++..|+ ++.. .+.++|.. ...-..+++|+.+.++|.+++++.+
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~----l~~~~~~eLFd~IA~~i~~fl~~~~ 159 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQH----LMNSTSEVLFDFIASSLKQFVEKEE 159 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChh----hccCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999996653 2222 22233311 1233578999999999999998743
No 102
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=1.5 Score=45.82 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Ccee
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPII 541 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~ 541 (619)
+++|.. +.+.|-.+-.+ ++.+.......++++++||+++|+++|+.+|..+. .+|.
T Consensus 264 ~a~Dv~---aTL~eltA~tI---v~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 264 NAEDVQ---ATLVELTAATI---VKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CHHHHH---HHHHHHHHHHH---HHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 355654 36777666444 44443333467899999999999999999999995 4443
No 103
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=1.9 Score=44.91 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecc-ccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~-~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|||.-.-..+-++|++.++ +++.....+. .+. .+|.+ |.-...-.+.+..+++++++++++...+|.+|+++..+
T Consensus 3 iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gP 81 (342)
T COG0533 3 ILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGP 81 (342)
T ss_pred EEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCC
Confidence 78888777778888888666 6654433221 122 33433 33345556778888999999988888899999998756
Q ss_pred ccc
Q 007076 134 SLV 136 (619)
Q Consensus 134 ~~v 136 (619)
|++
T Consensus 82 GL~ 84 (342)
T COG0533 82 GLG 84 (342)
T ss_pred Cch
Confidence 653
No 104
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=89.15 E-value=1.3 Score=42.24 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCC-CccchHHHHHHH
Q 007076 489 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAILGA 558 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-e~~alGAAllA~ 558 (619)
+-|+|-+|--.+..++ +-+++.+++.||.+.-+-.-.++-.-|+++|+.+..+ ..+-||.|+..+
T Consensus 208 ~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg~ 273 (277)
T COG4820 208 KPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSGR 273 (277)
T ss_pred hHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhccc
Confidence 4667766655555544 3467899999999988888999999999999988855 477888877543
No 105
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=88.97 E-value=1.2 Score=47.77 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC--CcCE-EEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076 480 SEKQLALLYLATVQGIAYGTR-HIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRE 545 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~-~~l~~l~~~g~--~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~ 545 (619)
++.++..+..+.++-+.-.++ + .+++.+. .+.+ |+++||+|+-+.+.+++.+.|+.||++...
T Consensus 281 s~~~l~~ii~~~~~ei~~~i~~~---~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 281 SRKELAEIIEARAEEILEIVKQK---ELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 456666555555555544443 3 4444433 3455 999999999999999999999999987653
No 106
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=88.84 E-value=0.31 Score=50.98 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred CEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHHH
Q 007076 514 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG 557 (619)
Q Consensus 514 ~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAllA 557 (619)
+-|+++||+|.-+-+-+.+++-++.||.+.+.++ +.+.|+..+.
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 3599999999999999999999999999988776 5677876643
No 107
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=88.52 E-value=1.7 Score=45.74 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=56.4
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e-~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (619)
+||||-.+..+-++|+|.+|+++.............|-+. .....=.+.+..+++++++++++...+|.+|+++..+|+
T Consensus 3 iLgIETScd~tsvAl~~~~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl 82 (345)
T PTZ00340 3 ALGIEGSANKLGVGIVTSDGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGM 82 (345)
T ss_pred EEEEEccchhhEEEEEECCCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCc
Confidence 8999999999999999977888876544332111214332 223444667788888888888888899999999875553
No 108
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.23 E-value=1.1 Score=46.74 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.2
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeeccc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQI 88 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~ 88 (619)
||+|||+-++|++++|++|++....+.+.|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 5899999999999999999888877777774
No 109
>PRK14878 UGMP family protein; Provisional
Probab=88.19 E-value=1.7 Score=45.62 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHH
Q 007076 482 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 482 ~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~ 558 (619)
.+++. ++.+.++-.+.++.....+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++..-++- |++|+|.
T Consensus 215 ~diAa---~fq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D-~GimIA~ 289 (323)
T PRK14878 215 EDVCY---SLRETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGD-NGAMIAY 289 (323)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCch-HHHHHHH
Confidence 46654 77777776666666555431 24678999999999999999999987 88888866322333 4444454
Q ss_pred h
Q 007076 559 V 559 (619)
Q Consensus 559 ~ 559 (619)
.
T Consensus 290 ~ 290 (323)
T PRK14878 290 T 290 (323)
T ss_pred H
Confidence 3
No 110
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=88.16 E-value=1.4 Score=44.21 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=32.9
Q ss_pred EEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHH
Q 007076 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSA 113 (619)
Q Consensus 59 gIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~ 113 (619)
||||||+++|+++.+.+++.++.. +.+..+-.+..-.|.+.....+..+++.+
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~--~~~~~~~~~g~I~d~~~~~~~l~~l~~~a 53 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGV--MQFADVVRDGIVVDFLGAVEIVRRLKDTL 53 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEE--ecccccccCCeEEEhHHHHHHHHHHHHHH
Confidence 799999999999999777654443 33322211224567766666555555443
No 111
>PTZ00107 hexokinase; Provisional
Probab=88.08 E-value=2.7 Score=46.23 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=41.4
Q ss_pred eEEEEEcCCcceEEEEEcCCCC-EEEEEEee--cccccCCC---c--cccCHHHHHHHHHHHHHHHHHHc
Q 007076 56 VFLGVDVGTGSARAGLFDESGK-LLGSASSP--IQIWKEGD---C--IEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~-il~~~~~~--~~~~~~~g---~--~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
.+++||+|+|+.|++++...|+ .....+.. +|...-.| . -+...+++|+.+.++|.+.+++.
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~ 144 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEEN 144 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999996654 32222222 22111001 1 12257899999999999999864
No 112
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.85 E-value=1.2 Score=45.45 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC--CcCCH-HHHHHHHhhhCCceeecCCCCccchHHHHHHHh
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAV 559 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG--~a~s~-~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~ 559 (619)
++++.|++++.+..++-. + .+..+|+++|. .++++ .+...+.+.|+.+|.+... +.+|.|+|++|--
T Consensus 242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d 311 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED 311 (326)
T ss_pred HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence 569999999887766533 2 23347999998 77888 9999999999999988775 7889999999863
No 113
>PRK13324 pantothenate kinase; Reviewed
Probab=87.67 E-value=1.8 Score=43.81 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|.||+|-|++|.+++|. ++++...+.++ . .....+++.. .++.+++..+.+..+|..|.+|+
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~~-------~~~t~de~~~----~l~~~~~~~~~~~~~i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATSS-------VDSTSDQMGV----FLRQALRENSVDLGKIDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecCc-------cccchHHHHH----HHHHHHHhcCCCccCCCeEEEEe
Confidence 789999999999999993 45555444443 2 1223344443 34555555455556788888876
No 114
>PRK13331 pantothenate kinase; Reviewed
Probab=87.49 E-value=1.9 Score=43.37 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=36.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|.||||-|++|.++||. .+++..-+ +.. ....+ ++.++...+.+..+|.++.+|+
T Consensus 9 ~L~iDiGNT~~~~g~f~~-~~~~~~~r--t~~-------~~t~d---------~~~~l~~~~~~~~~i~~~iisS 64 (251)
T PRK13331 9 WLALMIGNSRLHWGYFSG-ETLVKTWD--TPH-------LDESI---------IQLLLPGQTLLIVAPNPLVIAS 64 (251)
T ss_pred EEEEEeCCCcEEEEEEEC-CEEEEEEE--cCC-------cchHH---------HHHHHHHcCCCccccCEEEEEe
Confidence 899999999999999994 35554322 221 11111 4555565555666788888876
No 115
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=87.11 E-value=2.8 Score=44.29 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-C-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076 488 YLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~-~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 544 (619)
.+.+++-++-+++..++.+.. . +.++++|+++||+++-+-+...++..||.||++..
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~ 314 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence 458889999888888887744 2 35789999999999999999999999999998765
No 116
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=86.95 E-value=1.5 Score=46.27 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred CeEEEEEcCCcceEEEEEcCC-C--CEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~-g--~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (619)
..++|||||++++|++.+... + +++.....+.|... ..| .-.|++.+- ++|++++++.+.... -..+++.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g-~i~d~~~~~----~~l~~~~~~~~~~~k-~v~~alp 76 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEG-HIVEYQAVA----EALKELLSELGINTK-KAATAVP 76 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCC-CccCHHHHH----HHHHHHHHHcCCCcc-eEEEEec
Confidence 358999999999999999843 3 34444455555322 223 234665554 455555555554322 3466665
Q ss_pred Cc
Q 007076 131 AT 132 (619)
Q Consensus 131 ~~ 132 (619)
+.
T Consensus 77 ~~ 78 (348)
T TIGR01175 77 GS 78 (348)
T ss_pred CC
Confidence 53
No 117
>PRK09604 UGMP family protein; Validated
Probab=86.78 E-value=1.6 Score=45.96 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=53.0
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+||||-.+..+-++|+|.+++++....... .... ..|.. +.....--+.+...+++++++.++++.+|.+|+++.-+
T Consensus 3 iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GP 82 (332)
T PRK09604 3 ILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGP 82 (332)
T ss_pred EEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 899999888899999987768887654322 1111 12221 22223345567777888888888888999999998644
Q ss_pred c
Q 007076 134 S 134 (619)
Q Consensus 134 ~ 134 (619)
|
T Consensus 83 G 83 (332)
T PRK09604 83 G 83 (332)
T ss_pred C
Confidence 3
No 118
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=86.76 E-value=3.4 Score=44.72 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 545 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~ 545 (619)
++..+.++.+|-+|=+..-++.-++...........|+++||+++-+-...+-.++|++||++...
T Consensus 288 t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 288 TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 456666666777776666665444433221335678999999999999999999999999987554
No 119
>PRK13326 pantothenate kinase; Reviewed
Probab=86.06 E-value=2.4 Score=43.03 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 557 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA 557 (619)
.++.|.+..+..+++.+++. +. .-.|+++||.+ ++++..+..+..+ .++-+..|-+++.
T Consensus 194 Gi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i~ 253 (262)
T PRK13326 194 GVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRILG 253 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHHH
Confidence 67777777777777777653 32 34699999965 4566666766655 3556666665543
No 120
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=85.70 E-value=1.4 Score=51.07 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC---CceeecC----CCCccchH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLG 552 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg---~pV~~~~----~~e~~alG 552 (619)
.+.+++. ++.++++-.+.++++.+.+. ..+++|+++||.++|..+++.+.+.++ ..|..+. .+.+.++|
T Consensus 630 ~~~~IAa---~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislG 705 (711)
T TIGR00143 630 DRSKIAH---IAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLG 705 (711)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHH
Confidence 4555543 77777777666666655431 246789999999999999999998875 6675543 34566788
Q ss_pred HHHHHH
Q 007076 553 AAILGA 558 (619)
Q Consensus 553 AAllA~ 558 (619)
.|++|+
T Consensus 706 Qa~~a~ 711 (711)
T TIGR00143 706 QAVAAA 711 (711)
T ss_pred HHHHhC
Confidence 877663
No 121
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=85.70 E-value=2.6 Score=42.48 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhC--CceeecC
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR 544 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~ 544 (619)
+-++++++|++..-+-.+.. ...+++-|+++||.+++..++..+.+-+. .||.+.+
T Consensus 272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P 330 (358)
T COG3426 272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP 330 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecC
Confidence 46788899988876665544 45689999999999999999999999876 5887755
No 122
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.66 E-value=3.4 Score=42.26 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.2
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGS 81 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~ 81 (619)
.+|||+|+|-+|.+.+|++++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEE
Confidence 5899999999999999998887754
No 123
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=85.54 E-value=2.3 Score=44.83 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHHhh
Q 007076 488 YLATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVA 560 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~-l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~~~ 560 (619)
.+++.|.++-.+.+.++. +++. .+++|+++||.+.|..+++.+.++. +.+++.++..- +.=-|||+|..|
T Consensus 240 aasfq~~v~~~L~~k~~~a~~~~--~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~-ctDNaaMIa~~g 313 (345)
T PTZ00340 240 CFSLQETIFAMLVEVTERAMSHC--GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERY-CIDNGAMIAYAG 313 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHh-hhhhHHHHHHHH
Confidence 347777777666655443 3333 4678999999999999999999986 77888776332 222455666554
No 124
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=84.65 E-value=1.4 Score=44.34 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEee
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~ 85 (619)
|+.++++.||=|||+.|+-+++.+|+++.+.+-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 5557799999999999999999999988865443
No 125
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=83.60 E-value=3.8 Score=43.30 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=36.3
Q ss_pred EEEcCCcceEEEEEcCCCC---EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 59 GVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 59 gIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
|||||+.++|++-++..++ +......++|.-. ..| .-.|++.+-++ |++++++.+.. .+-..+++.++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~----L~~~~~~~~~~-~k~v~~aip~~ 72 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEA----LKELLKENKIK-GKKVVLAIPGS 72 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHH----HHHHHHHHT-----EEEEEE-GG
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHH----HHHHHHHcCCC-CCeEEEEeCCC
Confidence 8999999999999996543 3445566666322 111 23567666555 55555544442 34456777663
No 126
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.48 E-value=3.1 Score=42.88 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076 487 LYLATVQGIAYGTRHIVEHCNAH-G-HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 545 (619)
Q Consensus 487 ~~rAvlEgiaf~~~~~l~~l~~~-g-~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~ 545 (619)
..+-+++.+.-.+++.++.+-.. + ..+++|+++||+++-.-+-+++.+-++.|+.+...
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 34688999999999999977543 3 58899999999999999999999999999988663
No 127
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.45 E-value=2.9 Score=47.06 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=45.0
Q ss_pred CCCcCEEEEecCCcCCHHHHHHHHhhhCCcee--ecCCCCccchHHHHHHHhhccccC
Q 007076 510 GHKIDTLLACGGLAKNPLFLQQHADIIGCPII--LPRENESVLLGAAILGAVAAKRYS 565 (619)
Q Consensus 510 g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~--~~~~~e~~alGAAllA~~~~G~~~ 565 (619)
...+..|+++||.++-|.+.+++.|.|+-.-. -....|+.|+|||+.|+.-.|...
T Consensus 332 k~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~ 389 (620)
T KOG0101|consen 332 KSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS 389 (620)
T ss_pred ccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence 34688999999999999999999999985222 223668999999999998766543
No 128
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=83.24 E-value=4 Score=46.03 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=54.9
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
++||||-.+..+-++|++.+|+++......+. .+.+|.. +.....=.+.+...++++++++++...+|.+|+++..+|
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg 80 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPG 80 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCC
Confidence 39999999999999999966788877654421 1122322 222233456677888888888888889999999986543
No 129
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=83.14 E-value=2.6 Score=43.99 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh----CCceeecCC----CCccchHHHHHHH-
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII----GCPIILPRE----NESVLLGAAILGA- 558 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl----g~pV~~~~~----~e~~alGAAllA~- 558 (619)
+.|.+|+++-.+...+-. -.+++.|+++|..++++.+...+.+.| +.+|..... ...+|.|+|++|-
T Consensus 240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 568899988666544332 235678999999999988776655555 546654332 2348999999984
Q ss_pred hhccccCCH
Q 007076 559 VAAKRYSSL 567 (619)
Q Consensus 559 ~~~G~~~~~ 567 (619)
.+-|.|..+
T Consensus 316 laGG~~~~l 324 (343)
T PF07318_consen 316 LAGGRYKEL 324 (343)
T ss_pred hhcccHHHH
Confidence 444665544
No 130
>PRK09604 UGMP family protein; Validated
Probab=83.00 E-value=5 Score=42.26 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCC
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 545 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~ 545 (619)
+.++++ ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++.
T Consensus 227 ~~~iA~---s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 290 (332)
T PRK09604 227 KADIAA---SFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPL 290 (332)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 356654 66666666666665554331 24678999999999999999999998 788877653
No 131
>PTZ00297 pantothenate kinase; Provisional
Probab=82.56 E-value=33 Score=43.33 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CcCCHHHHHHHHhhh------CCceeecC-CCCccchH
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADII------GCPIILPR-ENESVLLG 552 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advl------g~pV~~~~-~~e~~alG 552 (619)
++|+++ +++-.|.+++-++-- |......+++|+.+|+ ...|+..++.++..+ ++....++ ....+|+|
T Consensus 1364 ~~Di~~---sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~G 1439 (1452)
T PTZ00297 1364 AIDIVR---SLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALG 1439 (1452)
T ss_pred HHHHHH---HHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhh
Confidence 677665 999999999887643 3222346789999999 557899999999886 34444444 44588999
Q ss_pred HHHHH
Q 007076 553 AAILG 557 (619)
Q Consensus 553 AAllA 557 (619)
|++..
T Consensus 1440 a~~~~ 1444 (1452)
T PTZ00297 1440 CATLD 1444 (1452)
T ss_pred hhhcC
Confidence 98753
No 132
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=82.28 E-value=4 Score=40.91 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s 525 (619)
.++.|.+..+..+++.+++.-...-+|+++||.++-
T Consensus 184 G~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 184 GAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 677777777777777775531123479999997653
No 133
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=82.27 E-value=3.3 Score=44.90 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCC----ceeecCCCCccchH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC----PIILPRENESVLLG 552 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~----pV~~~~~~e~~alG 552 (619)
+..|+. ++.-+++--..-++-.+++.|+ ++++++++|-.- ....--.|.++|. +.++.. -..++++
T Consensus 462 TekDi~----e~~kAkgAirAG~~tL~~kaGie~eDie~~ymAGAfG--tyid~~~A~~iGliPd~~~kV~q-~GNtsla 534 (614)
T COG3894 462 TEKDIE----EAGKAKGAIRAGHMTLIEKAGIELEDIERIYMAGAFG--TYIDAKKAMVIGLIPDCDLKVKQ-IGNTSLA 534 (614)
T ss_pred eHHHHH----HHHHHHHHHHHHHHHHHHHcCCChhhhhheeeccccc--cccchhHhheeeccCCcchhhhh-hccchHH
Confidence 345653 5555554333334445566775 466789998632 1222234555553 333322 2345677
Q ss_pred HHHHHHhhccccCCHHHHHHHhhcC
Q 007076 553 AAILGAVAAKRYSSLIEAMKAMNAA 577 (619)
Q Consensus 553 AAllA~~~~G~~~~~~~a~~~~~~~ 577 (619)
-|..|...-+....+++.++++...
T Consensus 535 gAr~aLlse~rr~Eie~ia~~I~~i 559 (614)
T COG3894 535 GAREALLSEGRRDEIEDIASKIEYI 559 (614)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHH
Confidence 7777777777777777776666543
No 134
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=82.05 E-value=4.5 Score=42.22 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=52.3
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|+||-.+..+-++|+|.+++++....... .... .+|-. +.....--+.+...+++++++.+....+|.+|+++..+
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GP 80 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGP 80 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 489999999999999986555776654422 1111 22222 22234445667777888888888888899999998755
Q ss_pred c
Q 007076 134 S 134 (619)
Q Consensus 134 ~ 134 (619)
|
T Consensus 81 G 81 (314)
T TIGR03723 81 G 81 (314)
T ss_pred C
Confidence 4
No 135
>PRK03011 butyrate kinase; Provisional
Probab=81.66 E-value=4.3 Score=43.19 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhC--CceeecCCC---CccchHHH
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPREN---ESVLLGAA 554 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~~~---e~~alGAA 554 (619)
+.+++-.++.+...+-.+.. .+.+++.|+++||.+.++.+.+.+.+.+. .||.+.... ++.++||+
T Consensus 271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence 46788888888877665544 33368899999999988888877666654 377655422 24455544
No 136
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.64 E-value=5.1 Score=39.66 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=39.6
Q ss_pred eEEEEEcCCcceEEEEEcCCCCEEEEE-EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~il~~~-~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
.++|||-|||.+|++++|.++.+..+- +.+.. + . +=...++++-.++++..++|..|+++-
T Consensus 4 ~fVGiDHGTsgi~~ai~d~e~~~~Fklgrae~~--------~-----~--~ek~~L~~l~de~~i~l~eidlialtY 65 (332)
T COG4020 4 MFVGIDHGTSGIKFAIYDGEKDPEFKLGRAELR--------K-----V--AEKSLLRELEDEARIALEEIDLIALTY 65 (332)
T ss_pred EEEeecCCCcceEEEEEcCCCCceEEechhhhh--------h-----h--hHHHHHHHhhHhhCCccccceEEEEee
Confidence 489999999999999999777654432 11111 0 0 012345555555566678899898864
No 137
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.04 E-value=4.5 Score=46.55 Aligned_cols=74 Identities=27% Similarity=0.300 Sum_probs=45.2
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc-
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC- 133 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~- 133 (619)
.+.+|||+|+|.+-++++|+++.++...+.++. |+.....+.+.++.+..... ..+|..|-++++.
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-----------P~~~~~~~~~~~~~~~~~~~--~~~i~~v~~gTT~a 68 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-----------PDLPSGIVNAGIRLALELLE--GSEVDLVVHGTTLA 68 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-----------CCchhhHHHHHHHHHhhccc--cccccEEEEeccHH
Confidence 468999999999999999988767776665542 33333333444433332211 1467777777752
Q ss_pred --ccccCCCC
Q 007076 134 --SLVDADGS 141 (619)
Q Consensus 134 --~~vd~~G~ 141 (619)
.++-++|.
T Consensus 69 TNallerkG~ 78 (674)
T COG0145 69 TNALLERKGL 78 (674)
T ss_pred HHHHHhccCc
Confidence 24444444
No 138
>PLN02666 5-oxoprolinase
Probab=80.97 E-value=5.3 Score=49.34 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHH-----HHcCCCCCCEEEE
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSAC-----SLANVDGEEVKGV 127 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp-~~~~~~~~~~l~~~~-----~~~~~~~~~I~aI 127 (619)
+.|.+|||+|+|-+-++++|.++.-+...+.+.. . ..|+ +.+.+.+..+++.++ ...++++.+|..|
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st-t------p~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV-D------PANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC-C------CCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 3579999999999999999977653444444431 0 1333 335556555555543 2224455678888
Q ss_pred EEcCcc---ccccCCCCee
Q 007076 128 GFAATC---SLVDADGSPV 143 (619)
Q Consensus 128 gis~~~---~~vd~~G~pl 143 (619)
..+++. .++..+|..+
T Consensus 81 ~hGTT~atNAllerkGa~v 99 (1275)
T PLN02666 81 RMGTTVATNALLERKGERI 99 (1275)
T ss_pred EEechHHHHHHHhccCCcE
Confidence 888763 2555566544
No 139
>PLN02902 pantothenate kinase
Probab=80.80 E-value=47 Score=39.17 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=93.7
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076 349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 428 (619)
Q Consensus 349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~ 428 (619)
-+++++||...+..+.. ++.|--.|++.-||..+-=+...+ .+...|+++-
T Consensus 216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LL------------tg~~sFdEll 266 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLL------------TKCKSFDELL 266 (876)
T ss_pred eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHH------------cCCCCHHHHH
Confidence 47889998765443322 123334445555555442222222 2456677776
Q ss_pred HHHHhhhhccCCCCccCCCCceEEcccCCCCC---CCCCCCCCcEeEEc--CC-----CCCCHHHHHHHHHHHHHHHHHH
Q 007076 429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MT-----LDSSEKQLALLYLATVQGIAYG 498 (619)
Q Consensus 429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r---~P~~d~~a~g~~~G--l~-----~~~~~~~l~~~~rAvlEgiaf~ 498 (619)
++++.=.. ..-.+ .+-.+.|.. .+.-..++-++-+| .. .+..++|+++ +++--|+++
T Consensus 267 ~LA~~Gd~---------~~vDl-lVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiar---SLL~mIs~N 333 (876)
T PLN02902 267 ELSQRGDN---------SAIDM-LVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISL---SLLRMISYN 333 (876)
T ss_pred HHHhcCCc---------cccCe-eeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence 66643110 01123 345566531 12234556666666 21 1235788765 999999999
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCc-CCHHHHHHHHhhhC------CceeecC-CCCccchHHHHHH
Q 007076 499 TRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADIIG------CPIILPR-ENESVLLGAAILG 557 (619)
Q Consensus 499 ~~~~l~~l~~~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg------~pV~~~~-~~e~~alGAAllA 557 (619)
+-++--...+ ...+++|+.+|... .++.-|+.++-.+. +....+. ....+|+||.+..
T Consensus 334 IGqiA~L~A~-~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 334 IGQISYLNAL-RFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred HHHHHHHHHH-HcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 8887543322 23578999999977 45777787776542 3344444 3457899998654
No 140
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=1.3 Score=48.36 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=52.5
Q ss_pred HHHHHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCCCccchHHHHHHHhhccccC
Q 007076 501 HIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILGAVAAKRYS 565 (619)
Q Consensus 501 ~~l~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~e~~alGAAllA~~~~G~~~ 565 (619)
.+-..|+..+ -++++|.+.||+++-|...+.+.++||+ |=.-+...|++|+|||+.+++-.|..+
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVk 407 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVK 407 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcccc
Confidence 3455666654 3688999999999999999999999996 666667889999999999887666544
No 141
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=80.72 E-value=4.7 Score=42.23 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=50.7
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
||||-.+..+-++|++.+++++...+.... ...+|.. +.....=-+.+...+++++++++++..+|.+|+++..+
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gP 76 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGP 76 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecc-cCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 588888888889999877788776554332 1122332 22233334556677888888888888999999997643
No 142
>PRK13320 pantothenate kinase; Reviewed
Probab=80.51 E-value=5.5 Score=39.97 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 556 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAll 556 (619)
.++-|.+..+..+++.+++ .+ + -.|+++||.+ +++++.+..++.+ .++-...|-..+
T Consensus 182 G~~~~~~~~i~~~i~~~~~~~~-~-~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~GL~~~ 239 (244)
T PRK13320 182 GVVWGCVAEIEGLIEAYKSKLP-E-LLVILTGGDA------PFLASRLKNTIFA--DEHAVLKGLNRI 239 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCH------HHHHHhcCCccEE--CcchHHHHHHHH
Confidence 5556666666666666655 33 2 4799999985 4566666766654 244555565444
No 143
>PRK00976 hypothetical protein; Provisional
Probab=79.58 E-value=6 Score=41.19 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCH--HHHHHHHhhhCCceeecCCCCccchHHHHHHHhh
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP--LFLQQHADIIGCPIILPRENESVLLGAAILGAVA 560 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~--~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~ 560 (619)
++...+.++..+..++-.+ +++.|++.||.++.+ .+.+.+.+.+..++ ..-..+++++|||++|..-
T Consensus 244 id~~~~~LA~~IAnLi~ll-----DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~-a~LG~dAGaiGAA~iA~~i 312 (326)
T PRK00976 244 IDTLALFVAMEIASLLLLN-----PEDNVVLAGSVGEMDEPDVSERIKELLDKKV-LVLGKESAAIGLALIARDI 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCCEEEEcCccccCchhHHHHHHHHHhcccc-cccCCchHHHHHHHHHHHH
Confidence 4466666666666555443 577899999999876 56666666665443 2224678999999998753
No 144
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=79.41 E-value=3 Score=43.57 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=33.6
Q ss_pred EEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHH
Q 007076 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA 105 (619)
Q Consensus 59 gIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~ 105 (619)
|||=||+++..+.+|+.|+++...+.|... +..+|..+.+.
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~------v~~~p~~iv~~ 41 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE------VAKNPSIIVEE 41 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH------hhhCHHHHHHH
Confidence 799999999999999999999988887763 56777665543
No 145
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=78.64 E-value=6.4 Score=40.91 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=53.8
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccc-c-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIW-K-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
||||-.+..+-++|+|.+++++.......... . .+|-. +.....--+.+...+++++++.++++.+|.+|+++.-+|
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG 80 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPG 80 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 58999999999999986578887665443221 1 22322 333444556677788888888888889999999986454
No 146
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=77.17 E-value=7 Score=44.07 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecC----CCCccchHHHHHHH
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLGAAILGA 558 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~----~~e~~alGAAllA~ 558 (619)
.+++.+.++-.+.+.+....+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++ .+.+.++|+|....
T Consensus 222 A~~~q~~l~~~l~~~~~~~~~~-~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~ 298 (535)
T PRK09605 222 CYSLQETAFAMLTEVTERALAH-TGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLM 298 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHH
Confidence 3477777777777666655331 24578999999999999999999775 77887765 33455677665433
No 147
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=77.15 E-value=4.9 Score=43.00 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HH-HHhCC-CCcCEEEEecCC-cCCHHHHHH----HHhhhC---Cce
Q 007076 475 MTLDSSEKQLALLYLATVQGIAYGTRHIV----EH-CNAHG-HKIDTLLACGGL-AKNPLFLQQ----HADIIG---CPI 540 (619)
Q Consensus 475 l~~~~~~~~l~~~~rAvlEgiaf~~~~~l----~~-l~~~g-~~~~~I~~~GG~-a~s~~~~Qi----~Advlg---~pV 540 (619)
+..-++..+. .+++.++|.|.=....+. .. +.+.| .+.-.|...|.. .+++.+..+ ++++++ -++
T Consensus 361 ~~~~tt~eer-~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~~i 439 (466)
T COG5026 361 FRAPTTKEER-KLIRRLVELIGRRAARLAAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGEKI 439 (466)
T ss_pred hcCCCCHHHH-HHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCCccceeeeecchhhhchhHHHHHHHHHHHhhcccCcee
Confidence 5555555443 356777777765444432 22 23456 455557777874 466655544 344544 456
Q ss_pred eecCCCCccchHHHHHHHhhc
Q 007076 541 ILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 541 ~~~~~~e~~alGAAllA~~~~ 561 (619)
......+++.+|||++|+.+.
T Consensus 440 ~i~~a~dgsglGAAl~a~~~~ 460 (466)
T COG5026 440 KIKPAEDGSGLGAALCALLAQ 460 (466)
T ss_pred eEEecccCcchHHHHHHHHhc
Confidence 555567899999999998754
No 148
>PRK10854 exopolyphosphatase; Provisional
Probab=76.85 E-value=10 Score=42.43 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=41.3
Q ss_pred eEEEEEcCCcceEEEEEcC-CC--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEEE
Q 007076 56 VFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGVG 128 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~-~g--~il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~~~~-~~~~~~I~aIg 128 (619)
.+.+|||||.|+|..+++. +| +++.+.+..+.+-. ..| ..+++ -.+..++++++..+.. .....++.+++
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~e-~~~r~~~~L~~F~~~~~~~~v~~v~~vA 88 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSEE-AMERGLNCLSLFAERLQGFSPANVCIVG 88 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4889999999999999994 34 34444444443211 112 22333 3344555565554332 12335788777
Q ss_pred EcC
Q 007076 129 FAA 131 (619)
Q Consensus 129 is~ 131 (619)
-++
T Consensus 89 TsA 91 (513)
T PRK10854 89 THT 91 (513)
T ss_pred hHH
Confidence 665
No 149
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=76.13 E-value=4 Score=40.60 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC---CC----ccchHHHHHH
Q 007076 492 VQGIAYGTRHIVEHC-NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE---NE----SVLLGAAILG 557 (619)
Q Consensus 492 lEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~---~e----~~alGAAllA 557 (619)
++.+.-.+++.++.. ++.| .++|+.+|=| ..+.|.-++.+|..+...+. .+ ..|.|+|.|.
T Consensus 259 ~~~~l~~l~e~I~~~a~r~g--L~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a~L~ 327 (330)
T COG1548 259 YNALLELLAENIEEKAKRYG--LNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAAKLL 327 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcC--hhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHHHHH
Confidence 333333444444433 3344 4678888866 89999999999998876542 12 3467777664
No 150
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=75.96 E-value=8 Score=40.51 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhh---hCCceeecCC
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI---IGCPIILPRE 545 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Adv---lg~pV~~~~~ 545 (619)
+.++++ ++.+.++-.+.++.+...+. ..+++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 215 ~~diAa---sfq~~l~~~l~~~a~~~~~~-~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 215 LEDVCY---SLQETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 456554 77777776666666655431 2467899999999999999999995 4677776553
No 151
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=75.75 E-value=6.5 Score=40.85 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecC
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 544 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~ 544 (619)
+.+++. ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++
T Consensus 231 ~~~iAa---sfq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 231 KEDIAY---SFQETAFDHLIEKTKRALKD-TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 455554 67777776666666554331 24678999999999999999999987 66777655
No 152
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.23 E-value=6 Score=35.82 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCcceEEEEEcCCCCE
Q 007076 57 FLGVDVGTGSARAGLFDESGKL 78 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~i 78 (619)
+||||+|+..+-.++-|..+.+
T Consensus 3 iL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 3 ILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEECSSEEEEEEEETTTSS
T ss_pred EEEEEeCCCeEEEEEecCCCCe
Confidence 8999999999999999988764
No 153
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=73.86 E-value=13 Score=38.87 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCC
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 545 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~ 545 (619)
+.++++ ++.+.++-.+.++++...+. ..+++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 232 ~~~iA~---~~q~~l~~~l~~~~~~~~~~-~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 232 KADIAA---SFQAAVVDVLVEKTKRALKK-TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 456665 77777776666666555331 24578999999999999999999998 888877653
No 154
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.79 E-value=7.1 Score=44.47 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCC-ce-eecCCCCccchHHHHHHHhhc
Q 007076 504 EHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC-PI-ILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 504 ~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV-~~~~~~e~~alGAAllA~~~~ 561 (619)
+++...++ .|+.|++.||++|-|.+..++.+..+. .+ .-....|++++||++-|+.-.
T Consensus 353 dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 353 DALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 44444433 588999999999999999999998774 33 234578899999999988543
No 155
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=73.54 E-value=9.9 Score=36.89 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=44.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|+||-.|..+-+++++ +++++.+...... ..--+.+...+++++++.++...+|.+|+++.-+
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~------------~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GP 64 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG------------RNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGP 64 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh------------HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 47899999999999998 6677765433222 1222344556677777778888899999997543
No 156
>PRK14878 UGMP family protein; Provisional
Probab=72.98 E-value=9.7 Score=39.93 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=49.8
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQ-SSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~-dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (619)
||||-.+..+-++|+| +++++........ ...+|.... -...-.+.+...+++++++++++..+|.+|+++..+|
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG 76 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYV-PEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG 76 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEecc-cCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 5888888888899997 4557766554331 112333322 2233345566788888888888889999999986443
No 157
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=8.6 Score=40.03 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=54.6
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEe-ecccc-cCCCccccCHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASS-PIQIW-KEGDCIEQSSTD-IWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~-~~~~~-~~~g~~e~dp~~-~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|||.-.-.-+-++|+|+.++++.+... .+... ..+|-...-... =-+.+..++++++..++..+.++.+|+++-.+
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gP 113 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGP 113 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCC
Confidence 8999988888999999999998876421 11111 134433322222 23457778888888888889999999998655
Q ss_pred cc
Q 007076 134 SL 135 (619)
Q Consensus 134 ~~ 135 (619)
|+
T Consensus 114 Gl 115 (405)
T KOG2707|consen 114 GL 115 (405)
T ss_pred Cc
Confidence 54
No 158
>PRK03011 butyrate kinase; Provisional
Probab=71.67 E-value=16 Score=38.97 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=42.7
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccc--c-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--K-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~--~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|.|.-|+||+|.++|+.+ +.+.+....++.. . -+...+| .++- .+.+.+.+++.++...+|.+|+- -+
T Consensus 4 il~inpgststk~a~~~~~-~~~~~~~~~h~~~~~~~~~~~~~q--~~~r---~~~i~~~l~~~g~~~~~l~av~~--Rg 75 (358)
T PRK03011 4 ILVINPGSTSTKIAVFEDE-KPIFEETLRHSAEELEKFKTIIDQ--YEFR---KQAILDFLKEHGIDLSELDAVVG--RG 75 (358)
T ss_pred EEEEcCCCchheEEEEcCC-ceeeeeccccCHHHHhcCCCccch--HHHH---HHHHHHHHHHcCCChhcceEEEE--cC
Confidence 8999999999999999844 4444444444321 1 1122233 2221 24455556666776778888832 14
Q ss_pred cccc
Q 007076 134 SLVD 137 (619)
Q Consensus 134 ~~vd 137 (619)
|+++
T Consensus 76 G~~~ 79 (358)
T PRK03011 76 GLLK 79 (358)
T ss_pred CCCc
Confidence 5654
No 159
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=71.66 E-value=12 Score=38.76 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=38.0
Q ss_pred EEEEEcCCcceEEEEEcCC-C--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEE
Q 007076 57 FLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVGF 129 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~-g--~il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~~~~~-~~~~~I~aIgi 129 (619)
+.+|||||.++|..+++.+ + +++...+.++.+-. ..| ..+++ -.+.+.+++++..+... ....+|.+++-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~v~~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFPVDEVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 5689999999999999953 3 34444444443311 111 22333 33344455555443321 12346666665
Q ss_pred cC
Q 007076 130 AA 131 (619)
Q Consensus 130 s~ 131 (619)
++
T Consensus 79 sa 80 (300)
T TIGR03706 79 AA 80 (300)
T ss_pred HH
Confidence 43
No 160
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=71.05 E-value=10 Score=34.91 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEEcCCc----ceEEEEEcCCCCEEEEEEe
Q 007076 57 FLGVDVGTG----SARAGLFDESGKLLGSASS 84 (619)
Q Consensus 57 ~lgIDiGTT----siKa~l~d~~g~il~~~~~ 84 (619)
+|+|-.|.. .+.++++|++|+++...+.
T Consensus 7 Vla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 7 VLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 888888854 5899999999999988766
No 161
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=69.81 E-value=8.7 Score=33.84 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=26.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCC---ccccCHHHHHHHHHHHHHHH
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD---CIEQSSTDIWHAICAAVDSA 113 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g---~~e~dp~~~~~~~~~~l~~~ 113 (619)
+++||||++.++++++..+ +.....-.++-..+..| ..-.|.+++-+++...++++
T Consensus 1 i~~iDiGs~~~~~~i~~~~-~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-EEEEEEEES----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-CCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 5789999999999999752 22222223332222111 22345566666666666554
No 162
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=68.90 E-value=14 Score=37.59 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CcCEEEEecCCc-CCHHHHHHHHhhhCC-----ceeecCCCCccchHHHHHHHh
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGH--KIDTLLACGGLA-KNPLFLQQHADIIGC-----PIILPRENESVLLGAAILGAV 559 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~--~~~~I~~~GG~a-~s~~~~Qi~Advlg~-----pV~~~~~~e~~alGAAllA~~ 559 (619)
+|=.=|-++-.++.++..+..... ..=.|+++||.- .++.|++-+-+-+-. .++.....+.+|+|||++|+.
T Consensus 237 fr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 237 FRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAAS 316 (336)
T ss_pred HHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhh
Confidence 444455566566666655533222 234699999976 557887755444332 266666788999999999987
Q ss_pred hcc
Q 007076 560 AAK 562 (619)
Q Consensus 560 ~~G 562 (619)
-.+
T Consensus 317 ~~~ 319 (336)
T KOG1794|consen 317 LDN 319 (336)
T ss_pred hcc
Confidence 655
No 163
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=68.72 E-value=20 Score=39.98 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=42.0
Q ss_pred CeEEEEEcCCcceEEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 007076 55 SVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGV 127 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~-~g~--il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~~~~-~~~~~~I~aI 127 (619)
+++.+|||||.|+|.++++. ++. ++...+..+.+-. ..| ..+++ -.+..++++++..+.. .....+|.++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~~~~v~~i~~v 82 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQDIPPSQIRVV 82 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 56899999999999999994 343 3334444433311 112 22233 3344455565554332 1234578888
Q ss_pred EEcC
Q 007076 128 GFAA 131 (619)
Q Consensus 128 gis~ 131 (619)
|-++
T Consensus 83 ATsA 86 (496)
T PRK11031 83 ATAT 86 (496)
T ss_pred EeHH
Confidence 7765
No 164
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=68.43 E-value=11 Score=37.15 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=46.5
Q ss_pred EEEEEcCCcceEEEEEcC-CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076 57 FLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~-~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (619)
+|+||..|..+-+++++. +++++.+...+.+ .... +.+...+++++.+.+....++.+|+++.-+
T Consensus 3 iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~--------r~hs----e~l~~~i~~ll~~~~~~~~dld~iav~~GP 68 (220)
T COG1214 3 ILAIDTSTSALSVALYLADDGKVLAEHTEKLK--------RNHA----ERLMPMIDELLKEAGLSLQDLDAIAVAKGP 68 (220)
T ss_pred EEEEEcChhhhhhheeecCCCcEEEEEEEecc--------ccHH----HHHHHHHHHHHHHcCCCHHHCCEEEEccCC
Confidence 899999999999888885 6778777666554 1112 334455667777777777889999997533
No 165
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=67.77 E-value=14 Score=40.27 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=33.8
Q ss_pred EEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHH-HHHHHHHHHHHcC
Q 007076 60 VDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA-ICAAVDSACSLAN 118 (619)
Q Consensus 60 IDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~-~~~~l~~~~~~~~ 118 (619)
+|||+|-+|+.+|| ++++++...+..+|+. + +++..- +.++++++.++.+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt------~---~dv~~G~~~~a~~~l~~~~~ 52 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE------S---DHLAGGFFNKANEKLNEDLA 52 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc------h---hhhhcchHHHHHHHHHHhcC
Confidence 69999999999999 5577877777666531 2 244444 5566666655543
No 166
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=18 Score=37.84 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHHhhc
Q 007076 489 LATVQGIAYGTRHIVE-HCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~-~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.++.|.++-.+.+..+ .++.. ..+++.+.||.+.|..+++++..+. |..++.++ .+-+.=-+||+|..|.
T Consensus 239 ~sfQ~av~~~L~~kt~rAl~~~--~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~-~~lCtDNaaMIA~ag~ 312 (342)
T COG0533 239 ASFQEAVFDMLVEKTERALKHT--GKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPP-LELCTDNAAMIAYAGL 312 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCC-hHhccchHHHHHHHHH
Confidence 3666666555554443 33433 4678999999999999999999976 34466655 3333334567776554
No 167
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=66.49 E-value=16 Score=39.38 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcC-CHHHHHHHHhhhC-Cceeec
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADIIG-CPIILP 543 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~-s~~~~Qi~Advlg-~pV~~~ 543 (619)
+-++|..+|+++..+-.+-. ....++.|+++||... ++.+++++.+.+. .+|.+-
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~ld 353 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKLD 353 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEec
Confidence 46799999999987766543 4347889999999885 5677788888765 566653
No 168
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=65.32 E-value=15 Score=36.90 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=38.7
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
.|.||+|-|+++.++++ +++++..-+.++. .....+++-..+. .+.... ...+|.+|.|++
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t~-------~~~~~del~~~~~----~l~~~~--~~~~~~~~~iss 62 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLATE-------DLLTEDELGLQLH----NLFDGN--SVRDIDGIVISS 62 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeeccc-------ccccHHHHHHHHH----HHhccc--cccccccceeec
Confidence 68999999999999998 7777666665554 1233334433322 332221 246788888876
No 169
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=65.26 E-value=10 Score=42.10 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=40.8
Q ss_pred eEEEEEcCCcceEEEEEcCC-CC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEEE
Q 007076 56 VFLGVDVGTGSARAGLFDES-GK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGVG 128 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~-g~--il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~~~~-~~~~~~I~aIg 128 (619)
.+.+||+||.|++.+|++.. |. ++...+..+..-. ..| ..+++ -.+...++++++.+.+ +...++|.+|+
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g--~L~~e-ai~R~~~aL~~f~e~~~~~~~~~v~~vA 80 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATG--NLSEE-AIERALSALKRFAELLDGFGAEEVRVVA 80 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccC--CcCHH-HHHHHHHHHHHHHHHHhhCCCCEEEEeh
Confidence 47899999999999999954 43 3333333222111 112 22333 3344455555544332 13457788887
Q ss_pred EcCc
Q 007076 129 FAAT 132 (619)
Q Consensus 129 is~~ 132 (619)
-++.
T Consensus 81 TsA~ 84 (492)
T COG0248 81 TSAL 84 (492)
T ss_pred hHHH
Confidence 7653
No 170
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=65.21 E-value=41 Score=31.54 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=32.5
Q ss_pred EEEEEcCCcceEEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 007076 57 FLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~i---l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~ 116 (619)
+||||-|++++-.++++.+++- +......++ + ..+..+=+..+.+.|.+++++
T Consensus 4 iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~----~---~~~~~~Rl~~I~~~l~~~i~~ 59 (164)
T PRK00039 4 ILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTP----S---DLDLPERLKQIYDGLSELIDE 59 (164)
T ss_pred EEEEccccCceeEEEEEecCCeEEEEEeeEEECC----C---CCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999977653 222222222 1 122223345555666677765
No 171
>PRK12440 acetate kinase; Reviewed
Probab=64.71 E-value=9.5 Score=40.87 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHH-HHHHHHhhhC
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 537 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~-~~Qi~Advlg 537 (619)
+-++|..+|+++..+-.+-. .+ .++.|+++||...|.. +++.+.+-++
T Consensus 297 ~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 297 TLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 35789999999887765543 45 6899999999986655 7766666544
No 172
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.82 E-value=28 Score=39.73 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCC---ce----eecCCCCccchH
Q 007076 480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PI----ILPRENESVLLG 552 (619)
Q Consensus 480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~---pV----~~~~~~e~~alG 552 (619)
.+..++. ++..+++-.+.++...+.+ ...+++|.++||...|+++++-+++.+.. .+ +++....+-++|
T Consensus 665 ~~~~iA~---~fh~~la~~~~e~~~~~a~-~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslG 740 (750)
T COG0068 665 EPEKIAT---KFHNALAEGFAELAVELAK-KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLG 740 (750)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHH-hcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHH
Confidence 4445443 6666666666666655544 23578999999999999999999999874 33 344455566889
Q ss_pred HHHHHH
Q 007076 553 AAILGA 558 (619)
Q Consensus 553 AAllA~ 558 (619)
=|+.|+
T Consensus 741 Q~v~~~ 746 (750)
T COG0068 741 QAVAAA 746 (750)
T ss_pred HHHHHH
Confidence 888773
No 173
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=63.81 E-value=24 Score=32.40 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=34.0
Q ss_pred EEEEEcCCcceEEEEEcCCCCEE---EEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLL---GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il---~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (619)
+||||-|++++-.++++.+++-+ ......++ ...+..+=+..+.+.+.+++++. ++..++|
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~-------~~~~~~~Rl~~I~~~l~~li~~~-----~P~~vai 64 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS-------SKDSLPERLKEIYEELEELIEEY-----NPDEVAI 64 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE----------S--HHHHHHHHHHHHHHHHHHH-------SEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC-------CCCCHHHHHHHHHHHHHHHHHhh-----CCCEEEe
Confidence 68999999999999999765433 33333332 12233444556677777777763 3445555
No 174
>PRK00976 hypothetical protein; Provisional
Probab=63.33 E-value=20 Score=37.46 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=17.3
Q ss_pred eEEEEEcCCcceEEEEEcCC
Q 007076 56 VFLGVDVGTGSARAGLFDES 75 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~ 75 (619)
+++|||=|||.+|.++.+.+
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred eEEeecCCCccEEEEEEcCC
Confidence 38999999999999999433
No 175
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=61.16 E-value=18 Score=32.59 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.7
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeec
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~ 86 (619)
++|||+|....-++++|.+|+++.....+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 689999999999999999997666555443
No 176
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=60.95 E-value=15 Score=40.24 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=40.9
Q ss_pred CeEEEEEcCCcceEEEEEcCCCC--EEEEE--EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGK--LLGSA--SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~--il~~~--~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~ 118 (619)
..+++||+|+|+.|+.++...|. .+... ..+.|..-- .-..+++|+.+.+++...++..+
T Consensus 86 G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m----~gt~~~Lfd~Ia~~l~~F~~~~~ 149 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIM----QGTGEELFDFIARCLADFLDKMG 149 (474)
T ss_pred CCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHH----cCchHHHHHHHHHHHHHHHHHhc
Confidence 34899999999999999996554 22222 222221111 11568899999999999988754
No 177
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=60.53 E-value=20 Score=37.52 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=26.9
Q ss_pred CEEEEecCCc-CCHHHHH------HH------Hhhh-CCceeecCCCCccchHHHHHHH
Q 007076 514 DTLLACGGLA-KNPLFLQ------QH------ADII-GCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 514 ~~I~~~GG~a-~s~~~~Q------i~------Advl-g~pV~~~~~~e~~alGAAllA~ 558 (619)
.-|++.||.+ |+..+.+ -+ .+++ ..||++...++.+.+|||..|.
T Consensus 256 gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 256 GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 4599999987 5444433 11 1233 4699999989999999998875
No 178
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.74 E-value=27 Score=36.30 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=38.3
Q ss_pred eEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 007076 56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVD 120 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~ 120 (619)
..+|||||+++||++-....|+ +.+....++|.-.-.+..-.|++ ++.+.|++++++.++.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg~ivd~~----av~~~Lk~ala~~gi~ 74 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADGKIVDYD----AVASALKRALAKLGIK 74 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccCCcccHH----HHHHHHHHHHHhcCcc
Confidence 4899999999999999996554 33334455553221112245554 4556677777776653
No 179
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=58.58 E-value=24 Score=40.74 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCc-ceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 54 RSVFLGVDVGTG-SARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 54 ~~~~lgIDiGTT-siKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
.+.++|+|-|.- ++|.+++|..|+.+..... || +.|..-++.....|+.++...+ -++.+||+++
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I-yp---------~~p~~~~~~~~~~l~~l~~~~~---Ve~iaIGngT 394 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDDTGKLLDTATI-YP---------HPPVNQSDKAEATLKDLIRKYK---VELIAIGNGT 394 (780)
T ss_pred CcceeecCCccccccEEEEEcCCCceeceeEE-Ec---------CCCccchHHHHHHHHHHHHHhC---ceEEEEecCC
Confidence 346899999974 4999999999999886543 22 1222224555666667666543 3567788876
No 180
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=58.30 E-value=31 Score=31.11 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=24.5
Q ss_pred CeEEEEEcCCcceEEEEEcCCCCEEEEEEee
Q 007076 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~ 85 (619)
..++|||=|||.- .+++|.+|+++...+..
T Consensus 32 ~lIVGiDPG~ttg-iAildL~G~~l~l~S~R 61 (138)
T PF04312_consen 32 YLIVGIDPGTTTG-IAILDLDGELLDLKSSR 61 (138)
T ss_pred CEEEEECCCceeE-EEEEecCCcEEEEEeec
Confidence 5799999999866 55789999999876654
No 181
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=57.62 E-value=8.5 Score=44.34 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=17.3
Q ss_pred eEEEEEcCCcceEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~ 74 (619)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 4899999999999999973
No 182
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=55.81 E-value=10 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=18.9
Q ss_pred CCCCeEEEEEcCCcceEEEEEcC
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~ 74 (619)
|+...++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 44445899999999999999874
No 183
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=55.66 E-value=19 Score=35.98 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=33.6
Q ss_pred EEEEecCCc-CCHHHHHHHHhhh----C---CceeecCCCCccchHHHHHHHhhc
Q 007076 515 TLLACGGLA-KNPLFLQQHADII----G---CPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 515 ~I~~~GG~a-~s~~~~Qi~Advl----g---~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.|-+.|+.- +.+.+.+.+.+.+ + .+|.....+|++.+|||++|+++.
T Consensus 188 ~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 188 TVAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred EEEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHHHHHHhc
Confidence 355666653 7777777666654 3 477777788999999999999863
No 184
>PRK09557 fructokinase; Reviewed
Probab=55.34 E-value=45 Score=34.34 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---------CCceeecC-CCCccchHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPR-ENESVLLGAAILG 557 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---------g~pV~~~~-~~e~~alGAAllA 557 (619)
.+++-.+..+...+-.+.. -..++.|++.||.++.+.+...+-..+ ..+|..+. ..++.++|||+++
T Consensus 223 ~~l~~~~~~La~~l~~l~~-~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVIN-ILDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 4444444444443333322 135788888888876654443222222 23344444 3456788999875
No 185
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=54.57 E-value=45 Score=38.49 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=36.2
Q ss_pred CcCEEEEecCCcCC--HHHH-----H-------HHHhhhCCceeecCCCCccchHHHHHHHhhccc
Q 007076 512 KIDTLLACGGLAKN--PLFL-----Q-------QHADIIGCPIILPRENESVLLGAAILGAVAAKR 563 (619)
Q Consensus 512 ~~~~I~~~GG~a~s--~~~~-----Q-------i~Advlg~pV~~~~~~e~~alGAAllA~~~~G~ 563 (619)
+++.|++.||.+.+ +.+. + +..-+-+.||++...++.+.+|||..+...+..
T Consensus 269 ~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~ 334 (638)
T PRK14101 269 ALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLSN 334 (638)
T ss_pred CCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhcc
Confidence 35778888888743 3332 2 222335789999999999999998887766543
No 186
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=54.49 E-value=70 Score=29.49 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=32.7
Q ss_pred EEEEEcCCcceEEEEEcCCCCEE---EEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076 57 FLGVDVGTGSARAGLFDESGKLL---GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il---~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
+||||-|++++-.++++.+++.+ ......++ ...+..+=+..+.+.+.+++...
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~-------~~~~~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS-------SDAPLPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC-------CCCCHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998544322 22222222 12233333555666777777653
No 187
>CHL00094 dnaK heat shock protein 70
Probab=53.90 E-value=10 Score=43.61 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=18.1
Q ss_pred eEEEEEcCCcceEEEEEcCCCC
Q 007076 56 VFLGVDVGTGSARAGLFDESGK 77 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~ 77 (619)
+++|||+|||+.++++++ +|+
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~ 23 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME-GGK 23 (621)
T ss_pred ceEEEEeCcccEEEEEEE-CCE
Confidence 599999999999999996 344
No 188
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=53.21 E-value=24 Score=38.67 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=52.1
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCC-CC--cCEEEEecCCc-CCHHHHHHHHhhhC-----
Q 007076 472 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIV-----EHCNAHG-HK--IDTLLACGGLA-KNPLFLQQHADIIG----- 537 (619)
Q Consensus 472 ~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l-----~~l~~~g-~~--~~~I~~~GG~a-~s~~~~Qi~Advlg----- 537 (619)
.+|+...+. ++ ..+++.+++.|+=.-.++. -.+.+.+ .. -..|-+.|+.- ..|.+.+++...+.
T Consensus 366 ~l~~~~~~~-~~-r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~ 443 (474)
T KOG1369|consen 366 LLGLETTTT-ED-RKLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGP 443 (474)
T ss_pred hhCCCcCcH-HH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCC
Confidence 345554432 22 2346677777764433321 1233433 22 22344445544 45777777665554
Q ss_pred -CceeecCCCCccchHHHHHHHhhcc
Q 007076 538 -CPIILPRENESVLLGAAILGAVAAK 562 (619)
Q Consensus 538 -~pV~~~~~~e~~alGAAllA~~~~G 562 (619)
..|.+...++.+.+|||++|+++..
T Consensus 444 ~~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 444 SIHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred CceEEEEECCCCccccHHHHHHHHhh
Confidence 5778888899999999999998753
No 189
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=52.99 E-value=43 Score=36.34 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=45.6
Q ss_pred eEEEEEcCCcceEEEEEc--CCCC--EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d--~~g~--il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+++|+||||+++++.+-- .+|+ ++...+++-.-. ..| .-.|.+..-+++.+++.++-..++....+ ..+++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGi-k~G-~I~di~~~~~sI~~av~~AE~mag~~i~~-v~vs~sG 83 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGI-KKG-VIVDLDAAAQSIKKAVEAAERMAGCEIKS-VIVSLSG 83 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCccc-ccc-eEEcHHHHHHHHHHHHHHHHHhcCCCcce-EEEEecc
Confidence 799999999999999877 3342 222222221111 222 45688888888888888887776654332 2345544
No 190
>PLN03184 chloroplast Hsp70; Provisional
Probab=52.89 E-value=14 Score=42.86 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.6
Q ss_pred CeEEEEEcCCcceEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~ 74 (619)
..++|||+|||+.++++++.
T Consensus 39 ~~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CCEEEEEeCcCcEEEEEEEC
Confidence 45899999999999999964
No 191
>PRK07058 acetate kinase; Provisional
Probab=52.75 E-value=19 Score=38.58 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCc-CCHHHHHHHHhhhC
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 537 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg 537 (619)
+-++|..+|+++..+-.+-. .| .++.|+++||.. .|..+++.+.+-+.
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 36899999999988766543 44 689999999998 88888877776654
No 192
>PRK13410 molecular chaperone DnaK; Provisional
Probab=52.04 E-value=13 Score=43.19 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=18.1
Q ss_pred eEEEEEcCCcceEEEEEcCCCC
Q 007076 56 VFLGVDVGTGSARAGLFDESGK 77 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g~ 77 (619)
+++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GK 23 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-Ce
Confidence 5899999999999999974 44
No 193
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=51.74 E-value=23 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 96 e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+.+++++++++.+++.+++++.++++++|.+|=+|.+
T Consensus 12 ~n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 12 ENTPEEILEATRELLEEILERNELSPEDIVSIIFTVT 48 (118)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4678999999999999999999999999999999875
No 194
>PRK13411 molecular chaperone DnaK; Provisional
Probab=51.38 E-value=12 Score=43.24 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=17.2
Q ss_pred eEEEEEcCCcceEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~ 74 (619)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG 21 (653)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999964
No 195
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=14 Score=42.06 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.0
Q ss_pred CeEEEEEcCCcceEEEEEcCCC
Q 007076 55 SVFLGVDVGTGSARAGLFDESG 76 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g 76 (619)
+.++|||+|||+..+++++.++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 3589999999999999999663
No 196
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=49.36 E-value=46 Score=36.43 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCCeEEEEEcCCcceEEEEEc---CCCC-EEEEEEeeccccc-CCCc--cccCHHHHHHHHHHHHHHHHHHc
Q 007076 53 SRSVFLGVDVGTGSARAGLFD---ESGK-LLGSASSPIQIWK-EGDC--IEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 53 ~~~~~lgIDiGTTsiKa~l~d---~~g~-il~~~~~~~~~~~-~~g~--~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
.-+|-|.||.|+|..|.-||. ++|+ ++......+.... .||. ...+|+..-..+..+++-+.+..
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~I 78 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHI 78 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhC
Confidence 347899999999999999998 5677 3444333333333 6664 45789998888888887776554
No 197
>PRK11678 putative chaperone; Provisional
Probab=49.21 E-value=13 Score=41.01 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEcCCCC
Q 007076 57 FLGVDVGTGSARAGLFDESGK 77 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~ 77 (619)
++|||+||||.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 68999999999999998 454
No 198
>PTZ00107 hexokinase; Provisional
Probab=48.81 E-value=92 Score=34.43 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhCCC--CcCEEEEecCCc-CCHHHHHHHHh----hhC---CceeecCCCCccch
Q 007076 487 LYLATVQGIAYGTRHIV-----EHCNAHGH--KIDTLLACGGLA-KNPLFLQQHAD----IIG---CPIILPRENESVLL 551 (619)
Q Consensus 487 ~~rAvlEgiaf~~~~~l-----~~l~~~g~--~~~~I~~~GG~a-~s~~~~Qi~Ad----vlg---~pV~~~~~~e~~al 551 (619)
++|-+.+.|.-....+. -.+.+.+. ..-.|-+.|+.- +.+.+.+.+.. +++ .+|.....++++.+
T Consensus 372 ~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~DGSg~ 451 (464)
T PTZ00107 372 TIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGK 451 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccCchHH
Confidence 45566666654443332 22333343 334677888865 56655555444 443 46777778899999
Q ss_pred HHHHHHHhhc
Q 007076 552 GAAILGAVAA 561 (619)
Q Consensus 552 GAAllA~~~~ 561 (619)
|||++|+.+.
T Consensus 452 GAAl~AA~~~ 461 (464)
T PTZ00107 452 GAAIIAAMVA 461 (464)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 199
>PLN02405 hexokinase
Probab=48.05 E-value=80 Score=35.17 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhCCC--------CcCEEEEecCCc-CCHHHHHHHH----hhhC----CceeecC
Q 007076 487 LYLATVQGIAYGTRHIV-----EHCNAHGH--------KIDTLLACGGLA-KNPLFLQQHA----DIIG----CPIILPR 544 (619)
Q Consensus 487 ~~rAvlEgiaf~~~~~l-----~~l~~~g~--------~~~~I~~~GG~a-~s~~~~Qi~A----dvlg----~pV~~~~ 544 (619)
++|-+.+.|+-....+. -.+.+.+. +...|-+.||.- +.|.+.+.+. ++++ .+|....
T Consensus 394 ~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~ 473 (497)
T PLN02405 394 VVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEH 473 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEE
Confidence 45666666665443332 22333332 123577778865 6666655544 4454 3577777
Q ss_pred CCCccchHHHHHHHhhc
Q 007076 545 ENESVLLGAAILGAVAA 561 (619)
Q Consensus 545 ~~e~~alGAAllA~~~~ 561 (619)
.++++.+|||++|+.+.
T Consensus 474 a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 474 SNDGSGIGAALLAASHS 490 (497)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 88999999999999874
No 200
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=47.90 E-value=47 Score=32.19 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.7
Q ss_pred EEEEEcCCcceEEEEEcCCC
Q 007076 57 FLGVDVGTGSARAGLFDESG 76 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g 76 (619)
+|.||+|-|++|.+++|.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999998763
No 201
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=47.90 E-value=71 Score=32.83 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCcCEEEEecCCcCCHHHHHHHHhhhC---------CceeecCC-CCccchHHHHHHH
Q 007076 511 HKIDTLLACGGLAKNPLFLQQHADIIG---------CPIILPRE-NESVLLGAAILGA 558 (619)
Q Consensus 511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg---------~pV~~~~~-~e~~alGAAllA~ 558 (619)
..++.|++.|+.++.+.+.+.+...+. .+|..... .+++++|||.++.
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 356888887777765554443333321 23444443 4567889998763
No 202
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=47.38 E-value=13 Score=38.13 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLG 80 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~ 80 (619)
++|||=|||.+|+++.+.+++...
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~f 24 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPVF 24 (326)
T ss_pred CccccCCCccEEEEEecCCcceEE
Confidence 479999999999999998887543
No 203
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=47.24 E-value=22 Score=36.79 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcCE-EEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHH
Q 007076 481 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGA 553 (619)
Q Consensus 481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~-g~~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGA 553 (619)
..++..-++-.+++|.-.+|..|+.... . .--+++ |+++||+|.-+-+-+.+++-++.||.+.+.+= .+|+|+
T Consensus 249 s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~ 325 (342)
T COG1077 249 SEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGT 325 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhcc
Confidence 3444444445666666666666665321 1 112345 99999999888888999999999999977552 334444
No 204
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=47.09 E-value=65 Score=34.23 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhC--CceeecCC
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPRE 545 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~~ 545 (619)
+.++|-.++.+...+-.+.. .+..++.|+++||.+.|+.+++.+.+-+. .||.+.+-
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 36777777777766655433 32367899999999988877766666654 68987763
No 205
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=46.79 E-value=62 Score=33.27 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=32.4
Q ss_pred CEEEEecCCc-------CCHHHHHHHHh-------hhCCceeecCCCCccchHHHHHHH
Q 007076 514 DTLLACGGLA-------KNPLFLQQHAD-------IIGCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 514 ~~I~~~GG~a-------~s~~~~Qi~Ad-------vlg~pV~~~~~~e~~alGAAllA~ 558 (619)
.-|+++||.+ ++.-|++-+.| +-..||++.-.+....+|+|..+.
T Consensus 260 GGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~~IPV~vi~~~~~gL~Gaa~~~~ 318 (320)
T COG0837 260 GGVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLADIPVYVILHPQPGLLGAAAALR 318 (320)
T ss_pred CcEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHhhCCEEEEecCCchHHHHHHHhc
Confidence 3589999976 34555555544 335899999888888999987653
No 206
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=45.93 E-value=51 Score=31.81 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCcceEEEEEcCCCCEEEEE
Q 007076 54 RSVFLGVDVGTGSARAGLFDESGKLLGSA 82 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~ 82 (619)
.++.+|+|+||.++-..++|.+|+.++..
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d~~Pvag~ 56 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRDGQPVAGC 56 (277)
T ss_pred CceEEEeecccceEEEEEEcCCCCeEEEE
Confidence 37889999999999999999999877643
No 207
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=45.92 E-value=19 Score=41.60 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred eEEEEEcCCcceEEEEEcCC
Q 007076 56 VFLGVDVGTGSARAGLFDES 75 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~ 75 (619)
+++|||+|||+..+++++..
T Consensus 28 ~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCC
Confidence 59999999999999999753
No 208
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.92 E-value=58 Score=32.74 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=32.1
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHH
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAA 109 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~ 109 (619)
.|.||+|+..+-++++|++ +|.+.-.+.++ ..+|+.+-+.+.+.
T Consensus 229 alvVd~GngHttaalvded-RI~gv~EHHT~--------~Lspekled~I~rf 272 (342)
T COG4012 229 ALVVDYGNGHTTAALVDED-RIVGVYEHHTI--------RLSPEKLEDQIIRF 272 (342)
T ss_pred eEEEEccCCceEEEEecCC-eEEEEeecccc--------cCCHHHHHHHHHHH
Confidence 6889999999999999988 88876655554 45665554444333
No 209
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=45.48 E-value=31 Score=30.24 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 96 e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+.+.+++++++.+++.+++++.++++++|.+|=+|.+
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 12 ENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4568999999999999999999999999999999875
No 210
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=45.02 E-value=31 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 96 e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (619)
+.+.+++++++.+++.+++++.++++++|.+|=+|.+
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 4568999999999999999999999999999999875
No 211
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=45.01 E-value=79 Score=32.28 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHH-HHHhhh------CCceeecC-CCCccchHHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ-QHADII------GCPIILPR-ENESVLLGAAILGA 558 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Q-i~Advl------g~pV~~~~-~~e~~alGAAllA~ 558 (619)
.+++-.+..+...+..+.. -..++.|++.|+.+..+.+.+ +...+- ..+|.... ..+++++|||.++.
T Consensus 212 ~~~~~~~~~la~~l~~l~~-~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKA-TLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 3444444444444433322 135788888888765544433 333222 12344444 34567889998763
No 212
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=44.99 E-value=16 Score=41.81 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=16.6
Q ss_pred EEEEEcCCcceEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~ 74 (619)
++|||+|||+.++++++.
T Consensus 2 viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred EEEEEeCcccEEEEEEEC
Confidence 799999999999999974
No 213
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=44.34 E-value=22 Score=36.55 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred CcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHH
Q 007076 512 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 557 (619)
Q Consensus 512 ~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA 557 (619)
..++|.++|...-.+++.+.++- +|.++...+..+++..|-..+|
T Consensus 242 ~~~~v~LiG~~~L~~~Y~~AL~~-~G~~~~~~d~~~~~~~Gl~~ia 286 (287)
T PF05035_consen 242 LGQPVALIGSGPLCALYARALAA-QGLPVRRVDADEAALAGLWAIA 286 (287)
T ss_dssp SSSEEEEEE-HHHHHHHHHHHHH-TT-EEEEEEHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCHHHHHHHHHHHHH-CCCCceeeCHHHHHHHHHHHHh
Confidence 56899999998877777777665 4888887766666666665554
No 214
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=43.96 E-value=17 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.0
Q ss_pred CeEEEEEcCCcceEEEEEcCCCC
Q 007076 55 SVFLGVDVGTGSARAGLFDESGK 77 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~g~ 77 (619)
+|+||+||||+||--+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 47999999999999999996643
No 215
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=43.68 E-value=16 Score=41.77 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=15.4
Q ss_pred EEEEEcCCcceEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~ 74 (619)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 216
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=43.38 E-value=64 Score=29.23 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCcceEEEEEcCCCCE
Q 007076 57 FLGVDVGTGSARAGLFDESGKL 78 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~i 78 (619)
+||||+|+..+-+++-|..+.+
T Consensus 6 iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 6 ILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred EEEEEeCCCEEEEEEecCCCCE
Confidence 9999999999999999987764
No 217
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=43.01 E-value=44 Score=32.82 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCC-cCCHHHHHHHHhhhCC
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADIIGC 538 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~ 538 (619)
|++--...+.++++|.|++.|++.+-++..||. ..+.++-|+=||+...
T Consensus 163 alMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAE 212 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccCc
Confidence 455555577899999999999887766666776 4566666666665543
No 218
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=42.94 E-value=48 Score=35.57 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCCeEEEEEcCCcceEEEEEcCCCCEEE-EEEeecccc--cCCC--ccccCHHHHHHHHHHHHHHHHHHc
Q 007076 53 SRSVFLGVDVGTGSARAGLFDESGKLLG-SASSPIQIW--KEGD--CIEQSSTDIWHAICAAVDSACSLA 117 (619)
Q Consensus 53 ~~~~~lgIDiGTTsiKa~l~d~~g~il~-~~~~~~~~~--~~~g--~~e~dp~~~~~~~~~~l~~~~~~~ 117 (619)
.+.|.+-||-|+|+.|+-+|--+-.... .-......+ ..|| ....||++.-+.+..+++.+.+..
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~v 134 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFV 134 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhC
Confidence 4579999999999999999873322100 000001112 1555 356789988888888887776554
No 219
>PLN02914 hexokinase
Probab=42.22 E-value=1.2e+02 Score=33.72 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCC--------CcCEEEEecCCc-CCHHHHHHHHhh----hC---
Q 007076 479 SSEKQLALLYLATVQGIAYGTRHIV-----EHCNAHGH--------KIDTLLACGGLA-KNPLFLQQHADI----IG--- 537 (619)
Q Consensus 479 ~~~~~l~~~~rAvlEgiaf~~~~~l-----~~l~~~g~--------~~~~I~~~GG~a-~s~~~~Qi~Adv----lg--- 537 (619)
.+.++. +++|-+.+.|.-....+. -.+++.+. +.-.|-+.|+.- +.+.+.+.+.+. +|
T Consensus 385 ~~~~d~-~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~ 463 (490)
T PLN02914 385 ASLSAR-RRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLEL 463 (490)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCccc
Confidence 344443 345566666654433332 22333332 123566778865 666666555544 43
Q ss_pred -CceeecCCCCccchHHHHHHHhhc
Q 007076 538 -CPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 538 -~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.+|+....++++.+|||++|+.+.
T Consensus 464 ~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 464 SKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred CCcEEEEEccCchHHHHHHHHHHhh
Confidence 357777788999999999998753
No 220
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=42.19 E-value=89 Score=33.73 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCc-CCHHHHHHHHhhhC
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 537 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg 537 (619)
-++|..+|+++..+-.+-. .+..++.|+++||.. .++.+++.+.+-++
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 5899999999988766543 454689999999999 78888877777654
No 221
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=42.15 E-value=1.1e+02 Score=27.47 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.3
Q ss_pred EEEEcCCcceEEEEEcCCCCE
Q 007076 58 LGVDVGTGSARAGLFDESGKL 78 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~i 78 (619)
||||+|+..+-.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 589999999999999887754
No 222
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=42.14 E-value=21 Score=41.05 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.4
Q ss_pred CeEEEEEcCCcceEEEEEcC
Q 007076 55 SVFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~ 74 (619)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 36999999999999999863
No 223
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=41.79 E-value=37 Score=34.34 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=32.4
Q ss_pred EEEEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHH
Q 007076 58 LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA 105 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~ 105 (619)
+|||-||-++-+.-|| +.|+++.....+... ++.+|.-+.+-
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde------Vtk~p~iiv~i 43 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE------VTKSPRIIVDI 43 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH------hccCchHHHHH
Confidence 4899999999888887 679999888777752 56777665543
No 224
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=40.82 E-value=1.3e+02 Score=28.54 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcC
Q 007076 498 GTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 577 (619)
Q Consensus 498 ~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~ 577 (619)
.++.+++.+++.|+++. .+...+++++|.|...+....... .+-|+.+=+.|..+
T Consensus 58 E~~~l~~yL~~~gldv~------------~~i~~i~~~l~~~~~~p~~~~~~~--------~~~g~~g~~~di~~----- 112 (179)
T PF06757_consen 58 EVKALLDYLESAGLDVY------------YYINQINDLLGLPPLNPTPSLSCS--------RGGGLNGFVDDILA----- 112 (179)
T ss_pred HHHHHHHHHHHCCCCHH------------HHHHHHHHHHcCCcCCCCcccccc--------cCCCHHHHHHHHHH-----
Confidence 34667777887777654 478999999999876544222111 11222111222221
Q ss_pred CeEEcCCCChhhHHHHHHHH---HHHHHHHHHHHH--HHHHHHHh
Q 007076 578 GQVIHPSKDPKVKKYHDAKY---LIFRELFEQQVS--QRSIMAQA 617 (619)
Q Consensus 578 ~~~~~P~~~~~~~~~y~~~y---~~y~~l~~~~~~--~~~~~~~~ 617 (619)
..| ..+.++.|+++. +.|++++++++. ++++++..
T Consensus 113 ---~lP--~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~ 152 (179)
T PF06757_consen 113 ---LLP--RDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNAL 152 (179)
T ss_pred ---HCC--HHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHH
Confidence 247 667777777776 467777776663 45555543
No 225
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=40.30 E-value=98 Score=33.46 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCc-CCHHHHHHHHhhhC
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 537 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg 537 (619)
-++|..+|+++..+-.+-. ....++-|+++||.. .|+.+++.+.+-+.
T Consensus 300 lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 300 LALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 5889999999887766643 434789999999988 88999888877654
No 226
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=39.32 E-value=79 Score=31.93 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=46.4
Q ss_pred ceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCc--CEEEEecCC
Q 007076 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE----HCNAHGHKI--DTLLACGGL 522 (619)
Q Consensus 449 gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~----~l~~~g~~~--~~I~~~GG~ 522 (619)
.+.|+| .|||+|..|. +.|+...-. +.+ +-+.-.|-..+.+++.++ .+++.|... =.|=++||.
T Consensus 185 DVRfLP------NP~y~peLRp-~tG~d~~V~--dYv-~~~~e~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGq 254 (286)
T COG1660 185 DVRFLP------NPHYDPELRP-LTGLDKPVA--DYV-MSQPEVEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQ 254 (286)
T ss_pred EecccC------CCccccccCc-CCCCChhHH--HHH-HcChHHHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCc
Confidence 456677 6999999985 455554321 111 011222223344444443 445555321 135578999
Q ss_pred cCCHHHHHHHHhhhCC
Q 007076 523 AKNPLFLQQHADIIGC 538 (619)
Q Consensus 523 a~s~~~~Qi~Advlg~ 538 (619)
-||-.+.+-+|..+..
T Consensus 255 HRSV~iae~La~~l~~ 270 (286)
T COG1660 255 HRSVYIAEQLAEYLRA 270 (286)
T ss_pred cchHHHHHHHHHHHHh
Confidence 9999999999888765
No 227
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=39.13 E-value=35 Score=38.99 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.9
Q ss_pred CeEEEEEcCCcceEEEEEc
Q 007076 55 SVFLGVDVGTGSARAGLFD 73 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d 73 (619)
..++|||+|||+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999999885
No 228
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=39.11 E-value=55 Score=29.84 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.2
Q ss_pred eEEEEEcCCcceEEEEEcCCC
Q 007076 56 VFLGVDVGTGSARAGLFDESG 76 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~~g 76 (619)
.+||+|+||-.|-+++-|..+
T Consensus 3 ~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 3 RILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred eEEEEecCCceEEEEEecCCC
Confidence 489999999999999999776
No 229
>PRK12397 propionate kinase; Reviewed
Probab=38.37 E-value=42 Score=36.17 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCc-CCHHHHHHHHhhh
Q 007076 489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 536 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advl 536 (619)
+-++|..+|+++..+-.+-. .| .++-|+++||.. ++..+++.+.+-|
T Consensus 298 ~lA~d~f~yri~k~IGa~~a~lg-gvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 298 KLALTLFAERIRATIGSYIMQMG-GLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCchhhCCHHHHHHHHhhh
Confidence 35889999999887766644 33 689999999988 5566665555543
No 230
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=37.98 E-value=93 Score=32.15 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC-HHHHHHHHhhhC----------CceeecCC-CCccchHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIG----------CPIILPRE-NESVLLGAAILG 557 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s-~~~~Qi~Advlg----------~pV~~~~~-~e~~alGAAllA 557 (619)
.+++-.+..+...+..+.. -..++.|++.|+.++. +.+.+.+...+. .+|.+... .+++++|||.++
T Consensus 230 ~i~~~~~~~L~~~i~~~~~-~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 230 DSYREVARWAGAGLADLAS-LFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 5555555555555544433 2467888888887753 444443332221 23445443 456788999886
Q ss_pred H
Q 007076 558 A 558 (619)
Q Consensus 558 ~ 558 (619)
.
T Consensus 309 ~ 309 (318)
T TIGR00744 309 R 309 (318)
T ss_pred H
Confidence 5
No 231
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=37.85 E-value=27 Score=40.52 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=17.0
Q ss_pred eEEEEEcCCcceEEEEEcC
Q 007076 56 VFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 56 ~~lgIDiGTTsiKa~l~d~ 74 (619)
.++|||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4899999999999999863
No 232
>PRK13322 pantothenate kinase; Reviewed
Probab=37.58 E-value=28 Score=34.96 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~ 558 (619)
.++.|++..+..+++.+++. +. .-+|+++||.++ +++..+.. +.+ .++-...|-..++.
T Consensus 184 G~~~~~~~~i~~~i~~~~~~~~~-~~~vilTGG~a~------~l~~~l~~-~~~--~~~LvL~GL~~~~~ 243 (246)
T PRK13322 184 GCLLMLRGFIESQLEQARELWGP-DFEIFLTGGDAP------LLADHLPQ-ARV--VPDLVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCC-CEE--CCCcHHHHHHHHHh
Confidence 66666666666677766553 32 347999999753 34455555 333 35666677666553
No 233
>PRK12408 glucokinase; Provisional
Probab=37.12 E-value=72 Score=33.55 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.6
Q ss_pred CcCE-EEEecCCcCC--HHHHH---HHH--------hhh-CCceeecCCCCccchHHHHHHH
Q 007076 512 KIDT-LLACGGLAKN--PLFLQ---QHA--------DII-GCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 512 ~~~~-I~~~GG~a~s--~~~~Q---i~A--------dvl-g~pV~~~~~~e~~alGAAllA~ 558 (619)
.++. |++.||.+.+ +.+.. +.+ ..+ ..||+.....++..+|||.++.
T Consensus 271 dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 271 GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWYL 332 (336)
T ss_pred CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHHH
Confidence 4566 9999998743 44433 111 122 5678887767888999986653
No 234
>PLN02596 hexokinase-like
Probab=36.55 E-value=75 Score=35.33 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=52.1
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCC---CCcCEEEEecCCc-CCHHHHHH----HHhhhC--
Q 007076 473 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHG---HKIDTLLACGGLA-KNPLFLQQ----HADIIG-- 537 (619)
Q Consensus 473 ~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~-----~l~~~g---~~~~~I~~~GG~a-~s~~~~Qi----~Advlg-- 537 (619)
+|+.. ++.++. +++|-|.+.|.-....+.- .+.+.| .+...|-+.|+.- +.|.+.+. +.+++|
T Consensus 382 l~~~~-~~~~d~-~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~ 459 (490)
T PLN02596 382 FGITD-STPMAR-EVVAEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSE 459 (490)
T ss_pred cCCCC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcc
Confidence 45532 234443 3567777777655444332 234443 1234577778865 66655444 445554
Q ss_pred --CceeecCCCCccchHHHHHHHhhc
Q 007076 538 --CPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 538 --~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.+|.+...++++.+|||++|+...
T Consensus 460 ~~~~i~~~~s~DGSG~GAAl~AA~~~ 485 (490)
T PLN02596 460 LSDNVVIEHSHGGSGAGALFLAACQT 485 (490)
T ss_pred cCCcEEEEEccCchhHHHHHHHHhhc
Confidence 257666678899999999998754
No 235
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=36.47 E-value=2.2e+02 Score=26.05 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=32.1
Q ss_pred eEEEEEcCCcc-----eEEEEEcCCCCEE-EEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076 56 VFLGVDVGTGS-----ARAGLFDESGKLL-GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (619)
Q Consensus 56 ~~lgIDiGTTs-----iKa~l~d~~g~il-~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~ 118 (619)
-+|.||+.||+ +--++++ +++++ .......+ ..++-+=-..+.+.|+.+++...
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~k--------~Ks~~ER~k~ias~Lk~ii~~~d 62 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKHK--------SKSFFERAKSIASELKTIIQKYD 62 (159)
T ss_pred eeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecCc--------ccCHHHHHHHHHHHHHHHHHHhC
Confidence 38999999998 7788887 44443 33222222 23444444455666666666543
No 236
>PRK07157 acetate kinase; Provisional
Probab=36.37 E-value=47 Score=35.77 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHH-HHHHHHhhhC
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 537 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~-~~Qi~Advlg 537 (619)
-++|..+|+++..+-.+-. .+..++.|+++||...|.. +++.+.+-++
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 5789999999988766643 4546899999999987665 7766666543
No 237
>PRK13328 pantothenate kinase; Reviewed
Probab=36.26 E-value=37 Score=34.25 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~ 558 (619)
.++-|++..+..+++.+++.-...-.|+++||.+ ++++..+..+..+ .++-...|-+.++.
T Consensus 192 G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda------~~l~~~l~~~~~~--~p~LvL~GL~~i~~ 252 (255)
T PRK13328 192 GCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAA------DAVAPALTVPHTR--HDNLVLLGLALIAA 252 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH------HHHHhhCCCCCEE--CCCcHHHHHHHHHh
Confidence 5666666666666666655321234799999975 4566666766655 35577778777654
No 238
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=35.22 E-value=1.1e+02 Score=30.06 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=49.9
Q ss_pred EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (619)
+|+.=....+-+.++ .+|++++..++.|-+-|..|+...|. ..-...+..++++.++++++...+|..|..+-
T Consensus 5 lG~EGSANKlGvGiv-~~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyTK 78 (336)
T KOG2708|consen 5 LGLEGSANKLGVGIV-RDGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYTK 78 (336)
T ss_pred EecccccccceeeEE-ecceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEcC
Confidence 444433333444444 35899998877765445666666554 44556788899999999999899999998864
No 239
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=34.98 E-value=1e+02 Score=32.64 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHHHH
Q 007076 511 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGA 558 (619)
Q Consensus 511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAllA~ 558 (619)
..+++|+++||+|+ ++...+.+.++.- .+++.++ +-|+|...++.
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 36789999999985 5778888888864 4545444 55778877765
No 240
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=34.33 E-value=32 Score=39.73 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=19.1
Q ss_pred CCCCeEEEEEcCCcceEEEEEcC
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~ 74 (619)
|.++|+||+|||+.||-=+++..
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~ 23 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVED 23 (1088)
T ss_pred CCcceEEEeeccccceeeEEeec
Confidence 56789999999999998666653
No 241
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=1.1e+02 Score=32.25 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHHhhc
Q 007076 489 LATVQGIAYGTRHIV----EHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 489 rAvlEgiaf~~~~~l----~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
..+.+.++..+.+-. +.+......++.++++||.|.|.++...+.++. |.....+. +.-..=-++|+|..|+
T Consensus 278 a~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp-~~lCsDNgiMIaw~Gi 356 (405)
T KOG2707|consen 278 ASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPP-PSLCSDNGIMIAWTGI 356 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCC-hhhcCCcchhhhhHHH
Confidence 356666665544322 222222445678999999999999998888874 44443433 2222224457776665
Q ss_pred c
Q 007076 562 K 562 (619)
Q Consensus 562 G 562 (619)
-
T Consensus 357 e 357 (405)
T KOG2707|consen 357 E 357 (405)
T ss_pred H
Confidence 3
No 242
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=33.53 E-value=32 Score=36.07 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.5
Q ss_pred EEEEcCCcceEEEEEcCCCCEE
Q 007076 58 LGVDVGTGSARAGLFDESGKLL 79 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il 79 (619)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997764 456544
No 243
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=33.18 E-value=1.1e+02 Score=31.19 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcC-----CHHH---HHHHHhh-hCCceeecCC---CCccchHHHH
Q 007076 488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-----NPLF---LQQHADI-IGCPIILPRE---NESVLLGAAI 555 (619)
Q Consensus 488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~-----s~~~---~Qi~Adv-lg~pV~~~~~---~e~~alGAAl 555 (619)
|+++.|++.-.++.+ +.. ..++-|+++|-.++ +++. ...++.. ++..|..... .-.+|-|||+
T Consensus 254 ~~~l~e~vvK~v~tl---lps--~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAi 328 (374)
T COG2441 254 YNALIEGVVKDVFTL---LPS--TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAI 328 (374)
T ss_pred HHHHHHHHHHHHHHh---ccc--cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhh
Confidence 779999987444433 332 34567999999887 3322 2222333 4555554331 2245889999
Q ss_pred HH-HhhccccCCHHHHH
Q 007076 556 LG-AVAAKRYSSLIEAM 571 (619)
Q Consensus 556 lA-~~~~G~~~~~~~a~ 571 (619)
+| +.+-|.|..+-+.+
T Consensus 329 iAnaiAGG~yrelvd~l 345 (374)
T COG2441 329 IANAIAGGLYRELVDVL 345 (374)
T ss_pred hhhhhcchhHHHHHHHH
Confidence 88 45667776554443
No 244
>PRK09698 D-allose kinase; Provisional
Probab=32.16 E-value=1.8e+02 Score=29.71 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCH-H----HHHHHHhhh-------CCceeecC-CCCccchHHHH
Q 007076 489 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP-L----FLQQHADII-------GCPIILPR-ENESVLLGAAI 555 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~-~----~~Qi~Advl-------g~pV~~~~-~~e~~alGAAl 555 (619)
+...+.++..+..++..+ .++.|++.|+.++.. . +.+.+.+.+ ..+|.+.. ..+++++|||.
T Consensus 218 ~~~~~~la~~l~~li~~l-----dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 292 (302)
T PRK09698 218 QSLLENLARAIATSINLF-----DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAI 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHH
Confidence 355666776666665543 567888888877653 2 223333322 12344444 34567889998
Q ss_pred HHH
Q 007076 556 LGA 558 (619)
Q Consensus 556 lA~ 558 (619)
++.
T Consensus 293 ~~~ 295 (302)
T PRK09698 293 LAH 295 (302)
T ss_pred HHH
Confidence 864
No 245
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=31.82 E-value=31 Score=39.49 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.1
Q ss_pred EEEEEcCCcceEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~ 74 (619)
++|||+|||+.++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 479999999999999974
No 246
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=31.73 E-value=1.2e+02 Score=30.57 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=34.0
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHH
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAA 109 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~ 109 (619)
++.||||.+.+-++++ .+++|.....+-+. ..+++.+++-+.+.
T Consensus 169 ~~~vniGN~HTlaa~v-~~~rI~GvfEHHT~--------~l~~~kL~~~l~~l 212 (254)
T PF08735_consen 169 IIVVNIGNGHTLAALV-KDGRIYGVFEHHTG--------MLTPEKLEEYLERL 212 (254)
T ss_pred eEEEEeCCccEEEEEE-eCCEEEEEEecccC--------CCCHHHHHHHHHHH
Confidence 7899999999999999 78888887666554 56777776654444
No 247
>PRK07157 acetate kinase; Provisional
Probab=30.97 E-value=1.8e+02 Score=31.38 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCcceEEEEEcC-CCCEEEEE
Q 007076 57 FLGVDVGTGSARAGLFDE-SGKLLGSA 82 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~-~g~il~~~ 82 (619)
+|.|..|+||+|..|||. +.+++...
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASG 31 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEE
Confidence 999999999999999995 34555543
No 248
>PRK07058 acetate kinase; Provisional
Probab=30.89 E-value=1.5e+02 Score=31.84 Aligned_cols=31 Identities=26% Similarity=0.653 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCcceEEEEEcCCC---CEEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDESG---KLLGSA 82 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~~g---~il~~~ 82 (619)
|+++++|.|..|+||+|..|||.+. +++...
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G 34 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKG 34 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEE
Confidence 4568999999999999999999543 455443
No 249
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=30.14 E-value=67 Score=33.09 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCcCE--EEEecCCcCCHHHHHHHHhhhCCceeecC-C-CCccchHHHH
Q 007076 489 LATVQGIAYGTRHIVEHCN-AHGHKIDT--LLACGGLAKNPLFLQQHADIIGCPIILPR-E-NESVLLGAAI 555 (619)
Q Consensus 489 rAvlEgiaf~~~~~l~~l~-~~g~~~~~--I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~-~e~~alGAAl 555 (619)
+++++-+...+.+.++.+. +.+..+.. +++.||+ .+.+..-+|+.+|.+..+++ . .-.+|+|+++
T Consensus 214 ~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~--g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 214 EGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGA--GPLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--EEEE-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3777777776666666552 23444444 4444554 47999999999999765544 3 3467888875
No 250
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=30.01 E-value=74 Score=34.36 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCcceEEEEEcCC--CCEEEE
Q 007076 57 FLGVDVGTGSARAGLFDES--GKLLGS 81 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~--g~il~~ 81 (619)
+|.|..|+||+|..|||.+ .+++..
T Consensus 6 iLvlN~GSSSlKf~lf~~~~~~~~l~~ 32 (404)
T TIGR00016 6 ILVINAGSSSLKFALFDYTNGETVLLS 32 (404)
T ss_pred EEEEECChHhheEEEEecCCCCceEEE
Confidence 9999999999999999953 455543
No 251
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.00 E-value=2.2e+02 Score=29.51 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=19.6
Q ss_pred CcCEEEEe-cCCcCCHHHH----HHHHhhhC--Ccee
Q 007076 512 KIDTLLAC-GGLAKNPLFL----QQHADIIG--CPII 541 (619)
Q Consensus 512 ~~~~I~~~-GG~a~s~~~~----Qi~Advlg--~pV~ 541 (619)
+++-|+++ ||||..++|+ .+.-.|.. .||.
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEE
Confidence 45666666 9999999998 34444444 4553
No 252
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=29.89 E-value=2.3e+02 Score=29.32 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC-HHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhcc
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 562 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s-~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G 562 (619)
-+++-.+..+...++.+.. .....+|.+.||.+++ +.|..++=.-+..|. ......||.++|....+
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHhhh
Confidence 6777777888888888752 2356789999999976 888877776666555 33456789888876544
No 253
>PRK12440 acetate kinase; Reviewed
Probab=29.70 E-value=1.8e+02 Score=31.28 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCcceEEEEEcC-CCCEEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDE-SGKLLGSA 82 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~-~g~il~~~ 82 (619)
|+++++|.|..|+||+|..|||. ..+++...
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G 32 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSG 32 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEE
Confidence 67889999999999999999994 44555443
No 254
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=29.65 E-value=38 Score=35.54 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.5
Q ss_pred EEEEcCCcceEEEEEcCCCCEEE
Q 007076 58 LGVDVGTGSARAGLFDESGKLLG 80 (619)
Q Consensus 58 lgIDiGTTsiKa~l~d~~g~il~ 80 (619)
+|||+||+++++... .+|.++.
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLN 27 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEc
Confidence 799999999999765 5565554
No 255
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=29.38 E-value=2.3e+02 Score=26.32 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=32.2
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEE---EEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLG---SASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~---~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~ 116 (619)
+||||=|+..+-.++++.++.-+. .....++ .++..+=+..+.+.+.+++++
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~~v~~G~I~t~--------~~~~~~RL~~I~~~l~~~i~~ 55 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK--------VDDLPSRLKLIYAGVTEIITQ 55 (156)
T ss_pred CEeECcccccccEEEEEecCCeEEEEEeeEEECC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999996554322 2222221 123444455666667777765
No 256
>PLN02362 hexokinase
Probab=29.00 E-value=3.2e+02 Score=30.67 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=32.7
Q ss_pred EEEEecCCc-CCHHHHHHHHh----hhCC----ceeecCCCCccchHHHHHHHhhc
Q 007076 515 TLLACGGLA-KNPLFLQQHAD----IIGC----PIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 515 ~I~~~GG~a-~s~~~~Qi~Ad----vlg~----pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.|-+.||.- +.|.+.+.+.+ +++. .|.....++++.+|||++|+.+.
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~ 499 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYS 499 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHH
Confidence 566778865 66666555544 4432 55665678899999999999874
No 257
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=26.82 E-value=1e+02 Score=32.93 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=48.1
Q ss_pred eEEEEEcCCc--ceEEEEEcCCC-----CEEEEEEeecccc------c--CCCccccCHH-------HHHHHHHHHHHHH
Q 007076 56 VFLGVDVGTG--SARAGLFDESG-----KLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSA 113 (619)
Q Consensus 56 ~~lgIDiGTT--siKa~l~d~~g-----~il~~~~~~~~~~------~--~~g~~e~dp~-------~~~~~~~~~l~~~ 113 (619)
++||+=-||| ++-+++++-+| +++.....||+.. . .+.. -+++ ++=+...++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~~--~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGGA--DELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887 47777777544 2455566777521 1 1111 1122 2334566778888
Q ss_pred HHHcCCCCCCEEEEEEcCc
Q 007076 114 CSLANVDGEEVKGVGFAAT 132 (619)
Q Consensus 114 ~~~~~~~~~~I~aIgis~~ 132 (619)
+++.++++.+|..||..+|
T Consensus 81 ~~~~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 81 LAEAGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHcCCCccCccEEEeCCc
Confidence 8888888899999998765
No 258
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=26.23 E-value=49 Score=35.63 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=21.6
Q ss_pred EEEEEcCCcceEEEEEcC-CCCEEEEE
Q 007076 57 FLGVDVGTGSARAGLFDE-SGKLLGSA 82 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~-~g~il~~~ 82 (619)
+|.|..|+||+|..|||. +.+++.+.
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g 28 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASG 28 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeec
Confidence 789999999999999995 45666543
No 259
>PRK12379 propionate/acetate kinase; Provisional
Probab=25.95 E-value=96 Score=33.42 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcC-CHHHHHHHHhhh
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADII 536 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~-s~~~~Qi~Advl 536 (619)
-++|..+|+++..+-.+-. .+ .++-|+++||... +..+++.+.+-|
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 5789999999887766543 55 7899999999884 456666665554
No 260
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=25.47 E-value=4.3e+02 Score=27.92 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=53.8
Q ss_pred EEEEecC-CcCC---HHHHHHHHhhhCCceeecCCCC-ccchHHH-HHHHhhccccCCHHHHHHHhhcCCeEEcCCCChh
Q 007076 515 TLLACGG-LAKN---PLFLQQHADIIGCPIILPRENE-SVLLGAA-ILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPK 588 (619)
Q Consensus 515 ~I~~~GG-~a~s---~~~~Qi~Advlg~pV~~~~~~e-~~alGAA-llA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~ 588 (619)
.|+-+|| ++++ ....-+++...|.||..=.... .+-.|.| ++.+.++.+..+.+++.+.+....-.|.+ -|.
T Consensus 79 Di~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~~l~~~g~~Flf--Ap~ 156 (338)
T COG0547 79 DIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAARALEETGIGFLF--APA 156 (338)
T ss_pred CeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEE--ccc
Confidence 4677777 4443 2334566777899997644443 4445776 77888888888999988888777777777 555
Q ss_pred hHHHHHHHH
Q 007076 589 VKKYHDAKY 597 (619)
Q Consensus 589 ~~~~y~~~y 597 (619)
.+..++...
T Consensus 157 ~hp~~k~v~ 165 (338)
T COG0547 157 YHPAMKHVA 165 (338)
T ss_pred cCHHHHHHH
Confidence 555544433
No 261
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=24.79 E-value=1.9e+02 Score=29.71 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCCCCCCCCcEeEEcCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCC---cCEEEEecCCcCCHHHHHHHH
Q 007076 460 RSPIADPKSKGIICGMTLDSSEKQLAL---LYLATVQGIAYGTRHIVEHCNAHGHK---IDTLLACGGLAKNPLFLQQHA 533 (619)
Q Consensus 460 r~P~~d~~a~g~~~Gl~~~~~~~~l~~---~~rAvlEgiaf~~~~~l~~l~~~g~~---~~~I~~~GG~a~s~~~~Qi~A 533 (619)
..|||++..|. +.|+...-. +.+. -.+..++-+.=-+...+..+.+.|.. + .|=++||.-||-.+.+-+|
T Consensus 192 pNP~~~~~lr~-~tG~d~~v~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-~igCtGG~HRSV~~~e~l~ 267 (288)
T PRK05416 192 PNPHYDPELRP-LTGLDKPVA--DYVLAQPEVEEFLDKIRDLLEFWLPGYEREGKSYLTI-AIGCTGGQHRSVAIAERLA 267 (288)
T ss_pred CCCCCChhhcc-CCCCCHHHH--HHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-EEecCCCcccHHHHHHHHH
Confidence 47999998873 444443210 1100 02344555544445555666555532 3 4668899999999999999
Q ss_pred hhhC
Q 007076 534 DIIG 537 (619)
Q Consensus 534 dvlg 537 (619)
+.+.
T Consensus 268 ~~l~ 271 (288)
T PRK05416 268 ERLS 271 (288)
T ss_pred HHHh
Confidence 9983
No 262
>PRK12379 propionate/acetate kinase; Provisional
Probab=24.75 E-value=2.8e+02 Score=29.90 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCcceEEEEEcCC-CCEEEEE
Q 007076 54 RSVFLGVDVGTGSARAGLFDES-GKLLGSA 82 (619)
Q Consensus 54 ~~~~lgIDiGTTsiKa~l~d~~-g~il~~~ 82 (619)
.+++|.|..|+||+|..|||.+ .+++...
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G 33 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSG 33 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEE
Confidence 4689999999999999999953 4555543
No 263
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=24.25 E-value=1.8e+02 Score=29.59 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh--CCceeecC
Q 007076 490 ATVQGIAYGTRHIVE-HCNAHGHKIDTLLACGGLAKNPLFLQQHADII--GCPIILPR 544 (619)
Q Consensus 490 AvlEgiaf~~~~~l~-~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl--g~pV~~~~ 544 (619)
++.+.++-.+...+. .++. ..++.|.++||.+.|..+++.+.+.. +.++..++
T Consensus 200 s~q~~~~~~l~~~~~~a~~~--~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 200 SFQEAIADHLAKKAPRALEK--PRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHh--hcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 445544433333333 2222 35789999999999999999877554 66666655
No 264
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=23.91 E-value=71 Score=34.87 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=37.9
Q ss_pred CeEEEEEcCCcceEEEEEcCC---CC---EEEEEEeecccc-c-CCCcc--ccCHHHHHHHHHHHHHHHHHH
Q 007076 55 SVFLGVDVGTGSARAGLFDES---GK---LLGSASSPIQIW-K-EGDCI--EQSSTDIWHAICAAVDSACSL 116 (619)
Q Consensus 55 ~~~lgIDiGTTsiKa~l~d~~---g~---il~~~~~~~~~~-~-~~g~~--e~dp~~~~~~~~~~l~~~~~~ 116 (619)
.|.+.||.|+|+.|+-||.-. .+ ++......-+.. . .||.. ..+|+.+.+.+..++..+.+.
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~~~~~~~~~~l~~ll~~a~~~ 79 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFADNPEKAAESLQPLLDFAKSV 79 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhCCChHHHHHHHHHHHHHHHhh
Confidence 689999999999999999832 22 222222211111 2 56643 346777777777777665543
No 265
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=23.89 E-value=62 Score=34.03 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=14.1
Q ss_pred EEEEEcCCcceEEEEEc-CCCC
Q 007076 57 FLGVDVGTGSARAGLFD-ESGK 77 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d-~~g~ 77 (619)
.+|||+||++++. ++ .+|.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~ 25 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI 25 (335)
T ss_pred eEEEEcccccEEE--EECCCcE
Confidence 5899999999973 44 4453
No 266
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=23.69 E-value=1.3e+02 Score=27.45 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLG 80 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~ 80 (619)
+++||+|+-|.-.++++.+++.+.
T Consensus 3 i~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 3 ILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred EEEEecCCCceeEEEEEcCCCeEE
Confidence 899999999999999997665443
No 267
>PRK13328 pantothenate kinase; Reviewed
Probab=23.58 E-value=3.5e+02 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.2
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLG 80 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~ 80 (619)
+|-||+|-|.+|-+++|.+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcCCCceee
Confidence 788999999999999996655543
No 268
>PRK00292 glk glucokinase; Provisional
Probab=23.27 E-value=1.9e+02 Score=29.97 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=29.7
Q ss_pred CcC-EEEEecCCcC-C-HHHHH-----HH------Hhh-hCCceeecCCCCccchHHHHHHH
Q 007076 512 KID-TLLACGGLAK-N-PLFLQ-----QH------ADI-IGCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 512 ~~~-~I~~~GG~a~-s-~~~~Q-----i~------Adv-lg~pV~~~~~~e~~alGAAllA~ 558 (619)
.++ .|++.||.+. + +.+.. .+ .+. -..||++....++..+|||.++.
T Consensus 253 ~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 253 GARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred cCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 455 7888888873 3 32222 22 223 25677766667888999998865
No 269
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.06 E-value=2.8e+02 Score=28.52 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEec-CCcCC-HHHHHHHHhhhC---------CceeecCC--CCccchHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACG-GLAKN-PLFLQQHADIIG---------CPIILPRE--NESVLLGAAIL 556 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~G-G~a~s-~~~~Qi~Advlg---------~pV~~~~~--~e~~alGAAll 556 (619)
.+++-.+..+...+-.+... ..++.|++.| |.+.. +.+.+.+...+. .++..... .+++++|||++
T Consensus 226 ~~~~~~~~~la~~ianl~~~-~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~ 304 (314)
T COG1940 226 EVIERAADYLARGLANLINL-LDPEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALL 304 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHH
Confidence 56666666666655544432 4577888888 66643 666665554322 12222221 35667788877
Q ss_pred HHh
Q 007076 557 GAV 559 (619)
Q Consensus 557 A~~ 559 (619)
+..
T Consensus 305 ~~~ 307 (314)
T COG1940 305 ALL 307 (314)
T ss_pred HHH
Confidence 654
No 270
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=22.67 E-value=37 Score=36.13 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=33.3
Q ss_pred cCEEEEecCCcCCHHHHHHHHhhhCC--c------eee--cC-CCCccchHHHHHHHh
Q 007076 513 IDTLLACGGLAKNPLFLQQHADIIGC--P------IIL--PR-ENESVLLGAAILGAV 559 (619)
Q Consensus 513 ~~~I~~~GG~a~s~~~~Qi~Advlg~--p------V~~--~~-~~e~~alGAAllA~~ 559 (619)
.++|+++||.|+-+-+.+.+.+-++. | +.+ .. ...++-+|++++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 46799999999988888888887762 2 222 22 233556799998865
No 271
>PRK13329 pantothenate kinase; Reviewed
Probab=22.64 E-value=70 Score=32.17 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHH
Q 007076 490 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 558 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~ 558 (619)
.++.|++..+..+++.+++. +.+ -.|+++||.+ ++++..+..++.+ .++-...|-..++.
T Consensus 185 G~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda------~~l~~~l~~~~~~--~~~LvL~GL~~i~~ 245 (249)
T PRK13329 185 GGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAA------WKLAPSLTVPFEL--VDNLVLDGLLVIAA 245 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCH------HHHHhhcCCCCEE--CCCcHHHHHHHHHh
Confidence 67777777777777777653 322 3799999975 4667777777765 35566777776654
No 272
>PRK13329 pantothenate kinase; Reviewed
Probab=22.46 E-value=3.8e+02 Score=26.85 Aligned_cols=18 Identities=44% Similarity=0.866 Sum_probs=16.5
Q ss_pred EEEEEcCCcceEEEEEcC
Q 007076 57 FLGVDVGTGSARAGLFDE 74 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~ 74 (619)
.|-||+|-|.+|.+++|.
T Consensus 3 ~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred EEEEEcCcchheeeEecc
Confidence 688999999999999993
No 273
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=22.28 E-value=2.2e+02 Score=26.31 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=42.8
Q ss_pred EEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHH
Q 007076 515 TLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHD 594 (619)
Q Consensus 515 ~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~ 594 (619)
-|++--|.|||+. +|+|||+ ++-.+-+.+|..+++......-.| |+..-+..+
T Consensus 97 lIHC~aGISRStA---------------------~A~i~a~----ala~~~de~ela~~Lra~sp~atP--N~RliaI~d 149 (172)
T COG5350 97 LIHCYAGISRSTA---------------------AALIAAL----ALAPDMDETELAERLRALSPYATP--NPRLIAIAD 149 (172)
T ss_pred eeeeccccccchH---------------------HHHHHHH----hhccccChHHHHHHHHhcCcccCC--ChhHHHHHH
Confidence 4777788887654 3555544 444555667777777666555668 888777777
Q ss_pred HHHHHHHHHHHHHH
Q 007076 595 AKYLIFRELFEQQV 608 (619)
Q Consensus 595 ~~y~~y~~l~~~~~ 608 (619)
....+--+|.++.+
T Consensus 150 ~~l~r~Grlv~ai~ 163 (172)
T COG5350 150 AALGRKGRLVKAIK 163 (172)
T ss_pred HHHhhcchHHHHHH
Confidence 66555555555544
No 274
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=22.18 E-value=2e+02 Score=31.03 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC
Q 007076 486 LLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 547 (619)
Q Consensus 486 ~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e 547 (619)
.+++.+..|+...+.+.+..+++...+++-|+.+||.. .-+.|-..++|+.+....|
T Consensus 67 ~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~e 123 (396)
T TIGR03492 67 GLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAK 123 (396)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeec
Confidence 34668888888888888888887655788999999977 5677888899998844444
No 275
>PRK12397 propionate kinase; Reviewed
Probab=21.32 E-value=3.4e+02 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCcceEEEEEcC-CCCEEEEE
Q 007076 52 RSRSVFLGVDVGTGSARAGLFDE-SGKLLGSA 82 (619)
Q Consensus 52 m~~~~~lgIDiGTTsiKa~l~d~-~g~il~~~ 82 (619)
|+++ +|.|..|+||+|..|||. +.+++...
T Consensus 1 ~~~~-iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (404)
T PRK12397 1 MSYK-IMAINAGSSSLKFQLLEMPQGDMLCQG 31 (404)
T ss_pred CCCc-EEEEECChHhheEEEEECCCCceEEEE
Confidence 5555 899999999999999995 34555543
No 276
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=21.30 E-value=65 Score=33.65 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEEcCCcceEEEEE
Q 007076 58 LGVDVGTGSARAGLF 72 (619)
Q Consensus 58 lgIDiGTTsiKa~l~ 72 (619)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 899999999999875
No 277
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=21.19 E-value=57 Score=34.26 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=16.3
Q ss_pred EEEEEcCCcceEEEEEcCCCCEEEE
Q 007076 57 FLGVDVGTGSARAGLFDESGKLLGS 81 (619)
Q Consensus 57 ~lgIDiGTTsiKa~l~d~~g~il~~ 81 (619)
-+|||+||+++++.+- .+|.++.+
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~e 26 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNE 26 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEec
Confidence 5899999999987432 46655554
No 278
>PRK13327 pantothenate kinase; Reviewed
Probab=20.93 E-value=4.8e+02 Score=26.07 Aligned_cols=62 Identities=21% Similarity=0.137 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhc
Q 007076 490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 561 (619)
Q Consensus 490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~ 561 (619)
.++-+++..+..+++.+++ .+. .-+|+++||.+ +.+++.+.. ... .++-...|-+.+|..+.
T Consensus 178 G~~~~~~~~I~~~i~~~~~~~~~-~~~vilTGG~A------~~l~~~l~~-~~~--~p~LvL~GL~~~a~~~~ 240 (242)
T PRK13327 178 GCDGAAVALIERSLQHAHRSLGQ-PVRLLVHGGGA------PPLLPLLPD-AEF--RPALVLDGLATWATAAA 240 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCH------HHHHHhCCC-CEE--ccCcHHHHHHHHHHhcc
Confidence 5666666666666666654 332 34799999985 344455532 222 46677889888887653
No 279
>PTZ00288 glucokinase 1; Provisional
Probab=20.74 E-value=3.8e+02 Score=29.05 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCcCEEEEecCCc-CCHHHHH---------H-----H---Hhhh-CCceee-cCCCCccchHHHHHHHhh
Q 007076 511 HKIDTLLACGGLA-KNPLFLQ---------Q-----H---ADII-GCPIIL-PRENESVLLGAAILGAVA 560 (619)
Q Consensus 511 ~~~~~I~~~GG~a-~s~~~~Q---------i-----~---Advl-g~pV~~-~~~~e~~alGAAllA~~~ 560 (619)
..++.|++.||++ ++..+.+ - + .+.+ ..||++ ....+...+|||..|...
T Consensus 322 l~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~ 391 (405)
T PTZ00288 322 FLPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQL 391 (405)
T ss_pred HCCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHh
Confidence 3456688888764 5433322 1 1 3343 479987 778889999999988753
No 280
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=20.74 E-value=3e+02 Score=29.38 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=44.8
Q ss_pred eEEEEEcCCc--ceEEEEEcCCC---CEEEEEEeecccc------c--CCCccccCHH-------HHHHHHHHHHHHHHH
Q 007076 56 VFLGVDVGTG--SARAGLFDESG---KLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSACS 115 (619)
Q Consensus 56 ~~lgIDiGTT--siKa~l~d~~g---~il~~~~~~~~~~------~--~~g~~e~dp~-------~~~~~~~~~l~~~~~ 115 (619)
++||+=.||| ++-+++++-++ +++...+.||+.. . .+.. .+++ ++=+...++++++++
T Consensus 2 ~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~--~~~~~~~~l~~~lg~~~a~av~~~l~ 79 (364)
T PF03702_consen 2 LVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAA--SSLDELCELDRELGELFADAVNQFLK 79 (364)
T ss_dssp EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTC--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999998 58888888553 4566667777621 1 1211 1121 233446677888888
Q ss_pred HcCCCCCCEEEEEEcCc
Q 007076 116 LANVDGEEVKGVGFAAT 132 (619)
Q Consensus 116 ~~~~~~~~I~aIgis~~ 132 (619)
+.++++.+|..||.-+|
T Consensus 80 ~~~i~~~~I~~IgsHGQ 96 (364)
T PF03702_consen 80 KNGISPSDIDLIGSHGQ 96 (364)
T ss_dssp HCT--GGGEEEEEE--E
T ss_pred HcCCCcccccEEEeCCc
Confidence 88888899999998664
No 281
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.67 E-value=1.4e+02 Score=30.19 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=27.0
Q ss_pred cCEEEEecC--CcCCHHHHHHHHhhhCCceeec
Q 007076 513 IDTLLACGG--LAKNPLFLQQHADIIGCPIILP 543 (619)
Q Consensus 513 ~~~I~~~GG--~a~s~~~~Qi~Advlg~pV~~~ 543 (619)
.+-|+++|| .+..++-.|.+|..||+|++.-
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCcccC
Confidence 577999998 4799999999999999999663
No 282
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=20.54 E-value=1.1e+02 Score=34.24 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=45.7
Q ss_pred CcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHH
Q 007076 522 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR 601 (619)
Q Consensus 522 ~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~ 601 (619)
.+|-.+++|++-|++.-.+.++ ...++.|||-++.+ -+|-|...+- ...++. +-.|.|.++++... +.+++|+
T Consensus 102 ~tRYqfflQlKqDll~GRL~Cp-~~~AaeLaAl~lQs-ELGDYn~~~H-t~~yVS-efRf~p~Qte~LE~---~I~e~hK 174 (616)
T KOG3530|consen 102 NTRYQFFLQLKQDLLSGRLYCP-FETAAELAALILQS-ELGDYNEEEH-TGGYVS-EFRFLPNQTEELEE---RIFELHK 174 (616)
T ss_pred hhHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHH-HhcCCChhhc-ccccee-eeEecccccHHHHH---HHHHHHH
Confidence 4567789999999998777553 35677788877765 3677753322 122221 34578966555543 3445555
Q ss_pred HH
Q 007076 602 EL 603 (619)
Q Consensus 602 ~l 603 (619)
++
T Consensus 175 ~~ 176 (616)
T KOG3530|consen 175 EL 176 (616)
T ss_pred Hh
Confidence 44
No 283
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=20.38 E-value=35 Score=28.18 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.5
Q ss_pred ccccCCCcCCcCCcCCCCCC
Q 007076 8 AWADTTPLLDQKHRSSISPI 27 (619)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (619)
-|-||-.|||||.+||+...
T Consensus 43 ww~dt~siI~P~efssl~~~ 62 (88)
T PF11782_consen 43 WWCDTGSIIDPKEFSSLASK 62 (88)
T ss_pred HHHhcccccCchhhcchhhc
Confidence 38899999999999987766
No 284
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=20.08 E-value=1.2e+02 Score=31.52 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=27.2
Q ss_pred EEEEecCCc-CC-HHHHH------------HHHhhhCCceeecCCCCccchHHH
Q 007076 515 TLLACGGLA-KN-PLFLQ------------QHADIIGCPIILPRENESVLLGAA 554 (619)
Q Consensus 515 ~I~~~GG~a-~s-~~~~Q------------i~Advlg~pV~~~~~~e~~alGAA 554 (619)
-+++.||++ +. +.+.+ |..-+-+.||++...++.+.+|||
T Consensus 263 gv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 263 GVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred cEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccCCC
Confidence 688999986 22 33333 223335789999998888888875
Done!