Query 007077
Match_columns 619
No_of_seqs 756 out of 4131
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 18:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.6E-92 1.4E-96 766.2 70.0 598 2-607 103-771 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4.7E-80 1E-84 657.3 62.8 524 50-608 84-609 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-70 2.5E-75 599.5 55.3 587 2-604 68-708 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.5E-67 1.8E-71 556.9 54.4 508 18-562 368-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1E-64 2.2E-69 540.9 53.2 490 2-523 387-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.9E-61 6.2E-66 513.3 47.7 418 2-456 140-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-34 6.6E-39 321.3 58.7 539 4-557 314-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-34 1.2E-38 319.3 58.0 539 3-555 347-899 (899)
9 PRK11447 cellulose synthase su 100.0 6.9E-25 1.5E-29 245.7 56.7 413 130-554 276-738 (1157)
10 PRK11447 cellulose synthase su 100.0 5.1E-25 1.1E-29 246.8 54.3 537 3-556 46-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.4E-21 3.1E-26 209.1 54.9 513 22-557 44-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.5E-21 5.5E-26 207.2 55.8 539 3-559 62-743 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.1E-23 6.6E-28 196.8 32.3 450 56-552 51-515 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.1E-22 2E-26 186.9 30.9 421 127-558 52-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-19 2.3E-24 191.7 42.7 253 299-556 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 3.7E-19 8E-24 178.4 30.5 271 285-564 68-355 (389)
17 PRK15174 Vi polysaccharide exp 99.9 5.3E-18 1.1E-22 178.1 40.3 356 135-527 17-386 (656)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-17 2.7E-22 176.1 42.8 420 91-528 130-577 (615)
19 KOG2002 TPR-containing nuclear 99.9 2.6E-17 5.6E-22 165.3 42.2 522 25-557 167-746 (1018)
20 PRK10049 pgaA outer membrane p 99.9 2.2E-17 4.7E-22 177.3 43.8 410 87-528 14-462 (765)
21 PRK10049 pgaA outer membrane p 99.9 9.8E-18 2.1E-22 180.0 40.9 394 126-556 18-456 (765)
22 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.9E-23 173.4 30.6 221 227-450 110-346 (389)
23 KOG2002 TPR-containing nuclear 99.8 8E-17 1.7E-21 161.8 38.7 509 38-555 146-708 (1018)
24 PRK15174 Vi polysaccharide exp 99.8 3.5E-17 7.6E-22 171.9 37.8 356 165-557 16-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 1.4E-15 3.1E-20 160.0 45.2 425 97-528 43-519 (822)
26 PRK14574 hmsH outer membrane p 99.8 3.4E-15 7.4E-20 157.2 45.7 420 62-492 43-519 (822)
27 KOG4422 Uncharacterized conser 99.8 4.1E-14 9E-19 129.6 36.6 414 4-485 134-588 (625)
28 KOG0495 HAT repeat protein [RN 99.7 1.3E-12 2.9E-17 126.1 47.0 455 98-568 416-890 (913)
29 KOG2076 RNA polymerase III tra 99.7 7.1E-13 1.5E-17 133.0 43.7 528 3-538 157-785 (895)
30 KOG0495 HAT repeat protein [RN 99.7 1.7E-12 3.7E-17 125.4 43.0 482 37-537 391-895 (913)
31 KOG4422 Uncharacterized conser 99.7 5E-13 1.1E-17 122.6 37.1 446 52-558 115-592 (625)
32 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.5E-18 125.9 33.9 205 332-542 501-709 (840)
33 KOG1915 Cell cycle control pro 99.7 2.3E-12 5E-17 119.8 38.7 493 53-555 73-624 (677)
34 KOG2076 RNA polymerase III tra 99.7 2.6E-13 5.7E-18 136.0 32.8 332 202-566 151-522 (895)
35 KOG0547 Translocase of outer m 99.7 9E-13 2E-17 123.1 32.6 217 333-555 338-565 (606)
36 PF13429 TPR_15: Tetratricopep 99.6 8.7E-16 1.9E-20 145.5 10.3 258 291-554 13-275 (280)
37 KOG1126 DNA-binding cell divis 99.6 9.1E-14 2E-18 135.0 22.8 272 300-606 333-610 (638)
38 KOG1155 Anaphase-promoting com 99.6 1.6E-11 3.4E-16 114.3 32.9 364 220-607 160-527 (559)
39 KOG1126 DNA-binding cell divis 99.6 2.3E-13 5.1E-18 132.2 21.9 198 356-559 421-623 (638)
40 PRK10747 putative protoheme IX 99.6 2E-12 4.4E-17 128.2 29.2 277 268-555 97-389 (398)
41 PRK10747 putative protoheme IX 99.6 2.4E-12 5.2E-17 127.7 29.3 201 285-521 186-389 (398)
42 KOG4318 Bicoid mRNA stability 99.6 5.1E-12 1.1E-16 126.3 30.7 442 6-482 11-620 (1088)
43 KOG2003 TPR repeat-containing 99.6 2.7E-12 5.9E-17 118.7 26.1 257 294-555 427-688 (840)
44 KOG1173 Anaphase-promoting com 99.6 8.2E-11 1.8E-15 112.4 35.6 265 285-555 243-517 (611)
45 KOG1155 Anaphase-promoting com 99.5 5.5E-11 1.2E-15 110.7 32.3 356 119-485 160-534 (559)
46 KOG4318 Bicoid mRNA stability 99.5 1.3E-11 2.7E-16 123.6 29.1 269 74-369 11-284 (1088)
47 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.9E-16 123.1 29.6 255 293-554 125-397 (409)
48 TIGR00540 hemY_coli hemY prote 99.5 5.6E-11 1.2E-15 118.7 32.9 146 373-520 246-397 (409)
49 PF13429 TPR_15: Tetratricopep 99.5 4.6E-14 1E-18 133.7 9.0 260 58-348 13-275 (280)
50 KOG1915 Cell cycle control pro 99.5 1.1E-09 2.4E-14 102.4 36.7 142 135-280 85-232 (677)
51 KOG0547 Translocase of outer m 99.5 3.4E-10 7.3E-15 106.3 31.3 221 296-525 336-569 (606)
52 COG2956 Predicted N-acetylgluc 99.5 1.8E-10 3.8E-15 102.5 27.5 283 167-485 48-345 (389)
53 KOG1173 Anaphase-promoting com 99.5 2.5E-10 5.4E-15 109.2 29.4 435 15-465 44-529 (611)
54 KOG2047 mRNA splicing factor [ 99.4 3.1E-08 6.7E-13 96.4 43.4 504 20-544 102-711 (835)
55 COG2956 Predicted N-acetylgluc 99.4 2.5E-10 5.3E-15 101.6 26.4 286 269-562 49-353 (389)
56 KOG2047 mRNA splicing factor [ 99.4 2.4E-08 5.1E-13 97.2 41.4 490 54-555 103-686 (835)
57 TIGR02521 type_IV_pilW type IV 99.4 3.9E-11 8.4E-16 111.0 22.5 199 355-555 30-231 (234)
58 KOG1840 Kinesin light chain [C 99.4 5.4E-10 1.2E-14 110.3 29.0 233 323-555 201-478 (508)
59 KOG1174 Anaphase-promoting com 99.4 3.9E-08 8.5E-13 90.7 37.5 289 283-606 229-524 (564)
60 KOG3785 Uncharacterized conser 99.4 2.8E-09 6E-14 96.1 29.2 467 35-562 35-520 (557)
61 COG3071 HemY Uncharacterized e 99.4 2.3E-09 4.9E-14 98.7 27.7 277 268-554 97-388 (400)
62 COG3071 HemY Uncharacterized e 99.3 1.2E-09 2.7E-14 100.4 25.7 253 299-558 97-359 (400)
63 KOG4162 Predicted calmodulin-b 99.3 1.5E-08 3.2E-13 100.9 35.0 402 118-555 318-782 (799)
64 KOG1129 TPR repeat-containing 99.3 1.1E-10 2.4E-15 103.8 17.8 228 290-555 227-457 (478)
65 PF13041 PPR_2: PPR repeat fam 99.3 2.8E-12 6.1E-17 84.7 5.2 50 51-100 1-50 (50)
66 KOG1156 N-terminal acetyltrans 99.3 3.4E-08 7.3E-13 96.5 34.3 420 100-558 19-470 (700)
67 KOG2376 Signal recognition par 99.3 1.3E-07 2.9E-12 91.4 37.7 443 60-553 19-517 (652)
68 PRK12370 invasion protein regu 99.3 1.3E-09 2.8E-14 113.3 26.3 259 285-557 255-536 (553)
69 KOG1156 N-terminal acetyltrans 99.3 5.4E-08 1.2E-12 95.1 33.9 227 21-252 9-247 (700)
70 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.8E-14 99.8 23.7 202 286-523 31-233 (234)
71 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3.1E-16 81.3 6.6 50 284-333 1-50 (50)
72 KOG3785 Uncharacterized conser 99.3 1.5E-07 3.2E-12 85.2 33.6 445 60-561 29-495 (557)
73 PRK12370 invasion protein regu 99.3 7.9E-10 1.7E-14 114.8 22.5 213 335-555 275-501 (553)
74 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.9E-12 87.3 32.8 268 254-529 231-507 (564)
75 PRK11189 lipoprotein NlpI; Pro 99.2 2.4E-09 5.3E-14 101.6 21.2 188 359-556 67-265 (296)
76 KOG1129 TPR repeat-containing 99.2 9.9E-10 2.1E-14 97.8 16.9 193 360-557 227-425 (478)
77 COG3063 PilF Tfp pilus assembl 99.2 2.3E-09 5.1E-14 91.2 17.7 165 389-558 37-204 (250)
78 PF12569 NARP1: NMDA receptor- 99.2 3.1E-07 6.7E-12 92.3 35.2 431 96-552 12-516 (517)
79 PRK11189 lipoprotein NlpI; Pro 99.2 2.1E-08 4.5E-13 95.3 25.6 231 300-536 40-280 (296)
80 KOG3616 Selective LIM binding 99.2 2.3E-07 5E-12 91.8 32.5 159 324-515 768-930 (1636)
81 KOG1840 Kinesin light chain [C 99.2 2.8E-08 6E-13 98.4 26.1 97 424-520 369-477 (508)
82 KOG4162 Predicted calmodulin-b 99.2 2.6E-07 5.6E-12 92.3 32.3 436 16-528 319-789 (799)
83 KOG0624 dsRNA-activated protei 99.1 1.4E-07 3.1E-12 85.0 27.0 301 228-555 42-369 (504)
84 KOG4340 Uncharacterized conser 99.1 2.1E-07 4.6E-12 82.3 26.8 385 125-555 12-442 (459)
85 KOG2376 Signal recognition par 99.1 1.6E-06 3.5E-11 84.2 34.2 50 433-485 469-518 (652)
86 KOG3617 WD40 and TPR repeat-co 99.1 5.8E-06 1.3E-10 83.2 38.8 239 18-278 724-990 (1416)
87 KOG0548 Molecular co-chaperone 99.1 3E-07 6.6E-12 88.2 28.9 217 325-556 228-455 (539)
88 KOG3616 Selective LIM binding 99.1 1.9E-06 4.2E-11 85.4 34.3 368 132-551 715-1129(1636)
89 PF12569 NARP1: NMDA receptor- 99.1 1E-07 2.2E-12 95.7 26.1 149 406-558 130-293 (517)
90 KOG0985 Vesicle coat protein c 99.1 3.3E-05 7.1E-10 79.8 43.2 504 23-562 609-1255(1666)
91 KOG1127 TPR repeat-containing 99.0 1.1E-06 2.4E-11 90.2 31.1 539 6-555 477-1103(1238)
92 KOG3617 WD40 and TPR repeat-co 99.0 7.9E-07 1.7E-11 89.2 28.9 237 121-383 724-994 (1416)
93 PF04733 Coatomer_E: Coatomer 99.0 4.9E-08 1.1E-12 91.2 19.4 229 288-528 37-271 (290)
94 COG3063 PilF Tfp pilus assembl 99.0 3E-07 6.4E-12 78.7 21.7 27 389-415 105-131 (250)
95 KOG0548 Molecular co-chaperone 98.9 6.5E-06 1.4E-10 79.3 30.9 437 61-540 10-473 (539)
96 KOG1127 TPR repeat-containing 98.9 3.5E-06 7.7E-11 86.6 29.3 441 104-554 474-994 (1238)
97 PF04733 Coatomer_E: Coatomer 98.9 9.7E-08 2.1E-12 89.2 16.7 246 295-556 10-265 (290)
98 KOG1125 TPR repeat-containing 98.9 9.3E-08 2E-12 92.4 16.3 253 332-604 296-559 (579)
99 cd05804 StaR_like StaR_like; a 98.8 5E-06 1.1E-10 82.3 28.1 59 498-556 269-336 (355)
100 KOG0624 dsRNA-activated protei 98.8 8.4E-06 1.8E-10 73.9 25.8 316 191-530 39-378 (504)
101 TIGR03302 OM_YfiO outer membra 98.8 7.6E-07 1.6E-11 82.1 19.5 179 355-556 32-232 (235)
102 KOG1914 mRNA cleavage and poly 98.8 0.00014 3E-09 70.4 34.2 426 17-473 17-525 (656)
103 KOG0985 Vesicle coat protein c 98.8 0.00038 8.2E-09 72.4 40.6 439 55-538 840-1324(1666)
104 PRK04841 transcriptional regul 98.8 3.1E-05 6.6E-10 87.1 35.2 324 233-556 383-760 (903)
105 PRK10370 formate-dependent nit 98.8 5.9E-07 1.3E-11 79.3 17.0 149 394-557 23-174 (198)
106 cd05804 StaR_like StaR_like; a 98.8 2.1E-05 4.6E-10 77.8 30.2 268 286-556 6-293 (355)
107 KOG4340 Uncharacterized conser 98.8 3.4E-06 7.3E-11 74.8 21.0 281 262-552 17-335 (459)
108 KOG1070 rRNA processing protei 98.7 1.2E-06 2.7E-11 93.0 20.8 203 353-559 1455-1666(1710)
109 PRK04841 transcriptional regul 98.7 5.6E-05 1.2E-09 84.9 35.1 404 105-527 292-765 (903)
110 PRK15359 type III secretion sy 98.7 6.7E-07 1.4E-11 74.6 14.6 94 461-555 27-120 (144)
111 PRK15359 type III secretion sy 98.7 5.3E-07 1.1E-11 75.2 13.7 125 407-538 13-137 (144)
112 PF12854 PPR_1: PPR repeat 98.6 3.7E-08 8E-13 58.1 3.5 33 118-150 2-34 (34)
113 TIGR03302 OM_YfiO outer membra 98.6 3.1E-06 6.7E-11 78.0 18.1 184 319-524 31-234 (235)
114 KOG1128 Uncharacterized conser 98.6 2E-06 4.4E-11 85.7 17.1 197 351-555 393-615 (777)
115 COG5010 TadD Flp pilus assembl 98.6 3.9E-06 8.5E-11 73.6 16.6 128 426-556 70-197 (257)
116 PLN02789 farnesyltranstransfer 98.6 2E-05 4.3E-10 74.9 22.7 184 365-553 80-299 (320)
117 KOG1128 Uncharacterized conser 98.6 3.6E-06 7.8E-11 83.9 17.9 215 289-523 401-617 (777)
118 KOG1125 TPR repeat-containing 98.6 5.5E-06 1.2E-10 80.5 18.1 249 295-549 294-564 (579)
119 PRK15179 Vi polysaccharide bio 98.6 7.3E-06 1.6E-10 85.8 20.6 141 386-532 85-227 (694)
120 KOG1070 rRNA processing protei 98.6 1.7E-05 3.7E-10 84.7 22.8 227 213-440 1447-1689(1710)
121 PRK15363 pathogenicity island 98.5 6.4E-06 1.4E-10 67.3 14.8 122 457-602 34-155 (157)
122 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.7E-12 54.8 4.4 33 453-485 2-34 (34)
123 PRK10370 formate-dependent nit 98.5 2.1E-05 4.5E-10 69.5 18.4 156 363-530 23-181 (198)
124 PRK15179 Vi polysaccharide bio 98.5 2.7E-05 5.8E-10 81.7 22.2 145 351-500 81-229 (694)
125 COG4783 Putative Zn-dependent 98.4 4E-05 8.6E-10 73.4 20.2 149 386-557 305-455 (484)
126 TIGR02552 LcrH_SycD type III s 98.4 4.3E-06 9.3E-11 69.4 11.5 98 458-556 17-114 (135)
127 COG5010 TadD Flp pilus assembl 98.4 4.9E-05 1.1E-09 66.9 17.8 155 391-551 70-226 (257)
128 PRK14720 transcript cleavage f 98.4 0.00022 4.7E-09 75.9 25.7 151 322-504 117-268 (906)
129 PLN02789 farnesyltranstransfer 98.4 0.00043 9.4E-09 65.9 25.6 233 289-528 40-308 (320)
130 KOG3081 Vesicle coat complex C 98.4 0.0005 1.1E-08 60.7 23.4 177 344-528 96-277 (299)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.1E-05 2.3E-10 78.1 14.7 125 424-554 171-295 (395)
132 KOG2053 Mitochondrial inherita 98.3 0.0062 1.3E-07 63.1 35.8 492 34-554 21-606 (932)
133 PRK14720 transcript cleavage f 98.3 0.00011 2.4E-09 78.0 21.7 232 283-538 28-268 (906)
134 KOG2053 Mitochondrial inherita 98.3 0.0072 1.6E-07 62.7 36.4 222 64-316 20-256 (932)
135 KOG3060 Uncharacterized conser 98.3 0.00022 4.8E-09 62.3 19.5 170 358-531 54-229 (289)
136 COG4783 Putative Zn-dependent 98.3 0.00011 2.3E-09 70.6 19.2 124 429-555 313-436 (484)
137 TIGR02552 LcrH_SycD type III s 98.3 2.2E-05 4.8E-10 65.1 13.2 117 408-529 4-121 (135)
138 KOG3060 Uncharacterized conser 98.3 7.8E-05 1.7E-09 65.1 16.3 186 368-558 24-222 (289)
139 KOG1914 mRNA cleavage and poly 98.3 0.0058 1.3E-07 59.7 36.3 213 338-553 310-536 (656)
140 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.1E-11 51.4 4.6 35 54-88 1-35 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.7E-05 1.2E-09 73.2 15.7 125 357-486 170-296 (395)
142 PF09976 TPR_21: Tetratricopep 98.2 6.6E-05 1.4E-09 62.9 14.0 117 435-552 24-143 (145)
143 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.7E-11 50.2 4.2 34 53-86 1-34 (34)
144 KOG0550 Molecular chaperone (D 98.1 0.00027 5.9E-09 66.2 17.5 157 395-556 177-350 (486)
145 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 49.8 4.5 34 287-320 1-34 (35)
146 PF09976 TPR_21: Tetratricopep 98.1 0.0002 4.3E-09 60.0 15.2 124 390-519 15-144 (145)
147 PLN03088 SGT1, suppressor of 98.0 8.1E-05 1.8E-09 72.6 13.5 100 431-533 11-110 (356)
148 cd00189 TPR Tetratricopeptide 98.0 4.7E-05 1E-09 58.4 9.8 94 461-555 3-96 (100)
149 KOG3081 Vesicle coat complex C 98.0 0.0027 5.8E-08 56.3 20.9 216 261-485 47-269 (299)
150 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.3E-05 1.8E-09 60.0 11.5 96 461-556 5-105 (119)
151 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 48.0 4.4 33 287-319 2-34 (34)
152 KOG0553 TPR repeat-containing 98.0 5.2E-05 1.1E-09 68.1 10.0 100 431-534 90-190 (304)
153 PF12895 Apc3: Anaphase-promot 98.0 5.6E-06 1.2E-10 61.8 3.4 80 472-552 3-83 (84)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00032 7E-09 56.5 12.5 108 424-531 4-114 (119)
155 PF13414 TPR_11: TPR repeat; P 97.9 4.4E-05 9.5E-10 54.5 6.1 63 493-555 3-66 (69)
156 PF13432 TPR_16: Tetratricopep 97.9 4.9E-05 1.1E-09 53.4 6.3 58 499-556 3-60 (65)
157 PRK15331 chaperone protein Sic 97.8 0.00056 1.2E-08 56.4 12.8 93 462-555 41-133 (165)
158 KOG0553 TPR repeat-containing 97.8 0.00018 3.8E-09 64.8 10.6 87 394-485 88-176 (304)
159 PF14938 SNAP: Soluble NSF att 97.8 0.0029 6.4E-08 59.7 19.7 25 289-313 38-62 (282)
160 PF14559 TPR_19: Tetratricopep 97.8 5.1E-05 1.1E-09 54.0 5.9 52 504-555 2-53 (68)
161 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.2E-10 45.0 3.6 31 54-84 1-31 (31)
162 PLN03088 SGT1, suppressor of 97.8 0.00037 8E-09 68.0 12.9 90 392-485 7-97 (356)
163 CHL00033 ycf3 photosystem I as 97.8 0.00028 6E-09 60.9 10.8 97 458-554 35-140 (168)
164 PF12895 Apc3: Anaphase-promot 97.7 0.00012 2.7E-09 54.5 6.9 47 401-447 3-50 (84)
165 PRK02603 photosystem I assembl 97.7 0.0004 8.6E-09 60.2 11.0 85 458-542 35-121 (172)
166 PF13432 TPR_16: Tetratricopep 97.7 9.6E-05 2.1E-09 51.9 5.8 63 464-527 3-65 (65)
167 PF05843 Suf: Suppressor of fo 97.7 0.00096 2.1E-08 62.7 14.1 138 388-528 2-142 (280)
168 PRK02603 photosystem I assembl 97.7 0.0011 2.5E-08 57.3 13.6 131 386-542 34-166 (172)
169 PRK10153 DNA-binding transcrip 97.7 0.0018 3.9E-08 66.1 16.8 36 385-422 335-375 (517)
170 cd00189 TPR Tetratricopeptide 97.7 0.00047 1E-08 52.7 10.1 64 460-524 36-99 (100)
171 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 43.9 3.4 31 287-317 1-31 (31)
172 COG4235 Cytochrome c biogenesi 97.7 0.00053 1.1E-08 62.2 11.0 106 455-561 153-261 (287)
173 PF14938 SNAP: Soluble NSF att 97.6 0.014 3.1E-07 55.1 21.0 19 261-279 41-59 (282)
174 COG4700 Uncharacterized protei 97.6 0.011 2.4E-07 49.4 16.6 135 419-555 86-221 (251)
175 PF04840 Vps16_C: Vps16, C-ter 97.6 0.072 1.6E-06 50.8 26.5 112 424-555 179-290 (319)
176 COG3898 Uncharacterized membra 97.6 0.067 1.5E-06 50.4 27.2 193 54-252 83-291 (531)
177 COG3898 Uncharacterized membra 97.6 0.073 1.6E-06 50.1 28.3 286 204-499 98-401 (531)
178 PF13371 TPR_9: Tetratricopept 97.6 0.00029 6.3E-09 50.9 6.6 58 501-558 3-60 (73)
179 CHL00033 ycf3 photosystem I as 97.5 0.002 4.2E-08 55.7 12.5 114 426-543 39-167 (168)
180 KOG1258 mRNA processing protei 97.5 0.12 2.7E-06 51.7 30.8 185 355-542 296-490 (577)
181 PF12688 TPR_5: Tetratrico pep 97.5 0.0014 3.1E-08 51.9 10.4 92 463-554 6-102 (120)
182 KOG2041 WD40 repeat protein [G 97.5 0.14 3.1E-06 51.9 26.5 246 38-314 679-951 (1189)
183 PRK10153 DNA-binding transcrip 97.5 0.0053 1.2E-07 62.7 16.5 138 417-558 332-484 (517)
184 PF14559 TPR_19: Tetratricopep 97.4 0.00012 2.6E-09 52.0 3.3 50 434-485 3-52 (68)
185 COG4700 Uncharacterized protei 97.4 0.031 6.7E-07 46.8 17.3 120 354-478 87-213 (251)
186 KOG1130 Predicted G-alpha GTPa 97.4 0.0014 2.9E-08 61.5 10.5 260 295-554 26-342 (639)
187 PRK15363 pathogenicity island 97.4 0.01 2.2E-07 48.9 14.2 94 387-484 35-129 (157)
188 PF10037 MRP-S27: Mitochondria 97.4 0.0026 5.5E-08 62.3 12.5 61 390-450 106-166 (429)
189 KOG1538 Uncharacterized conser 97.4 0.036 7.7E-07 55.5 19.9 281 52-416 555-846 (1081)
190 PF13414 TPR_11: TPR repeat; P 97.4 0.00033 7.1E-09 49.9 4.8 66 458-524 3-69 (69)
191 KOG2796 Uncharacterized conser 97.4 0.014 3.1E-07 51.6 15.2 138 287-426 178-323 (366)
192 KOG2280 Vacuolar assembly/sort 97.3 0.27 5.8E-06 50.6 30.2 336 184-554 426-797 (829)
193 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.18 4E-06 48.5 30.9 141 385-528 395-537 (660)
194 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.18 4E-06 48.5 26.7 83 16-102 38-123 (660)
195 PF13431 TPR_17: Tetratricopep 97.3 0.00017 3.7E-09 42.4 2.1 33 516-548 2-34 (34)
196 PF08579 RPM2: Mitochondrial r 97.3 0.0048 1E-07 47.0 10.0 80 390-470 28-116 (120)
197 PF10037 MRP-S27: Mitochondria 97.3 0.0028 6.1E-08 62.0 11.4 120 15-136 61-186 (429)
198 KOG1538 Uncharacterized conser 97.3 0.09 2E-06 52.8 21.3 92 363-486 710-801 (1081)
199 PF08579 RPM2: Mitochondrial r 97.2 0.0054 1.2E-07 46.7 10.0 81 288-368 27-116 (120)
200 PF12688 TPR_5: Tetratrico pep 97.2 0.015 3.2E-07 46.2 12.9 103 291-394 6-113 (120)
201 KOG2796 Uncharacterized conser 97.2 0.034 7.5E-07 49.3 15.8 142 388-530 178-323 (366)
202 PF05843 Suf: Suppressor of fo 97.2 0.0084 1.8E-07 56.4 13.3 125 323-450 3-135 (280)
203 PRK10803 tol-pal system protei 97.2 0.01 2.3E-07 54.7 13.2 102 424-528 145-252 (263)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0025 5.3E-08 61.8 9.1 68 489-556 71-141 (453)
205 PRK10803 tol-pal system protei 97.1 0.0058 1.2E-07 56.4 11.2 98 459-556 144-246 (263)
206 PRK10866 outer membrane biogen 97.1 0.033 7.2E-07 51.0 15.9 174 359-554 35-239 (243)
207 KOG2041 WD40 repeat protein [G 97.1 0.31 6.6E-06 49.7 22.7 198 121-345 690-902 (1189)
208 PF13428 TPR_14: Tetratricopep 97.0 0.0011 2.5E-08 41.8 4.1 41 495-535 3-43 (44)
209 PF13281 DUF4071: Domain of un 97.0 0.12 2.5E-06 49.9 19.0 163 361-526 146-338 (374)
210 COG4235 Cytochrome c biogenesi 97.0 0.032 6.9E-07 51.0 14.3 122 407-534 142-267 (287)
211 PF13371 TPR_9: Tetratricopept 97.0 0.0025 5.5E-08 45.8 6.1 65 466-531 3-67 (73)
212 KOG1130 Predicted G-alpha GTPa 96.9 0.0045 9.7E-08 58.2 8.6 128 323-450 197-343 (639)
213 KOG2280 Vacuolar assembly/sort 96.9 0.62 1.3E-05 48.1 26.4 111 357-483 685-795 (829)
214 KOG0543 FKBP-type peptidyl-pro 96.9 0.0074 1.6E-07 57.2 10.1 84 495-604 259-342 (397)
215 PRK10866 outer membrane biogen 96.9 0.36 7.7E-06 44.3 21.5 60 291-350 37-98 (243)
216 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.3E-07 50.3 10.3 96 377-473 35-153 (228)
217 KOG0550 Molecular chaperone (D 96.8 0.17 3.8E-06 48.2 17.9 86 397-485 259-348 (486)
218 PF03704 BTAD: Bacterial trans 96.8 0.0046 1E-07 51.9 7.2 67 496-562 65-136 (146)
219 PF13424 TPR_12: Tetratricopep 96.8 0.0023 5.1E-08 46.8 4.8 63 493-555 5-74 (78)
220 PF06239 ECSIT: Evolutionarily 96.8 0.013 2.8E-07 50.8 9.6 96 276-371 35-153 (228)
221 PF04840 Vps16_C: Vps16, C-ter 96.7 0.59 1.3E-05 44.7 31.1 107 257-379 179-285 (319)
222 PF07079 DUF1347: Protein of u 96.7 0.68 1.5E-05 44.9 34.2 59 495-554 462-522 (549)
223 PF13525 YfiO: Outer membrane 96.7 0.08 1.7E-06 47.2 14.4 49 499-547 147-198 (203)
224 PF07079 DUF1347: Protein of u 96.7 0.72 1.6E-05 44.8 33.4 119 366-487 389-524 (549)
225 COG4105 ComL DNA uptake lipopr 96.6 0.52 1.1E-05 42.3 18.4 169 365-554 43-231 (254)
226 KOG0543 FKBP-type peptidyl-pro 96.5 0.036 7.9E-07 52.7 11.4 140 393-555 214-354 (397)
227 PF13424 TPR_12: Tetratricopep 96.5 0.0048 1E-07 45.1 4.4 62 460-521 7-74 (78)
228 PF13525 YfiO: Outer membrane 96.4 0.64 1.4E-05 41.4 19.3 60 291-350 10-71 (203)
229 PRK11906 transcriptional regul 96.3 0.079 1.7E-06 51.8 12.5 78 475-553 321-398 (458)
230 PF12921 ATP13: Mitochondrial 96.2 0.077 1.7E-06 42.6 10.2 52 417-468 47-98 (126)
231 PRK15331 chaperone protein Sic 96.1 0.29 6.3E-06 40.8 13.4 93 428-526 43-137 (165)
232 PF04053 Coatomer_WDAD: Coatom 96.0 0.64 1.4E-05 46.7 18.0 130 227-381 298-427 (443)
233 KOG2610 Uncharacterized conser 96.0 0.096 2.1E-06 48.3 10.9 159 398-560 114-280 (491)
234 COG0457 NrfG FOG: TPR repeat [ 95.9 1.3 2.8E-05 40.3 27.4 196 356-555 59-264 (291)
235 KOG1258 mRNA processing protei 95.9 2.3 5E-05 43.1 25.2 134 153-289 44-185 (577)
236 PF13512 TPR_18: Tetratricopep 95.8 0.29 6.2E-06 39.8 11.7 63 466-528 18-82 (142)
237 KOG2610 Uncharacterized conser 95.7 0.35 7.7E-06 44.8 13.3 185 366-553 113-312 (491)
238 KOG1941 Acetylcholine receptor 95.7 0.099 2.1E-06 48.8 9.9 166 388-553 84-272 (518)
239 PF03704 BTAD: Bacterial trans 95.7 0.26 5.7E-06 41.2 12.2 71 389-461 64-139 (146)
240 COG3118 Thioredoxin domain-con 95.7 0.59 1.3E-05 42.9 14.6 122 431-555 143-264 (304)
241 PF10300 DUF3808: Protein of u 95.5 0.92 2E-05 46.3 17.3 118 435-555 246-375 (468)
242 KOG4234 TPR repeat-containing 95.5 0.095 2.1E-06 44.6 8.1 140 466-617 103-247 (271)
243 PF13281 DUF4071: Domain of un 95.5 1.1 2.5E-05 43.3 16.5 68 264-331 150-227 (374)
244 COG1729 Uncharacterized protei 95.4 0.13 2.8E-06 46.5 9.4 104 424-528 144-250 (262)
245 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.11 2.3E-06 50.8 9.5 62 422-486 75-140 (453)
246 COG1729 Uncharacterized protei 95.4 0.16 3.5E-06 45.9 10.0 93 390-485 145-242 (262)
247 COG0457 NrfG FOG: TPR repeat [ 95.4 2.1 4.5E-05 38.8 25.8 221 300-525 37-268 (291)
248 KOG4555 TPR repeat-containing 95.3 0.15 3.2E-06 40.1 8.2 92 466-558 51-146 (175)
249 PF10300 DUF3808: Protein of u 95.2 0.53 1.2E-05 48.0 14.4 118 400-520 246-374 (468)
250 KOG2114 Vacuolar assembly/sort 95.2 5.1 0.00011 42.4 23.5 80 64-150 379-458 (933)
251 PRK11906 transcriptional regul 95.2 1.4 3E-05 43.5 16.1 146 403-552 274-432 (458)
252 PF04053 Coatomer_WDAD: Coatom 95.0 1.5 3.2E-05 44.1 16.5 129 367-523 272-403 (443)
253 KOG3941 Intermediate in Toll s 95.0 0.15 3.2E-06 46.0 8.3 112 39-150 51-186 (406)
254 PF00515 TPR_1: Tetratricopept 95.0 0.048 1E-06 31.9 3.8 31 495-525 3-33 (34)
255 PF07719 TPR_2: Tetratricopept 95.0 0.069 1.5E-06 31.2 4.5 32 495-526 3-34 (34)
256 PF13512 TPR_18: Tetratricopep 94.7 1.1 2.4E-05 36.5 12.0 116 392-528 15-134 (142)
257 PF12921 ATP13: Mitochondrial 94.7 0.36 7.7E-06 38.8 9.2 51 184-234 46-98 (126)
258 PF04184 ST7: ST7 protein; In 94.7 3.2 7E-05 41.2 17.0 105 424-528 261-381 (539)
259 PF09205 DUF1955: Domain of un 94.7 1.8 3.9E-05 34.4 13.9 141 397-559 12-152 (161)
260 KOG1920 IkappaB kinase complex 94.6 6.9 0.00015 43.3 20.7 191 296-520 861-1053(1265)
261 PF08631 SPO22: Meiosis protei 94.6 4.1 8.8E-05 38.4 23.3 18 502-519 255-272 (278)
262 smart00299 CLH Clathrin heavy 94.5 2.3 5.1E-05 35.0 15.6 85 391-484 11-95 (140)
263 KOG1585 Protein required for f 94.4 3.5 7.6E-05 36.8 16.9 26 288-313 33-58 (308)
264 PF09205 DUF1955: Domain of un 94.3 2.1 4.6E-05 34.0 14.4 134 297-451 13-149 (161)
265 PF02259 FAT: FAT domain; Int 94.2 6.1 0.00013 38.8 20.0 148 386-540 145-305 (352)
266 KOG1586 Protein required for f 94.1 2.4 5.3E-05 37.4 13.4 93 464-556 119-224 (288)
267 PF04184 ST7: ST7 protein; In 94.1 1.3 2.8E-05 43.9 12.9 59 497-555 263-323 (539)
268 KOG3941 Intermediate in Toll s 94.0 0.54 1.2E-05 42.5 9.5 97 276-372 55-174 (406)
269 PF04097 Nic96: Nup93/Nic96; 93.8 11 0.00023 40.3 20.6 50 153-204 110-159 (613)
270 KOG4555 TPR repeat-containing 93.8 0.21 4.6E-06 39.2 5.8 56 501-556 51-106 (175)
271 COG4649 Uncharacterized protei 93.6 3.9 8.4E-05 34.4 16.3 124 397-521 68-195 (221)
272 smart00299 CLH Clathrin heavy 93.6 3.6 7.7E-05 34.0 14.6 44 56-100 10-53 (140)
273 PF10345 Cohesin_load: Cohesin 93.4 13 0.00027 39.8 29.5 198 16-218 26-253 (608)
274 PF13176 TPR_7: Tetratricopept 93.4 0.17 3.8E-06 30.0 3.9 26 529-554 1-26 (36)
275 PF02259 FAT: FAT domain; Int 93.2 7.1 0.00015 38.3 17.5 67 490-556 143-213 (352)
276 COG4785 NlpI Lipoprotein NlpI, 93.1 4.8 0.0001 35.2 13.2 178 370-558 79-268 (297)
277 PF13181 TPR_8: Tetratricopept 93.0 0.2 4.3E-06 29.2 3.7 31 495-525 3-33 (34)
278 PF09613 HrpB1_HrpK: Bacterial 92.7 4.1 8.8E-05 34.0 12.1 111 431-548 19-130 (160)
279 COG3629 DnrI DNA-binding trans 92.6 0.63 1.4E-05 42.9 8.1 59 496-554 156-214 (280)
280 COG4649 Uncharacterized protei 92.6 2.5 5.5E-05 35.4 10.6 119 367-486 69-195 (221)
281 PF13428 TPR_14: Tetratricopep 92.6 0.41 8.8E-06 30.0 5.0 32 389-422 3-34 (44)
282 PRK11619 lytic murein transgly 92.4 18 0.00038 38.7 32.2 117 400-520 254-373 (644)
283 KOG0890 Protein kinase of the 92.4 32 0.00069 41.6 30.3 312 228-557 1387-1732(2382)
284 COG1747 Uncharacterized N-term 92.3 13 0.00029 37.1 19.7 158 286-450 66-233 (711)
285 COG4105 ComL DNA uptake lipopr 92.2 8.7 0.00019 34.8 21.0 80 389-469 36-117 (254)
286 PF10602 RPN7: 26S proteasome 91.9 4 8.7E-05 35.2 11.8 95 389-485 38-140 (177)
287 PF13176 TPR_7: Tetratricopept 91.9 0.3 6.5E-06 29.0 3.5 26 496-521 2-27 (36)
288 KOG1464 COP9 signalosome, subu 91.7 10 0.00022 34.4 16.7 236 288-530 67-340 (440)
289 KOG4648 Uncharacterized conser 91.6 0.77 1.7E-05 42.7 7.3 96 429-528 104-200 (536)
290 PF09613 HrpB1_HrpK: Bacterial 91.2 1.5 3.3E-05 36.4 8.1 81 460-542 9-93 (160)
291 KOG4648 Uncharacterized conser 91.0 0.8 1.7E-05 42.6 6.7 78 394-482 104-182 (536)
292 TIGR02561 HrpB1_HrpK type III 91.0 1.6 3.4E-05 35.7 7.7 71 470-542 22-93 (153)
293 KOG4234 TPR repeat-containing 90.9 4.3 9.4E-05 35.0 10.5 101 433-536 106-211 (271)
294 PRK09687 putative lyase; Provi 90.8 14 0.00031 34.7 24.3 62 456-524 204-265 (280)
295 KOG4570 Uncharacterized conser 90.8 2.5 5.4E-05 39.1 9.6 101 350-451 58-164 (418)
296 KOG1586 Protein required for f 90.8 11 0.00025 33.5 15.5 61 468-528 164-230 (288)
297 PF07035 Mic1: Colon cancer-as 90.8 7.2 0.00016 33.0 11.8 133 73-216 14-146 (167)
298 KOG1585 Protein required for f 90.7 12 0.00026 33.5 18.4 16 503-518 200-215 (308)
299 TIGR02561 HrpB1_HrpK type III 90.7 2.8 6.2E-05 34.3 8.8 108 421-554 6-120 (153)
300 COG3629 DnrI DNA-binding trans 90.6 2.2 4.8E-05 39.4 9.3 76 356-431 153-236 (280)
301 PF13431 TPR_17: Tetratricopep 90.5 0.35 7.6E-06 28.3 2.8 32 213-244 2-33 (34)
302 COG4785 NlpI Lipoprotein NlpI, 90.4 3.1 6.7E-05 36.4 9.3 109 435-550 78-189 (297)
303 PF13170 DUF4003: Protein of u 90.4 7.8 0.00017 36.7 13.1 64 404-468 160-227 (297)
304 COG3118 Thioredoxin domain-con 90.4 15 0.00032 34.1 18.1 53 331-384 144-196 (304)
305 PF10602 RPN7: 26S proteasome 89.9 4.4 9.5E-05 35.0 10.3 63 287-349 37-101 (177)
306 COG3947 Response regulator con 89.9 14 0.0003 34.1 13.3 60 496-555 282-341 (361)
307 PF07035 Mic1: Colon cancer-as 89.7 12 0.00025 31.8 15.2 133 407-555 14-148 (167)
308 COG2976 Uncharacterized protei 89.7 8.8 0.00019 33.1 11.4 25 532-556 164-188 (207)
309 PF07721 TPR_4: Tetratricopept 89.5 0.55 1.2E-05 25.4 2.9 23 529-551 3-25 (26)
310 PF00515 TPR_1: Tetratricopept 88.6 1 2.2E-05 26.1 3.9 28 389-416 3-30 (34)
311 KOG0276 Vesicle coat complex C 88.2 6.3 0.00014 40.1 11.0 151 367-553 597-747 (794)
312 PRK11619 lytic murein transgly 88.1 41 0.00089 36.0 35.4 398 35-460 79-513 (644)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 4.1 8.9E-05 30.4 7.2 63 402-466 22-84 (103)
314 PRK09687 putative lyase; Provi 87.3 26 0.00057 33.0 25.0 19 222-240 140-158 (280)
315 TIGR02508 type_III_yscG type I 87.3 11 0.00023 28.5 9.3 62 363-427 46-107 (115)
316 PRK10941 hypothetical protein; 87.3 6.4 0.00014 36.5 10.0 64 494-557 182-245 (269)
317 TIGR02508 type_III_yscG type I 87.2 11 0.00023 28.4 9.7 81 228-324 25-105 (115)
318 PF00637 Clathrin: Region in C 87.1 0.62 1.4E-05 38.7 3.2 16 189-204 124-139 (143)
319 PF07719 TPR_2: Tetratricopept 87.0 1.5 3.2E-05 25.3 3.9 28 389-416 3-30 (34)
320 PF10345 Cohesin_load: Cohesin 87.0 47 0.001 35.6 30.3 192 50-251 27-252 (608)
321 PF14853 Fis1_TPR_C: Fis1 C-te 86.8 4.8 0.00011 26.4 6.5 49 530-604 4-52 (53)
322 PF13174 TPR_6: Tetratricopept 86.6 1.4 3E-05 25.1 3.7 23 532-554 5-27 (33)
323 PF02284 COX5A: Cytochrome c o 86.6 4.5 9.8E-05 30.5 6.8 62 404-467 27-88 (108)
324 PF13374 TPR_10: Tetratricopep 86.5 1.4 3.1E-05 26.8 3.9 27 529-555 4-30 (42)
325 KOG1920 IkappaB kinase complex 86.3 63 0.0014 36.3 26.6 25 530-554 1187-1211(1265)
326 PF00637 Clathrin: Region in C 86.3 0.85 1.8E-05 37.9 3.6 86 93-181 12-97 (143)
327 KOG2066 Vacuolar assembly/sort 86.2 51 0.0011 35.2 24.3 51 124-174 393-443 (846)
328 PF13181 TPR_8: Tetratricopept 86.0 1.9 4E-05 24.9 4.0 27 529-555 3-29 (34)
329 KOG2114 Vacuolar assembly/sort 85.8 55 0.0012 35.2 27.5 97 212-312 419-516 (933)
330 KOG1550 Extracellular protein 85.2 40 0.00087 35.5 15.9 15 337-351 228-242 (552)
331 smart00028 TPR Tetratricopepti 85.0 2 4.3E-05 23.8 3.9 29 496-524 4-32 (34)
332 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 3.5 7.5E-05 27.1 5.1 32 498-529 6-37 (53)
333 PF11207 DUF2989: Protein of u 84.8 6.8 0.00015 34.1 8.2 77 469-547 118-198 (203)
334 COG2976 Uncharacterized protei 84.7 26 0.00055 30.4 13.6 118 405-527 70-193 (207)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 84.7 6.9 0.00015 29.3 6.9 61 170-231 23-83 (103)
336 KOG2062 26S proteasome regulat 84.4 60 0.0013 34.4 27.3 87 396-485 510-598 (929)
337 KOG1941 Acetylcholine receptor 84.0 41 0.00089 32.2 21.2 162 288-449 85-273 (518)
338 KOG0551 Hsp90 co-chaperone CNS 84.0 6.5 0.00014 36.9 8.1 94 461-554 84-180 (390)
339 KOG4570 Uncharacterized conser 83.8 8.6 0.00019 35.8 8.7 101 117-219 58-164 (418)
340 PF08631 SPO22: Meiosis protei 83.8 39 0.00085 31.8 25.2 21 534-554 253-273 (278)
341 PF13174 TPR_6: Tetratricopept 83.7 1.5 3.3E-05 25.0 2.9 25 496-520 3-27 (33)
342 KOG2396 HAT (Half-A-TPR) repea 83.7 52 0.0011 33.2 31.2 392 152-554 103-557 (568)
343 PF02284 COX5A: Cytochrome c o 83.2 7.8 0.00017 29.3 6.8 60 172-232 28-87 (108)
344 KOG0276 Vesicle coat complex C 83.2 23 0.00051 36.3 12.1 73 267-350 649-721 (794)
345 PF08424 NRDE-2: NRDE-2, neces 82.9 25 0.00054 34.0 12.3 131 475-618 48-185 (321)
346 PF04097 Nic96: Nup93/Nic96; 82.8 72 0.0016 34.1 17.7 42 126-167 114-158 (613)
347 KOG1550 Extracellular protein 82.4 70 0.0015 33.7 21.9 246 298-556 261-538 (552)
348 KOG0545 Aryl-hydrocarbon recep 82.3 8.4 0.00018 34.5 7.8 61 496-556 233-293 (329)
349 KOG1308 Hsp70-interacting prot 82.2 1.1 2.4E-05 41.9 2.6 91 470-561 126-216 (377)
350 PRK15180 Vi polysaccharide bio 81.7 22 0.00049 35.2 11.1 89 468-557 333-421 (831)
351 PF13374 TPR_10: Tetratricopep 81.3 3.7 8E-05 24.9 4.2 26 389-414 4-29 (42)
352 KOG3364 Membrane protein invol 81.0 23 0.00049 28.6 9.0 74 455-528 29-106 (149)
353 PF11207 DUF2989: Protein of u 80.8 9.7 0.00021 33.2 7.6 71 440-512 124-197 (203)
354 COG1747 Uncharacterized N-term 80.0 72 0.0016 32.3 23.0 179 354-539 64-251 (711)
355 PRK12798 chemotaxis protein; R 80.0 65 0.0014 31.8 21.5 179 369-553 125-321 (421)
356 TIGR03504 FimV_Cterm FimV C-te 79.9 4 8.7E-05 25.5 3.8 27 531-557 3-29 (44)
357 PF07575 Nucleopor_Nup85: Nup8 79.7 88 0.0019 33.2 16.1 71 275-347 394-464 (566)
358 KOG3364 Membrane protein invol 79.5 22 0.00048 28.7 8.5 65 419-485 29-98 (149)
359 PF07721 TPR_4: Tetratricopept 79.1 4.3 9.3E-05 21.8 3.4 20 463-482 6-25 (26)
360 COG4455 ImpE Protein of avirul 78.3 49 0.0011 29.4 12.1 77 389-467 3-81 (273)
361 COG2909 MalT ATP-dependent tra 77.7 1.1E+02 0.0025 33.3 20.7 186 367-556 426-647 (894)
362 PF09477 Type_III_YscG: Bacter 77.5 30 0.00065 26.6 8.8 85 337-425 22-106 (116)
363 PF09986 DUF2225: Uncharacteri 76.7 15 0.00033 32.9 8.0 65 493-557 118-195 (214)
364 smart00638 LPD_N Lipoprotein N 76.1 1.1E+02 0.0024 32.5 19.7 63 18-84 308-371 (574)
365 COG4455 ImpE Protein of avirul 75.7 12 0.00025 33.0 6.6 67 461-528 4-70 (273)
366 COG5159 RPN6 26S proteasome re 75.5 69 0.0015 29.7 13.4 252 59-311 9-310 (421)
367 KOG4642 Chaperone-dependent E3 74.8 7.7 0.00017 34.6 5.4 85 432-520 20-105 (284)
368 PF10579 Rapsyn_N: Rapsyn N-te 71.8 13 0.00028 26.7 5.0 45 435-479 19-64 (80)
369 PF14561 TPR_20: Tetratricopep 71.5 10 0.00023 28.3 4.8 40 516-555 11-50 (90)
370 KOG4507 Uncharacterized conser 71.4 12 0.00026 38.0 6.5 103 432-538 617-721 (886)
371 PRK13800 putative oxidoreducta 71.1 1.9E+02 0.0041 32.8 27.5 158 279-450 721-880 (897)
372 smart00386 HAT HAT (Half-A-TPR 71.1 8 0.00017 21.6 3.5 29 507-535 1-29 (33)
373 TIGR03504 FimV_Cterm FimV C-te 70.6 11 0.00024 23.6 4.0 25 393-417 5-29 (44)
374 KOG1464 COP9 signalosome, subu 69.5 92 0.002 28.6 16.4 197 283-479 23-252 (440)
375 PF13762 MNE1: Mitochondrial s 69.4 32 0.0007 28.3 7.5 45 89-133 80-125 (145)
376 COG3947 Response regulator con 69.4 99 0.0022 28.9 13.6 59 460-519 281-339 (361)
377 PF06552 TOM20_plant: Plant sp 69.3 6.4 0.00014 33.5 3.6 33 509-541 51-83 (186)
378 KOG2063 Vacuolar assembly/sort 69.0 1.9E+02 0.0041 32.1 15.1 25 56-80 507-531 (877)
379 KOG2066 Vacuolar assembly/sort 68.1 1.8E+02 0.0039 31.4 28.1 141 226-386 394-535 (846)
380 KOG3807 Predicted membrane pro 68.0 93 0.002 29.5 10.9 20 511-530 380-399 (556)
381 PHA02875 ankyrin repeat protei 67.9 1.2E+02 0.0026 30.5 13.4 22 229-250 204-225 (413)
382 PF13929 mRNA_stabil: mRNA sta 67.7 1.1E+02 0.0023 28.7 12.7 142 2-148 113-263 (292)
383 PF06552 TOM20_plant: Plant sp 66.3 18 0.00038 31.0 5.6 47 508-561 95-141 (186)
384 PF12862 Apc5: Anaphase-promot 66.3 21 0.00046 26.9 5.7 53 503-555 8-69 (94)
385 cd00280 TRFH Telomeric Repeat 66.2 86 0.0019 27.0 11.5 26 502-528 120-145 (200)
386 cd08819 CARD_MDA5_2 Caspase ac 66.1 33 0.00072 25.2 6.1 65 107-173 21-85 (88)
387 KOG4077 Cytochrome c oxidase, 65.7 51 0.0011 26.3 7.4 59 405-465 67-125 (149)
388 COG2909 MalT ATP-dependent tra 65.2 2.2E+02 0.0047 31.3 26.4 217 333-552 427-684 (894)
389 PF07720 TPR_3: Tetratricopept 64.1 24 0.00052 20.9 4.4 29 496-524 4-34 (36)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 63.7 44 0.00095 26.9 7.3 42 511-552 81-124 (126)
391 PF07163 Pex26: Pex26 protein; 63.1 99 0.0022 28.7 9.9 85 293-379 90-181 (309)
392 KOG0376 Serine-threonine phosp 63.1 5.8 0.00013 39.2 2.5 98 429-530 11-109 (476)
393 PF07163 Pex26: Pex26 protein; 62.9 63 0.0014 29.9 8.6 87 394-481 90-181 (309)
394 PF13762 MNE1: Mitochondrial s 62.3 82 0.0018 26.0 8.6 82 125-207 41-132 (145)
395 cd08819 CARD_MDA5_2 Caspase ac 61.7 63 0.0014 23.9 7.2 65 341-407 22-86 (88)
396 PHA02875 ankyrin repeat protei 61.7 82 0.0018 31.7 10.8 53 234-286 175-230 (413)
397 COG0790 FOG: TPR repeat, SEL1 60.6 1.5E+02 0.0033 28.0 18.6 48 508-558 206-268 (292)
398 PF04190 DUF410: Protein of un 60.5 1.5E+02 0.0032 27.7 17.1 82 222-314 88-169 (260)
399 smart00777 Mad3_BUB1_I Mad3/BU 60.4 29 0.00062 27.8 5.6 58 488-551 64-123 (125)
400 PRK13800 putative oxidoreducta 60.1 3E+02 0.0066 31.2 24.8 252 248-521 628-880 (897)
401 PF11663 Toxin_YhaV: Toxin wit 59.9 13 0.00028 29.9 3.5 32 65-98 107-138 (140)
402 KOG4077 Cytochrome c oxidase, 59.9 54 0.0012 26.1 6.7 58 173-231 68-125 (149)
403 KOG0890 Protein kinase of the 59.8 4.3E+02 0.0094 32.9 27.1 114 96-215 1391-1508(2382)
404 KOG1498 26S proteasome regulat 59.4 1.8E+02 0.004 28.5 15.3 202 334-569 25-254 (439)
405 PF04190 DUF410: Protein of un 59.0 1.5E+02 0.0033 27.5 18.6 83 354-451 88-170 (260)
406 PF14432 DYW_deaminase: DYW fa 58.1 8.4 0.00018 30.5 2.3 28 563-594 2-29 (116)
407 PF11846 DUF3366: Domain of un 58.0 43 0.00093 29.4 7.1 27 456-482 142-168 (193)
408 PF12862 Apc5: Anaphase-promot 57.9 35 0.00075 25.7 5.6 26 498-523 46-71 (94)
409 PF07064 RIC1: RIC1; InterPro 57.0 1.7E+02 0.0036 27.2 14.4 156 54-218 83-248 (258)
410 PRK13342 recombination factor 56.9 2.2E+02 0.0048 28.7 15.2 101 318-436 173-279 (413)
411 KOG4814 Uncharacterized conser 56.5 1.2E+02 0.0026 31.8 10.2 87 469-555 365-456 (872)
412 PF10579 Rapsyn_N: Rapsyn N-te 56.4 40 0.00086 24.3 5.0 47 399-445 18-66 (80)
413 PF09670 Cas_Cas02710: CRISPR- 56.1 1.9E+02 0.0041 28.8 11.7 51 399-450 143-197 (379)
414 KOG4507 Uncharacterized conser 55.8 50 0.0011 33.9 7.5 134 419-556 568-705 (886)
415 COG4976 Predicted methyltransf 55.0 20 0.00042 31.9 4.1 56 470-526 7-62 (287)
416 COG4976 Predicted methyltransf 54.9 25 0.00054 31.3 4.7 57 503-559 5-61 (287)
417 PF12968 DUF3856: Domain of Un 54.9 1E+02 0.0022 24.4 7.3 59 496-554 58-127 (144)
418 KOG4642 Chaperone-dependent E3 54.7 1.3E+02 0.0029 27.3 9.0 81 366-448 20-104 (284)
419 KOG2396 HAT (Half-A-TPR) repea 54.7 2.5E+02 0.0055 28.6 30.6 67 51-118 103-170 (568)
420 KOG4279 Serine/threonine prote 54.4 3.1E+02 0.0067 29.6 13.5 182 288-526 203-399 (1226)
421 PF10366 Vps39_1: Vacuolar sor 54.1 1E+02 0.0022 24.0 7.9 27 389-415 41-67 (108)
422 PRK10941 hypothetical protein; 52.3 58 0.0013 30.4 7.1 67 461-529 184-251 (269)
423 PF10255 Paf67: RNA polymerase 52.1 85 0.0018 31.2 8.4 56 359-414 125-191 (404)
424 PF10366 Vps39_1: Vacuolar sor 52.1 80 0.0017 24.6 6.8 27 55-81 41-67 (108)
425 PF04781 DUF627: Protein of un 51.8 98 0.0021 24.1 6.9 42 511-552 62-103 (111)
426 KOG3824 Huntingtin interacting 51.0 29 0.00064 32.3 4.7 62 468-530 126-187 (472)
427 KOG2471 TPR repeat-containing 50.6 1.6E+02 0.0036 29.7 9.8 102 365-469 249-380 (696)
428 PF09477 Type_III_YscG: Bacter 50.3 1.2E+02 0.0025 23.5 9.6 51 264-316 49-99 (116)
429 cd08326 CARD_CASP9 Caspase act 50.1 37 0.0008 25.0 4.3 51 253-303 28-78 (84)
430 cd00280 TRFH Telomeric Repeat 48.0 1.1E+02 0.0025 26.3 7.3 29 464-492 117-145 (200)
431 PF14689 SPOB_a: Sensor_kinase 46.2 48 0.001 22.6 4.2 22 427-448 28-49 (62)
432 COG0790 FOG: TPR repeat, SEL1 46.0 2.6E+02 0.0057 26.3 17.6 114 372-489 93-222 (292)
433 PRK15180 Vi polysaccharide bio 45.7 3.4E+02 0.0073 27.5 24.9 117 61-182 297-419 (831)
434 PF14669 Asp_Glu_race_2: Putat 45.6 2.1E+02 0.0045 25.0 12.6 93 145-248 98-205 (233)
435 PF11817 Foie-gras_1: Foie gra 45.5 76 0.0016 29.3 6.8 19 430-448 186-204 (247)
436 COG4259 Uncharacterized protei 45.3 99 0.0022 23.4 5.8 51 478-530 57-109 (121)
437 KOG4567 GTPase-activating prot 44.8 1.9E+02 0.0041 27.4 8.7 42 109-150 264-305 (370)
438 PF11663 Toxin_YhaV: Toxin wit 44.0 11 0.00024 30.2 0.9 33 469-503 106-138 (140)
439 KOG0376 Serine-threonine phosp 43.7 41 0.0009 33.6 4.8 104 394-505 11-117 (476)
440 PF14561 TPR_20: Tetratricopep 43.4 1.4E+02 0.003 22.3 8.5 47 496-542 25-73 (90)
441 COG5191 Uncharacterized conser 43.4 48 0.001 31.1 4.9 82 453-535 102-184 (435)
442 PF13934 ELYS: Nuclear pore co 43.0 2.6E+02 0.0056 25.4 10.0 105 389-505 78-184 (226)
443 PF11846 DUF3366: Domain of un 42.9 86 0.0019 27.5 6.6 34 186-219 140-173 (193)
444 TIGR02270 conserved hypothetic 42.9 3.7E+02 0.008 27.1 22.8 24 360-383 256-279 (410)
445 COG4941 Predicted RNA polymera 42.4 3.2E+02 0.007 26.3 11.8 121 403-528 272-400 (415)
446 PRK10564 maltose regulon perip 42.2 53 0.0011 30.8 5.0 38 288-325 259-296 (303)
447 PF13170 DUF4003: Protein of u 42.1 3.1E+02 0.0068 26.1 19.7 149 403-554 78-244 (297)
448 PF11768 DUF3312: Protein of u 41.5 4.3E+02 0.0093 27.5 11.8 56 360-415 412-472 (545)
449 PRK10564 maltose regulon perip 40.9 57 0.0012 30.6 5.1 40 389-428 259-298 (303)
450 TIGR02710 CRISPR-associated pr 40.7 3.8E+02 0.0081 26.6 11.8 22 396-417 139-160 (380)
451 KOG0686 COP9 signalosome, subu 40.0 3.9E+02 0.0084 26.6 12.7 170 225-395 151-352 (466)
452 KOG4521 Nuclear pore complex, 39.8 6.4E+02 0.014 29.0 15.3 106 362-475 926-1071(1480)
453 PF15469 Sec5: Exocyst complex 39.6 2.5E+02 0.0055 24.3 9.9 24 427-450 91-114 (182)
454 KOG3636 Uncharacterized conser 39.6 3.1E+02 0.0068 27.3 9.7 88 415-504 176-271 (669)
455 PF14689 SPOB_a: Sensor_kinase 39.4 51 0.0011 22.5 3.5 27 389-415 25-51 (62)
456 PF10255 Paf67: RNA polymerase 39.3 67 0.0015 31.9 5.6 58 462-519 126-190 (404)
457 PF04090 RNA_pol_I_TF: RNA pol 39.0 2.7E+02 0.006 24.5 9.4 30 387-416 41-70 (199)
458 PF11848 DUF3368: Domain of un 39.0 1E+02 0.0022 19.6 5.2 33 398-430 13-45 (48)
459 PF04762 IKI3: IKI3 family; I 38.8 6.5E+02 0.014 28.8 14.9 29 357-385 813-843 (928)
460 PF01347 Vitellogenin_N: Lipop 38.8 5.3E+02 0.011 27.7 15.5 59 21-82 347-407 (618)
461 PF04910 Tcf25: Transcriptiona 37.6 4.1E+02 0.009 26.2 17.1 125 220-348 36-166 (360)
462 KOG2300 Uncharacterized conser 37.5 4.7E+02 0.01 26.7 33.0 89 298-386 335-434 (629)
463 KOG3824 Huntingtin interacting 36.3 57 0.0012 30.5 4.2 50 433-485 127-177 (472)
464 PF04910 Tcf25: Transcriptiona 36.2 4.4E+02 0.0094 26.0 18.9 54 395-448 111-165 (360)
465 PF11838 ERAP1_C: ERAP1-like C 35.4 4.1E+02 0.0088 25.5 16.7 83 437-522 145-230 (324)
466 cd08326 CARD_CASP9 Caspase act 35.3 1.8E+02 0.0039 21.4 6.5 39 368-406 42-80 (84)
467 PF08424 NRDE-2: NRDE-2, neces 34.9 4.3E+02 0.0092 25.6 14.8 134 386-523 18-184 (321)
468 PF00244 14-3-3: 14-3-3 protei 34.8 3.6E+02 0.0078 24.6 12.8 166 392-558 6-200 (236)
469 PF14863 Alkyl_sulf_dimr: Alky 34.4 1.1E+02 0.0024 25.2 5.3 63 474-542 57-119 (141)
470 COG0735 Fur Fe2+/Zn2+ uptake r 34.4 2.3E+02 0.0049 23.5 7.2 41 431-472 29-69 (145)
471 PF13934 ELYS: Nuclear pore co 33.8 3.6E+02 0.0079 24.4 12.2 21 393-413 114-134 (226)
472 PF10516 SHNi-TPR: SHNi-TPR; 33.5 1.1E+02 0.0023 18.5 3.8 27 529-555 3-29 (38)
473 cd08332 CARD_CASP2 Caspase act 33.4 85 0.0018 23.5 4.1 34 267-300 46-79 (90)
474 KOG0128 RNA-binding protein SA 33.4 6.9E+02 0.015 27.5 27.0 196 50-251 110-339 (881)
475 KOG2297 Predicted translation 33.4 4.3E+02 0.0093 25.1 11.4 69 335-408 269-342 (412)
476 PF09670 Cas_Cas02710: CRISPR- 33.2 5E+02 0.011 25.8 12.4 55 295-350 140-198 (379)
477 PRK11639 zinc uptake transcrip 32.6 1.9E+02 0.0042 24.7 6.8 59 414-474 18-76 (169)
478 COG0735 Fur Fe2+/Zn2+ uptake r 32.2 2.5E+02 0.0054 23.3 7.2 32 292-323 26-57 (145)
479 KOG0991 Replication factor C, 32.0 4E+02 0.0086 24.3 11.6 45 378-423 230-274 (333)
480 PF02847 MA3: MA3 domain; Int 31.8 1.5E+02 0.0032 23.0 5.7 22 291-312 7-28 (113)
481 TIGR01503 MthylAspMut_E methyl 31.2 5.8E+02 0.013 25.9 11.4 262 301-607 29-322 (480)
482 PRK14962 DNA polymerase III su 31.1 6.1E+02 0.013 26.2 11.1 25 101-125 256-280 (472)
483 KOG2422 Uncharacterized conser 30.7 6.5E+02 0.014 26.4 17.0 49 365-413 351-404 (665)
484 KOG0545 Aryl-hydrocarbon recep 30.4 4.3E+02 0.0094 24.2 11.1 70 460-530 232-301 (329)
485 PRK13184 pknD serine/threonine 30.2 8.7E+02 0.019 27.7 20.8 249 294-552 483-829 (932)
486 COG2912 Uncharacterized conser 29.9 2.3E+02 0.005 26.3 7.0 60 497-556 185-244 (269)
487 KOG2034 Vacuolar sorting prote 29.6 8.2E+02 0.018 27.2 23.1 302 92-414 362-688 (911)
488 TIGR02270 conserved hypothetic 29.2 6.1E+02 0.013 25.6 22.9 99 60-166 45-143 (410)
489 PRK11639 zinc uptake transcrip 29.1 2.3E+02 0.0049 24.3 6.6 36 336-371 40-75 (169)
490 PF08311 Mad3_BUB1_I: Mad3/BUB 29.0 3.1E+02 0.0066 22.1 8.2 42 440-482 81-123 (126)
491 PF12796 Ank_2: Ankyrin repeat 28.8 1.6E+02 0.0035 21.4 5.2 49 34-88 6-54 (89)
492 PHA02537 M terminase endonucle 27.9 3.6E+02 0.0078 24.5 7.8 109 397-528 93-213 (230)
493 cd08323 CARD_APAF1 Caspase act 27.7 1.7E+02 0.0038 21.6 4.9 34 267-300 40-73 (86)
494 PF11817 Foie-gras_1: Foie gra 27.6 2.8E+02 0.0061 25.5 7.5 25 461-485 181-205 (247)
495 PF15297 CKAP2_C: Cytoskeleton 27.4 2.8E+02 0.006 26.9 7.2 50 474-523 119-170 (353)
496 PLN03192 Voltage-dependent pot 27.2 9.3E+02 0.02 27.1 12.8 16 234-249 662-677 (823)
497 KOG3636 Uncharacterized conser 27.1 6.3E+02 0.014 25.4 9.5 84 314-398 176-271 (669)
498 PF02184 HAT: HAT (Half-A-TPR) 26.8 1.2E+02 0.0026 17.5 3.0 25 437-464 2-26 (32)
499 COG5108 RPO41 Mitochondrial DN 26.6 2.5E+02 0.0054 29.7 7.2 73 392-468 33-113 (1117)
500 KOG2659 LisH motif-containing 26.2 4.9E+02 0.011 23.5 8.8 91 289-381 29-128 (228)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-92 Score=766.19 Aligned_cols=598 Identities=35% Similarity=0.671 Sum_probs=572.1
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
+.+.++|..+.+.|..++..++|.|+.+|+ +.|+++.|+++|++|++||+++||.+|.+|++.|++++|+++|++|..
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~--~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~ 180 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFV--RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHH--hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHH
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSI 161 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 161 (619)
.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|.|+.+|+++|+++.|.++|++|++||.++||++|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCCh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 240 (619)
.+|++.|++++|+++|++|.. .|+.||..||+.++.+|+..|+.+.+.+++..+.+. +.||..+|++|+.+|+++|++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 999999999999999999999 899999999999999999999999999999999998 999999999999999999999
Q ss_pred hhHHHHhccCCCCCchhHHHHHHHHH------------------------------------------------------
Q 007077 241 SEARELFDEMPNKNVICWTSMVSGYV------------------------------------------------------ 266 (619)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~li~~~~------------------------------------------------------ 266 (619)
++|.++|++|.+||.++|+.+|.+|+
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999999999888888887777777
Q ss_pred ----------------hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007077 267 ----------------NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTG 330 (619)
Q Consensus 267 ----------------~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (619)
++|++++|.++|++|..+|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 455666666666667777888888888888888999999999999975 699999999999999
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 411 SQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 411 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|+++|++++|.+++++|+..
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~--- 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT--- 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC---
Confidence 99999999999999999999999999999999999999977799999999999999999999999999999999744
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEEC
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEIN 570 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 570 (619)
|+..+|++|+.+|..+|+.+.|+...+++.+++|+++..|..|+++|...|+|++|.++++.|++.|+++.||+|||+++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 571 GIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
++++.|.++|.+||+.++||..|+.+..+|++.|++-
T Consensus 735 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 735 GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred CEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 9999999999999999999999999999999999874
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-80 Score=657.30 Aligned_cols=524 Identities=32% Similarity=0.536 Sum_probs=501.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCC-CCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH
Q 007077 50 SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERG-VSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNS 128 (619)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 128 (619)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChh
Q 007077 209 GKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287 (619)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 287 (619)
+.+++..+.+. +.+|..++++|+++|+++|++++|.++|++|. .+|++
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------~~~~v 291 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------EKTTV 291 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCChh
Confidence 99999999888 88888888888888888888888887666654 55778
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|++|+..++++|+++|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
|.+.+++.|+..+|++++++|+++|++++|.+++++|... |+..+|++++.+|..+|+++.|+.+++++.++.|++.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~---p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 9988899999999999999999999999999999998644 4556699999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
..|..|+++|.+.|+|++|.+++++|++.|+.+.||++|+++++.++.|.+++..||+.+++|..+.++..+|++.|++-
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred c
Q 007077 608 M 608 (619)
Q Consensus 608 ~ 608 (619)
.
T Consensus 609 ~ 609 (697)
T PLN03081 609 E 609 (697)
T ss_pred C
Confidence 3
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-70 Score=599.50 Aligned_cols=587 Identities=22% Similarity=0.303 Sum_probs=506.2
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccC----CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSI----QSPCLLAYNLLIKAFAKKGSFRKSLLLFS 77 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 77 (619)
+++.+++..|.+.|++|+..+|..++..|. +.+.++.+.+++..+ ..+++..+|++|..|++.|+.+.|+++|+
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 467889999999999999999999999999 899999999999754 46788999999999999999999999999
Q ss_pred HhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCC
Q 007077 78 KLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKD 153 (619)
Q Consensus 78 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~ 153 (619)
+|. +||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++..+.+++..+. .+|
T Consensus 146 ~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 146 KMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred cCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 996 479999999999999999999999999999999999999999999999999999999999988876 489
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLD 232 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~ 232 (619)
+.+||++|.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|..++..|.+. +.||..+|+.++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999954 78899999999999999999999999999988 9999999999999
Q ss_pred HHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (619)
++++.|+++.|.+++..|.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAA 388 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (619)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|.+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-------------
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ------------- 455 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------------- 455 (619)
+|++++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|.++.+.+++..+.+. |+.
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHH
Confidence 999999999999999999999999986 58999999999999888888888888887777654 554
Q ss_pred -----------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007077 456 -----------------PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518 (619)
Q Consensus 456 -----------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (619)
||..+|+.|+.+|++.|+.++|+++|++|...+..|+..||++++.+|.+.|++++|.++|+.
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 555666677777777777777777777777666666666777777777777777777777777
Q ss_pred HhccC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCce-------eEEEECCEEEEEEeC--CCCCCchH
Q 007077 519 LEKIE--SKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGC-------SSIEINGIIHEFLVG--DPSHSEMK 587 (619)
Q Consensus 519 ~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~ 587 (619)
|.+.. .++...|.+++++|.+.|++++|.+++++|. +.|++.. ..++-+....+.... -...|...
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 75221 2233447777777777777777777777764 3333211 001111111111110 02467777
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007077 588 EIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 588 ~~~~~l~~~~~~~~~~~ 604 (619)
..|..|.++|....+..
T Consensus 692 ~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 692 GYYILLCNLYADAGKWD 708 (857)
T ss_pred chHHHHHHHHHHCCChH
Confidence 78888887775444433
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-67 Score=556.86 Aligned_cols=508 Identities=18% Similarity=0.257 Sum_probs=367.7
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCc-----ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCL-----LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
++...|..++..++ +.|++++|.++|++|+.++. ..++.++..|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 368 ~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 368 RKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 33445555555555 56666666666666653332 2334445556666666666666665543 5666666
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCCeecHHHHHHHHHcCC
Q 007077 93 FVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKDVVSWNVSISGHVKCM 168 (619)
Q Consensus 93 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 168 (619)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+++|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 6666666666666666666666666666666666666666666666666666666665 355666666666666666
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH--h-ccCChhHHHHHHHHHHhcCChhhHHH
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ--E-LEFTPIMGNALLDMYCKCGCLSEARE 245 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (619)
++++|+++|+.|.. .|+.||..+|+.++.+|++.|+++.|.++++.|.. . +.||..+|++++.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666655 56666666666666665555555555555555543 1 45555555555555555555555555
Q ss_pred HhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007077 246 LFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 325 (619)
+|+.|.+.+ ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 601 lf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 601 VYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred HHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 555543321 25577888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhCC
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSIICGLAMNG 401 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g 401 (619)
.++.+|++.|++++|.++++.|.+.|+.|+..+|++|+.+|+++|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888888888888888888884 578888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hc------
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG----RA------ 471 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~------ 471 (619)
++++|.++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..+. ++
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888888888888888888888888888888888888888888776 88888888888876533 22
Q ss_pred -------------CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHHHHHHHH
Q 007077 472 -------------GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE-KIESKDSSFHTLLANIY 537 (619)
Q Consensus 472 -------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~ 537 (619)
+..++|..+|++|...+..|+..+|+.++.++.+.+..+.+..+++.+. ...+++..+|..+++.+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 2346799999999999999999999999988888899999988888764 34556677799999987
Q ss_pred HhCCChHHHHHHHHHHHhCCCcccC
Q 007077 538 ASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.+. .++|..++++|...|+.|..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCc
Confidence 432 36899999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-64 Score=540.91 Aligned_cols=490 Identities=17% Similarity=0.225 Sum_probs=406.6
Q ss_pred chHHHHHHHHHHhCC-CCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 2 TQLKQIQAQIFQIGL-QQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
+.+.++++.|.+.|+ +++..+++.++..|. +.|.+++|.++|+.|+.||..+||.+|.+|++.|+++.|.++|++|.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--HCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 568899999999995 678888999999999 99999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCCeec
Q 007077 81 ERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKDVVS 156 (619)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 156 (619)
+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 489999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHh-cCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHH
Q 007077 157 WNVSISGHVKCMRFEDAVDVFRRMRQ-GCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMY 234 (619)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~ 234 (619)
|+.+|.+|++.|++++|.++|++|.. ..|+.||..+|+.++.+|++.|+++.|.++++.+.+. ++++..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999999999999999999975 2578999999999999999999999999999999998 899999999999999
Q ss_pred HhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007077 235 CKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
++.|++++|.++|++|.+. ...||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 625 ~k~G~~deAl~lf~eM~~~---------------------------Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKK---------------------------GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999998652 2245556666666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhH
Q 007077 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASW 390 (619)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 390 (619)
.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666654 2466666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------cCcHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH-----------------------GGLVDEGRRFFNT 447 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~ 447 (619)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .+..+.|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 66666666666666666666666666666666666666544321 1224679999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
|.+. |+.||..+|+.++.++.+.+..+.+..+++.|...+..++..+|++++.++.+. .++|..++++|...+
T Consensus 838 M~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 838 TISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9987 999999999999999989999999999999998888888888899999987432 468999999996443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-61 Score=513.28 Aligned_cols=418 Identities=24% Similarity=0.439 Sum_probs=396.0
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
+.++++|..|.+.|+.||+.+||.|+.+|+ +.|+++.|+++|++|+.||+++||.+|.+|++.|++++|+++|++|.+
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHH
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSI 161 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 161 (619)
.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.++|++|+++|+++||++|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCCh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 240 (619)
.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|.++.|.++++.+.+. ++++..++++|+++|+++|++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 999999999999999999998 899999999999999999999999999999999988 889999999999999988888
Q ss_pred hhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 007077 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 320 (619)
++|.++|++|. .+|+.+||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 377 ~~A~~vf~~m~-------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 377 EDARNVFDRMP-------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCC-------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 88888776664 45778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHH
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINE-NRITVDAVVATALIEMYAKCGLIEKALEIFYELR-EKDAASWTSIICGLA 398 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~ 398 (619)
..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++|+.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999976 6999999999999999999999999999999986 679999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
..|+.+.|..+++++.+. .|+ ..+|..++..|++.|++++|.++++.|.+. |+.+
T Consensus 506 ~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999999754 665 569999999999999999999999999887 7654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-34 Score=321.29 Aligned_cols=539 Identities=12% Similarity=0.029 Sum_probs=387.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 4 LKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
+.+.+..+++.. +.++..+..+...+. +.|++++|...++.+. +.+...|+.+...+.+.|++++|.+.|+++.
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 334455556666666 6777777777766543 3345566677777777777777777777776
Q ss_pred HCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecH
Q 007077 81 ERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSW 157 (619)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 157 (619)
+.. +.+...+..+...+...|++++|...++.+.+.... .......++..|.+.|++++|..+++.+.. ++..+|
T Consensus 391 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 468 (899)
T TIGR02917 391 ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLH 468 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 642 224445556666666777777777777777664422 233445566677777777777777776653 345577
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 007077 158 NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKC 237 (619)
Q Consensus 158 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (619)
..+...+...|++++|...|+++.+ ..+.+...+..+...+...|+++.|...++.+.+..|.+..++..+...+.+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALS--IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 7777777788888888888877765 12333445566666677778888888888877777777777777788888888
Q ss_pred CChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 007077 238 GCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFRE 311 (619)
Q Consensus 238 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (619)
|+.++|...|+++.+ .+...+..++..+.+.|++++|...++.+. +.+...|..++.+|...|++++|+..|++
T Consensus 547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777654 344566777788888888888888877654 34567788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Chh
Q 007077 312 MQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAA 388 (619)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 388 (619)
+.+.. +.+...+..+..++.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+. +..
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 77643 2345567777777888888888888888877654 555677778888888888888888888877642 556
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
.+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+...+..++..|
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 6777778888888888888888888876 455566777778888888888888888887763 355677788888888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.+.|++++|.+.|+++... .+.+..+++.+...+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887732 44456668888888888888 778888888888888888888888888888888888888
Q ss_pred HHHHHHhCC
Q 007077 549 VRQKMKEMG 557 (619)
Q Consensus 549 ~~~~m~~~~ 557 (619)
.++++.+.+
T Consensus 859 ~~~~a~~~~ 867 (899)
T TIGR02917 859 LLRKAVNIA 867 (899)
T ss_pred HHHHHHhhC
Confidence 888887644
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-34 Score=319.27 Aligned_cols=539 Identities=12% Similarity=0.053 Sum_probs=463.9
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKL 79 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 79 (619)
.+.+.+..++... +.++..+..+...|. +.|++++|.+.|++.. +.+...|..+...+...|++++|++.|+.+
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYL--ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3445555555443 456778888888888 9999999999998763 456677888889999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeec
Q 007077 80 RERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVS 156 (619)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 156 (619)
.+... .+......++..+.+.|++++|..+++.+.+. .+++..++..+...|...|++++|.+.|+++.+ .+...
T Consensus 424 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 424 AQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 87642 23445667788889999999999999999874 345677899999999999999999999998754 34557
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 007077 157 WNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCK 236 (619)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (619)
+..+...+...|++++|.+.|+.+.. ..+.+..++..+...+...|+.+.|..+++.+.+..+.+...+..++..|.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH
Confidence 78888999999999999999999976 2345667888888889999999999999999988888888899999999999
Q ss_pred cCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHH
Q 007077 237 CGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFR 310 (619)
Q Consensus 237 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 310 (619)
.|++++|..+++.+.+ .+...|..+...+...|++++|...|+++. +.+...+..+...+.+.|++++|...|+
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999875 466789999999999999999999998764 4467789999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh
Q 007077 311 EMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAA 388 (619)
Q Consensus 311 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 388 (619)
++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.. ++..
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 737 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch
Confidence 998753 3356788899999999999999999999998876 66778888999999999999999999999864 4557
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+.+.+. .+++...++.++..+
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 78889999999999999999999999873 345668888889999999999999999999874 356788899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
...|+ .+|+.+++++... .+.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|.+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 8899999988732 233444588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
++++|.+
T Consensus 893 ~~~~~~~ 899 (899)
T TIGR02917 893 ELDKLLN 899 (899)
T ss_pred HHHHHhC
Confidence 9999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.9e-25 Score=245.73 Aligned_cols=413 Identities=12% Similarity=0.013 Sum_probs=327.4
Q ss_pred HHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH------------
Q 007077 130 MDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV------------ 194 (619)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------ 194 (619)
...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+...-.++...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4567788999999999998764 3 567888999999999999999999999876222112211121
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--C-CchhHHHHHHHHHhcCCH
Q 007077 195 STLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--K-NVICWTSMVSGYVNCGQL 271 (619)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 271 (619)
.....+...|++++|...++.+.+..|.+...+..+..+|...|++++|++.|+++.+ | +...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1233567889999999999999999888888999999999999999999999999875 3 3445666777664 4678
Q ss_pred HHHHHHHccCCCCC------------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHH
Q 007077 272 EKARDLFDRSPVRD------------IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGALE 338 (619)
Q Consensus 272 ~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~ 338 (619)
++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 99999988765321 223556677888999999999999999875 45 4456778888999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHhCCChHH
Q 007077 339 QGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD----A---------ASWTSIICGLAMNGKINK 405 (619)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~ 405 (619)
+|...++.+.+.. +.++..+..+...+...|+.++|+..++.+.... . ..+..+...+...|++++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998754 4456666666667788999999999999886431 1 122345677889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 406 ALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 406 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|..+++. . +++...+..+...+...|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++...
T Consensus 592 A~~~l~~---~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ---Q--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh---C--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2 344557777888999999999999999999874 24457889999999999999999999999887
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 486 NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS------FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.. .+.+..++..+..++...|++++|.++++++....|+++. .+..++.++...|++++|++.+++..
T Consensus 665 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 3334445777888899999999999999999988776543 56677999999999999999999985
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5.1e-25 Score=246.80 Aligned_cols=537 Identities=11% Similarity=0.032 Sum_probs=325.9
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC--CCC-cccH----------------HHHHHHH
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ--SPC-LLAY----------------NLLIKAF 63 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~----------------~~li~~~ 63 (619)
.+++.+.++.... |.++.++..+...+. +.|+.++|.+.+++.. .|+ ...+ ..+.+.+
T Consensus 46 ~a~~~l~kl~~~~-p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 46 LVRQSLYRLELID-PNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHHccC-CCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 4455555554432 345777777778877 8899999988888764 232 2221 2233467
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCccc-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFT-YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNV 142 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 142 (619)
.+.|++++|++.|+.+.+.+ +|+... ...........|+.++|...++.+.+... .+...+..+...+...|+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHH
Confidence 78889999999999887653 333321 11112222345888889999988888642 3556777888888888999989
Q ss_pred HHHHccCCCCCee------cH-----------------HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH
Q 007077 143 KKLFDEMPDKDVV------SW-----------------NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA 199 (619)
Q Consensus 143 ~~~~~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 199 (619)
...++++...... .| ...+..+-.....+.|...+..... ....|+... ......
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~-~~~dp~~~~-~~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK-QLADPAFRA-RAQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH-hccCcchHH-HHHHHH
Confidence 8888876431110 11 1111111111122334444443322 111222111 122334
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCc---hhHH------------HHH
Q 007077 200 CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNV---ICWT------------SMV 262 (619)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li 262 (619)
+...|+++.|...++.+.+..|.+..++..+..+|.+.|++++|+..|++..+ |+. ..|. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 56678888888888888777777777888888888888888888888877654 221 1121 123
Q ss_pred HHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH-------
Q 007077 263 SGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGC------- 331 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~------- 331 (619)
..+.+.|++++|...|++.. +.+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHH
Confidence 45667788888888887654 335566777777888888888888888887764 233 22333333333
Q ss_pred -----------------------------------HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 332 -----------------------------------AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 332 -----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
...|++++|.+.+++..+.. +.+..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33445555555555544432 223344444555555555555555
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCcHHHHHHH
Q 007077 377 EIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI---------TFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 377 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~ 444 (619)
..|+++.+ .+...+..+...+...++.++|+..++++......++.. .+......+...|+.++|..+
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55554432 123333333333444555555555554433221111110 112233445566666777666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++. .+++...+..+...+.+.|++++|++.|+++... .+.+...+..++..+...|++++|++.++++.+..|
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 551 2345566777888888889999999888887732 444556688888888888999999999988888888
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 525 KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 525 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+++.++..++.++...|++++|.++++++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888888899999999988888754
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.4e-21 Score=209.08 Aligned_cols=513 Identities=11% Similarity=-0.003 Sum_probs=354.9
Q ss_pred HHHHHHHHhccCCCCChhHHHHhhccC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 007077 22 TLNKLMVFCTHPSHGNLLYAEKIFGSI---QSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV 98 (619)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (619)
++..+..++.....|++++|...|++. .|.+..++..|...|.+.|++++|+..+++..+. .|+...|..++..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh
Confidence 444455555433569999999999865 3556778899999999999999999999999886 45555555544333
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH--------hHhcCChhHHHHHHccCCCCC--eecHHHH-HHHHHcC
Q 007077 99 GWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM--------YGVLGKICNVKKLFDEMPDKD--VVSWNVS-ISGHVKC 167 (619)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~ 167 (619)
++.++|..+++++.+... -+..++..+... |.+.++..++++ .....|+ ....... ...|.+.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 889999999999998653 234455555554 777766666766 3333343 4444444 8899999
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHH
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA-LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAREL 246 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 246 (619)
|++++|++++..+.+ .+ +.+......+-.++.. .++ +.+..++. +....++.+...+++.|.+.|+.++|.++
T Consensus 196 ~dw~~Ai~lL~~L~k-~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~---~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQ-QN-TLSAAERRQWFDVLLAGQLD-DRLLALQS---QGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhc---hhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987 33 3334445556566666 355 66666644 23457888999999999999999999999
Q ss_pred hccCCC-----CCchhHHHH------------------------------HHHHH-------------------------
Q 007077 247 FDEMPN-----KNVICWTSM------------------------------VSGYV------------------------- 266 (619)
Q Consensus 247 ~~~~~~-----~~~~~~~~l------------------------------i~~~~------------------------- 266 (619)
++++.. |+..+|--+ +..+.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 998864 222222111 22222
Q ss_pred --------------------------------------hcCCHHHHHHHHccCCC--C----ChhhHHHHHHHHHHcCC-
Q 007077 267 --------------------------------------NCGQLEKARDLFDRSPV--R----DIVLWTAMINGYVQFNR- 301 (619)
Q Consensus 267 --------------------------------------~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~- 301 (619)
+.|+.++|..+|+.... + +....+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 33444445444443322 1 11122234444444433
Q ss_pred --hhHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 007077 302 --FDEAVAL----------------------FREMQI-IRL-KP--DKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353 (619)
Q Consensus 302 --~~~A~~~----------------------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (619)
..++..+ +..... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 2222222 111100 011 12 33444555544444 67777777666666543
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLS 430 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 430 (619)
|+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++.++. .|+.. .+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 4444333445555689999999999987653 34556777788888999999999999999877 45443 3334444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|++.+++... -++.+...++.+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~-l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALE-LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHH
Confidence 555679999999999998854 57888899999999999999999999998883 34555567888998999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+|+..++++.++.|+++.++..++.+|...|++++|...+++..+..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999987643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.5e-21 Score=207.17 Aligned_cols=539 Identities=10% Similarity=-0.024 Sum_probs=381.0
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ--SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
++...+.+.++..+.. +.++..|...|. +.|+.++|+..+++.. .|+-..|..++..+ +++.+|..+++++.
T Consensus 62 ~A~~~l~~Al~~dP~n-~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 62 TAIREFEYIHQQVPDN-IPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 4556667777666444 788889999998 9999999999988654 23333333333222 77777888888776
Q ss_pred HCCC------------------------------------CCC--cccHHHH-HHHHhccCChhHHHHHHHHHHHhCCCC
Q 007077 81 ERGV------------------------------------SPD--NFTYPFV-FKAVGWLGEVKKGEKVHGYVVKTGLEF 121 (619)
Q Consensus 81 ~~~~------------------------------------~p~--~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~ 121 (619)
+... +|+ ....... ...|.+.++++.|..++..+.+.+. .
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l 214 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-L 214 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-C
Confidence 6521 111 1112222 4556667777778888888777654 2
Q ss_pred ChhhHHHHHHHhHh-cCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH-
Q 007077 122 DTYVCNSIMDMYGV-LGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA- 199 (619)
Q Consensus 122 ~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~- 199 (619)
+......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|...++++.....-.|+..++.-.+.-
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 34445556566666 366 777777665445577788899999999999999999999986622223444444333321
Q ss_pred -----------------------------hhcCCChHHHHHH-----------------------------HHHHHHhcc
Q 007077 200 -----------------------------CTALKNLELGKEI-----------------------------HRYINQELE 221 (619)
Q Consensus 200 -----------------------------~~~~~~~~~a~~~-----------------------------~~~~~~~~~ 221 (619)
+...+.++.+.++ +..+.+..|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 2222333322222 222222223
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCC--C----CchhHHHHHHHHHhcCC---HHHHHHH---------------
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPN--K----NVICWTSMVSGYVNCGQ---LEKARDL--------------- 277 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~--------------- 277 (619)
.+....--+.-...+.|+.++|.++|+.... + +...-+.++..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 3444444444556678999999999988765 2 22234467777776655 2233222
Q ss_pred ----------HccCC---CC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 007077 278 ----------FDRSP---VR--DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKW 342 (619)
Q Consensus 278 ----------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 342 (619)
+.... ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 11221 23 56778888888877 8999999988887764 4776655555566678999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCC
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSI---ICGLAMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
.++.+... +|+...+..+..++.+.|+.++|...|++..+.++...+.. ...+...|++++|...+++.++. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 44455566778889999999999999998876554444333 33344559999999999999987 7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 420 PDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 420 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
|+...+..+..++.+.|+.++|...++..... -+.+...++.+...+...|++++|++.+++... ..|.+...+..+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-l~P~~~~a~~nL 683 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK-GLPDDPALIRQL 683 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 78788999999999999999999999999864 234477888899999999999999999998873 244555679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
..++...|++++|+..++++.++.|++..+....+++..+..+++.|.+-+++.....+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999988887654443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-23 Score=196.78 Aligned_cols=450 Identities=14% Similarity=0.114 Sum_probs=322.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHh
Q 007077 56 YNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGV 135 (619)
Q Consensus 56 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 135 (619)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3455555666777777766555443332 2222333333334444444544443333333211 1233456666666666
Q ss_pred cCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 007077 136 LGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEI 212 (619)
Q Consensus 136 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 212 (619)
.|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|....+ +.|+...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~c-------------------- 185 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYC-------------------- 185 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhh--------------------
Confidence 6666666666665553 2 334566666666666666666666665533 3344332
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHccCCCCC---h
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KN-VICWTSMVSGYVNCGQLEKARDLFDRSPVRD---I 286 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 286 (619)
+.+.+.......|++++|...|-+..+ |. .+.|+.|.-.+-..|++..|+..|++...-| .
T Consensus 186 -------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 186 -------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred -------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 233344444455666666665555443 22 2356666666667777777777776655433 3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
..|-.|...|...+.+++|+..|.+... ..|+. ..+..+...|...|.++.|+..+++.++.. +.-+..|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence 5788888999999999999999988766 45654 477778888889999999999999998875 4457789999999
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHH
Q 007077 366 YAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 441 (619)
+...|++.+|...|++... ....+.+.|...|...|.+++|..+|....+- .|.. ..++.+...|-++|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999999999999998764 35778999999999999999999999998876 7774 5889999999999999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 442 RRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+++.. .+.|+ ...|+.+...|-..|+...|++.+.+... -.+.....++.|...|...|++.+|+..|+.+.
T Consensus 408 i~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 408 IMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999988 66888 67899999999999999999999999883 356667779999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 521 KIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+++|+.+.+|-.++.++.--.+|.+--+-+++
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999999998887776666663333333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=9.1e-22 Score=186.89 Aligned_cols=421 Identities=13% Similarity=0.095 Sum_probs=335.2
Q ss_pred HHHHHHhHhcCChhHHHHHHccCCCCCee---cHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC
Q 007077 127 NSIMDMYGVLGKICNVKKLFDEMPDKDVV---SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL 203 (619)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 203 (619)
..|.+-..+.|++.+|++--...-..|.. ..-.+-..+.+..+.+.....-....+ ..+.-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHHHHHHh
Confidence 34455555677777777755544332211 111222344444455544433222222 2233445777788888888
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchh-HHHHHHHHHhcCCHHHHHHHHcc
Q 007077 204 KNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVIC-WTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
|+++.|...++.+++.-|.....|..+..++...|+.+.|.+.|.+..+ |+... .+.+...+-..|++++|...+-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 8888888888888888777888889999999999999999999988876 44443 33445556678999999888876
Q ss_pred CCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh
Q 007077 281 SPV--R-DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLGALEQGKWIHGYINENRITVDA 356 (619)
Q Consensus 281 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (619)
... | =.+.|+.|...+...|+...|+..|++..+ +.|+.. .|..|...+...+.++.|...+.+..... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 543 3 346899999999999999999999999987 566643 78889999999999999999998887764 4566
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSAC 432 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 432 (619)
.++..+...|..+|.++-|+..|++..+. -+..|+.|..++-..|+..+|...|.+.+.. .|+ ..+.+.+...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 77888888899999999999999998753 4679999999999999999999999999987 666 56899999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
...|.+++|..+|....+ +.|. ....+.|...|..+|++++|+..+++.. +-.+.....|+.+...|...|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999998874 4566 5678999999999999999999999987 3355556679999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
|.+.+.+++.+.|.-..++..|+.+|..+|+..+|+.-++...+...
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.1e-19 Score=191.67 Aligned_cols=253 Identities=15% Similarity=0.064 Sum_probs=208.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 299 FNRFDEAVALFREMQIIR-LKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999998765 3343 4467777788889999999999999998864 445668888999999999999999
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007077 377 EIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY 452 (619)
Q Consensus 377 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 452 (619)
..|+++.+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|...|+.....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99998764 36788999999999999999999999999987 565 457777888899999999999999998864
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NN-EII----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.+.+...++.+..++...|++++|++.|++.... +. .+. ...++..+..+...|++++|+..++++.+++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3445788999999999999999999999986622 21 111 0112222233445799999999999999999999
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..++..++.++...|++++|.+.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.7e-19 Score=178.36 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=196.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 344566666666666666666666666655432221 1345556666666677777777776666542 345566667
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREKD--------AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSAC 432 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 432 (619)
++..+.+.|++++|.+.++.+.+.+ ...+..++..+...|++++|...|+++.+. .|+ ..++..+...+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 7777777777777777777665321 113456777788899999999999998876 444 45777788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|.+.++++.... |+...+..++..+.+.|+++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHH
Confidence 9999999999999998764 343 4567888999999999999999999877321 22334688889999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHh---CCChHHHHHHHHHHHhCCCcccCce
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYAS---ANRWEDVTNVRQKMKEMGVRKVPGC 564 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 564 (619)
+|...++++.+..|++.. +..+...+.. .|+.+++..++++|.+.++++.|..
T Consensus 300 ~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 300 AAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 999999999999999886 5555555443 5699999999999999888888753
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.3e-18 Score=178.07 Aligned_cols=356 Identities=8% Similarity=-0.025 Sum_probs=214.1
Q ss_pred hcCChhHHHHHHccCCC------CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 135 VLGKICNVKKLFDEMPD------KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|..+++.... ..+-+...+..++.++...|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHH
Confidence 44555555555555543 1233455567777788888888888888765 122223344444455566778888
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhh
Q 007077 209 GKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVL 288 (619)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 288 (619)
|...++.+....|.++..+..+...+.+.|++++|...|++... ..+.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----------------------------l~P~~~~a 146 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL----------------------------AFSGNSQI 146 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------hCCCcHHH
Confidence 88888877777777777777777777777777777777766543 11223445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
+..++..+...|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.+....++......+...+..
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555556666666666666555443222111 11111 2345556666666666555544322233333344555666
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINK----ALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 440 (619)
.|++++|...|+++.. .+...+..+...+...|++++ |...|++..+. .|+ ..++..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666666666666543 245556666667777777664 67777777765 454 3466667777777777777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
|...++..... -+.+...+..+..+|.+.|++++|++.++++... .+.....+..+..++...|++++|...++++.
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777653 1223455666777777777777777777776622 11121223334556777777888888777777
Q ss_pred ccCCCCc
Q 007077 521 KIESKDS 527 (619)
Q Consensus 521 ~~~p~~~ 527 (619)
+..|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 7777654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.2e-17 Score=176.11 Aligned_cols=420 Identities=10% Similarity=-0.038 Sum_probs=281.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcC
Q 007077 91 YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKC 167 (619)
Q Consensus 91 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 167 (619)
+......+.+.|+++.|...|+..++ ..|+...|..+..+|.+.|++++|++.++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 33445566677777888887777766 345666777777777777888877777776654 2 334667777777788
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHh
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELF 247 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (619)
|++++|+..|.......+..+ .....++..... ..+........+..+.+...+..+.. |......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN--EQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 888888777766544111111 111111111110 11222222222222333222222222 22221222222212
Q ss_pred ccCCCCCc---hhHHHHHHH---HHhcCCHHHHHHHHccCCC------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 007077 248 DEMPNKNV---ICWTSMVSG---YVNCGQLEKARDLFDRSPV------RDIVLWTAMINGYVQFNRFDEAVALFREMQII 315 (619)
Q Consensus 248 ~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 315 (619)
....+-+. ..+..+... ....+++++|.+.|+.... .+...|+.+...+...|++++|+..|++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 21111111 111111111 1234678888888876542 24567888888999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHH
Q 007077 316 RLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWT 391 (619)
Q Consensus 316 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 391 (619)
.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +...+.
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 455 4477888888899999999999999998874 566788999999999999999999999988643 566788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-h-------HHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-E-------HYG 462 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~ 462 (619)
.+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|...|+..... .|+. . .++
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHH
Confidence 8889999999999999999999876 555 568888889999999999999999998753 3321 1 122
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.....+...|++++|.+++++.... ++.+...+..+...+...|++++|.+.|+++.++.+....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l-~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII-DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 2223344579999999999987632 3445556889999999999999999999999988876444
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.6e-17 Score=165.25 Aligned_cols=522 Identities=11% Similarity=0.036 Sum_probs=375.3
Q ss_pred HHHHHhccCCCCChhHHHHhhccC----C--CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 007077 25 KLMVFCTHPSHGNLLYAEKIFGSI----Q--SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV 98 (619)
Q Consensus 25 ~l~~~~~~~~~g~~~~a~~~~~~~----~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (619)
.|-.++.....|++..|+.+|... | +||+.. .+-.++.+.|+.+.|+..|.+..+.+. -++.++..|...-
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 334444333578888888888763 1 344432 233566688888888888888887532 1222232222222
Q ss_pred hcc---CChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCC------eecHHHHHHHHHcCCC
Q 007077 99 GWL---GEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKD------VVSWNVSISGHVKCMR 169 (619)
Q Consensus 99 ~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 169 (619)
... ..+..+..++....... ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|+
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 222 23445555555555433 2567788889999999999999999888776432 2357778899999999
Q ss_pred hhHHHHHHHHhHhcCCCCCChh--hHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----ChhhH
Q 007077 170 FEDAVDVFRRMRQGCNLMPDEG--TVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCG----CLSEA 243 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A 243 (619)
+++|...|..-.+ ..||.+ .+..+...+...|+++.+...|+.+.+..|.+..+...|...|...+ ..+.|
T Consensus 323 ~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 323 FEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999988754 455554 34456777899999999999999999999999999999999998875 56778
Q ss_pred HHHhccCCCC---CchhHHHHHHHHHhcCCH------HHHHHHHc-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 244 RELFDEMPNK---NVICWTSMVSGYVNCGQL------EKARDLFD-RSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 244 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~------~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
..++.+..++ |...|-.+...+....-+ ..|..++. .+....+...|.+...+...|++.+|...|....
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 8888777763 555666666666544433 33443332 2334567889999999999999999999999886
Q ss_pred Hc---CCCCCH------HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 007077 314 II---RLKPDK------FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE 384 (619)
Q Consensus 314 ~~---g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 384 (619)
.. ...+|. .+--.+....-..++.+.|.+.|..+.+.. |.-+..|-.+..+....+...+|...++....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 54 223333 223345556677889999999999998863 33334444444444455778889999988764
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHh
Q 007077 385 ---KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSH------------GGLVDEGRRFFNTM 448 (619)
Q Consensus 385 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~ 448 (619)
.++..|..+...+.....+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 478888888889999999999999888776542 23677777777775542 34577888898888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCC
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE--SKD 526 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~ 526 (619)
.+ .-+.|...-|-+.-+++..|++.+|..+|.++..... ....+|-.+..+|...|++..|+++|+...+.. .++
T Consensus 639 L~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 639 LR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred Hh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 76 3456677788899999999999999999998874322 112239999999999999999999999986543 457
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+.+..+|+.++.+.|++.+|.+.+.......
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7888999999999999999999998877543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.2e-17 Score=177.34 Aligned_cols=410 Identities=10% Similarity=-0.023 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHH
Q 007077 87 DNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISG 163 (619)
Q Consensus 87 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 163 (619)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++..+ .+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334444555566777777777777766522 23344566677777777777777777776432 234456666667
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH
Q 007077 164 HVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA 243 (619)
Q Consensus 164 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (619)
+...|++++|+..+++..+ . .+.+.. +..+..++...|+.+.|...++.+.+..|.+...+..+..++.+.|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~-~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVS-G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHH-h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777777655 1 222333 555555666667777777777777776666666666666666666666666
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHH-----HHcCCh---hHHHHHHHHHHHc
Q 007077 244 RELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGY-----VQFNRF---DEAVALFREMQII 315 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~ 315 (619)
++.++.... +.. +..-+ . ......++... ...+++ ++|++.++.+.+.
T Consensus 170 l~~l~~~~~-~p~-~~~~l-------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 170 LGAIDDANL-TPA-EKRDL-------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHHHhCCC-CHH-HHHHH-------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666665543 110 00000 0 00001111111 111223 5666666666643
Q ss_pred -CCCCCHH-HHH----HHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--
Q 007077 316 -RLKPDKF-ILV----ALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATALIEMYAKCGLIEKALEIFYELREKD-- 386 (619)
Q Consensus 316 -g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 386 (619)
...|+.. .+. ..+..+...|+.++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1222221 111 1122334556666666666666655421 11 111223455666666666666666554321
Q ss_pred -----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 387 -----AASWTSIICGLAMNGKINKALELFSQMISGGA-----------KPDD---ITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 387 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
......+..++...|++++|.+.++++..... .|+. ..+..+...+...|+.++|++.+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12234444555666666666666666655410 1111 1222333444444555555555555
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
+... .+.+...+..++..+...|++++|++.+++.... .|.+...+...+..+...|++++|+.+++.+.+..|+++
T Consensus 385 al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 385 LAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 4432 2223444444455555555555555555544421 122222333444444445555555555555555555554
Q ss_pred c
Q 007077 528 S 528 (619)
Q Consensus 528 ~ 528 (619)
.
T Consensus 462 ~ 462 (765)
T PRK10049 462 G 462 (765)
T ss_pred H
Confidence 3
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=9.8e-18 Score=180.00 Aligned_cols=394 Identities=8% Similarity=0.011 Sum_probs=249.0
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
..-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+ --+.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 33444445555666666665555442 1222355555555566666666666655543 112223333344444455
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP 282 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (619)
.|+.++|...++.+.+..|.+.. +..+..++...|+.++|...++++.+ ..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------------~~ 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------------RA 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------hC
Confidence 55555555555555555444444 55555555555555555555544433 11
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHH-----HccCcH---HHHHHHHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK------FILVALLTGC-----AQLGAL---EQGKWIHGYIN 348 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~ 348 (619)
+.+...+..+...+...+..++|+..++.... .|+. .....++... ...+++ +.|...++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 22344445555556666666666666654432 2221 0011111111 112233 67777888877
Q ss_pred Hc-CCCCChh-HH-HH---HHHHHHhCCCHHHHHHHHHhcCCCC---hh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007077 349 EN-RITVDAV-VA-TA---LIEMYAKCGLIEKALEIFYELREKD---AA-SWTSIICGLAMNGKINKALELFSQMISGGA 418 (619)
Q Consensus 349 ~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 418 (619)
+. ...|+.. .+ .. .+.++...|++++|+..|+++.+.+ +. .-..+...|...|++++|+..|+++.+.
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-- 301 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH-- 301 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--
Confidence 54 2222221 11 11 1234567799999999999988643 11 1223577899999999999999998875
Q ss_pred CCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 007077 419 KPD-----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ----------IQPK---LEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 419 ~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
.|. ......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 332 23456666788999999999999999886411 1122 23456678889999999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++++.. ..|.+...+..++..+...|++++|++.++++.+++|+++.++..++..+...|++++|..+++++.+.
T Consensus 382 l~~al~-~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAY-NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999873 244456679999999999999999999999999999999999999999999999999999999999764
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.8e-18 Score=173.36 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC--------hhhHHHHHHH
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD--------IVLWTAMING 295 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~ 295 (619)
+..++..|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+ ...+..++..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34455555555555555555555443 122233333333333444444433333322110 0122334444
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|.+.|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 445555555555555544422 1122233444444444555555555554444432111123344444445555555555
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHH
Q 007077 376 LEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH---GGLVDEGRRFFNTMTE 450 (619)
Q Consensus 376 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 450 (619)
...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+
T Consensus 269 ~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 269 LEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 554444432 23333344444455555555555555544443 4444444444443332 2344445555544444
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8e-17 Score=161.78 Aligned_cols=509 Identities=12% Similarity=0.034 Sum_probs=340.6
Q ss_pred hhHHHHhhccCC---CCCcccHHHHHHHHH--hcCChhHHHHHHHHhHHCC--CCCCcccHHHHHHHHhccCChhHHHHH
Q 007077 38 LLYAEKIFGSIQ---SPCLLAYNLLIKAFA--KKGSFRKSLLLFSKLRERG--VSPDNFTYPFVFKAVGWLGEVKKGEKV 110 (619)
Q Consensus 38 ~~~a~~~~~~~~---~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 110 (619)
++.|...|.... ++|+-. .+..++. ..|++..|+.+|....... .+||. ...+-.++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHH
Confidence 467777776553 233332 3334433 5678899999998866542 33443 22333455688888889888
Q ss_pred HHHHHHhCCCCCh-hhHHHHHHHhHh---cCChhHHHHHHccCC---CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 111 HGYVVKTGLEFDT-YVCNSIMDMYGV---LGKICNVKKLFDEMP---DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 111 ~~~~~~~g~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
|.+..+.. |+. .++-.|...-.. ...+..+..++...- ..|++..+.|...|.-.|++..++.+...+...
T Consensus 222 ~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 88888733 322 222222111111 223445555555443 257788888888888899999999988888661
Q ss_pred CCCC-CChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-hhHHHHHHHHHHhcCChhhHHHHhccCCC--C-CchhH
Q 007077 184 CNLM-PDEGTVVSTLSACTALKNLELGKEIHRYINQELEFT-PIMGNALLDMYCKCGCLSEARELFDEMPN--K-NVICW 258 (619)
Q Consensus 184 ~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 258 (619)
.... .-...|-.+.+++-..|+++.|...+-...+..+.+ ...+-.+..+|.+.|+++.+...|+.+.+ | +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 1111 112346667788888899999998888877774444 55567788889999999999988888875 3 44456
Q ss_pred HHHHHHHHhcC----CHHHHHHHHccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHH----HHcCCCCCHHHHHHH
Q 007077 259 TSMVSGYVNCG----QLEKARDLFDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREM----QIIRLKPDKFILVAL 327 (619)
Q Consensus 259 ~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~l 327 (619)
..+...|...+ ..+.|..++.+...+ |...|-.+...+-... ...++..|... ...+-.+.....+.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 66666666554 566777777665533 5666666666555444 44447666654 344555677788888
Q ss_pred HHHHHccCcHHHHHHHHHHHHHc---CCCCCh------hHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHHH
Q 007077 328 LTGCAQLGALEQGKWIHGYINEN---RITVDA------VVATALIEMYAKCGLIEKALEIFYELREKDA---ASWTSIIC 395 (619)
Q Consensus 328 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~ 395 (619)
.......|+++.|...|...... ...++. .+--.+..++-..++.+.|.+.|..+.+..+ ..|--++.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 88888899999998888877654 112222 2333466677777888899999988876433 33444443
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH------
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG------ 469 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~------ 469 (619)
.....+...+|...+....... ..+...+..+...+.....+..|..-|+...+.....+|..+.-+|...|.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334577888888888877642 333344444555677777777787766666655344466666666666554
Q ss_pred ------hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 470 ------RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 470 ------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
..+..++|+++|.++. ..+|-+...-|.+.-.++..|++.+|..+|.++.+-..+.+.+|..++++|..+|+|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 2356788999998887 346666655677777788999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
-.|+++|+...+
T Consensus 697 ~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 697 RLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.5e-17 Score=171.92 Aligned_cols=356 Identities=10% Similarity=0.014 Sum_probs=265.4
Q ss_pred HcCCChhHHHHHHHHhHhcC-CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH
Q 007077 165 VKCMRFEDAVDVFRRMRQGC-NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA 243 (619)
Q Consensus 165 ~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (619)
.+..+|+.-.-+|..-.+.. .-.-+......++..+.+.|+.+.|..+++.+....|.+......++......|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 34455555544444432200 01112223444555566667777777777766666666666666666666666666666
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HH
Q 007077 244 RELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KF 322 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 322 (619)
...|+++.+ ..+.+...+..+...+...|++++|+..|+++... .|+ ..
T Consensus 96 ~~~l~~~l~----------------------------~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~ 145 (656)
T PRK15174 96 LQVVNKLLA----------------------------VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQ 145 (656)
T ss_pred HHHHHHHHH----------------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence 665555432 12335667888889999999999999999999874 454 55
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----ChhhHHHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK----DAASWTSIICGLA 398 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~ 398 (619)
.+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 77888899999999999999999887664 2333444333 3478899999999999987653 2334455677889
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDE----GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
..|++++|+..++++.+. .|+ ...+..+...+...|++++ |...|+..... .+.+...+..+...+.+.|+
T Consensus 224 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 224 AVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999987 455 5577788889999999986 89999998863 23447789999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+++|+..+++.... .+.+...+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|...+++.
T Consensus 300 ~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988732 44455568888999999999999999999999999998877777889999999999999999998
Q ss_pred HhCC
Q 007077 554 KEMG 557 (619)
Q Consensus 554 ~~~~ 557 (619)
.+..
T Consensus 379 l~~~ 382 (656)
T PRK15174 379 IQAR 382 (656)
T ss_pred HHhC
Confidence 7643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.4e-15 Score=160.02 Aligned_cols=425 Identities=11% Similarity=0.003 Sum_probs=224.6
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHH-H--HHHHHcCCChhHH
Q 007077 97 AVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNV-S--ISGHVKCMRFEDA 173 (619)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 173 (619)
...+.|++..|...++++.+........++ .++..+...|+.++|+..+++...|+...+.. + ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345778888888888888774422112233 67777777788888888888877664443333 3 3456667888888
Q ss_pred HHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-
Q 007077 174 VDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN- 252 (619)
Q Consensus 174 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 252 (619)
+++|+.+.+ ..+-++..+..++..+...++.++|...++.+.+..+. ...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~--~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLK--KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHh--hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888865 12223344455556667777777777777777665443 22234444444445555557777777765
Q ss_pred -C-CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChhhHHH----HHHHHHHc---------CC---hhHHHHHHHHHH
Q 007077 253 -K-NVICWTSMVSGYVNCGQLEKARDLFDRSPVR-DIVLWTA----MINGYVQF---------NR---FDEAVALFREMQ 313 (619)
Q Consensus 253 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~---------g~---~~~A~~~~~~m~ 313 (619)
| +...+..+...+.+.|-...|.++...-+.- +...+.- .+.-..+. .+ .+.|+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 3445566667777777777777766654411 1111100 01111111 11 122333333333
Q ss_pred Hc-CCCCCH-HH----HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--
Q 007077 314 II-RLKPDK-FI----LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-- 385 (619)
Q Consensus 314 ~~-g~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 385 (619)
.. +-.|.. .. ..--+-++...++..+++..++.+...+.+....+-.++.++|...+++++|+.+|.++...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 111211 11 11223344555666666666666665554444445555666666666666666666655321
Q ss_pred -------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHhccCcHHHHHHH
Q 007077 386 -------DAASWTSIICGLAMNGKINKALELFSQMISGGA-----------KP--DDI-TFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 386 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-~~~~ll~~~~~~g~~~~a~~~ 444 (619)
+......|..+|...+++++|..+++++.+.-. .| |-. .+..++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111234455556666666666666666655210 11 111 222333444555556666666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++.+.. .-+-|......+.+.+...|.+.+|++.++..... ++.+..+....+.+....|++.+|..+.+.+.+..|
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 555543 22334555555555555556666666555444321 333333344455555555556666555555555555
Q ss_pred CCcc
Q 007077 525 KDSS 528 (619)
Q Consensus 525 ~~~~ 528 (619)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 5554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3.4e-15 Score=157.18 Aligned_cols=420 Identities=11% Similarity=0.032 Sum_probs=295.1
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCcc-cHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChh
Q 007077 62 AFAKKGSFRKSLLLFSKLRERGVSPDNF-TYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKIC 140 (619)
Q Consensus 62 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 140 (619)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...+++... .-.........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 456788888888888888765 34431 222666777777888888888887772 11111222233345677778888
Q ss_pred HHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 007077 141 NVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYIN 217 (619)
Q Consensus 141 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (619)
+|.++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++...|...++.+.
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888764 2 344566667777888888888888888744 45565555444444444555555888888888
Q ss_pred HhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHH----HHHHH---------hcC---CHHHHHHHHcc
Q 007077 218 QELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSM----VSGYV---------NCG---QLEKARDLFDR 280 (619)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l----i~~~~---------~~g---~~~~A~~~~~~ 280 (619)
+..|.+...+..+.....+.|-...|.++..+-+.- +...+..+ +.-.. ... -.+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 888888888888888888888888888877765530 11111000 00011 111 12334444443
Q ss_pred CCC-----CCh-----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 281 SPV-----RDI-----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 281 ~~~-----~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
+.. |.. .+.--.+-++...|++.++++.|+.|...|.+....+-..+.++|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 321 211 1222355678889999999999999999887756678889999999999999999999999765
Q ss_pred C-----CCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh------------------hhHHHHHHHHHhCCChHHHH
Q 007077 351 R-----ITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA------------------ASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 351 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~ 407 (619)
. .+++......|.-+|...+++++|..+++++.+..+ ..+..++..+...|+..+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 233444467899999999999999999999875211 23445678889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 408 ELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 408 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+.++++... .|. ..........+...|.+.+|.+.++.... ..|+ ..+....+..+...|++.+|..+.+.+.
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999877 554 56788888999999999999999977664 3455 6677788889999999999999998776
Q ss_pred C-CCCccc
Q 007077 486 N-ENNEII 492 (619)
Q Consensus 486 ~-~~~~~~ 492 (619)
. .|+.+.
T Consensus 512 ~~~Pe~~~ 519 (822)
T PRK14574 512 SRSPEDIP 519 (822)
T ss_pred hhCCCchh
Confidence 2 344444
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=4.1e-14 Score=129.60 Aligned_cols=414 Identities=10% Similarity=0.072 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHH-HHhhccC-----------------------CCCCcccHHHH
Q 007077 4 LKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYA-EKIFGSI-----------------------QSPCLLAYNLL 59 (619)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a-~~~~~~~-----------------------~~~~~~~~~~l 59 (619)
+.-+|..|-+-|.+.++.+--.|+...++-...++..| ++.|-.| .+++..+|..|
T Consensus 134 s~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~m 213 (625)
T KOG4422|consen 134 SCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIM 213 (625)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHH
Confidence 44577888888888887776666654432122222222 2223222 34556677777
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
|.++++--..++|.++|++......+.+..+||.+|.+..- ....++..+|....+.||..|+|+++.+.++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 77777777777777777777766666777777777766432 23366777777777777777777777777777776
Q ss_pred hHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH-HHHHHHHHHH
Q 007077 140 CNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL-GKEIHRYINQ 218 (619)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~ 218 (619)
+.|.+ .|++++.+|++ .|+.|.-.+|..+|..+.+-++..+ +..+...+..
T Consensus 290 ~~ar~---------------------------aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 290 EDARK---------------------------AALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHH---------------------------HHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 66543 35667777877 7888888888888877776666544 3333333332
Q ss_pred h---------ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChh
Q 007077 219 E---------LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPV--RDIV 287 (619)
Q Consensus 219 ~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 287 (619)
. .|.+...+..-++.+.+..+.+-|.++-.-....+.. ..+.. ....
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~----------------------~~ig~~~~~~f 399 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW----------------------KFIGPDQHRNF 399 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----------------------hhcChHHHHHH
Confidence 1 2234445556666666666766666654433221100 00000 0112
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..+...|..........++..++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 34445555666666666666676666655666666666667766666666666666666666553333332222222222
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREKDAASWTSIICGLA--MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+..- .++...-..+-...+ ...-.+.....-.+|.+..+. ....+.++..+.+.|..++|.+++
T Consensus 480 ~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 480 RDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred cCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHH
Confidence 2210 111111011111100 001111112222334433222 233444444555666666666666
Q ss_pred HHhHHhcCCCCChhHHH---HHHHHHHhcCCHHHHHHHHhhCC
Q 007077 446 NTMTEVYQIQPKLEHYG---CLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..+.+.+.-.|-....+ -+++.-.+..+.-.|...++-|.
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66644433333333333 33444455566666666666664
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1.3e-12 Score=126.09 Aligned_cols=455 Identities=11% Similarity=0.082 Sum_probs=309.5
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--------CCeecHHHHHHHHHcCCC
Q 007077 98 VGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--------KDVVSWNVSISGHVKCMR 169 (619)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~ 169 (619)
+++...++.|..++....+ .++-+..+|-+-...--..|+.+...+++++-.. -+...|-.=...+-+.|.
T Consensus 416 larLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 3334444455555554444 2334444444444444445555555554443221 122233333444444455
Q ss_pred hhHHHHHHHHhHhcCCCCCC--hhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHh
Q 007077 170 FEDAVDVFRRMRQGCNLMPD--EGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELF 247 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (619)
.-.+..+...... .|+.-. ..||..-...|.+.+..+-++.++..+++-+|.+...|......--..|..++-..+|
T Consensus 495 v~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555555555443 333222 2356666666777777777777887777777777777777777777777777777777
Q ss_pred ccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 007077 248 DEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 248 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 321 (619)
++... +....|-.....+-..|++..|..++.... +.+...|-+-+..-..+.+++.|..+|.+... ..|+.
T Consensus 574 qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 77654 344556666667777788888887776543 33556777777777788888888888887765 45555
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLA 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 398 (619)
..|..-+..---.++.++|.++++..++. ++.-...|..+...+-+.++++.|.+.|..-.+. .+..|-.|...--
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 55555555555667788888888777765 3555667777788888888888888887765532 5667777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
+.|+.-.|..++++..-. .|+ ...|...++.-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-..+
T Consensus 731 k~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHH
Confidence 888888888888887766 444 55777778888888888888888777776 4455667777777777777777777
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.+.+++.. +++.. ..++...+....+++.|.+-|.++.+.+|++..+|..+-..+.+.|.-++-.+++.+....
T Consensus 807 ~DALkkce--~dphV---llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~- 880 (913)
T KOG0495|consen 807 IDALKKCE--HDPHV---LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA- 880 (913)
T ss_pred HHHHHhcc--CCchh---HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence 77776664 23333 6777788888999999999999999999999999999999999999999999999988764
Q ss_pred CcccCceeEEE
Q 007077 558 VRKVPGCSSIE 568 (619)
Q Consensus 558 ~~~~~~~~~~~ 568 (619)
.|..|..|+.
T Consensus 881 -EP~hG~~W~a 890 (913)
T KOG0495|consen 881 -EPTHGELWQA 890 (913)
T ss_pred -CCCCCcHHHH
Confidence 3445555643
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=7.1e-13 Score=133.00 Aligned_cols=528 Identities=11% Similarity=0.092 Sum_probs=309.5
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhc---cCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFG---SIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKL 79 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 79 (619)
+|..+...+++.. |..+..|..|...|- ..|+.+++...+- .+.+.|..-|-.+-....+.|+++.|.-.|.+.
T Consensus 157 eA~~i~~EvIkqd-p~~~~ay~tL~~IyE--qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 157 EAEEILMEVIKQD-PRNPIAYYTLGEIYE--QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHhC-ccchhhHHHHHHHHH--HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444555555433 334455555555555 5566665555442 334455555555555555666666666666665
Q ss_pred HHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHH----HHHHHhHhcCChhHHHHHHccCCC----
Q 007077 80 RERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCN----SIMDMYGVLGKICNVKKLFDEMPD---- 151 (619)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~---- 151 (619)
++.. |++...+---...|-+.|+...|...|.++.....+.|..-.. ..+..+...++-+.|.+.++....
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 5542 2333333333444555666666666666665543322222222 223334444555666665555443
Q ss_pred -CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhH--------------------------HHHHHHhhcCC
Q 007077 152 -KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTV--------------------------VSTLSACTALK 204 (619)
Q Consensus 152 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--------------------------~~ll~~~~~~~ 204 (619)
-+...++.++..+.+...++.|......+.. ....+|..-+ .-+.-+....+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 1334567777777777777777777776654 2222222111 11222234555
Q ss_pred ChHHHHHHHHHHHHh---ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 007077 205 NLELGKEIHRYINQE---LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDL 277 (619)
Q Consensus 205 ~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 277 (619)
..+....+...+... ...++..+.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|..+.|...
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 566666666665555 334566788888999999999999999988876 3566888999999999999999999
Q ss_pred HccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 278 FDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQ--------IIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 278 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
|+..... +...--.|...+.+.|++++|.+.+..+. ..+..|+..........+.+.|+.++-..+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9876533 33444456667888999999999998853 223445555555566667777777764444433
Q ss_pred HHHcC----------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHhc--------CCCChh----hHHH
Q 007077 347 INENR----------------------ITVDAVVATALIEMYAKCGLIEKALEIFYEL--------REKDAA----SWTS 392 (619)
Q Consensus 347 ~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~ 392 (619)
++... .+........++.+-.+.++......-...- ..-... .+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 33211 1112222233344444443322222211111 011222 2345
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 007077 393 IICGLAMNGKINKALELFSQMISGGA--KPDD---ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCL 464 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 464 (619)
++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.+...++...+ ...|++.
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788999999999999998877542 2222 12234456677889999999999999876544433 3466666
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-CCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIP-NEN--NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
...+.+.|+-.-=.+++.... ..+ .++- ......-....+.+..|...+-++....|++|.+-.+++-++.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l---~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPL---ALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcce---eeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666665444444444433 221 1222 2222333456788999999999999999999988777776654
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.7e-12 Score=125.37 Aligned_cols=482 Identities=14% Similarity=0.089 Sum_probs=384.4
Q ss_pred ChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 37 NLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 37 ~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.++|+-++.+.. +.+...| -++.+..-|+.|..++...++. +|.+...|.+....--..|+.+...++.++
T Consensus 391 ~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344555555432 2333333 3566777889999999998876 777888898888877889999998888776
Q ss_pred HH----HhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC------CCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 114 VV----KTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD------KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 114 ~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
-+ ..|+..+...|-.=...|-+.|..-.+..+...... .--.+|..-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 44 467777777777777777777887777777665542 2235899999999999999999999999876
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHH
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTS 260 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 260 (619)
-.+.+...|......-...|..+.-..++..++...|.....+.....-+-..|++..|..++...-+ .+...|-.
T Consensus 545 -vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 545 -VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred -hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34556667777777777889999999999999999999999999999999999999999999988765 35567888
Q ss_pred HHHHHHhcCCHHHHHHHHccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcH
Q 007077 261 MVSGYVNCGQLEKARDLFDRSP--VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLGAL 337 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 337 (619)
-+........++.|..+|.+.. .+....|.--+..-.-.+..++|++++++..+ .-|+.. .|..+.+.+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHH
Confidence 9999999999999999997654 55677787777777778999999999999887 467665 677778888899999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+.|...|..=.+. +|..+..|-.|...-.+.|.+-.|..+|++..- .+...|-..|..-.+.|+.+.|..+..+.+
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888665443 466778899999999999999999999998763 377899999999999999999999999988
Q ss_pred HCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccH
Q 007077 415 SGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIV 493 (619)
Q Consensus 415 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 493 (619)
+. -|+ ...|..-|...-+.++-..+...+. ...-|+++...+...+-...++++|.+.|.+... -++...
T Consensus 781 Qe--cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk-~d~d~G 851 (913)
T KOG0495|consen 781 QE--CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK-KDPDNG 851 (913)
T ss_pred Hh--CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCccc
Confidence 87 444 4566666666666666444444332 3456777888889999999999999999999883 355556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
.+|.-+...+..+|.-+.-.+++.+...-+|.....|.....--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 67999999999999999999999999999999988887766543
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=5e-13 Score=122.64 Aligned_cols=446 Identities=14% Similarity=0.146 Sum_probs=244.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc--cCChhHH-HHHHHHHHHhCCCCChhhHHH
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW--LGEVKKG-EKVHGYVVKTGLEFDTYVCNS 128 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 128 (619)
.+++=|.|+. +..+|....+.-+|+.|...|++.+...-..+++..+- ..++.-+ ++-|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3455666664 45667888999999999999887776655555554332 2222221 2333344443322 22222
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
+.|++.+ ++-+...+...+|..||.++++--..+.|.++|++-.. ...+.+..+|+.+|.+-.-. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----c
Confidence 4455444 44444556778999999999999999999999999988 67888999999999875433 2
Q ss_pred HHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHc-cCCCCCh
Q 007077 209 GKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFD-RSPVRDI 286 (619)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~ 286 (619)
.+++...|... ..||..++|+++.+..+.|+++.|.+.+-++. .-+. -...|..
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil------------------------~EmKeiGVePsL 312 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL------------------------GEMKEIGVEPSL 312 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH------------------------HHHHHhCCCcch
Confidence 37777888877 99999999999999999998887765332210 0011 1225555
Q ss_pred hhHHHHHHHHHHcCChhH-HHHHHHHHHHc----C---CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC----CC
Q 007077 287 VLWTAMINGYVQFNRFDE-AVALFREMQII----R---LKP-DKFILVALLTGCAQLGALEQGKWIHGYINENR----IT 353 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~ 353 (619)
.+|..+|..+++-++..+ |..++.+.+.. . +.| |...|...+..|.+..+.+.|.+++..+.... +.
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 666666666666655533 34444443321 1 222 33456666777777777777777666554321 11
Q ss_pred CC---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007077 354 VD---AVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFI 426 (619)
Q Consensus 354 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 426 (619)
|+ ..-|..+..+.|.....+.-...|+.|.. ++..+...++.+....|.++-.-+++..++..|..-+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 21 12234455555555555555555555543 244444445555555555655556666655555333333222
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHH-HHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA-GLLDEAEE-LIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
-++..+++.. ..|+...-..+-....++ -++.++.+ --.++....-++ ...+..+-.+.
T Consensus 473 eil~~L~~~k-----------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 473 EILMLLARDK-----------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLL 533 (625)
T ss_pred HHHHHHhcCC-----------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHH
Confidence 2222222211 111111000111111100 01111111 111222222222 23555555666
Q ss_pred HcCCHHHHHHHHHHHhcc---CCCCcch--HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 505 IYGNVDMGEKLAALLEKI---ESKDSSF--HTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~---~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.|..++|-+++...... -|..+.. ...+.+.-........|..+++-|...+.
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 777777777776666322 2444331 22344444555667777777777765544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.1e-13 Score=125.86 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=160.6
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHH
Q 007077 332 AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
...|++++|.+.+++.+...-......|| +.-.+...|++++|+..|-++. ..+......+.+.|-...++..|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34577777777777776654222222333 4445778899999999988765 4577788888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 409 LFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
++-+.... ++.|+..+..+...|-+.|+-.+|.+.+-.--+ -++-+.++...|...|....-+++|+.+|++.. -
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 99877655 344567888889999999999999988765443 456678899999999999999999999999875 2
Q ss_pred CcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 489 NEIIVPLYGALLSAC-RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..|+..-|..++..| .+.|++.+|..+|+......|.+.....-|+.+....|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 445555698887765 568999999999999999999999988888888877774
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.3e-12 Score=119.83 Aligned_cols=493 Identities=12% Similarity=0.078 Sum_probs=357.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 007077 53 LLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM 132 (619)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 132 (619)
...|-.....=..++++..|..+|++.+... .-+...|.-.+..-.+...+..|..++++.+..-...| ..|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3344444444455678889999999998765 33666677788888899999999999999987443333 344555566
Q ss_pred hHhcCChhHHHHHHccCC--CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHH
Q 007077 133 YGVLGKICNVKKLFDEMP--DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGK 210 (619)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 210 (619)
--..|++..|.++|+... +|+..+|.+.|..=.+...++.|..+|++..- +.|+..+|.-....-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 667899999999999876 59999999999999999999999999999854 6699999999999889999999999
Q ss_pred HHHHHHHHhccC---ChhHHHHHHHHHHhcCChhhHHHHhccCCC--C---CchhHHHHHHHHHhcCCH---HHHHHHHc
Q 007077 211 EIHRYINQELEF---TPIMGNALLDMYCKCGCLSEARELFDEMPN--K---NVICWTSMVSGYVNCGQL---EKARDLFD 279 (619)
Q Consensus 211 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~---~~A~~~~~ 279 (619)
.+++.+++.+.. +...+.+....-.++..++.|.-+|.-..+ | ....|..+..-=-+-|+. +++.--=+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999999887443 345667777777788889999988865544 2 233344444333344554 44432222
Q ss_pred -----cCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCcHHHHH
Q 007077 280 -----RSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-------ILVALLTGC---AQLGALEQGK 341 (619)
Q Consensus 280 -----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~ 341 (619)
..... |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222 5567777777777889999999999998864 555321 122111122 3567899999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHH----HhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 342 WIHGYINENRITVDAVVATALIEMY----AKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
++++..++. +|....++.-+--+| .++.++..|.+++..... |-..+|...|..-.+.++++.+..+|++.++
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999883 455556665544444 578899999999998763 5667888888888999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 416 GGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 416 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
.+ +-+..+|......-...|+.+.|..+|+-.+....+......|.+.|+.-...|.+++|..+++++...... ...
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kv 542 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKV 542 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chH
Confidence 84 335678888888888899999999999999876444445667888888888999999999999998843221 223
Q ss_pred HHHHHHHHH-----HcC-----------CHHHHHHHHHHHh----ccCCCCcc--hHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 496 YGALLSACR-----IYG-----------NVDMGEKLAALLE----KIESKDSS--FHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 496 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~----~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
|-++..--. +.| +...|..+|+++. +.+|.... ....+-+.-...|...+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 777665433 334 6778899998884 34443332 1223333444557777777777777
Q ss_pred Hh
Q 007077 554 KE 555 (619)
Q Consensus 554 ~~ 555 (619)
++
T Consensus 623 Pk 624 (677)
T KOG1915|consen 623 PK 624 (677)
T ss_pred cH
Confidence 63
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.6e-13 Score=136.04 Aligned_cols=332 Identities=15% Similarity=0.124 Sum_probs=210.9
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhcc---CCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 202 ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDE---MPNKNVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
..|+.+.|..++..+++..|.++..|..|...|-..|+.+++...+-. +...|..-|..+.....+.|.+++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 347888888888888877777777788888888888877777665432 22345556666666666677777776666
Q ss_pred ccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 007077 279 DRSPV---RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD 355 (619)
Q Consensus 279 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (619)
.+..+ ++...+---+..|-+.|+...|+..|.++.+...+.|..-+-.++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------------
Confidence 65442 233333344555666677777777766666543211111111111
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--------------
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISG-------------- 416 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------------- 416 (619)
...++.|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+...
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1123333333444444444444332 12334455555555555555555555554441
Q ss_pred -------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 417 -------------GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 417 -------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++.++... ..+.-++.+....+....+....... .+.| +...|.-+.++|...|++.+|+.+|
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11222222 11112223333344444444444443 5333 4778999999999999999999999
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 482 RKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
..+...+...+...|--+..+|...|.+++|.+.|+++....|++..+...|+.+|.+.|+.++|.+.+..+...+....
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99987666666667999999999999999999999999999999999999999999999999999999999874443333
Q ss_pred CceeE
Q 007077 562 PGCSS 566 (619)
Q Consensus 562 ~~~~~ 566 (619)
+++.|
T Consensus 518 e~~a~ 522 (895)
T KOG2076|consen 518 EACAW 522 (895)
T ss_pred hhccc
Confidence 44444
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=9e-13 Score=123.10 Aligned_cols=217 Identities=14% Similarity=0.085 Sum_probs=176.3
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
-.|+.-.+.+-++..++....+ ...|--+..+|....+.++-...|+...+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4578888888888888875333 33366677789999999999999998764 4788899888888899999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC
Q 007077 410 FSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NE 487 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 487 (619)
|++.+.. .|.. ..|..+..+..+.+.++++...|+..+++ ++.-++.|+.....+...+++++|.+.|+... .+
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999987 6654 47777777778899999999999999884 45568899999999999999999999998766 22
Q ss_pred CC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 488 NN------EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 488 ~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+. .+.+.+-.+++-.-.+ +++..|+.+++++.+++|....+|..|+......|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2222223334433334 9999999999999999999999999999999999999999999998653
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=8.7e-16 Score=145.52 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=112.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV-ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
.+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34666778888888888886654443245444443 34445566788888888888888765 3356667777777 688
Q ss_pred CCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 370 GLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 370 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
+++++|.++++..-+ +++..+..++..+.+.++++++.++++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998887643 466778888889999999999999999987643 23456677788888999999999999999
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 447 TMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 447 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+..+. .| |......++..+...|+.+++.++++..... .+.+...|..+..++...|++++|...++++.+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99875 45 4778889999999999999988888776532 1223334889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 526 DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|+.....+++++...|+.++|.+++++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988764
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=9.1e-14 Score=135.03 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=188.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 300 NRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR--ITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=...---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567788888774432 33344566777788888888888888888877643 11245566666544332111111111
Q ss_pred HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 378 IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
-+-.+....+.+|.++.++|..+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+... + .
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--V 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--C
Confidence 111222346788888888888888888888888888876 66 35677777777777788888888887765 2 3
Q ss_pred ChhHHH---HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 007077 457 KLEHYG---CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 457 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
|+.+|+ -+.-.|.+.++++.|+-.|+++.. -+|.+..+...+...+.+.|+.++|+++++++..++|.++..-...
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc-CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 444444 456678888888888888888873 3555666677777778888888888888888888888888888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhccc
Q 007077 534 ANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQN 606 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (619)
+.++...+++++|++.++++++ .-|+-..++..+.++++++...+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccchHH
Confidence 8888888888888888888876 2455566677777777766554433
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-11 Score=114.25 Aligned_cols=364 Identities=12% Similarity=0.047 Sum_probs=264.0
Q ss_pred ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH-HHHHHHHHH
Q 007077 220 LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW-TAMINGYVQ 298 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~ 298 (619)
...|+..+-...-.+-+.|....|...|......-+..|.+-+....-..+.+.+..+....+..+...- -.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555555556677788888888888877665555555555444444455554444433333222111 123456666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhCCCHHHHH
Q 007077 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRI--TVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
..+.++++.-.......|.+-+...-+....+.....++++|+.+|+.+.+... -.|..+|+.++-.-..+.++.--.
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 678889999888888888777766666666677788999999999999998731 125567776663322222222211
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 377 EIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
.....+.+-.+.|+.++.+-|.-.++.++|...|++.++. .|.. ..|+.+..-|....+...|.+-++..++ -.+
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 2222333446788888999999999999999999999987 6664 4677777889999999999999999986 335
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.|-..|..|..+|.-.+.+.-|+-.|++... -.|.+...|.+|..+|.+.++.++|++.|+++......+..++..|++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE-LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6789999999999999999999999999883 244556669999999999999999999999999999888899999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 536 IYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+|.+.++.++|.+.+++-.+.-. ..+ ...|+...+...|.+-+..+++..+..
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~----------~eg---------~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSE----------LEG---------EIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH----------hhc---------ccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999999999998775210 000 124556666666777766666655443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.3e-13 Score=132.21 Aligned_cols=198 Identities=14% Similarity=0.063 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSA 431 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 431 (619)
+.+|.++.++|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .|... +|..+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhh
Confidence 3444455555555555555555555544322 334444555555666677777777766533 55543 66677777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
|.+.++++.|.-.|+.+. .+.|. ......+...+.+.|+.++|+++++++..- ++.++..--.-+..+...++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcchH
Confidence 788888888888887776 44554 455566777788888889999988887722 3333222334445577789999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
+|.+.++++.++.|++...+..++.+|.+.|+.+.|+.-+--|.+...+
T Consensus 575 eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999999999888877765443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=2e-12 Score=128.21 Aligned_cols=277 Identities=10% Similarity=0.024 Sum_probs=195.8
Q ss_pred cCCHHHHHHHHccCCCC--Chhh-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHH
Q 007077 268 CGQLEKARDLFDRSPVR--DIVL-WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV--ALLTGCAQLGALEQGKW 342 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 342 (619)
.|+++.|++.+...... ++.. |........+.|+++.|...+.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 2222 32233444778888888888888876 345543222 33566778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---h--------hhHHHHHHHHHhCCChHHHHHHHH
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD---A--------ASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 6677788888888888889988888888877532 1 133333444444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc
Q 007077 412 QMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI 491 (619)
Q Consensus 412 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 491 (619)
.+... .+.+......+..++...|+.++|...+++..+. +|+.... ++.+....++.+++++.+++... ..+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk-~~P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK-QHGD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh-hCCC
Confidence 65443 1345667788888899999999999999888753 4554322 23333456899999999988773 2444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+...+.++...|...|++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455888889999999999999999999999998877 77899999999999999999987654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2.4e-12 Score=127.66 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
++.....+...|.+.|++++|.+++..+.+.+..++.. ...+- ...+..++.
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------------------------~~a~~~l~~ 237 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------------------------QQAWIGLMD 237 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH---------------------------HHHHHHHHH
Confidence 45566666667777777777777777776655432211 11000 001111222
Q ss_pred HHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007077 365 MYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 441 (619)
......+.+...++++.+.+ .++.....+...+...|+.++|...+++..+. .|+.... ++.+....++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHH
Confidence 22222333444444444432 24555555555666666666666666655553 3333211 12222334556666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 442 RRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
.+..+...+. .+-|...+.++...+.+.|++++|.+.|++.... .|+...+..+...+.+.|+.++|.+++++...
T Consensus 314 l~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655543 2333445555566666666666666666655522 22333355555566666666666666665544
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=5.1e-12 Score=126.34 Aligned_cols=442 Identities=13% Similarity=0.085 Sum_probs=247.1
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 6 QIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS----PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
.++..+-..|+.|+..+|.++|..|+ ..|+.+.|- +|..|+- -+...++.++.++.++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 46777888999999999999999999 999999998 8876652 23344555665555555555443
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHH---HHHHHHHH----HhCC-----------------CCChhhHHHHHHHhHhcC
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKG---EKVHGYVV----KTGL-----------------EFDTYVCNSIMDMYGVLG 137 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g 137 (619)
.|-+.||..++.+|...||+..- ++.++.+. ..|+ -||.. .++....-.|
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eg 153 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEG 153 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHH
Confidence 45555666666666666654331 11111111 1111 01111 1111111122
Q ss_pred ChhHHHHHHccC---------------------------------C-CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 138 KICNVKKLFDEM---------------------------------P-DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 138 ~~~~A~~~~~~~---------------------------------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
-++.+.+++..+ . .++..+|...+..-..+|+.+.|..++.+|++
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke- 232 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE- 232 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-
Confidence 222222222222 2 26778888888888899999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHH-----------------
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARE----------------- 245 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~----------------- 245 (619)
.|++.+.+.|..++-+ .++......+...+... +.|+..++...+....++|....+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 8998888877777655 67777777777777666 77777776655555444433222111
Q ss_pred -------HhccC---------CC-------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHH
Q 007077 246 -------LFDEM---------PN-------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR-------DIVLWTAMING 295 (619)
Q Consensus 246 -------~~~~~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~ 295 (619)
.++.- ++ .....|...+.. ..+|.-+....+-..+..| ++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 11100 00 011122222221 1244444444444333322 33344433333
Q ss_pred HHHc----------------------CChhHHHHHHHHHHHcCCCCCHH----------------------------HHH
Q 007077 296 YVQF----------------------NRFDEAVALFREMQIIRLKPDKF----------------------------ILV 325 (619)
Q Consensus 296 ~~~~----------------------g~~~~A~~~~~~m~~~g~~p~~~----------------------------~~~ 325 (619)
|.+. ....+..++.... .||.. .-.
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3221 1111111111111 22211 122
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHh
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD------AASWTSIICGLAM 399 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~ 399 (619)
.++..|++.-+..++...-+.....-+ ...|..||+.++.....+.|..+.++...++ ..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 334444444444444433333322221 2568889999999999999999999888663 4457778888889
Q ss_pred CCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 400 NGKINKALELFSQMISGGA-KPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
.+....+..+++++.+.-. .|+ ..++..++......|+.+.-.++++-+... |+..+ .-++....+.++...|
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeeccchhhh
Confidence 9999999999998876422 232 346666777777778877777777666543 43321 2233333444555555
Q ss_pred HHHHh
Q 007077 478 EELIR 482 (619)
Q Consensus 478 ~~~~~ 482 (619)
.+.++
T Consensus 616 ~ea~e 620 (1088)
T KOG4318|consen 616 QEAPE 620 (1088)
T ss_pred hhcch
Confidence 44443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.7e-12 Score=118.66 Aligned_cols=257 Identities=10% Similarity=0.042 Sum_probs=186.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVA--LLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
.-|.+.|+++.|+++++-..+..-+.-...-+. .+.-+.-..++..|.++-+..+... .-++...+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 347789999999999988765443322222222 2222223346667766666554432 2233333333334456799
Q ss_pred HHHHHHHHHhcCCCChhhHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 372 IEKALEIFYELREKDAASWTSII---CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
+++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999988766544443 4577889999999999887643 2345567778888898899999999999877
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. -++.|+.....|.+.|-+.|+-..|.+..-.-- +-.+-+..+..-|..-|....-.+.++..|+++.-+.|+...
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 64 566678999999999999999999998775543 223344455666777788888899999999999999999888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.-..++.++.+.|++..|..+++....
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 556678888999999999999998864
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.2e-11 Score=112.43 Aligned_cols=265 Identities=14% Similarity=0.047 Sum_probs=213.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..+++. .|..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44555556666788899999999999987753 445555666666788888877777666667665 4778889999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHH
Q 007077 365 MYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 440 (619)
.|.-.|+..+|.+.|.+...- -...|-....+|+-.|..++|+..|...-+. -|.. ..+.-+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999987644 4678999999999999999999999887765 3332 234445567888999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP------NENNEIIVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
|.++|.+... -.+-|+...+-+.-.....+.+.+|..+|+... ........++++.|.-+|++.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998874 223457777878877888899999999998655 11111245569999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 515 LAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 515 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+++++.+.|.+..+|..++-+|...|+++.|...+.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.5e-11 Score=110.73 Aligned_cols=356 Identities=12% Similarity=0.076 Sum_probs=239.6
Q ss_pred CCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH--HH
Q 007077 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV--ST 196 (619)
Q Consensus 119 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~l 196 (619)
...|...+-.....+-+.|..+.|+..|.+....-+..|.+.+....-..+.+.+..+.. +.+.|...+. .+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFFL 233 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHHH
Confidence 344544443344445567788888888877766555556555543332333333322221 2222222211 23
Q ss_pred HHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC------CCchhHHHHHHHHHhcC
Q 007077 197 LSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN------KNVICWTSMVSGYVNCG 269 (619)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 269 (619)
..++......+.+.+-.+..... ++.+...-+....+.-...++++|+.+|+++.+ .|..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34455555666776666666666 777777777777778888899999999999886 25566766654433332
Q ss_pred CHHH-HHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHH
Q 007077 270 QLEK-ARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYI 347 (619)
Q Consensus 270 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (619)
.+.- |..++ .+.+--+.|...+.+-|.-.++.++|+..|++..+. .|. ...++.+.+-|....+...|.+-++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 22222 222234456677788888889999999999988874 444 346777778888888999999999888
Q ss_pred HHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
++-. |.|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|+..|.+....| ..+...
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 8865 6677888889999998888888888888765 3488889999999999999999999999888776 446678
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVY---Q-IQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+..+...+-+.++.++|...|+..++.. | +.|. .....-|...+.+.+++++|........
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8888888888888888888888766532 1 2231 2333335666778888888776655544
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=1.3e-11 Score=123.55 Aligned_cols=269 Identities=11% Similarity=0.057 Sum_probs=158.2
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCC
Q 007077 74 LLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKD 153 (619)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 153 (619)
.++..+...|+.||.+||..++.-||..|+.+.|- +|..|.-...+.+..+++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888888777 8888877777777778888888888888776664 677
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHH-hHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRR-MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+.+|+.|..+|...|+... ++..++ |. .+...+...|.......++..+.- .|........++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe-------------~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLE-------------SINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHH-------------HHHhhhhhhccCcHHHHHHhhccc-CcccchhHHHHHH
Confidence 7788888888888887655 222222 21 111222222222222222211110 1111111123333
Q ss_pred HHHhcCChhhHHHHhccCCC--CCchhHHHHHHHHHhc-CCHHHHHHHHccCC-CCChhhHHHHHHHHHHcCChhHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN--KNVICWTSMVSGYVNC-GQLEKARDLFDRSP-VRDIVLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (619)
...-.|-++.+++++..++. .+. +...+++-.... ..+++-........ .+++.+|.+.+.+-..+|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 34444555666666655543 111 111112222211 12233333333333 36777777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+|.+.|.+.+.+.|-.++-+ .++...+..+++-|.+.|+.|+..++...+..+...
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 7777777777777766666654 666667777777777777777777776555554443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.3e-11 Score=123.14 Aligned_cols=255 Identities=13% Similarity=0.022 Sum_probs=146.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 007077 293 INGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI 372 (619)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (619)
...+.+.|+++.|.+.+.+..+....++..........+...|+++.|...++.+.+.. |.++.+...+...|...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 44455556666666666665543211111122223455555666666666666666654 44555566666666666666
Q ss_pred HHHHHHHHhcCCC---ChhhHHH----HHHHHHhCCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCcHHH
Q 007077 373 EKALEIFYELREK---DAASWTS----IICGLAMNGKINKALELFSQMISGGAKP-----DDITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 373 ~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~ 440 (619)
++|.+.+..+.+. +...+.. ...++...+..+++.+.+..+.+. .| +...+..+...+...|+.++
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 6666666665532 2222211 111112222333333444444443 23 45566666677777777777
Q ss_pred HHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEH---YGCLIDLLGRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
|.+.+++..+. .||... .....-.....++.+++.+.+++.. ..|+.|......++...|.+.|++++|.+.|
T Consensus 282 A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 282 AQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77777777653 233221 1111112233466777777776655 2334442245678888888888888888888
Q ss_pred H--HHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 517 A--LLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 517 ~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+ .+.+..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 359 e~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 359 KNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 46667777666 6688888888888888888888754
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=5.6e-11 Score=118.69 Aligned_cols=146 Identities=12% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHH
Q 007077 373 EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITF---IGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 373 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~ 446 (619)
+...+.++...+ .++..+..++..+...|++++|.+++++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344445555543 36777888888888888888888888888876 5554421 111122234577788888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+.+.-.|+.....++...+.+.|++++|.+.|++...-...|+...+..+...+.+.|+.++|.+++++..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87764322222256668888888889999999988842211123334447788888888999999988888764
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=4.6e-14 Score=133.75 Aligned_cols=260 Identities=15% Similarity=0.171 Sum_probs=91.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc
Q 007077 58 LLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT-YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL 136 (619)
Q Consensus 58 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 136 (619)
.+...+.+.|++++|+++++.......+|+... |..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 445666777888888888865444432344433 334444555677788888888887765532 45556666666 577
Q ss_pred CChhHHHHHHccCCC--CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 007077 137 GKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHR 214 (619)
Q Consensus 137 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (619)
+++++|.+++...-+ +++..+..++..+.+.++++++.++++........+++...|......+.+.|+.+.|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 778888777766532 455667777777888888888888888876533445566667777777778888888888888
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHH
Q 007077 215 YINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMIN 294 (619)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 294 (619)
.+.+..|.++.+.+.++..+...|+.+++.++++...+ ..+.|+..|..+..
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----------------------------~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK----------------------------AAPDDPDLWDALAA 222 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------------------------H-HTSCCHCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH----------------------------HCcCHHHHHHHHHH
Confidence 88887777788888888888888877776665544321 11345556667777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYIN 348 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 348 (619)
+|...|++++|+.+|++..+.. +.|......+..++...|+.++|.++..++.
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred Hhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 7777777777777777766532 3355566667777777777777777666553
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.1e-09 Score=102.38 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=69.4
Q ss_pred hcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChh-hHHHHHHHhhcCCChHHHH
Q 007077 135 VLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG-TVVSTLSACTALKNLELGK 210 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~ 210 (619)
..+++..|..+|+.... ++...|-..+..=.++..+..|..++++... +-|-.. .|---+..--..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 34556666666666554 3444555555555666666666666666543 222221 1222222223345555555
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCC--CCCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 007077 211 EIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMP--NKNVICWTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
++|+...+ ..|+...+.+.++.-.+-..++.|..+|++.. .|++.+|-....-=.+.|....|..+|++
T Consensus 162 qiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 162 QIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 55544333 34445555555555555555555555555433 24444444444444444554444444443
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.4e-10 Score=106.28 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=177.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
+.-.|+...|...|+..+.....++.. |.-+...|....+.++....|....+.+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 455789999999999998865444432 7777778999999999999999999876 66778888888888999999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 376 LEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 376 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
..-|++...- ++..|-.+..+.-+.+++++++..|++.+.. -|+ +..|+.....+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998764 4556666666667889999999999999988 666 568999999999999999999999998753
Q ss_pred cCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 452 YQIQPK---------LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 452 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.|+ +.+--.++-.- =.+++..|..++++.. +-++.....|.+|...-.+.|+.++|+++|++...+
T Consensus 492 ---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~-e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 ---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI-ELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH-ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344 11111222222 2389999999999998 447777778999999999999999999999998765
Q ss_pred CCC
Q 007077 523 ESK 525 (619)
Q Consensus 523 ~p~ 525 (619)
...
T Consensus 567 Art 569 (606)
T KOG0547|consen 567 ART 569 (606)
T ss_pred HHh
Confidence 443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.8e-10 Score=102.50 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCC--hhHHHHHHHHHHhcCChhh
Q 007077 167 CMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFT--PIMGNALLDMYCKCGCLSE 242 (619)
Q Consensus 167 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~ 242 (619)
+.++++|+++|-+|.+ +-+-+..+-.++.+.+.+.|..+.|..+|..+.++ .+.+ ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4667777777777765 22222223344555566666666666666666654 1111 1223455566666677777
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 007077 243 ARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF 322 (619)
Q Consensus 243 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 322 (619)
|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-++..+
T Consensus 126 AE~~f~~L~de~ef----------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 126 AEDIFNQLVDEGEF----------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHHHHHHhcchhh----------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 77666665442111 12234445666666666666666666666655444332
Q ss_pred ----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----hhHHHHH
Q 007077 323 ----ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----ASWTSII 394 (619)
Q Consensus 323 ----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~ 394 (619)
.|.-+...+....+.+.|...+.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 23344444445556666666666665554 33334444556666677777777777777665553 3445566
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---c
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR---A 471 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~ 471 (619)
.+|.+.|+.++....+.++.+. .+....-..+...-....-.+.|..++.+-..+ +|+...+..+++.-.. .
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccc
Confidence 6777777777777777777666 333333333333333333344454444443332 4777777666665432 2
Q ss_pred CCHHHHHHHHhhCC
Q 007077 472 GLLDEAEELIRKIP 485 (619)
Q Consensus 472 g~~~~A~~~~~~~~ 485 (619)
|...+.+.++++|.
T Consensus 332 g~~k~sL~~lr~mv 345 (389)
T COG2956 332 GRAKESLDLLRDMV 345 (389)
T ss_pred cchhhhHHHHHHHH
Confidence 33444444444443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-10 Score=109.20 Aligned_cols=435 Identities=12% Similarity=0.076 Sum_probs=244.0
Q ss_pred CCCCChhHHHHHHHHhccCCCCChhHHHHhhc--cCCCCCcccHHHHHHHHHhcCChhHHHHHHH----HhHHCC-----
Q 007077 15 GLQQNPETLNKLMVFCTHPSHGNLLYAEKIFG--SIQSPCLLAYNLLIKAFAKKGSFRKSLLLFS----KLRERG----- 83 (619)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~~----- 83 (619)
|+..||.---.+.+++. -.|+++.|-.+.. .+...|..+......++.+..+|+.|..++. .+....
T Consensus 44 ~l~~dp~d~~~~aq~l~--~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLY--LGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 44456655566777776 6778888877765 4557888888889999999999999999988 222110
Q ss_pred ----CCCCccc----HHHHHH-------HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc-CChhHHHHHHc
Q 007077 84 ----VSPDNFT----YPFVFK-------AVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL-GKICNVKKLFD 147 (619)
Q Consensus 84 ----~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~ 147 (619)
+.+|..- -+.-.+ .+....+.++|...+.+... .|...+..+...-... -...+-..+|+
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~ 197 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLE 197 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHh
Confidence 1111111 111112 22233445556555555544 3333333322221110 00112223333
Q ss_pred cCCC-----CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 007077 148 EMPD-----KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEF 222 (619)
Q Consensus 148 ~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (619)
..+- -+......+.....-...-+.....-.+-.- .+..-+..........|-..+++....++.+.+.+..|+
T Consensus 198 ~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl-~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf 276 (611)
T KOG1173|consen 198 SLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL-IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF 276 (611)
T ss_pred cccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh-hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC
Confidence 2210 0111111111100000000000000000000 223334444445555566778888888888888888777
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHH
Q 007077 223 TPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD---IVLWTAMINGY 296 (619)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~ 296 (619)
....+..-|..+...|+..+-..+=.++.+ ....+|-++.--|.-.|+.++|++.|.+...-| ...|-.+...|
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 777777777777777776665555555544 345678888777777788888888887655333 35788888888
Q ss_pred HHcCChhHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHH
Q 007077 297 VQFNRFDEAVALFREMQII--R-LKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIE 373 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~--g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 373 (619)
.-.|..|+|+..|...-+. | ..| +.-+..-|.+.++.+.|.+.|.+..... |.|+.+.+-+.-.....+.+.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 8888888888888776542 1 122 2223334667778888888887776653 566777777777677777777
Q ss_pred HHHHHHHhcCCC----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 374 KALEIFYELREK----------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 374 ~A~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
+|...|+....+ =..+++.|..+|.+.+.+++|+..|++.+... +-+..++.++.-.+...|+++.|.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 777777765421 12235555566666666666666666655541 2234455555555666666666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHH
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
.|.+.. .+.|+..+-..++
T Consensus 511 ~fhKaL---~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 511 HFHKAL---ALKPDNIFISELL 529 (611)
T ss_pred HHHHHH---hcCCccHHHHHHH
Confidence 666554 4455544433333
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=3.1e-08 Score=96.44 Aligned_cols=504 Identities=15% Similarity=0.181 Sum_probs=312.1
Q ss_pred hhHHHHHHHHhccCCCCChhHHHHhhccC----C-CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHH
Q 007077 20 PETLNKLMVFCTHPSHGNLLYAEKIFGSI----Q-SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFV 94 (619)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 94 (619)
+.+|-.-++... ++|++...+..|++. | ......|...+......|-++-++.+|++-++. ++..-...
T Consensus 102 pRIwl~Ylq~l~--~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLI--KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHH--hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 344444445555 778888888888743 3 234567888888888888888899999888764 33336677
Q ss_pred HHHHhccCChhHHHHHHHHHHHh------CCCCChhhHHHHHHHhHhcCC---hhHHHHHHccCCC--CCe--ecHHHHH
Q 007077 95 FKAVGWLGEVKKGEKVHGYVVKT------GLEFDTYVCNSIMDMYGVLGK---ICNVKKLFDEMPD--KDV--VSWNVSI 161 (619)
Q Consensus 95 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~li 161 (619)
+..+++.+++++|.+.+...+.. ..+.+...|..+.+..++..+ --....+++.+.. +|. ..|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77888888999888888776532 123444566666666655433 2234445555543 233 3799999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC----------------C------ChHHHHHHHHHHHHh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL----------------K------NLELGKEIHRYINQE 219 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~ 219 (619)
.-|.+.|.++.|.++|++-.+ . ......|+.+..+|+.- + +++....-++.+...
T Consensus 256 dYYIr~g~~ekarDvyeeai~-~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ-T--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH-h--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999988655 1 12233344444433221 1 122222223332221
Q ss_pred ------------ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-------C--CchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 220 ------------LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN-------K--NVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 220 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
.+.++..+..-+. +..|+..+-...|.+... + -...|..+...|-..|+++.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1222222222222 223444444444444332 1 2235889999999999999999999
Q ss_pred ccCCCCCh-------hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHcc
Q 007077 279 DRSPVRDI-------VLWTAMINGYVQFNRFDEAVALFREMQIIRLK----------P-------DKFILVALLTGCAQL 334 (619)
Q Consensus 279 ~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~ 334 (619)
++...-+- .+|......=.++.+++.|+++++......-. | +...++..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 98764322 35666666667788899999988876532111 1 122344445555567
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CC-hhhHHHHHHHHHh---CCChHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE----KD-AASWTSIICGLAM---NGKINKA 406 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~l~~~~~~---~g~~~~A 406 (619)
|-++..+.+++.+++..+.. +.+.......+....-++++.+++++-.. |+ ...|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 78888999999999887543 33333344445666778999999998653 33 3467776655543 3468999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHh-------cCCHH
Q 007077 407 LELFSQMISGGAKPDDITFIGVL--SACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGR-------AGLLD 475 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-------~g~~~ 475 (619)
..+|++.++ |++|...-+.-++ ..-..-|....|..++++... ++++. ..+|+..|.--.. .+-++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 999999998 6777654222222 223456889999999999766 55554 4567766643322 12344
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 544 (619)
+|++.+ |+........-+...-.+.|.++.|..++.-..++.|+ ++..|...-..=.+.|+-+
T Consensus 647 kaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 647 KAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 444432 22222222334445557789999999999888777654 5566777777777888833
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.5e-10 Score=101.63 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=118.6
Q ss_pred CCHHHHHHHHccCCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCcHHHHHH
Q 007077 269 GQLEKARDLFDRSPVRDIV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPD---KFILVALLTGCAQLGALEQGKW 342 (619)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~ 342 (619)
.+.++|.++|-.|...|+. +.-+|.+.|.+.|..|.|+++-+.+.++.--+. ......|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4455555555444433332 223344455555555555555554443211111 0122233334444455555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh--------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAA--------SWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+.. .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555544432 112223344445555555555555544443322111 12223333334444555555555554
Q ss_pred HCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc
Q 007077 415 SGGAKPDDIT-FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI 491 (619)
Q Consensus 415 ~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 491 (619)
+. .|+.+- -..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+.++......+
T Consensus 208 qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 208 QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 44 333321 122223444455555555555554433 222 3334444455555555555555554444222222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--CCChHHHHHHHHHHHhCCCcccC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS--ANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.. -..+...-....-.+.|...+.+-....|.-...|..+-.-+.. .|++.+-+..+++|....++..|
T Consensus 283 ~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 283 DA--ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cH--HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 21 22222222233333444444444444444444423222222222 23455555555666554444443
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.4e-08 Score=97.22 Aligned_cols=490 Identities=12% Similarity=0.087 Sum_probs=298.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHC-CCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRER-GVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM 132 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 132 (619)
..|-.-+..+.++|+...-...|+..+.. .+.-....|...+......+-++.+..++++.++ .++..-+.-|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 56777788888999999999999887654 2222345688888888888889999999999887 344457778888
Q ss_pred hHhcCChhHHHHHHccCCCC----------CeecHHHHHHHHHcCCChhH---HHHHHHHhHhcCCCCCCh--hhHHHHH
Q 007077 133 YGVLGKICNVKKLFDEMPDK----------DVVSWNVSISGHVKCMRFED---AVDVFRRMRQGCNLMPDE--GTVVSTL 197 (619)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p~~--~~~~~ll 197 (619)
+++.+++++|.+.+...... +-..|..+-...+++-+.-. .-.+++.+ .+.-||. ..|.++.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g---i~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG---IRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh---cccCcHHHHHHHHHHH
Confidence 99999999999888877642 33456666665555443332 23334433 3344554 3678888
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC----------------------hhhHHHHhccCCC---
Q 007077 198 SACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC----------------------LSEARELFDEMPN--- 252 (619)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~--- 252 (619)
.-|.+.|.++.|..+++.....+. ...-++.+.+.|..-.. ++-...-|+.+.+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 889999999999999988877611 11222333333332111 1111222222221
Q ss_pred ------------CCchhHHHHHHHHHhcCCHHHHHHHHccCC-------CC--ChhhHHHHHHHHHHcCChhHHHHHHHH
Q 007077 253 ------------KNVICWTSMVSGYVNCGQLEKARDLFDRSP-------VR--DIVLWTAMINGYVQFNRFDEAVALFRE 311 (619)
Q Consensus 253 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (619)
.++..|..-+.. ..|+..+-...|.+.. .+ -...|..+.+.|-..|+.+.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 011222222221 2333333333333211 11 124577778888888888888888887
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-----------CC------ChhHHHHHHHHHHhCCC
Q 007077 312 MQIIRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRI-----------TV------DAVVATALIEMYAKCGL 371 (619)
Q Consensus 312 m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~ 371 (619)
..+...+-- ..+|......=.+..+++.|..+.+......- ++ +..+|...++.....|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 765432211 12233333333455566677776665532211 11 22345555666666777
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccCcHHHHHHH
Q 007077 372 IEKALEIFYELREKDAASWTSIIC---GLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACS---HGGLVDEGRRF 444 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~~g~~~~a~~~ 444 (619)
++....+++++.+--+.|-..+++ -+-.+.-++++.+.|++-+..--.|+.. .|+..+.-+. ..-.++.|+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777777777776543333333322 2335566788888888876654456653 5666655443 34578999999
Q ss_pred HHHhHHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 445 FNTMTEVYQIQPKLE--HYGCLIDLLGRAGLLDEAEELIRKIPNEN-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
|++..+ +.+|... .|-.....-.+-|....|+++++++...- ...-...||..|.--...=-+..-..+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999987 7776632 22223333346788899999999876321 222334688877665554445666788999998
Q ss_pred cCCCCcch--HHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 IESKDSSF--HTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 ~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.-|++..- ....++.=.+.|..+.|..++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 88876543 34557777888999999998877654
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=3.9e-11 Score=110.99 Aligned_cols=199 Identities=13% Similarity=0.039 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999987653 256678888899999999999999999988763 2345677778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
+...|++++|...++........+.....+..+..++...|++++|.+.+++.... .+.....+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHH
Confidence 89999999999999998864222334567778889999999999999999987732 33344568888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
|...++++....|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988888888888899999999999999999888764
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=5.4e-10 Score=110.29 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=165.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhCCCHHHHHHHHHhcCC-------C---
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINEN-----RI-TVDA-VVATALIEMYAKCGLIEKALEIFYELRE-------K--- 385 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--- 385 (619)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555666666777777776666665443 10 1222 2233466778888888888888877652 1
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CC
Q 007077 386 -DAASWTSIICGLAMNGKINKALELFSQMIS-----GGAKPDD-I-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ--IQ 455 (619)
Q Consensus 386 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 455 (619)
-..+++.|..+|.+.|++++|...+++..+ .|..+.. . -++.+...|...+.+++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 245677777888888888888777776543 2223332 2 566777788999999999999988766543 22
Q ss_pred CC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Q 007077 456 PK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN-------ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK--- 521 (619)
Q Consensus 456 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 521 (619)
++ ..+++.|...|...|++++|.++++++.. ..+......++.+...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 35789999999999999999999987751 11333344578889999999999999999888753
Q ss_pred -cCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 -IESKD---SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 -~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..|+. ...|..|+.+|.+.|++++|.++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444 45688999999999999999999998863
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.9e-08 Score=90.70 Aligned_cols=289 Identities=15% Similarity=0.056 Sum_probs=199.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI-LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+.|+.....+..++...|+.++|+..|++.+. +.|+..+ .....-.+.+.|+++....+...+.... ..+...|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 44777788888888888888888888887654 3454432 1122223456677777766666655432 122233333
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
-........+++.|+.+-++..+. +...+-.-...+...|++++|.-.|+..+.. .|. ..+|..++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhch
Confidence 344455667888888888876644 4445555557788889999999999888766 654 5689999999998999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLI-DLLG-RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
+.+|...-...... ++.+..+...+. ..+. ...--++|.+++++... -.|......+.+...|...|.++.++.+
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 98888777666553 334444444442 2222 23345788888888773 2444555577788888999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDR 595 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 595 (619)
+++.....|+..- +..|++++...+.+.+|++.|..... .+|+.+....-|..
T Consensus 461 Le~~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHH
Confidence 9999888887765 88899999999999999998887765 36777777777777
Q ss_pred HHHHHHHhccc
Q 007077 596 MAKTLLDSKQN 606 (619)
Q Consensus 596 ~~~~~~~~~~~ 606 (619)
+.+++++.+-+
T Consensus 514 lEK~~~~~DAT 524 (564)
T KOG1174|consen 514 LEKSDDESDAT 524 (564)
T ss_pred HHhccCCCCcc
Confidence 77777765533
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.8e-09 Score=96.07 Aligned_cols=467 Identities=14% Similarity=0.126 Sum_probs=260.3
Q ss_pred CCChhHHHHhhccCC------CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHH
Q 007077 35 HGNLLYAEKIFGSIQ------SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGE 108 (619)
Q Consensus 35 ~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 108 (619)
..++..|..+++.-. ..++..| +..++.+.|++++|+..|+.+.... .|+...+..+.-+..-.|.+.+|.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 557777777776332 1122233 3456668899999999998877653 445555555555555677777777
Q ss_pred HHHHHHHHhCCCCChhhHHH-HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 109 KVHGYVVKTGLEFDTYVCNS-IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
.+-... |+...... |.+.-.+.++-++-..+-+.+.+. ..---+|.+.....-.+.+|+++|++... -.
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn 181 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DN 181 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cC
Confidence 765543 34434443 445555666655555544444321 12233444555555678899999999866 23
Q ss_pred CChhhHHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHH
Q 007077 188 PDEGTVVSTLSA-CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYV 266 (619)
Q Consensus 188 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 266 (619)
|+-...+.-+.. |.+..-++.+..++....+.+|.++...|..+....+.=.-..|..-...+-+.-...| -.+.-++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhHHHHH
Confidence 454555544444 46888889999999988888888888887766655543222222221111111000000 0111111
Q ss_pred hc-----CCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 267 NC-----GQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 267 ~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
+. ..-+.|+.++-.+...=+..--.++-.|.+.++..+|..+.+++.- ..|-......+.. +..|+
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQ----- 331 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQ----- 331 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhh-----
Confidence 11 1112222222111111112222333445556666666665554421 1222222211111 11111
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 342 WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
-......+.-|...|.-.-+ ..+.-..++.+.+.-..++++.+..+.....-
T Consensus 332 -----------------------e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 332 -----------------------ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -----------------------hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112334444443322 13444566777777777888888888877665
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY-GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
- ..|...-..+.++.+..|++.+|.++|-.+... .+ .|..+| ..|..+|.++|+++-|.+++-++...+...+ .
T Consensus 389 F-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs--L 463 (557)
T KOG3785|consen 389 F-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS--L 463 (557)
T ss_pred h-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH--H
Confidence 2 333444445678888999999999998776532 22 233444 4567899999999999999988764443333 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
...+..-|.+.+.+--|-+.|+.+..++|.... | .|+-.....++..+....-.|.|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn-W---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPTPEN-W---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc-c---------CCccchHHHHHHHHHcCCCCCCc
Confidence 444556799999999999999999999987654 3 35555566677766654444433
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=2.3e-09 Score=98.68 Aligned_cols=277 Identities=13% Similarity=0.067 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 007077 268 CGQLEKARDLFDRSPV---RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIH 344 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 344 (619)
.|++.+|+++..+... .....|..-+.+-.+.|+.+.+-.++.+..+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555666555544332 1233344444555666777777777777665433444445555556666677777777777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 345 GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-----------AASWTSIICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 413 (619)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666665 4556666777777777777777777777766531 235555655555555555544555554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCccc
Q 007077 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NENNEII 492 (619)
Q Consensus 414 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 492 (619)
... .+-+...-.+++.-+...|+.++|.++.++..++ +..|.. . ..-...+-++.+.=++..++.. ..|+.|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 332 2334445556666667777778887777777665 444441 1 1112334455555455444433 223333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
..+.+|...|.+++.+.+|...++.+.+..|.... |..+++++.+.|+..+|.+++++..
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44778888888888888888888888887777666 8888888888888888888887765
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.2e-09 Score=100.39 Aligned_cols=253 Identities=14% Similarity=0.102 Sum_probs=212.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 007077 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEI 378 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 378 (619)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988776544 3456677778889999999999999998875567777788888889999999999988
Q ss_pred HHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 379 FYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-------ITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 379 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
+.++. ..++........+|.+.|++.+...++.+|.+.|.-.++ .++..+++-+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 87765 457889999999999999999999999999999876654 36888888888877777777888887
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. ..+-++..-.+++.-+.++|+.++|.+++.+.....-.+. ...++ .+.+-++.+.-++..++..+..|++|.
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 66 3455566778899999999999999999998886655554 33333 567889999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
.+..|+..|.+.+.|.+|.+.++...+.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997776443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-08 Score=100.91 Aligned_cols=402 Identities=14% Similarity=0.062 Sum_probs=220.8
Q ss_pred CCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH
Q 007077 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV 194 (619)
Q Consensus 118 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 194 (619)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++.-.....-++|...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3455777777777777788888888888877653 2345677777788888887888887776533111122333333
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHh-----ccCChhHHHHHHHHHHhcC-----------ChhhHHHHhccCCCCCchh
Q 007077 195 STLSACT-ALKNLELGKEIHRYINQE-----LEFTPIMGNALLDMYCKCG-----------CLSEARELFDEMPNKNVIC 257 (619)
Q Consensus 195 ~ll~~~~-~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~ 257 (619)
..-..|. +.+..+++..+...++.. -...+..+..+.-+|...- ...++.+.+++..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---- 473 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---- 473 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----
Confidence 3333443 446666666666655552 1222333333333333211 011222333332210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 007077 258 WTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGAL 337 (619)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 337 (619)
.+.|+...--+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++
T Consensus 474 ------------------------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 474 ------------------------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 11111111112222344445555555555555543344444444444445555555
Q ss_pred HHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhCCCHHHHHH--------------------------HHHhcC---C--C
Q 007077 338 EQGKWIHGYINE-NRITVDAVVATALIEMYAKCGLIEKALE--------------------------IFYELR---E--K 385 (619)
Q Consensus 338 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~--------------------------~~~~~~---~--~ 385 (619)
..|..+.+.... .|. |......-++.-...++.++|+. ....+. . .
T Consensus 530 ~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 555555444332 111 11111111111111222222222 211111 0 0
Q ss_pred C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 386 D-AASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 386 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
+ +.++..+..-.. -+...+..-.. +...-+.|+. ..|......+...+..++|...+.+... ..+.
T Consensus 608 ~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 608 DAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred ccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 1 122222221111 11111100000 1111122221 2344555677888999999988887765 3344
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCcchHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEK--LAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 534 (619)
....|......+...|.+++|.+.|..... -+|..+++..++...+.+.|+...|.. ++..+.+++|.++.+|..++
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 566777778889999999999999987762 244444559999999999999888888 99999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 007077 535 NIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++.+.|+.++|.+-|.-...
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 999999999999999988764
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=103.76 Aligned_cols=228 Identities=13% Similarity=0.118 Sum_probs=159.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 290 TAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 290 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+++.|..++.+-.+. +|.++.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66888899999999999998887764 455567777888888888888888888887765 355666666677778888
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 370 GLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
++.++|.++|+...+. ++.+..++..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|...++++-+...|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888876643 5666777777888888888888888888888854 55667777777777888888777777
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
+.... -..|+. ....|-.+.......|++..|.+.|+.+..-+|++
T Consensus 383 RAlst-at~~~~---------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 383 RALST-ATQPGQ---------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHhh-ccCcch---------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 76543 222321 11124444444445566666666666666666666
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+++.|+-.-.+.|+.++|..++....+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666666666666666666666665554
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=2.8e-12 Score=84.75 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc
Q 007077 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW 100 (619)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (619)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998875
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=3.4e-08 Score=96.47 Aligned_cols=420 Identities=15% Similarity=0.101 Sum_probs=216.5
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHH
Q 007077 100 WLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDV 176 (619)
Q Consensus 100 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 176 (619)
..+++..+.++.+.+.+ +.+....+.....-.+...|+.++|......-.. .+.++|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555556666655555 2222233333333334445666666665554443 3455666666666666677777777
Q ss_pred HHHhHhcCCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---
Q 007077 177 FRRMRQGCNLMPDE-GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--- 252 (619)
Q Consensus 177 ~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 252 (619)
|..... +.||. ..+..+.-.-++.++++........+.+..+.....|..++.++.-.|+...|..+.+...+
T Consensus 98 y~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 776644 33333 23333333334555555555555555555555555666666666666666666665554432
Q ss_pred --CCchhHHHH------HHHHHhcCCHHHHHHHHccCCCC--C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 007077 253 --KNVICWTSM------VSGYVNCGQLEKARDLFDRSPVR--D-IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 253 --~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 321 (619)
++...+... .....+.|..++|.+.+....+. | ...--+....+.+.++.++|..++..+... .||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 222222111 12233445555555554433321 1 112223344455666666666666666553 3555
Q ss_pred HHHHHHHHHHH--ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 007077 322 FILVALLTGCA--QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAM 399 (619)
Q Consensus 322 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 399 (619)
.-|...+..+. -.+..+....++....+.- |. ....-..=++....
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r------------------------------~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKY--PR------------------------------HECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cc------------------------------cccchhccHHHhCc
Confidence 44433333222 1111111112222222110 00 00000000000011
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhHHh---------cCCCCChhH--HHHHHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDE-GRRFFNTMTEV---------YQIQPKLEH--YGCLIDL 467 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~---------~~~~p~~~~--~~~l~~~ 467 (619)
..-.+..-+++..+.+.|++|--..+.++..-=.+..-.++ +..+...+... ..-+|.... +..++..
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 11223334455556666654432232222211000000111 11111111100 001455444 4457788
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
|-+.|+++.|..+++.... ..|..+..|..-...+.+.|++++|...++++.+++-.|..+...-++-..++.+.++|.
T Consensus 381 ~D~~g~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHcccHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 8899999999999998883 345555556666788899999999999999999999888887778888889999999999
Q ss_pred HHHHHHHhCCC
Q 007077 548 NVRQKMKEMGV 558 (619)
Q Consensus 548 ~~~~~m~~~~~ 558 (619)
++..+....|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999887664
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.3e-07 Score=91.42 Aligned_cols=443 Identities=14% Similarity=0.142 Sum_probs=247.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH--HHHHhH--h
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNS--IMDMYG--V 135 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 135 (619)
++-+...|++++|.+...++...+ +-|...+..-+-++.+.+.+++|..+.+.- +. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHHH
Confidence 456667788888888888888764 445566777777778888888887554322 11 111111 234444 6
Q ss_pred cCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC-CChhhHHHHHHHhhcCCChHHHHHHHH
Q 007077 136 LGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM-PDEGTVVSTLSACTALKNLELGKEIHR 214 (619)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (619)
.+..++|...++....-+..+...-...+.+.|++++|+++|+.+.+ .+.. -|...-..++.+-. ..-.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a---------~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAA---------ALQV 161 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHH---------hhhH
Confidence 78888888888854444444556666777888888888888888865 2221 11111112221111 0000
Q ss_pred HHHHh---ccC-ChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHcc-CCCC-----
Q 007077 215 YINQE---LEF-TPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR-SPVR----- 284 (619)
Q Consensus 215 ~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~----- 284 (619)
...+. .+. +-..+-.....+...|++.+|+++++...+ +..+ ....
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~------------------------~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR------------------------ICREKLEDEDTNEE 217 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------HHHHhhcccccchh
Confidence 01111 111 111122223345556666666665554311 0000 0100
Q ss_pred Ch-----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCcHHH--HHHHH----------
Q 007077 285 DI-----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLT---GCAQLGALEQ--GKWIH---------- 344 (619)
Q Consensus 285 ~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~---------- 344 (619)
+. ..--.|...+...|+..+|..+|...++.. .+|........+ +...-.++-. +...+
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 11 123345566778899999999998887764 444432222211 1111111111 11111
Q ss_pred --HHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhhHHHHHHHH--HhCCChHHHHHHHHHHHHCCCC
Q 007077 345 --GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-AASWTSIICGL--AMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 345 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
..+.... ......-+.++.+|. +..+.+.++........ ...+.+++... ++...+..+.+++...-+. .
T Consensus 297 ~l~~Ls~~q-k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~ 371 (652)
T KOG2376|consen 297 LLSKLSKKQ-KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--H 371 (652)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--C
Confidence 1111100 001111133444443 45566777766666543 33344444332 2333578888888888776 5
Q ss_pred CCH--HHHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 007077 420 PDD--ITFIGVLSACSHGGLVDEGRRFFN--------TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP---- 485 (619)
Q Consensus 420 p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 485 (619)
|.. ......+......|+++.|.+++. .+.+. .-.+.+...++..+.+.++.+-|.+++.+..
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 554 355556667788999999999998 44432 3334567778888888888777776665543
Q ss_pred -C-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 486 -N-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 486 -~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
. .+......+|.-+...-.++|+-++|...++++.+..|++..+...++-+|++. +.+.|..+-+++
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 1 111111222444444456779999999999999999999999999999988865 456666665554
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.3e-09 Score=113.25 Aligned_cols=259 Identities=13% Similarity=0.019 Sum_probs=186.7
Q ss_pred ChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH---------ccCcHHHHHHHHHHHHH
Q 007077 285 DIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCA---------QLGALEQGKWIHGYINE 349 (619)
Q Consensus 285 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 349 (619)
+...|...+.+-.. .+..++|+..|++..+. .|+.. .+..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23467899999998874 55543 4544444333 23457899999999988
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TF 425 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 425 (619)
.. +.+...+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 667788888889999999999999999997643 4667888999999999999999999999987 56543 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
..++..+...|++++|...++++... .+|+ ...+..+..+|...|++++|.+.+.++... .+.....++.+...+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh
Confidence 34444566789999999999998763 2343 556777888999999999999999987632 3333344566666667
Q ss_pred HcCCHHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 505 IYGNVDMGEKLAALLEK---IESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
..| +.|...++.+.+ ..|.++. .+..+|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 477777776654 3344444 366677778888888877 7777654
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=5.4e-08 Score=95.06 Aligned_cols=227 Identities=9% Similarity=0.008 Sum_probs=132.9
Q ss_pred hHHHHHHHHhccCCCCChhHHHHhhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHH
Q 007077 21 ETLNKLMVFCTHPSHGNLLYAEKIFGSIQS--P-CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKA 97 (619)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 97 (619)
..+..++..| ..+++...+++.+.+-. | ...|.....-.+...|+-++|......-.+..+. +.+.|..+.-.
T Consensus 9 ~lF~~~lk~y---E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCY---ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH---HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 4455666666 56666666555554421 1 1122222222345567777777776665554332 55566666666
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHH
Q 007077 98 VGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
+....++++|.+.+..+.+.+. .|...+.-+.-.-++.|+++.....-....+ .....|..+..++--.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887777442 3445666555555666666665555444433 23456777777777788888888
Q ss_pred HHHHHhHhcCCCCCChhhHHHHHH------HhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 175 DVFRRMRQGCNLMPDEGTVVSTLS------ACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
.+++...+...-.|+...+..... .....|.++.+.+.+......+......-..-.+.+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888887763333455554433222 23445566666655555444444444444555666777777777777777
Q ss_pred cCCC
Q 007077 249 EMPN 252 (619)
Q Consensus 249 ~~~~ 252 (619)
.+..
T Consensus 244 ~Ll~ 247 (700)
T KOG1156|consen 244 RLLE 247 (700)
T ss_pred HHHh
Confidence 7665
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.8e-09 Score=99.85 Aligned_cols=202 Identities=16% Similarity=0.150 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+....+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN----------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Confidence 3456666666777777777777777665432 1223344444444555555555555555444432 22
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
+...+..+...+...|++++|.+.+++.......|. ...+..+...+...|++++|...
T Consensus 98 --------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 98 --------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred --------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 233444445555555555666665555554321222 23444455556666666666666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
++..... .+.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666542 1223445666666666667777776666665432 22233345555566666677777766666655443
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.4e-11 Score=81.34 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007077 284 RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ 333 (619)
Q Consensus 284 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (619)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.5e-07 Score=85.19 Aligned_cols=445 Identities=12% Similarity=0.065 Sum_probs=235.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
+.-+..+.++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555666777777776654433221111111122233345666666666666655522 23444444444444445556
Q ss_pred hHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 007077 140 CNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE 219 (619)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (619)
.+|..+-...++ ++..-..|...-.+-++-++-. .+++.+...
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~------------------------------------~fh~~LqD~ 150 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL------------------------------------TFHSSLQDT 150 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH------------------------------------HHHHHHhhh
Confidence 666555544332 1222222333333334433333 333333221
Q ss_pred ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchhHHH-HHHHHHhcCCHHHHHHHHcc---CCCCChhhHHHHH
Q 007077 220 LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVICWTS-MVSGYVNCGQLEKARDLFDR---SPVRDIVLWTAMI 293 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li 293 (619)
. .-.-+|..+....-.+.+|++++.++.. |+....|. +.-+|.+..-++-+.++++. -.+.++..-|...
T Consensus 151 ~----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 151 L----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred H----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 1 1112333333333456667777766654 33333332 33445555555555554432 2233455555555
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ-----LGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
....+.=.-..|.+-.+++.+.+-+. |- .+.-+++ -.+-+.|.+++--+.+. .|. .--.|+-.|.+
T Consensus 227 cn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~ 297 (557)
T KOG3785|consen 227 CNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLN 297 (557)
T ss_pred HHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecc
Confidence 55555433334444445544433211 10 1111111 12345566665544432 222 22346667899
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 007077 369 CGLIEKALEIFYELREKDAASWTSIICGLAMNGK-------INKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDE 440 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 440 (619)
.+++.+|..+.+.+....+.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. ---++.+.+.-..++++
T Consensus 298 q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred cccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999998876665555444444444443 344555665544444443332 22334444555567899
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL-LSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~ 519 (619)
.+.++..+..- -...|...+ .+..+++..|++.+|+++|-++.. +...+..+|.++ ..+|.+.++++.|..++
T Consensus 378 Vl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~--- 451 (557)
T KOG3785|consen 378 VLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMM--- 451 (557)
T ss_pred HHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHH---
Confidence 99998888653 344444444 478899999999999999988874 343444456555 45677888888877665
Q ss_pred hccC-CCCc-chHHHHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 520 EKIE-SKDS-SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 520 ~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
.+.+ |.+. .....+++-+.+.+.+=-|.+.|..+....+.|.
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 3333 3322 2345667788888888888888888876554443
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=7.9e-10 Score=114.80 Aligned_cols=213 Identities=15% Similarity=0.003 Sum_probs=166.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCC
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYA---------KCGLIEKALEIFYELREK---DAASWTSIICGLAMNGK 402 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 402 (619)
++.++|...+++..+.. |.+...+..+..+|. ..+++++|...++++.+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999998864 445566666665554 234589999999987743 67788888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 007077 403 INKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
+++|...|++.++. .|+ ...+..+...+...|++++|...+++..+. .|+. ..+..++..+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999988 666 457778888999999999999999999864 4553 2333445556778999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++......+.....+..+..++...|++++|...++++....|.+......++..|...| ++|...++++.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9987643222233346777788889999999999999998888888888888888888888 488888888765
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-07 Score=87.28 Aligned_cols=268 Identities=10% Similarity=-0.040 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTG 330 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (619)
|+.....+...+...|+.++|...|++...-|+. ........+.+.|+.++...+...+.... .-....+-.-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 3334444444444445555554455443322222 22222333445566666555555543321 1111112222222
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHH
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR--E-KDAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
....++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+... . -+...|..|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 334455666666666555543 2333444444456677788888888887655 3 36788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 408 ELFSQMISGGAKPDDITFIGVL-SACS-HGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 408 ~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.+-...... +..+..++..+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+...|..++++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877776554 123344544442 3332 3344578899988866 45677 567778888999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.. +.++....+.|.+.+...+.+.+|...|..+..++|++..+
T Consensus 465 L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred Hh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 73 44455558899999999999999999999999999998763
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.4e-09 Score=101.60 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSH 434 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 434 (619)
+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++.++. .|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554432 23445555555555555555555555555544 443 2344445555555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.|++++|.+.|+...+. .|+..........+...+++++|.+.|++.....+++. |.. .......|+..++ .
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~---~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ---WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc---cHH-HHHHHHccCCCHH-H
Confidence 55555555555555532 23221111111122334455555555544331111111 211 1112223333222 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 515 LAALLE-------KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 515 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222221 333444445566666666666666666666655543
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=9.9e-10 Score=97.84 Aligned_cols=193 Identities=9% Similarity=0.032 Sum_probs=161.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccC
Q 007077 360 TALIEMYAKCGLIEKALEIFYELR--EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIG-VLSACSHGG 436 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g 436 (619)
+.+..+|.+.|.+.+|.+.|+... .+.+.||..|-..|.+..++..|+.++.+-++. .|-.+||.. ..+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 567888999999999999998765 357889999999999999999999999998887 788887654 457778889
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
+.++|.++++...+. .+.+++...++...|.-.++++-|+.+++++..- ...++..|+.+.-+|.-.++++.++..|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999998874 3456777888888899999999999999998844 3445667999999999999999999999
Q ss_pred HHHhccCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 517 ALLEKIES--K-DSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 517 ~~~~~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+++..... + -..+|..++.+....|++.-|.+-|+-....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99976543 2 34568899999999999999999998876543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=2.3e-09 Score=91.18 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=132.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 466 (619)
+...|.-+|.+.|++..|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+. .|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhH
Confidence 3455677888888888898888888887 6765 47888888888889999999888888753 444 667888888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|..|++++|...|++....|.-+ ...+|..+..+..+.|+.+.|+..+++.++.+|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888999999999998887555433 234588888778888999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 007077 546 VTNVRQKMKEMGV 558 (619)
Q Consensus 546 A~~~~~~m~~~~~ 558 (619)
|..++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9988888876554
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=3.1e-07 Score=92.26 Aligned_cols=431 Identities=12% Similarity=0.069 Sum_probs=217.4
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CCeecH-HHHHHHHHcC-----
Q 007077 96 KAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSW-NVSISGHVKC----- 167 (619)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~----- 167 (619)
..+...|++++|.+.++.-.+. +.............+.+.|+.++|..++..+.+ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4455667777777777654332 222334555666777777777777777777765 333333 3333333111
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHHHhcCChhhHHH
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMYCKCGCLSEARE 245 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (619)
.+.+....+|+.+.. .-|.......+.-.+.. | +.-...+...+.. ...-|.+++.|-..|......+-..+
T Consensus 91 ~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~-g--~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAE---KYPRSDAPRRLPLDFLE-G--DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHH---hCccccchhHhhcccCC-H--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 245556666666644 11333222222111111 1 1111111111111 22233444555555543333332222
Q ss_pred HhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-H
Q 007077 246 LFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDI--VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-F 322 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 322 (619)
++..... .+...+.+.... -.....|.. .++.-+...|...|++++|++++++.++. .|+. .
T Consensus 165 l~~~~~~-----------~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 165 LVEEYVN-----------SLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHHH-----------hhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 2222110 000000000000 000112233 34455677788888888888888888774 5653 4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----------hhH--
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----------ASW-- 390 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~-- 390 (619)
.|..-...+-+.|++.+|.+.++...+.. ..|..+-+-.+..+.++|++++|.+++......+. ..|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 67777788888888888888888888775 45677777778888888888888888887765531 123
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHhcc---C----cHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISG--GA---KPDDI----------TFIGVLSACSHG---G----LVDEGRRFFNTM 448 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~~----------~~~~ll~~~~~~---g----~~~~a~~~~~~~ 448 (619)
.....+|.+.|++..|+..|....+. .+ +-|-. +|..+++..-+. . -...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 23456788888888887776665432 11 22222 222222221111 0 112333444333
Q ss_pred HHhcCCCCCh-----------hHHHHHHHHH---HhcCCHHHHHHHHhh-----------C-CCCCCcccHHHHHHHHHH
Q 007077 449 TEVYQIQPKL-----------EHYGCLIDLL---GRAGLLDEAEELIRK-----------I-PNENNEIIVPLYGALLSA 502 (619)
Q Consensus 449 ~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~-~~~~~~~~~~~~~~l~~~ 502 (619)
.......... .--..+..-. .+...-+++...-.+ . ...+...+. .-+...
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~Gek 465 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEK 465 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHH
Confidence 3221000000 0000000000 111111111111100 0 001111110 011111
Q ss_pred HHH-cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 503 CRI-YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 503 ~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 223 33478899999999999999999999999999999999999887764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.1e-08 Score=95.25 Aligned_cols=231 Identities=13% Similarity=0.025 Sum_probs=156.1
Q ss_pred CChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 300 NRFDEAVALFREMQIIR-LKPD--KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
+..+.++..+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777766432 2232 2346666667788888888888888888765 556788899999999999999999
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007077 377 EIFYELRE--K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 377 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 453 (619)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998764 2 5678888888999999999999999999887 66543222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-ch
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN---NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS-SF 529 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~ 529 (619)
.+|+...+ .++..+......+++.+.+.+..... .+....+|..+...+...|++++|+..|+++.+.+|.+. ..
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34443222 33333332222233343333222111 122345689999999999999999999999999997544 33
Q ss_pred HHHHHHH
Q 007077 530 HTLLANI 536 (619)
Q Consensus 530 ~~~l~~~ 536 (619)
...++..
T Consensus 274 ~~~~~e~ 280 (296)
T PRK11189 274 RYALLEL 280 (296)
T ss_pred HHHHHHH
Confidence 3344443
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=2.3e-07 Score=91.77 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCC
Q 007077 324 LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNG 401 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g 401 (619)
|..+...|+..|+++.|.++|-+. ..++--|.+|.+.|+|+.|.++-++...| .+..|-+-..-+-.+|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 334444445555555554444321 12333444555555555555554444433 2233333334444455
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
++.+|.++|-... .|+. .+..|-+.|..+..+++.++- .|+ ..+-..+..-|...|++..|.+
T Consensus 839 kf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred chhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 5555544443221 2332 233444445444444443322 122 2233344455555566666555
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
-|-+.. + |.+-+..|...+-+++|-++
T Consensus 904 ~flea~------d---~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 904 HFLEAG------D---FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHhhh------h---HHHHHHHhhhhhhHHHHHHH
Confidence 554433 1 55555555555555555444
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=2.8e-08 Score=98.41 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCCcc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP------NENNEI 491 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~ 491 (619)
++..+...|...|++++|.+++++++... +..+. ...++.|...|.+.+.+.+|.++|.+.. ....+.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 44444445555555555555554443321 11111 2345556666666666666666665432 233444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+|..|...|...|+++.|+++.+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55578889999999999999999887774
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=2.6e-07 Score=92.30 Aligned_cols=436 Identities=14% Similarity=0.054 Sum_probs=231.8
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-cccH
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS---PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPD-NFTY 91 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~ 91 (619)
++.|+.+|..|.-+.. ++|+++.+-+.|++.-+ .....|+.+-..+...|.-..|..+++.-......|+ ...+
T Consensus 319 ~qnd~ai~d~Lt~al~--~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS--RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4578888888888887 88899888888886543 3445688888888888888888888887654432233 3334
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHh--CC--CCChhhHHHHHHHhHhcC-----------ChhHHHHHHccCCCC---
Q 007077 92 PFVFKAVG-WLGEVKKGEKVHGYVVKT--GL--EFDTYVCNSIMDMYGVLG-----------KICNVKKLFDEMPDK--- 152 (619)
Q Consensus 92 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~--- 152 (619)
-..-+.|. +.+.++++..+-.++... +. ......|..+.-+|...- ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 456677777766666652 11 122334444444443211 122334444443221
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
|+...-.+.--|+..++.+.|.+..++... .+-.-+...|..+.-.+...+++..|..+.+......+.|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 111111122223444555555555555544 3333344455555555555555555555555555444443333333333
Q ss_pred HHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREM 312 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 312 (619)
.-...++.++|......+. . +|+... .....++-...++....+
T Consensus 556 i~~~~~~~e~~l~t~~~~L-----------~-------------~we~~~------------~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL-----------A-------------LWEAEY------------GVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hhhhcccHHHHHHHHHHHH-----------H-------------HHHhhh------------hHhhhhhhhhhhhhhccc
Confidence 3333444444433222211 1 011000 000111111111111111
Q ss_pred HHcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC----
Q 007077 313 QIIRLKP--DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD---- 386 (619)
Q Consensus 313 ~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 386 (619)
.-.--.| ...++..+..-... +. ...+ .+..+..+.....++
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~--~~----------~~~~--------------------se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVAS--QL----------KSAG--------------------SELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred ccCcccccccchhhHHHHHHHHh--hh----------hhcc--------------------cccccCcccccCCCCchHH
Confidence 1000001 00111111111000 00 0000 000001111111111
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 007077 387 --AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYG 462 (619)
Q Consensus 387 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 462 (619)
...|......+.+.++.++|...+.+.... .|- ...|......+...|.+++|.+.|.... -+.|+ +....
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~ 722 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHH
Confidence 234566667777888888888777777654 343 3355555566677888888888887766 44565 66778
Q ss_pred HHHHHHHhcCCHHHHHH--HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 463 CLIDLLGRAGLLDEAEE--LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
++..++.+.|+..-|.. ++..+. +-++.+...|-.+...+.+.|+.+.|-..|.-+.++++.+|.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dal-r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDAL-RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88888988887777777 888877 446777778999999999999999999999999888877764
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.4e-07 Score=84.96 Aligned_cols=301 Identities=15% Similarity=0.072 Sum_probs=156.1
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHH---HHHHhcCCHHHHHHHHccCCCCChhhHHH---HHHHHHHcCC
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMV---SGYVNCGQLEKARDLFDRSPVRDIVLWTA---MINGYVQFNR 301 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~ 301 (619)
--+...+...|++..|+..|....+.|...|.++. ..|...|+-..|+.-+++....-+..+.+ ....+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 45566666677777777777776665555554443 34555555555555555544222222222 2234556666
Q ss_pred hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 302 FDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
+++|..-|+...+.....+. ..+..+. ..++ .......+..+...|+...|++..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~~e----------------~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LIQE----------------HWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hHHH----------------HHHHHHHHHHHhcCCchhhHHHHH
Confidence 66666666666554321110 0000000 0000 001111222333445555555555
Q ss_pred HhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 380 YELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 380 ~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
..+.+. |...+..-..+|...|.+..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.. .+.|
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---Kldp 254 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDP 254 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCc
Confidence 544432 44444445555555555555555544443331 1122344444444455555555544444333 3344
Q ss_pred ChhH----HHHH---------HHHHHhcCCHHHHHHHHhhCCC-CCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 457 KLEH----YGCL---------IDLLGRAGLLDEAEELIRKIPN-ENN--EIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 457 ~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
|... |-.+ +....+.++|.++++-.++... +|. +.....+..+-.++...|++.+|++...+++
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 4221 1110 1123355667777666665442 222 1121224444555667788888888888888
Q ss_pred ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 521 KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++|+|..++.--+.+|.-...+++|+.-+++..+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888765
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.1e-07 Score=82.26 Aligned_cols=385 Identities=12% Similarity=0.027 Sum_probs=206.4
Q ss_pred hHHHHHHHhHhcCChhHHHHHHccCCCC---CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhh
Q 007077 125 VCNSIMDMYGVLGKICNVKKLFDEMPDK---DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACT 201 (619)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 201 (619)
-+++++..+.+..++..|++++..-.++ +....+.+..+|....++..|-+.|+++.. ..|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrl------ 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRL------ 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHH------
Confidence 3455555566667777777776655443 334556666677777777777777777633 3344333321
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHHH--HHHHhcCCHHHHHHHH
Q 007077 202 ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSMV--SGYVNCGQLEKARDLF 278 (619)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~A~~~~ 278 (619)
--...+.+.+.+..|+++...|.+. +...-..-+ ......+++..+..+.
T Consensus 83 ---------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 83 ---------------------------YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ---------------------------HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 1122333445555566655555542 111111111 1122455666666666
Q ss_pred ccCCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh-
Q 007077 279 DRSPV-RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA- 356 (619)
Q Consensus 279 ~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 356 (619)
++.+. .+..+.+.......+.|+++.|++-|+...+-+--.....|+..+ +..+.++...|.....+++++|+...+
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 66653 344444444445556677777777777665543222334454444 334556677777777766666543221
Q ss_pred --------------------hHHHHHH-------HHHHhCCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhCCChH
Q 007077 357 --------------------VVATALI-------EMYAKCGLIEKALEIFYELREK-----DAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 357 --------------------~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 404 (619)
..-+.++ ..+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcc
Confidence 1112333 3456889999999999999854 778777664332 345566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhh
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG-RAGLLDEAEELIRK 483 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 483 (619)
+..+-+.-+.+... -...||..++-.||+..-++.|-.++-+-....-.-.+...|+ +++++. -.-..++|.+-++.
T Consensus 294 ~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred ccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 66666666665532 2356999999999999988888887754221100001222333 344443 34467777666554
Q ss_pred CCCCCCcccHHHHHHHHHHH-HHcCCHHHH----HHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 484 IPNENNEIIVPLYGALLSAC-RIYGNVDMG----EKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+... .... .-..-+..- .++.+-+++ .+-++...++- -.....-++.|.+..++.-+.+.|+.-.+
T Consensus 372 La~~-l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 372 LAGM-LTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHH-HHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 4311 0000 011111111 112221122 22233333221 11245667888999999999999988764
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.6e-06 Score=84.16 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=31.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
.+.|+.++|..+++++.+ -.++|..+...++.+|++. +++.|..+-..+.
T Consensus 469 lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 345777777777777765 2356666666777766653 4666666666654
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=5.8e-06 Score=83.24 Aligned_cols=239 Identities=12% Similarity=0.074 Sum_probs=119.2
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHC-C--------CCCCc
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRER-G--------VSPDN 88 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~p~~ 88 (619)
-|+.+-..++....+..-|+.+.|.+-.+.++... .|..|.+.|.+..+.+-|.--+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~--vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDS--VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhH--HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666665544447788888877777776653 3666777777766666555444443321 1 1122
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-CeecHHHHHHHHHcC
Q 007077 89 FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-DVVSWNVSISGHVKC 167 (619)
Q Consensus 89 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 167 (619)
.+=.-+.-.....|.+++|+.++.+..+ |..|-..|-..|.+++|.++-+.-..- =..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 1111222223456777777777777665 233445566667777776665532211 112444444444455
Q ss_pred CChhHHHHHHHHh----------HhcC--------CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 007077 168 MRFEDAVDVFRRM----------RQGC--------NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNA 229 (619)
Q Consensus 168 g~~~~A~~~~~~m----------~~~~--------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (619)
++.+.|++.|++- .... .-..|...|.-.....-..|+.+.|..++..+.. |-+
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs 943 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFS 943 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhh
Confidence 5666666555542 1100 0012333333333444556777777776665544 233
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 230 LLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
+++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444444444443321 22233333444444444444444444
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3e-07 Score=88.18 Aligned_cols=217 Identities=11% Similarity=0.030 Sum_probs=135.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----------hhHHHHH
Q 007077 325 VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----------ASWTSII 394 (619)
Q Consensus 325 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l~ 394 (619)
..+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+......-+...+... ..+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555556666666666555543 3444445555566666665555554444333211 1122234
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCC
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGL 473 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 473 (619)
.+|.+.++++.|+..|++.+.....|+..+ +....+++....+... -+.|... -...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888665544443321 2223344444433322 2234421 11222556778888
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..|+..+.+++.. +|.+...|..-.-+|.+.|.+..|+.-.+...+++|+....|..=+.++....+|++|.+.+.+.
T Consensus 374 y~~Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887743 56677778888888888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 007077 554 KEM 556 (619)
Q Consensus 554 ~~~ 556 (619)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 653
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1.9e-06 Score=85.43 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=227.7
Q ss_pred HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 007077 132 MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKE 211 (619)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 211 (619)
.+...|+++.|..-|-+.. ..-..|.+......|.+|+.+++.++. .+.....|..+..-|+..|+++.|.+
T Consensus 715 hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqd---qk~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD---QKTASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh---hccccccchHHHHHhccchhHHHHHH
Confidence 3445566666666554321 223345566778899999999998865 23345577888888999999999999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCC--chhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKN--VICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW 289 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (619)
+|... ..++..+.+|.+.|+++.|.++-.+...|. ...|-+-..-+-+.|++.+|+.++-.+..|+.
T Consensus 787 lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~--- 855 (1636)
T KOG3616|consen 787 LFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK--- 855 (1636)
T ss_pred HHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH---
Confidence 98653 345778999999999999999988877653 34566666667789999999999988888875
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 290 TAMINGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 290 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
.|..|-+.|..+..+++..+- .|+. .|...+..-+...|++..|...|-+.- -|.+-+++|.
T Consensus 856 --aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk 919 (1636)
T KOG3616|consen 856 --AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYK 919 (1636)
T ss_pred --HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhh
Confidence 467889999999998888754 2332 355666777788899999887765433 3567788898
Q ss_pred hCCCHHHHHHHHHhcCCCCh-----hhHH-------------------HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 368 KCGLIEKALEIFYELREKDA-----ASWT-------------------SIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~-----~~~~-------------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
..+-|++|.++-+.--..|. ..|. .-+.--+..+.++-|..+-+-..+.. .|..
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v- 997 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV- 997 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc-
Confidence 89999998888765332221 1111 11122234444555555444333321 2221
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-------------------HHHHHHhcCCHHHHHHHHhhC
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC-------------------LIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~ 484 (619)
...+..-+...|++++|-+.+-+.++.+ .-..+|.. -+.++.+..+++.|.++-+.-
T Consensus 998 -hlk~a~~ledegk~edaskhyveaikln---tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h 1073 (1636)
T KOG3616|consen 998 -HLKLAMFLEDEGKFEDASKHYVEAIKLN---TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH 1073 (1636)
T ss_pred -hhHHhhhhhhccchhhhhHhhHHHhhcc---cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh
Confidence 2223334556788888877766655421 11112221 123344444444444443322
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
. +...++ .+..-..+....|++.+|+.++-++ ..|+ ...+-|...+.|.+|+++.+
T Consensus 1074 ~-~~~l~d--v~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1074 C-EDLLAD--VLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred C-hhhhHH--HHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHH
Confidence 2 111111 2444445555667777777665322 1222 23344667778888777654
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=1e-07 Score=95.72 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHh
Q 007077 406 ALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY-------------QIQPKLE--HYGCLIDLLGR 470 (619)
Q Consensus 406 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~~ 470 (619)
+...+..+...|+++ +|..+-..|......+-...++....... .-+|... ++..+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 445556666677543 34444444554444444445554443321 1134433 34566788889
Q ss_pred cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 471 AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
.|++++|++++++... ..|..+..|..-...+.+.|++.+|.+.++.+..+++.|..+..-.+..+.+.|+.++|.+.+
T Consensus 207 ~g~~~~Al~~Id~aI~-htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIE-HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998883 355566778999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCC
Q 007077 551 QKMKEMGV 558 (619)
Q Consensus 551 ~~m~~~~~ 558 (619)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98876654
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.3e-05 Score=79.77 Aligned_cols=504 Identities=14% Similarity=0.128 Sum_probs=293.3
Q ss_pred HHHHHHHhccCCCCChhHHHHhhccCCC--CCc-----ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHH
Q 007077 23 LNKLMVFCTHPSHGNLLYAEKIFGSIQS--PCL-----LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVF 95 (619)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~a~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 95 (619)
...+.+.|. +.|-+..|++.+..+.. +.+ ..=..++. |.-.-.++.+++.++.|...+++.|..+...+.
T Consensus 609 ra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 556667777 88888888888876641 111 11112333 333346788888889998888888877776666
Q ss_pred HHHhccCChhHHHHHHHHHHHh-----------CCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-------------
Q 007077 96 KAVGWLGEVKKGEKVHGYVVKT-----------GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD------------- 151 (619)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 151 (619)
.-|+..=..+...++|+..... ++.-|+.+.-..|.+-|+.|++.+..++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666555555566666655431 2456677777889999999999988888765420
Q ss_pred ------C------------CeecH------HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHH------------
Q 007077 152 ------K------------DVVSW------NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVS------------ 195 (619)
Q Consensus 152 ------~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~------------ 195 (619)
| |.+.| -..|..|.+.=++...-.+...+.. +..+......
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChH
Confidence 1 11111 1123344443333333333333211 1222222222
Q ss_pred -HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH-HH---HhccC------CCCCc---------
Q 007077 196 -TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA-RE---LFDEM------PNKNV--------- 255 (619)
Q Consensus 196 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~---~~~~~------~~~~~--------- 255 (619)
+..-+-+.+++..-..+++..++....++.++|+|...|...++-.+- ++ .|+.. .++|.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 222233444555555566666666677888889988888765543221 11 01100 00110
Q ss_pred --------------hhHHHHHHHHHhcCCHHHHHHHHcc-----------C-----C-CCChhhHHHHHHHHHHcCChhH
Q 007077 256 --------------ICWTSMVSGYVNCGQLEKARDLFDR-----------S-----P-VRDIVLWTAMINGYVQFNRFDE 304 (619)
Q Consensus 256 --------------~~~~~li~~~~~~g~~~~A~~~~~~-----------~-----~-~~~~~~~~~li~~~~~~g~~~~ 304 (619)
..|....+.+.+..+.+-=.+++.+ . + ..|+..-+.-+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1122333333344443332222211 0 0 2255555666777888888888
Q ss_pred HHHHHHHHHHcCCCC-CHHHH-HHHHHHHHccCcHHHHHHHHHHHHHcC-----------------------CCCChhHH
Q 007077 305 AVALFREMQIIRLKP-DKFIL-VALLTGCAQLGALEQGKWIHGYINENR-----------------------ITVDAVVA 359 (619)
Q Consensus 305 A~~~~~~m~~~g~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~ 359 (619)
-++++++..-.+-.- ..... +.++-... ..+.....++..++-.-. +..+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 888888775322110 11111 11221111 112222222222221111 01111222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
+.|+. .-+.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22221 1233344444433332 4568999999999999999999887542 35678999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+-..++...+++ .-.|.+. +.|+-+|++.+++.+-++++. .|+..+ ...+.+-|...|.++.|.-+|.-.
T Consensus 1151 dLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVAN---IQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchh---HHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999888776 5566654 568999999999998777653 334444 788899999999999998888644
Q ss_pred hccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccC
Q 007077 520 EKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 520 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.-|..|+..+...|.+..|...-++......|+..
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 34788888899999999998888887776666654
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.1e-06 Score=90.23 Aligned_cols=539 Identities=12% Similarity=0.046 Sum_probs=275.9
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHhccCCCCChhHHHHhhcc---CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 6 QIQAQIFQIGLQQN-PETLNKLMVFCTHPSHGNLLYAEKIFGS---IQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 6 ~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
.+|..+....+.++ ...|..|-..|. ...+...|.+.|+. +.+.+..++....+.|.+..+++.|..+.-.--+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYr--d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYR--DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 44444444444444 356677777776 55577778888874 4567778888999999999999999888333222
Q ss_pred CCCCCCc--ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHH-
Q 007077 82 RGVSPDN--FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWN- 158 (619)
Q Consensus 82 ~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 158 (619)
.. +.-. ..|...--.+...++...+..-|+...+..+ .|...|..+..+|.++|++..|.++|.+...-++..+-
T Consensus 555 ka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 555 KA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 11 1011 1233333345577788888888888877443 46678889999999999999999999877654433222
Q ss_pred H--HHHHHHcCCChhHHHHHHHHhHhc-----CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH-------h-ccCC
Q 007077 159 V--SISGHVKCMRFEDAVDVFRRMRQG-----CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ-------E-LEFT 223 (619)
Q Consensus 159 ~--li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~-~~~~ 223 (619)
. ....-+..|.+++|++.+...... .+..--..++..+...+...|-...+..+++..++ . ...+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 1 123345678899998888776431 11111122333333333333333333333332222 1 1222
Q ss_pred hhHHHHHHHHH-------------------Hh----cCCh---h---hHHHHhccCCC--CCchhHHHHHHHHHh----c
Q 007077 224 PIMGNALLDMY-------------------CK----CGCL---S---EARELFDEMPN--KNVICWTSMVSGYVN----C 268 (619)
Q Consensus 224 ~~~~~~l~~~~-------------------~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~ 268 (619)
...+-.+.+++ .+ .+.. | -+.+.+-.-.+ .+..+|..++..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 22222111111 11 0000 0 00000000000 123344444433332 1
Q ss_pred ----CCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 269 ----GQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 269 ----g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
.+...|...+.+.. ..+...||.|.-. ...|.+.-|...|-+-.... +-+..+|..+...+.+..+++.|.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence 11223444443322 3344555555443 33455555555554433321 223335555555556666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-----C---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 342 WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR-----E---KDAASWTSIICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 413 (619)
..+....... |.+...|-.........|+.-++..+|..-. + ++..-|-+.......+|+.++-+...+++
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 6666665543 3344444444444445555555555554311 1 12233333333344555554444333332
Q ss_pred HHC--------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCHHHHHHH
Q 007077 414 ISG--------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC----LIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 414 ~~~--------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~ 480 (619)
... +-.|+ .+.|........+.+.+..|.....+.+.--...-+...|+. +...+...|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 11333 456666666666667666666665554432222334444442 34455566777777766
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.....+.+... ..+-+. ..-.++++++.+.|+++..+..++.. ....++.+...++..+.|...+-+...
T Consensus 1030 ~~~~~~evdEdi---~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDI---RGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHH---hhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 655443222222 222222 24567888889999888776655443 344556666677778888777766654
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=7.9e-07 Score=89.24 Aligned_cols=237 Identities=17% Similarity=0.172 Sum_probs=154.5
Q ss_pred CChhhHHHHHH--HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCC--------CCCh
Q 007077 121 FDTYVCNSIMD--MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNL--------MPDE 190 (619)
Q Consensus 121 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~p~~ 190 (619)
-|..|-..+++ .|...|++|.|.+-.+-+. +-..|..|.+.+.+.++.+-|.-.+..|....|. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 4677888888877766554 4467888888888888888888887777553332 122
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-CCchhHHHHHHHHHhcC
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN-KNVICWTSMVSGYVNCG 269 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g 269 (619)
.+-.-+.-.....|.+++|..++....+ |..|-..|-..|.+++|.++-+.-.+ .=..||.....-+-..+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222222334577888999988888766 24455677888999999887654333 12236777777777888
Q ss_pred CHHHHHHHHccCCCC-----------------------ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 007077 270 QLEKARDLFDRSPVR-----------------------DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVA 326 (619)
Q Consensus 270 ~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 326 (619)
+.+.|++.|++...+ |...|......+-..|+.+.|+.+|....+ |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 899998888765422 334444445555556667777776665543 344
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 007077 327 LLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR 383 (619)
Q Consensus 327 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 383 (619)
+++..|-.|+.++|.++-++ ..|......|...|...|++.+|..+|-+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55556666777776666543 2345556667777777777777777776654
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=4.9e-08 Score=91.24 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATALIEMY 366 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 366 (619)
....+.+++...|+++.++. +..... .|.......+...+....+.+.+..-+......... .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 33445566666776654432 222222 555544444444443334444444444333322222 2333333344567
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHHH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS----HGGLVDEGR 442 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~ 442 (619)
...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ....+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999999888775 56777777888999999999999999999865 4443 4444554443 234688999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhc
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV-DMGEKLAALLEK 521 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 521 (619)
.+|+++.. ...+++.+.+.+..+....|++++|.+++.+... .++.+..++..++......|+. +.+.+.+.++..
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~-~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE-KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC-C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999876 4567888889999999999999999999988773 3555666777788888888887 778889999988
Q ss_pred cCCCCcc
Q 007077 522 IESKDSS 528 (619)
Q Consensus 522 ~~p~~~~ 528 (619)
..|+++.
T Consensus 265 ~~p~h~~ 271 (290)
T PF04733_consen 265 SNPNHPL 271 (290)
T ss_dssp HTTTSHH
T ss_pred hCCCChH
Confidence 8888775
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=3e-07 Score=78.65 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
..|....-+|..|++++|...|++...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 333333334444444444444444433
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6.5e-06 Score=79.32 Aligned_cols=437 Identities=12% Similarity=-0.012 Sum_probs=247.0
Q ss_pred HHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhHHHHHHHhHhcCCh
Q 007077 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDT-YVCNSIMDMYGVLGKI 139 (619)
Q Consensus 61 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~ 139 (619)
.+.+..|+++.|+..|.+.+... |+|.+-|..-..++++.|++++|.+=-...++ +.|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45667889999999998887764 44777788888888888888888776655555 44654 3677777777778888
Q ss_pred hHHHHHHccCCCC---CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 007077 140 CNVKKLFDEMPDK---DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYI 216 (619)
Q Consensus 140 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (619)
++|...|.+-.+. |...++.+..++ ..+.+. +.. -.++..+..+..--... .-.....+..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~----~~~p~~~~~l~~~p~t~--~~~~~~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQL----FTKPYFHEKLANLPLTN--YSLSDPAYVKI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhh----ccCcHHHHHhhcChhhh--hhhccHHHHHH
Confidence 8888888877653 334555555555 111111 111 00111111111000000 00000111111
Q ss_pred HHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHH-hcCCHHHHHHHHccCCCC-----------
Q 007077 217 NQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYV-NCGQLEKARDLFDRSPVR----------- 284 (619)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~----------- 284 (619)
.+.++.++... ..|..-.++..|.-.+.....+ ....--.... ...... .....+
T Consensus 152 l~~~~~~p~~l----~~~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 152 LEIIQKNPTSL----KLYLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEER 218 (539)
T ss_pred HHHhhcCcHhh----hcccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHH
Confidence 11111111111 1111111111111111111000 0000000000 000000 000000
Q ss_pred ----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-----
Q 007077 285 ----DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD----- 355 (619)
Q Consensus 285 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 355 (619)
-..-...+.+...+..+++.|++.+....... -+..-++....++...|........-....+.|...-
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH
Confidence 01234456677777788888888888777643 3334455556667777776666555555544442110
Q ss_pred -hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007077 356 -AVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACS 433 (619)
Q Consensus 356 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 433 (619)
......+..+|.+.++++.|...|.+....... -....+....++++...+...-. .|... -...-...+.
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHH
Confidence 011122344677788899999999885532111 11223334456666655554443 44432 2223356778
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+.|++..|...|.+++.. .+.|...|..-.-+|.+.|.+..|++-.+.... -++.....|.--..++....+++.|.
T Consensus 370 k~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred hccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999874 356688999999999999999999998777763 36666556666667777888999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+.|++..+.+|.+..+...+.+++...
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999988777777766653
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=3.5e-06 Score=86.65 Aligned_cols=441 Identities=12% Similarity=0.040 Sum_probs=261.2
Q ss_pred hhHHHHHHHHHHHhCCCCC-hhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHH
Q 007077 104 VKKGEKVHGYVVKTGLEFD-TYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRR 179 (619)
Q Consensus 104 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 179 (619)
...+...|-+..+ +.++ ...|..|...|+...+...|.+.|+..-+ .|..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4444444444333 3333 24678888888888888888888887665 3556778888888888888888888443
Q ss_pred hHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch-hH
Q 007077 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI-CW 258 (619)
Q Consensus 180 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 258 (619)
.-+......-...|...--.+...++...+..-++...+..|.|...+..++.+|..+|++..|.++|++...-++. .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 32211111111223333334567778888888888888878888888888888999999999898888777652222 22
Q ss_pred HHH--HHHHHhcCCHHHHHHHHccCCCC----------ChhhHHHHHHHHHHcCChhHHHHHHHH-------HHHcCCCC
Q 007077 259 TSM--VSGYVNCGQLEKARDLFDRSPVR----------DIVLWTAMINGYVQFNRFDEAVALFRE-------MQIIRLKP 319 (619)
Q Consensus 259 ~~l--i~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g~~p 319 (619)
... .-..+..|.+.+|...+..+... -..++-.+...+...|-..+|.+.++. ........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 222 23345667777777766544311 111222222222222322222222222 21111111
Q ss_pred CHHHHHHHHHH-----------------------HHccCcH---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 007077 320 DKFILVALLTG-----------------------CAQLGAL---E---QGKWIHGYINENRITVDAVVATALIEMYAK-- 368 (619)
Q Consensus 320 ~~~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 368 (619)
+...+-.+-.+ ....+.. + -+.+.+-. ......+...|..|+..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 11111111111 1111111 1 01111111 11112234445445444433
Q ss_pred --CC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 007077 369 --CG----LIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLV 438 (619)
Q Consensus 369 --~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 438 (619)
+| +...|...+.+.. ..+...|+.|.-. ...|++.-|.-.|-+-... .|. ..+|..+.-.|....++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence 22 2346677776654 3477888888766 6667777777777766655 444 45888888888899999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKI----PNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+.|...|...+. +.|+ ...|-.........|+.-++..+|..- ..++..+....|.....--...|++++-+
T Consensus 867 E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 867 EHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 999999998874 4454 555655555566788888999888751 13445555444555444556667766655
Q ss_pred HHHH----------HHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 514 KLAA----------LLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 514 ~~~~----------~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...+ +..+..|+...+|.+.+..+.+.+.+.+|.+...+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5444 4467889999999999999999999999988877764
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=9.7e-08 Score=89.22 Aligned_cols=246 Identities=12% Similarity=0.043 Sum_probs=165.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
-+.-.|++..++.-.+ .....-..+.....-+.+++...|+.+.+ ...+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445688888886665 22221122333555677888888887654 33443333 5666666555555544456677
Q ss_pred HHHHHHhcCC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 375 ALEIFYELRE-K----DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 375 A~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
+..-+++... . +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777765542 2 2222222334566789999999988652 345666777889999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 450 EVYQIQPKLEHYGCLIDLL----GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+ +..|. +...++.++ .-.+.+.+|..+|+++... .++++.+.+.+..++...|++++|+++++++.+.+|.
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4 44553 333344433 3334799999999998744 5567778999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCCh-HHHHHHHHHHHhC
Q 007077 526 DSSFHTLLANIYASANRW-EDVTNVRQKMKEM 556 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 556 (619)
++.+...++-+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999998 6678888888763
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=9.3e-08 Score=92.44 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=174.9
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHH
Q 007077 332 AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
.+.|++..|.-.|+..++.. |.+...|..|.......++-..|+..+.+..+- |....-.|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666665554 556666777777777777767777777666543 45566666677777777778888
Q ss_pred HHHHHHHCCCCCCHHHHHH--------HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 409 LFSQMISGGAKPDDITFIG--------VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~--------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
.++.-+... |.-..... .-..+..........++|-.+....+..+|..+...|.-.|--.|++++|++.
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 777765542 11100000 00122223334455666666655546567888999999999999999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
|+.+.. ..|.+..+||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+-......-..
T Consensus 453 f~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 453 FEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 999883 3566677799999999999999999999999999999999999999999999999999999988876532110
Q ss_pred cCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 561 VPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
.. ..+..++ ++.++..|......+.+.+
T Consensus 532 ~~---------------~~~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 532 RN---------------HNKAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cc---------------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence 00 0001122 5778888876555555444
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=5e-06 Score=82.26 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC---------CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIES---------KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666666666666665533211 12333456666777888888888887777643
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=8.4e-06 Score=73.87 Aligned_cols=316 Identities=13% Similarity=0.032 Sum_probs=204.2
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchhH-HHHHHHHHh
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVICW-TSMVSGYVN 267 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~ 267 (619)
.-...+-..+...|++..|..-+...++..|.+-.++-.-...|...|+-..|+.-|.++.+ ||...- -.-...+.+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 33445556667777787777777777766565555666667789999999999988888876 554332 223466889
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 007077 268 CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (619)
.|.+++|..-|+.+...++.- +....++.+ +...+++. .....+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999998876443310 000111111 11111111 1222333445566777777777776
Q ss_pred HHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
++.. +.+...+..-..+|...|++..|+.-++... ..+.....-+-..+-..|+.+.++...++.++. .||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 6653 5667777777777777777777776665443 345566666666667777777777777777765 666431
Q ss_pred -H---HHH---H------HHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 425 -F---IGV---L------SACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 425 -~---~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
| -.+ . ......++|.++.+-.+...+. .|. ...+..+-.++...|++-+|++.-.++..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 1 111 0 1123456777777777776643 344 23345566778888999999998888773
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
-++.++.++.--..+|.-...++.|+.-|+++.+.+|++..+-
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3555566677778888888899999999999999999887643
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=7.6e-07 Score=82.15 Aligned_cols=179 Identities=9% Similarity=-0.040 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----H
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK---DA---ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI----T 424 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 424 (619)
....+..+...+...|++++|...|+++... +. .++..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4455666677777778888888777766532 11 35566777777778888888888877765 33321 3
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 425 FIGVLSACSHG--------GLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 425 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
+..+..++... |+.+.|.+.++.+... .|+. ..+..+..... ..... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~--------------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL--------------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH--------------HHH
Confidence 44444444433 6677777777777654 2432 22221111100 00000 001
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
...+...+...|++++|...++++.+..|+++ .++..++.++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23556678899999999999999999887654 57889999999999999999999888654
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.00014 Score=70.39 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=234.8
Q ss_pred CCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHH
Q 007077 17 QQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPF 93 (619)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 93 (619)
|-|...|+.||+-+. ...++++++.++++. +.....|..-|..-.+..+++....+|.+.+..- .+...|..
T Consensus 17 P~di~sw~~lire~q---t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ---TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 567899999999885 449999999999885 4466789999999999999999999999988753 35666666
Q ss_pred HHHHHhc-cCChhHH----HHHHHHH-HHhCCCCCh-hhHHHHHHHh---------HhcCChhHHHHHHccCCC-C----
Q 007077 94 VFKAVGW-LGEVKKG----EKVHGYV-VKTGLEFDT-YVCNSIMDMY---------GVLGKICNVKKLFDEMPD-K---- 152 (619)
Q Consensus 94 ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~-~---- 152 (619)
-+.--.+ .+..... .+.|+.. .+.|+++-. ..|+..+..+ ....+++..+++++++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6654432 2333222 2333333 345654433 3566665543 233467778888888763 2
Q ss_pred -----CeecHHHHHHHHH-------cCCChhHHHHHHHHhHh-cCCCC------CChhh---------HHHHHHHhhcCC
Q 007077 153 -----DVVSWNVSISGHV-------KCMRFEDAVDVFRRMRQ-GCNLM------PDEGT---------VVSTLSACTALK 204 (619)
Q Consensus 153 -----~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~-~~~~~------p~~~~---------~~~ll~~~~~~~ 204 (619)
|-..|..=|.... +...+-.|.++++++.. ..|.. |...| |..+|.--...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 2122222222111 23345566666666532 01222 11111 111111100000
Q ss_pred ------Ch--HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCC------
Q 007077 205 ------NL--ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQ------ 270 (619)
Q Consensus 205 ------~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------ 270 (619)
.. ....-++++....+...+.+|- ++-..+... -+.+...|+
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy-------------~~s~yl~~~-----------s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWY-------------DYSMYLIEI-----------SDLLTEKGDVPDAKS 307 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHH-------------HHHHHHHHh-----------hHHHHHhcccccchh
Confidence 00 0011111221111111111111 111111110 011222222
Q ss_pred -HHHHHHHHccCCC----CChhhHHHHHHHHHH---cCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 271 -LEKARDLFDRSPV----RDIVLWTAMINGYVQ---FNRFDEAVALFREMQIIR-LKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 271 -~~~A~~~~~~~~~----~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
-+++.+++++... .+...|..+...--. .+..+.....++++...- ..|+ .+|...++...+..-++.|+
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHH
Confidence 2333444443321 133333333322111 113555666666665432 2333 46777777777888888888
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007077 342 WIHGYINENRITV-DAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGG 417 (619)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 417 (619)
.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+.-.+. ++.--...++-+...++-..+..+|++.+..+
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 8998888877666 77778888887764 6778888888865432 33344556677777788888888888888776
Q ss_pred CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCC
Q 007077 418 AKPDD--ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ--IQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 418 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 473 (619)
+.|+. ..|..+|.--+.-|++..+.++-+++...+. ..|....-..+++.|.-.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 66664 4788888777788888888877777665443 23332333444555544443
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00038 Score=72.35 Aligned_cols=439 Identities=14% Similarity=0.078 Sum_probs=212.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChh-HHHH---HHH------HHHHh-------
Q 007077 55 AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVK-KGEK---VHG------YVVKT------- 117 (619)
Q Consensus 55 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~---~~~------~~~~~------- 117 (619)
.-+.|..-.-+.++..--+..++.....|.. |..+++++.+.|...++-. .-.+ .++ ...++
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3445566666677777777788888888765 7788888888776544332 2111 111 11111
Q ss_pred ----CC--------CCChhhHHHHHHHhHhcCChhHHHHHHccC----------------C-CCCeecHHHHHHHHHcCC
Q 007077 118 ----GL--------EFDTYVCNSIMDMYGVLGKICNVKKLFDEM----------------P-DKDVVSWNVSISGHVKCM 168 (619)
Q Consensus 118 ----g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----------------~-~~~~~~~~~li~~~~~~g 168 (619)
|. ......|..+.+-+.+..|.+-=.+++.+- + ..|+...+.-+.++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 10 000112222222222333333222222111 0 134444555566666666
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
-+.+-+++++.+.-....-........++-.-+-.-+.....+..+.+..-.. -.+......++-+++|..+|+
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa------~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA------PDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc------hhHHHHHhhhhHHHHHHHHHH
Confidence 66666666666543111100111111111111111122222222222211111 123344455566677777776
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007077 249 EMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALL 328 (619)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 328 (619)
+..- +....+.||. .-+.++.|.+.-++...| ..|..+..+-.+.|...+|++-|-+. -|...|..++
T Consensus 1073 kf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi 1140 (1666)
T KOG0985|consen 1073 KFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVI 1140 (1666)
T ss_pred Hhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHH
Confidence 5431 1111122221 335566666665555543 45777777777778877777776533 2445677778
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 007077 329 TGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
+.+.+.|.+++-...+....+..-.|.. -+.|+-+|++.+++.+-++++. .||......+.+-|...|.++.|.-
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHH
Confidence 8888888888877777777666544443 3567777887777766655532 3444444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 409 LFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
+|... .-|..+...+...|.+..|...-++. .+..+|..+..+|...+.+.-| +|..-.
T Consensus 1216 ~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1216 LYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred HHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence 44422 12334444444445444444332211 2334455444444444333322 122111
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
......-..-++.-|...|-+++-+.+++...+++..+...+..|+-.|.
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 22222224445555555555555555555555555555554554444443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=3.1e-05 Score=87.06 Aligned_cols=324 Identities=13% Similarity=0.017 Sum_probs=196.7
Q ss_pred HHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCC----CC----C--h--hhHHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFDRSP----VR----D--I--VLWTAMINGY 296 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~ 296 (619)
.....|+++.+..+++.+.. .+..........+...|++++|...+.... .. + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34556777777777766632 222223334445556778888777665321 11 1 1 1122233445
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDK----FILVALLTGCAQLGALEQGKWIHGYINENRI---TV--DAVVATALIEMYA 367 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 367 (619)
...|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887653111121 2334455566778999998888877654211 11 1234455667788
Q ss_pred hCCCHHHHHHHHHhcCCC-------C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREK-------D----AASWTSIICGLAMNGKINKALELFSQMISGG--AKPD--DITFIGVLSAC 432 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~-------~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~ 432 (619)
..|++++|...+++.... + ...+..+...+...|++++|...+++..... ..+. ..++..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998887765421 1 1223445566677899999999888875531 1122 22444455667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCCccc---HHHHHHHHHHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHY-----GCLIDLLGRAGLLDEAEELIRKIPNENNEII---VPLYGALLSACR 504 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 504 (619)
...|+.+.|...++..............+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999998888875431111111111 1122444568899999999877653211111 111345666788
Q ss_pred HcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 505 IYGNVDMGEKLAALLEKIES------KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..|++++|...++++..... ....++..++.+|.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888865421 22335677888899999999999999888753
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=5.9e-07 Score=79.25 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=113.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776544433221 11 0122356677777777777653 35668899999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGN--VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
+++|...+++... -.+.+...+..+..+ +...|+ .++|.++++++.+.+|+++.++..++..+.+.|++++|...+
T Consensus 89 ~~~A~~a~~~Al~-l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQ-LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998873 244455568888876 467777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 007077 551 QKMKEMG 557 (619)
Q Consensus 551 ~~m~~~~ 557 (619)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998744
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.1e-05 Score=77.76 Aligned_cols=268 Identities=13% Similarity=0.038 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHH-HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH--
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIR-LKPDKFIL-VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA-- 361 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 361 (619)
...|..+...+...|+.+.+...+....+.. ..++.... ......+...|+++.+..+++.+.+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456666666667777777766666654332 12232211 122234456788888888888877653 444444431
Q ss_pred -HHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 007077 362 -LIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGG 436 (619)
Q Consensus 362 -l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 436 (619)
........+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 2222223455666666666533332 234445567888999999999999999987 555 456777888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-cccHHHH-H--HHHHHHHHcCCHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKL--EHYGCLIDLLGRAGLLDEAEELIRKIPNENN-EIIVPLY-G--ALLSACRIYGNVD 510 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~ 510 (619)
++++|..+++.........|+. ..|..+...+...|++++|..++++...... ....... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 3456788899999999999999998752211 2221111 1 2333344555444
Q ss_pred HHHHH---HHHHhccCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 511 MGEKL---AALLEKIESK--DSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 511 ~a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.+.+. ........|. ........+.++...|+.++|.+.++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44433 2222111122 1222246777888999999999999998753
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.4e-06 Score=74.85 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=157.6
Q ss_pred HHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCcH
Q 007077 262 VSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVA-LLTGCAQLGAL 337 (619)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~ 337 (619)
+..+.+..++++|++++..-. +++....+.+..+|....++..|...|+++-. ..|....|.. -..++.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhccc
Confidence 333344444444444443222 22344455566666666666666666666654 2343333322 12344455555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALI----EMYAKCGLIEKALEIFYELR-EKDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
..|..+...+.+. + ...+..+ ......+++..+..++++.. +.+..+.+.......+.|+++.|++-|+.
T Consensus 95 ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 5565555554332 1 1111111 11234556666666666666 34555555555555677777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-------------Ch---------------hHHHHH
Q 007077 413 MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-------------KL---------------EHYGCL 464 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~---------------~~~~~l 464 (619)
..+-|---....|+..+..| +.|+++.|.+...+++++ |++. |+ ..+|.-
T Consensus 170 AlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 66543233334555544333 456677777777666654 4321 11 122223
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
...+.+.|+++.|.+.+..|+.+ ....++.|...+.-. ...|++..+.+-+.-+.++.|-.+.++..+.-+|++..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 33456789999999999999832 122233335444322 2356677777777777888888788888888899999999
Q ss_pred HHHHHHHHH
Q 007077 544 EDVTNVRQK 552 (619)
Q Consensus 544 ~~A~~~~~~ 552 (619)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888877754
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.2e-06 Score=92.95 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=163.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELREK--------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
|.....|-..+......++.++|.++++++... -...|.++++.-...|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556677888888888889999999998887642 2457888888888888888899999998875 222346
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSAC 503 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~ 503 (619)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.++. .-|.........-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888889999999999999999998765 556788889999999999899999988766 223333444466666777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
.+.|+.++++.+|+....-.|.....|..+++.-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998888999999999999999999999999886654
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=5.6e-05 Score=84.94 Aligned_cols=404 Identities=10% Similarity=-0.008 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHhCCC--C-C----hhhHHHHHHHhHhc----CChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHH
Q 007077 105 KKGEKVHGYVVKTGLE--F-D----TYVCNSIMDMYGVL----GKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDA 173 (619)
Q Consensus 105 ~~a~~~~~~~~~~g~~--~-~----~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 173 (619)
+.+..+++.+.+.|+. + + .+.|+.++.-+.+. .+.+....+ +......+...|++.+|
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~A 360 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSEA 360 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHHH
Confidence 3456777777777751 1 1 24456666554432 122222222 22334455666777766
Q ss_pred HHHHHHhHhcCCCCCChhhHHHHH----HHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 174 VDVFRRMRQGCNLMPDEGTVVSTL----SACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 174 ~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
...+..... ......++ ......|..+....++..+... ...++.........+...|++++|...+.
T Consensus 361 l~~a~~a~d-------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~ 433 (903)
T PRK04841 361 IHHALAAGD-------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLA 433 (903)
T ss_pred HHHHHHCCC-------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHH
Confidence 655444311 11111111 2233456666666665554222 22333344445555667788888877776
Q ss_pred cCCC----CC---c---h--hHHHHHHHHHhcCCHHHHHHHHccCC----CCCh----hhHHHHHHHHHHcCChhHHHHH
Q 007077 249 EMPN----KN---V---I--CWTSMVSGYVNCGQLEKARDLFDRSP----VRDI----VLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 249 ~~~~----~~---~---~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~ 308 (619)
.... .+ . . ....+...+...|++++|...+++.. ..+. ...+.+...+...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5422 11 1 1 11222344557888888888776532 1221 2445666777889999999999
Q ss_pred HHHHHHcCC---CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhCCCHHHHH
Q 007077 309 FREMQIIRL---KP--DKFILVALLTGCAQLGALEQGKWIHGYINEN----RITV---DAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 309 ~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
+.+.....- .+ ...++..+...+...|+++.|...+...... +... ....+..+...+...|++++|.
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 988754211 11 1234455666778899999999888776542 2211 2233445666777889999999
Q ss_pred HHHHhcCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhccCcHHHHH
Q 007077 377 EIFYELREK--------DAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITF-----IGVLSACSHGGLVDEGR 442 (619)
Q Consensus 377 ~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~ 442 (619)
..+.+.... ....+..+...+...|++++|...+++........ ....+ ...+..+...|+.+.|.
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 888876421 12344456667889999999999998875421111 11111 11123345578999999
Q ss_pred HHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCcc-cHHHHHHHHHHHHHcCCHHHHHH
Q 007077 443 RFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEI-IVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.++...... ..... ...+..+..++...|++++|...+++... .+... ...+...+..++...|+.++|..
T Consensus 674 ~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 674 NWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 987765431 11111 11134567788899999999999987652 12221 23346666778899999999999
Q ss_pred HHHHHhccCCCCc
Q 007077 515 LAALLEKIESKDS 527 (619)
Q Consensus 515 ~~~~~~~~~p~~~ 527 (619)
.+.++.++.....
T Consensus 753 ~L~~Al~la~~~g 765 (903)
T PRK04841 753 VLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCccc
Confidence 9999987775543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=6.7e-07 Score=74.57 Aligned_cols=94 Identities=5% Similarity=-0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+..+...+...|++++|...|+... .-++.+...|..+..++...|++++|+..|+++.+++|+++.++..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555556666666666666555 223444445666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHh
Q 007077 541 NRWEDVTNVRQKMKE 555 (619)
Q Consensus 541 g~~~~A~~~~~~m~~ 555 (619)
|++++|...+++...
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=5.3e-07 Score=75.18 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=100.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
..+|++.++. .|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++...
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666655 5654 445667778899999999999998753 244578888999999999999999999998883
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.++.+...+..+..++...|++++|+..++++.++.|+++..+...+.+..
T Consensus 87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 355566669999999999999999999999999999999998877776544
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=3.7e-08 Score=58.12 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=24.5
Q ss_pred CCCCChhhHHHHHHHhHhcCChhHHHHHHccCC
Q 007077 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP 150 (619)
Q Consensus 118 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (619)
|+.||..+||.||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.1e-06 Score=78.05 Aligned_cols=184 Identities=12% Similarity=0.011 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Chh---h
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA---VVATALIEMYAKCGLIEKALEIFYELREK---DAA---S 389 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~ 389 (619)
.....+......+...|+++.|...++.+.+.. +.++ ..+..+..+|...|++++|...|+++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888999999999999999988764 2222 46677889999999999999999998643 222 4
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAMN--------GKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
+..+..++... |++++|.+.|+++... .|+.. ....+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55566666654 7899999999999987 66643 2221111100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE-N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
...+...|.+.|++++|+..+++.... | .+.....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999999887632 2 233456788999999999999999999888876655
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2e-06 Score=85.67 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
+.+|-...-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+-.+. +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556667777788888888888888764 46777777888888888888877777774 777777777777
Q ss_pred HHhccCcHHHHHHHHHHhHHh--c-----------------------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 431 ACSHGGLVDEGRRFFNTMTEV--Y-----------------------QI-QPKLEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~--~-----------------------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
..-...-+++|.++.+....+ . .+ +....+|..+.-+..+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 665555566666655543321 0 00 111234444444444555555555555444
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
. ..++.....||.+-.+|.+.|+-.+|...++++.+-+-.+..+|....-+..+-|.|++|.+.+.++.+
T Consensus 546 v-tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 V-TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred h-hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 4 223333334555555555555555555555555554444444444444444455555555555555543
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=3.9e-06 Score=73.60 Aligned_cols=128 Identities=14% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
..+-..+...|+-+....+...... ..+.|......++....+.|++.+|...|++.. .+.+++...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHH
Confidence 3344455555555555555554332 223334444456666666666666666666665 3455555566666666666
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.|++++|...|.++.++.|+++.+++.|+..|.-.|+++.|..++......
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666666666665543
No 116
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=2e-05 Score=74.89 Aligned_cols=184 Identities=11% Similarity=-0.020 Sum_probs=108.7
Q ss_pred HHHhCC-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 365 MYAKCG-LIEKALEIFYELREK---DAASWTSIICGLAMNGKI--NKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 365 ~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++++. .|. ..+|.....++...|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhh
Confidence 333444 345555555554422 334455444444444442 5566666666655 343 4466666666666677
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc----
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GL----LDEAEELIRKIPNENNEIIVPLYGALLSACRIY---- 506 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 506 (619)
++++++.++++++. -+-+...|+....++.+. |. .++++++..++.. -++.+...|+.+...+...
T Consensus 158 ~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~-~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL-ANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH-hCCCCcCHHHHHHHHHhcCCccc
Confidence 77777777777653 123345555555444433 22 2456666645441 1333334488777777663
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC------------------ChHHHHHHHHHH
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN------------------RWEDVTNVRQKM 553 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 553 (619)
++..+|.+.+.++...+|.++.+...|+++|+... ..++|.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 44567888888888888999988899999998642 236677777777
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=3.6e-06 Score=83.93 Aligned_cols=215 Identities=14% Similarity=0.084 Sum_probs=171.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
-..+...+...|-...|+.+|++.. .+..++.+|+..|+..+|..+..+..+ -+|++..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3456677888899999999998763 367788889999999999998888777 37899999999888888
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 369 CGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+. .|- ..+|..+..+..+.++++.|.+.|..
T Consensus 470 ~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred hHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88889999998876543 2222222234579999999999987765 444 45888888888899999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 448 MTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 448 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
... ..|| ...||.+-.+|.+.|+-.+|...+.+..+.. ..+...|...+-...+-|.++.|++.+.++..+.
T Consensus 545 cvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 545 CVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred Hhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 874 3555 7899999999999999999999999988543 3444458888888899999999999999986544
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=5.5e-06 Score=80.53 Aligned_cols=249 Identities=14% Similarity=0.053 Sum_probs=171.4
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
-+.+.|+..+|.-.|+..++.. +-+...|..|....+..++-..|+..+.+..+.. +.+..+..+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888776653 2244467777777777777777888888877765 5567777888888888888888
Q ss_pred HHHHHHhcCCCChh-hHHHHH---------HHHHhCCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 375 ALEIFYELREKDAA-SWTSII---------CGLAMNGKINKALELFSQMI-SGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 375 A~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
|++.|+......+. .|.... ..+..........++|-++. ..+..+|......|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 88888775321100 000000 11122222344555555554 45544666677777777888999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 444 FFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 444 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.|+.+.. ++|+ ..+||.|...++...+.++|+..|++... -.|..+..+..|.-+|...|.+++|.+.|-.++.+
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999885 3554 78899999999999999999999999872 23333444778888999999999999998888765
Q ss_pred CCC----------CcchHHHHHHHHHhCCChHHHHHH
Q 007077 523 ESK----------DSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 523 ~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
.+. +..+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 544 123566666667777776644443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=7.3e-06 Score=85.84 Aligned_cols=141 Identities=10% Similarity=0.033 Sum_probs=114.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
++..+..|.....+.|.+++|..+++...+. .||.. ....+...+.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 5778888888899999999999999999887 88854 6777788888999999999999888753 444 667777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
+..++.+.|++++|.++|+++.. +.+....++..+..++...|+.++|...|+++.+...+-...|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888899999999999999885 455556678888888999999999999999998776555444443
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=1.7e-05 Score=84.71 Aligned_cols=227 Identities=14% Similarity=0.132 Sum_probs=158.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR 284 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 284 (619)
|++++...|.+...|-..|......++.++|++++++... .-...|.++++.-..-|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 3444445666677777777788888888888888777654 12335777777777777777777777776543
Q ss_pred -C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHH
Q 007077 285 -D-IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATA 361 (619)
Q Consensus 285 -~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 361 (619)
| ...|..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+..+-+.|..++.++++.-.. .......-
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2 356777888888888888888888888664 2344556777778888888888888888877764211 24455566
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccC
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLSACSHGG 436 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g 436 (619)
.+.+-.+.|+.+.+..+|+..... -...|+..++.-.++|+.+.+..+|++.+..++.|-. +.|...+..--..|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 677777888888888888876632 4667888888888888888888888888888777654 34455554444445
Q ss_pred cHHH
Q 007077 437 LVDE 440 (619)
Q Consensus 437 ~~~~ 440 (619)
+-..
T Consensus 1686 de~~ 1689 (1710)
T KOG1070|consen 1686 DEKN 1689 (1710)
T ss_pred chhh
Confidence 4443
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=6.4e-06 Score=67.32 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
+......+...+...|++++|..+|+-... -++.+...|..|..+|...|++++|+..|.++..++|+++.++..++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI-YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 355566677788899999999999998773 3556666799999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 007077 537 YASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLD 602 (619)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 602 (619)
|...|+.+.|.+.|+......- .+|+...+......+...+.+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999998876210 256666666665555555443
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=2.2e-07 Score=54.82 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=2.1e-05 Score=69.51 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
+-.|...|+++....-.+.+..+. ..+...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777766544443322211 01123566788888888877762 334568888888899999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLL-GRAGL--LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++... .++.+...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALA-LDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988763 234577778888764 67776 5899999998883 35555667888888999999999999999999
Q ss_pred hccCCCCcchH
Q 007077 520 EKIESKDSSFH 530 (619)
Q Consensus 520 ~~~~p~~~~~~ 530 (619)
.++.|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998877633
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=2.7e-05 Score=81.71 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=119.5
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELRE--K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFI 426 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 426 (619)
..+.++..+..|.......|..++|..+++.+.+ | +...+..++..+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3567788999999999999999999999999874 3 5677888999999999999999999999988 78765 556
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
.+..++.+.|++++|..+|+++... .+-+...+..+...+.+.|+.++|...|++.... ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 6667888999999999999999863 2344788999999999999999999999998733 222223455554
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=4e-05 Score=73.42 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=115.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
....+....-.+...|++++|+..++.++.. .|+...|..+. ..+...++.++|.+.++.+... .|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHH
Confidence 3444444555566788999999999998887 78876665554 6788899999999999998854 566 566777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+..+|.+.|++.+|+.++++... .++.++..|..|..+|...|+..++... .+..|...|+|
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~ 441 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRL 441 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCH
Confidence 88899999999999999988773 3444555699999999999988777654 45567888999
Q ss_pred HHHHHHHHHHHhCC
Q 007077 544 EDVTNVRQKMKEMG 557 (619)
Q Consensus 544 ~~A~~~~~~m~~~~ 557 (619)
++|...+...++..
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888754
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=4.3e-06 Score=69.43 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
......+...+...|++++|.+.++..... ++.+...|..+...+...|++++|...++++.+.+|+++..+..++.+|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 344555666666777777777777666522 3334445677777777777777777777777777777777777777777
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=4.9e-05 Score=66.87 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
..+...+...|+-+....+....... .| |.......+....+.|++..|...+++... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 44455566666666666666554433 22 233444456666677777777777777665 44666777777777777
Q ss_pred hcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 470 RAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
+.|++++|..-|.+.. ..+..|. ..+.+...+.-.|+.+.|+.++..+....+.++.+-..|+.+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 7777777777776655 1223333 267777777777777777777777777777777777777777777777777765
Q ss_pred HHH
Q 007077 549 VRQ 551 (619)
Q Consensus 549 ~~~ 551 (619)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.00022 Score=75.85 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCC
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNG 401 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 401 (619)
..+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|.+++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 355566666667777777777777776665 56677777777777777 7777777766543 3366666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDIT-FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
++..+.+++.++... .|+... |..+++. +...-+..--+.++..+...|-...+++++..+
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~~k----------------i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIERK----------------VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHHHH----------------HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 777778888877776 555432 2222221 211112222233445555666666677777777
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHH
Q 007077 481 IRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
++.+... ++.+..+..-++..|.
T Consensus 246 LK~iL~~-~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEH-DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhc-CCcchhhHHHHHHHHH
Confidence 7766632 3334333444554443
No 129
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00043 Score=65.87 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMY 366 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (619)
+..+-..+...++.++|+.++.++.+ +.|+.. .+..--.++...+ +++++...+..+.+.. +.+..+|+.-...+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455566777788888887776 345444 3333333444455 5677777777777654 44555666555555
Q ss_pred HhCCCH--HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc-
Q 007077 367 AKCGLI--EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG---GL- 437 (619)
Q Consensus 367 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~- 437 (619)
.+.|+. ++++.+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555652 567777776654 36677888888888888899999999998887422 334555554444333 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---
Q 007077 438 ---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA----GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG--- 507 (619)
Q Consensus 438 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 507 (619)
.++...+...++.. .+-+...|+.+...+... +...+|.+.+.+... ..+.+......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 196 EAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-KDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred cccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-ccCCcHHHHHHHHHHHHhhhccc
Confidence 24566666666642 234467788777777763 345668888877653 34555566777888776532
Q ss_pred ---------------CHHHHHHHHHHHhccCCCCcc
Q 007077 508 ---------------NVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 508 ---------------~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..++|.++++.+.+.+|-...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~ 308 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN 308 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence 235677777666555554444
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0005 Score=60.68 Aligned_cols=177 Identities=13% Similarity=0.089 Sum_probs=118.4
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 344 HGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
.+.+.......+......-...|+..|++++|++..+... +......=...+.+..+.+-|...+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3334333333343333334456888888999988888733 3333333445566777888899999988854 2445
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 424 TFIGVLSACSH----GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 424 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
|.+.+..++.+ .+.+.+|.-+|+++.+ ..+|+..+.+....+....|++++|..+++....+ +..++.+...+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 77767776643 4568888889998876 45788888888888888889999999998888743 44444455555
Q ss_pred HHHHHHcCCH-HHHHHHHHHHhccCCCCcc
Q 007077 500 LSACRIYGNV-DMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 500 ~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 528 (619)
+..-...|.. +--.+...++....|..+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 5555555554 4455667777777777765
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.1e-05 Score=78.14 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=105.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
...+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++... ..+.+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 3456667777788999999999998864 355 445588888888999999999998883 2444566677777889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999887
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0062 Score=63.13 Aligned_cols=492 Identities=13% Similarity=0.113 Sum_probs=256.6
Q ss_pred CCCChhHHHHhhccCC--CCCcccHHHHHHHHH--hcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHH
Q 007077 34 SHGNLLYAEKIFGSIQ--SPCLLAYNLLIKAFA--KKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEK 109 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 109 (619)
..+++..|....+++. .||. .|..++.++. |.|+.++|..+++.....+.. |..|...+-.+|...++.+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3456666666666553 2332 3455555544 678888888777776554332 56677777777778888888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHhHhcCChh----HHHHHHccCCCCCeecHHHHHHHHHcCC-Ch---------hHHHH
Q 007077 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKIC----NVKKLFDEMPDKDVVSWNVSISGHVKCM-RF---------EDAVD 175 (619)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~ 175 (619)
++++.... .|+......+..+|.|.+.+. .|.++++..++.--..| ++++...+.. .. .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHH
Confidence 88877763 355666666777777776654 46666665554333333 3333333221 11 23455
Q ss_pred HHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHH-HHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC
Q 007077 176 VFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHR-YINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK 253 (619)
Q Consensus 176 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (619)
.++.+.+..|---+..-...-+......+.+++|..++. ..... .+.+...-+.-++.+...+++.+-.++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666665523322222223333444566788888888873 33333 5556666677788888888888877766666542
Q ss_pred CchhHHHHHHHHHh----------------cCCHHHHHHHHccCCCC-ChhhHHHHHHHHH---HcCChhHHHHHHHHHH
Q 007077 254 NVICWTSMVSGYVN----------------CGQLEKARDLFDRSPVR-DIVLWTAMINGYV---QFNRFDEAVALFREMQ 313 (619)
Q Consensus 254 ~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 313 (619)
+..-|...++.+++ .+..+...+...+.... .--.|-+-+..+. .-|+.+++...|-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~-- 333 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK-- 333 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--
Confidence 22215444443321 11222222222221111 1122333333333 34777776655432
Q ss_pred HcCCCC----CHHH---------HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC-----HHH
Q 007077 314 IIRLKP----DKFI---------LVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL-----IEK 374 (619)
Q Consensus 314 ~~g~~p----~~~~---------~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~ 374 (619)
+-|-.| |... ...++..+.... +.....++.+. +...+..-.-.|. -+.
T Consensus 334 kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 334 KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHH
Confidence 222222 1111 122222222211 11111111111 0011111111111 011
Q ss_pred HHHHH----HhcCCC---------------C---hhhHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCC-CHHHHHHH
Q 007077 375 ALEIF----YELREK---------------D---AASWTSIICGLAMNGKIN---KALELFSQMISGGAKP-DDITFIGV 428 (619)
Q Consensus 375 A~~~~----~~~~~~---------------~---~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~~~~~l 428 (619)
-..++ .....+ + .-+-+.|+..+.+.++.. +|+-+++.-... .| |..+-..+
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlL 479 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLL 479 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHH
Confidence 11111 111110 0 123466778888888765 455566655544 34 34466677
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C--CCcccHHHHHHHHHHH
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN---E--NNEIIVPLYGALLSAC 503 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~ 503 (619)
+..|+-.|-...|.++|+.+--+ .+..|...|. +...+...|++..+...++.... . ...+. | +...
T Consensus 480 iriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---y---I~~A 551 (932)
T KOG2053|consen 480 IRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE---Y---IALA 551 (932)
T ss_pred HHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---H---HHHH
Confidence 88898889999999999988655 6666643332 34455667888888888876541 1 12222 2 2223
Q ss_pred HHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 504 RIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.+.|.+..-.++..--..+.-. -...-....+.+...++.++-.+.++.|.
T Consensus 552 Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 552 YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 4667776666553322222211 11222455667788889888888888886
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00011 Score=77.96 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=143.2
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI-LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+.+...|..|+..|...+++++|.++.+...+ ..|+... |..+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 34667899999999999999999999997666 4565543 22233355566665554443 2
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
++.......++.-...+...+.+ .+..++..++.+|-+.|+.++|...|+++++.. .-|..+.+.+...++.. +.+
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22333333333222222223322 134467778888888888888888888888874 22356778888888777 888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHH---HHHH--hcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLI---DLLG--RAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~---~~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+|.+++.+++..+ -+..-|+.+. .-++ ...+.+.-..+.+++... +....+.++--+-..|...++++++.
T Consensus 167 KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 167 KAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 8888887776541 0100111111 1111 112223333333333311 12222333555556778889999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHH
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.+++.+.+.+|.|..+...++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999999999998887
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.0072 Score=62.68 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=104.6
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVG--WLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICN 141 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 141 (619)
...+++..|++....+.+. .||. .|..++.++. +.|..++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4455666666666666554 2332 2444444443 566666666666655544433 55566666666666666666
Q ss_pred HHHHHccCCCC--CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCC-ChHHHHHHHHHHHH
Q 007077 142 VKKLFDEMPDK--DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALK-NLELGKEIHRYINQ 218 (619)
Q Consensus 142 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 218 (619)
|..+++..... +......+..+|+|.+.+.+-.+.--+|-+ .++-+...+-.+++...... ..+.+..
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~------- 166 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLD------- 166 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCccccc-------
Confidence 66666665542 222233334455555544432222222211 12223344444444322111 1111000
Q ss_pred hccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCC-c-h---hHHHHHHHHHhcCCHHHHHHHHc-----cCCCCChhh
Q 007077 219 ELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKN-V-I---CWTSMVSGYVNCGQLEKARDLFD-----RSPVRDIVL 288 (619)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~---~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~~~~ 288 (619)
.. -..-|.+.++.+.+.+ . . -.-.....+-..|++++|.+++. ....-+...
T Consensus 167 ------~i------------~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l 228 (932)
T KOG2053|consen 167 ------PI------------LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYL 228 (932)
T ss_pred ------ch------------hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHH
Confidence 00 0112333333333321 0 0 01112233345666777777663 222334444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIR 316 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 316 (619)
-+--+..+...+++.+..++-.++...|
T Consensus 229 ~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 229 ENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4555666777788888888777777765
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00022 Score=62.30 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSI---ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
++..++-+...+|+.+.|...++++..+-+.++... .--+-..|++++|+++|+..++.. +.|.+++-.-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344555566677777777777777664333332221 223456789999999999999884 3345677776767777
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---CHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG---NVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 511 (619)
.|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++..- .|.++..+..+...+...| +.+.
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 7888888888888887 55788999999999999999999999999998722 3333334666666654444 6788
Q ss_pred HHHHHHHHhccCCCCcchHH
Q 007077 512 GEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~ 531 (619)
+.+.|.++.++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999997665443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00011 Score=70.59 Aligned_cols=124 Identities=17% Similarity=0.038 Sum_probs=106.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN 508 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (619)
.-.+...|..++|+..++.+.. ..+.|+..+....+.+.+.++.++|.+.++++... ++.....+-.+..++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCC
Confidence 3345577899999999999887 44455667777889999999999999999998832 33335558889999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+|++.++....-+|+++..|..|+.+|...|+..+|.....++..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888764
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=2.2e-05 Score=65.12 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 408 ELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 408 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+.+++.+.. .|+. .....+...+...|++++|...++.+... .+.+...+..+..++.+.|++++|...+++...
T Consensus 4 ~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566655 5544 45666667788889999999999988763 244677888899999999999999999988763
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.++.+...+..+...+...|++++|...++++.+++|++...
T Consensus 80 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 -LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred -cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 244455568888888999999999999999999999988773
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=7.8e-05 Score=65.05 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=143.2
Q ss_pred hCCCHHHHHHHHHhcCCC--------Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCc
Q 007077 368 KCGLIEKALEIFYELREK--------DA-ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGL 437 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~--------~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~ 437 (619)
...+.++..+++.++... +. ..|..++-+....|+.+.|...++++... .|.+.-...+= .-+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhc
Confidence 456788888888877631 22 23455666777889999999999999887 46654322222 23456799
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAA 517 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (619)
+++|.++++.+... -+.|..++-.=+...-..|+.-+|++-+.+... ....+...|.-+...|...|+++.|.-+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999874 255577777777777788888899988877762 345566779999999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHHHhCCC
Q 007077 518 LLEKIESKDSSFHTLLANIYASAN---RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 518 ~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 558 (619)
++.=+.|-++..+..+++++.-.| +.+-|.+++.+..+...
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999877765 56678888988887654
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0058 Score=59.65 Aligned_cols=213 Identities=11% Similarity=0.064 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC---CHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYAKCG---LIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
+++..+++.....-...+..+|..+.+.-...- ..+.....++++.. .-.-+|..+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555544333334444444443221111 24444555555442 23457888888888899999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--
Q 007077 411 SQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-- 487 (619)
Q Consensus 411 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 487 (619)
.+..+.+..+ +.....+++.-+| .++.+-|.++|+.=.++++ .++.--...++-+..-++-..|..+|++....
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4557777777665 4788999999998777553 44555677888899999999999999998865
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS----SFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..-+..+|..++.--..-|+...+.++-++.....|.+. ..-..+++-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2333456799999999999999999999888876666221 11345666677677665555444444
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.4e-06 Score=51.42 Aligned_cols=35 Identities=40% Similarity=0.749 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=5.7e-05 Score=73.20 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHG 435 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 435 (619)
....+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.+.. .|. ...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344567777788899999999999999888888888999999999999999999999876 554 44555556678899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
++++.|..+.+++... .|+ ..+|..|+.+|.+.|++++|+..++.++.
T Consensus 248 ~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999853 455 67999999999999999999999998873
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=6.6e-05 Score=62.92 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=57.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc--HHHHHHHHHHHHHcCCHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII--VPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 511 (619)
.++...+...++.+...++-.| .....-.+...+...|++++|...|+.+......+. ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321110 012223344555556666666666665553321111 1123334455556666666
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
|+..++.. ...+-.+..+...+++|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222334455666667777777777666654
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=3.5e-06 Score=50.20 Aligned_cols=34 Identities=41% Similarity=0.728 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 007077 53 LLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSP 86 (619)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 86 (619)
+.+||.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578899999999999999999999998888877
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00027 Score=66.16 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=116.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH------------
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY------------ 461 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------------ 461 (619)
.++...|++++|.+.--..++. .+. ......-..++...++.+.+...|++.. ...|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4567788888888887777655 332 2222222234456778888888888766 445653321
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 462 -GCLIDLLGRAGLLDEAEELIRKIPN---ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 462 -~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..=..-..+.|++.+|.+.+.+... ....++...|.....+..+.|+.++|+.-.+++.+++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 1223445688999999999998872 223445556777777788999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...++|++|.+-+++....
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988653
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.4e-06 Score=49.81 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 320 (619)
.+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.0002 Score=60.03 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDD----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGC 463 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 463 (619)
|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44444444 477888888888888876 4443 23444556777888888888888888875 32222 124445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+..++...|++++|+..++.....+ .....+......+...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6778888899999999887754333 33445667778888899999999888765
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=8.1e-05 Score=72.57 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=51.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|+++.|...|++++.. -+.+...|..+..+|.+.|++++|+..++++.. -++.....|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE-LDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHhCCHH
Confidence 344455556666555555542 122344455555555555555555555555542 12233334555555555555555
Q ss_pred HHHHHHHHHhccCCCCcchHHHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+|+..++++.+++|+++.+...+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555543333
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=4.7e-05 Score=58.43 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+..++..+...|++++|...+++.... .+.+...+..+...+...|++++|.+.++.+....|.++..+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 455677777888888888888877632 2223345777788888889999999999999888888888888889999999
Q ss_pred CChHHHHHHHHHHHh
Q 007077 541 NRWEDVTNVRQKMKE 555 (619)
Q Consensus 541 g~~~~A~~~~~~m~~ 555 (619)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988887764
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0027 Score=56.26 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=128.0
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 007077 261 MVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA-LFREMQIIRLKPDKFILVALLTGCAQLGALEQ 339 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 339 (619)
+-++|...|.......-......+.......+......-++.++-+. +.+.+.......+......-...|+..++++.
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 34444444544433333322222233333333333333333333333 33444444344443444444556778888888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-AASWTSIICGLAM----NGKINKALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 414 (619)
|........ +....-.=+..+.+..+.+-|...+++|.+-| -.+.+.|..++.+ .++..+|.-+|++|-
T Consensus 127 Al~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 127 ALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 877765421 22222233445677788888888888888753 4556656666543 456888999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCC
Q 007077 415 SGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE-AEELIRKIP 485 (619)
Q Consensus 415 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 485 (619)
+. ..|+..+.+....++...|++++|..+++....+. ..++.+...++-+-...|...+ -.+.+.+..
T Consensus 201 ~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 201 EK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 74 47888888888888889999999999999888742 3445666666666656665544 344555555
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=8.3e-05 Score=60.01 Aligned_cols=96 Identities=15% Similarity=-0.037 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-CC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE-NN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD---SSFHTLLAN 535 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 535 (619)
+..++..+.+.|++++|.+.|+++... |+ +.....+..+...+...|+++.|...++.+....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444455555555666666555555421 11 1112234445555566666666666666665555553 234555566
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665543
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.1e-05 Score=47.96 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKP 319 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 319 (619)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=5.2e-05 Score=68.10 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
-..+.+++.+|...|...+. +.|. ...|..=..+|.+.|.++.|++-.+.... -++....+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChHHHHHHHHHHHHHHccCcH
Confidence 45677888888888888874 3444 55566667788888888888888887773 4677777888888888888888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++|++.|+++++++|++......|-
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHH
Confidence 8888888888888888886444443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=5.6e-06 Score=61.81 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=43.4
Q ss_pred CCHHHHHHHHhhCCCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 472 GLLDEAEELIRKIPNENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
|++++|+.+++++..... .++...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455555555555542111 11233344456666666666666666666 5555555555555666677777777776666
Q ss_pred HH
Q 007077 551 QK 552 (619)
Q Consensus 551 ~~ 552 (619)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00032 Score=56.51 Aligned_cols=108 Identities=9% Similarity=-0.011 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCC-cccHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENN-EIIVPLYGALL 500 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~~l~ 500 (619)
++......+...|++++|...|+.+...+.-.| ....+..+..++.+.|++++|.+.++++.. .|. +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765421111 123555677777777788888777777652 222 22234467777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.++...|++++|...++++.+..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888887766443
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=4.4e-05 Score=54.48 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN-RWEDVTNVRQKMKE 555 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 555 (619)
..+|..+...+...|++++|+..|+++.+.+|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999999999999999999999 79999999998765
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.87 E-value=4.9e-05 Score=53.41 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+...+...|++++|+..++++.+..|+++.++..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888888888653
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00056 Score=56.40 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
.....-+...|++++|..+|+-+.. -++.+..-|..|..+|...+++++|+..|..+..++++||......+.+|...|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344556678999999999987663 244445558899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 007077 542 RWEDVTNVRQKMKE 555 (619)
Q Consensus 542 ~~~~A~~~~~~m~~ 555 (619)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998776
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00018 Score=64.78 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=74.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRA 471 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 471 (619)
..-+.+.+++.+|+..|.+.++. .|. .+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34567889999999999999987 554 6677888899999999999999888877 44565 67899999999999
Q ss_pred CCHHHHHHHHhhCC
Q 007077 472 GLLDEAEELIRKIP 485 (619)
Q Consensus 472 g~~~~A~~~~~~~~ 485 (619)
|++++|++.|++..
T Consensus 163 gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL 176 (304)
T ss_pred CcHHHHHHHHHhhh
Confidence 99999999999887
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0029 Score=59.75 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
|......|...|++++|.+.|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4455666666777777777776653
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=5.1e-05 Score=53.97 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=44.1
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|++.++++....|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999999999999999888888899999999999999988887765
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.9e-05 Score=45.00 Aligned_cols=31 Identities=42% Similarity=0.877 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRERGV 84 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 84 (619)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00037 Score=68.02 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=76.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.....+...|++++|++.|++.++. .|+ ...|..+..++...|++++|...++.+... -+.+...|..+..+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 3456677899999999999999987 555 567888888999999999999999999864 23357788889999999
Q ss_pred cCCHHHHHHHHhhCC
Q 007077 471 AGLLDEAEELIRKIP 485 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~ 485 (619)
.|++++|+..|++..
T Consensus 83 lg~~~eA~~~~~~al 97 (356)
T PLN03088 83 LEEYQTAKAALEKGA 97 (356)
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999999999887
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00028 Score=60.95 Aligned_cols=97 Identities=8% Similarity=-0.214 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
...|..++..+...|++++|+..|++.... ++++ ...+|..+...+...|++++|+..++++..+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456677777888889999999999887522 2222 23468888999999999999999999999999998888888888
Q ss_pred HHH-------hCCChHHHHHHHHHHH
Q 007077 536 IYA-------SANRWEDVTNVRQKMK 554 (619)
Q Consensus 536 ~~~-------~~g~~~~A~~~~~~m~ 554 (619)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887776666543
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=0.00012 Score=54.51 Aligned_cols=47 Identities=11% Similarity=0.313 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 401 GKINKALELFSQMISGGAK-PDDITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555444110 1222333344444455555555555444
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0004 Score=60.20 Aligned_cols=85 Identities=14% Similarity=-0.064 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
...+..+...+...|++++|...|++.... ++.+ ....+..+...+...|++++|+..++++....|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777888888888888776532 2222 23457888888889999999999999999999998888888888
Q ss_pred HHHhCCC
Q 007077 536 IYASANR 542 (619)
Q Consensus 536 ~~~~~g~ 542 (619)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=9.6e-05 Score=51.90 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999988843 455777788899999999999999999999999999875
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00096 Score=62.71 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA-CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367788888888888999999999998553 2233445544444 334577778999999999854 566778999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 467 LLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+.+.|+.+.|..+|++.... +... ...+|...+.--.+.|+.+...++.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998843 2223 3458999999999999999999999999999888665
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0011 Score=57.33 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=81.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD--DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 463 (619)
....+..+...+...|++++|...|++.++....|. ...+..+...+.+.|++++|...+++.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566677777777888888888877776532322 245666667777777777777777777653 1223455556
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322211 122677888888888888887 4455555555544
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0018 Score=66.07 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=22.7
Q ss_pred CChhhHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH
Q 007077 385 KDAASWTSIICGLAM--NG---KINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~ 422 (619)
.|...|...+.+... .+ ....|..+|++.++. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 356666666665432 22 256788888888877 6764
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00047 Score=52.68 Aligned_cols=64 Identities=17% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
.+..+..++...|++++|.+.+++.... .+....++..+...+...|+++.|...++.+.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444443311 111112344444555555555555555555554444
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.2e-05 Score=43.87 Aligned_cols=31 Identities=32% Similarity=0.720 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRL 317 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 317 (619)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00053 Score=62.23 Aligned_cols=106 Identities=11% Similarity=-0.038 Sum_probs=87.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCcchHH
Q 007077 455 QPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG---NVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
+-|...|..|...|...|+...|..-|.+... -.+.+...+..+..++.... ...++..+++++..++|.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR-LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 55689999999999999999999999988772 23344445777777654432 467889999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
.|+..+...|++.+|...++.|.+......
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998655433
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.014 Score=55.14 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHc
Q 007077 261 MVSGYVNCGQLEKARDLFD 279 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~ 279 (619)
....|-..+++++|.+.|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~ 59 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYE 59 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHH
Confidence 3445555556655555543
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.011 Score=49.36 Aligned_cols=135 Identities=8% Similarity=-0.048 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcccHHHHH
Q 007077 419 KPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEIIVPLYG 497 (619)
Q Consensus 419 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 497 (619)
.|+...-..+..+....|+..+|...|++...- -+..|....-.+..+....+++..|...++++.. .|..-++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 566666666777777778888887777776652 3445566666777777777788877777776542 22222333356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+...+...|.+..|+..|+.+..--|+... ....+..+.++|+.++|..-+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677788888888888888888777776443 55566777888887777765555543
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.072 Score=50.76 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=88.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
+.+..+.-|...|+...|.++-... ++ |+...|...+.+|+..|+|++-.++... ...|+. |.-++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIG---yepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIG---YEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCC---hHHHHHHH
Confidence 5566667777888888887775443 44 8899999999999999999998887654 234455 99999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+.|+..+|..+..++ | +..-+..|.+.|+|.+|.+.--+.++
T Consensus 248 ~~~~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHCCCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9999999999998772 1 35678889999999999887665543
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.60 E-value=0.067 Score=50.38 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred ccHHHHHHHHHh--cCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCChhhH---
Q 007077 54 LAYNLLIKAFAK--KGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVG--WLGEVKKGEKVHGYVVKTGLEFDTYVC--- 126 (619)
Q Consensus 54 ~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~--- 126 (619)
..|.+|-.++.. .|+-..|.++-.+-.+. +..|......++.+-. -.|+.+.|.+-|+.|.. |+.+-
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 457777777664 46777777766654432 4456666777776554 56899999999999975 33322
Q ss_pred -HHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhh--HHHHHHHh
Q 007077 127 -NSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGT--VVSTLSAC 200 (619)
Q Consensus 127 -~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~ 200 (619)
..|.----+.|+.+.|+..-+.... | -...+.+.+...+..|+|+.|+++++.-+...-+.++..- -..++.+-
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2222233467888888887776553 2 3457888899999999999999999887664445555432 11222221
Q ss_pred --h-cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC
Q 007077 201 --T-ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN 252 (619)
Q Consensus 201 --~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (619)
. -..+...|...-....+.-|.-...-..-...+.+.|+..++-.+++.+-+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 237 AMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1 112334444443333333221122223334556666666666666655533
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.073 Score=50.14 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHHH--HHhcCChhhHHHHhccCCC-CCchh--HHHHHHHHHhcCCHHHHHHHH
Q 007077 204 KNLELGKEIHRYINQELEFTPIMGNALLDM--YCKCGCLSEARELFDEMPN-KNVIC--WTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~~~A~~~~ 278 (619)
|+-..|+++-....+.+..|..-.-.|+.+ -.-.|+++.|.+-|+.|.. |.... ...|.-.-.+.|..+.|...-
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 444555554444444433443333333332 2345777777777777765 32221 222222233567777776665
Q ss_pred ccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---ccCcHHHHHHHHHHHHH
Q 007077 279 DRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR-LKPDKF--ILVALLTGCA---QLGALEQGKWIHGYINE 349 (619)
Q Consensus 279 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~ 349 (619)
++.- +.-...+.+.+...|..|+|+.|+++++.-+... +.++.. .-..|+.+-+ -..+...|...-.+..+
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K 257 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK 257 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 5433 2234677888888999999999999988765543 445443 2223333221 12345555555554444
Q ss_pred cCCCCChh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCH-HHHH
Q 007077 350 NRITVDAV-VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMIS-GGAKPDD-ITFI 426 (619)
Q Consensus 350 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~~~~ 426 (619)
. .|+.. .-..-..++.+.|++.++-.+++.+-+..+..--..+..+.+.|+ .++.-+++... ..++||. .+..
T Consensus 258 L--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~ 333 (531)
T COG3898 258 L--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSL 333 (531)
T ss_pred c--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHH
Confidence 3 34332 222345678899999999999998875433332233333444444 44444444332 1236664 5777
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR-AGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
.+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+....|..|. |...
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa---W~ad 401 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA---WTAD 401 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc---cccc
Confidence 77788888899988887776665 457888888888887654 4999999999988887777777 6554
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00029 Score=50.86 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
..+.+.+++++|.++++++..++|+++..+...+.+|...|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577889999999999999999999999899999999999999999999988876443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.002 Score=55.66 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=51.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
..+...+...|++++|...|+.......-++ ...++..+..+|...|++++|++.+++.... .+.....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHH
Confidence 3333344444555555555444433211001 1124444555555555555555555544421 1222223444444444
Q ss_pred -------HcCCHH-------HHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 505 -------IYGNVD-------MGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 505 -------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
..|+++ +|...++++.+.+|++. ......+...|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 555555 55556666677777654 2333334444443
No 180
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.53 E-value=0.12 Score=51.71 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
+...|...++.-.+.|+.+.+.-+|++..-+ -...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4467888888889999999999999988755 3445666666556669999998888777665433333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHhhCCCCC--CcccHHHHHHHHH-HHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAE---ELIRKIPNEN--NEIIVPLYGALLS-ACR 504 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~--~~~~~~~~~~l~~-~~~ 504 (619)
+-..|+.+.|..+++.+... . |+ +..-..-+....+.|..+.+. +++....... .......+.-... .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999875 3 66 333444456677889988888 5655544211 1111111222222 245
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999988777663
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0014 Score=51.86 Aligned_cols=92 Identities=16% Similarity=-0.015 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHH
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK---DSSFHTLLANIY 537 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 537 (619)
.+..++-..|+.++|+.+|++....+... ....+-.+.+.+...|++++|..++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556667777778887777766433222 2334556777778888888888888888777776 555555666777
Q ss_pred HhCCChHHHHHHHHHHH
Q 007077 538 ASANRWEDVTNVRQKMK 554 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~ 554 (619)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78888888887765543
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.14 Score=51.89 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=143.4
Q ss_pred hhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHC-CCCCCcccHHH-----H--HHHHhccCChhHHHH
Q 007077 38 LLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRER-GVSPDNFTYPF-----V--FKAVGWLGEVKKGEK 109 (619)
Q Consensus 38 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~-----l--l~~~~~~~~~~~a~~ 109 (619)
+++|.+..+.- |.+..|..+...-...-.++-|...|-+.... |++.-.. ... + ....+--|++++|++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 45555555444 44566777766666665666666666554331 2211000 000 0 111223467888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-----CeecHHHHHHHHHcCCChhHHHHHHHHhHhcC
Q 007077 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-----DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGC 184 (619)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 184 (619)
++-.+-++. .-|..+.+.||+-...++++.-... -..+|+.+...++....|++|.+.|..-..
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 776665532 2356677778888777777654321 124788888888888888888888876432
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHH
Q 007077 185 NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSG 264 (619)
Q Consensus 185 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 264 (619)
. ...+.++.+...++. ++.+...+|.+....-.+.+++.+.|.-++|.+.|-+-..|. .-+..
T Consensus 825 --~------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~t 887 (1189)
T KOG2041|consen 825 --T------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHT 887 (1189)
T ss_pred --h------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHH
Confidence 1 112233333333322 223334477788888888899999999999988776554432 34556
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 007077 265 YVNCGQLEKARDLFDRSPVRDIVLWTA--------------MINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
+...++|.+|.++-++..-|.+.+.-+ -|..+.+.|++-+|.+++.+|.+
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 677788888888887766554433211 13345556666666666666643
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.0053 Score=62.74 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHh
Q 007077 417 GAKPDDITFIGVLSACSH-----GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRA--------GLLDEAEELIR 482 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 482 (619)
+.+.+...|...+++... .+....|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345667788888877532 23477999999999854 677 34444444433321 23455666666
Q ss_pred hCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 483 KIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 483 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.... .++.+..+|.++.-.....|++++|...++++.+++|. ...|..++.++...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 54432 24445566888877777889999999999999999995 67799999999999999999999999876544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00012 Score=51.97 Aligned_cols=50 Identities=24% Similarity=0.241 Sum_probs=25.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..|++++|.++|+.+...+ +-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555431 2234444455555555555555555555554
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.031 Score=46.81 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD---DITFI 426 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~ 426 (619)
|++..--.|..+....|+..+|...|++... .|......+.++....+++..|...++++.+.. |+ ..+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 3444344455555555555555555554432 244455555555555555555555555555431 21 11333
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (619)
.+.+.+...|...+|..-|+..... -|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 3445555556666666666555533 345444444445555555555443
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0014 Score=61.53 Aligned_cols=260 Identities=11% Similarity=0.030 Sum_probs=148.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHH--H--cCC-CCChhHHHHHHHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLK---PDKFILVALLTGCAQLGALEQGKWIHGYIN--E--NRI-TVDAVVATALIEMY 366 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~~~~ 366 (619)
-+|+.|+....+.+|+...+.|-. .=..+|+.|.++|.-.+++++|.+++..=+ . .|- .........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 367777777777777777776622 112346666677777777777777665311 0 110 01122223344445
Q ss_pred HhCCCHHHHHHHHHhcCC-------C--ChhhHHHHHHHHHhCCC--------------------hHHHHHHHHHHH---
Q 007077 367 AKCGLIEKALEIFYELRE-------K--DAASWTSIICGLAMNGK--------------------INKALELFSQMI--- 414 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~--- 414 (619)
--.|.+++|+..-.+-.. + ....+..+...|...|+ ++.|.+.|.+-+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666554332221 1 23344455555554432 233444444322
Q ss_pred -HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 007077 415 -SGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTM---TEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIP--- 485 (619)
Q Consensus 415 -~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 485 (619)
..|-.. .-..|..+...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 112111 1135556666666678898888766542 22233222 24567778888888999999998887543
Q ss_pred --CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 486 --NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK----IE--SKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 486 --~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...........-+|...|.-...++.|+.++.+-.. +. -....++..|+++|...|.-++|+.+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 111222333455677777777788888887765432 22 2345567889999999999999988877664
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.41 E-value=0.01 Score=48.94 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
....-.+..-+...|++++|..+|+-+... .|.. .-|..+..+|-..|++++|+..|...... . +.|+..+..+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHH
Confidence 333334444444555555555555554443 3332 23333334444445555555555554432 1 12244444455
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 007077 466 DLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~ 484 (619)
.++...|+.+.|.+.|+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555544433
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0026 Score=62.27 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
..++++.|...|..++++.+++.=...|+-||..+++.+++.+.+.|++..|.++...|..
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555443
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.38 E-value=0.036 Score=55.49 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=145.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHH---------HHHhHHCCCCCCcccHHHHHHHHhccCChhHH--HHHHHHHHHhCCC
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLL---------FSKLRERGVSPDNFTYPFVFKAVGWLGEVKKG--EKVHGYVVKTGLE 120 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~g~~ 120 (619)
-.+.+.+-+-.|...|.+++|.++ ++.+... ..++-.++..=.+|.+.++..-- ..-++.+.++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455556667777777777654 1221111 12334455555666666655433 2334566677777
Q ss_pred CChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHh
Q 007077 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSAC 200 (619)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 200 (619)
|+... +...++-.|++.+|.++|.+ +|.-..|+++|.+|+- . ....-+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-F----------D~aQE~ 680 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-F----------DYAQEF 680 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-H----------HHHHHH
Confidence 77654 34456677889998888764 5667777777777643 1 112223
Q ss_pred hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 007077 201 TALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
...|..++-+.+.+.-..- ..+..--.+...++...|+.++|..+. ...|-.+-+.++-++
T Consensus 681 ~~~g~~~eKKmL~RKRA~W-Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADW-ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred hhcCChHHHHHHHHHHHHH-hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 3444444433333322111 011111133445566677777766533 234444555555555
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHH
Q 007077 281 SPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360 (619)
Q Consensus 281 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (619)
+...+..+...+...+.+...+.-|.++|..|-+ ...+++.....+++.+|..+-+...+. .++ +|.
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~ 808 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYM 808 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccc
Confidence 5555555555555555566666667777766632 123445555566666665554443221 122 222
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
....-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 809 pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 23333444444444443 334556666666666665543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00033 Score=49.89 Aligned_cols=66 Identities=18% Similarity=0.045 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-NVDMGEKLAALLEKIES 524 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 524 (619)
...|..+...+...|++++|+..|++.... ++.+...|..+..++...| ++++|++.++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888877632 4445666888888888888 68888888888888877
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.014 Score=51.57 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-----ChhHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITV-----DAVVATA 361 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 361 (619)
...+.++..+...|.+.-.+..+++.++...+.+....+.+.+.-.+.||.+.|...++.+.+..-.. ...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44567777778888999999999999887767777888888888899999999999999877643233 3333334
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFI 426 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 426 (619)
....|.-.+++..|...|.++... |+..-|.-.-+..-.|+...|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444566778888888888877643 5666666666667788889999999998877 55554433
No 192
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.27 Score=50.59 Aligned_cols=336 Identities=11% Similarity=0.081 Sum_probs=185.6
Q ss_pred CCCCCChhhHHH-----HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---hhhHHHHhccCCC--C
Q 007077 184 CNLMPDEGTVVS-----TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC---LSEARELFDEMPN--K 253 (619)
Q Consensus 184 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~ 253 (619)
.|++.+..-|.. ++..+...+.+..|.++-..+.........++.....-+.+..+ -+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 455555444433 44555666777777777666655422225666666666666532 2223333334433 4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCC--------ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVR--------DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 325 (619)
..++|..+...-..+|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+.+.- +...|.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH
Confidence 5556777777777888888888777643321 12233444455556666666666666554321 111111
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh-c------CCCChhhHHHHHHHHH
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE-L------REKDAASWTSIICGLA 398 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~l~~~~~ 398 (619)
.. ..+...|..+|.+..+..-. ..+-+.|-...+ ..+...|.. - .+.-........+.+.
T Consensus 583 ~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn-~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 583 MT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDN-HQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccc-hhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 11 11222333444443331100 011122222222 222221111 0 0111222233334444
Q ss_pred hCCCh----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 399 MNGKI----------NKALELFSQMIS-GGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 399 ~~g~~----------~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.... .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 43331 112222222221 2323333455666677778899999988876653 4888899989999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
++..+++++-+++-+.... |.. |.-+..+|.+.|+.++|.+++-+.-. +...+.+|.+.|++.+|.
T Consensus 725 La~~~kweeLekfAkskks---PIG---y~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKKS---PIG---YLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHhhhhHHHHHHHHhccCC---CCC---chhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHH
Confidence 9999999998888777652 444 88889999999999999999765532 226788999999999998
Q ss_pred HHHHHHH
Q 007077 548 NVRQKMK 554 (619)
Q Consensus 548 ~~~~~m~ 554 (619)
+.--+-+
T Consensus 791 d~A~~~r 797 (829)
T KOG2280|consen 791 DLAAEHR 797 (829)
T ss_pred HHHHHhc
Confidence 7765544
No 193
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.18 Score=48.49 Aligned_cols=141 Identities=10% Similarity=0.083 Sum_probs=105.3
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 007077 385 KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC 463 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 463 (619)
+-..+|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...+ +.+..--+-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHH
Confidence 446678888888888888999999999999988 5677778888887665 477888889998766543 233333455
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+..+.+-++-+.|..+|+....+ .......+|..++.--..-|+...+..+-+++.++.|....
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 667778889999999999865521 01122445889998888899999999888888888887643
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.18 Score=48.49 Aligned_cols=83 Identities=12% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCL---LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
-|.|...|-.|++.|. ..|..++.+++++++..|-+ .+|..-|++=....+++....+|.+.+.... +...|.
T Consensus 38 NPtnI~S~fqLiq~~~--tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 38 NPTNILSYFQLIQYLE--TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred CchhHHHHHHHHHHHh--hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 3567788889999888 88899999999998876644 4677778777777888888889888877533 455566
Q ss_pred HHHHHHhccC
Q 007077 93 FVFKAVGWLG 102 (619)
Q Consensus 93 ~ll~~~~~~~ 102 (619)
..+.-..+.+
T Consensus 114 lYl~YIRr~n 123 (660)
T COG5107 114 LYLEYIRRVN 123 (660)
T ss_pred HHHHHHHhhC
Confidence 6665544443
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00017 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.28 E-value=0.0048 Score=46.96 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGA-KPDDITFIGVLSACSHG--------GLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++. +.+-....+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666777999999999999999999 89999999999887653 2355678899999877 89999999
Q ss_pred HHHHHHHHHh
Q 007077 461 YGCLIDLLGR 470 (619)
Q Consensus 461 ~~~l~~~~~~ 470 (619)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0028 Score=61.97 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC-C-----CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 15 GLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS-P-----CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
+.+-++.....++..+. ...+++.+..++.+... | -..+..++|+.|...|..+.++.++..=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~--~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVE--SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcC--CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 34445555555555555 45555666665554431 1 1223456666666666666666666666666666677
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc
Q 007077 89 FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL 136 (619)
Q Consensus 89 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 136 (619)
++++.++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777776666677766666666666555555555554444444444
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.27 E-value=0.09 Score=52.78 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
..++...|+.++|..+. ..+|-.+-+.++-+++-. .+..+...+..-+-+...+.-|-
T Consensus 710 AEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHH
Confidence 44455566666665442 334445555555444432 23345555555555666677777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
++|.+|-. ...+++.....|++.+|..+-++.++
T Consensus 768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 77777643 23467777788888888888877763
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.25 E-value=0.0054 Score=46.72 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------cHHHHHHHHHHHHHcCCCCChhH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRL-KPDKFILVALLTGCAQLG--------ALEQGKWIHGYINENRITVDAVV 358 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 358 (619)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999887653 23456778899999999999999
Q ss_pred HHHHHHHHHh
Q 007077 359 ATALIEMYAK 368 (619)
Q Consensus 359 ~~~l~~~~~~ 368 (619)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.015 Score=46.20 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---ChhHHHHHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITV---DAVVATALIEM 365 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 365 (619)
.+..++-..|+.++|+.+|++....|+..+. ..+..+...+...|++++|..+++...... +. +..+...+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 3455677788888888888888887766543 245566667777788888877777766542 11 22222333345
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREKDAASWTSII 394 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 394 (619)
+...|+.++|++.+-....++...|.--|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666766666666544433333333333
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.034 Score=49.28 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCChhHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY----QIQPKLEHYGC 463 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~ 463 (619)
..-++++..+.-.|.+.-.+..+.+.++...+.+......+.+.-.+.|+.+.|...|+...+.. ++.-..-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777888898999999999987545556677778888889999999999999776542 22222333334
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
....|.-++++.+|...+.+++.. ++.++...|.-.-+..-.|+...|.+..+.+.+..|.....-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 445567788999999999888843 444444566655556667899999999999999999865543
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0084 Score=56.40 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-CCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK-CGLIEKALEIFYELRE---KDAASWTSIICGLA 398 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 398 (619)
+|..+++.+-+.+..+.|+.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+...+ .+...|...+.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34444455555555555555555554322 2233333333333222 3344445666555442 24555555555555
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 399 MNGKINKALELFSQMISGGAKPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
..++.+.|..+|++.+.. .|... .|...+.--.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665544 22222 555555555555666666666655554
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.15 E-value=0.01 Score=54.71 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCCcccHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN--ENNEIIVPLYG 497 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~ 497 (619)
.|........+.|++++|...|+.+.+.+ |+ ...+..+...|...|++++|...|+.+.. ...+.....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444455677777777777777653 33 24556677777777777777777777652 12222333455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++..+...|+.+.|...++.+.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5566666778888888888887777777664
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.13 E-value=0.0025 Score=61.78 Aligned_cols=68 Identities=7% Similarity=-0.188 Sum_probs=54.8
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+...|+.+..+|...|++++|+..|+++++++|++.. +|..++.+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666888888888888888888888888888888874 3888888888888888888888888764
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.0058 Score=56.39 Aligned_cols=98 Identities=14% Similarity=-0.006 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLL 533 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 533 (619)
..|..-+..+.+.|++++|+..|+.... .|+.+ ....+-.+...+...|++++|...|+.+.+..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555666778999999999998873 23322 234577788889999999999999999998888854 445667
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 007077 534 ANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+.++...|++++|.+.+++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.033 Score=50.99 Aligned_cols=174 Identities=12% Similarity=0.075 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKDA---AS---WTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLS 430 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 430 (619)
.-.....+...|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...+++.++. .|+. ..+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHH
Confidence 33445556677888888888888764321 11 234566778888888888888888876 3432 23333333
Q ss_pred HHhc--cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 431 ACSH--GG---------------L---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 431 ~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
+.+. .+ + ...|...|+.+++.+ |+ +....+|...+..+... ..
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~-la 175 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDR-LA 175 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHH-HH
Confidence 3221 10 1 233445555555432 33 22334444433333211 00
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
-. -..+..-|.+.|.+.-|..-++.+.+--|+.+. +...++.+|...|..++|..+.....
T Consensus 176 ~~---e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KY---ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH---HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 124455688899999999999999888887554 45678889999999999988877654
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.31 Score=49.68 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=99.6
Q ss_pred CChhhHHHHHHHhHhcCChhHHHHHHccCCC-CCeec------------HHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-KDVVS------------WNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
|.+..|..|...-...-.++.|...|-+... +.+.. -.+=|.+ --|++++|.++|-+|.+ ..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~dr-rD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADR-RD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccch-hh--
Confidence 6667777777666666667777777665543 11111 1111222 24778888888777744 21
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHH
Q 007077 188 PDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGY 265 (619)
Q Consensus 188 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 265 (619)
..+....+.|++-...++++.--.. ...-...++.+.+.+.....+++|.+.|..-.. -...+.++
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecl 832 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECL 832 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHH
Confidence 1223333444444443333221110 111123445555555555556666655544321 12234444
Q ss_pred HhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 007077 266 VNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHG 345 (619)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 345 (619)
....++++-+.+-+.++. |......+..++.+.|.-++|.+.|-+- + .| ...+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 4455566777777777777777766432 1 12 123455666666666655543
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0011 Score=41.85 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
+|..+...+...|++++|++.++++.+..|+++.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 58889999999999999999999999999999998887764
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.12 Score=49.86 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREK-------DAASWTSIICGLAM---NGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
.++-.|-...+++.-.++.+.+... ....-...+-++.+ .|+.++|+.++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566666666666666666543 11112223344445 6777777777777555555666667666665
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH----HHHHH---h----hCCCCCCc
Q 007077 431 ACSH---------GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE----AEELI---R----KIPNENNE 490 (619)
Q Consensus 431 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~----~~~~~~~~ 490 (619)
.|-. ....++|...|.+.- .+.|+..+--.++-.+...|...+ ..++- . +-......
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223566666666543 444554333333334444443221 11111 1 11112233
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.+-+.+.+++.++.-.|+++.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455556788888888899999999999888887554
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.032 Score=51.00 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHh
Q 007077 407 LELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GLLDEAEELIR 482 (619)
Q Consensus 407 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~ 482 (619)
..-++.-+.. .| |...|..+..+|...|+.+.|..-|....+.. .++...+..+..++..+ ....++.++|+
T Consensus 142 ~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 142 IARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3333443444 44 45688888888888888888888888877532 34466666666665533 25667888888
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 483 KIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++. ..++.++.....|...+...|++.+|...++.+.+..|.+.. +..++
T Consensus 218 ~al-~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 218 QAL-ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 888 346667667777888888999999999999999988887766 44333
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0025 Score=45.84 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=51.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
..|.+.+++++|.+.++++... +|.+...|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888899999988888733 3445555888888889999999999999999999998876443
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.94 E-value=0.0045 Score=58.22 Aligned_cols=128 Identities=15% Similarity=0.036 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CC--Chh
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYIN----ENRIT-VDAVVATALIEMYAKCGLIEKALEIFYELR-------EK--DAA 388 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 388 (619)
.|..|.+.|.-.|+++.|+..++.-+ +.|-. .....+..|.+++.-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788888887776543 22211 123456678888888899998888887643 22 345
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS----GGAK-PDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
++.+|.+.|.-..++++|+..+.+-+. .+-. -...++.++..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888888888888876432 1111 1234778888888888888888877665543
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.62 Score=48.12 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-.++-+.+. .+.-|..+..+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455556677888888888888887888888777888888888877666554432 2456667777888888
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRK 483 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (619)
+.++|.+++-+.. +. .-.+.+|.+.|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~------~l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG------GL----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccC------Ch----HHHHHHHHHhccHHHHHHHHHH
Confidence 8888888765442 11 1466777888888887776544
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0074 Score=57.17 Aligned_cols=84 Identities=6% Similarity=-0.037 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEE
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIH 574 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 574 (619)
+++.+..+|.+.+.+..|++...++++++|+|.-+...-+.+|...|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------- 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 3777778888899999999999999999999999899999999999999999999998876
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 575 EFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
..|.+.++...|..+...+++..
T Consensus 320 -------~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 320 -------LEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred -------hCCCcHHHHHHHHHHHHHHHHHH
Confidence 36666777777777766665543
No 215
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.87 E-value=0.36 Score=44.30 Aligned_cols=60 Identities=8% Similarity=-0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKFI--LVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.....+...|++++|++.|+++...-..+.... .-.+..++.+.++++.|...++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455566777777777777665322221111 123344555666666666666655554
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.83 E-value=0.015 Score=50.32 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred HHHHhc--CCCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 007077 377 EIFYEL--REKDAASWTSIICGLAM-----NGKINKALELFSQMISGGAKPDDITFIGVLSACSHG-------------- 435 (619)
Q Consensus 377 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 435 (619)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445544 35567777777777764 467777888888999999999999999999987542
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 436 --GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 436 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
.+-+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2234566677776554 777777777777776665553
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.17 Score=48.16 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=42.8
Q ss_pred HHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 007077 397 LAMNGKINKALELFSQMISG---GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAG 472 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 472 (619)
..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+..+|+.-.+.... +.|. +..|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543 1223333444444555566666666665555442 2222 222222233444455
Q ss_pred CHHHHHHHHhhCC
Q 007077 473 LLDEAEELIRKIP 485 (619)
Q Consensus 473 ~~~~A~~~~~~~~ 485 (619)
+|++|.+-+++..
T Consensus 336 ~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 336 KWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.0046 Score=51.89 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCcccC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK-----EMGVRKVP 562 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 562 (619)
...++..+...|++++|...++.+...+|-+..+|..++.+|...|+..+|.++++++. +.|+.|++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 56677778899999999999999999999999999999999999999999999999885 34666543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.0023 Score=46.77 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKI----ESK---DSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+++.+...|...|++++|+..++++.++ .++ -..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345777788888888888888888877543 222 244578888899999999999998887653
No 220
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.79 E-value=0.013 Score=50.75 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=71.2
Q ss_pred HHHccC--CCCChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------
Q 007077 276 DLFDRS--PVRDIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL-------------- 334 (619)
Q Consensus 276 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 334 (619)
+.|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 35566777777777764 366666777788888888888989999888877542
Q ss_pred --CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 335 --GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 335 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
.+-+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788889999999999999988888888866554
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.59 Score=44.67 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007077 257 CWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA 336 (619)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 336 (619)
+.+..|.-+...|+...|.++-.....||...|-..+.+++..++|++-.++-.. . -+++-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 4555566677788888888888888888888888888888888888876665432 1 123667778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88777776551 1245677788888888876653
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.69 E-value=0.68 Score=44.94 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 495 LYGALLSA--CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 495 ~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.-|.|.++ +..+|++.++.-.-.=+.++.| ++.+|..++-++....++++|..++.+++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 45566555 5678999999888888889999 78889999999999999999999998775
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.67 E-value=0.08 Score=47.18 Aligned_cols=49 Identities=8% Similarity=-0.075 Sum_probs=38.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhCCChHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSF---HTLLANIYASANRWEDVT 547 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 547 (619)
+..-|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4566888999999999999999999987654 467788899999888554
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.65 E-value=0.72 Score=44.78 Aligned_cols=119 Identities=21% Similarity=0.144 Sum_probs=77.6
Q ss_pred HHhCCC-HHHHHHHHHhcCC---CChhhHHHHH----HHHHh---CCChHHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 007077 366 YAKCGL-IEKALEIFYELRE---KDAASWTSII----CGLAM---NGKINKALELFSQMISGGAKPDDI----TFIGVLS 430 (619)
Q Consensus 366 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~ 430 (619)
+-+.|. -++|+++++.+.+ -|...-|... ..|.+ ......-+.+-+-..+.|+.|-.+ .-+.+.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 344454 7788888887653 2444333322 22322 233444555555566778877543 3344443
Q ss_pred H--HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007077 431 A--CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE 487 (619)
Q Consensus 431 ~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 487 (619)
| +...|++.++.-.-.-+. .+.|++.+|..+.-++....++++|..++..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 3 456899998876654444 67899999999999999999999999999998843
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.58 E-value=0.52 Score=42.33 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=85.2
Q ss_pred HHHhCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---
Q 007077 365 MYAKCGLIEKALEIFYELREK------DAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSH--- 434 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--- 434 (619)
.-.+.|++++|.+.|+.+... ...+--.++.++-+.++++.|+..+++....- -.|| ..|...|.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcc
Confidence 345668888888888877643 22344455667778888888888888877652 2233 333333333321
Q ss_pred ----cCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 435 ----GGL---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 435 ----~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
..+ ...|..-|+.++.++ |+.. -..+|...+..+... .. ..=..+..-|.+.|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~d~---LA-~~Em~IaryY~kr~ 181 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLNDA---LA-GHEMAIARYYLKRG 181 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHHHH---HH-HHHHHHHHHHHHhc
Confidence 112 234444455555442 3321 111111111111100 00 00112344466666
Q ss_pred CHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSF---HTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.+..|..-++.+.+--|+.+.. +..|..+|...|..++|...-+-+.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6666666666666555554433 3445556666666666665555443
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.036 Score=52.67 Aligned_cols=140 Identities=16% Similarity=0.013 Sum_probs=102.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 393 IICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
-.+.|.+.|++..|...|++.+.. -+ +...-+.++..... . .-..++..+.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 346778888888888888886653 11 01111112222221 1 12336777899999999
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHH-HHHHH
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDV-TNVRQ 551 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~ 551 (619)
++.+|++.-++... -++.++...---..+|...|+++.|+..|+++.+++|.|..+...++.+-.+..++++. .++|.
T Consensus 272 ~~~~Ai~~c~kvLe-~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLE-LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998883 46666555666678899999999999999999999999999888888887777766654 77888
Q ss_pred HHHh
Q 007077 552 KMKE 555 (619)
Q Consensus 552 ~m~~ 555 (619)
.|-.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 8864
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.46 E-value=0.0048 Score=45.08 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIP-----NENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
+|+.+..+|...|++++|++.|++.. ..+..+ ...++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555566666666666666555443 111222 245566677777777777777777776654
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.64 Score=41.39 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKP--DKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.....+...|++.+|+..|+.+...-... -....-.+..++.+.|+++.|...++.+++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666777777777777776542111 1123344555566666666666666665554
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.27 E-value=0.079 Score=51.80 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.+|.++.++.. +-++.+......+..+....|+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVS-DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433 1233333334444444444445555555555555555555555555555555555555555555553
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.20 E-value=0.077 Score=42.59 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
...|+..++.+++.+|+..|++..|.++.+.+.+.++++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888777777787777643
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.13 E-value=0.29 Score=40.77 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCcccHHHHHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP--NENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 505 (619)
...-+...|++++|..+|.-+... + .-+..-|..|..++...|++++|+..|.... ...++.. +-....++..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p---~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP---VFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---cchHHHHHHH
Confidence 334456789999999999988753 1 2345567888889999999999999997543 2222222 4566778889
Q ss_pred cCCHHHHHHHHHHHhccCCCC
Q 007077 506 YGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.|+.+.|+..|+.+.+ .|.+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999887 3443
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.04 E-value=0.64 Score=46.69 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHH
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAV 306 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 306 (619)
.+.++..+-+.|..+.|+++-..- ..-.....++|+++.|.++.+... +...|..|.....+.|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666666654321 233444556677777766666554 5567888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 307 ALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+.|++..+ +..|+-.|...|+.+.-.++.......|- ++....++.-.|++++..+++.+
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88876543 44555566667777776666666665541 34444455555666666655543
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.096 Score=48.30 Aligned_cols=159 Identities=14% Similarity=0.039 Sum_probs=117.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCC
Q 007077 398 AMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL----IDLLGRAGL 473 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~ 473 (619)
--.|+..+|-..++++++. .+.|..++...=++|...|+...-...++++.. ...||...|..+ ..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578889999999999887 244566777777899999999999999888875 346776555443 445568999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
+++|++.-++...- ++.+...-.++...+...|+..++.++..+-...-.. -.+.|-..+-.+.+.+.++.|+++
T Consensus 191 y~dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999988843 4555545566677778889999999998776544332 234466677778888999999999
Q ss_pred HHHHHhCCCcc
Q 007077 550 RQKMKEMGVRK 560 (619)
Q Consensus 550 ~~~m~~~~~~~ 560 (619)
++.-.-....+
T Consensus 270 yD~ei~k~l~k 280 (491)
T KOG2610|consen 270 YDREIWKRLEK 280 (491)
T ss_pred HHHHHHHHhhc
Confidence 98765433333
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.92 E-value=1.3 Score=40.27 Aligned_cols=196 Identities=22% Similarity=0.165 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445555556666666666665555432 2344455555556666666667776666665432221 11111222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 431 -ACSHGGLVDEGRRFFNTMTEVYQIQP----KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 431 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
.+...|+++.+...++.... ..| ....+......+...++.++|...+.+............+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56666777777777766633 122 2233333334455667777777777666532211133446666667777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++++.+...+..+....|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777555556666666666667777777776654
No 235
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.90 E-value=2.3 Score=43.09 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG-TVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
+...|+++|.---.....+.+...+..+.. --|-.. .|......-.+.|..+.+.++|+..+..+|.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~---kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS---KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 556788888765555566667777777753 234443 3444444456778889999999999888888888887766
Q ss_pred HHHH-hcCChhhHHHHhccCCC------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH
Q 007077 232 DMYC-KCGCLSEARELFDEMPN------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW 289 (619)
Q Consensus 232 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (619)
..+. ..|+.+...+.|+...+ .....|...|.--..++++.....++++...-....+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~ 185 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL 185 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh
Confidence 6554 35666676777766554 2444566666666666666666666666554333333
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.80 E-value=0.29 Score=39.80 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=39.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 466 DLLGRAGLLDEAEELIRKIPNE--NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
....+.|++++|.+.|+.+..+ ..+.....-..++.++.+.|++++|...+++.+++.|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3344567777777777666521 12223334556677777777777777777777777777654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.35 Score=44.75 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=120.2
Q ss_pred HHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHH--HHHHhccCcH
Q 007077 366 YAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGV--LSACSHGGLV 438 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l--l~~~~~~g~~ 438 (619)
....|+..+|...++++.+. |..+++--=.+|.-.|+.+.-...+++.... ..||.. +|..- .-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888753 7778888889999999999999999988754 245543 33222 2344678999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC---cccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN---EIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
++|.+.-++..+.+ +.|.-.-.+....+.-.|++.++.++..+-...=. .....-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999888776431 23344455677888889999999999887652211 11111122223345566899999999
Q ss_pred HHHH--hccCCCCcchH---HHHHHHHHhCCChHHHHHHHHHH
Q 007077 516 AALL--EKIESKDSSFH---TLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 516 ~~~~--~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
|+.- .++..+|..+. ..+--+..+...|.+-..+-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 9754 46777887533 22334444555555544444443
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.74 E-value=0.099 Score=48.76 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISG-GAKPDD---ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LE 459 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 459 (619)
.+|..+..++.+.-++.+++.+-+.-... |..|.. ....++..+....+.++++.+.|+...+.-.-..| ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555666666666666666655544332 222311 23344556666677788888888776543111122 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CCCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCc-
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN------ENNEIIV---PLYGALLSACRIYGNVDMGEKLAALLEKIE--SKDS- 527 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~- 527 (619)
++-.|...|.+-.++++|.-+..+... -++...- -+...+.-++...|....|.+..+++.++. ..|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888877665544321 0111110 011223456777888888888877775432 2232
Q ss_pred ---chHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 528 ---SFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 528 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.....++++|...|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33457888888888887777666654
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.73 E-value=0.26 Score=41.15 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTE----VYQIQPKLEHY 461 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 461 (619)
....++..+...|++++|..+.+++... .| |...+..++.++...|+...|.+.|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666777888888888888888876 44 456788888888888888888888877643 34777776543
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.59 Score=42.86 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=80.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.....|+..+|...|+..... .+-+...-..++.+|...|+.+.|..++..++..-..........-+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 445678888888888887763 233355666788888899999999999988874433333111112233333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+... ++.-...+|+|...-..++..|...|+.++|.+.+-.+..
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3222 2333467898988889999999999999999887777654
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=0.92 Score=46.26 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=75.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCC-CCc--ccHHHHHHHHHHHHHcCCHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCL-IDLLGRAGLLDEAEELIRKIPNE-NNE--IIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~ 510 (619)
....+.|.++++.+..++ |+...|... ...+...|++++|++.|++.... ... .....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 456777888888877653 665444433 34556778888888888865521 111 11122334456677788888
Q ss_pred HHHHHHHHHhccCCCCcchH-HHHHHHHHhCCCh-------HHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIESKDSSFH-TLLANIYASANRW-------EDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~m~~ 555 (619)
+|...+..+.+...-...+| ...+-++...|+. ++|.+++++.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888877666555544 3445567777877 888888887764
No 242
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.095 Score=44.55 Aligned_cols=140 Identities=15% Similarity=0.088 Sum_probs=91.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC----CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIPNE----NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
.-+.+.|++++|..-|...... +...-...|..-..+..+.+.++.|+.-..+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456678888887777665521 111112234445567788999999999999999999999888888899999999
Q ss_pred ChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHH-HHHHHHHHHHHhcccccccCcchhcc
Q 007077 542 RWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYS-MLDRMAKTLLDSKQNAMEGDNLVAIN 617 (619)
Q Consensus 542 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (619)
++++|++-++++.+..+...-. ...+ ....|.+.+-.. +-.++..++++.|.-+..-=||-.=|
T Consensus 183 k~eealeDyKki~E~dPs~~ea------r~~i------~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStdn 247 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREA------REAI------ARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTDN 247 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHH------HHHH------HhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 9999999999998754332110 0000 013455544333 34567788888886655444443333
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.48 E-value=1.1 Score=43.26 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=37.1
Q ss_pred HHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007077 264 GYVNCGQLEKARDLFDRSPVR-------DIVLWTAMINGYVQ---FNRFDEAVALFREMQIIRLKPDKFILVALLTGC 331 (619)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (619)
+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..+|..+...|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344444555555555444322 11122233444555 677788888877765555566666776666554
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.13 Score=46.55 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=60.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALL 500 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~ 500 (619)
.|+.-+..+ ..|++..|...|...++.+.-.+ ....+..|..++...|++++|...|..+.. .|..+ .+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455554443 45667777777777776431110 133455577777777777777777665541 12111 223455556
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
......|+.++|...++++.+.-|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6666677777777777777777776655
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.42 E-value=0.11 Score=50.84 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL----EHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
...++.+..+|...|++++|...|+...+. .|+. ..|..+..+|...|+.++|++.+++...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666666677777777777777666533 4552 2366666667777777777777666653
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.16 Score=45.91 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDD----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCL 464 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 464 (619)
|+.-+.. .+.|++..|...|...++. -|+. ..+..|..++...|++++|..+|..+.+.++-.|. ++.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4443333 3455566666666666665 2322 24555666666666666666666666665444343 3556666
Q ss_pred HHHHHhcCCHHHHHHHHhhCC
Q 007077 465 IDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..+..+.|+.++|...|+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 666666666666666666655
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.37 E-value=2.1 Score=38.83 Aligned_cols=221 Identities=17% Similarity=0.078 Sum_probs=143.1
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 300 NRFDEAVALFREMQIIRLK-PDKFILVALLTGCAQLGALEQGKWIHGYINEN-RITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
+....+...+......... .....+......+...+....+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433221 12345555555666666666666666655542 224445556666666777777788888
Q ss_pred HHHhcCCC--C-hhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 378 IFYELREK--D-AASWTSIIC-GLAMNGKINKALELFSQMISGGAKP----DDITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 378 ~~~~~~~~--~-~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
.+...... + ......... .+...|+++.|...+++.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 87776642 2 122333333 688899999999999998653 43 23344444455677889999999999887
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 450 EVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 450 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
.. .+. ....+..+...+...+++++|...+....... +.....+..+...+...|..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 63 233 36778888888999999999999998877332 212233555555555777899999999999998887
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.35 E-value=0.15 Score=40.06 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS----SFHTLLANIYASAN 541 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 541 (619)
-++...|+++.|++.|.+...- .+.....||.-..++.-.|+.++|..-++++.++.-+.. ..|..-+.+|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566788888888888876621 222334588888888888888888888888887754432 23566677888889
Q ss_pred ChHHHHHHHHHHHhCCC
Q 007077 542 RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 542 ~~~~A~~~~~~m~~~~~ 558 (619)
+-+.|..-|+..-..|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999888888876654
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=0.53 Score=47.97 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 476 (619)
....+.|.++++.+.+. -|+...|...- +.+...|++++|.+.|+.......--|. ...+.-+..++.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677899999999887 78877665444 5667789999999999975531011121 2345556777888999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHh
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSA-CRIYGNV-------DMGEKLAALLE 520 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~ 520 (619)
|.+.|.++..... -+..+|.-+..+ +...|+. ++|.++++++.
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999985433 234445444444 3456777 77888887774
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=5.1 Score=42.38 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=36.7
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVK 143 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 143 (619)
.+.|++++|...|-+-... +.| ..++.-+....+...--.+++.+.+.|+. +...-+.|+++|.+.++.++-.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 3445555555555443322 111 12333333333334444455555555542 3333345556666666665555
Q ss_pred HHHccCC
Q 007077 144 KLFDEMP 150 (619)
Q Consensus 144 ~~~~~~~ 150 (619)
+..+...
T Consensus 452 efI~~~~ 458 (933)
T KOG2114|consen 452 EFISKCD 458 (933)
T ss_pred HHHhcCC
Confidence 5555443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.16 E-value=1.4 Score=43.47 Aligned_cols=146 Identities=9% Similarity=0.071 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 007077 403 INKALELFSQMIS-GGAKPDDI-TFIGVLSACS---------HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA 471 (619)
Q Consensus 403 ~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 471 (619)
.+.|+.+|.+.+. ..+.|+-. .|..+..++. ......+|.+.-+...+. -+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 3556777777762 22355532 3333332221 123445566666666643 133455666666667777
Q ss_pred CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH--HHHHHHHHhCCChHHHHHH
Q 007077 472 GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH--TLLANIYASANRWEDVTNV 549 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~ 549 (619)
|+++.|..+|++... -++....+|......+...|+.++|.+.++++.+++|....+- ...++.|+. ...++|.++
T Consensus 352 ~~~~~a~~~f~rA~~-L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKI-HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhh-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 789999999988772 2344444566667777888999999999999999999765433 233334554 445666666
Q ss_pred HHH
Q 007077 550 RQK 552 (619)
Q Consensus 550 ~~~ 552 (619)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.02 E-value=1.5 Score=44.12 Aligned_cols=129 Identities=22% Similarity=0.138 Sum_probs=71.6
Q ss_pred HhCCCHHHHHHHHH--hcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 367 AKCGLIEKALEIFY--ELR-EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 367 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.-.|+++++.++.. ++. .-...-.+.++.-+.+.|.++.|+++-+. ..+ -.....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHH
Confidence 34455666544443 111 11233455666666677777777765432 111 1223345677777776
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+.+. .++...|..|.+...++|+++-|++.|.+.. + |..|+-.|...|+.+.-.++.+.+....
T Consensus 340 ~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6432 2456678888888888888888888887776 2 6777777777777776666666655443
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.01 E-value=0.15 Score=45.96 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=82.6
Q ss_pred hHHHHhhccCC--CCCcccHHHHHHHHHhc-----CChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccC---------
Q 007077 39 LYAEKIFGSIQ--SPCLLAYNLLIKAFAKK-----GSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLG--------- 102 (619)
Q Consensus 39 ~~a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--------- 102 (619)
-..++.|...+ ..|-.+|-+.+..+... +..+--...++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456666666 56778888888877643 556666778899999999999999999999875432
Q ss_pred -------ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCC-hhHHHHHHccCC
Q 007077 103 -------EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGK-ICNVKKLFDEMP 150 (619)
Q Consensus 103 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 150 (619)
+-.-+.+++++|...|+.||..+-..|++++.+.+- ..+..++.--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 123478899999999999999999999999988765 233344433333
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.99 E-value=0.048 Score=31.92 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4777777788888888888888888887776
No 255
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.96 E-value=0.069 Score=31.16 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.|..+...+...|++++|++.++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46666777777777777777777777777764
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.74 E-value=1.1 Score=36.48 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=60.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
.-.....+.|++++|.+.|+.+... -|- ...-..++.++.+.|+++.|...+++.++.+...|++ .|.....+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHH
Confidence 3344455667777777777776655 221 2355566666677777777777777776654444442 23333333
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
++.-...+ ..+..+..... ..+....|...|+.++..-|++..
T Consensus 92 L~~~~~~~---~~~~~~~~~dr---------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFFRSDR---------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhccccc---------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 33211111 11111110000 112245677777888888887764
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.69 E-value=0.36 Score=38.80 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHH
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMY 234 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~ 234 (619)
....|+..+..+++.+++..+++..|.++.+.+.+. ++.+..++..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345566666666666666666666666666666555 444455555555443
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.68 E-value=3.2 Score=41.20 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-cccHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN-EIIVPLYGALLSA 502 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~ 502 (619)
+-..+..++.+.|+.++|.+.+.++.+.+...........|+.++...+.+.++..++.+-..... ......|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788999999999999987533222355677899999999999999999988753211 1223345554433
Q ss_pred HHHcCC---------------HHHHHHHHHHHhccCCCCcc
Q 007077 503 CRIYGN---------------VDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 503 ~~~~g~---------------~~~a~~~~~~~~~~~p~~~~ 528 (619)
....|+ -..|.+.+.++.+.+|.-+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 333333 12355778888777776665
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.65 E-value=1.8 Score=34.42 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=79.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
+.-.|..++..++..+.... . +..-++.++.-....-+-+-..+.++.+-+- .|. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S--s-ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--S-NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--S--HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc--C-CccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHH
Confidence 34567788888888877654 1 2223333333222223333444444444332 222 23344444
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....+-.+-. . .......++.....|+-+.-.+++..+.+-+..+|.+...++.+|.+.|+..++.+++++.-+.
T Consensus 75 Vi~C~~~~n~--~---se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 75 VIECYAKRNK--L---SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc--h---HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4444433321 1 1125566777889999999999998888767778888999999999999999999999999998
Q ss_pred CCc
Q 007077 557 GVR 559 (619)
Q Consensus 557 ~~~ 559 (619)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=6.9 Score=43.25 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=110.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
-..+.++.+=+-+++++.+ .+++..-|. |+ ...++++.|..-+..+- ...+.-.++.-.+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~--m~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKK--METLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhh--chhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 3445566666666666553 222221111 00 12344455544443322 22344455555667777777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 376 LEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
+.++..-.+.-...|.+...-+...+.+++|.-.|+..-+. .-.+.+|...|+|.+|..+..++.. .
T Consensus 928 L~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~----~ 994 (1265)
T KOG1920|consen 928 LALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE----G 994 (1265)
T ss_pred hheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC----C
Confidence 77765444444455555666666777888887777764322 2346677788888888888776532 1
Q ss_pred CC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 456 PK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 456 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
.+ ..+-..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|.++.....
T Consensus 995 ~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 995 KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 22 223356777788888888888888777643 2333444556667777777765553
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.62 E-value=4.1 Score=38.41 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=11.2
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~ 519 (619)
.+.+.++++.|.+.|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345567777777766644
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.48 E-value=2.3 Score=35.05 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
..++..+...+.+......++.+...+ ..+....+.++..|++.. .......++. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 344444545555555555555555544 233344555555554432 2222232221 0111222234445555
Q ss_pred cCCHHHHHHHHhhC
Q 007077 471 AGLLDEAEELIRKI 484 (619)
Q Consensus 471 ~g~~~~A~~~~~~~ 484 (619)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555554
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=3.5 Score=36.76 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
.|..-..+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444555555666666665555443
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.34 E-value=2.1 Score=34.01 Aligned_cols=134 Identities=11% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhCCCHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVV---ATALIEMYAKCGLIE 373 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 373 (619)
.-.|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+ ..|... ...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 34566777777777665432 333444444433333333333333333322 222221 1234555555443
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 374 KALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
+.......+..+...|+-+.-.+++..+...+ +|++.....+..+|.+.|+..++.+++.++.++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 23334455677778888888888888876532 677777788888888888888888888887765
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.22 E-value=6.1 Score=38.80 Aligned_cols=148 Identities=13% Similarity=0.036 Sum_probs=79.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKP---DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEH 460 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 460 (619)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45667777888888888888888888777643211 2233344455556677778888777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh--CCCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRK--IPNENNEIIVPLYGALLSACRIY------GNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
...+...+.. ....... ............+..+..-+... ++.+++...|+.+.+..|.....|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111110000 0000000 00000111112233333333344 78888999999999999998888888
Q ss_pred HHHHHHhC
Q 007077 533 LANIYASA 540 (619)
Q Consensus 533 l~~~~~~~ 540 (619)
++..+.+.
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 87765543
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=2.4 Score=37.42 Aligned_cols=93 Identities=4% Similarity=-0.012 Sum_probs=47.6
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCC--CCCCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH-------
Q 007077 464 LIDLLGRA-GLLDEAEELIRKIP--NENNEIIVP---LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH------- 530 (619)
Q Consensus 464 l~~~~~~~-g~~~~A~~~~~~~~--~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~------- 530 (619)
+.+.|... .++++|+..++... -.+...+.. .+.-+...-...+++.+|+.+|+++..-.-+++..-
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 45566666655443 012222222 222233334567899999999999876555554321
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 531 TLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..-+-++.-.++.-.+...+++-.+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 12222333335555566666666553
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.08 E-value=1.3 Score=43.87 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..++.+.|+.++|++.++.+.+..|. +..++..|+.+|...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444555556666666666665554443 233455566666666666666666655543
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.02 E-value=0.54 Score=42.49 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=71.9
Q ss_pred HHHccCC--CCChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------------
Q 007077 276 DLFDRSP--VRDIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG------------- 335 (619)
Q Consensus 276 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 335 (619)
+.|.... .+|-.+|-+.+..|.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 4566666666666644 3455666667788888999999999999988765542
Q ss_pred ---cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 007077 336 ---ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI 372 (619)
Q Consensus 336 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (619)
+-+.+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999887753
No 269
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.85 E-value=11 Score=40.25 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCC
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALK 204 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 204 (619)
|....-.+|-.+.|.|++++|.++...... ........+...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCC
Confidence 444555788889999999999999976655 55666678888888887653
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.76 E-value=0.21 Score=39.23 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=52.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
-+....|+.+.|++.|.+++.+.|..+.+|+.-+.+|.-+|+.++|+.-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999998764
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=3.9 Score=34.37 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=85.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHHhcC
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCL--IDLLGRAG 472 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 472 (619)
+++.+..++|+.-|..+.+.|...-++ ............|+...|...|+++-....+ |-+. -...| ...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 356778888888888888776543322 2333344557788888888888888654222 2211 12222 23456788
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
.+++....++.+...+++.-...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999888888887666666666677788788889999999999888865
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.59 E-value=3.6 Score=33.95 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc
Q 007077 56 YNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW 100 (619)
Q Consensus 56 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (619)
-..++..+...+.+.....+++.+...+ +.+...++.++..+++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3445555555555555555555555544 2344455555555554
No 273
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.43 E-value=13 Score=39.81 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=96.5
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHhHHCCCCCCccc----
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFA-KKGSFRKSLLLFSKLRERGVSPDNFT---- 90 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~---- 90 (619)
-+.+...|..||.+-. +| ++.+.+-+.--|.....++-.+...+. ...+++.|...+++.....-+++-.-
T Consensus 26 ~~~~l~~Y~kLI~~ai--~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 26 SEEQLKQYYKLIATAI--KC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred ChhhHHHHHHHHHHHH--HH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3445566666666554 21 222222111111224455666666666 56788888888887654432322221
Q ss_pred -HHHHHHHHhccCChhHHHHHHHHHHHhCCC----CChhhHHHH-HHHhHhcCChhHHHHHHccCCC-----CC--eecH
Q 007077 91 -YPFVFKAVGWLGEVKKGEKVHGYVVKTGLE----FDTYVCNSI-MDMYGVLGKICNVKKLFDEMPD-----KD--VVSW 157 (619)
Q Consensus 91 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~ 157 (619)
-..++..+.+.+... |...++..++.--. +-...+.-+ +..+...++...|.+.++.+.. .| +..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 223344455544444 77777776543211 112233333 2333333678878777776542 12 2233
Q ss_pred HHHHHHH--HcCCChhHHHHHHHHhHhc---C-----CCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHH
Q 007077 158 NVSISGH--VKCMRFEDAVDVFRRMRQG---C-----NLMPDEGTVVSTLSACT--ALKNLELGKEIHRYINQ 218 (619)
Q Consensus 158 ~~li~~~--~~~g~~~~A~~~~~~m~~~---~-----~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 218 (619)
-.++.+. .+.+.++++++.++.+... . ...|-...|..++..|+ ..|++..+...+..+.+
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333 3456566677666665220 0 11233445666666543 44565566666555544
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.40 E-value=0.17 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.22 E-value=7.1 Score=38.31 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=54.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.....+|..++..+.+.|+++.|...+.++....+. .+.....-++.+...|+..+|...++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334456999999999999999999999998876522 4566677889999999999999999888763
No 276
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.09 E-value=4.8 Score=35.23 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 007077 370 GLIEKALEIFYELR--EK-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 370 g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
|-+.-|.--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|+++-|.+=+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444444444332 23 3567888888888888999999988888876 443 233333333455678888887766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh-hCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIR-KIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
...-..-.-.|-...|-.+. ...-++.+|..-+. +.. ..+... |...+-.+. .|++.+ +.+++++.....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~---WG~~iV~~y-LgkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQ---WGWNIVEFY-LGKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhh---hhHHHHHHH-HhhccH-HHHHHHHHhhcc
Confidence 65554322223233333222 23346677765443 333 222222 444443322 122211 223344433333
Q ss_pred CC-------cchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 525 KD-------SSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 525 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
++ ..+|.-|++-|...|..++|..+++-....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 32 23578889999999999999999998876554
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.98 E-value=0.2 Score=29.20 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+|..+...+...|++++|...++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566666667777777777777777666663
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.75 E-value=4.1 Score=34.01 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=63.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
.-...++.+++..+++.+.- +.|... .-..-...+.+.|++.+|..+|+++...+ +..+.-..|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 33567788889888888874 355532 22223445678899999999999986432 2222255666666554443
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
..=....+++.+..++. . -..++..+........|.+
T Consensus 94 ~~Wr~~A~evle~~~d~-~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGADP-D-ARALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCCCh-H-HHHHHHHHHHhccccchhh
Confidence 44444455555555432 2 2344444444444444443
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.65 E-value=0.63 Score=42.91 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+..++..+...|+++.+...++++...+|-+...|..+..+|...|+...|+..++++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555544
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=2.5 Score=35.41 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=68.2
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHH-----HHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhccCcH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSII-----CGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVL--SACSHGGLV 438 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll--~~~~~~g~~ 438 (619)
.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|...|++.-.....|... -...+= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455666666666666655444444332 33556777777777777776653334332 111111 233567777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+......+.+... +-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777666665432 2222333445566666678888888888877764
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.57 E-value=0.41 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 422 (619)
+|..+...|...|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4556666666777777777777776665 5543
No 282
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.39 E-value=18 Score=38.73 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 400 NGKINKALELFSQMISGG-AKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
..+.+.|..++....... +.+... ....+.......+..+++...++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577777777664332 222222 2333332233332245566665554321 1233344444555557777777
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+...+..|..... ....-.-=+..++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777763211 111112233445455777777777777763
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.37 E-value=32 Score=41.61 Aligned_cols=312 Identities=12% Similarity=0.061 Sum_probs=172.2
Q ss_pred HHHHHHHHhcCChhhHHHHhccC----CCCC--chhHHHHHHHHHhcCCHHHHHHHHcc-CCCCChhhHHHHHHHHHHcC
Q 007077 228 NALLDMYCKCGCLSEARELFDEM----PNKN--VICWTSMVSGYVNCGQLEKARDLFDR-SPVRDIVLWTAMINGYVQFN 300 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g 300 (619)
..+..+-.+++.+.+|...+++- .+.+ ...+-.+...|...+++|....+... ...++. ..-|.-....|
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 34555667788888888888772 2221 12234444477777877777666653 333322 23455567789
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 301 RFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
++..|...|+++.+. .|+ ..+++.++......+.++...-..+-.....-+.....++.=+.+--+.++++......
T Consensus 1464 ~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999875 444 66788888888888888777665554443321112222233344446777777776666
Q ss_pred HhcCCCChhhHHHH--HHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH--------
Q 007077 380 YELREKDAASWTSI--ICGLAMNGKIN--KALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNT-------- 447 (619)
Q Consensus 380 ~~~~~~~~~~~~~l--~~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-------- 447 (619)
. ..+..+|.+. +..+.+..+-+ .-....+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5566666655 22222222211 1112333333221111 2222222222222221111
Q ss_pred --hHHhcCCCCChh------HHHHHHHHHHhcCCHHHHHHHHhh------CCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 448 --MTEVYQIQPKLE------HYGCLIDLLGRAGLLDEAEELIRK------IPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 448 --~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
.....++.++.. -|..-+..-....+..+-+--+++ |...-......+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111112333321 121111111111112222111211 111224455677999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
...-.+.+.. -+.++...+..+...|+-..|+.++++-.+..
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9887776666 45567889999999999999999999987543
No 284
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.29 E-value=13 Score=37.10 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
-...-+++..+..+..+.-+..+..+|..-| .+...|..++.+|... ..++-..++.++.+..+ .|++.-..|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 3445566777777777777777777877743 4566777788877777 55666667777766543 344445556666
Q ss_pred HHhCCCHHHHHHHHHhcCCCC---------hhhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcc
Q 007077 366 YAKCGLIEKALEIFYELREKD---------AASWTSIICGLAMNGKINKALELFSQMIS-GGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~ 435 (619)
|.+ ++.+.+..+|.++..+- -..|.-+... -..+.+..+.+..+... .|..--.+.+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 655 77777777777654221 1133333321 12334444444444432 22222333444444555556
Q ss_pred CcHHHHHHHHHHhHH
Q 007077 436 GLVDEGRRFFNTMTE 450 (619)
Q Consensus 436 g~~~~a~~~~~~~~~ 450 (619)
.++.+|++++..+.+
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 666666666665554
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.22 E-value=8.7 Score=34.82 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGG-AKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
.|-.-+..-.+.|++++|.+.|+.+.... ..| ...+...++.++.+.++++.|....++....++-.||.. |-..+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34444555668899999999999998762 111 234677777888899999999999999998887777753 333344
Q ss_pred HHH
Q 007077 467 LLG 469 (619)
Q Consensus 467 ~~~ 469 (619)
++.
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 433
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.86 E-value=4 Score=35.25 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL------EH 460 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 460 (619)
.+..+..-|.+.|+.+.|++.|.++.+....|... .+..++..+...|++..+.....+.........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666777777777777777766664444432 45566666666677777766666654431111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|..+ .+...|++.+|.+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2335678888888887766
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.86 E-value=0.3 Score=29.01 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
|..|...|.+.|++++|+.+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777788888888888888887543
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.70 E-value=10 Score=34.43 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCChh
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQI---IRLK--PDKFILVALLTGCAQLGALEQGKWIHGYINEN-----RITVDAV 357 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 357 (619)
+...++..+.+.|++++.+..|++|.. +.+. -+..+.+.++.-.+...+.+.....++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 345567777777888887777777642 1121 23345666666666555555554444432211 0011112
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK---------------DAASWTSIICGLAMNGKINKALELFSQMISGG-AKPD 421 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 421 (619)
+-+.|...|...|++.+-.++++++... -...|..=|..|....+-.+...+|++.+.-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345677777778888888777776521 13456777788888888888888888765432 2344
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCCC--CCh---hHHHHHHHHHHhcCCHHHHHHHHhh--CCCCCC
Q 007077 422 DITFIGVLSAC-----SHGGLVDEGRRFFNTMTEVYQIQ--PKL---EHYGCLIDLLGRAGLLDEAEELIRK--IPNENN 489 (619)
Q Consensus 422 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~ 489 (619)
+.. ..+++-| .+.|.+++|..-|=+..+.+.-. |.. --|..|..++.++|- .-|+. ...-.+
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 443 3455555 35788888765443333322221 221 235556677777661 11111 111224
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.|...+.+.++.+|. .+++.+-+++++.-..---++|.+.
T Consensus 301 dPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred CHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHH
Confidence 555556777887775 4566666666554444334455433
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.65 E-value=0.77 Score=42.73 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=52.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
..-|.++|.+++|+..|...+. +.| +..++..-..+|.+...+..|..-.+.... -+......|.--+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhHHHHHHHHHHHHHHHHHh
Confidence 3345566666666666665553 234 555555556666666666666555444442 12223333444444444556
Q ss_pred CHHHHHHHHHHHhccCCCCcc
Q 007077 508 NVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+..+|.+-++.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 666666666666666666433
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.23 E-value=1.5 Score=36.44 Aligned_cols=81 Identities=25% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 460 HYGCLIDLL---GRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 460 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
+.+.|++.+ .+.++.+++..++..+. -+|..+...++...+ +...|++.+|+++++.+.+..|..+..-..++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444454443 35677777777777655 345555544444443 567788888888888877777777765566666
Q ss_pred HHHhCCC
Q 007077 536 IYASANR 542 (619)
Q Consensus 536 ~~~~~g~ 542 (619)
++...|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 6665555
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.97 E-value=0.8 Score=42.64 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
.+-|.++|.+++|+..|.+.+.. .| |.+++..-..+|.+...+..|..=....+.. -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 46799999999999999998876 67 8899999999999999988887766665532 123456666654
Q ss_pred CHHHHHHHHh
Q 007077 473 LLDEAEELIR 482 (619)
Q Consensus 473 ~~~~A~~~~~ 482 (619)
.-.+++..+.
T Consensus 173 ~AR~~Lg~~~ 182 (536)
T KOG4648|consen 173 QARESLGNNM 182 (536)
T ss_pred HHHHHHhhHH
Confidence 4444443333
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.96 E-value=1.6 Score=35.69 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=42.7
Q ss_pred hcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 470 RAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..++++++..++..+. -.|..+...++...+ +...|++++|.++++.+.+..|..+..--.++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4667777777766554 344545443444433 5566777777777777766666665545555666665555
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.94 E-value=4.3 Score=34.98 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=57.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
...|++++|..-|...... +++. ...|..-..++.+.+.++.|++--.+...- .+.....+.--..+|.+..
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhHHHHHHHHHHHHhhh
Confidence 3445555555555554432 1221 123333445566677777777766665522 2222111222244677888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
.+++|+.-|+++.+.+|....+....+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 89999999999999999876655544443
No 294
>PRK09687 putative lyase; Provisional
Probab=90.85 E-value=14 Score=34.68 Aligned_cols=62 Identities=11% Similarity=-0.122 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++..+-...+.++++.|+ ..|+..+-+....++ + ....+.++...|.. +|...+..+.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-~----~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-V----GDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-h----HHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444444555555554 233333333332222 1 22344444555553 45555555554444
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=2.5 Score=39.09 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-D-----AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
.|.+....+...++..-....+++++...+-++... + ..+-.+.+..+ -.-++++++.++..=++.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 455556666666776666778888888888777632 1 11112222322 3347789999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887766554
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=11 Score=33.46 Aligned_cols=61 Identities=7% Similarity=0.158 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHH---H--HHHHHHc-CCHHHHHHHHHHHhccCCCCcc
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGA---L--LSACRIY-GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
-+..+++.+|+++|++........+..-|.. + ...|.-. .+.-.+.+.+++..+++|.-..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3456778888888877652222111111221 1 1223333 6677777888888888887443
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.79 E-value=7.2 Score=33.04 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=73.5
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC
Q 007077 73 LLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK 152 (619)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 152 (619)
++.++.+.+.+++|+...+..+++.+.+.|+... +..++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455566677788888888888888888887654 334445555555544433332222 2223333333333322
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYI 216 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (619)
=...+..++..+...|++-+|+++.+.... .+......++.+....++...--.++...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223466677788888888888888877532 11222234555555555554444444433
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=12 Score=33.53 Aligned_cols=16 Identities=13% Similarity=-0.222 Sum_probs=7.0
Q ss_pred HHHcCCHHHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAAL 518 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~ 518 (619)
+....++..|++.++.
T Consensus 200 ~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 3333444444444444
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.67 E-value=2.8 Score=34.26 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHH---hccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHH
Q 007077 421 DDITFIGVLSAC---SHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVP 494 (619)
Q Consensus 421 ~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 494 (619)
+..+.+.++... ...++.+++..+++.+.- +.|+ ..++ -+..+...|++.+|..+|++....+....
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-- 78 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPP-- 78 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCch--
Confidence 344555555543 468899999999999874 3555 3333 34457789999999999999985543222
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 495 LYGALLSACRI-YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 495 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.-..|...|.. .||. . |...+......|.-.++..+.+.+.
T Consensus 79 ~~kAL~A~CL~al~Dp------------------~-Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 79 YGKALLALCLNAKGDA------------------E-WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhcCCh------------------H-HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 13344433433 2332 2 5566666666667777777777766
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.58 E-value=2.2 Score=39.44 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMIS-----GGAKPDDITFIG 427 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 427 (619)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667888888888888888888887643 667888999999999999999988888765 577777766555
Q ss_pred HHHH
Q 007077 428 VLSA 431 (619)
Q Consensus 428 ll~~ 431 (619)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.46 E-value=0.35 Score=28.27 Aligned_cols=32 Identities=19% Similarity=0.041 Sum_probs=24.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHH
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEAR 244 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 244 (619)
++..++..|.++..|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555567778888888888888888888875
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.45 E-value=3.1 Score=36.35 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH--HHHcCCHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA--CRIYGNVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~ 511 (619)
.|-+.-|+-=|.+.. .+.|+ +.+||.+.--+...|+++.|.+.|+...+- ++... |..+-.+ +.-.|++..
T Consensus 78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~--Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYN--YAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcch--HHHhccceeeeecCchHh
Confidence 344445554444444 44555 556777777777778888888888776633 22221 3333222 334577777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
|.+-+.+....+|+||. ......+-...=+..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf-R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF-RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH-HHHHHHHHHhhCCHHHHHHHH
Confidence 77777777777777775 333333333334455555433
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.44 E-value=7.8 Score=36.69 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 404 NKALELFSQMISGGAKPDDI--TFIGVLSACSHGGL--VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. ++++...+|..++-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 56777888888888777643 34444443332222 45788888888776 8888877776655443
No 304
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=15 Score=34.09 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE 384 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 384 (619)
....|+...+...++...... +-+....-.+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345666666666666665543 23344555677777777777777777777664
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.94 E-value=4.4 Score=35.00 Aligned_cols=63 Identities=8% Similarity=0.135 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF--ILVALLTGCAQLGALEQGKWIHGYINE 349 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (619)
..+..+...|++.|+.+.|++.|.++.+....|... .+-.++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457778888888888888888888887766555443 455667777777777777766665543
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.89 E-value=14 Score=34.08 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++.....|...|.+.+|.++.+++..++|-+...+..|...|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556789999999999999999999999999999999999999998888888888853
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.73 E-value=12 Score=31.82 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG--LLDEAEELIRKI 484 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 484 (619)
++.++.+.+.|+.|+...+..+++.+.+.|.+..-..+++. ++-+|.......+-.+.... -..-|++++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34455555666677777777777777777766555444332 44444333332222221111 133344455444
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
... +..++..+...|++-+|.++.+.....+.-++ ..+..+-.+.++..-=..+++-..+
T Consensus 89 ~~~--------~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GTA--------YEEIIEVLLSKGQVLEALRYARQYHKVDSVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh--------HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 422 55556666677777777777666543332222 2333444444444443444444433
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.72 E-value=8.8 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.-++++...|+-++|..-|++....
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3455555555555555555555543
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.45 E-value=0.55 Score=25.38 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888887765
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.62 E-value=1 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.22 E-value=6.3 Score=40.06 Aligned_cols=151 Identities=21% Similarity=0.131 Sum_probs=101.1
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
...|+++.|..++..+.+ ...+.++.-+.+.|..++|+++- ..||. -|. ...+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hhh----hhhhcCcHHHHHHHHH
Confidence 345677777776666553 23344555666677777776542 12322 222 2346688888888765
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
+. .+..-|..|.++....|++..|.+.|.+.. + |..|+-.+...|+-+.-..+.....+....|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d---~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------D---LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------c---hhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 43 345678999999999999999999998765 2 7777777888888776666666666555544
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.. ..+|...|+++++.+++.+-
T Consensus 726 ~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hH-----HHHHHHcCCHHHHHHHHHhc
Confidence 43 33567789999998887654
No 312
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.06 E-value=41 Score=36.05 Aligned_cols=398 Identities=10% Similarity=0.016 Sum_probs=189.8
Q ss_pred CCChhHHHHhhccCCC-CCc-ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHH
Q 007077 35 HGNLLYAEKIFGSIQS-PCL-LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHG 112 (619)
Q Consensus 35 ~g~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 112 (619)
....++....+++-+. |-. ..-..-+..+.+.+++...++++.. .+.+...-.....+....|+.++|.....
T Consensus 79 ~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~ 153 (644)
T PRK11619 79 NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAK 153 (644)
T ss_pred cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356666666666552 221 2223334455566677666653211 13333344555666666677666655555
Q ss_pred HHHHhCCCCChhhHHHHHHHhHhcCC------------------hhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHH
Q 007077 113 YVVKTGLEFDTYVCNSIMDMYGVLGK------------------ICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 113 ~~~~~g~~~~~~~~~~li~~~~~~g~------------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
.+-..|- ..+..++.++..+.+.|. ...|..+...+..........++... .++..+.
T Consensus 154 ~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~ 229 (644)
T PRK11619 154 ELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVE 229 (644)
T ss_pred HHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHH
Confidence 5444332 233445555555554443 33333333333211111111122211 1122222
Q ss_pred HHHHHhHhcCCCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChhhHHHHhc
Q 007077 175 DVFRRMRQGCNLMPDEGTVVSTLSACT--ALKNLELGKEIHRYINQELEFTP----IMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
.++. .+.|+...-...+.++. ...+.+.|...+.........+. .+...+.......+...+|...++
T Consensus 230 ~~~~------~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~ 303 (644)
T PRK11619 230 TFAR------TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRD 303 (644)
T ss_pred HHhh------ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 2211 12222211111111211 23456777777777655422221 223344433344333567777777
Q ss_pred cCCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 007077 249 EMPN--KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI 323 (619)
Q Consensus 249 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 323 (619)
.... .+......-+..-...++++.+...+..|+.. ...-..-+..++...|+.++|...|+++.. ..+
T Consensus 304 ~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--- 377 (644)
T PRK11619 304 DVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--- 377 (644)
T ss_pred hcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC---
Confidence 6554 24444555555666888999888888887632 334455577777778999999999998743 122
Q ss_pred HHHHHHHHHccCcHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhCC
Q 007077 324 LVALLTGCAQLGALEQG-KWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-KDAASWTSIICGLAMNG 401 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g 401 (619)
|-.++.+ .+.|..-.. ...... ....+...+ ...-+..+...|....|...+..+.. .+......+.......|
T Consensus 378 fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 378 FYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 3222221 112211000 000000 000001111 11234456677888888888776553 34445555555566778
Q ss_pred ChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 402 KINKALELFSQMISGG----AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
.++.++.........+ --|- .|...+..+...-.++.+.-. --+....++.|+..+
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv~-ai~rqES~f~p~a~S 513 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYAM-AIARQESAWNPKARS 513 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHHH-HHHHHhcCCCCCCcc
Confidence 8887777665432210 0121 355566655555455554432 222333377777543
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.99 E-value=4.1 Score=30.38 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
+.-++.+-+..+....+.|++....+.+++|.+.+++..|.++|+.++.+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999998875422 24445655553
No 314
>PRK09687 putative lyase; Provisional
Probab=87.33 E-value=26 Score=32.97 Aligned_cols=19 Identities=5% Similarity=-0.304 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHHhcCCh
Q 007077 222 FTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~ 240 (619)
++..+....+.++.+.|+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE 158 (280)
T ss_pred CCHHHHHHHHHHHhccCCH
Confidence 3445555555555555553
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.28 E-value=11 Score=28.46 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIG 427 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 427 (619)
+..+...|++++|..+.+...-||...|.+|... +.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456778899999998888888888888777653 6677777777777777776 555555543
No 316
>PRK10941 hypothetical protein; Provisional
Probab=87.26 E-value=6.4 Score=36.55 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
...+.+-.+|.+.++++.|.++.+.+..+.|+++.-+.--+-+|.+.|.+..|..-++...+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3466677788999999999999999999999999888889999999999999999888887643
No 317
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.22 E-value=11 Score=28.44 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
+++.+.+...++.+++..+.+ +..+...|++++|..+.+....||...|-++-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 444455555554455544332 345667888888888888888888888876644 46777777777
Q ss_pred HHHHHHHcCCCCCHHHH
Q 007077 308 LFREMQIIRLKPDKFIL 324 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~ 324 (619)
-+.+|..+| .|...+|
T Consensus 90 rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777766 4443333
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.06 E-value=0.62 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=8.0
Q ss_pred ChhhHHHHHHHhhcCC
Q 007077 189 DEGTVVSTLSACTALK 204 (619)
Q Consensus 189 ~~~~~~~ll~~~~~~~ 204 (619)
++..|..++..|...+
T Consensus 124 ~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 124 DPELWEQLLKYCLDSK 139 (143)
T ss_dssp SSHHHHHHHHHHCTST
T ss_pred cHHHHHHHHHHHHhcC
Confidence 3455555555554443
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.98 E-value=1.5 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.|..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666665554
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.97 E-value=47 Score=35.56 Aligned_cols=192 Identities=12% Similarity=0.010 Sum_probs=106.8
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhHH-CCCCCCc--ccHHHHHHHHh-ccCChhHHHHHHHHHHHhCCCCCh--
Q 007077 50 SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE-RGVSPDN--FTYPFVFKAVG-WLGEVKKGEKVHGYVVKTGLEFDT-- 123 (619)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~-- 123 (619)
+.++..|..||.. |+.-++-..+ ..++|.. .++..+...+. ...+++.|+..+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3456677777755 5555665553 3333322 34555555555 567899999999877643322222
Q ss_pred ---hhHHHHHHHhHhcCChhHHHHHHccCCC----CCee----cHHHH-HHHHHcCCChhHHHHHHHHhHhcCC--CCCC
Q 007077 124 ---YVCNSIMDMYGVLGKICNVKKLFDEMPD----KDVV----SWNVS-ISGHVKCMRFEDAVDVFRRMRQGCN--LMPD 189 (619)
Q Consensus 124 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~p~ 189 (619)
.....++..|.+.+... |...+++..+ .... .+..+ +..+...+++..|++.++.+..... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12345567777777655 7777776542 1111 22222 2233334799999999998866232 2333
Q ss_pred hhhHHHHHHHhh--cCCChHHHHHHHHHHHHh---c-------cCChhHHHHHHHH--HHhcCChhhHHHHhccCC
Q 007077 190 EGTVVSTLSACT--ALKNLELGKEIHRYINQE---L-------EFTPIMGNALLDM--YCKCGCLSEARELFDEMP 251 (619)
Q Consensus 190 ~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~---~-------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 251 (619)
...+..++.+.. ..+..+.+.+....+... + +|...++..+++. +...|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555543 345556666666555333 1 2334555556554 455677777776665553
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.82 E-value=4.8 Score=26.40 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
...++-++.+.|++++|.+..+.+.+ .+|...+...+...+.+++.+.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 34577778999999999999999987 37777888888788888777665
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.62 E-value=1.4 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=10.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 007077 532 LLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.++.+|.+.|++++|.+.++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.57 E-value=4.5 Score=30.54 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 404 NKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
-+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+-+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566667777778899999999999999999999999999999887533 333367666643
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.51 E-value=1.4 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++..|+.+|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 467888999999999999999988764
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.29 E-value=63 Score=36.34 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...|..++...|..++|.++-+...
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~f~ 1211 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKAFD 1211 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456777788888877776654443
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.28 E-value=0.85 Score=37.87 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhH
Q 007077 93 FVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFED 172 (619)
Q Consensus 93 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (619)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888777667788889999999999888888888874332 444567777777788888
Q ss_pred HHHHHHHhH
Q 007077 173 AVDVFRRMR 181 (619)
Q Consensus 173 A~~~~~~m~ 181 (619)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888777763
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=51 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=34.6
Q ss_pred hhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHH
Q 007077 124 YVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
.+....|..+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 456667777777777887777777777666666666666666666554443
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.99 E-value=1.9 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..++.+|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 588999999999999999999999875
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.77 E-value=55 Score=35.21 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch-hHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHH
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI-CWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWT 290 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 290 (619)
.++.+.+.--.+....+.|+.+|.+.++.++-.+..+...+.... -....+..+.+.+-.++|.-+-.+-.. +.....
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ 497 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLD 497 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHH
Confidence 333344433333444466777777777777766666655421111 134445555555555665554433332 222222
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREM 312 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m 312 (619)
.+ +-..+++++|++.+..|
T Consensus 498 il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 498 IL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HH---HHHhcCHHHHHHHHhcC
Confidence 22 33456777777777655
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.21 E-value=40 Score=35.51 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHcC
Q 007077 337 LEQGKWIHGYINENR 351 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~ 351 (619)
...+.+.++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 445666666666655
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.98 E-value=2 Score=23.76 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
|..+...+...|+++.|...++...+..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444455555555555555555555444
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.94 E-value=3.5 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.+.-++.+.|++++|.+..+.+.+.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567899999999999999999999999884
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.79 E-value=6.8 Score=34.10 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWE 544 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 544 (619)
.+.|+ ++|.+.|-.+...|...++.....|+.-| ...+.++++.++-++.++.+. |+.++..|+.+|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44455 66777777777665555554455555444 467788888887777665433 5667788888888888888
Q ss_pred HHH
Q 007077 545 DVT 547 (619)
Q Consensus 545 ~A~ 547 (619)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.72 E-value=26 Score=30.43 Aligned_cols=118 Identities=9% Similarity=-0.025 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHH
Q 007077 405 KALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL----EHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 478 (619)
+.....+++........-. +-..+...+...|++++|...++..... +.|. ..--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5555556666542111111 2223345667788888888888876632 2221 12234566778889999999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..++.....+-.+. ....-.+.+...|+-++|+..|+++.+.+++++
T Consensus 147 ~~L~t~~~~~w~~~--~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 147 KTLDTIKEESWAAI--VAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhccccccHHHH--HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99987764321111 122335678899999999999999988874443
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.70 E-value=6.9 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred hhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 170 FEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
.-++.+-++.+.. ..+.|++....+.+++|.+.+++..|..+++-+......+...|..++
T Consensus 23 ~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3345555666655 678888888888889998888888888888877765443444554444
No 336
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=60 Score=34.44 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=47.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
++...|+-++|-.+.++|.... .|-.. -..++..+|+-.|+-....+++.-.+. ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3455566667777777776542 22111 233444566666666666666655444 334455555555555555566
Q ss_pred HHHHHHHHhhCC
Q 007077 474 LDEAEELIRKIP 485 (619)
Q Consensus 474 ~~~A~~~~~~~~ 485 (619)
++.....++-+.
T Consensus 587 p~~~~s~V~lLs 598 (929)
T KOG2062|consen 587 PEQLPSTVSLLS 598 (929)
T ss_pred hhhchHHHHHHh
Confidence 666555554444
No 337
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.03 E-value=41 Score=32.25 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-----CChhH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQI-IRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRIT-----VDAVV 358 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 358 (619)
+|-.+..++-+..++.+++.+-+.-.. .|..|. .....++..++...+.++++.+.|+...+-... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555444455555554443222 112221 112233455555666666666666655432111 12346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-------CChh------hHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCC
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELRE-------KDAA------SWTSIICGLAMNGKINKALELFSQMI----SGGAKPD 421 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 421 (619)
+..|...|.+..++++|.-+..+..+ .|.. +..-|.-++...|....|.+.-++.. ..|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777776655444321 1211 12234455666677666666666543 2343332
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 422 -DITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 422 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2244555666777777777777666654
No 338
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=6.5 Score=36.89 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE---NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
|--=..-|.+..++..|...|.+-... ....+...|+.-..+-...|++..++.-..++..++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334456678889999999999876522 22234445666666667789999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHH
Q 007077 538 ASANRWEDVTNVRQKMK 554 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~ 554 (619)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998887764
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=8.6 Score=35.76 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=71.6
Q ss_pred hCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-CCe-----ecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCh
Q 007077 117 TGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-KDV-----VSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDE 190 (619)
Q Consensus 117 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 190 (619)
.|.+....+...++..-....+++.+...+-++.. |+. .+-.+.++-+. .-++++++.++..-.+ .|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 35555555666666666667778888777766553 211 12223334333 3467789988888888 8999999
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQE 219 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (619)
++++.+++.+.+.++...|..+...++..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888777766
No 340
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.81 E-value=39 Score=31.83 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=16.1
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 007077 534 ANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+....+.++|++|.++++-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445678899999999988543
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.75 E-value=1.5 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+-.+..++.+.|++++|.+.++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556778889999999999998764
No 342
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.71 E-value=52 Score=33.15 Aligned_cols=392 Identities=13% Similarity=0.089 Sum_probs=194.7
Q ss_pred CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 152 KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
.|+..|...+.-+-+.+.+.+.-.+|..|....+..||...+.+.- -+-...+.+.|+.++....+..|.++..+....
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 3888999999888888889999999999987455555544332221 233444599999999999888888888876655
Q ss_pred HHHHhcCChhhH-HHHhccCCC-------CCchhHHHHHH------HHHh------------cCCHHHH-HHHHccCCCC
Q 007077 232 DMYCKCGCLSEA-RELFDEMPN-------KNVICWTSMVS------GYVN------------CGQLEKA-RDLFDRSPVR 284 (619)
Q Consensus 232 ~~~~~~g~~~~A-~~~~~~~~~-------~~~~~~~~li~------~~~~------------~g~~~~A-~~~~~~~~~~ 284 (619)
++-...-.--.+ .+.+..-.. .....|+.... +..+ .+++.+. ........+.
T Consensus 182 rmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~ 261 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPD 261 (568)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 543221000000 001100000 00001111100 0000 0111111 0111111123
Q ss_pred ChhhHHHHHHH----HHH---------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC------cHHH
Q 007077 285 DIVLWTAMING----YVQ---------------FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG------ALEQ 339 (619)
Q Consensus 285 ~~~~~~~li~~----~~~---------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------~~~~ 339 (619)
++.+|.-+..- +.+ ..+.+....+|++..+ .-|+...+...|..|...- .+..
T Consensus 262 np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h 339 (568)
T KOG2396|consen 262 NPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILH 339 (568)
T ss_pred CCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44444433221 111 1112334456665544 2344445555555554322 2333
Q ss_pred HHHHHHHHHHcC-C-CCChhHHHHHHHHHHhCCCHHH-HHHHHHhcCCCChhhHHHHHHHHHhCC-ChHH-HHHHHHHHH
Q 007077 340 GKWIHGYINENR-I-TVDAVVATALIEMYAKCGLIEK-ALEIFYELREKDAASWTSIICGLAMNG-KINK-ALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~-A~~~~~~m~ 414 (619)
...+++...+.+ . +.....|..+.-+++......+ |..+..+....+...|-.-+....+.. +++- -.++|....
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r 419 (568)
T KOG2396|consen 340 TMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLR 419 (568)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 444455444432 1 2344556666666666655433 344443555566667766555554332 2221 122223333
Q ss_pred HCCCCCCHHHHHHHHHHHhccCc-HHH-HH-HHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 415 SGGAKPDDITFIGVLSACSHGGL-VDE-GR-RFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 415 ~~g~~p~~~~~~~ll~~~~~~g~-~~~-a~-~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
..-..+-...+.+.. .|+ ... .. .++..+.. -..|+.. .-+.+++-+.+.|-.++|...+.....- .+
T Consensus 420 ~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp 491 (568)
T KOG2396|consen 420 KQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PP 491 (568)
T ss_pred HHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CC
Confidence 222222233333333 111 111 11 11222222 2234433 3456777788888889999998888743 45
Q ss_pred ccHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 491 IIVPLYGALLSAC--RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 491 ~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
++...|..++..- ....+...+..+|+.+..-...++..|......-...|+.+.+-.++.+..
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 5656666666432 223347777888888765444677767666555556777777777766654
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.21 E-value=7.8 Score=29.34 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 172 DAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 172 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+..+-++.+.. ..+.|++....+.+++|.+.+++..|..+++.+..........|..++.
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 44555555555 6788888888888888888888888888888887775444445555543
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=23 Score=36.25 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 444555544443322 2445566666666666666666666665443 33444444455554443333333
Q ss_pred HHHc
Q 007077 347 INEN 350 (619)
Q Consensus 347 ~~~~ 350 (619)
..+.
T Consensus 718 ~~~~ 721 (794)
T KOG0276|consen 718 AKKQ 721 (794)
T ss_pred HHhh
Confidence 3333
No 345
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.88 E-value=25 Score=33.99 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---CCChHHHHHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS---ANRWEDVTNVRQ 551 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 551 (619)
+.-+.+++++... ++.+...+..++..+.+..+.+...+-++++....|+++..|...++.... .-.+++...++.
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4455666665533 556666788888888888888888899999999999999888777765544 235777777777
Q ss_pred HHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchH-HHHHHHHHHHHHHHHhcccc---cccCcchhccc
Q 007077 552 KMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMK-EIYSMLDRMAKTLLDSKQNA---MEGDNLVAINF 618 (619)
Q Consensus 552 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 618 (619)
+....-.....+. ......-++.+ .+...+-++...+.++|+++ -..|.++.+||
T Consensus 127 ~~l~~L~~~~~~~------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGR------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccc------------cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6653211100000 01111122333 34446778888899999985 56677888887
No 346
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.82 E-value=72 Score=34.15 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=24.6
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCC---CCCeecHHHHHHHHHcC
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMP---DKDVVSWNVSISGHVKC 167 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 167 (619)
.-.+|-.|.|+|++++|.++..+.. .+....+-..+..+..+
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3456667788888888888883322 23334455556666554
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.45 E-value=70 Score=33.74 Aligned_cols=246 Identities=11% Similarity=0.017 Sum_probs=110.8
Q ss_pred HcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----cHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 298 QFNRFDEAVALFREMQI-------IRLKPDKFILVALLTGCAQLG-----ALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+.+.|+.+|+.+.+ .|.++ ....+..+|.+.. +.+.|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34566666666666654 33221 2333444444322 45566666666666652 332222222211
Q ss_pred HHh-CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 366 YAK-CGLIEKALEIFYELREK-DAASWTSIICGLA----MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 366 ~~~-~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
... ..+...|.++|...... ++.++-.+..+|. ...+...|..++++..+.| .|...--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13456677777665533 3333333333332 2345677777777777776 3332222222233333 4555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHH---HHh----cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc----CC
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDL---LGR----AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY----GN 508 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 508 (619)
.+...+..+... +..-....-..+... ... ..+.+.+..++.+....++... ...+.+.|... .+
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a---~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADA---ILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHH---HhhhcceeeecCCCCCC
Confidence 444444443332 211110000001100 000 1244445555555443333322 33333333222 24
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-C--ChHHHHHHHHHHHhC
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASA-N--RWEDVTNVRQKMKEM 556 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~ 556 (619)
++.|...+.++.... +.....++.++... | .+..|.+++++....
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 666666666665554 44455666655543 1 156777777776653
No 348
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=8.4 Score=34.47 Aligned_cols=61 Identities=8% Similarity=-0.168 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+..+..++...|++-++++-...+....|++..+|..-+.+....-+..+|..-+.+..+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3444556677899999999999999999999999999999999999999999988888763
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.17 E-value=1.1 Score=41.91 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..|.+++|++.|...+. -.++....|.--.+++.+.++...|++-+..+.+++|+...-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~-lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE-LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccc-cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45778888888887773 34455445555666778888899999999999999999888888888888888999999999
Q ss_pred HHHHHhCCCccc
Q 007077 550 RQKMKEMGVRKV 561 (619)
Q Consensus 550 ~~~m~~~~~~~~ 561 (619)
+....+.+....
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 998887766544
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.75 E-value=22 Score=35.19 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=44.1
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
+...|+++.+.+.+..... -......+...++......|++++|....+.+..-+-.++.+...-+-.-...|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3445666666655544431 122222335555555556666666666666665544444443332222233445566666
Q ss_pred HHHHHHHhCC
Q 007077 548 NVRQKMKEMG 557 (619)
Q Consensus 548 ~~~~~m~~~~ 557 (619)
..+++....+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 6666655433
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.34 E-value=3.7 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555666666666555543
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.05 E-value=23 Score=28.60 Aligned_cols=74 Identities=11% Similarity=-0.045 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPN-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++..+-..+..++.++.+ ..+.+.++++... .+....-...--|.-++.+.+++++++++.+...+.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 5666666667777776654 3445667766663 211112222334455677888888888888888888777766
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.81 E-value=9.7 Score=33.20 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP---NENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
.|.+.|-.+... +.--++.....|+..|. ..+.++|+.++.+.. ..++.+++..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444332 22234444444444444 345555555554433 222255555566666666666666554
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.03 E-value=72 Score=32.31 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
.|....-+++..+.....+.-.+.+..+|.. .+-..+..++.+|... ..+.-..+++++.+. .-|...+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 3444555566666666666666666655553 3555666667777666 556666677766665 2333333333333
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK------LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACR 504 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 504 (619)
+...++.+.+..+|..+..+ +.|. .+.|.-+.... ..+.+....+..++... +.......+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33446666666666666543 2231 12333333322 23445555555544422 11112222334445566
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
...++.+|++++..+.+.+..|..+...++.-+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 66777777777777776666666655555544433
No 355
>PRK12798 chemotaxis protein; Reviewed
Probab=79.98 E-value=65 Score=31.80 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHhcCCC----ChhhHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHH
Q 007077 369 CGLIEKALEIFYELREK----DAASWTSIICG-LAMNGKINKALELFSQMISGGAKPDDI----TFIGVLSACSHGGLVD 439 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 439 (619)
.|+.++|.+.|..+... ....+-.|+.+ .....++.+|+.+|+...-. -|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 47777777777776633 34455566554 44556788888888886654 55432 3444445567788888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhc---CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYG-CLIDLLGRA---GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
++..+-.....+|...|-..-|. .+...+.+. -..+.-..++..|.... -..+|..+...-...|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~---q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER---QRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh---HHHHHHHHHHHHHHcCcHHHHHHH
Confidence 87777766666554444433222 233333332 23444455555554221 133588888888888999888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHh-----CCChHHHHHHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYAS-----ANRWEDVTNVRQKM 553 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m 553 (619)
.+++..+...+.. -...+..|.. ..+.++|.+.+..+
T Consensus 280 s~~A~~L~~~~~~-~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 280 SERALKLADPDSA-DAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHhccCCCc-chHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 8888777643322 3333333332 24566666555544
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.94 E-value=4 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 531 TLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988543
No 357
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.70 E-value=88 Score=33.18 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=25.8
Q ss_pred HHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 007077 275 RDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347 (619)
Q Consensus 275 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (619)
..++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+.-+.+.|+......+-..+
T Consensus 394 ~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 394 EELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555544444455556666666666666666665533211 1223444455555555554444443333
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.51 E-value=22 Score=28.69 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhcc---CcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 419 KPDDITFIGVLSACSHG---GLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 419 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
.++..+-..+..++.++ .++.+++.+++.+.+. . .|+ ......|.-++.|.|+++++.++++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444433 3344555666665541 1 222 2233334455666666666666665544
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.13 E-value=4.3 Score=21.83 Aligned_cols=20 Identities=45% Similarity=0.459 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHh
Q 007077 463 CLIDLLGRAGLLDEAEELIR 482 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~ 482 (619)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.26 E-value=49 Score=29.37 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChhHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEV-YQIQPKLEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~ 466 (619)
+.+.-++.+.+.+...+++...++-++. +|.. .+-..+++.+|-.|+|++|..-++-...- ....+...+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567788889999999999888877 6654 46667778899999999998877765421 012233556666665
Q ss_pred H
Q 007077 467 L 467 (619)
Q Consensus 467 ~ 467 (619)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.70 E-value=1.1e+02 Score=33.31 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=88.7
Q ss_pred HhCCCHHHHHHHHHhcC----CCC-------hhhHHHHHH-HHHhCCChHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 007077 367 AKCGLIEKALEIFYELR----EKD-------AASWTSIIC-GLAMNGKINKALELFSQMISGG----AKPDDITFIGVLS 430 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~----~~~-------~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~ 430 (619)
....++.+|..++.++. .++ ...|+++-. .....|++++|..+.+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566677766666543 221 123444432 2345677778777777765541 1122334445555
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHH---HHHH--HHHHhcCCHHH--HHHHHhhCC-----CCC-CcccHHHHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY---GCLI--DLLGRAGLLDE--AEELIRKIP-----NEN-NEIIVPLYG 497 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~l~--~~~~~~g~~~~--A~~~~~~~~-----~~~-~~~~~~~~~ 497 (619)
+..-.|++++|..+.+...+. .-.-+...+ ..+. ..+..+|.... .+..|.... ..+ ..+-..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 566677888877776665442 112233222 2221 23445563222 222222211 111 112223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh----ccCCC--Ccch-HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 498 ALLSACRIYGNVDMGEKLAALLE----KIESK--DSSF-HTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~----~~~p~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.++.++.+ ++.+..-..... ...|. +... +..|+.++...|+.++|...+.++...
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44444433 333333333332 22222 2211 236777788888888888887777643
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.47 E-value=30 Score=26.56 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.++|..|.+.+...+. ....+.-.-+..+.+.|++++|+..=.....||...|-+|.. .+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555555442 112222223344667777777744444444567777766544 3667777777777766655
Q ss_pred CCCCCHHHH
Q 007077 417 GAKPDDITF 425 (619)
Q Consensus 417 g~~p~~~~~ 425 (619)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 4 4443333
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.72 E-value=15 Score=32.86 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCHHH-------HHHHHHHHhccC--CC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 493 VPLYGALLSACRIYGNVDM-------GEKLAALLEKIE--SK----DSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
..++.-+.+.|...|+.+. |...|+++.+.. |. ...+...++.+..+.|++++|.+.+.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4456667788888888544 444444444332 22 23556788999999999999999999998643
No 364
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.13 E-value=1.1e+02 Score=32.47 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPC-LLAYNLLIKAFAKKGSFRKSLLLFSKLRERGV 84 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 84 (619)
+.+..+..|++.. +.=+.++-.++++++.. . ...|..++++....|......-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~l---R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLL---RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHH---HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 4566777777777 45566777777776654 3 56788888888888876655555555554433
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.73 E-value=12 Score=33.03 Aligned_cols=67 Identities=15% Similarity=0.035 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+..+..+.+.+.+.+|+...+.-.. ..+.+...-..++..++..|++++|..-++.+-.+.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk-akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK-AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh-cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456677788888888888765542 23333334667778888899999998888888888887654
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.52 E-value=69 Score=29.68 Aligned_cols=252 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHCCCCCCccc-------HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007077 59 LIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT-------YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMD 131 (619)
Q Consensus 59 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 131 (619)
+.+-..+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+......+.-......--..++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HhHhc-----CChhHHHHHHccCCC---------CCeecHHHHHHHHHcCCChhHHH----HHHHHhHhcCCCCCChhhH
Q 007077 132 MYGVL-----GKICNVKKLFDEMPD---------KDVVSWNVSISGHVKCMRFEDAV----DVFRRMRQGCNLMPDEGTV 193 (619)
Q Consensus 132 ~~~~~-----g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~p~~~~~ 193 (619)
.+... ..++.-..+.....+ --...-..+|..+.+.|++.+|+ .++.++++ ..-+|+-.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk-~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK-YDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-hcCccceeeh
Q ss_pred HHHHHH-hhcCCChHHHHHHHHHHHHh-----ccCChhHHHHHHHH--HHhcCChhhHHHHhccCCC---------CCch
Q 007077 194 VSTLSA-CTALKNLELGKEIHRYINQE-----LEFTPIMGNALLDM--YCKCGCLSEARELFDEMPN---------KNVI 256 (619)
Q Consensus 194 ~~ll~~-~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~---------~~~~ 256 (619)
..+=+- |-..++...++.-+..+... +||-...---|+++ .|...++..|...|-+..+ +-.+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~ 247 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACV 247 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHH
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCC------CCChhhHHHHHHHHHHc--CChhHHHHHHHH
Q 007077 257 CWTSMVSGYVNCGQLEKARDLFDRSP------VRDIVLWTAMINGYVQF--NRFDEAVALFRE 311 (619)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 311 (619)
+...|+-.-.-.+..++...+++.-. .+++....++..+|... .++..|+.-|..
T Consensus 248 sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 248 SLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhH
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=7.7 Score=34.60 Aligned_cols=85 Identities=14% Similarity=-0.024 Sum_probs=40.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
|.....++.|+..|.+.+ .+.|+. .-|..=+.++.+..+++.+.+--.+... -++..+...-.+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-cChHHHHHHHHHHHHHHhhcccc
Confidence 444455666666555544 334554 2333444555555555555544443331 12222222333344445555666
Q ss_pred HHHHHHHHHh
Q 007077 511 MGEKLAALLE 520 (619)
Q Consensus 511 ~a~~~~~~~~ 520 (619)
+|+..+.++.
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.82 E-value=13 Score=26.68 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=18.3
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
....++|+..|....++..-.|+ ..++.+++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443111111 2233444444444444444443
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.45 E-value=10 Score=28.28 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=21.9
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++...+.+|+|......++..+...|++++|++.+-.+..
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455566665566666666666666666665555544
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.40 E-value=12 Score=38.02 Aligned_cols=103 Identities=17% Similarity=0.010 Sum_probs=71.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
....|+...|...+..... ..|- ....-.|...+.+.|...+|-.++.+...-. ...+.++..+..++....++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhh
Confidence 3457888888888777653 3343 2233456677777888888888877655221 11222377788888888999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
+.|++.++.+.+++|+++.+-..|..+-+
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999887766665544
No 371
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.08 E-value=1.9e+02 Score=32.83 Aligned_cols=158 Identities=14% Similarity=0.062 Sum_probs=80.4
Q ss_pred ccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH-HHHHHHHHHHcCCCCChh
Q 007077 279 DRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQ-GKWIHGYINENRITVDAV 357 (619)
Q Consensus 279 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~ 357 (619)
..+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +...+..+.+ .++..
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHH
Confidence 34445555444445555555443321 11121 23444445555555555554332 2233333332 34566
Q ss_pred HHHHHHHHHHhCCCHHHHH-HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 358 VATALIEMYAKCGLIEKAL-EIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
+-.+.+.++.+.|..+.+. .+...+.+++...-...+.++...+. +++...+..+.+ .|+...-...+.++.+.+
T Consensus 791 VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 791 VRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccC
Confidence 6667777777777655443 23344445565566666667766655 345555555553 455555555566665543
Q ss_pred cHHHHHHHHHHhHH
Q 007077 437 LVDEGRRFFNTMTE 450 (619)
Q Consensus 437 ~~~~a~~~~~~~~~ 450 (619)
.-..+...+....+
T Consensus 867 ~~~~a~~~L~~al~ 880 (897)
T PRK13800 867 GDPAARDALTTALT 880 (897)
T ss_pred CCHHHHHHHHHHHh
Confidence 33455656655554
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.05 E-value=8 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46777888888888888877777766654
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.61 E-value=11 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC
Q 007077 393 IICGLAMNGKINKALELFSQMISGG 417 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m~~~g 417 (619)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566677777777777777766543
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.47 E-value=92 Score=28.57 Aligned_cols=197 Identities=11% Similarity=0.117 Sum_probs=115.1
Q ss_pred CCChhhHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHHH---cCC--C
Q 007077 283 VRDIVLWTAMINGY-VQFNRFDEAVALFREMQIIRLKPDK---FILVALLTGCAQLGALEQGKWIHGYINE---NRI--T 353 (619)
Q Consensus 283 ~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~ 353 (619)
.||+..-|..-.+- .+..++++|+.-|++..+..-.-.. ..+..++....+.+++++....+.++.. ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 45554433322211 2345889999999988774322223 3455677888899999988888877643 111 2
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhH----HHHHHHHHhCCChHHHHHHHHHHHHCCCCC----
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASW----TSIICGLAMNGKINKALELFSQMISGGAKP---- 420 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---- 420 (619)
-+....|++++......+.+--.++++.-.+ +|...| .-|...|...+.+.+...+++++...--.-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2345667777777766666666555554321 233322 446677777788888777777776542111
Q ss_pred CH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH----HHHhcCCHHHHHH
Q 007077 421 DD-------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID----LLGRAGLLDEAEE 479 (619)
Q Consensus 421 ~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~ 479 (619)
|. ..|..-++.|....+-..-..++++......-.|.+.....+-. +..+.|.+++|-.
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 11 24555556666666666667777766544344455544433322 2346677777653
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.45 E-value=32 Score=28.32 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=19.7
Q ss_pred ccHHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCChhhHHHHHHHh
Q 007077 89 FTYPFVFKAVGWLGE-VKKGEKVHGYVVKTGLEFDTYVCNSIMDMY 133 (619)
Q Consensus 89 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 133 (619)
..|..++.+.+.... --.+..+|..+.+.+.++++.-|..++..+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344455544433332 222344444444444444444444444443
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.35 E-value=99 Score=28.88 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+.+.....|..+|.+.+|.++-++... -++.+...|..|+..+...|+--.+.+-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt-ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT-LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345566788899999999999999883 46666667999999999999977777666555
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.30 E-value=6.4 Score=33.52 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
+++|+.-|++++.++|+...++.+++++|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456666777777888888888888888877654
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.96 E-value=1.9e+02 Score=32.11 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 56 YNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 56 ~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
|..|+..|...|+.++|+++|.+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Confidence 4444444444444444444444443
No 379
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.10 E-value=1.8e+02 Score=31.35 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHHcCChhH
Q 007077 226 MGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPV-RDIVLWTAMINGYVQFNRFDE 304 (619)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 304 (619)
+....++.+.-.|++++|-...-.|...+..-|..-+..+...++......++=..++ -+...|..++..+.. .+.
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~-- 470 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV-- 470 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH--
Confidence 4466777778888888888888888887888888877777777777665555544433 255677777776665 222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 007077 305 AVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE 384 (619)
Q Consensus 305 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 384 (619)
.-|.+..+ ..+...|+.+.-.-+...+ +.+. .-+..+...|+..|...+++++|.+++-.+.+
T Consensus 471 --~~F~e~i~---~Wp~~Lys~l~iisa~~~q----------~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 471 --KGFLELIK---EWPGHLYSVLTIISATEPQ----------IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --HHHHHHHH---hCChhhhhhhHHHhhcchH----------HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 22222222 1222223222211111111 1111 11223334488999999999999999988886
Q ss_pred CC
Q 007077 385 KD 386 (619)
Q Consensus 385 ~~ 386 (619)
++
T Consensus 534 ~~ 535 (846)
T KOG2066|consen 534 KD 535 (846)
T ss_pred hH
Confidence 64
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.05 E-value=93 Score=29.46 Aligned_cols=20 Identities=0% Similarity=-0.090 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccCCCCcchH
Q 007077 511 MGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~ 530 (619)
.|.+...++.+.+|.-|...
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 35566777788888877743
No 381
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.87 E-value=1.2e+02 Score=30.49 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChhhHHHHhccC
Q 007077 229 ALLDMYCKCGCLSEARELFDEM 250 (619)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~ 250 (619)
+.+...+..|+.+-+.-+++.=
T Consensus 204 t~l~~A~~~~~~~iv~~Ll~~g 225 (413)
T PHA02875 204 AALCYAIENNKIDIVRLFIKRG 225 (413)
T ss_pred hHHHHHHHcCCHHHHHHHHHCC
Confidence 3444445566666655555543
No 382
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.74 E-value=1.1e+02 Score=28.69 Aligned_cols=142 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCC-----CcccHHHHHHHHHh-cCChhHHHHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSP-----CLLAYNLLIKAFAK-KGSFRKSLLL 75 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~-~g~~~~a~~~ 75 (619)
+........++..-......-|..|+..-. -+-+|+++|+...+. |...-..+++.... .+.--.|+-=
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~-----~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVKRNK-----IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHhhH-----HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Q ss_pred HHHhHHCC--CCCCcccHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCChhhHHHHHHHhHhcCChhHHHHHHcc
Q 007077 76 FSKLRERG--VSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKT-GLEFDTYVCNSIMDMYGVLGKICNVKKLFDE 148 (619)
Q Consensus 76 ~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 148 (619)
+-...... ..++..+...+++.++..+++.+-.++++..... +...|...|...|......|+..-..++.++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 383
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.35 E-value=18 Score=30.95 Aligned_cols=47 Identities=4% Similarity=0.142 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
.+++|...|+++...+|++......| .+. .+|-++..++.+.+....
T Consensus 95 ~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhhhh
Confidence 36788888889999999999843333 332 346667777766554433
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.32 E-value=21 Score=26.88 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=35.8
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC---------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKD---------SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+.|++..|.+.+.+..+..... ..+...++.+....|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777877776666664332211 12345677788889999999999988864
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.24 E-value=86 Score=27.01 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=15.3
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.|.+.|.+++|.+++++..+ +|++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 45666666666666666655 555444
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.06 E-value=33 Score=25.25 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHH
Q 007077 107 GEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDA 173 (619)
Q Consensus 107 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 173 (619)
+.++++.+.+.|+ .+......+-..-...|+.+.|.++++.++ +.+..|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455666666554 222223333222224567777777777777 6666777777777666654443
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.72 E-value=51 Score=26.26 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
+..+-+..+....+.|++......+++|.+.+++..|.++|+.++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44555666667788999999999999999999999999999988764 334333455544
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.23 E-value=2.2e+02 Score=31.31 Aligned_cols=217 Identities=15% Similarity=0.026 Sum_probs=106.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhCCCHHHHHHHHHhcCC--------CChhhHHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAV-------VATALI-EMYAKCGLIEKALEIFYELRE--------KDAASWTSIICG 396 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~ 396 (619)
...++.+|..+..++...-..|+.. .+++|- ......|++++|.++-+.... ..++.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4455666666666554432222111 122221 123346777877777665442 245667777778
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHhccCcHHH--HHHHHHHhHHhcCCC-----CChhHHHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDI---TFIGV--LSACSHGGLVDE--GRRFFNTMTEVYQIQ-----PKLEHYGCL 464 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l--l~~~~~~g~~~~--a~~~~~~~~~~~~~~-----p~~~~~~~l 464 (619)
..-.|++++|..+.++..+.--.-+.. .+..+ ...+...|.... ....|......+... +-...+..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888888888888777655431122222 22222 223455663322 222333322221111 112344444
Q ss_pred HHHHHhcCCHHHHHHHHhhCC----C-CCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHHH---
Q 007077 465 IDLLGRAGLLDEAEELIRKIP----N-ENNEIIVP-LYGALLSACRIYGNVDMGEKLAALLEKIESKD--SSFHTLL--- 533 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l--- 533 (619)
..++.+ ++.+..-..... . .+.+.... .+..|+......|+++.|....+.+..+.-.. ...|.+.
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555554 333332222211 1 11111111 12256677788899999999888886543222 2222222
Q ss_pred HH--HHHhCCChHHHHHHHHH
Q 007077 534 AN--IYASANRWEDVTNVRQK 552 (619)
Q Consensus 534 ~~--~~~~~g~~~~A~~~~~~ 552 (619)
+. .....|+.++|...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23456888888777766
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.12 E-value=24 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHhccCC
Q 007077 496 YGALLSACRIYGNVDMGEKL--AALLEKIES 524 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p 524 (619)
|-.+.-.+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555556666666666666 335544444
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.65 E-value=44 Score=26.90 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=32.2
Q ss_pred HHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 511 MGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 511 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
.+..+|+.+. +++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777774 45666777788888888888888888888875
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.10 E-value=99 Score=28.70 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---
Q 007077 293 INGYVQFNRFDEAVALFREMQII--RLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA--- 367 (619)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 367 (619)
|.+++..|+|.+++...-+--+. .++|.. .-.-|-.|.+.+.+..+.++-.......-..+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56677777777776665443221 133332 22223335566666666655555554332333333555444443
Q ss_pred --hCCCHHHHHHHH
Q 007077 368 --KCGLIEKALEIF 379 (619)
Q Consensus 368 --~~g~~~~A~~~~ 379 (619)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 234555554443
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.09 E-value=5.8 Score=39.23 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=72.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL-IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
+......+.++.|..++.++++ +.|+...|... ..++.+.+++..|+.=+.++++. ++.....|--=..+|...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc-CchhhheeeeccHHHHhHH
Confidence 4556677889999999999884 46875544433 37788899999998887777733 3444334444456778888
Q ss_pred CHHHHHHHHHHHhccCCCCcchH
Q 007077 508 NVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.+.+|...++....+.|+++.+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHH
Confidence 89999999999999999998743
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.88 E-value=63 Score=29.93 Aligned_cols=87 Identities=20% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG---- 469 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 469 (619)
|.+++..+++.+++...-+--+..-+-.....-.-|-.|.+.|....+.++-...... .-+-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 5667777777776665544333211222233334444566777777766666665543 11122333666665554
Q ss_pred -hcCCHHHHHHHH
Q 007077 470 -RAGLLDEAEELI 481 (619)
Q Consensus 470 -~~g~~~~A~~~~ 481 (619)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357777777776
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.29 E-value=82 Score=26.03 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=56.7
Q ss_pred hHHHHHHHhHhcCChhHHHHHHccCC---------CCCeecHHHHHHHHHcCCC-hhHHHHHHHHhHhcCCCCCChhhHH
Q 007077 125 VCNSIMDMYGVLGKICNVKKLFDEMP---------DKDVVSWNVSISGHVKCMR-FEDAVDVFRRMRQGCNLMPDEGTVV 194 (619)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~ 194 (619)
..|.++......+++.....+++.+. ..+..+|..++.+..+... --.+..+|.-|++ .+.++++..|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHH
Confidence 34556655555566665555555543 1356688889988876666 4456788888887 78889999999
Q ss_pred HHHHHhhcCCChH
Q 007077 195 STLSACTALKNLE 207 (619)
Q Consensus 195 ~ll~~~~~~~~~~ 207 (619)
.++.+|.+....+
T Consensus 120 ~li~~~l~g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHcCCCCc
Confidence 9999887764443
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.74 E-value=63 Score=23.86 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 007077 341 KWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. +.+..|...+.++...|+.+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 345555555552 222222222222234577777777777777 77777777777777777665554
No 396
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.72 E-value=82 Score=31.74 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHhcCChhhHHHHhccCCCCCch---hHHHHHHHHHhcCCHHHHHHHHccCCCCCh
Q 007077 234 YCKCGCLSEARELFDEMPNKNVI---CWTSMVSGYVNCGQLEKARDLFDRSPVRDI 286 (619)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 286 (619)
.+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+-+.-+++....++.
T Consensus 175 A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 175 AMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230 (413)
T ss_pred HHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence 34456666665555544433222 123455555677888888888887766553
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.61 E-value=1.5e+02 Score=27.96 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC---------------ChHHHHHHHHHHHhCCC
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIYASAN---------------RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 558 (619)
+.++|...|+++.+... ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 56666666666665555 33334444 444443 56666666666655443
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.46 E-value=1.5e+02 Score=27.67 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCC
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNR 301 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 301 (619)
.++.....+...|.+.|++.+|+..|-.-.+++...+..++..+...|...++ |... .-.+--|...++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dlfi-~RaVL~yL~l~n 156 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DLFI-ARAVLQYLCLGN 156 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HHHH-HHHHHHHHHTTB
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hHHH-HHHHHHHHHhcC
Confidence 45667777888888888888888766554433333332333333333332222 1111 122233555666
Q ss_pred hhHHHHHHHHHHH
Q 007077 302 FDEAVALFREMQI 314 (619)
Q Consensus 302 ~~~A~~~~~~m~~ 314 (619)
...|...+....+
T Consensus 157 ~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 157 LRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665544
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.37 E-value=29 Score=27.84 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
+|+--..+|-.++..| +....+|..+. ++....+..|...+..+...|++.+|.++++
T Consensus 64 nD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 64 NDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444555555443 23455666664 4555666778888888888899988888876
No 400
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.05 E-value=3e+02 Score=31.24 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=113.6
Q ss_pred ccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007077 248 DEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVAL 327 (619)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 327 (619)
..+.++|..+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|...-...
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 33334555555555555555554433333333344444433334444443332211112223333321 444444444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHH-H
Q 007077 328 LTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINK-A 406 (619)
Q Consensus 328 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A 406 (619)
+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+ .+...+.+++...-...+.++...+..+. +
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchh
Confidence 44444332111 111111 111 345555555555555554432 23333445566666666666666655432 3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
...+..+.. .+|...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+..+..
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~ 848 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALT 848 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhc
Confidence 344444443 34555566666666666665444333333333 2454455556666666665 345555555553
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
.++.. .-...+.++.+.+....+...+..+.+
T Consensus 849 D~~~~---VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLD---VRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHH---HHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 33222 244444455443323445555554443
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.94 E-value=13 Score=29.87 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=23.3
Q ss_pred hcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 007077 65 KKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV 98 (619)
Q Consensus 65 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (619)
..|.-..|..+|..|+++|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34555668888889988888887 477777654
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.89 E-value=54 Score=26.10 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=41.6
Q ss_pred HHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 173 AVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 173 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
..+-++.+.. ..+.|++......+++|.+.+++..|..+++-+....++...+|-.++
T Consensus 68 vrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3444555555 678888888888888888888888888888887776555444554443
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.80 E-value=4.3e+02 Score=32.94 Aligned_cols=114 Identities=17% Similarity=0.103 Sum_probs=55.3
Q ss_pred HHHhccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHHhHhcCChhHHHHHHcc-CCCCCeecHHHHHHHHHcCCChhH
Q 007077 96 KAVGWLGEVKKGEKVHGYVVKTGL--EFDTYVCNSIMDMYGVLGKICNVKKLFDE-MPDKDVVSWNVSISGHVKCMRFED 172 (619)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 172 (619)
.+-.+.+.+..|...++.-..... ......+-.+...|+..++.|....+... ..+|+ ...-|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHH
Confidence 344455566666666655210000 01122334444466666666665555542 22221 2233444555677777
Q ss_pred HHHHHHHhHhcCCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHH
Q 007077 173 AVDVFRRMRQGCNLMPD-EGTVVSTLSACTALKNLELGKEIHRY 215 (619)
Q Consensus 173 A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (619)
|...|+.+.+ ..|+ ..+++.++...-..+.++...-..+-
T Consensus 1468 a~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1468 AAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred HHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 7777777743 3344 44555555554455555544443333
No 404
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=59.43 E-value=1.8e+02 Score=28.47 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=117.0
Q ss_pred cCcHHHHHHHHHHHHH-----cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 007077 334 LGALEQGKWIHGYINE-----NRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 334 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
.++.+.|.+-+-...+ .+...+..+...++..|...++|+.--+... ...-+.|+...|+.
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHH
Confidence 5566666554433322 2333445556666677777666654333221 12235666666655
Q ss_pred HH--HHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 409 LF--SQMISGGAKPDDITFIGVLSACSH--GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 409 ~~--~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.. +-|.-..-.||..|-..++..+.. .|. +|-+.. ....-..|...+-.+|+.++|.+++.+.
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vtegk------IyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLRTVTEGK------IYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHhhcCc------eEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 32 223222335666665555554421 111 110000 0122334667788999999999999887
Q ss_pred CCCCCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhccCCCCc-------chHHHHHHHHHhCCChHH
Q 007077 485 PNENNEIIVPLYGAL------------LSACRIYGNVDMGEKLAALLEKIESKDS-------SFHTLLANIYASANRWED 545 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~ 545 (619)
+.+ ||.++ +..|...+|+-.|--+-+++....-+.+ .+|..++......+.+=+
T Consensus 158 ~VE-------Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~ 230 (439)
T KOG1498|consen 158 QVE-------TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLN 230 (439)
T ss_pred chh-------hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhh
Confidence 632 23332 4578888999999888888754332222 347888888889999999
Q ss_pred HHHHHHHHHhCCCcccCceeEEEE
Q 007077 546 VTNVRQKMKEMGVRKVPGCSSIEI 569 (619)
Q Consensus 546 A~~~~~~m~~~~~~~~~~~~~~~~ 569 (619)
+.+.++...+.|.-+....-|+..
T Consensus 231 v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 231 VCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHhcccccccChhhhhhh
Confidence 999999998766544422224443
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.04 E-value=1.5e+02 Score=27.50 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS 433 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 433 (619)
.++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46777788888899999999888877544333332222222222222222221 222222233 344
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 007077 434 HGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~ 451 (619)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 557788888877776654
No 406
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=58.06 E-value=8.4 Score=30.47 Aligned_cols=28 Identities=46% Similarity=0.797 Sum_probs=22.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCCchHHHHHHHH
Q 007077 563 GCSSIEINGIIHEFLVGDPSHSEMKEIYSMLD 594 (619)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 594 (619)
||+|++. +.|++++.+||+...+...+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHH
Confidence 6888876 999999999999866665444
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.04 E-value=43 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHh
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIR 482 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (619)
|+...|..++..+...|+.++|.+..+
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~ 168 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLA 168 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333344444444444444444433333
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.91 E-value=35 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
.+.......|++++|...++++.++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455666778888877777776554
No 409
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=56.96 E-value=1.7e+02 Score=27.23 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCCh-----hHHHHHHHHHHHhCCCCChhhHHH
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEV-----KKGEKVHGYVVKTGLEFDTYVCNS 128 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~ 128 (619)
...+.+|+.+.+.+....|+.+.+.+... +-=..+...++......... ......+....+.- .....|-.
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll--~~f~~~l~ 158 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL--QEFPEYLE 158 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH--HcCcchHH
Confidence 34578899999999999999998887643 22222333333322211111 11122222222210 00123445
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCC-----ChhhHHHHHHHhhcC
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMP-----DEGTVVSTLSACTAL 203 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~ 203 (619)
++..|.|.=+...=..+|+....| ..|..-|.+.|+.+.|-.++--+....+... +......++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 555566665666666677766433 3677777888888888877776654222222 233444555666666
Q ss_pred CChHHHHHHHHHHHH
Q 007077 204 KNLELGKEIHRYINQ 218 (619)
Q Consensus 204 ~~~~~a~~~~~~~~~ 218 (619)
++++.+.++.+.+..
T Consensus 234 ~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 234 GDWDLCFELVRFLKA 248 (258)
T ss_pred ccHHHHHHHHHHHHH
Confidence 777777766665544
No 410
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.88 E-value=2.2e+02 Score=28.69 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHH
Q 007077 318 KPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYEL---REKDAASWTSII 394 (619)
Q Consensus 318 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~ 394 (619)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444432 67888887777766543211121 1122222211 122223344555
Q ss_pred HHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 395 CGLAM---NGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 395 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
+++.+ .++++.|+..+.+|++.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 5789999999999999998887665555544544333
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.54 E-value=1.2e+02 Score=31.76 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=63.9
Q ss_pred HhcCCHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 469 GRAGLLDEAEELIRKIP-----NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
.+..++..+.+.|..-. ..-+.........+.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 35567777777775432 1111222344666677778888999999999999999999888778888888888999
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
++|+..+.....
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999988877764
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.35 E-value=40 Score=24.30 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=32.6
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHH
Q 007077 399 MNGKINKALELFSQMISGGAKPD-D-ITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
...+.++|+..++..++.-..|. . .++..++.+++..|.+.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888777633332 2 36777788888888888776653
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.12 E-value=1.9e+02 Score=28.80 Aligned_cols=51 Identities=4% Similarity=0.034 Sum_probs=27.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHhHH
Q 007077 399 MNGKINKALELFSQMISGGAKPDDI--TFIGVLSAC--SHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~--~~~g~~~~a~~~~~~~~~ 450 (619)
..+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666677777666665 344333 233333333 234556666666666544
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.78 E-value=50 Score=33.89 Aligned_cols=134 Identities=16% Similarity=0.043 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhhCCC-CCCcccHH
Q 007077 419 KPDDITFIGVLSACSHG--GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG-RAGLLDEAEELIRKIPN-ENNEIIVP 494 (619)
Q Consensus 419 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~ 494 (619)
-|+..+..+++.-...- ...+-+-.++..|.. .+.|--...| +...|- -.|+...|...+..... .|.... .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQD-V 643 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhc-c
Confidence 45655555554433221 223344445444432 3333322222 233444 46899999988876652 222111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..-.|.....+.|-...|-.++.+...+.-..|-++..++++|....+.+.|++.++...+.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 14456666778888889999999999998888888999999999999999999999987653
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.02 E-value=20 Score=31.94 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
+.|+.+.|.+++++... ..+.....|--+...-.+.|+++.|.+.+++..+++|++
T Consensus 7 ~~~D~~aaaely~qal~-lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALE-LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhh-cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34444444444444441 122222224444444444555555555555554444443
No 416
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.91 E-value=25 Score=31.33 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
..+.|+.+.+.+++.++.++-|+....|..++..-.++|+++.|.+.+++..+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 457789999999999999999999999999999999999999999999999876544
No 417
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.87 E-value=1e+02 Score=24.42 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------hccCCCCcchHH----HHHHHHHhCCChHHHHHHHHHHH
Q 007077 496 YGALLSACRIYGNVDMGEKLAALL-------EKIESKDSSFHT----LLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+..|..++...|++++++...+++ -++..+....|. .-+.++...|+.++|...|+..-
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 445556666777776665554444 355555555453 33456778899999998887653
No 418
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.69 E-value=1.3e+02 Score=27.25 Aligned_cols=81 Identities=7% Similarity=-0.061 Sum_probs=43.5
Q ss_pred HHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 007077 366 YAKCGLIEKALEIFYELR--EKDA-ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 441 (619)
|....+++.|...|.+.. .|.+ .-|+.-+-++.+..+++.+.+--.+.++. .||.+ ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 444455666666665544 2333 33445555666666666666655555554 55554 223333444555566666
Q ss_pred HHHHHHh
Q 007077 442 RRFFNTM 448 (619)
Q Consensus 442 ~~~~~~~ 448 (619)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=54.66 E-value=2.5e+02 Score=28.62 Aligned_cols=67 Identities=7% Similarity=0.017 Sum_probs=46.2
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccC-ChhHHHHHHHHHHHhC
Q 007077 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTG 118 (619)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g 118 (619)
.|+..|..-+..+-+.+.+.+.-.+|.+|... .|.++..|.....-....+ +++.|+.+|..-++..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 47888888887777777788888899888875 2334555554444433333 3788888887777644
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.40 E-value=3.1e+02 Score=29.57 Aligned_cols=182 Identities=18% Similarity=0.290 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCC
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF----------ILVALLTGCAQLGALEQGKWIHGYINENR--ITVD 355 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 355 (619)
+-..++-.|....+++..+++.+.++.. ||.. .|.-.++---+-|+-++|..+.-.+.+.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4445666677777888888888777652 3321 23333333334566677766655554432 2233
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT---FIGVLSAC 432 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~ 432 (619)
+||-+|++ |+.|- +-+.|...+..+.|.+.|++.-+. .|+..+ +..++.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHh
Confidence 24444542 22211 112344445566777777776654 666542 33333322
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
.+ .++...++-. + | ..|-..++|.|.+++-.++++- ...+.+-.-.+++.+|
T Consensus 334 G~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV-------------~~y~~asVLAnd~~ka 385 (1226)
T KOG4279|consen 334 GE--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDV-------------ATYFEASVLANDYQKA 385 (1226)
T ss_pred hh--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhH-------------HHhhhhhhhccCHHHH
Confidence 11 1222221110 0 1 1123345566666665555532 1223333345666777
Q ss_pred HHHHHHHhccCCCC
Q 007077 513 EKLAALLEKIESKD 526 (619)
Q Consensus 513 ~~~~~~~~~~~p~~ 526 (619)
.+..+++.++.|+.
T Consensus 386 iqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 386 IQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhccCCce
Confidence 77777777776654
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.10 E-value=1e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888776
No 422
>PRK10941 hypothetical protein; Provisional
Probab=52.27 E-value=58 Score=30.36 Aligned_cols=67 Identities=6% Similarity=-0.143 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.+.+-.+|.+.++++.|+.+.+.+. ..|+.|. -+.--.-.|.+.|.+..|..-++...+..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445667778888888888887766 2233332 25555666888888888888888888888888763
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.11 E-value=85 Score=31.20 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELRE-----------KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
.-.|++.++-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888999999888876641 145667778888889999999999888754
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.06 E-value=80 Score=24.57 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=21.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 55 AYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 55 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 425
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=51.82 E-value=98 Score=24.14 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
.+.+.+.+...+.|..+.....+++-+...-.++++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356777888888888877666777665555556665554443
No 426
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.97 E-value=29 Score=32.27 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=44.1
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
..+.|+.++|..+|+.... -.+..+.+..-+......+.++-+|.++|-++..+.|.+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla-laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA-LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHh-cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4578899999999987662 1333333455555556667788888889999999999887743
No 427
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.61 E-value=1.6e+02 Score=29.71 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHhCCCHHHHHHHHHhcCC---C---------ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-------CCCCCCH---
Q 007077 365 MYAKCGLIEKALEIFYELRE---K---------DAASWTSIICGLAMNGKINKALELFSQMIS-------GGAKPDD--- 422 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~--- 422 (619)
.+.-.|++.+|.+++...-- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556777777777765431 1 223456666666677777766666666553 4555532
Q ss_pred --------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 423 --------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 423 --------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
.+|+. .-.+.+.|+.-.|.+.|......+ ..++..|-.|.++|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 22332 234667888999999988887744 556678888888775
No 428
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.32 E-value=1.2e+02 Score=23.53 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 007077 264 GYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR 316 (619)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 316 (619)
.+...|++++|...=.....||...|-+|- -.+.|-.+++...+.++..+|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555555553333344455665554443 345666666666666665544
No 429
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.15 E-value=37 Score=24.97 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=27.2
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChh
Q 007077 253 KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFD 303 (619)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 303 (619)
.++.+....-.......+.+++..+++.++.++..+|..+..++...|...
T Consensus 28 ~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 28 RGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 333333333333334445566666666666666666666666665555443
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.95 E-value=1.1e+02 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCccc
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEII 492 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 492 (619)
.+-.|.+.|.+++|.+++++....++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~ 145 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQK 145 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchh
Confidence 34567788888888888888775444443
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.20 E-value=48 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=8.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHh
Q 007077 427 GVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
.++.++...|++++|.++.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444433
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.97 E-value=2.6e+02 Score=26.33 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------CcHH
Q 007077 372 IEKALEIFYELREK-DAASWTSIICGLAM----NGKINKALELFSQMISGGAKPDDITFIGVLSACSHG-------GLVD 439 (619)
Q Consensus 372 ~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------g~~~ 439 (619)
..+|...|....+. ++.....|...|.. ..+..+|...|++..+.|..+...+...+...+... -+..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 45555555544433 33334444444443 336777888888877777554322233333333222 1233
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCC
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENN 489 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 489 (619)
.|...+..+... + +......+...|.. ..+.++|...|.+....++
T Consensus 173 ~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 677777776654 2 33444455555533 3477888888888776655
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.66 E-value=3.4e+02 Score=27.49 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=58.3
Q ss_pred HHHHhcCChhHHHH-HHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 61 KAFAKKGSFRKSLL-LFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 61 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
.--...|+...|-+ ++.-++...-.|+.....+. .....|+++.+.+.+....+. +.....+...++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344566665544 33444333223333322222 234567777776666554331 223445666677777777777
Q ss_pred hHHHHHHccCCC-----CCeecHHHHHHHHHcCCChhHHHHHHHHhHh
Q 007077 140 CNVKKLFDEMPD-----KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQ 182 (619)
Q Consensus 140 ~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 182 (619)
+.|..+-..|.. |.+.+. .....-.-|-++++.-.++++..
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~i--aa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTV--AAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccCChhheee--ecccHHHHhHHHHHHHHHHHHhc
Confidence 777766655542 222211 11111223556677777766644
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.55 E-value=2.1e+02 Score=25.01 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=42.9
Q ss_pred HHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccC-
Q 007077 145 LFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEF- 222 (619)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~- 222 (619)
+.++..++..+.|..+..+-++.-+.+++-+.|-- ..-.+++-.|-+..++.+++++++.+.+. +..
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG-----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG-----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333344445555555555554444443322210 11123344455555666666666655443 111
Q ss_pred -------------ChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 223 -------------TPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 223 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
--.+.|.....+.+.|.+|.|..+++
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 11233445555555555555555554
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.54 E-value=76 Score=29.26 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=8.7
Q ss_pred HHHhccCcHHHHHHHHHHh
Q 007077 430 SACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~ 448 (619)
..|.+.|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.33 E-value=99 Score=23.41 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=32.1
Q ss_pred HHHHhhCCCC--CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 478 EELIRKIPNE--NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 478 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.+.++++... +.+|- ....|.-.|.+.|+.+.+.+-|+.-..+.|.+....
T Consensus 57 e~~~ek~~ak~~~vpPG--~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 57 EKYLEKIGAKNGAVPPG--YHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHhhcCCCCCCc--HHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 3445555433 23333 234444557788888888888888888888877643
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.81 E-value=1.9e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC
Q 007077 109 KVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP 150 (619)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (619)
++++.+.+.++.|.-+.+.-+.-.+...=.+.+...+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444455555554443
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.03 E-value=11 Score=30.25 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
-+.|.-.+|-.+|++|...|.+|+. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446666778888888877777775 88887654
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.72 E-value=41 Score=33.58 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDDITFI-GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRA 471 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 471 (619)
+..+...+.++.|+.++.+.++. .||...|. .-..++.+.+++..|..=+..+++. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 45567788999999999999988 88766543 3347888899999888777776653 354 23333333444555
Q ss_pred CCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHH
Q 007077 472 GLLDEAEELIRKIP-NENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 472 g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 505 (619)
+.+.+|...|+... ..|+.+. ..-.+.-|..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~---~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPD---ATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHH---HHHHHHHHHH
Confidence 67778888777665 3455555 6666655543
No 440
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.42 E-value=1.4e+02 Score=22.32 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLANIYASANR 542 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 542 (619)
.-.+...+...|++++|.+.+-.+...+|+ +..+-..|+.++.-.|.
T Consensus 25 r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 25 RYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344444455555555555554444444433 23334444444444444
No 441
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.37 E-value=48 Score=31.06 Aligned_cols=82 Identities=6% Similarity=0.013 Sum_probs=53.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGA-LLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.+.-|+..|...+.-..+.|.+.+.-.++.+... ..|.++..|-. -.--+...++++.++.++.+...++|++|.+|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~-khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT-KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3445566666666655566677777777766652 23334333433 222356688999999999999999999998876
Q ss_pred HHHH
Q 007077 532 LLAN 535 (619)
Q Consensus 532 ~l~~ 535 (619)
....
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5443
No 442
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.01 E-value=2.6e+02 Score=25.37 Aligned_cols=105 Identities=24% Similarity=0.245 Sum_probs=47.4
Q ss_pred hHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 389 SWTSIICGLA--MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
.|...+.|+- .++++++|++.+-.- .+.|+.. ..++.++...|+.+.|..+++... ....+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3444555543 345555565555211 1112211 134555555666666666665542 11111222222222
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
. ..+|.+.||..+.+........ ..+..++..|..
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~---~l~e~l~~~~~~ 184 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRR---RLFEQLLEHCLE 184 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhH---HHHHHHHHHHHH
Confidence 3 4556666666666665532112 225555555543
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.93 E-value=86 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=16.0
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 007077 186 LMPDEGTVVSTLSACTALKNLELGKEIHRYINQE 219 (619)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (619)
..|++..+...+.++...|+.++|.++...+...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444443
No 444
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.86 E-value=3.7e+02 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC
Q 007077 360 TALIEMYAKCGLIEKALEIFYELR 383 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~ 383 (619)
...+.++.+.|+...+.-+.+.|.
T Consensus 256 ~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 256 REALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHHcCCcchHHHHHHHhc
Confidence 344444555555444444444443
No 445
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.41 E-value=3.2e+02 Score=26.30 Aligned_cols=121 Identities=8% Similarity=0.082 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHH
Q 007077 403 INKALELFSQMISGGAKPDDITFIGVLSACS------HGGLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 475 (619)
.+++..++++....+ .|........+.+|- ..-+|.....+|+.+.. +.|++ .+.|.-+- ..+.--.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVA-la~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVA-LAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHH-HHHhhhHH
Confidence 577888888887776 488888777776662 23467777788887764 35663 34444333 33333456
Q ss_pred HHHHHHhhCCCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 476 EAEELIRKIPNENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 476 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++.+++-+...|. ......+..-...+.+.|..++|...|+++..+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 67777776664422 112222555667789999999999999999998887655
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.15 E-value=53 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 325 (619)
-|+..|....+.||.++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46788888999999999999999999888765444443
No 447
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=42.10 E-value=3.1e+02 Score=26.10 Aligned_cols=149 Identities=11% Similarity=0.152 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----CcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCH
Q 007077 403 INKALELFSQMISGGAKPDDITFIGVLSACSH--G----GLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 474 (619)
+++.+.+++.|.+.|++-+..+|.+....... . ....++..+|+.|++.|.+--. -..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788889999988888777664433322 2 2355788999999987654332 3333333322 44443
Q ss_pred H----HHHHHHhhCCCCCC--cccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCChH
Q 007077 475 D----EAEELIRKIPNENN--EIIVPLYGALLSACRIYGN--VDMGEKLAALLEKIESK--DSSFHTLLANIYASANRWE 544 (619)
Q Consensus 475 ~----~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 544 (619)
+ ++..+++.+...+- ..+......++..+..... ..++..+++.+.+.+-. ..+ |..++-+-.-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~-yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH-YPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc-ccHHHHHHhcCCchH
Confidence 3 34445554442221 1121122333322221111 34556666666544432 332 444443322333332
Q ss_pred HHHHHHHHHH
Q 007077 545 DVTNVRQKMK 554 (619)
Q Consensus 545 ~A~~~~~~m~ 554 (619)
+...-+.++.
T Consensus 235 ~~~~~i~ev~ 244 (297)
T PF13170_consen 235 KIVEEIKEVI 244 (297)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 448
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.54 E-value=4.3e+02 Score=27.48 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhH---HHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELREK--DAASW---TSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
..++.-|.+.+++++|..++..|.-. ....| +.+.+.+.+..--++....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999988733 22223 3334444444444444455555544
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.88 E-value=57 Score=30.60 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGV 428 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 428 (619)
-|+..|....+.|++++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4668888888999999999999999988876555565443
No 450
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.68 E-value=3.8e+02 Score=26.59 Aligned_cols=22 Identities=5% Similarity=-0.250 Sum_probs=11.9
Q ss_pred HHHhCCChHHHHHHHHHHHHCC
Q 007077 396 GLAMNGKINKALELFSQMISGG 417 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g 417 (619)
.+...+++..|.++|+++....
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcc
Confidence 3445555555555555555553
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.05 E-value=3.9e+02 Score=26.55 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhccCCC------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC-----------Chh
Q 007077 225 IMGNALLDMYCKCGCLSEARELFDEMPN------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR-----------DIV 287 (619)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~ 287 (619)
..+.-+.+.|..+|+++.|++.|.+..+ ..+..|-.+|..-.-.|+|........+.... ...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLK------PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
....-.-+....+++..|...|-.....-.. |...+....+.+++.-++-+--..+.....-..+-.-......
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---------ChhhHHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---------DAASWTSIIC 395 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~ 395 (619)
++..|.. +++...+++++++... ++.+.-.+|.
T Consensus 311 il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 311 ILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.84 E-value=6.4e+02 Score=29.04 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=57.0
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC-------------------------C-------hhhHHHHHHHHHhCCChHHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK-------------------------D-------AASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~-------------------------~-------~~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
+..+|..+|...+|++.|.+.... + ..-|...+..+-+.+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344577788888888887766521 0 11244455666666666666666
Q ss_pred HHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHH
Q 007077 410 FSQMISGGAKPDD----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL----EHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 410 ~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 475 (619)
-...++. +.++. .+++.+..-....|.+-+|...+ .. .||. .....++-.+..+|.++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~----npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR----NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc----CCcHHHHHHHHHHHHHHHHhccchH
Confidence 6666554 12221 24455555555556665554432 22 2442 23445555666666544
No 453
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.64 E-value=2.5e+02 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=14.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
.-+.-|...|+++.+...|.+...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344555566666666666666554
No 454
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=39.63 E-value=3.1e+02 Score=27.31 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=54.0
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH--------HHhcCCHHHHHHHHhhCCC
Q 007077 415 SGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL--------LGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 415 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~ 486 (619)
...+.||..+.+.+...++..-..+-...+|+-..+ .-.|-...+..++-. -.+...-++++++++.|+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q--qaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ--QADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 345788888877777766666667777777777665 334544444433321 2355667888999988884
Q ss_pred CCCcccHHHHHHHHHHHH
Q 007077 487 ENNEIIVPLYGALLSACR 504 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~ 504 (619)
.-...+++-+-+|..-|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 433333333777766553
No 455
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.41 E-value=51 Score=22.49 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
---.+|.+|.+.|++++|.+..+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334567777788888888777777654
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.33 E-value=67 Score=31.88 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNEN-------NEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
-.|++..+-.|++..|+++++.+.... .+-.+.++-.+.-+|...+++..|.+.|..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888887776654211 1111223444444555555555555555544
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.99 E-value=2.7e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
....+.++..+...|+++.|-+.|.-++..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 344556666677777777777777776654
No 458
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.96 E-value=1e+02 Score=19.64 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=22.4
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 398 AMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777766666665553
No 459
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.83 E-value=6.5e+02 Score=28.78 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCC--CHHHHHHHHHhcCCC
Q 007077 357 VVATALIEMYAKCG--LIEKALEIFYELREK 385 (619)
Q Consensus 357 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 385 (619)
.....++.+|.+.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33456777777777 777777777777654
No 460
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.78 E-value=5.3e+02 Score=27.75 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=42.1
Q ss_pred hHHHHHHHHhccCCCCChhHHHHhhccCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhHHC
Q 007077 21 ETLNKLMVFCTHPSHGNLLYAEKIFGSIQSP--CLLAYNLLIKAFAKKGSFRKSLLLFSKLRER 82 (619)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 82 (619)
..+..|+... +.=+.++-.+++.++... ....++.+++++...|-.....-+.+.+...
T Consensus 347 ~~f~~Lv~~l---r~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~ 407 (618)
T PF01347_consen 347 SKFSRLVRLL---RTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSK 407 (618)
T ss_dssp HHHHHHHHHH---TTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---hcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 4578888877 566888888999888755 6778999999999999766655555555443
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.58 E-value=4.1e+02 Score=26.18 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=64.2
Q ss_pred ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHH-HHHHhc-CCHHHHHHHHccCCCCChhhHHHH---HH
Q 007077 220 LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMV-SGYVNC-GQLEKARDLFDRSPVRDIVLWTAM---IN 294 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~l---i~ 294 (619)
.|-.+.+.-.+...+...|+.+.|.+++++..- ++.... ..+... .+......-++-....|-..|-++ |.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 455566666677777778887777776655321 000000 000000 000000000000011244444443 45
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCA-QLGALEQGKWIHGYIN 348 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 348 (619)
.+.+.|.+..|+++.+-+...+..-|.......|+.++ +.++++--.++.+...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 67778888888888888877655446666666666664 5566666666655543
No 462
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=4.7e+02 Score=26.74 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=43.8
Q ss_pred HcCChhHHHHHHHHHHHcCC-CCC--HH-----HHHHHH-HHHHccCcHHHHHHHHHHHHHcCCCCChhHH--HHHHHHH
Q 007077 298 QFNRFDEAVALFREMQIIRL-KPD--KF-----ILVALL-TGCAQLGALEQGKWIHGYINENRITVDAVVA--TALIEMY 366 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~g~-~p~--~~-----~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 366 (619)
-.|++.+|++-..+|.+.-. .|. .. ....++ .-|+..+.++.|+.-|....+.--..+...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 36777777777777765321 122 11 111122 2233455666666666555443322232221 2344456
Q ss_pred HhCCCHHHHHHHHHhcCCCC
Q 007077 367 AKCGLIEKALEIFYELREKD 386 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~ 386 (619)
.+.|+.+.-.++++.+..++
T Consensus 415 L~~~~~ed~y~~ld~i~p~n 434 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLN 434 (629)
T ss_pred HHhccHHHHHHHHHhcCCCC
Confidence 66666666666666655443
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.27 E-value=57 Score=30.51 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=37.3
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
.+.|+.++|..+|+.... +.|+ +.....+........++-+|-+++-+..
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 578999999999998874 3455 5555556666666678888888887776
No 464
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.15 E-value=4.4e+02 Score=26.03 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=25.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHh
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC-SHGGLVDEGRRFFNTM 448 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~ 448 (619)
..+.+.|-+..|+++.+-+......-|.......|+.| .++++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44455555555555555555543222333333344433 2444554444444443
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.39 E-value=4.1e+02 Score=25.46 Aligned_cols=83 Identities=19% Similarity=0.060 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQI---QPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
-.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.......+ ..-..++.+.....+.+...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~---~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSP---EEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTH---HHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCH---HHHHHHHHhhhccCCHHHHH
Confidence 356777888887763111 334556666677777888876666666655543332 23677788877888888888
Q ss_pred HHHHHHhcc
Q 007077 514 KLAALLEKI 522 (619)
Q Consensus 514 ~~~~~~~~~ 522 (619)
++++.+..-
T Consensus 222 ~~l~~~l~~ 230 (324)
T PF11838_consen 222 RLLDLLLSN 230 (324)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 888888774
No 466
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.34 E-value=1.8e+02 Score=21.38 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=28.3
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHH
Q 007077 368 KCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKA 406 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 406 (619)
...+.+.|.++++.++.+...+|..+..++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445677778888888878888888888877777765544
No 467
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.95 E-value=4.3e+02 Score=25.55 Aligned_cols=134 Identities=12% Similarity=0.117 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHhC---CC---------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007077 386 DAASWTSIICGLAMN---GK---------INKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVY 452 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~---g~---------~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 452 (619)
|+.+|-.++..--.. +. .+.-+.++++.++. .|+. ......+..+.+..+.+...+-|+.+...+
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 788998888653322 11 45677889998888 5554 466777888888888888889999988752
Q ss_pred CCCCChhHHHHHHHHHHh---cCCHHHHHHHHhhCC----C--CCC----ccc-------HHHHHHHHHHHHHcCCHHHH
Q 007077 453 QIQPKLEHYGCLIDLLGR---AGLLDEAEELIRKIP----N--ENN----EII-------VPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~----~--~~~----~~~-------~~~~~~l~~~~~~~g~~~~a 512 (619)
+-+...|...++.... .-.+++...+|.+.. . .+. .+. ..++.-+...+...|..+.|
T Consensus 96 --~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 96 --PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred --CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3357788888776654 335778888776543 1 110 111 11222233345678999999
Q ss_pred HHHHHHHhccC
Q 007077 513 EKLAALLEKIE 523 (619)
Q Consensus 513 ~~~~~~~~~~~ 523 (619)
..+++-+.+++
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 99999988876
No 468
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.76 E-value=3.6e+02 Score=24.64 Aligned_cols=166 Identities=11% Similarity=0.002 Sum_probs=81.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS-HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.++..+-+.|+++++...++++...+...+..--+.+..+|- ..|....+++++........-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 355667788888888888888888866666554444444542 234445556666555443211111 222223322221
Q ss_pred c------CCHHHHHHHHhhCCCCC-CcccHHH-HHHH-HHHH---H-------HcCCHHHHHHHHHHHh-----ccCCCC
Q 007077 471 A------GLLDEAEELIRKIPNEN-NEIIVPL-YGAL-LSAC---R-------IYGNVDMGEKLAALLE-----KIESKD 526 (619)
Q Consensus 471 ~------g~~~~A~~~~~~~~~~~-~~~~~~~-~~~l-~~~~---~-------~~g~~~~a~~~~~~~~-----~~~p~~ 526 (619)
. .--.+.+.+++....+. ..+.... |.-+ .+.| + +..-.+.|.+.|+.+. .+.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 0 11234555555543111 1111111 1111 1111 1 1112366777777764 266777
Q ss_pred cchHHHH----HHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 527 SSFHTLL----ANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 527 ~~~~~~l----~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
|.-.... +-.|.-.|+.++|.++.++..+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7632221 2235568999999999998876544
No 469
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.42 E-value=1.1e+02 Score=25.21 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
-+.|.++.+-|- .... ...........|++..|.++.+.+...+|++..+....+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~---vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADK---VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHH---HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 355666666653 2122 44455566789999999999999999999999988888888776654
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.36 E-value=2.3e+02 Score=23.54 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=16.5
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
.+...+..-.|.++++.+.+. +..-+..|...-++.+...|
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 29 LLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 333333334444555444443 22222333333344444444
No 471
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.80 E-value=3.6e+02 Score=24.41 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 007077 393 IICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m 413 (619)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 455555556666666655543
No 472
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.54 E-value=1.1e+02 Score=18.48 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..|+.+-...++|++|.+=+++..+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 578888888899999999888877654
No 473
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.42 E-value=85 Score=23.46 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 300 (619)
.....+++..+++.++.+++.+|..+..++...+
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3345566666666666666666666666664443
No 474
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=33.42 E-value=6.9e+02 Score=27.51 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=102.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH---hccCChhHHHHHHHHHHHhCCCCChhhH
Q 007077 50 SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV---GWLGEVKKGEKVHGYVVKTGLEFDTYVC 126 (619)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 126 (619)
.-+...++.||..+.+.|+.++....-..|.+. .+.++..|..-+... ...++...+..+|+.....-.. +..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~--v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNS--VPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccccc--chHH
Confidence 446667788888888999988877777777664 233444454444333 3446667777777766653332 2233
Q ss_pred HHHHHH-------hHhcCChhHHHHHHccCCC-------CCeecH---HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCC
Q 007077 127 NSIMDM-------YGVLGKICNVKKLFDEMPD-------KDVVSW---NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPD 189 (619)
Q Consensus 127 ~~li~~-------~~~~g~~~~A~~~~~~~~~-------~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 189 (619)
.-.++. +-+.++++..+.+|.+... .....| .-+=..|..+-..+....+|..-.. .+ .|
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~-~~--~D 263 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK-QP--LD 263 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cc--ch
Confidence 333322 2334667777777776553 111122 2222344444444666666665544 23 23
Q ss_pred hhhHHHHHHHhh-------cCCChHHHHH-------HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCC
Q 007077 190 EGTVVSTLSACT-------ALKNLELGKE-------IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMP 251 (619)
Q Consensus 190 ~~~~~~ll~~~~-------~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (619)
..+-..-+.-.. ...+++.+.+ .++...+..++-...|..+++...+.|..-.-...++++.
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 222211111111 1122222222 2333333344455567778888888888766655555543
No 475
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.39 E-value=4.3e+02 Score=25.11 Aligned_cols=69 Identities=10% Similarity=0.155 Sum_probs=36.0
Q ss_pred CcHHHHHHHHH-HHHHcCCCCChh----HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 007077 335 GALEQGKWIHG-YINENRITVDAV----VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 335 ~~~~~a~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
..+++.....+ +|.+.++ |++. +|+.++++-. |.+-.++...-.-+....|..|+.+++..|+.+-.+-
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave----WnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE----WNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh----hchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHH
Confidence 34444444443 4445554 4433 5666665533 2222222111111245578899999999998776543
No 476
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.20 E-value=5e+02 Score=25.84 Aligned_cols=55 Identities=9% Similarity=-0.033 Sum_probs=33.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHHHHc
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKF--ILVALLTGCA--QLGALEQGKWIHGYINEN 350 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 350 (619)
.+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888888888888776 555544 3344444443 234566666666665543
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.63 E-value=1.9e+02 Score=24.68 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 007077 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 414 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
...|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 344555544322 2333333334455666666666654 4445555555556666666654
No 478
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.17 E-value=2.5e+02 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=14.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 007077 292 MINGYVQFNRFDEAVALFREMQIIRLKPDKFI 323 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 323 (619)
++..+...+++-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34444444444444455554444443333333
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.95 E-value=4e+02 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=30.6
Q ss_pred HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 378 IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
+|+-..+|.+.....++..| ..+++++|.+.+.++.+.|+.|...
T Consensus 230 VfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 33334445565566666554 4568899999999998988887654
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.76 E-value=1.5e+02 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=12.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREM 312 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m 312 (619)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445556666666666666654
No 481
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.17 E-value=5.8e+02 Score=25.94 Aligned_cols=262 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA-----------LEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
++++|+++.+ -.|....|...+....+.|. +++-.++++.+.+.| ...+....++.|.+.
T Consensus 29 d~~eav~y~k------~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHK------SIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHH------hCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeeccccc
Q ss_pred CCHHHHHHHHHhcCCC-------------ChhhHHHHHHHH-----HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 370 GLIEKALEIFYELREK-------------DAASWTSIICGL-----AMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~-------------~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
+++++|...+++-.+. .......++... .++|.++ +..+++.+...|+....--..+.---
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpD-arlL~e~~~a~G~~a~EGG~ISYnlP 178 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPD-ARLLAEIILAGGFTSFEGGGISYNIP 178 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCc-HHHHHHHHHHcCCCccCCCcceeccc
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL-DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
|++.=-++++...|+.+-+ |+..|...|-. .. +.|--|...-.||+...--.++.++....+-
T Consensus 179 YsK~vpLe~si~~WqyvdR-------------L~g~y~e~gv~Inr--E~FGpLtgtLvPPsisiav~ilE~Lla~eqG- 242 (480)
T TIGR01503 179 YAKNVTLEKSLEDWQYCDR-------------LVGFYEEQGVHINR--EPFGPLTGTLVPPSISNAIGIIEGLLAAEQG- 242 (480)
T ss_pred cCCCCCHHHHHHHHHHHHH-------------HHHHHHhcCceecc--ccccCCCCCccChHHHHHHHHHHHHHHHHcC-
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccC--ceeEEEECCEEEEEEeCCCCCCchHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVP--GCSSIEINGIIHEFLVGDPSHSEMKE 588 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (619)
..++.-.|...|+..+=...+..+++..-.-.+ |+.-+.+...+|.++.+-..++....
T Consensus 243 -------------------Vksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~A~ 303 (480)
T TIGR01503 243 -------------------VKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAF 303 (480)
T ss_pred -------------------CeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhhhh
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 007077 589 IYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~ 607 (619)
..-..+-+...+....+.+
T Consensus 304 ~lis~~a~~A~l~gA~KvI 322 (480)
T TIGR01503 304 GVISTATTIAALSGATKVI 322 (480)
T ss_pred hHHHHHHHHHHHcCCCEEE
No 482
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.06 E-value=6.1e+02 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=14.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhh
Q 007077 101 LGEVKKGEKVHGYVVKTGLEFDTYV 125 (619)
Q Consensus 101 ~~~~~~a~~~~~~~~~~g~~~~~~~ 125 (619)
.++.+.|..++..+...|..|....
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3566666666666666665554433
No 483
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=6.5e+02 Score=26.39 Aligned_cols=49 Identities=22% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHH-hCCChHHHHHHHHHH
Q 007077 365 MYAKCGLIEKALEIFYELRE----KDAASWTSIICGLA-MNGKINKALELFSQM 413 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 413 (619)
.+.+.|-+..|.++-+-+.. .|+.....+|+.|+ +..++.-.+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555444432 14444445555543 344555555555544
No 484
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.35 E-value=4.3e+02 Score=24.23 Aligned_cols=70 Identities=13% Similarity=-0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.+..+..++...|++-++++.-.++.. ..+.++.+|---..+.+..=+..+|..-+.++.+++|.-..+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~-~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR-HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 455566777788888888888887773 3555655566556666666688899999999999998755533
No 485
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=30.23 E-value=8.7e+02 Score=27.70 Aligned_cols=249 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHcCChhHHHHHHHHH------HHcCCCCCHHHHHHHHHHHHccCc---HHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 294 NGYVQFNRFDEAVALFREM------QIIRLKPDKFILVALLTGCAQLGA---LEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
+++...+.++.|+..|++. ++.|...--..=.+++.-....|+ +++|..-|+.+...--.|=...-.+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV- 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH-
Q ss_pred HHHhCCCHHHHHHHHHhcCCC-------------------------ChhhHHHHHHHHHhC-------------------
Q 007077 365 MYAKCGLIEKALEIFYELREK-------------------------DAASWTSIICGLAMN------------------- 400 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~------------------- 400 (619)
|.+.|++++-.+.+.-..++ ...++.-|+-+.-..
T Consensus 562 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 562 -YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred -HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Q ss_pred -----------------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 401 -----------------------------GKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 401 -----------------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
|..---.++|++..+ .+|-.+...+.-..+..|.++-+.+....+.+
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 716 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAE- 716 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-
Q ss_pred cCCCCChhHHHHH-------------HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007077 452 YQIQPKLEHYGCL-------------IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518 (619)
Q Consensus 452 ~~~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (619)
.+.--..+-+.. +.++.....++++.+.+........... +..++.-+...++.+.-..+.+.
T Consensus 717 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 792 (932)
T PRK13184 717 -VSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYA---FDLFAIQALLDEEGESIIQLLQL 792 (932)
T ss_pred -HhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHH---HHHHHHHHHHhccchHHHHHHHH
Q ss_pred HhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHH
Q 007077 519 LEKIESKDSS---FHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 519 ~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+..-.+.... .....+++|.-..+|++|-+++..
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (932)
T PRK13184 793 IYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNR 829 (932)
T ss_pred HHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHh
No 486
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=2.3e+02 Score=26.30 Aligned_cols=60 Identities=15% Similarity=0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..+=.++...++++.|.+..++...++|.++.-..--+-+|.+.|...-|.+-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456788899999999999999999999977788888999999999998888876553
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.57 E-value=8.2e+02 Score=27.21 Aligned_cols=302 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChh
Q 007077 92 PFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFE 171 (619)
Q Consensus 92 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (619)
+.+-+.|...|++++|.++-..-.+ .-..++..-...|.+.+++..|-+++-++ ..++..+.--+....+.+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPD----ALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHhHhcCCCCCChhhHHHHHHH------hhcCCChH------------HHHHHHHHHHHh--ccCChhHHHHHH
Q 007077 172 DAVDVFRRMRQGCNLMPDEGTVVSTLSA------CTALKNLE------------LGKEIHRYINQE--LEFTPIMGNALL 231 (619)
Q Consensus 172 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~------~~~~~~~~------------~a~~~~~~~~~~--~~~~~~~~~~l~ 231 (619)
++..|-.=+- ..++|...+-..++.. ..+.++++ .-..+-+.+... ...+...+.+..
T Consensus 434 -~L~~~L~KKL-~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~ 511 (911)
T KOG2034|consen 434 -ALRTFLDKKL-DRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVY 511 (911)
T ss_pred -HHHHHHHHHH-hhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHH
Q ss_pred HHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 007077 232 DMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFRE 311 (619)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (619)
......|+.+....+-.-|.+ |..++.-+++.+.+++|++++... .++.......-.+... ........
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~--~~~el~yk~ap~Li~~----~p~~tV~~ 580 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQ--RNPELFYKYAPELITH----SPKETVSA 580 (911)
T ss_pred HHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHhhhHHHhc----CcHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh
Q 007077 312 MQIIRLKPDKFILVALLTGCAQL---GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAA 388 (619)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (619)
....+-.-+..-...++.-+.+. .....+....+.....-...++...|.++..|.+..+-+.-..+-.....++..
T Consensus 581 wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~ 660 (911)
T KOG2034|consen 581 WMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRV 660 (911)
T ss_pred HHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccc
Q ss_pred hHHH--HHHHHHhCCChHHHHHHHHHHH
Q 007077 389 SWTS--IICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 389 ~~~~--l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
.|.. .++.|.+.+.-..+..++..|.
T Consensus 661 ~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 661 HYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred eecHHHHHHHHHHhCccceeeeHHHHHH
No 488
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.16 E-value=6.1e+02 Score=25.58 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=44.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
|+++...| ..++..+....... ++...+.....++....+......+.+.+. .++..+......++.+.++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Confidence 56666666 45666555555332 222233333333332222221222222222 24555566666666666655
Q ss_pred hHHHHHHccCCCCCeecHHHHHHHHHc
Q 007077 140 CNVKKLFDEMPDKDVVSWNVSISGHVK 166 (619)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~li~~~~~ 166 (619)
.....+..-+..+++......+.++..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 555444444444444444444444443
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.09 E-value=2.3e+02 Score=24.27 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
..-.|.++++.+.+.+...+..+....+..+...|-
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333455555555554444444433334444444443
No 490
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.99 E-value=3.1e+02 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHh
Q 007077 440 EGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIR 482 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (619)
.+.++|+.|..+ ++--. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544 33333 3344455555555555555555554
No 491
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.80 E-value=1.6e+02 Score=21.36 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=21.3
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 34 SHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
+.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..++.
T Consensus 6 ~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 6 QNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 45555555555553332232 11133344444442 444444445555544
No 492
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.90 E-value=3.6e+02 Score=24.51 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 397 LAMNGKINKALELFSQMISGGAK-PDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
+...|+++.|+++.+.+++.|.. |+.+ ++-+++ .++....-....+. |-+.++.....+..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~a-g~~~e~~~~~~~~~------- 156 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASA-GESVEPYFLRVFLD------- 156 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHc-CCCCChHHHHHHHH-------
Confidence 34678899999999999888744 4332 222221 11111111111221 32333322222111
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH---------HcCCHHHHHHHHHHHhccCCCCcc
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACR---------IYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+-... .-|+.+....|......+. ..++...|...++++.+++|.-..
T Consensus 157 ------l~~~~-dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 157 ------LTTEW-DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred ------HHhcC-CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 11111 1344455555666665552 345778888899999888876543
No 493
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=27.70 E-value=1.7e+02 Score=21.60 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=18.8
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 300 (619)
+....++|..+++.++.++..+|..+.+++-..|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444555555565555556666655555554444
No 494
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.57 E-value=2.8e+02 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
...+...|.+.|++++|.++|+.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456677888888888888887764
No 495
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.42 E-value=2.8e+02 Score=26.88 Aligned_cols=50 Identities=6% Similarity=-0.047 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCCCC-CC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 474 LDEAEELIRKIPNE-NN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 474 ~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
.++...+++.+... |+ .-....|-.++......|.++..+.+|+++...+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 34555555544411 11 1122345666666666666666666666665444
No 496
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=27.18 E-value=9.3e+02 Score=27.12 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=8.2
Q ss_pred HHhcCChhhHHHHhcc
Q 007077 234 YCKCGCLSEARELFDE 249 (619)
Q Consensus 234 ~~~~g~~~~A~~~~~~ 249 (619)
.+..|+.+-+.-+++.
T Consensus 662 A~~~g~~~iv~~Ll~~ 677 (823)
T PLN03192 662 AMAEDHVDMVRLLIMN 677 (823)
T ss_pred HHHCCcHHHHHHHHHc
Confidence 3445555555555543
No 497
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.05 E-value=6.3e+02 Score=25.37 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=56.6
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH--------HHhCCCHHHHHHHHHhcCCC
Q 007077 314 IIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM--------YAKCGLIEKALEIFYELREK 385 (619)
Q Consensus 314 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~ 385 (619)
...+.||..+.+.+...++..-..+-...+|+--.+.+ .|-...+-+||-. -.+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34588999988888877777777788888888777766 3333333333221 23455678899999988753
Q ss_pred ----ChhhHHHHHHHHH
Q 007077 386 ----DAASWTSIICGLA 398 (619)
Q Consensus 386 ----~~~~~~~l~~~~~ 398 (619)
|+.-+-.|..-|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 6666767766665
No 498
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.81 E-value=1.2e+02 Score=17.49 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCL 464 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l 464 (619)
.++.|..+|+..+.. .|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~~---hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV---HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh---CCCchHHHHH
Confidence 356677777776643 3666665443
No 499
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.64 E-value=2.5e+02 Score=29.71 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=40.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHH------HHHHHHHHhHHhcCCCCChhHHHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGG--AKPDDITFIGVLSACSHGGLVD------EGRRFFNTMTEVYQIQPKLEHYGC 463 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 463 (619)
+|..+|..+|++-.+.++++...... -+.=...++..++...+.|.++ .+.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 67777777777777777777776542 1111235566666666666554 233333322 34455556655
Q ss_pred HHHHH
Q 007077 464 LIDLL 468 (619)
Q Consensus 464 l~~~~ 468 (619)
|+.+-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 55443
No 500
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.23 E-value=4.9e+02 Score=23.52 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKP-----DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALI 363 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (619)
+|.|+--|.-...+.+|.+.|. ...|+.| +...=..-+......|+.+.|.+....+...-+..|..++-.|.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq 106 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQ 106 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHH
Q ss_pred HH----HHhCCCHHHHHHHHHh
Q 007077 364 EM----YAKCGLIEKALEIFYE 381 (619)
Q Consensus 364 ~~----~~~~g~~~~A~~~~~~ 381 (619)
.. ..+.|..++|+++++.
T Consensus 107 ~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 107 QLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Done!