Query 007077
Match_columns 619
No_of_seqs 756 out of 4131
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 16:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-43 1.3E-47 372.9 34.6 492 34-536 65-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.1E-41 1E-45 358.3 33.4 482 63-555 63-578 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.6E-32 239.5 39.9 372 161-542 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-27 1.3E-31 235.5 38.1 351 197-555 6-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.4E-27 1.2E-31 239.4 22.1 184 287-471 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.5E-26 8.6E-31 233.0 20.9 203 303-506 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 9.2E-24 3.1E-28 219.4 30.6 425 125-556 8-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.1E-23 7E-28 212.9 31.5 367 218-609 20-447 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.7E-23 9.1E-28 215.9 31.0 447 55-533 8-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4E-26 204.7 36.0 421 123-557 25-492 (537)
11 3fp2_A TPR repeat-containing p 99.9 6.8E-22 2.3E-26 206.5 34.0 433 52-531 24-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.8E-21 6.1E-26 198.5 34.0 346 154-527 26-415 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 5.7E-24 177.7 35.3 322 224-604 3-357 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.6E-19 8.8E-24 176.4 29.3 314 189-539 2-352 (359)
15 1b89_A Protein (clathrin heavy 99.8 4.7E-19 1.6E-23 170.9 22.9 285 34-381 15-307 (449)
16 1xi4_A Clathrin heavy chain; a 99.8 7.9E-16 2.7E-20 165.3 49.3 482 9-550 863-1378(1630)
17 3hym_B Cell division cycle pro 99.8 5E-18 1.7E-22 165.0 29.7 255 285-544 55-322 (330)
18 1fch_A Peroxisomal targeting s 99.8 8.9E-19 3E-23 173.3 22.8 279 268-553 38-356 (368)
19 3hym_B Cell division cycle pro 99.8 1.4E-17 4.9E-22 161.8 30.3 267 283-555 19-298 (330)
20 1b89_A Protein (clathrin heavy 99.8 2E-19 6.8E-24 173.5 12.5 285 235-550 14-305 (449)
21 2xm6_A Protein corresponding t 99.8 3E-16 1E-20 161.2 36.6 364 122-539 38-452 (490)
22 1xi4_A Clathrin heavy chain; a 99.8 8.9E-15 3E-19 157.3 48.2 353 153-551 984-1340(1630)
23 4eqf_A PEX5-related protein; a 99.8 4.1E-18 1.4E-22 168.3 21.4 263 285-552 64-352 (365)
24 2ooe_A Cleavage stimulation fa 99.8 3.4E-16 1.2E-20 162.6 36.5 416 111-556 2-492 (530)
25 3mkr_A Coatomer subunit epsilo 99.8 6.3E-17 2.2E-21 153.2 27.9 270 265-549 9-287 (291)
26 2ooe_A Cleavage stimulation fa 99.8 4.3E-16 1.5E-20 161.8 36.3 423 76-525 2-495 (530)
27 2xm6_A Protein corresponding t 99.8 9.8E-16 3.4E-20 157.4 38.2 336 203-558 56-434 (490)
28 1fch_A Peroxisomal targeting s 99.8 1.1E-17 3.8E-22 165.4 20.7 293 296-607 35-350 (368)
29 3cv0_A Peroxisome targeting si 99.8 5.5E-17 1.9E-21 157.4 21.7 263 286-554 21-313 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 1.1E-16 3.9E-21 151.5 21.3 249 293-557 6-265 (291)
31 4g1t_A Interferon-induced prot 99.7 5.7E-16 2E-20 158.7 27.8 358 154-559 51-462 (472)
32 4eqf_A PEX5-related protein; a 99.7 1.4E-16 4.7E-21 157.3 22.1 233 320-556 64-310 (365)
33 4g1t_A Interferon-induced prot 99.7 5.9E-15 2E-19 151.2 28.6 382 88-534 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 146.8 22.5 266 322-607 22-306 (327)
35 3uq3_A Heat shock protein STI1 99.7 4.1E-15 1.4E-19 138.7 21.1 215 328-556 12-236 (258)
36 2pl2_A Hypothetical conserved 99.7 1.5E-15 5.3E-20 137.2 17.5 195 353-554 2-212 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-17 1.3E-21 170.1 6.3 147 20-168 127-286 (1134)
38 3uq3_A Heat shock protein STI1 99.7 4.2E-15 1.4E-19 138.6 19.2 237 287-535 6-255 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.7E-21 164.8 9.7 127 353-480 124-258 (1134)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6.3E-19 135.7 21.3 244 298-550 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.6E-18 140.0 26.6 382 94-555 9-420 (452)
42 3u4t_A TPR repeat-containing p 99.6 2.6E-14 8.9E-19 134.4 18.6 248 289-541 6-269 (272)
43 3e4b_A ALGK; tetratricopeptide 99.6 4.8E-14 1.7E-18 142.5 19.2 344 196-559 9-390 (452)
44 1ouv_A Conserved hypothetical 99.6 7.1E-13 2.4E-17 124.7 25.8 225 285-558 5-253 (273)
45 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.3E-18 134.3 21.4 245 285-539 96-365 (382)
46 1ouv_A Conserved hypothetical 99.6 7E-13 2.4E-17 124.7 24.9 232 254-528 5-257 (273)
47 2pl2_A Hypothetical conserved 99.6 3.3E-13 1.1E-17 121.8 20.4 195 284-484 3-211 (217)
48 2ho1_A Type 4 fimbrial biogene 99.6 8.3E-13 2.8E-17 122.5 23.4 169 358-529 73-245 (252)
49 2vq2_A PILW, putative fimbrial 99.6 4E-13 1.4E-17 122.1 20.7 197 356-555 8-210 (225)
50 4a1s_A PINS, partner of inscut 99.5 1.2E-13 4E-18 138.6 18.4 266 289-555 51-371 (411)
51 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-13 1.1E-17 125.3 20.1 199 356-557 37-239 (252)
52 2q7f_A YRRB protein; TPR, prot 99.5 8.9E-14 3E-18 128.3 15.5 143 388-534 92-234 (243)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-13 3.7E-18 127.6 15.9 200 354-557 21-223 (243)
54 3sf4_A G-protein-signaling mod 99.5 2E-13 6.9E-18 136.6 18.9 268 287-555 10-335 (406)
55 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.3E-17 118.8 22.5 175 356-533 42-222 (225)
56 3u4t_A TPR repeat-containing p 99.5 4.8E-13 1.6E-17 125.7 20.2 229 323-557 5-251 (272)
57 2h6f_A Protein farnesyltransfe 99.5 3.4E-13 1.2E-17 131.9 19.7 246 322-600 98-366 (382)
58 3ro2_A PINS homolog, G-protein 99.5 1.9E-13 6.6E-18 132.7 16.7 267 289-556 8-332 (338)
59 4e6h_A MRNA 3'-END-processing 99.5 9.6E-11 3.3E-15 122.3 37.1 442 67-535 46-582 (679)
60 3vtx_A MAMA; tetratricopeptide 99.5 7.9E-13 2.7E-17 116.0 18.4 167 386-557 4-171 (184)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-13 1.5E-17 126.1 17.9 221 285-516 42-269 (275)
62 4abn_A Tetratricopeptide repea 99.5 3.8E-13 1.3E-17 136.8 16.0 210 337-552 84-317 (474)
63 3sf4_A G-protein-signaling mod 99.5 3.6E-12 1.2E-16 127.4 21.8 296 198-545 17-365 (406)
64 4a1s_A PINS, partner of inscut 99.4 6.3E-12 2.2E-16 125.9 21.1 273 201-525 59-375 (411)
65 3ulq_A Response regulator aspa 99.4 2.5E-12 8.5E-17 127.5 17.0 226 329-555 111-367 (383)
66 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-12 6.4E-17 113.6 13.6 169 355-528 4-176 (184)
67 2ond_A Cleavage stimulation fa 99.4 6.7E-11 2.3E-15 113.1 25.3 222 303-528 33-276 (308)
68 4e6h_A MRNA 3'-END-processing 99.4 2.4E-10 8.1E-15 119.4 31.2 428 8-469 55-585 (679)
69 3ro2_A PINS homolog, G-protein 99.4 3.4E-12 1.2E-16 123.8 16.2 239 287-525 44-335 (338)
70 3nf1_A KLC 1, kinesin light ch 99.4 6.4E-13 2.2E-17 127.5 9.7 240 285-555 26-306 (311)
71 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.8E-17 125.1 11.4 239 255-525 27-310 (311)
72 4abn_A Tetratricopeptide repea 99.4 6.8E-12 2.3E-16 127.6 16.8 179 372-556 84-287 (474)
73 4gyw_A UDP-N-acetylglucosamine 99.4 6.9E-12 2.3E-16 132.6 16.9 164 386-555 8-173 (723)
74 2ond_A Cleavage stimulation fa 99.4 3E-11 1E-15 115.6 19.9 215 338-558 33-272 (308)
75 4i17_A Hypothetical protein; T 99.4 1.3E-11 4.4E-16 112.4 16.3 190 354-555 5-208 (228)
76 3ulq_A Response regulator aspa 99.4 1.2E-10 4.3E-15 115.2 24.0 231 292-524 109-370 (383)
77 1hz4_A MALT regulatory protein 99.4 5.6E-10 1.9E-14 110.1 28.5 265 291-555 19-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 2.5E-11 8.5E-16 106.3 15.9 162 390-555 11-172 (186)
79 4i17_A Hypothetical protein; T 99.3 8.5E-11 2.9E-15 107.0 19.6 206 319-537 5-224 (228)
80 3q15_A PSP28, response regulat 99.3 3.9E-10 1.3E-14 111.4 24.1 165 389-554 184-363 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.3E-15 101.7 16.7 170 357-530 9-181 (186)
82 3q15_A PSP28, response regulat 99.3 1.1E-10 3.7E-15 115.4 17.7 298 221-522 7-365 (378)
83 3qky_A Outer membrane assembly 99.2 7.9E-10 2.7E-14 102.9 20.7 210 354-607 13-252 (261)
84 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.5E-15 108.8 14.0 167 389-555 87-280 (283)
85 1hz4_A MALT regulatory protein 99.2 3.5E-08 1.2E-12 97.1 30.5 265 161-450 21-321 (373)
86 4gyw_A UDP-N-acetylglucosamine 99.2 1.6E-10 5.6E-15 122.1 13.3 133 419-555 5-139 (723)
87 1qqe_A Vesicular transport pro 99.2 8.1E-10 2.8E-14 104.6 16.6 172 358-531 79-278 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.5E-09 8.7E-14 96.8 18.5 181 356-559 4-216 (225)
89 3qky_A Outer membrane assembly 99.1 1.7E-09 5.7E-14 100.6 17.5 204 319-544 13-249 (261)
90 1qqe_A Vesicular transport pro 99.1 5.9E-10 2E-14 105.6 14.2 204 336-554 32-267 (292)
91 3edt_B KLC 2, kinesin light ch 99.1 2.6E-09 9.1E-14 100.4 18.3 199 323-522 45-281 (283)
92 3mv2_B Coatomer subunit epsilo 99.1 4.2E-09 1.5E-13 97.4 18.6 182 340-529 85-289 (310)
93 4ga2_A E3 SUMO-protein ligase 99.1 1.3E-10 4.5E-15 97.6 6.7 144 394-542 4-149 (150)
94 2fo7_A Synthetic consensus TPR 99.1 2.6E-09 8.8E-14 87.6 13.4 129 425-556 4-132 (136)
95 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-08 4.5E-13 91.0 18.2 175 375-558 5-199 (212)
96 4ga2_A E3 SUMO-protein ligase 99.0 4.1E-10 1.4E-14 94.6 7.4 124 428-555 3-128 (150)
97 3mv2_B Coatomer subunit epsilo 99.0 3.8E-08 1.3E-12 91.1 20.9 176 375-557 85-283 (310)
98 2pzi_A Probable serine/threoni 99.0 8.3E-10 2.8E-14 117.5 11.3 190 332-528 402-608 (681)
99 3qou_A Protein YBBN; thioredox 99.0 4E-09 1.4E-13 99.4 14.4 177 372-554 102-282 (287)
100 2fo7_A Synthetic consensus TPR 99.0 7.7E-09 2.6E-13 84.7 13.6 134 389-526 3-136 (136)
101 4gco_A Protein STI-1; structur 99.0 5E-09 1.7E-13 84.7 11.1 96 459-555 14-109 (126)
102 2r5s_A Uncharacterized protein 98.9 3.7E-09 1.3E-13 91.5 10.0 78 477-555 93-172 (176)
103 3gyz_A Chaperone protein IPGC; 98.9 4.6E-09 1.6E-13 87.6 10.0 104 453-557 30-134 (151)
104 3u3w_A Transcriptional activat 98.9 1.6E-07 5.4E-12 88.8 22.0 164 392-555 80-265 (293)
105 2uy1_A Cleavage stimulation fa 98.9 1.3E-06 4.3E-11 88.7 29.4 373 100-520 6-411 (493)
106 3urz_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 87.9 16.0 130 392-527 59-191 (208)
107 2vsy_A XCC0866; transferase, g 98.9 1.2E-08 4E-13 106.7 14.6 161 369-534 2-169 (568)
108 2yhc_A BAMD, UPF0169 lipoprote 98.9 4E-08 1.4E-12 88.9 16.0 187 321-528 4-219 (225)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 6.7E-08 2.3E-12 92.1 18.4 224 298-549 3-254 (307)
110 2pzi_A Probable serine/threoni 98.9 5.6E-08 1.9E-12 103.4 19.5 147 387-539 433-580 (681)
111 4gco_A Protein STI-1; structur 98.9 1.3E-08 4.3E-13 82.3 10.3 117 418-537 8-125 (126)
112 3urz_A Uncharacterized protein 98.9 1.5E-08 5.3E-13 90.3 11.5 159 392-556 9-186 (208)
113 2vgx_A Chaperone SYCD; alterna 98.8 7.9E-09 2.7E-13 86.3 8.4 98 458-556 21-118 (148)
114 3dra_A Protein farnesyltransfe 98.8 5.7E-07 1.9E-11 84.2 21.8 223 301-530 48-296 (306)
115 2uy1_A Cleavage stimulation fa 98.8 6.1E-07 2.1E-11 91.0 23.1 356 166-554 6-411 (493)
116 2vsy_A XCC0866; transferase, g 98.8 4.2E-08 1.4E-12 102.5 15.0 147 334-485 2-155 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.9E-08 2.4E-12 86.4 14.5 134 388-527 7-155 (213)
118 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-07 3.8E-12 89.9 16.5 168 388-555 76-265 (293)
119 3qou_A Protein YBBN; thioredox 98.8 5.7E-08 1.9E-12 91.5 13.9 158 420-606 114-274 (287)
120 2r5s_A Uncharacterized protein 98.8 5.7E-08 2E-12 83.9 12.9 158 358-520 8-171 (176)
121 3dra_A Protein farnesyltransfe 98.8 4.4E-06 1.5E-10 78.2 25.1 213 337-555 49-286 (306)
122 3rjv_A Putative SEL1 repeat pr 98.8 3E-07 1E-11 82.0 16.5 160 355-524 17-199 (212)
123 2ifu_A Gamma-SNAP; membrane fu 98.7 1.1E-07 3.6E-12 90.7 13.8 200 333-554 3-222 (307)
124 2xcb_A PCRH, regulatory protei 98.7 1E-07 3.4E-12 79.0 11.8 98 458-556 18-115 (142)
125 1a17_A Serine/threonine protei 98.7 1.1E-07 3.8E-12 81.0 12.5 129 424-555 15-145 (166)
126 3upv_A Heat shock protein STI1 98.7 7.6E-08 2.6E-12 77.8 10.3 98 458-556 4-101 (126)
127 4f3v_A ESX-1 secretion system 98.7 1.5E-07 5E-12 86.0 12.6 137 391-534 106-248 (282)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.4E-07 1.1E-11 81.8 15.0 128 358-486 8-149 (213)
129 1na0_A Designed protein CTPR3; 98.7 1.9E-07 6.6E-12 74.9 11.7 116 423-541 10-125 (125)
130 2vyi_A SGTA protein; chaperone 98.7 1.5E-07 5E-12 76.4 11.0 118 423-543 13-130 (131)
131 2lni_A Stress-induced-phosphop 98.7 1.4E-07 4.9E-12 76.8 10.8 117 423-542 17-133 (133)
132 2c2l_A CHIP, carboxy terminus 98.7 8.7E-08 3E-12 89.8 10.1 188 355-555 3-198 (281)
133 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5E-12 81.4 10.8 120 434-556 22-144 (177)
134 3u3w_A Transcriptional activat 98.6 5.7E-06 1.9E-10 78.0 22.6 161 362-522 81-266 (293)
135 1p5q_A FKBP52, FK506-binding p 98.6 1.7E-07 5.7E-12 90.4 12.0 145 387-554 147-292 (336)
136 4f3v_A ESX-1 secretion system 98.6 1E-07 3.4E-12 87.1 9.4 185 368-557 18-238 (282)
137 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 79.7 13.3 132 424-555 28-175 (203)
138 3rkv_A Putative peptidylprolyl 98.6 3.9E-07 1.3E-11 77.4 11.6 120 461-606 14-151 (162)
139 2lni_A Stress-induced-phosphop 98.6 4.4E-07 1.5E-11 73.8 11.4 100 456-556 14-113 (133)
140 3gyz_A Chaperone protein IPGC; 98.6 2.7E-07 9.4E-12 76.8 10.2 107 418-527 31-138 (151)
141 2fbn_A 70 kDa peptidylprolyl i 98.6 3.1E-08 1.1E-12 87.6 4.5 171 363-555 11-185 (198)
142 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.6E-12 75.6 7.8 97 460-557 19-115 (121)
143 2vgx_A Chaperone SYCD; alterna 98.6 1.8E-07 6.2E-12 77.9 8.8 116 410-530 10-126 (148)
144 2qfc_A PLCR protein; TPR, HTH, 98.6 3.7E-06 1.3E-10 79.3 18.9 165 358-522 77-266 (293)
145 2kck_A TPR repeat; tetratricop 98.6 2.4E-07 8.1E-12 72.7 8.8 100 458-558 6-108 (112)
146 1elw_A TPR1-domain of HOP; HOP 98.6 9.2E-07 3.2E-11 70.0 12.3 95 460-555 6-100 (118)
147 3gw4_A Uncharacterized protein 98.6 8.5E-07 2.9E-11 78.4 13.3 156 368-523 4-177 (203)
148 3q49_B STIP1 homology and U bo 98.5 5.2E-07 1.8E-11 74.0 10.7 100 456-556 7-106 (137)
149 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.9E-11 70.3 12.4 98 458-556 9-106 (125)
150 3sz7_A HSC70 cochaperone (SGT) 98.5 3.5E-07 1.2E-11 77.8 9.5 110 422-534 11-120 (164)
151 4gcn_A Protein STI-1; structur 98.5 2.8E-07 9.6E-12 74.4 8.3 95 460-555 10-111 (127)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.7E-11 69.6 11.6 112 423-537 5-116 (118)
153 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.7E-11 71.1 11.5 99 457-556 11-109 (131)
154 2c2l_A CHIP, carboxy terminus 98.5 2.2E-06 7.4E-11 80.2 14.7 188 324-522 7-199 (281)
155 2e2e_A Formate-dependent nitri 98.5 6.2E-07 2.1E-11 77.4 10.0 128 398-530 21-152 (177)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 1.8E-07 6.2E-12 82.5 6.6 146 434-607 16-176 (198)
157 3upv_A Heat shock protein STI1 98.5 9.5E-07 3.3E-11 71.2 10.3 113 423-538 5-123 (126)
158 2xcb_A PCRH, regulatory protei 98.4 7.1E-07 2.4E-11 73.8 9.3 113 419-534 14-127 (142)
159 2dba_A Smooth muscle cell asso 98.4 2.6E-06 8.9E-11 70.7 12.3 111 423-537 29-143 (148)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 1.6E-06 5.3E-11 73.8 11.0 95 387-485 11-106 (164)
161 2dba_A Smooth muscle cell asso 98.4 3.6E-06 1.2E-10 69.8 13.0 100 456-556 26-128 (148)
162 1a17_A Serine/threonine protei 98.4 3.9E-06 1.3E-10 71.2 13.0 128 388-520 14-144 (166)
163 3q7a_A Farnesyltransferase alp 98.4 0.00021 7.3E-09 67.5 25.8 229 296-531 64-341 (349)
164 3q7a_A Farnesyltransferase alp 98.4 2.8E-05 9.5E-10 73.5 19.7 214 336-555 69-330 (349)
165 3k9i_A BH0479 protein; putativ 98.4 2.8E-07 9.4E-12 73.3 4.9 85 471-555 3-89 (117)
166 1elr_A TPR2A-domain of HOP; HO 98.4 2.1E-06 7.3E-11 69.4 10.4 96 459-555 5-107 (131)
167 3q49_B STIP1 homology and U bo 98.3 2E-06 6.8E-11 70.4 9.5 102 421-525 8-109 (137)
168 1p5q_A FKBP52, FK506-binding p 98.3 3.3E-06 1.1E-10 81.2 12.2 99 458-556 147-259 (336)
169 4b4t_Q 26S proteasome regulato 98.3 6.5E-06 2.2E-10 82.6 14.5 166 390-555 58-244 (434)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.5E-06 1.5E-10 84.1 13.1 146 386-554 267-413 (457)
171 2xev_A YBGF; tetratricopeptide 98.3 6.2E-06 2.1E-10 66.5 11.1 92 464-555 8-104 (129)
172 2hr2_A Hypothetical protein; a 98.3 2.7E-06 9.3E-11 69.9 8.6 61 495-555 59-130 (159)
173 3ro3_A PINS homolog, G-protein 98.3 4.7E-06 1.6E-10 70.2 10.5 96 460-555 51-157 (164)
174 1wao_1 Serine/threonine protei 98.3 1.3E-06 4.6E-11 88.3 8.2 120 430-552 14-135 (477)
175 2kck_A TPR repeat; tetratricop 98.2 5.2E-06 1.8E-10 64.8 9.4 101 424-527 8-111 (112)
176 3dss_A Geranylgeranyl transfer 98.2 0.00013 4.6E-09 68.5 20.3 49 507-555 252-303 (331)
177 1hxi_A PEX5, peroxisome target 98.2 3.7E-06 1.3E-10 67.1 8.4 100 425-527 20-119 (121)
178 1ihg_A Cyclophilin 40; ppiase 98.2 6.3E-06 2.2E-10 80.2 11.2 112 423-555 224-335 (370)
179 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.5E-10 68.1 11.2 134 390-523 12-159 (164)
180 1elr_A TPR2A-domain of HOP; HO 98.2 4.7E-06 1.6E-10 67.3 8.6 112 424-538 6-123 (131)
181 2xev_A YBGF; tetratricopeptide 98.2 1.7E-05 5.9E-10 63.8 11.9 105 428-535 8-118 (129)
182 2if4_A ATFKBP42; FKBP-like, al 98.2 2.6E-06 9E-11 82.0 8.0 150 387-557 179-329 (338)
183 1ihg_A Cyclophilin 40; ppiase 98.2 8.2E-06 2.8E-10 79.4 11.4 140 387-549 223-363 (370)
184 3dss_A Geranylgeranyl transfer 98.1 0.00064 2.2E-08 63.9 22.7 195 337-537 90-319 (331)
185 1dce_A Protein (RAB geranylger 98.1 7E-05 2.4E-09 77.1 17.7 170 371-545 44-244 (567)
186 3rkv_A Putative peptidylprolyl 98.1 3.7E-06 1.3E-10 71.2 6.9 78 458-536 63-141 (162)
187 1wao_1 Serine/threonine protei 98.1 4.6E-06 1.6E-10 84.4 8.5 113 366-482 16-134 (477)
188 4gcn_A Protein STI-1; structur 98.1 3.7E-05 1.3E-09 61.8 12.2 27 390-416 86-112 (127)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.1E-05 3.9E-10 81.1 11.1 64 493-556 317-380 (457)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 9.8E-06 3.4E-10 78.0 9.6 155 356-528 179-334 (338)
191 3k9i_A BH0479 protein; putativ 98.1 2.7E-06 9.2E-11 67.5 4.7 95 435-530 3-98 (117)
192 2l6j_A TPR repeat-containing p 98.1 7.9E-07 2.7E-11 69.7 1.3 95 457-552 3-103 (111)
193 4b4t_Q 26S proteasome regulato 98.1 3.7E-05 1.3E-09 77.0 14.0 162 394-555 11-203 (434)
194 2hr2_A Hypothetical protein; a 98.1 1.4E-05 4.8E-10 65.7 8.7 76 460-535 59-144 (159)
195 3n71_A Histone lysine methyltr 98.0 5.4E-05 1.8E-09 76.0 13.9 126 432-557 319-465 (490)
196 3ma5_A Tetratricopeptide repea 98.0 2.5E-05 8.6E-10 59.6 8.9 66 490-555 4-69 (100)
197 1na3_A Designed protein CTPR2; 98.0 1.9E-05 6.4E-10 59.0 7.0 83 458-541 9-91 (91)
198 2l6j_A TPR repeat-containing p 97.9 0.00011 3.6E-09 57.1 11.5 100 493-612 4-103 (111)
199 2kat_A Uncharacterized protein 97.9 4.4E-05 1.5E-09 60.0 8.4 79 476-555 3-81 (115)
200 3n71_A Histone lysine methyltr 97.8 5.6E-05 1.9E-09 75.9 8.9 123 467-607 318-455 (490)
201 1zu2_A Mitochondrial import re 97.7 1.2E-05 4.2E-10 65.9 3.0 49 509-557 62-121 (158)
202 1klx_A Cysteine rich protein B 97.7 0.00025 8.6E-09 57.7 10.8 89 464-557 31-127 (138)
203 1na3_A Designed protein CTPR2; 97.7 0.00029 1E-08 52.2 10.2 65 492-556 8-72 (91)
204 1dce_A Protein (RAB geranylger 97.7 0.00039 1.3E-08 71.6 13.4 152 400-556 42-221 (567)
205 3bee_A Putative YFRE protein; 97.7 0.00025 8.6E-09 52.8 8.8 69 490-558 3-74 (93)
206 3qwp_A SET and MYND domain-con 97.6 0.00019 6.7E-09 70.9 9.4 119 465-601 294-427 (429)
207 1klx_A Cysteine rich protein B 97.6 0.00067 2.3E-08 55.2 11.1 112 401-524 9-128 (138)
208 2kat_A Uncharacterized protein 97.6 0.00019 6.5E-09 56.3 7.4 83 441-526 4-86 (115)
209 3lvg_A Clathrin heavy chain 1; 97.5 0.00016 5.5E-09 69.5 7.2 112 356-480 410-534 (624)
210 1zu2_A Mitochondrial import re 97.5 6.7E-05 2.3E-09 61.5 4.0 22 507-528 105-126 (158)
211 3ly7_A Transcriptional activat 97.3 0.0048 1.6E-07 58.3 14.1 60 495-555 279-338 (372)
212 3qww_A SET and MYND domain-con 97.3 0.00029 9.9E-09 69.5 6.2 85 471-555 311-410 (433)
213 2kc7_A BFR218_protein; tetratr 97.3 0.001 3.5E-08 50.2 8.1 66 464-530 6-72 (99)
214 3lvg_A Clathrin heavy chain 1; 97.2 2.1E-06 7.1E-11 82.1 -9.9 260 123-407 54-324 (624)
215 2kc7_A BFR218_protein; tetratr 97.2 0.0012 4.2E-08 49.7 7.4 89 428-528 6-96 (99)
216 3ma5_A Tetratricopeptide repea 97.1 0.0018 6.1E-08 49.1 8.1 62 387-450 7-69 (100)
217 1pc2_A Mitochondria fission pr 97.0 0.0022 7.5E-08 51.9 7.9 90 437-528 13-106 (152)
218 3qww_A SET and MYND domain-con 97.0 0.0039 1.3E-07 61.4 11.3 94 435-528 311-422 (433)
219 3qwp_A SET and MYND domain-con 96.9 0.0062 2.1E-07 60.1 12.0 100 431-530 296-413 (429)
220 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0043 1.5E-07 47.3 7.8 78 457-534 4-87 (104)
221 3ly7_A Transcriptional activat 96.6 0.025 8.6E-07 53.4 12.6 151 373-528 181-345 (372)
222 1pc2_A Mitochondria fission pr 96.6 0.0078 2.7E-07 48.7 7.9 80 403-485 14-98 (152)
223 3mkq_A Coatomer beta'-subunit; 96.6 0.2 6.8E-06 54.3 21.9 128 228-380 633-760 (814)
224 3bee_A Putative YFRE protein; 96.5 0.012 4.1E-07 43.5 8.3 73 455-528 3-78 (93)
225 3mkq_A Coatomer beta'-subunit; 96.4 0.027 9.2E-07 61.2 13.8 152 367-553 610-762 (814)
226 1nzn_A CGI-135 protein, fissio 96.3 0.049 1.7E-06 42.3 10.4 94 436-531 15-112 (126)
227 1wy6_A Hypothetical protein ST 96.2 0.31 1E-05 37.9 15.2 142 397-560 17-158 (172)
228 3u64_A Protein TP_0956; tetrat 96.2 0.014 4.7E-07 52.8 7.9 89 474-562 179-275 (301)
229 3mkq_B Coatomer subunit alpha; 95.8 0.57 1.9E-05 38.9 15.4 129 364-519 13-141 (177)
230 3mkq_B Coatomer subunit alpha; 95.8 0.64 2.2E-05 38.6 15.6 99 267-382 17-115 (177)
231 1nzn_A CGI-135 protein, fissio 95.7 0.043 1.5E-06 42.6 7.6 104 474-604 17-125 (126)
232 2v5f_A Prolyl 4-hydroxylase su 95.2 0.21 7.1E-06 37.7 10.4 61 495-555 7-74 (104)
233 1wy6_A Hypothetical protein ST 94.8 1.1 3.6E-05 35.0 14.7 139 297-454 18-156 (172)
234 1qsa_A Protein (soluble lytic 94.8 4.2 0.00014 41.8 26.6 117 401-521 228-347 (618)
235 3u64_A Protein TP_0956; tetrat 94.8 2.2 7.6E-05 38.6 18.5 87 337-425 179-280 (301)
236 4gns_B Protein CSD3, chitin bi 94.6 0.11 3.9E-06 54.3 9.4 56 499-554 343-398 (754)
237 4h7y_A Dual specificity protei 94.3 0.12 4.2E-06 41.1 6.9 58 470-528 72-129 (161)
238 2wpv_A GET4, UPF0363 protein Y 94.0 3.8 0.00013 37.8 20.6 182 233-451 22-217 (312)
239 4h7y_A Dual specificity protei 94.0 0.11 3.9E-06 41.3 5.9 56 505-560 72-127 (161)
240 3o48_A Mitochondria fission 1 93.9 0.73 2.5E-05 35.9 10.4 73 456-528 38-113 (134)
241 1y8m_A FIS1; mitochondria, unk 93.1 2.6 8.9E-05 33.3 13.0 74 455-528 36-112 (144)
242 3ffl_A Anaphase-promoting comp 92.3 0.75 2.6E-05 37.5 8.6 121 358-492 22-156 (167)
243 3o48_A Mitochondria fission 1 91.8 0.38 1.3E-05 37.4 6.1 66 417-485 35-105 (134)
244 1y8m_A FIS1; mitochondria, unk 91.4 1.2 4.3E-05 35.1 8.7 65 420-485 37-104 (144)
245 2ff4_A Probable regulatory pro 91.2 0.53 1.8E-05 45.6 8.0 68 496-563 174-246 (388)
246 4b4t_P 26S proteasome regulato 90.8 13 0.00046 36.4 18.2 225 299-539 29-287 (445)
247 3lpz_A GET4 (YOR164C homolog); 90.5 11 0.00038 35.0 23.1 180 233-450 21-215 (336)
248 2p58_C Putative type III secre 90.0 3.9 0.00013 29.7 9.3 86 337-427 23-108 (116)
249 4ady_A RPN2, 26S proteasome re 89.9 24 0.00082 38.0 28.2 246 233-485 383-656 (963)
250 4ady_A RPN2, 26S proteasome re 89.9 24 0.00082 38.0 34.7 252 264-520 383-656 (963)
251 2uwj_G Type III export protein 89.6 3.7 0.00013 29.8 8.9 86 337-427 22-107 (115)
252 4b4t_P 26S proteasome regulato 89.3 17 0.00059 35.6 17.5 197 268-482 29-262 (445)
253 3ffl_A Anaphase-promoting comp 89.1 0.95 3.2E-05 36.9 6.4 117 424-554 22-149 (167)
254 1v54_E Cytochrome C oxidase po 88.8 2.1 7.1E-05 31.3 7.2 64 402-467 25-88 (109)
255 4gns_B Protein CSD3, chitin bi 88.4 4.8 0.00016 42.3 12.8 51 432-485 347-398 (754)
256 1qsa_A Protein (soluble lytic 87.9 26 0.0009 35.9 36.3 389 126-559 75-482 (618)
257 2qx5_A Nucleoporin NIC96; mRNA 87.8 11 0.00039 38.8 15.0 46 156-203 154-199 (661)
258 2uwj_G Type III export protein 87.7 6.4 0.00022 28.6 9.4 59 263-324 47-105 (115)
259 3ltm_A Alpha-REP4; protein eng 87.2 13 0.00045 31.7 18.1 18 223-240 94-111 (211)
260 2p58_C Putative type III secre 87.2 6.9 0.00024 28.5 9.7 52 263-316 48-99 (116)
261 1v54_E Cytochrome C oxidase po 86.9 7.3 0.00025 28.5 9.1 63 169-232 25-87 (109)
262 4fhn_B Nucleoporin NUP120; pro 84.5 8.2 0.00028 43.4 13.2 96 462-557 846-968 (1139)
263 1zbp_A Hypothetical protein VP 83.6 20 0.00067 32.0 12.3 121 395-528 5-135 (273)
264 2y69_E Cytochrome C oxidase su 83.5 5.6 0.00019 30.9 7.6 64 402-467 68-131 (152)
265 3ltm_A Alpha-REP4; protein eng 82.2 22 0.00077 30.2 18.1 29 385-414 155-183 (211)
266 3txn_A 26S proteasome regulato 82.1 36 0.0012 32.5 19.8 291 227-558 22-345 (394)
267 3esl_A Checkpoint serine/threo 81.6 10 0.00035 32.1 9.3 72 488-560 75-148 (202)
268 3ltj_A Alpharep-4; protein eng 81.5 23 0.00079 29.8 18.8 80 222-301 26-105 (201)
269 4fhn_B Nucleoporin NUP120; pro 81.1 33 0.0011 38.5 16.3 187 326-522 817-1050(1139)
270 2ff4_A Probable regulatory pro 80.6 12 0.0004 36.1 11.0 69 391-460 175-247 (388)
271 2y69_E Cytochrome C oxidase su 80.0 15 0.0005 28.6 8.7 62 170-232 69-130 (152)
272 3lpz_A GET4 (YOR164C homolog); 77.9 44 0.0015 31.0 23.7 167 359-555 38-215 (336)
273 3ltj_A Alpharep-4; protein eng 77.0 32 0.0011 28.9 19.9 15 226-240 92-106 (201)
274 4b4t_R RPN7, 26S proteasome re 74.9 11 0.00038 36.8 9.1 94 358-451 133-237 (429)
275 3txn_A 26S proteasome regulato 73.2 66 0.0023 30.7 19.4 164 361-528 104-290 (394)
276 1wdy_A 2-5A-dependent ribonucl 73.0 23 0.00079 31.7 10.5 236 34-284 14-279 (285)
277 4b4t_R RPN7, 26S proteasome re 72.4 6.2 0.00021 38.6 6.6 61 424-485 133-195 (429)
278 1wdy_A 2-5A-dependent ribonucl 72.0 46 0.0016 29.6 12.3 111 58-177 7-125 (285)
279 1zbp_A Hypothetical protein VP 71.1 7.9 0.00027 34.4 6.2 62 466-528 5-66 (273)
280 1oyz_A Hypothetical protein YI 70.5 59 0.002 29.0 19.3 16 222-237 103-118 (280)
281 3kea_A K1L; tropism, ANK repea 68.3 26 0.00089 31.7 9.6 202 35-250 9-218 (285)
282 2wvi_A Mitotic checkpoint seri 67.1 14 0.00047 30.2 6.3 67 488-560 61-129 (164)
283 1n11_A Ankyrin; clathrin, BAND 66.2 78 0.0027 30.6 13.3 107 34-148 23-135 (437)
284 4a1g_A Mitotic checkpoint seri 64.8 13 0.00045 29.8 5.7 80 475-560 52-134 (152)
285 2wpv_A GET4, UPF0363 protein Y 64.2 88 0.003 28.7 24.3 168 359-555 36-216 (312)
286 2qx5_A Nucleoporin NIC96; mRNA 58.3 94 0.0032 32.1 12.1 23 230-252 449-471 (661)
287 3bqo_A Telomeric repeat-bindin 54.9 94 0.0032 26.0 13.8 69 474-543 94-167 (211)
288 3kea_A K1L; tropism, ANK repea 54.1 50 0.0017 29.8 8.7 19 130-148 66-84 (285)
289 4aez_C MAD3, mitotic spindle c 53.2 17 0.00059 31.2 4.8 48 511-558 132-181 (223)
290 2zu6_B Programmed cell death p 51.1 1.5E+02 0.005 27.1 11.4 199 359-558 6-233 (307)
291 2nsz_A Programmed cell death p 50.3 86 0.0029 24.2 9.1 64 359-422 10-78 (129)
292 4gq2_M Nucleoporin NUP120; bet 49.5 1.9E+02 0.0064 31.6 13.6 88 428-521 816-925 (950)
293 3hra_A Ankyrin repeat family p 49.2 98 0.0033 25.6 9.4 152 25-189 8-172 (201)
294 2ion_A PDCD4, programmed cell 48.3 78 0.0027 25.3 7.8 64 359-422 12-80 (152)
295 3eu9_A Huntingtin-interacting 47.4 71 0.0024 27.3 8.5 116 23-150 10-133 (240)
296 1k1a_A B-cell lymphoma 3-encod 46.9 86 0.0029 26.9 8.9 86 60-149 13-102 (241)
297 2r9g_A AAA ATPase, central reg 45.7 1.4E+02 0.0046 25.2 9.6 65 288-353 13-85 (204)
298 3eu9_A Huntingtin-interacting 44.5 1.1E+02 0.0037 26.1 9.2 17 132-148 82-98 (240)
299 3jxi_A Vanilloid receptor-rela 44.0 96 0.0033 27.1 8.9 118 60-178 9-161 (260)
300 2d2s_A Exocyst complex compone 43.4 78 0.0027 27.6 7.6 24 58-81 23-46 (235)
301 3b7b_A Euchromatic histone-lys 40.6 1.6E+02 0.0054 25.1 9.7 13 235-247 218-230 (237)
302 1oyz_A Hypothetical protein YI 39.8 2E+02 0.0068 25.4 19.5 21 220-240 138-158 (280)
303 3esl_A Checkpoint serine/threo 39.8 1.7E+02 0.0058 24.7 10.3 50 302-351 95-145 (202)
304 3ctd_A Putative ATPase, AAA fa 38.7 1.8E+02 0.0062 24.6 8.7 67 286-352 32-106 (213)
305 2d2s_A Exocyst complex compone 37.8 1.7E+02 0.0058 25.5 8.9 87 292-381 24-116 (235)
306 3bge_A Predicted ATPase; struc 37.5 1.6E+02 0.0055 24.6 8.0 46 290-335 8-56 (201)
307 2ion_A PDCD4, programmed cell 36.4 1.6E+02 0.0056 23.4 8.1 24 228-251 13-36 (152)
308 3aji_A 26S proteasome non-ATPa 36.3 1.8E+02 0.0063 24.5 9.3 109 34-151 15-131 (231)
309 1n11_A Ankyrin; clathrin, BAND 34.9 3.1E+02 0.01 26.2 11.6 336 60-422 18-372 (437)
310 2etb_A Transient receptor pote 34.5 2E+02 0.0068 24.9 9.4 90 60-151 6-115 (256)
311 1ya0_A SMG-7 transcript varian 34.3 1.1E+02 0.0037 30.4 7.9 55 499-553 158-212 (497)
312 2ko4_A Mediator of RNA polymer 34.0 68 0.0023 22.0 4.3 38 42-79 23-62 (81)
313 3twr_A Tankyrase-2; ankyrin re 33.4 1.8E+02 0.006 22.9 9.5 118 19-148 5-130 (165)
314 3ljn_A Hypothetical protein; a 33.4 1.4E+02 0.0047 27.8 8.5 97 18-122 16-115 (364)
315 3eiq_C Programmed cell death p 33.1 3.1E+02 0.011 25.7 12.3 228 92-338 58-305 (358)
316 2fu4_A Ferric uptake regulatio 32.9 1.2E+02 0.0041 20.8 6.1 62 77-139 6-68 (83)
317 2nsz_A Programmed cell death p 32.7 1.7E+02 0.0058 22.5 9.5 24 228-251 11-34 (129)
318 1k1a_A B-cell lymphoma 3-encod 32.6 1.6E+02 0.0053 25.1 8.3 138 34-176 18-169 (241)
319 3mv2_A Coatomer subunit alpha; 32.5 3E+02 0.01 25.3 12.4 70 473-556 185-256 (325)
320 4b4t_S RPN3, 26S proteasome re 31.8 1.1E+02 0.0037 30.4 7.3 71 458-528 231-305 (523)
321 3ljn_A Hypothetical protein; a 31.8 2.8E+02 0.0096 25.6 10.5 87 232-319 25-114 (364)
322 3bu8_A Telomeric repeat-bindin 30.7 1.9E+02 0.0064 24.6 7.4 50 438-487 88-143 (235)
323 3ygs_P Procaspase 9; apoptosis 29.7 82 0.0028 22.8 4.7 39 370-408 51-89 (97)
324 3ygs_P Procaspase 9; apoptosis 29.6 43 0.0015 24.3 3.2 37 36-72 51-87 (97)
325 4b4t_S RPN3, 26S proteasome re 29.4 1E+02 0.0035 30.5 6.7 60 423-486 232-298 (523)
326 2fe3_A Peroxide operon regulat 28.9 1.5E+02 0.0051 23.3 6.6 36 336-371 36-71 (145)
327 4gq2_M Nucleoporin NUP120; bet 28.8 3.1E+02 0.011 29.9 11.1 52 129-181 816-867 (950)
328 3b7b_A Euchromatic histone-lys 28.6 2.7E+02 0.0091 23.5 9.5 81 60-148 15-99 (237)
329 2crb_A Nuclear receptor bindin 27.8 71 0.0024 22.8 3.7 27 528-554 16-42 (97)
330 1te4_A Conserved protein MTH18 27.4 1.1E+02 0.0038 23.3 5.6 50 86-139 54-103 (131)
331 3bu8_A Telomeric repeat-bindin 27.1 68 0.0023 27.2 4.2 43 500-542 121-163 (235)
332 2fe3_A Peroxide operon regulat 26.5 1.5E+02 0.005 23.4 6.2 60 413-474 13-72 (145)
333 1ug3_A EIF4GI, eukaryotic prot 26.5 2.1E+02 0.0072 26.5 8.2 27 228-254 15-41 (339)
334 2xig_A Ferric uptake regulatio 24.8 2.2E+02 0.0075 22.5 6.9 37 335-371 40-76 (150)
335 3bqo_A Telomeric repeat-bindin 24.7 3.1E+02 0.011 23.0 9.8 45 372-416 94-146 (211)
336 2xig_A Ferric uptake regulatio 24.1 2E+02 0.0068 22.8 6.6 60 413-474 18-77 (150)
337 2rfa_A Transient receptor pote 23.8 3.2E+02 0.011 22.9 10.8 145 34-186 12-182 (232)
338 4g8k_A 2-5A-dependent ribonucl 22.5 4.3E+02 0.015 23.9 14.5 57 24-88 27-87 (337)
339 4a1g_A Mitotic checkpoint seri 22.2 3E+02 0.01 21.9 9.1 50 305-354 84-134 (152)
340 1bd8_A P19INK4D CDK4/6 inhibit 21.8 93 0.0032 24.3 4.3 19 60-78 6-24 (156)
341 4ets_A Ferric uptake regulatio 21.6 1.7E+02 0.0057 23.6 5.7 70 404-474 14-85 (162)
342 3jxi_A Vanilloid receptor-rela 21.2 1.4E+02 0.0047 26.0 5.7 55 161-216 9-72 (260)
343 1mzb_A Ferric uptake regulatio 20.3 2.4E+02 0.0083 21.7 6.2 60 77-137 7-67 (136)
344 3kae_A CDC27, possible protein 20.3 3.6E+02 0.012 22.1 8.9 77 268-346 46-139 (242)
345 4ets_A Ferric uptake regulatio 20.1 1.8E+02 0.0063 23.4 5.6 59 312-371 24-84 (162)
346 2w57_A Ferric uptake regulatio 20.1 2.7E+02 0.0093 21.9 6.6 62 77-139 6-68 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-43 Score=372.91 Aligned_cols=492 Identities=8% Similarity=-0.041 Sum_probs=273.9
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 677788888888888888999999999999999999999999999985 457888999999999999999999999998
Q ss_pred HHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-------------------CeecHHHHHHHHHcCCChhHHH
Q 007077 114 VVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-------------------DVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 114 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~ 174 (619)
+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+
T Consensus 143 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 864 3578899999999999999999999999965433 3678899999999999999999
Q ss_pred HHHHHhHhcCCCCCCh-hhHHHHHHHhhcCCChHHHH--HH-HHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhcc
Q 007077 175 DVFRRMRQGCNLMPDE-GTVVSTLSACTALKNLELGK--EI-HRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDE 249 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (619)
+.|++|.+ . .|+. ..+..+...+...+..+.+. .+ +..+... ......+++.++..|.+.|++++|.++|++
T Consensus 221 ~~~~~~~~-~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 221 ECYKEALM-V--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHH-H--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHH-h--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999876 2 2433 33333333332222111111 00 2222222 233334455556677777777777777777
Q ss_pred CCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007077 250 MPN--KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL 324 (619)
Q Consensus 250 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 324 (619)
+.+ ++..+|+.++..|.+.|++++|..+|+++. +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 665 455555555555555555555555555442 2244555555555555555555555555554321 2234444
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCC
Q 007077 325 VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNG 401 (619)
Q Consensus 325 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 401 (619)
..+...|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 444455555555555555555444432 22344444444444444444444444444331 23444444444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPK--LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~ 476 (619)
++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 4444444444444431 1223444444444444444444444444443321 22333 3444444444444444444
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
|.+.++++... .+.+..+|..++.+|...|++++|.+.++++.+++|+++.++..++.+
T Consensus 535 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 535 AIDALNQGLLL-STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHH-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44444444311 122233344444444444444444444444444444444444444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-41 Score=358.30 Aligned_cols=482 Identities=12% Similarity=0.013 Sum_probs=402.4
Q ss_pred HHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHH
Q 007077 63 FAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNV 142 (619)
Q Consensus 63 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 142 (619)
+.+.|....+...+..+. .++...|+.++..+.+.|++++|..+++++.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 344555555666655442 357788999999999999999999999999864 46778999999999999999999
Q ss_pred HHHHccCC--CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcC--------------CCCCChhhHHHHHHHhhcCCCh
Q 007077 143 KKLFDEMP--DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGC--------------NLMPDEGTVVSTLSACTALKNL 206 (619)
Q Consensus 143 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~p~~~~~~~ll~~~~~~~~~ 206 (619)
..+|+.+. .+++.+|+.++.+|.+.|++++|+++|+++.... +.+++..+|..++.++.+.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99999984 5788999999999999999999999999543212 2344678999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHH---hccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHc
Q 007077 207 ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAREL---FDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFD 279 (619)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 279 (619)
++|...++.+.+..|.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999988777888888887766655443332211 222222 233456677888999999999999999
Q ss_pred cCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh
Q 007077 280 RSPV--RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAV 357 (619)
Q Consensus 280 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (619)
++.. ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9886 789999999999999999999999999998865 3366789999999999999999999999998764 67889
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 3468899999999999999999999999999873 3467899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CCccc--HHHHHHHHHHHHHcCC
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE----NNEII--VPLYGALLSACRIYGN 508 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~ 508 (619)
.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++... +..|. ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999875 2456889999999999999999999999998632 33444 6789999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++|++.++++.+..|+++.+|..++.+|.+.|++++|.+.++++.+
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-27 Score=239.53 Aligned_cols=372 Identities=14% Similarity=0.111 Sum_probs=300.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPD-EGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC 239 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (619)
...+.+.|++++|.+.+..+.+ ..|+ ...+..+...+...|+++.|...++...+..|.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR---QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 3455677888888888877755 2343 34445555566777888888888888777777788888888888888888
Q ss_pred hhhHHHHhccCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 240 LSEARELFDEMPN--K-NVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 240 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
+++|...|+++.+ | +..+|..+..++.+.|++++|...|+++. +.+...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887754 3 34467778888888888888888877654 3355677888888888999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhH
Q 007077 314 IIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASW 390 (619)
Q Consensus 314 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 390 (619)
+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++... .+..+|
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 753 2345688888888999999999999999988875 55677888899999999999999999987653 367888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+++..++..++..+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 89999999999999999999999987 554 568888889999999999999999998874 3566888999999999
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+.|++++|.+.++++... .+....++..+...+.+.|++++|...++++.++.|+++.+|..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999988743 455566799999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.8e-27 Score=235.51 Aligned_cols=351 Identities=15% Similarity=0.091 Sum_probs=311.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHH
Q 007077 197 LSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 273 (619)
...+...|+++.|...+..+.+..|.+...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34566789999999999999988888899999999999999999999999987764 466789999999999999999
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 007077 274 ARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINE 349 (619)
Q Consensus 274 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (619)
|...|+++. +.+..+|..++.++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998764 446678999999999999999999999999875 4544 4667788888999999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITF 425 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 425 (619)
.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 55678999999999999999999999999863 35778999999999999999999999999886 565 6788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
..+..++...|++++|...|+.+.+. .+.+...|..++.+|.+.|++++|.+.++++... .+.+..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 89999999999999999999999864 2334778999999999999999999999998732 45566679999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.|++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.4e-27 Score=239.36 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHcCCCCChh
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA---------LEQGKWIHGYINENRITVDAV 357 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 357 (619)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 788999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 433 (619)
+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 46999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA 471 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 471 (619)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999998753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.5e-26 Score=233.02 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=175.3
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC---------H
Q 007077 303 DEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL---------I 372 (619)
Q Consensus 303 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 372 (619)
..+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46888999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 373 EKALEIFYELR----EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 373 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY 506 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (619)
.+. |+.||..+|++|+.+|++.|+.++|.++|++|...+..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 987 999999999999999999999999999999999888999999999999888754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.2e-24 Score=219.42 Aligned_cols=425 Identities=9% Similarity=-0.034 Sum_probs=284.7
Q ss_pred hHHHHHHHhHhcCChhHHHHHHccCCC--CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 125 VCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
.+..+...+.+.|++++|...|+++.+ |+..+|..+..++.+.|++++|+..|+.+.+ . .+.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE-L-KPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-c-ChHHHHHHHHHHHHHHH
Confidence 344444555555555555555555542 4555555555555555555555555555544 1 12233445555555555
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC----CCchhHHHH---HHHHHhcCCHHHHH
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN----KNVICWTSM---VSGYVNCGQLEKAR 275 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~A~ 275 (619)
.|+++.|...++.+.+..+.+......++..+.+......+.+.+..+.. ++...+..- ............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 55555555555555554443333333333333333222222222211110 000000000 00000001111111
Q ss_pred HHHccCC----------CCChhhHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHH
Q 007077 276 DLFDRSP----------VRDIVLWTAMINGYVQ---FNRFDEAVALFREMQI-----IRLK--------PDKFILVALLT 329 (619)
Q Consensus 276 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~ll~ 329 (619)
..+.... +.+...+......+.. .|++++|+..|+++.+ ..-. .+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1124455555555554 8999999999999987 3112 23456778888
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHH
Q 007077 330 GCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKA 406 (619)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 406 (619)
.+...|+++.|...+..+.+.... ...+..+..+|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999887633 88889999999999999999999998764 3677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..++..|.+.|++++|.+.++++..
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999873 2245688888999999999999999999998752 34577899999999999999999999988762
Q ss_pred C-CCccc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 487 E-NNEII----VPLYGALLSACRI---YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 487 ~-~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
. +..+. ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1 12221 2358999999999 999999999999999999999999999999999999999999999999874
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.1e-23 Score=212.89 Aligned_cols=367 Identities=12% Similarity=0.053 Sum_probs=271.9
Q ss_pred HhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHH
Q 007077 218 QELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTA 291 (619)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 291 (619)
...|.+...+..++..|.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++. +.+..+|..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 33445556666666777777777777777766543 345566667777777777777777776543 345678888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 007077 292 MINGYVQFNRFDEAVALFREMQIIRLKPDK----FILVAL------------LTGCAQLGALEQGKWIHGYINENRITVD 355 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (619)
++.+|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 888888888888888888888764 3443 333333 445788999999999999998865 567
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHH---
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGV--- 428 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--- 428 (619)
..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+.. .+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 88899999999999999999999998763 47889999999999999999999999999876 56543 34333
Q ss_pred ---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHH
Q 007077 429 ---------LSACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVP 494 (619)
Q Consensus 429 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 494 (619)
...|...|++++|...|+.+... .|+ ..++..++.++.+.|++++|++.++++... .+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~ 330 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHH
Confidence 78889999999999999999875 344 457889999999999999999999987632 334556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH------------HHhCC-----ChHHHHHHHHHH-HhC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI------------YASAN-----RWEDVTNVRQKM-KEM 556 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m-~~~ 556 (619)
+|..++.+|...|++++|...++++.++.|+++.++..++.+ |...| +.+++.+.++++ ...
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999988844 55555 556677777763 332
Q ss_pred CCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccccc
Q 007077 557 GVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNAME 609 (619)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 609 (619)
.+...+.. ...+..++.+..+.+.+..+.+.......
T Consensus 411 ~pd~~~~~----------------~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 411 HPDNFQNE----------------EEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp CGGGCCSH----------------HHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred CCCCCCCc----------------hHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 21111000 00123455667777777777766655443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-23 Score=215.92 Aligned_cols=447 Identities=10% Similarity=-0.050 Sum_probs=290.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhH
Q 007077 55 AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYG 134 (619)
Q Consensus 55 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 134 (619)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+... .+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34555666777777777777777776654 5666677777777777777777777777776542 34456666667777
Q ss_pred hcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 007077 135 VLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKE 211 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 211 (619)
+.|++++|...|+++.. ++......++..+........+.+.+..+.. .+..|+...+...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------- 156 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT-ATATPTELSTQPAKERKDKQE------- 156 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCChhhHHHhhcc-------
Confidence 77777777776665532 2223333333333333323333333322222 111111111110000000000
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHccCCC----
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSMVSGYVN---CGQLEKARDLFDRSPV---- 283 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~---- 283 (619)
..|+.... ..+.......... ..+..| +...+......+.. .|++++|...|+++..
T Consensus 157 --------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 157 --------NLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred --------CCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00000000 0000000000000 000011 11222222222222 4555555555443221
Q ss_pred -------------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 284 -------------RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 284 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.+..+|..+...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...+..+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 135678888899999999999999999998864 44778888899999999999999999998876
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFI 426 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 426 (619)
. +.+..++..+..+|...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+. .| +..++.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHH
Confidence 5 55677889999999999999999999998753 36778999999999999999999999999876 44 456888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGR---AGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
.+...+...|++++|...++.+.....-.++ ...+..++.++.+ .|++++|.+.++++... .+....++..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHH
Confidence 8899999999999999999998765332333 3488999999999 99999999999987732 33445668999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
...+...|++++|...++++.++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999998876655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=204.74 Aligned_cols=421 Identities=10% Similarity=0.021 Sum_probs=319.7
Q ss_pred hhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH
Q 007077 123 TYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA 199 (619)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 199 (619)
...+..+...+.+.|++++|...|+++.+ .++.+|..+..++.+.|++++|++.|+++.+ . .+.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE-I-KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCchHHHHHHHHHH
Confidence 45677788888899999999999888763 3567888888889999999999999998876 2 23456677778888
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC------CchhHHHHHHHHHhcCCHHH
Q 007077 200 CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK------NVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 273 (619)
+...|+++.|...++ .....+ ......+..+...+....|...++.+... ........+..+....+.+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 888899999988885 332211 11222344555566667788888777551 22234555666777788888
Q ss_pred HHHHHccCCCCChh---hHHHHHHHHHH--------cCChhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHcc
Q 007077 274 ARDLFDRSPVRDIV---LWTAMINGYVQ--------FNRFDEAVALFREMQIIRLKPD--------KFILVALLTGCAQL 334 (619)
Q Consensus 274 A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~ 334 (619)
+...+......+.. ....+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88887776655443 33333333322 25889999999998864 343 23466677788899
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
|+++.|...+..+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999874 4578888999999999999999999998763 467889999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 007077 412 QMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN---- 486 (619)
Q Consensus 412 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 486 (619)
++.+. .|+ ..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99987 444 5688888999999999999999999998752 44577899999999999999999999988651
Q ss_pred -CCCcccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 487 -ENNEIIVPLYGALLSACRIY----------GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 487 -~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.........+......+... |++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111212244455667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 007077 556 MG 557 (619)
Q Consensus 556 ~~ 557 (619)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=6.8e-22 Score=206.53 Aligned_cols=433 Identities=12% Similarity=0.012 Sum_probs=318.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMD 131 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 131 (619)
....|..+...+.+.|++++|+..|+++.+.. |.+..++..+..++...|++++|.+.++.+.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34567888889999999999999999998874 44677888899999999999999999999988653 45678888888
Q ss_pred HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc-----CCCCCChhhHHHHHHHhhcCCCh
Q 007077 132 MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG-----CNLMPDEGTVVSTLSACTALKNL 206 (619)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~~~~~ll~~~~~~~~~ 206 (619)
+|...|++++|...|+.+ ..++...+..+..+...+....|...++.+... ....|+
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----------------- 163 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----------------- 163 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC-----------------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch-----------------
Confidence 999999999999988643 222223333344555566667888888887441 011122
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch---hHHHHHHHHHh--------cCCHHHHH
Q 007077 207 ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI---CWTSMVSGYVN--------CGQLEKAR 275 (619)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~ 275 (619)
...+..+....+.+.+...+......+.. ....+...+.. .|++++|.
T Consensus 164 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 164 ---------------------NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ---------------------HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ---------------------HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 12223344445555555555554443222 22222222221 24677777
Q ss_pred HHHccCCCC---C-------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 007077 276 DLFDRSPVR---D-------IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHG 345 (619)
Q Consensus 276 ~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 345 (619)
..|+++... + ..++..+...+...|++++|+..|+++.+. .|+...+..+...+...|+++.|...+.
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777665422 2 225667778888999999999999999885 5667788889999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 007077 346 YINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD- 421 (619)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 421 (619)
.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+. .|+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 998875 56788899999999999999999999998763 36778999999999999999999999999987 444
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHhhCCCC
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRA----------GLLDEAEELIRKIPNE 487 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 487 (619)
..++..+...+...|++++|...|+.+.+...-.++ ...+.....+|.+. |++++|...++++...
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 568888899999999999999999998765321222 23345566778888 9999999999988732
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.+.+..+|..+...+...|++++|...++++.++.|+++....
T Consensus 458 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 458 -DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3445567999999999999999999999999999999887543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.8e-21 Score=198.47 Aligned_cols=346 Identities=11% Similarity=-0.015 Sum_probs=215.8
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDM 233 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 233 (619)
+..|..+...+.+.|++++|+.+|+.+.+ ..+.+...+..+..++...|+++.|...++.+.+..|.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44566666777777777777777777655 2234556666666677777777777777777777666677777788888
Q ss_pred HHhcCChhhHHHHhccCCC--CC-c---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 234 YCKCGCLSEARELFDEMPN--KN-V---ICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
|.+.|++++|.+.|+++.+ |+ . ..|..++..+.. ..+..+...+...|++++|+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877755 22 2 344444333111 112223334555555566666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---
Q 007077 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--- 384 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 384 (619)
.|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 655555432 2234455555555555566666655555555442 34455566666666666666666666665542
Q ss_pred CChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 385 KDAASWTSI------------ICGLAMNGKINKALELFSQMISGGAKPD-----DITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 385 ~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
.+...+..+ +..+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|...++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 123333333 67778888888888888888775 454 23567777788888888888888888
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH------------HHHcC-----CHH
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA------------CRIYG-----NVD 510 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~ 510 (619)
+... .+.+...|..++.+|...|++++|.+.++++... .+.+..++..+..+ |...| +.+
T Consensus 321 a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 321 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 7754 1335677888888888888888888888877632 33334445555532 23333 566
Q ss_pred HHHHHHHH-HhccCCCCc
Q 007077 511 MGEKLAAL-LEKIESKDS 527 (619)
Q Consensus 511 ~a~~~~~~-~~~~~p~~~ 527 (619)
++.+.+++ +.+..|++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 77888876 667777643
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.7e-19 Score=177.71 Aligned_cols=322 Identities=10% Similarity=0.010 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChh
Q 007077 224 PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFD 303 (619)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 303 (619)
+..+..+...+.+.|++++|...|+++.+. .+.+..+|..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------DPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------CcccHHHHHHHHHHHHHccCHH
Confidence 344555666666666666666666655330 1223344444444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC---CChhHHHH------------HHHHHHh
Q 007077 304 EAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT---VDAVVATA------------LIEMYAK 368 (619)
Q Consensus 304 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~------------l~~~~~~ 368 (619)
+|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. + .+...+.. +...+..
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444321 1123344444444444445555544444444432 1 12222222 3567888
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
.|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887653 366778888888888888888888888888762 334567788888888888899888888
Q ss_pred HHhHHhcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHhhCCC-CCCcccH--HHHHHHHHHHHHcCCHH
Q 007077 446 NTMTEVYQIQPKLEHYG------------CLIDLLGRAGLLDEAEELIRKIPN-ENNEIIV--PLYGALLSACRIYGNVD 510 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~~~~~g~~~ 510 (619)
+...+.. +.+...+. .++..+.+.|++++|.+.++++.. .|..+.. ..+..+...+...|+++
T Consensus 212 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 8887642 22233222 336678899999999999988763 2222221 23556778899999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIY 590 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+|...++++.+..|+++.++..++.+|...|++++|.+.++++.+ .+|....+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 343 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHH
Confidence 999999999999999999999999999999999999999999886 256667778
Q ss_pred HHHHHHHHHHHHhc
Q 007077 591 SMLDRMAKTLLDSK 604 (619)
Q Consensus 591 ~~l~~~~~~~~~~~ 604 (619)
..+.++...++++.
T Consensus 344 ~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 344 EGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.6e-19 Score=176.35 Aligned_cols=314 Identities=12% Similarity=-0.017 Sum_probs=244.1
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhc
Q 007077 189 DEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNC 268 (619)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 268 (619)
|...+..+...+...|+++.|...++.+.+..|.++.++..+...+...|++++|...|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34567777888999999999999999999998889999999999999999999999988775430
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---C-HHHHHHH------------HHHHH
Q 007077 269 GQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP---D-KFILVAL------------LTGCA 332 (619)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~-~~~~~~l------------l~~~~ 332 (619)
.+.+...|..+...+...|++++|+..|+++.+. .| + ...+..+ ...+.
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455666666666666666666666666553 33 2 2222222 46677
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
..|++++|...+..+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888887764 55677888888899999999999999988764 3677888899999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhc
Q 007077 410 FSQMISGGAKPDD-ITFI------------GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-L----EHYGCLIDLLGRA 471 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~ 471 (619)
|++..+. .|+. ..+. .+...+...|++++|...++.+.... |+ . ..+..+..++.+.
T Consensus 211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHc
Confidence 9998876 4443 2222 23566888999999999999998753 43 2 3355688899999
Q ss_pred CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 472 GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
|++++|.+.+++.... .+.+..+|..+...+...|++++|...++++.+++|+++.++..+..++..
T Consensus 286 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999988732 444566799999999999999999999999999999999988888876554
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=4.7e-19 Score=170.89 Aligned_cols=285 Identities=14% Similarity=0.122 Sum_probs=105.5
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 899999999999999999999975 25788999999999999999999998888
Q ss_pred HHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhH
Q 007077 114 VVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTV 193 (619)
Q Consensus 114 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 193 (619)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+. .|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------CH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hH
Confidence 7774 45678899999999999999999988864 677799999999999999999999999762 33
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHH
Q 007077 194 VSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (619)
..+++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.
T Consensus 152 ----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 152 ----------------------------------GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------------HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHH
Confidence 55666666666666666666666 255666666666666666666
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 007077 274 ARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ--LGALEQGKWIHGYINENR 351 (619)
Q Consensus 274 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 351 (619)
|......+. .++.....++..|.+.|++++|+.+++...... +-....|+-+.-++++ .+++.+..+.|.. +.+
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~in 271 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVN 271 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSC
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hhc
Confidence 655555433 333334457777777777777777777765432 2233344444444432 2333333333321 112
Q ss_pred CCC------ChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 352 ITV------DAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 352 ~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+++ +...|..++-.|...++++.|....-+
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 222 355677777777777887777665443
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=7.9e-16 Score=165.33 Aligned_cols=482 Identities=12% Similarity=0.116 Sum_probs=335.3
Q ss_pred HHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCC---
Q 007077 9 AQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVS--- 85 (619)
Q Consensus 9 ~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--- 85 (619)
...+..| ..++.++|+|...|. ..++ .+++.+..-+ .-=..++.-||...|+..|.-.|++ |..
T Consensus 863 E~~~~~g-~~~~~~hnalakiyi--d~n~--npe~fL~~n~----~yd~~~vgkyce~rDp~la~iay~~----g~~d~e 929 (1630)
T 1xi4_A 863 EARIHEG-CEEPATHNALAKIYI--DSNN--NPERFLRENP----YYDSRVVGKYCEKRDPHLACVAYER----GQCDLE 929 (1630)
T ss_pred HHHHhCC-CCCHHHHHHHHHHHh--ccCC--CHHHHhhccC----cccHHHHHHHHHhcCcchHHHHhcc----cCCcHH
Confidence 3334444 468889999999998 4332 3334443322 1112345555655565555555543 211
Q ss_pred -----CCcccHHHHHHHHhccCChhH-----------HHHHHHHHHHhCC--CCChhhHHHHHHHhHhcCChhHHHHHHc
Q 007077 86 -----PDNFTYPFVFKAVGWLGEVKK-----------GEKVHGYVVKTGL--EFDTYVCNSIMDMYGVLGKICNVKKLFD 147 (619)
Q Consensus 86 -----p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 147 (619)
-....|....+-+.+..+.+. =+++.++.....+ ..++.-....+..|...|...+|.++++
T Consensus 930 li~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLE 1009 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLE 1009 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHH
Confidence 111123333333333322221 1233333333222 1233344566778888899999999988
Q ss_pred cCCC-CC-----eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 007077 148 EMPD-KD-----VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELE 221 (619)
Q Consensus 148 ~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 221 (619)
+..- ++ ...-+.++.+..+. +..+..+..+.... .....+...|...|.+++|..+++....
T Consensus 1010 Kivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~~--- 1077 (1630)
T 1xi4_A 1010 KIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFDV--- 1077 (1630)
T ss_pred HHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcCC---
Confidence 8762 22 23455566666666 45666666655532 1234466778889999999999988531
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCC
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNR 301 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 301 (619)
.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. .|...|..++.++.+.|+
T Consensus 1078 -~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1078 -NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred -HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCC
Confidence 11112222 337888999999998774 4667889999999999999999999775 677888899999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 302 FDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 999999999877754 33333445888899999888644442 2 34566777899999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 007077 382 LREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY 461 (619)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 461 (619)
+ ..|..++.+|.+.|++++|++.+++. .+..+|..+..+|...|++..|......+ ..+...+
T Consensus 1221 A-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deL 1283 (1630)
T 1xi4_A 1221 V-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADEL 1283 (1630)
T ss_pred h-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHH
Confidence 5 58999999999999999999999976 35588999999999999999998876532 3455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCC-----CCcchHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI--YGNVDMGEKLAALLEKIES-----KDSSFHTLLA 534 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~ 534 (619)
..++..|.+.|.+++|+.+++....- ++.....|+-+...+.+ -++..++.+.|..-..+.| .+.+.|..++
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L-eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc-ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 89999999999999999999888733 34555567666666655 4577788888887777766 7888899999
Q ss_pred HHHHhCCChHHHHHHH
Q 007077 535 NIYASANRWEDVTNVR 550 (619)
Q Consensus 535 ~~~~~~g~~~~A~~~~ 550 (619)
.+|.+.|+|+.|....
T Consensus 1363 ~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHhcccHHHHHHHH
Confidence 9999999999998533
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=5e-18 Score=165.03 Aligned_cols=255 Identities=13% Similarity=0.052 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALI 363 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (619)
+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...+..+.+.. +.+...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 44556666677777777777777777776643 224456666777777777 7777777777777654 44566777888
Q ss_pred HHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 364 EMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
.+|...|++++|...|+++.+ .+...+..+...|...|++++|...+++..+. .|+ ..++..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHH
Confidence 888888888888888887653 34567777888888888888888888888876 444 567788888888889999
Q ss_pred HHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 440 EGRRFFNTMTEVYQ-------IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 440 ~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
+|...++.+..... .+.....+..+..+|.+.|++++|.+.+++.... .+.+...|..+...+...|++++|
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHH
Confidence 99888888876421 1334568888899999999999999999887622 223445588888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHH-hCCChH
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYA-SANRWE 544 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 544 (619)
...++++.++.|+++.++..++.++. ..|+.+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999988889988884 455543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.9e-19 Score=173.30 Aligned_cols=279 Identities=14% Similarity=0.006 Sum_probs=211.6
Q ss_pred cCCHHHHHH-HHccCC---CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 007077 268 CGQLEKARD-LFDRSP---VR----DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQ 339 (619)
Q Consensus 268 ~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 339 (619)
.|++++|.. .|++.. +. +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 555332 11 34557777777888888888888888877653 3355577777777888888888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHH---------------HHHHHHhCC
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTS---------------IICGLAMNG 401 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~~~g 401 (619)
|...+..+.+.. +.+..++..+..+|...|++++|...|+++... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888888777765 556777778888888888888888888876532 2222211 133334889
Q ss_pred ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007077 402 KINKALELFSQMISGGAKPD---DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (619)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+... .+.+...+..++.+|.+.|++++|.
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987 444 678889999999999999999999999875 2345788999999999999999999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhCCChHHHH
Q 007077 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD-----------SSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 547 (619)
+.++++... .+....++..+...+...|++++|...++++.++.|++ ..+|..++.+|...|++++|.
T Consensus 272 ~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999988632 34455679999999999999999999999999999887 788999999999999999999
Q ss_pred HHHHHH
Q 007077 548 NVRQKM 553 (619)
Q Consensus 548 ~~~~~m 553 (619)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887743
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-17 Score=161.77 Aligned_cols=267 Identities=10% Similarity=0.031 Sum_probs=228.9
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466778888999999999999999999998754 2334466677788899999999999999998875 5677889999
Q ss_pred HHHHHhCC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 363 IEMYAKCG-LIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 363 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999998764 35778999999999999999999999999987 444 4677778899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C----CcccHHHHHHHHHHHHHcCCH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE----N----NEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~~~~l~~~~~~~g~~ 509 (619)
+++|...++.+.+. .+.+...+..++..+.+.|++++|.+.++++... + .+....+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999863 3445788999999999999999999999876521 1 133345699999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998765
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2e-19 Score=173.49 Aligned_cols=285 Identities=11% Similarity=0.139 Sum_probs=143.4
Q ss_pred HhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007077 235 CKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
-+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|+.+++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37788999999999996654 8999999999999999999999764 5777999999999999999999998877766
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHH
Q 007077 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSII 394 (619)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 394 (619)
. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+.+.|...|++++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4557788899999999999999888774 367779999999999999999999999987 5899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 26789999999999999999996654432 23344456799999999999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhCCChHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIY--GNVDMGEKLAALLEKIES-----KDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
++|+.+++..... ++....+|+-+.-++++. ++..+.++.|..-..+.| .+.+.|..++.+|...|+|+.|.
T Consensus 224 eEai~lLe~aL~l-e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999988743 355666788887777664 567777777777777777 78899999999999999999997
Q ss_pred HHH
Q 007077 548 NVR 550 (619)
Q Consensus 548 ~~~ 550 (619)
...
T Consensus 303 ~tm 305 (449)
T 1b89_A 303 ITM 305 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=3e-16 Score=161.24 Aligned_cols=364 Identities=11% Similarity=0.003 Sum_probs=254.0
Q ss_pred ChhhHHHHHHHhHh----cCChhHHHHHHccCCC-CCeecHHHHHHHHHc----CCChhHHHHHHHHhHhcCCCCCChhh
Q 007077 122 DTYVCNSIMDMYGV----LGKICNVKKLFDEMPD-KDVVSWNVSISGHVK----CMRFEDAVDVFRRMRQGCNLMPDEGT 192 (619)
Q Consensus 122 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~ 192 (619)
+...+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|+..|++..+ .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~------- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG------- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT-------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC-------
Confidence 44555555555655 5666666666655432 244455555555555 5555556555555544 22
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCChhhHHHHhccCCC-CCchhHHHHHHHHHh
Q 007077 193 VVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCK----CGCLSEARELFDEMPN-KNVICWTSMVSGYVN 267 (619)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 267 (619)
++..+..|...|.. .+++++|.+.|++..+ .+...+..+...|..
T Consensus 110 ------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 110 ------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE 159 (490)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 23333444444444 4455555555544433 233344445555544
Q ss_pred ----cCCHHHHHHHHccCC-CCChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c
Q 007077 268 ----CGQLEKARDLFDRSP-VRDIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----L 334 (619)
Q Consensus 268 ----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 334 (619)
.++.++|...|++.. ..+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 556666666665433 2366777888888887 789999999999888765 45566666666665 7
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhC-----CChH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAK----CGLIEKALEIFYELREK-DAASWTSIICGLAMN-----GKIN 404 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~ 404 (619)
++.++|...++...+.+ +...+..+..+|.. .++.++|...|++..+. +...+..+...|... ++++
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 88999999999888764 45667777888887 89999999999987654 677888888888887 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEA 477 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 477 (619)
+|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..+...|.. .+++++|
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 3456666666776656 889999999998874 467788889999988 8999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESK---DSSFHTLLANIYAS 539 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 539 (619)
.+.|++....++ ...+..+...|.. .+++++|...|+++.+.+|+ ++.+...++.++..
T Consensus 387 ~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 387 AIWMRKAAEQGL---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999875543 3448888888888 89999999999999999854 66666667666554
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=8.9e-15 Score=157.33 Aligned_cols=353 Identities=12% Similarity=0.063 Sum_probs=272.8
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCC--CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCN--LMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNAL 230 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 230 (619)
|+.--...+.+|...|.+.+|++++++... .+ +.-+...-+.++.+..+. +..........+.... ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 333445677888899999999999999864 21 112223344455444444 5555555555544212 3447
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHH
Q 007077 231 LDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFR 310 (619)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 310 (619)
...+...|.+++|..+|++.... ....+.+ +...+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 78889999999999999997521 1112222 227889999999999774 46788999999999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhH
Q 007077 311 EMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASW 390 (619)
Q Consensus 311 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (619)
+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 466778889999999999999999999888765 44444556999999999999655443 45577788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhh
Confidence 88999999999999999999985 37899999999999999999998765 345799999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC--CChHHHHH
Q 007077 471 AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA--NRWEDVTN 548 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 548 (619)
.|++..|......+.. ....+..++..|.+.|.+++|+.+++...+++|.+...+..|+.+|.+. ++..++.+
T Consensus 1263 ~~Ef~LA~~cgl~Iiv-----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhHHHHHHHHHHhhhc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999998765432 2233778999999999999999999999999999999998888888775 45555555
Q ss_pred HHH
Q 007077 549 VRQ 551 (619)
Q Consensus 549 ~~~ 551 (619)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.1e-18 Score=168.29 Aligned_cols=263 Identities=11% Similarity=-0.040 Sum_probs=211.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888899999999999999888753 3456688888888899999999999999888865 556788888999
Q ss_pred HHHhCCCHHHHHHHHHhcCCCC---h----------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 007077 365 MYAKCGLIEKALEIFYELREKD---A----------ASWTSIICGLAMNGKINKALELFSQMISGGAK-PDDITFIGVLS 430 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~---~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 430 (619)
+|...|++++|...|+++.+.+ . ..+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876432 2 22344578899999999999999999987321 14678899999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|++++|...|+.+.+. .+.+..+|..++.+|.+.|++++|++.|+++... .+.+..+|..+...|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 2445789999999999999999999999988732 3444667999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 511 MGEKLAALLEKIESK------------DSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+|...++++.++.|+ +..+|..++.++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988877 367789999999999999998877665
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.4e-16 Score=162.57 Aligned_cols=416 Identities=9% Similarity=0.031 Sum_probs=279.9
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 111 HGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
++..++.. +-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... ..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KV 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC
Confidence 34444433 346778888888 4788999999999998875 3 455788999999999999999999999966 34
Q ss_pred CChhhHHHHHHHh-hcCCChHHHHH----HHHHHHHhc---cCChhHHHHHHHHHHh---------cCChhhHHHHhccC
Q 007077 188 PDEGTVVSTLSAC-TALKNLELGKE----IHRYINQEL---EFTPIMGNALLDMYCK---------CGCLSEARELFDEM 250 (619)
Q Consensus 188 p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~~---~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 250 (619)
|+...|...+... ...|+.+.|.+ +++.....+ +.+...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7776666666432 34566666654 666666542 3456677777776654 67888888888877
Q ss_pred CC-CCc---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH------HcC---C
Q 007077 251 PN-KNV---ICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQ------IIR---L 317 (619)
Q Consensus 251 ~~-~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~ 317 (619)
.+ |.. ..|..........|. ..+..++ . .+.+++..|..++++.. +.. +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l---------------~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMI---------------E--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHH---------------H--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHH---------------H--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 65 221 122221111000000 0011111 0 12344566666655421 111 2
Q ss_pred CCCH--------HHHHHHHHHHHc----cCcH----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------CCCHH-
Q 007077 318 KPDK--------FILVALLTGCAQ----LGAL----EQGKWIHGYINENRITVDAVVATALIEMYAK-------CGLIE- 373 (619)
Q Consensus 318 ~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 373 (619)
+|+. ..|...+..... .++. +.+..++++++... +.++.+|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 3431 233333322221 1222 36667788777753 5677888888887775 68876
Q ss_pred ------HHHHHHHhcCC---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHH
Q 007077 374 ------KALEIFYELRE---K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 374 ------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a 441 (619)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++++. .|+. ..|...+..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999998764 2 5778888999999999999999999999886 6653 4788888888888999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 442 RRFFNTMTEVYQIQPK-LEHYGCLIDL-LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..+|+...+. +|+ ...|...+.. +...|++++|..+|++.... .+.+...|..++..+.+.|+.++|..+|+++
T Consensus 376 ~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 376 RMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999998753 333 3333332222 34689999999999877632 2334556888998888999999999999999
Q ss_pred hccCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 520 EKIESKDSS----FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 520 ~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....|.++. +|...+......|+.+.+..+.+++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888776654 6777788888889999999999888753
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=6.3e-17 Score=153.23 Aligned_cols=270 Identities=10% Similarity=0.042 Sum_probs=200.3
Q ss_pred HHhcCCHHHHHHHHccCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 007077 265 YVNCGQLEKARDLFDRSPVRDI----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQG 340 (619)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 340 (619)
....|++..|+..+++....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345566666666554433221 2334456677777777777765543 1345556677777777777777777
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007077 341 KWIHGYINENRI-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 341 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
.+.++.+...+. +.+...+..+...|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777776653 44566677788889999999999999998 567889999999999999999999999999987 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 420 PDDITF---IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 420 p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. .++.+..++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-KDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 664311 12334445669999999999999985 356788999999999999999999999999773 244455669
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 497 GALLSACRIYGNVDM-GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..++..+...|+.++ +.++++++.++.|+++.+. +...+.+.++++..-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 999999999999876 6789999999999998743 445566666666543
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=4.3e-16 Score=161.81 Aligned_cols=423 Identities=10% Similarity=0.015 Sum_probs=294.3
Q ss_pred HHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CC
Q 007077 76 FSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KD 153 (619)
Q Consensus 76 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 153 (619)
|++..+.. |-+...|..++.. .+.|+++.|..+++++.+. .+.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44544442 3466788888884 7789999999999999974 345667899999999999999999999999875 66
Q ss_pred eecHHHHHHHH-HcCCChhHHHH----HHHHhHhcCCCCCC-hhhHHHHHHHhhc---------CCChHHHHHHHHHHHH
Q 007077 154 VVSWNVSISGH-VKCMRFEDAVD----VFRRMRQGCNLMPD-EGTVVSTLSACTA---------LKNLELGKEIHRYINQ 218 (619)
Q Consensus 154 ~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 218 (619)
+..|...+... ...|+.++|.+ +|+......|..|+ ...|...+..... .|+++.|..+++.+++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66777766533 35688877765 77776553565554 4456666555443 6788999999999888
Q ss_pred hccCCh--hHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHH----------HHccC---CC
Q 007077 219 ELEFTP--IMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARD----------LFDRS---PV 283 (619)
Q Consensus 219 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----------~~~~~---~~ 283 (619)
.|.+. ..|..........|. ..+..++.. +.++++.|.. .+++. .+
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred -chhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 33322 333333222111111 111121111 1122333333 23321 12
Q ss_pred CC--------hhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCcHH--
Q 007077 284 RD--------IVLWTAMINGYVQF----NRF----DEAVALFREMQIIRLKPDKFILVALLTGCAQ-------LGALE-- 338 (619)
Q Consensus 284 ~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-- 338 (619)
|+ ...|...+...... ++. .++..+|+++.... +-+...|......+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 22 24555555433222 232 47788999887742 3355567666666664 68876
Q ss_pred -----HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHhCCChHHHHHH
Q 007077 339 -----QGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--K-DA-ASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 339 -----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
.|..+++...+.-.+.+..++..++..+.+.|++++|..+|+++.+ + +. ..|..++..+.+.|+.++|.++
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999988743456788999999999999999999999998764 3 33 4799999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007077 410 FSQMISGGAKPD-DITFIGVLSA-CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE 487 (619)
Q Consensus 410 ~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 487 (619)
|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 379 ~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 379 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999986 443 2333332222 335899999999999998753 345789999999999999999999999988743
Q ss_pred -CCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 488 -NNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 488 -~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+..| ....|...+......|+.+.+..+.+++.+..|+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3332 3447888898889999999999999999998885
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=9.8e-16 Score=157.45 Aligned_cols=336 Identities=12% Similarity=-0.020 Sum_probs=278.3
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCChhhHHHHhccCCC-CCchhHHHHHHHHHh----cCCHHH
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCK----CGCLSEARELFDEMPN-KNVICWTSMVSGYVN----CGQLEK 273 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~ 273 (619)
.++++.|...++...+. .++..+..|...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 56667777777666554 456677788888888 8999999999988765 466678888888888 889999
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHH
Q 007077 274 ARDLFDRSPV-RDIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIH 344 (619)
Q Consensus 274 A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 344 (619)
|...|++... .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+
T Consensus 134 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 9999987653 367788889988987 789999999999998865 56677778888877 89999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 007077 345 GYINENRITVDAVVATALIEMYAK----CGLIEKALEIFYELRE-KDAASWTSIICGLAM----NGKINKALELFSQMIS 415 (619)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 415 (619)
+...+.+ ++..+..+..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 9998875 56778888888886 8999999999998765 467788888888888 8999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCC
Q 007077 416 GGAKPDDITFIGVLSACSHG-----GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG---LLDEAEELIRKIPNE 487 (619)
Q Consensus 416 ~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 487 (619)
.| +...+..+...+... ++.++|..+|+...+. .+...+..+...|...| ++++|++.|++....
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 75 345666677777766 8999999999998874 34567888888888767 899999999998855
Q ss_pred CCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 007077 488 NNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 558 (619)
++ ...+..+...|.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++|..++++..+.+.
T Consensus 361 ~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 361 GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44 3448899999988 899999999999998754 67789999999999 8999999999999988763
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.1e-17 Score=165.39 Aligned_cols=293 Identities=11% Similarity=-0.006 Sum_probs=226.6
Q ss_pred HHHcCChhHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 296 YVQFNRFDEAVA-LFREMQIIRL-KP--DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 296 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...+..+.+.. +.+..++..+..+|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8886654321 11 34467788889999999999999999999875 6678899999999999999
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 007077 372 IEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIG---------------VLSAC 432 (619)
Q Consensus 372 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~---------------ll~~~ 432 (619)
+++|...|+++.+ .+..+|..+...|...|++++|+..|+++... .|+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998763 47889999999999999999999999999987 44432 2211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
...|++++|...++.+.+.....++..++..++.+|.+.|++++|++.++++... .+.+..+|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4889999999999999876322225789999999999999999999999987732 334456799999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHH
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSM 592 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (619)
+..++++.++.|+++.++..++.+|.+.|++++|.+.++++.+..... ... ....+|....++..
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-------------~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGP-------------RGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCc-------------cccccchhhHHHHH
Confidence 999999999999999999999999999999999999999997642211 000 01136777889999
Q ss_pred HHHHHHHHHHhcccc
Q 007077 593 LDRMAKTLLDSKQNA 607 (619)
Q Consensus 593 l~~~~~~~~~~~~~~ 607 (619)
+..++..+.+..+..
T Consensus 336 l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 336 LRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHTCGGGHH
T ss_pred HHHHHHHhCChHhHH
Confidence 999998887766553
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=5.5e-17 Score=157.40 Aligned_cols=263 Identities=11% Similarity=-0.068 Sum_probs=203.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456666777777777777777777776643 2345566667777777777777777777777654 4566677777777
Q ss_pred HHhCCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREK---DAASWTSI--------------IC-GLAMNGKINKALELFSQMISGGAKPDDITFIG 427 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 427 (619)
|...|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 88888888888887776532 23333333 22 3777889999999999998873 235678888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
+...+...|++++|...++.+... .+.+...+..++..|...|++++|.+.++++... .+.+..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999875 2345788999999999999999999999987632 3344556999999999999
Q ss_pred CHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESK------------DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
++++|...++++.+..|+ ++.++..++.+|...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999 78889999999999999999999887543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.1e-16 Score=151.47 Aligned_cols=249 Identities=8% Similarity=-0.009 Sum_probs=204.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 007077 293 INGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCG 370 (619)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (619)
+.-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999987644 34443 3556678899999999999876643 24667778889999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 371 LIEKALEIFYELRE----K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 371 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+.++|++.++++.. | +...+..+...+.+.|++++|++.+++ ..+..++..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 567788888999999999999999987 456678888999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 446 NTMTEVYQIQPKLEH---YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
+.+.+. .|+... ...++..+...|++++|..+|+++... .+.+..+|+.+..++...|++++|+..++++.+.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999875 365321 123345555669999999999998843 5556777999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhCCChHH-HHHHHHHHHhCC
Q 007077 523 ESKDSSFHTLLANIYASANRWED-VTNVRQKMKEMG 557 (619)
Q Consensus 523 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 557 (619)
+|+++.++..++.++...|++++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999987 578999888743
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.7e-16 Score=158.69 Aligned_cols=358 Identities=13% Similarity=0.015 Sum_probs=194.4
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhc----CC--CCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHh---c---
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQG----CN--LMP-DEGTVVSTLSACTALKNLELGKEIHRYINQE---L--- 220 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--- 220 (619)
...||.+...+...|++++|++.|++..+. .+ ..| ...+|..+..++...|++++|...++.+.+. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888777765330 00 111 2234445555555555555555555444332 0
Q ss_pred --cCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHH
Q 007077 221 --EFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMING 295 (619)
Q Consensus 221 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 295 (619)
+..+.++..+..++.+.| .+++++|...|++.. +.++..+..+..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~-----------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCG-----------------------------GNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHC-----------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHc-----------------------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 011122222222222221 223455555554432 2234444444333
Q ss_pred ---HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 296 ---YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 296 ---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
+...++.++|++.+++..+.. +.+...+..+...+.. .++.++|...++...+.. +.+..++..+...|..
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 233456666666666665532 1223334333333332 345566666666665553 4455566666777777
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCC-HHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAM-------------------NGKINKALELFSQMISGGAKPD-DITF 425 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~-~~~~ 425 (619)
.|++++|...|++..+ .+..++..+...|.. .+.+++|...|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 7777777777766542 234455555444432 23356788888887765 444 4577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHH-HHhcCCHHHHHHHHhhCCC-CCCcccHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE----HYGCLIDL-LGRAGLLDEAEELIRKIPN-ENNEIIVPLYGAL 499 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l 499 (619)
..+...+...|++++|...|++.... .|+.. .+..+... +...|++++|++.|++... .|.... +
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---~--- 408 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---K--- 408 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---H---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---H---
Confidence 78888889999999999999988754 33322 23333332 3467899999999887652 222211 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
.+....+.+++++..+.+|+++.+|..++.+|...|++++|.+.+++..+.+..
T Consensus 409 ------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 ------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred ------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 222345567788888999999999999999999999999999999999876544
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.4e-16 Score=157.35 Aligned_cols=233 Identities=9% Similarity=-0.076 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 007077 320 DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICG 396 (619)
Q Consensus 320 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 396 (619)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 66788999999999999999999999998763 468899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDI-----------TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+++++.......++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999886 45432 223347788999999999999999987633223688999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
..|.+.|++++|++.++++... .+.+..+|..+..+|...|++++|+..++++.++.|+++.++..++.+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988732 344566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 007077 546 VTNVRQKMKEM 556 (619)
Q Consensus 546 A~~~~~~m~~~ 556 (619)
|.+.++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.9e-15 Score=151.16 Aligned_cols=382 Identities=10% Similarity=-0.014 Sum_probs=192.9
Q ss_pred cccHHHHHHHHhccCChhHHHHHHHHHHHh-----C--CCC-ChhhHHHHHHHhHhcCChhHHHHHHccCCC-------C
Q 007077 88 NFTYPFVFKAVGWLGEVKKGEKVHGYVVKT-----G--LEF-DTYVCNSIMDMYGVLGKICNVKKLFDEMPD-------K 152 (619)
Q Consensus 88 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 152 (619)
...|+.+...+...|+.++|.+.+++..+. + ..| ...+|+.+..+|...|++++|...+++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344666666666666666666666655432 0 112 234566666667677777666665544321 0
Q ss_pred ----CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 007077 153 ----DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGN 228 (619)
Q Consensus 153 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (619)
...++..+..++... ..+++++|...|+.+.+..|.++..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~----------------------------------~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKC----------------------------------GGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHH----------------------------------CTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH----------------------------------ccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 111222222222221 123344444444444444444444444
Q ss_pred HHHHHH---HhcCChhhHHHHhccCCC---CCchhHHHHHHHHH----hcCCHHHHHHHHccC---CCCChhhHHHHHHH
Q 007077 229 ALLDMY---CKCGCLSEARELFDEMPN---KNVICWTSMVSGYV----NCGQLEKARDLFDRS---PVRDIVLWTAMING 295 (619)
Q Consensus 229 ~l~~~~---~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~----~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 295 (619)
.+..++ ...++.++|++.|++..+ .+...+..+...+. ..|++++|...+++. .+.+..++..+...
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 433332 233444555555544332 22233333333332 234555666666543 34466778888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
|...|++++|+..|++..+. .|+ ...+..+..++...+....+ .. ...........+..+.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHH
Confidence 88999999999999888774 343 34555554444321111100 00 0001111112233567
Q ss_pred HHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHh
Q 007077 375 ALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLS-ACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 375 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~ 448 (619)
|...|++.. ..+..++..+...|...|++++|++.|++.++....|... .+..+.. .....|+.++|+..|++.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777654 3467789999999999999999999999999874333321 2233332 335789999999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+ +.|+........ ..+.+++++.. ..++.+..+|..+...+...|++++|++.|++++++.|.+|.
T Consensus 399 l~---i~~~~~~~~~~~---------~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 399 VK---INQKSREKEKMK---------DKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HH---SCCCCHHHHHHH---------HHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred Hh---cCcccHHHHHHH---------HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 75 356643332222 23334444333 113334446999999999999999999999999999999888
Q ss_pred hHHHHH
Q 007077 529 FHTLLA 534 (619)
Q Consensus 529 ~~~~l~ 534 (619)
+...++
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 665554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.7e-15 Score=146.78 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLA 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 398 (619)
..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345667778899999999999999998875 56788889999999999999999999998763 36788999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 007077 399 MNGKINKALELFSQMISGGAKPDDI-TFIGV--------------LS-ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG 462 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 462 (619)
..|++++|...++++.+. .|+.. .+..+ .. .+...|++++|...++.+.+. .+.+...+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 176 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHA 176 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999987 44433 22222 22 377889999999999999875 244678899
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
.++..|.+.|++++|.+.++++... .+.+..+|..+...+...|++++|...++++.+..|+++.++..++.+|...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987732 334456699999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 543 WEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 543 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+++|.+.++++.+....... . .+.........++..+..++..+.+..+..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~-~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTT-P-------------TGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-------------------CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccc-c-------------cccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999998764322110 0 000012225667777888877776655443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.1e-15 Score=138.66 Aligned_cols=215 Identities=8% Similarity=-0.070 Sum_probs=153.2
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C-------hhhHHHHHHHH
Q 007077 328 LTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---D-------AASWTSIICGL 397 (619)
Q Consensus 328 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~l~~~~ 397 (619)
...+...|++++|...+..+.+.. .+..++..+..+|...|++++|...|+++.+. + ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333333444444444444443333 33444455555555555555555555544321 1 45677777888
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 398 AMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
...|++++|+..|++.... .|+. ..+...|++++|...++.+... .+.+...+..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888888775 4553 3355567888899888888753 233466788888889999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.+.++++... .+.+..+|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 159 ~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999887632 33345668899999999999999999999999999999999999999999999999999999998763
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.5e-15 Score=137.22 Aligned_cols=195 Identities=15% Similarity=0.052 Sum_probs=156.8
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGV 428 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 428 (619)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888899999999999999998764 36778888999999999999999999999887 565 5678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 429 LSACSHG-----------GLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 429 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
...+... |++++|...+++..+. .| +...+..+..+|...|++++|++.|++..... .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 8888888 9999999999999875 34 47788999999999999999999999987433 556679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
..+..++...|++++|+..++++.++.|+++.++..++.++...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888653
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.8e-17 Score=170.09 Aligned_cols=147 Identities=15% Similarity=0.212 Sum_probs=126.7
Q ss_pred hhHHHHHHHHhccCCCCChhHHHHhhccCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 20 PETLNKLMVFCTHPSHGNLLYAEKIFGSIQ-------SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
..+||+||.+|+ +.|++++|.++|++|. .||+++||+||++|++.|++++|.++|++|.+.|+.||..||+
T Consensus 127 ~~TynaLIdglc--K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCL--LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 468999999999 9999999999997653 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-hHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-----CCeecHHHHHHHHHc
Q 007077 93 FVFKAVGWLGEV-KKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-----KDVVSWNVSISGHVK 166 (619)
Q Consensus 93 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 166 (619)
++|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 78999999999999999999999999888887666666666555542 123345556666666
Q ss_pred CC
Q 007077 167 CM 168 (619)
Q Consensus 167 ~g 168 (619)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.2e-15 Score=138.58 Aligned_cols=237 Identities=14% Similarity=0.011 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC----hhHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT--VD----AVVAT 360 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 360 (619)
..|..+...+...|++++|+..|+++.+.. ++...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 466777888888888888888888887776 66777888888888888888888888887664311 11 57788
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
.+...|...|++++|...|+++.+.+.. ...+...|++++|...++++... .|+ ...+..+...+...|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 8888999999999999999887643222 34566778899999999999886 555 457788888899999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+|...++.+.... +.+...+..+..+|.+.|++++|.+.++++... .+.....|..+...+...|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998752 445788999999999999999999999988732 3445566999999999999999999999999
Q ss_pred hccC------CCCcchHHHHHH
Q 007077 520 EKIE------SKDSSFHTLLAN 535 (619)
Q Consensus 520 ~~~~------p~~~~~~~~l~~ 535 (619)
.++. |++..++..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9988 877776665554
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=164.84 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELR-------EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITF 425 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 425 (619)
..-..+|++||++|++.|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678899999999999999999987653 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 426 IGVLSACSHGGL-VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 426 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999887 47889999999888 9999999999998877775544444444
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-14 Score=135.67 Aligned_cols=244 Identities=11% Similarity=-0.044 Sum_probs=192.2
Q ss_pred HcCChhHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 298 QFNRFDEAVALFREMQIIRL--KP-DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
..|++++|+..|+++.+... .| +...+..+...+...|++++|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35778888999888877532 12 34577778888888999999999998888765 5577888999999999999999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 375 ALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 375 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
|...|+++.+ .+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 36788999999999999999999999999986 666555555555667779999999999888764
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 452 YQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE---IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 452 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+++...+ .++..+...++.++|.+.+++....... .....|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 24444444 4777888889999999999988743221 12466889999999999999999999999999998855
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999988776
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.1e-13 Score=140.03 Aligned_cols=382 Identities=8% Similarity=-0.016 Sum_probs=198.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh---hHHHHHHccCCCCCeecHHHHHHHHHcCC--
Q 007077 94 VFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI---CNVKKLFDEMPDKDVVSWNVSISGHVKCM-- 168 (619)
Q Consensus 94 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 168 (619)
+...+.+.|++++|.++++...+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 33444556666667776666666542 22333444445555655 67777776666555556666665444444
Q ss_pred ---ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHH
Q 007077 169 ---RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEAR 244 (619)
Q Consensus 169 ---~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 244 (619)
++++|+..|++..+ .|.. ..+..+...+...+..+.+...++.+.+. ...++.....|...|...+.++++.
T Consensus 86 ~~~~~~~A~~~~~~Aa~-~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA-NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCcCHHHHHHHHHHHHH-CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 56777777777666 3322 13334444443333322222233333222 2233444555555555555444433
Q ss_pred HHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCH
Q 007077 245 ELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN---RFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~ 321 (619)
. .+..++......++..+..+...|...| +.++|+..|++..+.| .++.
T Consensus 162 ~---------------------------~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a 213 (452)
T 3e4b_A 162 D---------------------------DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTA 213 (452)
T ss_dssp H---------------------------HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCH
T ss_pred H---------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHH
Confidence 2 2233344444444456666666666666 6667777776666655 2222
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHH-H--H
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICG-L--A 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~ 398 (619)
..+..+...|... ....+++++|...|++....++..+..+... | .
T Consensus 214 ~~~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~ 262 (452)
T 3e4b_A 214 QRVDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFP 262 (452)
T ss_dssp HHHHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 2222333333222 0001455555555555542245555555555 3 3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---
Q 007077 399 MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG-----LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR--- 470 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 470 (619)
..+++++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. +-+...+..|..+|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCC
Confidence 5677788888888877765 4455555555555 44 7888888887664 3455667777777765
Q ss_pred -cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHH--HhCCCh
Q 007077 471 -AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIY--ASANRW 543 (619)
Q Consensus 471 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 543 (619)
..++++|...|++....+++.. ...|...|.. ..++++|...++++.+..+.... ..+..+. ...++.
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~~~A---~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQNSA---DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQR 408 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTCTTH---HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHH
T ss_pred CCcCHHHHHHHHHHHHhhChHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHH
Confidence 3488888888888776655444 6666666653 45888899998888877654433 3333332 223456
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
.+|.++.++...
T Consensus 409 ~~a~~~~~~~~~ 420 (452)
T 3e4b_A 409 AEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.6e-14 Score=134.44 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=147.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD--AVVATALIEMY 366 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 366 (619)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+....++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555666666666666655432 11222455555555566666666666665555221111 12355666666
Q ss_pred HhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007077 367 AKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 442 (619)
...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777666666542 34566667777777777777777777776655 443 344555552333445777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCCC----CCc---ccHHHHHHHHHHHHHcCCHHHH
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPNE----NNE---IIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a 512 (619)
..|+.+.+.. +.+...+..+..++...|+ +++|...++++... +++ ....+|..+...+...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776541 2235566666667766666 55566665554411 111 1234678888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
...++++.+++|+++.++..+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999998877776655443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=4.8e-14 Score=142.51 Aligned_cols=344 Identities=11% Similarity=-0.014 Sum_probs=229.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh---hhHHHHhccCCCCCchhHHHHHHHHHhcC---
Q 007077 196 TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL---SEARELFDEMPNKNVICWTSMVSGYVNCG--- 269 (619)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 269 (619)
+...+.+.|+++.|..+++.+.+. .++..+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 445567789999999999998776 3444556677777888888 89999999988777777888888666655
Q ss_pred --CHHHHHHHHccCCCC-ChhhHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 007077 270 --QLEKARDLFDRSPVR-DIVLWTAMINGYVQFNRFD---EAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWI 343 (619)
Q Consensus 270 --~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 343 (619)
++++|...|++...+ +...+..+...|...+..+ ++.+.+......|. ......+...+...+.++.+...
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999876533 5568888888888776544 45555555555553 33445566666666644443333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC----CChHHHHHHHHHH
Q 007077 344 HGYINENRITVDAVVATALIEMYAKCG---LIEKALEIFYELREK---DAASWTSIICGLAMN----GKINKALELFSQM 413 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----g~~~~A~~~~~~m 413 (619)
...+.+.-...++..+..|..+|...| +.++|++.|++..+. +...+..+...|... +++++|+..|++.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 222222222334458888999999999 999999999987643 333446777777554 7999999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCC
Q 007077 414 ISGGAKPDDITFIGVLSA-C--SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-----LLDEAEELIRKIP 485 (619)
Q Consensus 414 ~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 485 (619)
. .| +...+..+... + ...++.++|..+|++..+. + +...+..|..+|. .| ++++|.+.|++..
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7 32 33455555555 3 5689999999999998864 3 6778888888887 55 9999999999998
Q ss_pred CCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 007077 486 NENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 557 (619)
.+++. .+..|...|.. ..++++|...++++.+ +.++.+...|+.+|.. ..+.++|..++++..+.|
T Consensus 315 -~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 -GREVA---ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp -TTCHH---HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred -CCCHH---HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44433 37777777665 3399999999999876 4567778899999886 458999999999999887
Q ss_pred Cc
Q 007077 558 VR 559 (619)
Q Consensus 558 ~~ 559 (619)
..
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=7.1e-13 Score=124.67 Aligned_cols=225 Identities=11% Similarity=-0.051 Sum_probs=132.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIHGYINENRITVDAVVAT 360 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (619)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4555666666666667777777777666552 123344444444444 555555555555444433
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAM----NGKINKALELFSQMISGGAKPDDITFIGVLSACSH-- 434 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 434 (619)
+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444555555555 556666666666655543 34455555555555
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH---
Q 007077 435 --GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI--- 505 (619)
Q Consensus 435 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 505 (619)
.+++++|...|++..+. + +...+..+...|.. .+++++|++.+++....+. ...+..+...+..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 66666666666666543 1 34455556666665 6667777776666553322 2336666666666
Q ss_pred -cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 007077 506 -YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 506 -~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 558 (619)
.+++++|...++++.+..| +..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777777777777766655 4556677777777 7777777777777766543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.6e-13 Score=134.33 Aligned_cols=245 Identities=11% Similarity=0.059 Sum_probs=202.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGA-LEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
+...|+.+...+...|++++|+..|++..+. .| +...|..+..++...|+ +++|...++.+++.. +.+..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3457888888889999999999999998874 44 45577888888888896 999999999998875 5678889999
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCc
Q 007077 363 IEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSH-GGL 437 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~ 437 (619)
..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998763 47788999999999999999999999999987 565 5688888888888 666
Q ss_pred HHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC--
Q 007077 438 VDEG-----RRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-- 507 (619)
Q Consensus 438 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 507 (619)
.++| +..+++.+.. .|+ ...|..+..+|.+.| ++++|++.+.++ ..++.+...+..++..+.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcc
Confidence 5777 5788888764 344 678888999999888 689999999888 445666667888998888874
Q ss_pred -------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHh
Q 007077 508 -------NVDMGEKLAALL-EKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 508 -------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+++|+++++++ .+++|.....|..++..+..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999999988888876554
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=7e-13 Score=124.71 Aligned_cols=232 Identities=10% Similarity=-0.076 Sum_probs=160.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVR-DIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALL 328 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 328 (619)
+..++..+...+...|++++|...|++...+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567888899999999999999999876544 66788899999999 999999999999998875 566676777
Q ss_pred HHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChH
Q 007077 329 TGCAQ----LGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 329 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 404 (619)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 77777 777777777777766643 3444444444444400 0055556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSH----GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDE 476 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 476 (619)
+|+..|++..+.+ +..++..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 6666666655543 33444555555555 66777777777766653 234566667777777 777777
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcc
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|++.+++....+. ...+..+...+.. .+++++|...++++.+..|+++.
T Consensus 205 A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 205 ALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777664333 3347777777777 78888888888888887776544
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=3.3e-13 Score=121.81 Aligned_cols=195 Identities=16% Similarity=0.038 Sum_probs=113.5
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007077 284 RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALI 363 (619)
Q Consensus 284 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (619)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345566666777777777777777777766532 2234456666666666667777766666666654 44555666666
Q ss_pred HHHHhC-----------CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007077 364 EMYAKC-----------GLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL 429 (619)
Q Consensus 364 ~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 429 (619)
.++... |++++|+..|++..+ .+...|..+...|...|++++|+..|++.++.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 666666 666666666666542 245566666666667777777777777666654 4555666666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 430 SACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.++...|++++|...|+...+. -+.+...+..+..++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666667777777777666653 1233556666666666667777666666554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=8.3e-13 Score=122.50 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 433 (619)
.+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++...+..|+ ...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 344444444444444444444444321 2344555555666666666666666666655323443 335555666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..|++++|...++.+.+.. +.+...+..++..|...|++++|.+.++++... .+.....+..+...+...|++++|.
T Consensus 153 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 6666777766666665531 223555666666666666666666666665422 2333444666666666677777777
Q ss_pred HHHHHHhccCCCCcch
Q 007077 514 KLAALLEKIESKDSSF 529 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~ 529 (619)
+.++++.+..|+++..
T Consensus 230 ~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 230 SYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHCCCCHHH
Confidence 7777776666666653
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=4e-13 Score=122.10 Aligned_cols=197 Identities=12% Similarity=0.001 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC 432 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 432 (619)
...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34445555555566666666666555432 244556666666666666666666666666541 22344556666666
Q ss_pred hcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 433 SHG-GLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 433 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
... |++++|...++.+.+. +..|+ ...+..++.++...|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHH
Confidence 666 6666666666666541 22233 455666666666677777777666665521 2223444666666777777777
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIES-KDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|...++++.+..| +++..+..++.++...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666667777777777777766654
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.2e-13 Score=138.64 Aligned_cols=266 Identities=11% Similarity=-0.002 Sum_probs=185.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHc----C-CCCChhHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDK----FILVALLTGCAQLGALEQGKWIHGYINEN----R-ITVDAVVA 359 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 359 (619)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++...+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666777777777777776664211 21 34556666666777777777776665442 1 12234566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELREK---------DAASWTSIICGLAMNGK-----------------INKALELFSQM 413 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m 413 (619)
..+...|...|++++|...|++..+. ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777788888888888777765431 24467777888888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 414 ISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 414 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11222 236777778888899999999999887654211122 236788888999999999999998876
Q ss_pred CC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 485 PN-----ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 485 ~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.. ........++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 51 1111224567888889999999999999999998765443 346888999999999999999999988
Q ss_pred Hh
Q 007077 554 KE 555 (619)
Q Consensus 554 ~~ 555 (619)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3.2e-13 Score=125.31 Aligned_cols=199 Identities=10% Similarity=-0.036 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC 432 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 432 (619)
...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667788888899999999999988753 467789999999999999999999999998873 23567888888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
...|++++|..+++.+... +..| +...+..++..|...|++++|.+.++++... .+.....+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998762 3445 4678888999999999999999999987632 33345668999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
|...++++.+..|+++..+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998743
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=8.9e-14 Score=128.25 Aligned_cols=143 Identities=10% Similarity=0.011 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+... .+.+...+..++..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 334444444444444444444444444431 112334444444444445555555554444432 11223344444444
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
+.+.|++++|.+.++++... .+.+..+|..+...+...|++++|...++++.+..|+++.++..++
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 44444444444444443311 1122233444555555555555555555555555555544444333
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.1e-13 Score=127.64 Aligned_cols=200 Identities=14% Similarity=0.089 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667778888889999999999888754 367788889999999999999999999998872 234678888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998752 456788999999999999999999999987632 3334556899999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+|+..++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998743
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2e-13 Score=136.56 Aligned_cols=268 Identities=12% Similarity=0.027 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC-CChh
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD----KFILVALLTGCAQLGALEQGKWIHGYINEN----RIT-VDAV 357 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 357 (619)
..+......+...|++++|+..|+++.+.+.. + ...+..+...+...|+++.|...+..+.+. +.+ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566666677777777777766654211 2 234555666666677777776666655432 111 1234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCC--------------------hHHHHH
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGK--------------------INKALE 408 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 408 (619)
++..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5666777777777777777777765531 2 3367777777778888 888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 007077 409 LFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 409 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
.+++.... +..|. ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77775432 21222 236677777788888888888888887654222222 2367778888888888888888
Q ss_pred HHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHH
Q 007077 480 LIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 480 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.+++... .++ .....++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876541 111 1124457777888888888888888888887665443 4467788888888888888888
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.3e-12 Score=118.80 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMN-GKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
...+..+...|...|++++|...|+++. ..+..++..+...+... |++++|...++++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 4455555556666666666666666543 23556677777788888 888888888888887433455 456777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE-IIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 509 (619)
.+...|++++|...++.+.+. .+.+...+..++.++.+.|++++|.+.++++... .+ .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcH
Confidence 888889999999988888764 2334778888888999999999999999887632 22 3444577777778899999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+.+..+++.+.+..|+++.....+
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999988755443
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=4.8e-13 Score=125.72 Aligned_cols=229 Identities=7% Similarity=-0.054 Sum_probs=186.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh----hHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAA----SWTSIICG 396 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 396 (619)
.+......+...|++++|...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556678889999999999999999875 45666888899999999999999999998765 2333 48899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (619)
+...|++++|+..|++..+. .|+ ..++..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 444 568889999999999999999999998753 2334677777773444456999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIE---SKD-----SSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 544 (619)
+|.+.|+++... .+.+...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988732 33345568888888888898 888999999998765 442 256888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007077 545 DVTNVRQKMKEMG 557 (619)
Q Consensus 545 ~A~~~~~~m~~~~ 557 (619)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998743
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=3.4e-13 Score=131.90 Aligned_cols=246 Identities=10% Similarity=0.017 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL-IEKALEIFYELRE---KDAASWTSIICGL 397 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 397 (619)
..+..+...+...|++++|...++.+++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356677778889999999999999999876 6678899999999999997 9999999999874 4778999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHH
Q 007077 398 AMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR-AGLLD 475 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 475 (619)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999987 565 5689999999999999999999999999752 3457889999999999 66657
Q ss_pred HH-----HHHHhhCCCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-------
Q 007077 476 EA-----EELIRKIPNENNEIIVPLYGALLSACRIYG--NVDMGEKLAALLEKIESKDSSFHTLLANIYASAN------- 541 (619)
Q Consensus 476 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 541 (619)
+| ++.+++... -++.+...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~-l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK-LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 477877762 24445556999999898888 689999999998 999999999999999999975
Q ss_pred --ChHHHHHHHHHH-HhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHH
Q 007077 542 --RWEDVTNVRQKM-KEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600 (619)
Q Consensus 542 --~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 600 (619)
.+++|.++++++ .+ .+|...+.|..+.......
T Consensus 331 ~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 358999999998 54 2566666677666655544
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.9e-13 Score=132.68 Aligned_cols=267 Identities=13% Similarity=0.038 Sum_probs=188.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC-CChhHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPD----KFILVALLTGCAQLGALEQGKWIHGYINEN----RIT-VDAVVA 359 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 359 (619)
+......+...|++++|+..|+++.+.... + ...+..+...+...|+++.|...+....+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777777664311 2 245566666777777777777777665432 111 124566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCC--------------------hHHHHHHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELRE-----KD----AASWTSIICGLAMNGK--------------------INKALELF 410 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 410 (619)
..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888888877543 12 3367778888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 411 SQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 411 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11222 236777778888999999999999887654211122 337788889999999999999999
Q ss_pred hhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHH
Q 007077 482 RKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 482 ~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
++... .++ .....++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 87651 111 1224567888889999999999999999998765543 346788999999999999999999
Q ss_pred HHHHhC
Q 007077 551 QKMKEM 556 (619)
Q Consensus 551 ~~m~~~ 556 (619)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998763
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=9.6e-11 Score=122.35 Aligned_cols=442 Identities=10% Similarity=0.031 Sum_probs=286.8
Q ss_pred CChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCC---hhHHH
Q 007077 67 GSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGK---ICNVK 143 (619)
Q Consensus 67 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 143 (619)
....+.+..|++....+ +-|..+|..++..+.+.+.++.+..+++++... ++.....|...+..-.+.|+ ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34455666666666654 457888999999988888999999999999875 44566778888888888888 89999
Q ss_pred HHHccCCC-----CCeecHHHHHHHHHcCCCh--------hHHHHHHHHhHhcCCC-CCCh-hhHHHHHHHhhc------
Q 007077 144 KLFDEMPD-----KDVVSWNVSISGHVKCMRF--------EDAVDVFRRMRQGCNL-MPDE-GTVVSTLSACTA------ 202 (619)
Q Consensus 144 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~~-~~~~~ll~~~~~------ 202 (619)
++|++... |++..|...+.-..+.++. +...++|+......|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987653 5666777777666555543 2344677766554666 5543 455555544322
Q ss_pred ---CCChHHHHHHHHHHHHhccCC--hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 007077 203 ---LKNLELGKEIHRYINQELEFT--PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDL 277 (619)
Q Consensus 203 ---~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (619)
.+..+.+..++..++. +|.. ..+|......-...+ ...+.+++.+. ..+++.|...
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHH
Confidence 2234566677766664 2222 223322222111111 11122221110 0111222222
Q ss_pred Hc-------cCC----C----------C--C------hhhHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCH
Q 007077 278 FD-------RSP----V----------R--D------IVLWTAMINGYVQFN-------RFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 278 ~~-------~~~----~----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~ 321 (619)
+. .+. . | + ...|...+.---..+ ..+.+..+|+++... .+-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 21 110 0 0 1 134544444322222 123456778887764 23355
Q ss_pred HHHHHHHHHHHccCcHHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-------------C--
Q 007077 322 FILVALLTGCAQLGALEQGK-WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-------------K-- 385 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~-- 385 (619)
..|...+.-+.+.|+.+.|. .+++..... +|.+...+-..+....+.|+++.|..+|+++.. |
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 56667777777888888886 999998874 466777788889999999999999999998764 2
Q ss_pred ----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcC
Q 007077 386 ----------DAASWTSIICGLAMNGKINKALELFSQMISG-GAKPDDITFIGVLSACSH-GGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 386 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~ 453 (619)
....|...+....+.|..+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+|+...+.+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~- 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-
Confidence 1236888888888899999999999999886 2 1223334333332233 355999999999999864
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN--EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
+.+...|...++.....|+.+.|..+|++...... ......|...+..-...|+.+.+.++.+++.+..|+++. ..
T Consensus 501 -p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~ 578 (679)
T 4e6h_A 501 -ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LE 578 (679)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HH
T ss_pred -CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HH
Confidence 44566778889988899999999999999884422 134567999999989999999999999999999999876 44
Q ss_pred HHHH
Q 007077 532 LLAN 535 (619)
Q Consensus 532 ~l~~ 535 (619)
.+++
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=7.9e-13 Score=116.04 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=137.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL 464 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 464 (619)
++..|..+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888888888888888888888876 555 457788888888889999998888888764 23346677777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 544 (619)
...+...+++++|.+.+.+... -.+.+...+..+...+...|++++|+..++++.+++|.++.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIA-LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888888999999998887762 234445568888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007077 545 DVTNVRQKMKEMG 557 (619)
Q Consensus 545 ~A~~~~~~m~~~~ 557 (619)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987643
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=4.4e-13 Score=126.14 Aligned_cols=221 Identities=11% Similarity=-0.112 Sum_probs=163.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 45677888888888888888888888887753 3356678888888888888988888888888764 456778888889
Q ss_pred HHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 365 MYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
+|...|++++|...|+++.+ |+.......+..+...|++++|...+++.... .|+......++..+...++.++|.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999988763 33333444445556779999999999887775 333333334667777888888999
Q ss_pred HHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 443 RFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
..++..... .|+ ...+..+..+|.+.|++++|.+.|+++... ++.+ +.....++...|++++|++.+
T Consensus 198 ~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 888876532 232 577888999999999999999999988743 3334 444566777888888888776
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=3.8e-13 Score=136.82 Aligned_cols=210 Identities=8% Similarity=-0.054 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI-EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
++.+...+....... +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 44667777788888888888 888888887653 3577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHH
Q 007077 413 MISGGAKPDDITFIGVLSACSHG---------GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA--------GLLD 475 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 475 (619)
.++. .|+..++..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 67778888888999999 99999999999998752 34478899999999998 9999
Q ss_pred HHHHHHhhCCCCCCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 476 EAEELIRKIPNENNE---IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+|++.|++.... ++ .+...|..+..++...|++++|+..++++.+++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~-~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKV-DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHH-CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988742 33 46667999999999999999999999999999999999999999999999999999975544
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.6e-12 Score=127.36 Aligned_cols=296 Identities=13% Similarity=-0.024 Sum_probs=168.3
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCC----hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHH
Q 007077 198 SACTALKNLELGKEIHRYINQELEFT----PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (619)
..+...|+++.|...++.+.+..+.+ ..++..+...|...|++++|...|++.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------- 73 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD----------------------- 73 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------------
Confidence 33444445555555544444443333 234556666777777777777665542
Q ss_pred HHHHHccCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCc----------
Q 007077 274 ARDLFDRSPVR--DIVLWTAMINGYVQFNRFDEAVALFREMQIIRL-KPD----KFILVALLTGCAQLGA---------- 336 (619)
Q Consensus 274 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~---------- 336 (619)
..+......+ ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 -l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 74 -LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred -HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 1222222111 234567777778888888888888877654210 011 2244455555555555
Q ss_pred ----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChH
Q 007077 337 ----------LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 337 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 404 (619)
++.|...+....+. +.....+ ...++..+...|...|+++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence 44444444433221 1111000 1234555556666666666
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHH
Q 007077 405 KALELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 405 ~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 475 (619)
+|+..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|+++
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 66666666543210 111 125666666777777777777777766543211112 456677778888888888
Q ss_pred HHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES------KDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 544 (619)
+|.+.+++... .++ .....++..+...+...|++++|...++++.++.+ ....++..++.++...|+..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 88887776541 111 22244577888888899999999999988876633 33556788899998888764
Q ss_pred H
Q 007077 545 D 545 (619)
Q Consensus 545 ~ 545 (619)
.
T Consensus 365 ~ 365 (406)
T 3sf4_A 365 S 365 (406)
T ss_dssp C
T ss_pred H
Confidence 3
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=6.3e-12 Score=125.95 Aligned_cols=273 Identities=11% Similarity=-0.023 Sum_probs=154.4
Q ss_pred hcCCChHHHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 007077 201 TALKNLELGKEIHRYINQELEFTP----IMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARD 276 (619)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 276 (619)
...|+++.|...++.+.+..+.++ .++..+...|...|++++|...|++. ..
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~ 114 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD------------------------LT 114 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------HH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HH
Confidence 334444444444444444322222 24556666777777777777765543 22
Q ss_pred HHccCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCc-------------
Q 007077 277 LFDRSPV--RDIVLWTAMINGYVQFNRFDEAVALFREMQII----RLKP-DKFILVALLTGCAQLGA------------- 336 (619)
Q Consensus 277 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~------------- 336 (619)
+.+.... ....++..+...|...|++++|+..+++..+. +-.| ...++..+...+...|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 2222211 13356777778888888888888888876542 1111 12245555555555666
Q ss_pred ----HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 337 ----LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 337 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
++.|...+....+. +.....+ ...++..+...|...|++++|+..+
T Consensus 195 a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44444444433221 1111100 1234555566666666666666666
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 411 SQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 411 ~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++..+... .++ ..++..+...+...|++++|...++.......-..+ ...+..+..+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66544210 011 125666667777777777777777766543211111 456777788888888888888888
Q ss_pred hhCCCC----C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 482 RKIPNE----N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 482 ~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
++.... + ......++..+...+...|++++|...++++.++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 766511 1 1222345777888889999999999999999877653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=2.5e-12 Score=127.52 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=135.9
Q ss_pred HHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C-----ChhhHHHH
Q 007077 329 TGCAQLGALEQGKWIHGYINEN----RITV-DAVVATALIEMYAKCGLIEKALEIFYELRE-----K-----DAASWTSI 393 (619)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 393 (619)
..+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555555555555555432 1111 224555566666666666666666655432 1 12356666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC-CCChhHHHHH
Q 007077 394 ICGLAMNGKINKALELFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QI-QPKLEHYGCL 464 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l 464 (619)
...|...|++++|+..|++..+. +-.+. ..++..+...+...|++++|...+++..... +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 67777777777777777766542 11111 1356667777777777777777777765421 11 1224566777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPN----ENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+|.+.|++++|.+.+++... .+++.....+..+...+...|+ +++|...+++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 7777777888887777776541 1233333335566666777777 66677666665 33344455677888888
Q ss_pred HhCCChHHHHHHHHHHHh
Q 007077 538 ASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888888764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.9e-12 Score=113.61 Aligned_cols=169 Identities=13% Similarity=0.008 Sum_probs=140.4
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
++.+|..+...|...|++++|++.|++..+ .++.+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 566788888888888899998888888653 36778888999999999999999999998876 444 456777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...++++.+...++..... .+.+...+..+..+|.+.|++++|++.|++... -++.+..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-IKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-hcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999998764 244577888899999999999999999998773 24445667999999999999999
Q ss_pred HHHHHHHHHhccCCCCcc
Q 007077 511 MGEKLAALLEKIESKDSS 528 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~ 528 (619)
+|+..++++.+++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 999999999999998754
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=6.7e-11 Score=113.14 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 303 DEAVALFREMQIIRLKPDKFILVALLTGCA-------QLGAL-------EQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 303 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
++|..+|+++.... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888776642 223445555555543 34664 7888888888773224566688888888888
Q ss_pred CCCHHHHHHHHHhcCCC---Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 007077 369 CGLIEKALEIFYELREK---DAA-SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC-SHGGLVDEGRR 443 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 443 (619)
.|++++|..+|+++.+. +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887642 343 78888888888899999999999988763 22334444333332 23689999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNE--IIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.... +.+ .....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888753 345778888888888899999999999888753 122 245568888888888899999999999999
Q ss_pred ccCCCCcc
Q 007077 521 KIESKDSS 528 (619)
Q Consensus 521 ~~~p~~~~ 528 (619)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88888664
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=2.4e-10 Score=119.40 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=229.9
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCC---hhHHHHHHHHhHH
Q 007077 8 QAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGS---FRKSLLLFSKLRE 81 (619)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 81 (619)
+...+..+ |.|...|..++..+. +.+.++.+..+|+++- +.+...|..-+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~--~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHV--SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 467888888888887 7788888888888663 4566677788888778888 8888888888877
Q ss_pred CC-CCCCcccHHHHHHHHhccCCh--------hHHHHHHHHHHH-hCC-CCC-hhhHHHHHHHhHh---------cCChh
Q 007077 82 RG-VSPDNFTYPFVFKAVGWLGEV--------KKGEKVHGYVVK-TGL-EFD-TYVCNSIMDMYGV---------LGKIC 140 (619)
Q Consensus 82 ~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~ 140 (619)
.. .+|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 136777777766655444433 334467776664 355 454 3567766665432 34567
Q ss_pred HHHHHHccCCC-CCe---ecH---HHHHHHHH----------cCCChhHHHHHHHHhHhc-CCCC---CC----------
Q 007077 141 NVKKLFDEMPD-KDV---VSW---NVSISGHV----------KCMRFEDAVDVFRRMRQG-CNLM---PD---------- 189 (619)
Q Consensus 141 ~A~~~~~~~~~-~~~---~~~---~~li~~~~----------~~g~~~~A~~~~~~m~~~-~~~~---p~---------- 189 (619)
.+.++|+.... |.. ..| ..+...+- ...+++.|...+..+... .++. |.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 78888877664 211 122 22221110 011223344444433210 0110 10
Q ss_pred ---h-------hhHHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHH-HHhccCC
Q 007077 190 ---E-------GTVVSTLSACTALK-------NLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAR-ELFDEMP 251 (619)
Q Consensus 190 ---~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 251 (619)
. ..|...+.--...+ ..+....+++..+..+|.++.+|...+..+...|+.++|. .+|++..
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0 11222222211111 0122345566666666666666666666666666666664 6555433
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC---------CCCC--
Q 007077 252 NKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR---------LKPD-- 320 (619)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~-- 320 (619)
. ..+.+...|-..+...-+.|++++|.++|+.+.... -.|+
T Consensus 372 ~----------------------------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 372 Q----------------------------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp H----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred H----------------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 2 012233444455555555556666666655554321 0121
Q ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CC
Q 007077 321 ----------KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCG-LIEKALEIFYELRE---KD 386 (619)
Q Consensus 321 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~ 386 (619)
...|...+....+.|+.+.|+.+|..+.+.-......+|...+..-.+.+ +.+.|..+|+...+ .+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 12455555555666667777777777665411112233333333333433 36777777776553 24
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD--DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL 464 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 464 (619)
...|...+......|+.+.|..+|++.+.....+. ...|...+.--...|+.+.+..+.+++.+.+ |+......+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f 580 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHH
Confidence 55566666666666777777777777766522111 2355555555566677777777777776652 443333444
Q ss_pred HHHHH
Q 007077 465 IDLLG 469 (619)
Q Consensus 465 ~~~~~ 469 (619)
++-|.
T Consensus 581 ~~ry~ 585 (679)
T 4e6h_A 581 TNKYK 585 (679)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 44443
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=3.4e-12 Score=123.75 Aligned_cols=239 Identities=12% Similarity=0.035 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCC----h
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQII----RLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRI-TVD----A 356 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~ 356 (619)
..+..+...|...|++++|+..+++.... +..|. ...+..+...+...|++++|...+....+... .++ .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 34555555566666666666666554321 11111 23445555556666666666666655443210 011 2
Q ss_pred hHHHHHHHHHHhCCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhCCChHHHH
Q 007077 357 VVATALIEMYAKCGL--------------------IEKALEIFYELRE-----K----DAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
.++..+...|...|+ +++|...+++... . ....+..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 355566666667777 7777766665432 1 2346777788888888888888
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 007077 408 ELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 408 ~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 478 (619)
..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888764310 111 236777778888899999999998887653221222 456778888999999999999
Q ss_pred HHHhhCCCC----C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 479 ELIRKIPNE----N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 479 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+.+++.... + ......++..+...+...|++++|...++++.++.+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 998876521 1 1222345778888999999999999999999887664
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=6.4e-13 Score=127.52 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=125.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------C
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQII-------RLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN------R 351 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 351 (619)
+..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888888899999999999999888663 11222335556666666667777776666665443 1
Q ss_pred C-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HH
Q 007077 352 I-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DI 423 (619)
Q Consensus 352 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~ 423 (619)
. +....++..+...|...|+ +++|...|+++.+. +..|+ ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~-------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGK-------------------------------YKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTC-------------------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCc-------------------------------HHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 1122334444444444444 44444444444332 11122 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----------
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE---------- 487 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 487 (619)
++..+...+...|++++|..+++.+.... +..| ....+..+..+|...|++++|.+.++++...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44555555556666666666665554321 0011 1334555666666666666666666554310
Q ss_pred CCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 488 NNEII----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 488 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.... ...+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111 111222223334455556666667777777777777788888888888888888888887754
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=125.12 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=147.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCC--------C---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc------CC
Q 007077 255 VICWTSMVSGYVNCGQLEKARDLFDRSPV--------R---DIVLWTAMINGYVQFNRFDEAVALFREMQII------RL 317 (619)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 317 (619)
..++..+...+...|++++|...|++... . ...++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688899999999999999999977543 1 3467888999999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhh
Q 007077 318 KP-DKFILVALLTGCAQLGALEQGKWIHGYINEN------RI-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAAS 389 (619)
Q Consensus 318 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (619)
.| ....+..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------- 177 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--------- 177 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 33 3457888889999999999999999887654 11 1122334445555555555555555544
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCC
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY------QIQP 456 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p 456 (619)
++.+. +..|+ ..++..+...+...|++++|...++.+.... ...+
T Consensus 178 ----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 178 ----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 43332 11222 2244455555555566666665555554320 0111
Q ss_pred C-------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 457 K-------LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 457 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
. ...+..+...+...+.+.+|...++.... ..+....+|..+...|...|++++|...++++.++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11222233334455566666666666653 34556667899999999999999999999999887764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=6.8e-12 Score=127.60 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 372 IEKALEIFYELRE---KDAASWTSIICGLAMNGKI-NKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 372 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
++++...+++... .+...|..+...|...|++ ++|++.|++.++. .|+ ..++..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666665543 3678899999999999999 9999999999987 565 6789999999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc--------CCH
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRA---------GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY--------GNV 509 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 509 (619)
...+ ..|+...+..+..+|... |++++|++.+++.... ++.+...|..+..++... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9984 468888999999999999 9999999999988732 444556799999999998 999
Q ss_pred HHHHHHHHHHhccCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 510 DMGEKLAALLEKIES---KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++|+..++++.+++| .++.+|..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998863
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=6.9e-12 Score=132.61 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3567788888888888888888888888876 666 567888888888889999999988888764 454 778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+..+|.+.|++++|++.|++... -++....+|..+...+...|++++|+..|+++.+++|+++.++..++.+|...|+|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999988763 23445567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=3e-11 Score=115.57 Aligned_cols=215 Identities=8% Similarity=-0.022 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hCCCH-------HHHHHHHHhcCC---C-ChhhHHHHHHHHHh
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYA-------KCGLI-------EKALEIFYELRE---K-DAASWTSIICGLAM 399 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 399 (619)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887763 667888888888776 45885 999999998765 2 56689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDD-I-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG-RAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 476 (619)
.|++++|..+|++.++. .|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999986 6653 3 7888889999999999999999999863 2334555554444432 3699999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI---ESK-DSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
|.++|++.... .+.+...|..++..+...|++++|+.+|+++... .|+ ...+|..++..+.+.|++++|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988632 3335567999999999999999999999999985 443 667889999999999999999999999
Q ss_pred HHhCCC
Q 007077 553 MKEMGV 558 (619)
Q Consensus 553 m~~~~~ 558 (619)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 987543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.3e-11 Score=112.44 Aligned_cols=190 Identities=12% Similarity=-0.030 Sum_probs=133.7
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGV 428 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 428 (619)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+. .++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888887653 56666777788888888888888888888876 5553 467777
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHH
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKL-------EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGAL 499 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 499 (619)
...+...|++++|...++...+.. +.+. ..|..+...+...|++++|++.|+++... ++. ....|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-CCCcccHHHHHHH
Confidence 778888888888888888877642 2223 45677777777888888888888877733 334 44556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...+... +...++++..+.+.++..|... .....+.+++|...+++..+
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 6666443 4455666777766665544333 33455667999999999877
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.2e-10 Score=115.22 Aligned_cols=231 Identities=8% Similarity=-0.011 Sum_probs=162.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC------CCChhHHH
Q 007077 292 MINGYVQFNRFDEAVALFREMQII----RLKP-DKFILVALLTGCAQLGALEQGKWIHGYINENRI------TVDAVVAT 360 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 360 (619)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777666542 1111 123556666666677777777766666554210 11234667
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGKINKALELFSQMISG----GAKPD-DITFI 426 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 426 (619)
.+...|...|++++|...|++..+. + ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888876531 1 247888899999999999999999998762 22244 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGL---LDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
.+...+...|++++|...+++......-.++ ...+..+...|...|+ +++|+.++++... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8889999999999999999987654211122 3345678888899999 9999999998842 333444678889
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
..|...|++++|...++++.++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999876543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.6e-10 Score=110.07 Aligned_cols=265 Identities=12% Similarity=-0.016 Sum_probs=178.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCC----hhHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKF----ILVALLTGCAQLGALEQGKWIHGYINENRI-TVD----AVVATA 361 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 361 (619)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766543222222 344555566677777777777776654210 111 123456
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK-----------DAASWTSIICGLAMNGKINKALELFSQMISGGAK--P--DDITFI 426 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~ 426 (619)
+...+...|++++|...+++.... ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888888888888775421 1234566778888999999999999988764221 1 124667
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCCc---ccHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG-----CLIDLLGRAGLLDEAEELIRKIPNENNE---IIVPLYGA 498 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ 498 (619)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++....... .....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777888899999999999998875422111111222 2334577899999999999988743211 11234677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+...+...|++++|...++++....+.. ..++..++.++...|++++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888999999999999999887654332 13567789999999999999999998864
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.5e-11 Score=106.27 Aligned_cols=162 Identities=18% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544331 122344555555555556666666665555543 1233455556666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655421 2223445777777777788888888888888777787777788888888888888888888
Q ss_pred HHHHHh
Q 007077 550 RQKMKE 555 (619)
Q Consensus 550 ~~~m~~ 555 (619)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=8.5e-11 Score=106.97 Aligned_cols=206 Identities=10% Similarity=0.010 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHH
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIIC 395 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 395 (619)
.|...+......+...|++++|...+....+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3557788888899999999999999999999874477788888999999999999999999987643 5678899999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPD-D-------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCL 464 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 464 (619)
.|...|++++|+..|++.++. .|+ . ..|..+...+...|++++|...|+...+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999987 554 3 3477777888899999999999999874 3565 5778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+|...|+. .++++..-. ......|.... ....+.+++|+..++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776653 222222111 11122244433 44567799999999999999999998777776653
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=3.9e-10 Score=111.41 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPKLEH 460 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 460 (619)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444445555555555555555544331 11111 1244555555555666666666655554310 11112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP----NENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+..+..+|.+.|++++|.+.+++.. ..+++.....+..+...+...|+ +.+|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 5556666666666666666665433 11233333334444444555555 55555555542 2223333445667
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 007077 534 ANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776664
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.3e-10 Score=101.73 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS 433 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 433 (619)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666778888999999999999988753 67788889999999999999999999988762 334668888888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..|++++|...++.+... .+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998875 2456788889999999999999999999987632 3344566899999999999999999
Q ss_pred HHHHHHhccCCCCcchH
Q 007077 514 KLAALLEKIESKDSSFH 530 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~ 530 (619)
..++++.+..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999998877643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=1.1e-10 Score=115.38 Aligned_cols=298 Identities=10% Similarity=0.025 Sum_probs=212.1
Q ss_pred cCChhHHHHHHHHH--HhcCChhhHHHHhccCCC--------CCchhHHHHHHHH--HhcCC---HH---------HHHH
Q 007077 221 EFTPIMGNALLDMY--CKCGCLSEARELFDEMPN--------KNVICWTSMVSGY--VNCGQ---LE---------KARD 276 (619)
Q Consensus 221 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~--~~~g~---~~---------~A~~ 276 (619)
.++..+-+.+-+.| .+.+++++|.++++++.+ .++..|-.++..- .-.+. .. +..+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35566667777777 889999999988877643 2233334333321 11111 11 3333
Q ss_pred HHccCCCC-C-h---hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 277 LFDRSPVR-D-I---VLWTAMINGYVQFNRFDEAVALFREMQIIRL-KPD----KFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 277 ~~~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
..+....+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+..
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322222 1 1 1233445567889999999999999875421 122 34677888899999999999999998
Q ss_pred HHHcCC-----C-CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHH
Q 007077 347 INENRI-----T-VDAVVATALIEMYAKCGLIEKALEIFYELRE-----KD----AASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 347 ~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
..+... . ....+++.+..+|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 865311 1 1245678899999999999999999988763 12 3578889999999999999999999
Q ss_pred HHHH-----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHH
Q 007077 412 QMIS-----GGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGL---LDEAEE 479 (619)
Q Consensus 412 ~m~~-----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~ 479 (619)
+..+ . .|. ..++..+...+.+.|++++|...+++......-.++ ...+..+...|...|+ +++|+.
T Consensus 247 ~al~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 247 KAAKVSREKV--PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9887 4 344 567888889999999999999999998875332222 3456677777888888 999999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.+++... .+.....+..+...|...|++++|...++++.+.
T Consensus 325 ~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998542 3333445778889999999999999999988654
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=7.9e-10 Score=102.86 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELREK---D---AASWTSIICGLAMNGKINKALELFSQMISGGA-KPD-DITF 425 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 425 (619)
.+...+..+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++.++... .|. ..++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666666777777777777777776532 2 44566667777777777777777777776511 112 2345
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 426 IGVLSACSH--------GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 426 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
..+..++.. .|++++|...|+.+.+.+ |+ ......+.......+.. ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~------------------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL------------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH------------------HHHH
Confidence 555566666 677777777777776542 32 22222211111110000 1114
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCcccCc
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASA----------NRWEDVTNVRQKMKEMGVRKVPG 563 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~ 563 (619)
..+...+...|++++|+..++++.+..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----- 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----- 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----
Confidence 6678889999999999999999999999854 4788999999877 999999999999987432
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 564 CSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
.+|........+.++...+++.....
T Consensus 227 ------------------~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 ------------------DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp ------------------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ------------------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 25667888888999998888765444
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.6e-10 Score=108.78 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQP 456 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p 456 (619)
++..+...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..++++..... +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445555555555555555555554432 11122 3355566666666666666666666665430 0012
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhc
Q 007077 457 -KLEHYGCLIDLLGRAGLLDEAEELIRKIPN--------ENNEIIVPLYGALLSACRIYGN------VDMGEKLAALLEK 521 (619)
Q Consensus 457 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~ 521 (619)
....+..+..+|.+.|++++|.+.++++.. .........|..+.......+. +..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 244566666677777777777776665431 0111112224333333333222 3333333333333
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 IESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..|....++..++.+|...|++++|.+++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566778888888888888888888888764
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=3.5e-08 Score=97.09 Aligned_cols=265 Identities=11% Similarity=-0.022 Sum_probs=149.5
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCChh----hHHHHHHHhhcCCChHHHHHHHHHHHHhc--cCCh----hHHHHH
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG----TVVSTLSACTALKNLELGKEIHRYINQEL--EFTP----IMGNAL 230 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l 230 (619)
...+...|++++|...+++... ..-..+.. .+..+...+...|+++.|...++...... ..+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567777777777777655 22111111 23333444556667777766666655541 1111 224556
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC----ChhhHHHHHHHHHHcCChhHHH
Q 007077 231 LDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVR----DIVLWTAMINGYVQFNRFDEAV 306 (619)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 306 (619)
...+...|++++|...+++. ..+......+ ....+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66677777777777655542 2233322222 2245666777888889999998
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-hhHHH-----HHHHHHHhCCCHHHHH
Q 007077 307 ALFREMQIIRLK----PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD-AVVAT-----ALIEMYAKCGLIEKAL 376 (619)
Q Consensus 307 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~ 376 (619)
..+++....... ....++..+...+...|++++|...++......-.++ ...+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888887653221 1234566677777788888888888877765321111 11111 2334466778888888
Q ss_pred HHHHhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 007077 377 EIFYELREKDA-------ASWTSIICGLAMNGKINKALELFSQMISG----GAKPDD-ITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 377 ~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
..+++....+. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88877664321 13455666677777777777777765432 111111 1334444555566666666666
Q ss_pred HHHhHH
Q 007077 445 FNTMTE 450 (619)
Q Consensus 445 ~~~~~~ 450 (619)
++....
T Consensus 316 l~~al~ 321 (373)
T 1hz4_A 316 LLDALK 321 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=1.6e-10 Score=122.12 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=119.8
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 419 KPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 419 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
.|+ ..+++.+...+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++... -++....+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~~~~a~ 80 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAY 80 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 465 458999999999999999999999999865 455 78899999999999999999999998873 244456679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..++...|++++|++.++++.+++|+++.+|..++.+|.+.|++++|++.+++..+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=8.1e-10 Score=104.57 Aligned_cols=172 Identities=9% Similarity=-0.055 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC------
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMN-GKINKALELFSQMISGGAKPD------ 421 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 421 (619)
+++.+..+|.+.|++++|+..|++..+. + ..+++.+...|... |++++|+..|++.++. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 3344444444444444444444443311 1 23456666677775 7777777777776553 111
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCccc--
Q 007077 422 -DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-----EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEII-- 492 (619)
Q Consensus 422 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-- 492 (619)
..++..+...+...|++++|...|+.......-.+.. ..|..+..++...|++++|...+++... .|..+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356666677777777777777777776542111111 1456666777777777777777777652 121111
Q ss_pred -HHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 493 -VPLYGALLSACR--IYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 493 -~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
...+..++.++. ..+++++|+..|+++..++|.....+.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 112333444443 345677777777777666665544333
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=2.5e-09 Score=96.80 Aligned_cols=181 Identities=10% Similarity=-0.040 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE--KD----AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI----TF 425 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 425 (619)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++. .|+.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566667777777777777777653 22 235666777777777777777777777765 34321 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 426 IGVLSACSH------------------GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 426 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
..+..++.. .|+.++|...|+.+.+. .|+ ...+........ .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH--------
Confidence 333344332 34555555555555532 222 111111110000 00000
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
......+...+...|++++|+..++++.+..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00123456678899999999999999999999986 46889999999999999999999999876654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.7e-09 Score=100.64 Aligned_cols=204 Identities=11% Similarity=-0.012 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C---hhh
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD---AVVATALIEMYAKCGLIEKALEIFYELRE--K-D---AAS 389 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 389 (619)
.+...+......+.+.|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345677778888999999999999999998864 333 66788899999999999999999999874 2 2 346
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAM--------NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
+..+..++.. .|++++|+..|++.++. .|+.. ..... ..+...... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999987 56532 22111 111111110 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcc
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIY----------GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+..+..+|.+.|++++|+..|+++.. .|+.+ ....+..+..++... |++++|+..++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 56678889999999999999988762 23322 445677777788766 8999999999999999999875
Q ss_pred h---HHHHHHHHHhCCChH
Q 007077 529 F---HTLLANIYASANRWE 544 (619)
Q Consensus 529 ~---~~~l~~~~~~~g~~~ 544 (619)
+ ...+..++.+.|+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 344454544444443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=5.9e-10 Score=105.55 Aligned_cols=204 Identities=8% Similarity=-0.020 Sum_probs=148.1
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCChHHH
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGKINKA 406 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A 406 (619)
++++|...+... ...|...|++++|...|.+..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477887777665 44678889999999988876531 2 46889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 007077 407 LELFSQMISGGA---KPD--DITFIGVLSACSHG-GLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 407 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 476 (619)
+..|++.++... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999875311 111 34788888899986 9999999999998764321111 3568889999999999999
Q ss_pred HHHHHhhCCCC-CCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hCCCh
Q 007077 477 AEELIRKIPNE-NNEII-----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF-----HTLLANIYA--SANRW 543 (619)
Q Consensus 477 A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 543 (619)
|++.|++.... +..+. ...|..+..++...|++++|+..++++.+++|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987622 22221 1257778888999999999999999999999986653 344566664 45678
Q ss_pred HHHHHHHHHHH
Q 007077 544 EDVTNVRQKMK 554 (619)
Q Consensus 544 ~~A~~~~~~m~ 554 (619)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88887776543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=2.6e-09 Score=100.35 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=112.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----------
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINEN------RI-TVDAVVATALIEMYAKCGLIEKALEIFYELREK---------- 385 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 385 (619)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+++.+.
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444445555554444444332 11 122334555566666666666666665554321
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----
Q 007077 386 -DAASWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY----- 452 (619)
Q Consensus 386 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 452 (619)
...++..+...|...|++++|...|++..+. +-.|+ ..++..+...+...|++++|..+++...+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2345666777777777777777777776654 11333 3467777788888888888888888776531
Q ss_pred -CCCCC-hhHHHHHHHHHHh------cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 453 -QIQPK-LEHYGCLIDLLGR------AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 453 -~~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
...+. ...|..+...+.. ...+.++...++... ...+....++..+...+...|++++|...++++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2334334333333 233555555555554 234455667888999999999999999999988765
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=4.2e-09 Score=97.44 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=126.8
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+...++...+.+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 34455555777788888888888888887643 245667777888889999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 415 SGGAKP-----DDITFIGVLSAC--SHGG--LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 415 ~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+. .| +..+...+..++ ...| +..+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 67 355666666553 3333 888999999998654 3553333344447888999999999987654
Q ss_pred CC-C--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 486 NE-N--------NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 486 ~~-~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.. | ++.+..++..++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 31 0 23445556566666666777 8889999999999998873
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.3e-10 Score=97.62 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=106.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
...+...|++++|++.+++.... .|+. ..+..+...|...|++++|.+.|++..+.. +-+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34445567777888877776654 4443 356667777888888888888888877641 334677888888888888
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL-AALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
++++|+..|++... -++.+..+|..+...+.+.|++++|.+. ++++.+++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVE-LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888887762 2344455688888889999998776655 689999999999999888888888775
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=2.6e-09 Score=87.58 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=81.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++... .+.....+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 334444555555555555555555442 1223445555555666666666666666555421 2223344667777777
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7788888888888887777877777778888888888888888888877653
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.3e-08 Score=91.00 Aligned_cols=175 Identities=10% Similarity=-0.032 Sum_probs=137.8
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 007077 375 ALEIFYELRE-KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG----LVDEGRRFFNTMT 449 (619)
Q Consensus 375 A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 449 (619)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4455554443 467778888888888889999999999888775 45566677777777 6 8999999999886
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 007077 450 EVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENNE-IIVPLYGALLSACRI----YGNVDMGEKLAALLE 520 (619)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 520 (619)
+. -+...+..|..+|.. .+++++|+++|++....+.. .....+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356778888888877 88999999999998865442 124458888888888 889999999999998
Q ss_pred ccCCCCcchHHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 007077 521 KIESKDSSFHTLLANIYASA-N-----RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 558 (619)
+. |+++.++..|+.+|... | ++++|.+++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 77777899999999865 3 89999999999988664
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=4.1e-10 Score=94.57 Aligned_cols=124 Identities=11% Similarity=-0.065 Sum_probs=102.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY 506 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (619)
|...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|++.|++... -++.+..+|..+...+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Confidence 34556778999999999988753 3343 45667789999999999999999999873 2444566799999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV-RQKMKE 555 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 555 (619)
|++++|+..|+++.+++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 577765
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=3.8e-08 Score=91.11 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=135.8
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 375 ALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 375 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7788887663 4556667888999999999999999999887753234 45777888999999999999999999976
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 451 VYQIQP-----KLEHYGCLIDL--LGRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 451 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
. .| +-.+...++.+ ....| ++.+|..+|+++.... |+...-..++.++.+.|++++|++.++.+.+
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56 34555556555 33334 9999999999987443 2211233344488999999999999998877
Q ss_pred c----------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 522 I----------ESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 522 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
. +|+++.+...++.+....|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 58899988788878888887 8999999998743
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=8.3e-10 Score=117.45 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=103.1
Q ss_pred HccCcHHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 007077 332 AQLGALEQGKWIHGYIN--------ENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMN 400 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 400 (619)
...|++++|.+.++.+. +. .+.+...+..+..+|...|++++|+..|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666666666666665 22 133445556666666666666666666665542 2455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007077 401 GKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
|++++|+..|++.++. .|+ ...+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655 443 3455555666666666666 66666665431 2234556666666666666666666
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGN-----VDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 528 (619)
.|+++... ++.....|..+..++...|+ .+...+..+....+.+.++.
T Consensus 556 ~~~~al~l-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPT-SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTT-STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhccc-CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 66666522 33334445555555544443 23333333344444444444
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=4e-09 Score=99.37 Aligned_cols=177 Identities=8% Similarity=-0.032 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 372 IEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
.+.....+......+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555555556667778888889999999999999998887 665 45788888899999999999999998865
Q ss_pred hcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--c
Q 007077 451 VYQIQPKLEHYGCL-IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD--S 527 (619)
Q Consensus 451 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 527 (619)
. .|+....... ...+.+.|+.++|++.+++... .++.+...+..+...+...|++++|+..++++.+.+|++ .
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 4554433332 3346677788888888887762 244455569999999999999999999999999999998 8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.++..++.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999999888764
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=7.7e-09 Score=84.67 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777788888888888888877652 234556777777788888888888888887764 234466777788888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
...|++++|.+.++++... .+.....+..+...+...|++++|...++++.+..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8888888888888876632 22334557788888888899999999988888887753
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=5e-09 Score=84.72 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
..+......|.+.|++++|++.|++... -++.+..+|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666655541 123334445556666666666666666666666666666666666666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 007077 539 SANRWEDVTNVRQKMKE 555 (619)
Q Consensus 539 ~~g~~~~A~~~~~~m~~ 555 (619)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=3.7e-09 Score=91.54 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=57.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD--SSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|++.+++... -++.+...+..+...+...|++++|+..++++.+.+|+. +.++..++.++...|+.++|...+++..
T Consensus 93 a~~~~~~al~-~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELA-ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4555555441 123344557888888888888888888888888888864 4578888888888899888888888765
Q ss_pred h
Q 007077 555 E 555 (619)
Q Consensus 555 ~ 555 (619)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=4.6e-09 Score=87.63 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=89.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 453 QIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 453 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.+.|+ ...+..+...+.+.|++++|++.|+++.. -+|.+...|..+..++...|++++|+..|+++.+++|+++.+|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34454 56777888889999999999999998873 24455667999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.++.+|...|++++|.+.+++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998743
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=1.6e-07 Score=88.85 Aligned_cols=164 Identities=9% Similarity=-0.027 Sum_probs=124.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGA-KPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYG 462 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 462 (619)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++.......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 22221 2334566677788999999999998874222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchH
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPN------ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFH 530 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 530 (619)
.+..+|...|++++|++.++++.. ...+....++..+...|...|++++|+..++++.++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999988761 2223334478899999999999999999999998766443 5678
Q ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHh
Q 007077 531 TLLANIYASANR-WEDVTNVRQKMKE 555 (619)
Q Consensus 531 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 555 (619)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998863
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=1.3e-06 Score=88.67 Aligned_cols=373 Identities=9% Similarity=-0.028 Sum_probs=212.5
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CCeecHHHHHHHHHcCCC-hhHHHH
Q 007077 100 WLG-EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMR-FEDAVD 175 (619)
Q Consensus 100 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 175 (619)
+.| ++..|+.+++.++..- |. |+++.+..+|++... |++..|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 3777888888777622 22 889999999988765 777788888877766663 455677
Q ss_pred HHHHhHhcCCCCC-ChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhccCC--hhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 176 VFRRMRQGCNLMP-DEGTVVSTLSACTA----LKNLELGKEIHRYINQELEFT--PIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 176 ~~~~m~~~~~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
+|+......|..| +...|...+..+.. .++.+.+..+++.++.. |.. ...|......-. ......+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFEL-ELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HhccccHHHHHH
Confidence 7877665345433 55566666665442 35677788888888873 322 122222222111 111222222221
Q ss_pred cCCCCCchhHHHHHHHHHh-cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC--C-----hhHHHHHHHHHHHcCCCCC
Q 007077 249 EMPNKNVICWTSMVSGYVN-CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN--R-----FDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~ 320 (619)
+.. ..|.+ ...++++...+.+ .+...|...+.--...+ - .+.+..+|+++.... +.+
T Consensus 148 ~~~-----------~~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~ 212 (493)
T 2uy1_A 148 DTL-----------PIFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYA 212 (493)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHh-----------HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCC
Confidence 100 00000 0001222222221 13334544444322211 0 234667788877643 334
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH-HHHHHhcC------------CCCh
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA-LEIFYELR------------EKDA 387 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~ 387 (619)
...+...+.-+.+.|+.+.|..+++..... |.+...+.. |....+.++. ..+.+... ....
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 556666666677788888888888888877 444433332 2221111111 11111110 0012
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS-HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
..|...+..+.+.+..+.|..+|++. ... .++...|......-. ..++.+.|..+|+...+.++ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45667777777788899999999998 321 223334433222222 23469999999999988642 23456677888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..
T Consensus 363 ~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999999999999842 45668888888888899999999888775
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=3.5e-08 Score=87.93 Aligned_cols=130 Identities=8% Similarity=-0.011 Sum_probs=99.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.+..+|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3888999999999999999999987 565 5688888999999999999999999998752 3347788888888876
Q ss_pred cCC--HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 471 AGL--LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 471 ~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
.|. .+.+...+++... +.+ ....+.....++...|++++|+..++++.++.|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS-PTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C-CCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 653 4556777777652 232 222344556667788999999999999999999754
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=1.2e-08 Score=106.74 Aligned_cols=161 Identities=10% Similarity=-0.052 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007077 369 CGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
.|++++|.+.|++..+. +...|..+...|...|++++|.+.|++..+. .|+ ..++..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987743 5778999999999999999999999999987 555 56888889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhc
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY---GNVDMGEKLAALLEK 521 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 521 (619)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++.... ++.+...+..+...+... |++++|...++++.+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998752 345788999999999999999999999988732 334455688999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 007077 522 IESKDSSFHTLLA 534 (619)
Q Consensus 522 ~~p~~~~~~~~l~ 534 (619)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988777666
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=4e-08 Score=88.86 Aligned_cols=187 Identities=12% Similarity=-0.021 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Chh---hHHH
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINENRITV--DAVVATALIEMYAKCGLIEKALEIFYELRE--K-DAA---SWTS 392 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 392 (619)
...+..+...+.+.|++++|...++.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778899999999999999998864211 135677889999999999999999999764 3 222 4555
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007077 393 IICGLAM------------------NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 393 l~~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 453 (619)
+..++.. .|++++|+..|+++++. .|+.. +...... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999987 67653 2221111 001111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.....+...|.+.|++++|+..|+++.. .|+.+ ....+..+..++.+.|++++|++.++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1223567888999999999999998773 23332 3356888899999999999999999999988888654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=6.7e-08 Score=92.05 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=157.1
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 298 QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 0 11146777777666543 456778888888888
Q ss_pred HHHhcCCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 007077 378 IFYELREK-----D----AASWTSIICGLAMNGKINKALELFSQMISGG---AKPD--DITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 378 ~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.|.+..+- + ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88776531 1 4478888899999999999999999876431 1222 2467788888888 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCccc-HHHHHHHHHHHHHcCCHHHHHH
Q 007077 444 FFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEII-VPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 444 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.|++....+.-..+ ..++..+...|.+.|++++|++.|++... .+..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764321111 45788899999999999999999988762 122111 2256667777888899999999
Q ss_pred HHHHHhccCCCCcch-----HHHHHHHHHhCCChHHHHHH
Q 007077 515 LAALLEKIESKDSSF-----HTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 515 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 549 (619)
.++++. +.|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99876543 33455555 56777666653
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=5.6e-08 Score=103.37 Aligned_cols=147 Identities=14% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 344444555555555555555555555443 232 2344444445555555555555555544321 11234444555
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+|.+.|++++ ++.|++... -++.+...|..+..++...|++++|+..++++.+++|++..++..++.+|..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWS-TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHH-hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 55555555555 555544431 1222233355555555555555555555555555555555555555555443
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.3e-08 Score=82.34 Aligned_cols=117 Identities=8% Similarity=-0.057 Sum_probs=96.1
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 418 AKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 418 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
+.|+. ..+......+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|++.+++... -++.....|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHH
Confidence 45553 46777788888899999999999888764 234577888899999999999999999988773 244556679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+..++...|++++|++.|+++.+++|+++.++..|..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888877653
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=1.5e-08 Score=90.28 Aligned_cols=159 Identities=13% Similarity=0.014 Sum_probs=116.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIG----------------VLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
.....+...|++++|+..|++.++. .|+. ..+.. +..++...|++++|...|++..+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 3445566777777777777777665 5543 34444 7888999999999999999998752
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCCcchHHH
Q 007077 455 QPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN--VDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
+.+...+..+..+|...|++++|++.|++... -+|.+..+|..+...+...|+ .+.+...++++....|.. ..+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHH
Confidence 34578899999999999999999999999873 244455668888888766654 445566666665433322 23566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 007077 533 LANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.++...|++++|...+++..+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 788888899999999999998763
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=7.9e-09 Score=86.31 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|+..|++... .++.+...|..+..++...|++++|+..++++..++|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 55667778888888999999988888762 23445556888888899999999999999999999999999899999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888763
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=5.7e-07 Score=84.21 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HhC---C
Q 007077 301 RFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG--ALEQGKWIHGYINENRITVDAVVATALIEMY----AKC---G 370 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 370 (619)
..++|+.++..+.. +.|+.. .++.--..+...+ +++++...+..++... +-+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33577777777766 344443 3344444444555 6666666666665543 33334444333223 333 4
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc------H
Q 007077 371 LIEKALEIFYELRE---KDAASWTSIICGLAMNGKIN--KALELFSQMISGGAKP-DDITFIGVLSACSHGGL------V 438 (619)
Q Consensus 371 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~------~ 438 (619)
++++++.+++++.+ ++..+|+--.-.+.+.|.++ ++++.++++++. .| |..+|+.........|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 55555555555442 23444444444444555554 555555555544 22 23344443333434333 4
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCCCC--CCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE-AEELIRKIPNE--NNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
+++.+.++.++.. -+-|...|+.+...+.+.|+..+ +.++..+.... ..+.+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 4455554444432 12234444444444444444222 22333333311 1122333344444444444444444444
Q ss_pred HHHHhc-cCCCCcchH
Q 007077 516 AALLEK-IESKDSSFH 530 (619)
Q Consensus 516 ~~~~~~-~~p~~~~~~ 530 (619)
++.+.+ .+|-....|
T Consensus 281 ~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHTTCGGGHHHH
T ss_pred HHHHHhccChHHHHHH
Confidence 444443 444444433
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=6.1e-07 Score=90.98 Aligned_cols=356 Identities=11% Similarity=0.008 Sum_probs=163.9
Q ss_pred cCC-ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-hhhH
Q 007077 166 KCM-RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC-LSEA 243 (619)
Q Consensus 166 ~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 243 (619)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..+...| +...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777787777551 122 888999999988888654 77788888887777663 3444
Q ss_pred HHHhccCCC------CCchhHHHHHHHHH----hcCCHHHHHHHHccCCC-C--Ch-hhHHHHHHHHHHc----------
Q 007077 244 RELFDEMPN------KNVICWTSMVSGYV----NCGQLEKARDLFDRSPV-R--DI-VLWTAMINGYVQF---------- 299 (619)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~---------- 299 (619)
..+|+.... .+...|...+.-+. ..++++.+..+|++... | +. ..|......-...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555554331 34456666666543 23567777778776532 2 11 1222222211111
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--C--c---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 300 ---NRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL--G--A---LEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 300 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+..|..+++++...-...+...+...+.--... + + .+.+..+++.++... +.+..+|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 11222233333322110001111222222221111 0 0 233445555555532 44455566666666666
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---------CCCCC---HHHHHHHHHHHhccCc
Q 007077 370 GLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG---------GAKPD---DITFIGVLSACSHGGL 437 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------g~~p~---~~~~~~ll~~~~~~g~ 437 (619)
|++++|..+|++.... +.... +--.|....+.++. ++.+.+. +..+. ...|...+....+.+.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 6666666666654322 11111 00112221111111 2222111 00011 1234444444444555
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-LLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
.+.|+.+|+.. .. . ..+...|...+..-.+.| +.+.|..+|+..... |+. ...|...+......|+.+.|..+
T Consensus 302 ~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666 21 1 123333333222222222 466666666655421 222 22355555555666666666666
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|+++ +.....|...+..-...|+.+.+..+++++.
T Consensus 377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6665 2234445555555555566666666665554
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=4.2e-08 Score=102.52 Aligned_cols=147 Identities=11% Similarity=-0.031 Sum_probs=101.4
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 334 LGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888877653 45677788888888888888888888887664 35667888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhhCC
Q 007077 411 SQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GLLDEAEELIRKIP 485 (619)
Q Consensus 411 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 485 (619)
++..+. .|+ ...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888876 454 5677788888888888888888888887642 33467778888888888 88888888888776
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=6.9e-08 Score=86.39 Aligned_cols=134 Identities=13% Similarity=-0.034 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
..+..+...+...|++++|+..|++.. .|+..++..+...+...|++++|...|+...... +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 345667777888899999988888763 6677788888888888889999988888887642 3456778888888
Q ss_pred HHhcCCHHHHHHHHhhCCC-CCCc--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 468 LGRAGLLDEAEELIRKIPN-ENNE--------------IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~-~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
|...|++++|++.|++... .+.. .....|..+..++...|++++|...++++.++.|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8888888888888887652 1211 1235677888888888888888888888888888764
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.1e-07 Score=89.87 Aligned_cols=168 Identities=7% Similarity=-0.072 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI--QPK--L 458 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 458 (619)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...++.......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888776322111 12334555667888999999999887753111 122 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIP----NENNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK------D 526 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 526 (619)
.+|+.+...|...|++++|++.++++. ..++.+ ...++..+...|...|++++|+..++++.++.+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999998765 122222 2257889999999999999999999999766533 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 007077 527 SSFHTLLANIYASANRWEDV-TNVRQKMKE 555 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 555 (619)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45688999999999999999 777887653
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=5.7e-08 Score=91.46 Aligned_cols=158 Identities=9% Similarity=-0.057 Sum_probs=124.5
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHH
Q 007077 420 PD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGA 498 (619)
Q Consensus 420 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 498 (619)
|+ ...+..+...+...|++++|...|++..... +.+...+..+..+|.+.|++++|.+.++++... .+.....+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHH
Confidence 44 4567778888899999999999999998752 335778899999999999999999999999743 2222222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEe
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLV 578 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (619)
....+...++.++|+..++++.+.+|+++.++..++.+|...|++++|...++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---------------------- 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---------------------- 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------------------
Confidence 3334677888999999999999999999999999999999999999999999999873
Q ss_pred CCCCCCch--HHHHHHHHHHHHHHHHhccc
Q 007077 579 GDPSHSEM--KEIYSMLDRMAKTLLDSKQN 606 (619)
Q Consensus 579 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 606 (619)
+|.. ...+..+..++..+.+..+.
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcH
Confidence 3333 56677777777766554433
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=5.7e-08 Score=83.93 Aligned_cols=158 Identities=12% Similarity=-0.007 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA-CS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 433 (619)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566778888889999998888774 36677888888888999999999988887665 4443322221111 11
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
..+....|...+++..+. .| +...+..+..++...|++++|.+.|+++... |.......+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233467788887764 34 4778888999999999999999999887633 333334468888889999999999
Q ss_pred HHHHHHHHh
Q 007077 512 GEKLAALLE 520 (619)
Q Consensus 512 a~~~~~~~~ 520 (619)
|...|+++.
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=4.4e-06 Score=78.15 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChhhHHHHHHHH----HhC---CChH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCG--LIEKALEIFYELRE---KDAASWTSIICGL----AMN---GKIN 404 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~ 404 (619)
.++|......++... |.+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 357788888887765 556777888888888888 99999999998774 3566777665555 555 7899
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HH
Q 007077 405 KALELFSQMISGGAKP-DDITFIGVLSACSHGGLVD--EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL------LD 475 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 475 (619)
+++.+++++.+. .| +-.+|..-.-.+.+.|.++ ++.++++.+.+.. +-|...|+.-..++.+.|. ++
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999987 45 4567777777777778887 9999999998752 4567788877777777776 89
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM-GEKLAALLEKIE---SKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
++++.++++.. -++.+...|+.+...+.+.|+... ...+++++.+++ |.++.++..++++|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~-~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIV-KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH-HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988873 355666679999888888887444 566788887776 8899999999999999999999999999
Q ss_pred HHHh
Q 007077 552 KMKE 555 (619)
Q Consensus 552 ~m~~ 555 (619)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=3e-07 Score=82.02 Aligned_cols=160 Identities=9% Similarity=-0.080 Sum_probs=98.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK-DAASWTSIICGLAMNG----KINKALELFSQMISGGAKPDDITFIGVL 429 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 429 (619)
++..+..|...|...+++++|...|++..+. ++.++..|...|.. + ++++|+..|++..+.| +..++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445555555555566666666666655433 45555666666655 4 6777777777776554 344555566
Q ss_pred HHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CCcccHHHHH
Q 007077 430 SACSH----GGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGR----AGLLDEAEELIRKIPNE-NNEIIVPLYG 497 (619)
Q Consensus 430 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 497 (619)
..|.. .+++++|..+|++..+. .|+ ...+..|..+|.. .+++++|.+.|++.... +++. .+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~---a~~ 166 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY---AEY 166 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH---HHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH---HHH
Confidence 66655 66777777777776542 332 5666777777776 67777888777776543 2222 366
Q ss_pred HHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007077 498 ALLSACRIY-G-----NVDMGEKLAALLEKIES 524 (619)
Q Consensus 498 ~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 524 (619)
.|...|... | ++++|...++++.+...
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666666543 2 77888888877766543
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=1.1e-07 Score=90.69 Aligned_cols=200 Identities=7% Similarity=-0.059 Sum_probs=151.6
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
..|++++|.+++++..+..- .. .+...+++++|...|.++ ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 45778889888888766421 11 011158899998887763 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007077 413 MISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRK 483 (619)
Q Consensus 413 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (619)
..+. |-.+. ..+|..+...|...|++++|...|++....+.-..+ ..++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 247888888999999999999999987764321111 3577888999988 999999999987
Q ss_pred CCC----CCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhCCChHHHHHHHHH
Q 007077 484 IPN----ENNE-IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS------SFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 484 ~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
... .++. ....++..+...+...|++++|+..++++.++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 652 1111 1245688899999999999999999999998876554 2567788889999999999999999
Q ss_pred HH
Q 007077 553 MK 554 (619)
Q Consensus 553 m~ 554 (619)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=1e-07 Score=79.00 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|++.|++... .++.+...|..+..++...|++++|+..++++..++|+++.++..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45566677788888889998888888762 23445556888888899999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888763
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=1.1e-07 Score=81.01 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
.+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|.+.+++.... .+.+...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 4555566667777777777777777653 1334667777788888888888888888776622 333455688888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHH--HHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLL--ANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|...++++.+..|.++..+..+ +..+...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877444 4448888999999999987753
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=7.6e-08 Score=77.81 Aligned_cols=98 Identities=5% Similarity=-0.176 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|++.|++.... ++.+...|..+..++...|++++|+..++++.+++|+++.++..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345666777888888888888888877622 3344566888888999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988763
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=1.5e-07 Score=86.02 Aligned_cols=137 Identities=13% Similarity=0.026 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLID 466 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 466 (619)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .|+ ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHH
Confidence 44566677788888888888877765 46554555555677788888888888875532 222 235677788
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCC-cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENN-EI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++.+.|++++|++.|++....+. +. ....+.....++.+.|+.++|...|+++...+|+ +.++..|.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88888999999999888764433 22 3345677777888899999999999999998888 66454443
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=3.4e-07 Score=81.83 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGL 437 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 437 (619)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566777788888888888888877778888888888888888888888888877762 2235577777788888888
Q ss_pred HHHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 438 VDEGRRFFNTMTEVYQIQP--------------KLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+++|...|+...+...-.+ ....+..+..+|.+.|++++|.+.|++...
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888776421111 126777788888888888888888887663
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1.9e-07 Score=74.93 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
.++..+...+...|++++|...++.+.... +.+...+..++..+.+.|++++|...++++... .+.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHH
Confidence 456666667777777777777777776541 334566777777778888888888887776522 23344557888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999998888988888888887776544
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=1.5e-07 Score=76.40 Aligned_cols=118 Identities=7% Similarity=-0.045 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|.+.+++.... .+.+...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHH
Confidence 45666666777777778887777777654 1335667777788888888888888888776622 23345568888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+...|++++|...++++.+..|+++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998899999998888875
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=1.4e-07 Score=76.83 Aligned_cols=117 Identities=6% Similarity=-0.047 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|++.+++.... .+.....|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 35555556666666666666666665532 1224556666666666677777777666665521 22344457777788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+...|++++|+..++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888776654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=8.7e-08 Score=89.82 Aligned_cols=188 Identities=11% Similarity=-0.061 Sum_probs=119.0
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
+...+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344555666677777777777777776542 35667777777777788888888888777765 444 456777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
++...|++++|...|+...+...-.+. ...+..+ ...+...+.. ..... .+..+. ....+..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~-~~~~~~---i~~~l~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERR-IHQESE---LHSYLTRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTC-CCCCCH---HHHHHHHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHH-HhhhHH---HHHHHHHH-HHH
Confidence 777888888888888776653211110 1111111 1222222222 11222 222333 22222222 368
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHh
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIYASA-NRWEDVTNVRQKMKE 555 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 555 (619)
++++|.+.++++.+++|++......+...+.+. +++++|.+++.++.+
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999888778888777776 778999999988865
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.5e-07 Score=81.44 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCH--H
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGNV--D 510 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 510 (619)
..|++++|...++...... +.+...|..+..+|...|++++|...|++.... .+.+...|..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4455666666666655431 234556666666666666666666666655421 12233345566666 5566776 7
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|+..++++.+..|+++.++..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777777776777777777777777777777776653
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=5.7e-06 Score=78.01 Aligned_cols=161 Identities=10% Similarity=-0.019 Sum_probs=120.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DA------ASWTSIICGLAMNGKINKALELFSQMISGGAK-PD----DITFIG 427 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 427 (619)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999886642 11 12334666777788999999999999884322 22 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-CcccHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQ----IQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN----EN-NEIIVPLYG 497 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~ 497 (619)
+...|...|++++|..+|+.+.+... ..+. ..++..+..+|.+.|++++|++.+++... .+ ......+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999875221 1111 34788899999999999999999987651 11 222355688
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHhcc
Q 007077 498 ALLSACRIYGN-VDMGEKLAALLEKI 522 (619)
Q Consensus 498 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 522 (619)
.+..++...|+ +++|...++++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999988643
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=1.7e-07 Score=90.38 Aligned_cols=145 Identities=12% Similarity=-0.018 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
...|..+...|.+.|++++|+..|++.++. .|+...+ ..+.+... .. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-QA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-HH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-HH--------HHHHHHHHHHH
Confidence 445566666666666666666666666654 2322100 00111110 00 01357888899
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDV 546 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 546 (619)
+|.+.|++++|++.++++... ++.+...|..+..++...|++++|+..|+++.+++|+++.++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888732 4445667999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 007077 547 -TNVRQKMK 554 (619)
Q Consensus 547 -~~~~~~m~ 554 (619)
...+++|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=1e-07 Score=87.09 Aligned_cols=185 Identities=9% Similarity=-0.016 Sum_probs=134.8
Q ss_pred hCCCHHHHHHHHHhcCCC---ChhhHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 007077 368 KCGLIEKALEIFYELREK---DAASWTSI-------ICGLAMNGKINKALELFSQMISGGAKPDD--------------- 422 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 422 (619)
..++...|.+.|.++... ....|..+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777777777776532 45566666 4555555556666666665544 23332
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc-HH
Q 007077 423 -------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII-VP 494 (619)
Q Consensus 423 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 494 (619)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....+++.. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334566788899999999999988642 46544667777789999999999999997764443321 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIE--SK-DSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|...++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888889999999999999999997543 44 44567899999999999999999999998743
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.4e-07 Score=79.68 Aligned_cols=132 Identities=9% Similarity=-0.011 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-Cc-ccH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ---IQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN----EN-NE-IIV 493 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~-~~~ 493 (619)
++..+...+...|++++|...+++...... ..| ....+..+...|...|++++|.+.+++... .+ ++ ...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444455555555555555555555443111 111 133455566666666666666666655431 12 11 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--Cc----chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESK--DS----SFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..+...+...|++++|+..++++.++.+. ++ .++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34666666777777777777777777644321 11 2246777778888888888877777653
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.59 E-value=3.9e-07 Score=77.36 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---------C--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE---------N--------NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+......+.+.|++++|++.|++.... + ++....+|..+..++.+.|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344445555555555555555443311 1 23344568889999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchH-HHHHHHHHHHHHHHH
Q 007077 524 SKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMK-EIYSMLDRMAKTLLD 602 (619)
Q Consensus 524 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 602 (619)
|+++.+|..++.+|...|++++|...+++..+. +|... .+...+..+...+++
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998762 45555 677788888887776
Q ss_pred hccc
Q 007077 603 SKQN 606 (619)
Q Consensus 603 ~~~~ 606 (619)
..+.
T Consensus 148 ~~~~ 151 (162)
T 3rkv_A 148 KKAD 151 (162)
T ss_dssp HTTS
T ss_pred HHHH
Confidence 6544
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=4.4e-07 Score=73.82 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.+...+..+...+.+.|++++|.+.+++.... .+.+..+|..+...+...|++++|+..++++.+..|+++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34677888999999999999999999987733 44456679999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998763
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=2.7e-07 Score=76.75 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=87.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 418 AKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 418 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
+.|+. ..+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|++.|++...- +|.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHH
Confidence 35554 467778888899999999999999998742 345788899999999999999999999988721 33344459
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..+..++...|++++|+..|+++.++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998765
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=3.1e-08 Score=87.57 Aligned_cols=171 Identities=8% Similarity=-0.047 Sum_probs=105.0
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
+......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++.++. .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444556666666666543321 3455666777777888888888888877764 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
.-. .. .....|..+..+|.+.|++++|+..+++.... ++.....+..+..++...|++++|+..++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 00 01356777888888999999999998887632 3445566889999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhCCChHHHH-HHHHHHHh
Q 007077 520 EKIESKDSSFHTLLANIYASANRWEDVT-NVRQKMKE 555 (619)
Q Consensus 520 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 555 (619)
.++.|+++.++..++.++...|+.+++. ..+..|..
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888888777 55555544
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=1.3e-07 Score=75.59 Aligned_cols=97 Identities=9% Similarity=-0.112 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+..+...+.+.|++++|+..|++... .++.+...|..+..++...|++++|+..++++.+++|+++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ-KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455677788899999999999988873 2444566688899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCC
Q 007077 540 ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 540 ~g~~~~A~~~~~~m~~~~ 557 (619)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987643
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=1.8e-07 Score=77.93 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=88.0
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 410 FSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
|+++... .|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|...|++++|++.|++....
T Consensus 10 ~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 10 IAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp HHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 4444433 5543 46666777888888899998888888764 2345777888888899999999999999887622
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
++.+...|..+..++...|++++|+..++++.++.|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 233344588888999999999999999999999999888743
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=3.7e-06 Score=79.28 Aligned_cols=165 Identities=8% Similarity=-0.021 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC---C------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK---D------AASWTSIICGLAMNGKINKALELFSQMISGGA---KPD--DI 423 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 423 (619)
.+...+..+...|++++|.+.+.+..+. . ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344566778888888888888765421 1 12234456667788899999999998875421 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCCcccH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPN-----ENNEIIV 493 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 493 (619)
+++.+...|...|++++|...+++..+.....|+ ..++..+..+|.+.|++++|++.+++... .......
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988732211222 25788889999999999999999987651 1112225
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007077 494 PLYGALLSACRIYGNVDMG-EKLAALLEKI 522 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 522 (619)
.+|..+...+...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5688888999999999999 7778877643
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=2.4e-07 Score=72.74 Aligned_cols=100 Identities=11% Similarity=-0.069 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 535 (619)
...+..+...+.+.|++++|...+++.... .+.+...|..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455666777778888888888888776522 2334456888888888999999999999999999998 8888899999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCC
Q 007077 536 IYASA-NRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 536 ~~~~~-g~~~~A~~~~~~m~~~~~ 558 (619)
+|... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=9.2e-07 Score=70.00 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+..++..+...|++++|.+.+++.... .+.+...|..+...+...|++++|...++++.+..|+++..+..++.+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3344444444555555555555444311 112233344455555555555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHh
Q 007077 540 ANRWEDVTNVRQKMKE 555 (619)
Q Consensus 540 ~g~~~~A~~~~~~m~~ 555 (619)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=8.5e-07 Score=78.40 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=97.1
Q ss_pred hCCCHHHHHH---HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 368 KCGLIEKALE---IFYELREKDAASWTSIICGLAMNGKINKALELFSQMIS----GGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 368 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223455666677777777777777777777654 121222 235666667777888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcc-cHHHHHHHHHHHHHcCCH
Q 007077 440 EGRRFFNTMTEVYQIQP-K----LEHYGCLIDLLGRAGLLDEAEELIRKIP----NENNEI-IVPLYGALLSACRIYGNV 509 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~ 509 (619)
+|...+++......-.+ + ...+..+...+...|++++|.+.+++.. ..+++. ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888777655322122 2 3456677778888888888888887654 111211 223456777788888999
Q ss_pred HHHHHHHHHHhccC
Q 007077 510 DMGEKLAALLEKIE 523 (619)
Q Consensus 510 ~~a~~~~~~~~~~~ 523 (619)
++|...++++.++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888776543
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=5.2e-07 Score=74.00 Aligned_cols=100 Identities=9% Similarity=0.030 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.+...+..+...+...|++++|+..|++.... ++.+...|..+...+...|++++|+..++++.++.|+++.++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45677788888888888888888888876622 33345568888889999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.1e-06 Score=70.29 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+...|++++|.+.++++... .+.+..++..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888999999999999999999988732 3334566899999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998763
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=3.5e-07 Score=77.84 Aligned_cols=110 Identities=7% Similarity=-0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLS 501 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 501 (619)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 3466667777777888888888888777642 234667777777777788888888777776622 3334555777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++...|++++|+..++++.++.|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777778888888888888777777777544333
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=2.8e-07 Score=74.44 Aligned_cols=95 Identities=6% Similarity=-0.065 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS-------FHTL 532 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 532 (619)
.+..+...+.+.|++++|++.|++... -+|.+..+|..+..+|...|++++|+..+++++++.|++.. +|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE-LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 456677778888888888888877662 23444556888888888888888888888888888877653 4667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 007077 533 LANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++.+|...|++++|++.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888888888888888765
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=1.1e-06 Score=69.57 Aligned_cols=112 Identities=12% Similarity=-0.001 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...++..... .+.+...+..+..++.+.|++++|.+.+++.... .+.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 34555666666777777777777776653 1234666777777777778888887777766522 23344557888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+...|++++|...++++.+..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88899999999999999999898888777766553
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.1e-06 Score=71.13 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
+...+..+...+...|++++|.+.+++.... .+.+...|..+...+...|++++|+..++++.+..|+++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3567788889999999999999999987632 333456688999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 007077 537 YASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~ 556 (619)
|...|++++|.+.+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998763
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=2.2e-06 Score=80.24 Aligned_cols=188 Identities=13% Similarity=-0.008 Sum_probs=105.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC
Q 007077 324 LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMN 400 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 400 (619)
+..+...+...|++++|...+..+.+.. +.+...+..+..+|.+.|++++|...+++..+. +...+..+..+|...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444432 335566667777777777777777777776542 556777778888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007077 401 GKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
|++++|+..|++..+. .|+.. .+...+.... ....+... ...... ..+++......+...+ .|++++|++
T Consensus 86 g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp TCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 8888888888887764 33210 1111111111 11111121 112222 4445555544444433 688889988
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIY-GNVDMGEKLAALLEKI 522 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 522 (619)
.+++... .++.+......+...+... +.+++|.++|+++.+.
T Consensus 157 ~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHE-GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGT-TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8887763 2444433444444444444 6788888888888653
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=6.2e-07 Score=77.41 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=98.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH-
Q 007077 398 AMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL-LGRAGLL- 474 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 474 (619)
...|++++|+..+++..+. .| +...+..+...+...|++++|...|+...... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 4567888888888888776 44 45678888888889999999999999887652 3456677788888 7788998
Q ss_pred -HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 475 -DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 475 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
++|...++++... ++.+...|..+...+...|++++|...++++.+..|+++...
T Consensus 97 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887632 334455688888999999999999999999999999987643
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=1.8e-07 Score=82.55 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=103.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc---c-----------HHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI---I-----------VPLYGA 498 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~-----------~~~~~~ 498 (619)
..|.++.+.+.|+..... .......+..+...+.+.|++++|++.|++... .+..+ . ..+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433221 011234566677778888888888888877652 11111 1 256888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEe
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLV 578 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (619)
+..++...|++++|+..++++.++.|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------- 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------------- 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999998762
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 579 GDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 579 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+|....++..+..+...+.+..+..
T Consensus 152 ----~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 ----NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ----STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888887776655443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.5e-07 Score=71.20 Aligned_cols=113 Identities=10% Similarity=-0.080 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+......+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 34555666667777777777777777653 1334667777777888888888888888776622 33345568888888
Q ss_pred HHHcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAALLEKIE------SKDSSFHTLLANIYA 538 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 538 (619)
+...|++++|+..++++.+++ |.++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888899999999999988888 777776666665543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=7.1e-07 Score=73.78 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=83.7
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHH
Q 007077 419 KPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYG 497 (619)
Q Consensus 419 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 497 (619)
.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++.... ++.+...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHH
Confidence 4443 35556666777888888888888887764 1335677788888888888888888888877622 233344588
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
.+..++...|++++|+..++++.++.|+++.......
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8888899999999999999999999998887544433
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.6e-06 Score=70.67 Aligned_cols=111 Identities=14% Similarity=-0.045 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGA 498 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 498 (619)
..+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|++.+++.... .+.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHH
Confidence 3444555555555555555555555542 2343 445556666666666666666666655421 2223445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+..++...|++++|...++++.++.|+++.++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777777778888888888888777777777666555543
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=1.6e-06 Score=73.77 Aligned_cols=95 Identities=18% Similarity=0.042 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
...|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...|+...+.. +.+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344555555666666666666666665554 33 33455555555666666666666666655431 22345555566
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~ 485 (619)
.+|.+.|++++|.+.|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 66666666666666665544
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.6e-06 Score=69.80 Aligned_cols=100 Identities=11% Similarity=-0.045 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII---VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
.+...+..+...+...|++++|++.|++.... .+.+ ...|..+...+...|++++|+..++++.+..|+++.++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34677888999999999999999999988743 2222 5668889999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 007077 533 LANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+|...|++++|.+.+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999998763
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=3.9e-06 Score=71.21 Aligned_cols=128 Identities=9% Similarity=-0.109 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
..|..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 44566667777777888888887777765 33 35567777777777888888888888777642 334667777778
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLY--GALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
++...|++++|.+.+++.... .+.+...+ ...+..+...|++++|...+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888776521 12222234 333334667788888888877664
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=0.00021 Score=67.49 Aligned_cols=229 Identities=10% Similarity=0.059 Sum_probs=137.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC-C-C
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMYAKC-G-L 371 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 371 (619)
....+..++|++++.++... .|+.. .++.--..+...+ .++++...+..+.... +-+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34455567788888888774 45443 3444444555566 4788888888877664 55666776666666655 6 7
Q ss_pred HHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc--
Q 007077 372 IEKALEIFYELREK---DAASWTSIICGLAMNGKIN--------KALELFSQMISGGAKP-DDITFIGVLSACSHGGL-- 437 (619)
Q Consensus 372 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-- 437 (619)
+++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++++. .| |..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 78888888887764 4455655555555555555 788888888876 44 45567766666666664
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHhhCCCCC----
Q 007077 438 -----VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL--------------------DEAEELIRKIPNEN---- 488 (619)
Q Consensus 438 -----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~---- 488 (619)
++++.+.++.++.. .+-|...|+.+-..+.+.|+. .+..+...++....
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67777777777753 234466777766666666543 33333434443221
Q ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHH
Q 007077 489 -NEIIVPLYGALLSACRIYGNVDMGEKLAALLE-KIESKDSSFHT 531 (619)
Q Consensus 489 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 531 (619)
...+...+..++..|...|+.++|.++++.+. +.+|-....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 13444555566666666666666666666654 45555544443
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=2.8e-05 Score=73.55 Aligned_cols=214 Identities=14% Similarity=0.055 Sum_probs=156.9
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC-C-ChHHHHHH
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCG-LIEKALEIFYELREK---DAASWTSIICGLAMN-G-KINKALEL 409 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-g-~~~~A~~~ 409 (619)
..++|..+...++... +.+..+|+.--..+...| .+++++.+++.+... +..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457888888888775 556777887777788888 599999999998753 667788777777766 6 89999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------
Q 007077 410 FSQMISGGAKPD-DITFIGVLSACSHGGLVD--------EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL------- 473 (619)
Q Consensus 410 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 473 (619)
++++++. .|. ..+|+.-.-.+.+.|.++ ++.+.++++.+.. +-|...|+....++.+.+.
T Consensus 148 ~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999977 454 556666555555555555 8999999998752 4567888888888888876
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV--------------------DMGEKLAALLEKIE------SKDS 527 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 527 (619)
++++++.++++.. -++.+...|+.+-..+.+.|+. .........+.... +..+
T Consensus 224 ~~eELe~~~~aI~-~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIH-LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 7899999988773 3555666688887777777654 23333333333322 5677
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+...|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7788999999999999999999999864
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=2.8e-07 Score=73.32 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHhhCCCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 471 AGLLDEAEELIRKIPNEN--NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.|++++|+..|++....+ ++.....|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777777666432 344555677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=2.1e-06 Score=69.36 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------cchHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD-------SSFHT 531 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 531 (619)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++++.+..|++ +.++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45667777888888888888888876622 33345568888888999999999999999998888776 77789
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 007077 532 LLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=2e-06 Score=70.39 Aligned_cols=102 Identities=8% Similarity=-0.174 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 421 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...+++.... ++.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHH
Confidence 45566677777777777777777777776541 334667777777888888888888888776621 333455688888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
.++...|++++|+..++++.++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888888877
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=3.3e-06 Score=81.22 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNE-------------IIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
...+..+...|.+.|++++|++.|++.... |.. ....+|..+..++.+.|++++|+..++++.+++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555566666666666666666554411 111 014568999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 524 SKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 524 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
|+++.++..++.+|...|++++|...+++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999873
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=6.5e-06 Score=82.59 Aligned_cols=166 Identities=7% Similarity=-0.089 Sum_probs=109.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGG-AKPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPK-LEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 460 (619)
+..++..|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777655421 112221 22223334456678888888877765421 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----C-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----cc
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP----N-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK---D----SS 528 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 528 (619)
+..++..|...|++++|..++++.. . .+.+....++..++..|...|++++|..+++++....+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788888888999999988887653 1 122334456788888899999999999998888655422 2 23
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456777788888999999888877653
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=4.5e-06 Score=84.07 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=102.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
....|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHH
Confidence 3456667777777778888888877777664 2222110 0 000000 000 1145788889
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|.+.|++++|+..++++... ++.+...|..+..+|...|++++|+..|+++.+++|++..++..++.++.+.|++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988732 444566799999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHH
Q 007077 546 VTN-VRQKMK 554 (619)
Q Consensus 546 A~~-~~~~m~ 554 (619)
|.+ .+++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 874 455554
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=6.2e-06 Score=66.55 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD---SSFHTLLANIYA 538 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 538 (619)
+...+.+.|++++|.+.|+++.. .|..+ ....+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666666655442 11111 11335556666666666666666666666666666 455666666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 007077 539 SANRWEDVTNVRQKMKE 555 (619)
Q Consensus 539 ~~g~~~~A~~~~~~m~~ 555 (619)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666654
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=2.7e-06 Score=69.92 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKI-------ESKDSSFH----TLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.|..+..++.+.|++++|+..+++++++ +|++..+| ...+.+|...|++++|+..+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6888999999999999999999999999 99999999 9999999999999999999999876
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=4.7e-06 Score=70.25 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------Ccc
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK------DSS 528 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 528 (619)
.+..+...+...|++++|.+.+++... .++ ......+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555556666666666666554431 111 112334666677777788888888887777654321 234
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888899999999988888764
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=1.3e-06 Score=88.30 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=92.1
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 430 SACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
..+...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Confidence 34566788888888888877641 234777888888888888888888888887632 444566788889999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHH--HHhCCChHHHHHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANI--YASANRWEDVTNVRQK 552 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 552 (619)
++|++.++++.++.|+++.++..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888887 8888999999988874
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=5.2e-06 Score=64.85 Aligned_cols=101 Identities=14% Similarity=-0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGALLS 501 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 501 (619)
.+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++.... .+. ....|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHH
Confidence 4455555666666666666666666553 1234556666666777777777777777665522 222 4455777777
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCc
Q 007077 502 ACRIY-GNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 502 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 527 (619)
.+... |++++|++.++++....|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777654
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00013 Score=68.55 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHh
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIY---ASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 555 (619)
+.++++++.++++.++.|++...+..++... ...|..+++...+.++.+
T Consensus 252 ~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 252 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4467777788888888887755444433322 235666777777777765
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=3.7e-06 Score=67.06 Aligned_cols=100 Identities=8% Similarity=-0.138 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
+..+...+...|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++.... ++.+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 344455566677777777777776653 1234666677777777777777777777766521 3334445777777777
Q ss_pred HcCCHHHHHHHHHHHhccCCCCc
Q 007077 505 IYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..|++++|+..++++.+..|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 78888888888888877777654
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=6.3e-06 Score=80.22 Aligned_cols=112 Identities=4% Similarity=-0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+.+.|++++|...|++..+.. |.. ......+++. ...+....+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~--------~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA--------KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG--------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH--------HHHHHHHHHHHHHHHH
Confidence 345566666777777777777777766421 000 0000000000 0122223345555555
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666666666666666666666655566666666666666666666655544
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=1e-05 Score=68.07 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 460 (619)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444455555555555555555443210 011 124455555556666666666666665432111111 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+..+...+...|++++|.+.+++... .++ .....++..+...+...|++++|...++++.++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666677777777777777665441 111 2223456677777888888888888888776554
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=4.7e-06 Score=67.26 Aligned_cols=112 Identities=7% Similarity=-0.072 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-Cccc----HHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-N-NEII----VPLYG 497 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~----~~~~~ 497 (619)
.+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|...+++.... + ..+. ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555543 1223445555556666666666666666554411 0 0111 44577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.+...+...|++++|...++++.+..| ++.....+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888777 4554555555443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=1.7e-05 Score=63.84 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=69.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCc-ccHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPK-L---EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNE-IIVPLYGALLS 501 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~~l~~ 501 (619)
+...+...|++++|...|+.+.+.. |+ . ..+..+..++.+.|++++|...+++... .|+. .....+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4445556677777777777666542 22 2 3566677777777777777777776652 1222 11445777778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
++...|++++|...++++.+..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888888888988888888888887765544443
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=2.6e-06 Score=82.00 Aligned_cols=150 Identities=13% Similarity=-0.015 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
...+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777788888899999999999988876 555432 233444444433221 136788888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-HhCCChHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY-ASANRWED 545 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 545 (619)
+|.+.|++++|+..+++... -++.+...|..+..++...|++++|+..++++.+++|+++.++..+..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT-EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988763 24445667888999999999999999999999999999998888888773 44567778
Q ss_pred HHHHHHHHHhCC
Q 007077 546 VTNVRQKMKEMG 557 (619)
Q Consensus 546 A~~~~~~m~~~~ 557 (619)
+...+++|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888886543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=8.2e-06 Score=79.42 Aligned_cols=140 Identities=8% Similarity=-0.032 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ-PKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~ 465 (619)
...|..+...+.+.|++++|+..|++.++. .|... .....+.+ . ... .+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H---HHHHHHHHHHHHHH
Confidence 456888899999999999999999998763 11110 00011111 1 111 2356788899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|.+.|++++|++.+++.... ++.....|..+..++...|++++|+..++++.++.|++..++..+..++...++.++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743 455667799999999999999999999999999999999999999999998888887
Q ss_pred HHHH
Q 007077 546 VTNV 549 (619)
Q Consensus 546 A~~~ 549 (619)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7643
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00064 Score=63.93 Aligned_cols=195 Identities=8% Similarity=-0.057 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC-hHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCG--LIEKALEIFYELRE---KDAASWTSIICGLAMNGK-INKALELF 410 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~A~~~~ 410 (619)
++++..++..+.... +-+..+|+.-..++.+.| .+++++.+++++.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 556777777666777777 48888888888774 366677777777777787 58899999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----
Q 007077 411 SQMISGGAKPD-DITFIGVLSACSHG--------------GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---- 471 (619)
Q Consensus 411 ~~m~~~g~~p~-~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 471 (619)
+++++. .|+ ..+|+.....+... +.++++.+.++..... .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 998887 444 44555554444333 5678888888888764 244577777666666555
Q ss_pred -------CCHHHHHHHHhhCCCCCCcccHHHHHHHHH---HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 472 -------GLLDEAEELIRKIPNENNEIIVPLYGALLS---ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 472 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+.++++++.++++... .|.+...+.+++. +....|..++....+.++.+++|.....|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~-~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL-EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh-CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888887721 2222322322222 112357888999999999999999988787766544
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=7e-05 Score=77.13 Aligned_cols=170 Identities=11% Similarity=-0.038 Sum_probs=136.9
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 007077 371 LIEKALEIFYELRE---KDAASWTSIICGLAMNGK----------INKALELFSQMISGGAKPD-DITFIGVLSACSHGG 436 (619)
Q Consensus 371 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 436 (619)
..++|++.++++.. .+..+|+.-...+...|+ ++++++.++++.+. .|. ..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34667777777663 355677776666666666 89999999999987 555 457888777888888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc-------
Q 007077 437 --LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-LLDEAEELIRKIPNENNEIIVPLYGALLSACRIY------- 506 (619)
Q Consensus 437 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 506 (619)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++.. .++.+..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-HCCCCccHHHHHHHHHHhhccccccc
Confidence 7799999999998752 455778888888888888 89999999999984 4677777888888777663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 507 -------GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 507 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
+.++++.+.++++...+|++..+|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=3.7e-06 Score=71.20 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS-SFHTLLANI 536 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 536 (619)
...|..+..+|.+.|++++|+..+++... -++.+...|..+..++...|++++|...++++.+++|+++ .+...+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK-REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46788889999999999999999988773 2455566799999999999999999999999999999988 544455443
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=4.6e-06 Score=84.38 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=50.4
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 007077 366 YAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 441 (619)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++.++. .|+ ..++..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555555554432 23445555555555555555555555555544 332 33444445555555555555
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHH--HHhcCCHHHHHHHHh
Q 007077 442 RRFFNTMTEVYQIQPKLEHYGCLIDL--LGRAGLLDEAEELIR 482 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 482 (619)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544431 1112233333333 444455555555544
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=3.7e-05 Score=61.78 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
|..+..++...|++++|++.|++.+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334444455555555555555555443
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=1.1e-05 Score=81.15 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999999999999999999999999999873
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=9.8e-06 Score=77.95 Aligned_cols=155 Identities=10% Similarity=-0.048 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 435 (619)
...+..+...+.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788889999999999999998764322211 1223334444433221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCHHHHHH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGNVDMGEK 514 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 514 (619)
|++++|...++...... +.+...|..+..+|...|++++|.+.|++.... ++.+..++..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988642 345778889999999999999999999998732 23333345555555 344567788888
Q ss_pred HHHHHhccCCCCcc
Q 007077 515 LAALLEKIESKDSS 528 (619)
Q Consensus 515 ~~~~~~~~~p~~~~ 528 (619)
.|+++.+..|.++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999998887764
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=2.7e-06 Score=67.47 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=62.3
Q ss_pred cCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQ-IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
.|++++|+..|++..+... -+.+...+..+..+|.+.|++++|++.|++.... ++.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777766664200 1222456677777777888888888887776622 3333455777888888888888888
Q ss_pred HHHHHHhccCCCCcchH
Q 007077 514 KLAALLEKIESKDSSFH 530 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~ 530 (619)
..++++.+..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888887643
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=7.9e-07 Score=69.67 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFH 530 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 530 (619)
+...+..+...+.+.|++++|++.|++.... .+.+...|..+..++...|++++|+..++++.++.|++ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4556777888888888888888888877622 33345568888999999999999999999999999998 6667
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 007077 531 TLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 7788888877777766655443
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.7e-05 Score=77.04 Aligned_cols=162 Identities=12% Similarity=0.023 Sum_probs=117.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPD----------------DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK 457 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 457 (619)
...+.+.|++++|++.|.++.+...... ..++..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888877522211 124677889999999999999999998765333333
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----
Q 007077 458 L----EHYGCLIDLLGRAGLLDEAEELIRKIP-----NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE----- 523 (619)
Q Consensus 458 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 523 (619)
. .+.+.+...+...|++++|.+++++.. .........++..+...+...|++++|..+++.+....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223344455567899999999887654 12233335568889999999999999999999885432
Q ss_pred -CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 524 -SKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 524 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
|....++..++.+|...|++++|...+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345688999999999999999999998764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=1.4e-05 Score=65.68 Aligned_cols=76 Identities=14% Similarity=-0.073 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CCCcccHHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN------ENNEIIVPLY----GALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.|..+..++.+.|++++|+..+++... +-++.....| .....++...|++++|+..|+++.++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 666777777777777777777666552 1134455568 899999999999999999999999999999886
Q ss_pred HHHHHH
Q 007077 530 HTLLAN 535 (619)
Q Consensus 530 ~~~l~~ 535 (619)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 654443
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=5.4e-05 Score=76.00 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=94.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQ--IQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGA 498 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 498 (619)
+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ....+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777776654321 1222 4567788888888888888887776543 3445556778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 499 LLSACRIYGNVDMGEKLAALLEK-----IESKDSSF---HTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
|...|...|++++|+.+++++.+ ++|++|.+ ...+..++.+.|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 56777654 3577888999999999999999998643
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=2.5e-05 Score=59.64 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+...|..+...+...|++++|+..++++.+++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334556888899999999999999999999999999999999999999999999999999998875
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.95 E-value=1.9e-05 Score=58.95 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+...|++++|++.+++.... .+.+...|..+...+...|++++|...++++.+++|+++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456677777888888888888888776522 2334456888888888999999999999999999999888888888887
Q ss_pred HhCC
Q 007077 538 ASAN 541 (619)
Q Consensus 538 ~~~g 541 (619)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00011 Score=57.15 Aligned_cols=100 Identities=7% Similarity=-0.106 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCE
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGI 572 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 572 (619)
...|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+......
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE----------- 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc-----------
Confidence 456888899999999999999999999999999999999999999999999999999999987432110
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccccccCc
Q 007077 573 IHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNAMEGDN 612 (619)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 612 (619)
........+..+...+..+.+........++
T Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 ---------HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0001255666777777777766555444443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.89 E-value=4.4e-05 Score=60.04 Aligned_cols=79 Identities=8% Similarity=-0.086 Sum_probs=60.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|++.|++... .++.+...|..+...+...|++++|+..++++.+.+|+++.+|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLA-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHT-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555442 23334556888888888888888888888888888888888888888888888888888888888765
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=5.6e-05 Score=75.91 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHH
Q 007077 467 LLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SFHT 531 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 531 (619)
.+...|++++|+.++++.. ....+....+++.|..+|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999988886543 334555677899999999999999999999999853 345555 4578
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
.|+.+|..+|++++|..++++..+... ... ...||...++..++.+.+.++.+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875211 011 1259999999999999887777655443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=1.2e-05 Score=65.88 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCC
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASAN-----------RWEDVTNVRQKMKEMG 557 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 557 (619)
+++|+..|+++++++|++..+|..++.+|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999998875 8999999999988743
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00025 Score=57.73 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
+...|...+..++|.+.|++....+++.. +..|...|.. .+++++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a---~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNG---CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 33344444444444444444433322222 4444444444 45555555555555443 344455556666665
Q ss_pred ----CCChHHHHHHHHHHHhCC
Q 007077 540 ----ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 540 ----~g~~~~A~~~~~~m~~~~ 557 (619)
.+++++|.+++++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 566666666666655544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00029 Score=52.19 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34568888889999999999999999999999999999999999999999999999999998763
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.00039 Score=71.58 Aligned_cols=152 Identities=14% Similarity=-0.008 Sum_probs=125.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGL----------VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
....++|++.+++++.. .|+.. .|+.--.++...|+ ++++.+.++.+.+. -+.+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33456889999999987 77754 56665556666666 89999999999875 245678888888888
Q ss_pred HhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-----
Q 007077 469 GRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-NVDMGEKLAALLEKIESKDSSFHTLLANIYASA----- 540 (619)
Q Consensus 469 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 540 (619)
.+.| +++++++.++++.. -++.+..+|+.-...+.+.| .++++.+.++++.+.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~-~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLE-ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHh-hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 8999 77999999999984 46667778998888889999 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHHhC
Q 007077 541 ---------NRWEDVTNVRQKMKEM 556 (619)
Q Consensus 541 ---------g~~~~A~~~~~~m~~~ 556 (619)
++++++.+.+++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhh
Confidence 5678999998888653
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.66 E-value=0.00025 Score=52.79 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 490 EIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.+...+..+..++...++ .++|...++++.+++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445558888888765555 79999999999999999999999999999999999999999999987654
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00019 Score=70.85 Aligned_cols=119 Identities=8% Similarity=0.062 Sum_probs=88.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---ch
Q 007077 465 IDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SF 529 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 529 (619)
+..+.+.|++++|++++++.. ....+....+++.+..+|...|++++|+.+++++++ ..|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888776543 233445566789999999999999999999998853 345554 44
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLL 601 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 601 (619)
+..|+.+|..+|++++|..++++..+--. ... ...||...+++..|.+...+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999875211 111 1259999999999988887775
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.00067 Score=55.16 Aligned_cols=112 Identities=12% Similarity=-0.044 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 007077 401 GKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDE 476 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 476 (619)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44443 666777778888899999988764 466778888888887 789999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 524 (619)
|.++|++....+++.. +..|...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a---~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDG---CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHH---HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHH---HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998876655444 8888888888 8899999999999877643
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00019 Score=56.26 Aligned_cols=83 Identities=8% Similarity=-0.132 Sum_probs=54.7
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+...|+...+. .+.+...+..+...|...|++++|++.+++.... ++.....|..+..++...|++++|+..++++.
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555532 1234566677777777777777777777766521 23344457777778888888888888888887
Q ss_pred ccCCCC
Q 007077 521 KIESKD 526 (619)
Q Consensus 521 ~~~p~~ 526 (619)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=0.00016 Score=69.47 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC------------CCChhhH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELR------------EKDAASW-TSIICGLAMNGKINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 422 (619)
..+-.++-+.|....+++.-..-.+.-. +.+..-+ ..-...|.+++++++++++.++ .++
T Consensus 410 ~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl---- 482 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL---- 482 (624)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC----
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc----
Confidence 3444566666777666654443322221 1122222 2334556777778877766532 122
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
|.-.+...+.+|+.+-+.++++-.++. -+.+.|.+.+-.|...=+++-++++
T Consensus 483 --ykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 483 --YKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --TTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 222344556778888888888777764 3444555555555555566666665
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=6.7e-05 Score=61.51 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHhccCCCCcc
Q 007077 507 GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|++++|++.|+++.+++|++..
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHH
Confidence 6899999999999999999876
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.0048 Score=58.27 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..+...+...|++++|...++++..++|. ...|..++.++.-.|++++|.+.+++...
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444455555555555555555542 33345555555555555555555555544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.00029 Score=69.45 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHhhC-------CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHH
Q 007077 471 AGLLDEAEELIRKI-------PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SFHTLLAN 535 (619)
Q Consensus 471 ~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 535 (619)
.|++++|+.++++. .....+....+++.+..+|...|++++|+.+++++++ +.|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 3344555667899999999999999999999998853 345554 45789999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 007077 536 IYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.001 Score=50.18 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVP-LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.+..+.+.|++++|++.+++.... ++.+.. .|..+..++...|++++|+..++++.+++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566667777777777665521 233334 466666666777777777777777777777666644
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.15 E-value=2.1e-06 Score=82.11 Aligned_cols=260 Identities=14% Similarity=0.097 Sum_probs=116.7
Q ss_pred hhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 123 TYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
+.+|..|..+..+.|++.+|++-|-+ ..|+..|..+|....+.|.+++-+..+...++ ..- ++..=+.++-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHHHHHh
Confidence 34566666666666666666554432 24555666666666666666666666655544 221 22222344445555
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP 282 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (619)
.+++.+-.+++ ..|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 129 TNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp SCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred hCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 54443322221 123333334445555555555555555544432 11111111122222221111111
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
..++.+|-.+-.+|...+++.-|.-.--.+. +.||. ...++.-|...|.+++.+.+++.-.... .....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 1244556666666666665555433332222 11111 1123333445555555555544433211 2344555555
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHhCCChHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREK-----------DAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
.-.|++- ++++-.+.++....+ ....|.-++-.|.+..+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5555553 333444433332211 3445666666666666666553
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0012 Score=49.75 Aligned_cols=89 Identities=7% Similarity=-0.059 Sum_probs=55.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 505 (619)
....+...|++++|...|+.+.+.. +.+.. .+..+..+|...|++++|++.|++... .|..+. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHH-------
Confidence 3455667778888888888777641 23355 677777777788888888888877652 222222 1211
Q ss_pred cCCHHHHHHHHHHHhccCCCCcc
Q 007077 506 YGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+.+.++...+++....+|+++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHHHHHHhccCccccc
Confidence 4566666677666666665543
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.13 E-value=0.0018 Score=49.06 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555555555555544 232 33445555555555555555555555443
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.03 E-value=0.0022 Score=51.90 Aligned_cols=90 Identities=9% Similarity=-0.090 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG---LLDEAEELIRKIPNENNE-IIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 512 (619)
....+++-|.+.... + +++..+...+..++++.+ +.++++.+|++......+ .....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445555555555442 2 356666666666666666 455666666665533211 1233444555566666777777
Q ss_pred HHHHHHHhccCCCCcc
Q 007077 513 EKLAALLEKIESKDSS 528 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~ 528 (619)
++.++.+.+.+|++..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 7777777777766655
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0039 Score=61.40 Aligned_cols=94 Identities=12% Similarity=-0.108 Sum_probs=61.5
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVY--QIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLS 501 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~ 501 (619)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ....+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666665544321 12222 3456667777777777777777666543 3345555667888999
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----cCCCCcc
Q 007077 502 ACRIYGNVDMGEKLAALLEK-----IESKDSS 528 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 528 (619)
.|...|++++|+.+++++.+ ++|++|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 99999999999999988854 4577765
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0062 Score=60.11 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=65.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVY--QIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYG 497 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~ 497 (619)
.+...|++++|..++++..+.. -+.|+ ..+++.++..|...|++++|+.+++++. ....+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444556666666666554321 11222 3456667777777777777777666543 344555666788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEK-----IESKDSSFH 530 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 530 (619)
.|...|...|++++|+.+++++.+ ++|++|.+-
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 899999999999999999988853 567777643
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.82 E-value=0.0043 Score=47.30 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE------NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
+..-+..|+..+.+.|+++.|...|+..... +......++..+..++.+.|+++.|...++++.++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556667777777777777777654411 2344566789999999999999999999999999999998865
Q ss_pred HHHH
Q 007077 531 TLLA 534 (619)
Q Consensus 531 ~~l~ 534 (619)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 4443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.025 Score=53.41 Aligned_cols=151 Identities=11% Similarity=-0.009 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH--hCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cC-----cH
Q 007077 373 EKALEIFYELREKDAASWTSIICGLA--MNGK---INKALELFSQMISGGAKPDD-ITFIGVLSACSH---GG-----LV 438 (619)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g-----~~ 438 (619)
.++...... ...+..+|...+.+.. ..+. ..+|..+|++.++. .|+. ..+..+..++.. .+ ..
T Consensus 181 ~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 333333333 3457888988887654 3333 47899999999988 8874 455555544431 11 11
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (619)
......++........+.+...|..+...+...|++++|...++++..-. ++...|..+...+.-.|++++|...+++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11112222211111335667888888888888899999999999988443 4555577778889999999999999999
Q ss_pred HhccCCCCcc
Q 007077 519 LEKIESKDSS 528 (619)
Q Consensus 519 ~~~~~p~~~~ 528 (619)
+..++|..++
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999998875
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.0078 Score=48.67 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 007077 403 INKALELFSQMISGGAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 477 (619)
...+.+.|.+....|. ++..+...+..++.+++ +.++++.+++...+. . .| +...+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666655543 56666666666666666 556777777777664 2 24 245555666677777777777
Q ss_pred HHHHhhCC
Q 007077 478 EELIRKIP 485 (619)
Q Consensus 478 ~~~~~~~~ 485 (619)
.+.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.2 Score=54.30 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
..++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 56666777777777777665421 112334566788888888876653 56788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 007077 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFY 380 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 380 (619)
.|.++.+ |..+...+...++.+....+-+.....|. ++.-..+|.+.|++++|.+++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 8887743 33444445556666665555544444431 2333444555666666665543
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.55 E-value=0.012 Score=43.53 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+++...+..+..++...++ .++|..++++... -++.++..+..+...+...|++++|+..++++.+.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3456666667776654443 6777777777762 34555555777777788888888888888888888877443
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.027 Score=61.25 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=84.7
Q ss_pred HhCCCHHHHHH-HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 367 AKCGLIEKALE-IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 367 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
...+++++|.+ ++..+. +......++..+.+.|.+++|+++.+. |. .- .......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHHH
Confidence 34566676666 443332 011225556666677777777665421 11 11 22234567777777764
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+. ..+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+.+.....
T Consensus 676 ~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 676 TD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp TT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred Hh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 32 24556778888888888888888888877652 55555555556666655555444433221
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 526 DSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..-..+|.+.|++++|.+++.++
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223333455556666666665544
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.28 E-value=0.049 Score=42.27 Aligned_cols=94 Identities=10% Similarity=-0.080 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCHHH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE---AEELIRKIPNENNE-IIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 511 (619)
.....+.+-|...... + .|+..+-..+..++.++.+..+ ++.+++.......+ ......-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666655543 3 3777788888888998887766 88999988755322 233345566678999999999
Q ss_pred HHHHHHHHhccCCCCcchHH
Q 007077 512 GEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~ 531 (619)
|++.++.+++.+|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999987543
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.31 Score=37.92 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=96.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+. .| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHH
Confidence 34567788888888877654 12233444443333334444455555554332 22 124566666
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....+-.+-. +... ....++.....|+-+.-.+++..+..-.|.++.+...++.+|.+.|+..+|.+++++.-+.
T Consensus 80 Vi~C~~~~n~--~se~---vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINNT--LNEH---VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTC--CCHH---HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc--hHHH---HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6666655542 2222 6667788889999999999999987778888998999999999999999999999999999
Q ss_pred CCcc
Q 007077 557 GVRK 560 (619)
Q Consensus 557 ~~~~ 560 (619)
|++.
T Consensus 155 G~kE 158 (172)
T 1wy6_A 155 GEKE 158 (172)
T ss_dssp TCHH
T ss_pred hhHH
Confidence 8753
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.19 E-value=0.014 Score=52.81 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhC-CChHH
Q 007077 474 LDEAEELIRKIP-NENNEIIVPLYGALLSACRI-----YGNVDMGEKLAALLEKIESKD-SSFHTLLANIYASA-NRWED 545 (619)
Q Consensus 474 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 545 (619)
..+|..++++.. ..|.......|..+...|.. -|+.++|++.|++++++.|+. ...+..+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344555555444 12232244456677766766 488888888888888888864 88888888888774 88888
Q ss_pred HHHHHHHHHhCCCcccC
Q 007077 546 VTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 546 A~~~~~~m~~~~~~~~~ 562 (619)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 88888888876655333
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.57 Score=38.87 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 364 EMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 3566777777777777777777777776532 2333444445566655554
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+-+....+ + -++.-...+.-.|+++++.++|.+... |.--+-.....|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 134444555566777777777766542 222222234466666666666554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.64 Score=38.57 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
+.|+++.|.++.+.+ .+...|..+.......|+++-|...|.+..+ +..+.-.|...|+.+....+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344444444444333 3456677777777777777777777766543 33344444555665555544444
Q ss_pred HHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 007077 347 INENRITVDAVVATALIEMYAKCGLIEKALEIFYEL 382 (619)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 382 (619)
....| -++.-...+.-.|+++++.++|.+.
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44433 1333344455556666666665543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.66 E-value=0.043 Score=42.61 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=75.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCcchHHHHHHHHHhCCChHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM---GEKLAALLEKIE-S-KDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
+..+.+-+.+.... +.++..+--.+.+++.+..+... ++.+++.+...+ | ........|+-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~-~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444433322 33666677788889988887666 888998888776 5 345556788899999999999999
Q ss_pred HHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 549 VRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 549 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
.++.+.+ .+|...++..+..-+.+.+.+.|
T Consensus 96 ~~~~lL~--------------------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 96 YVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp HHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999987 36777777777777777776655
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.25 E-value=0.21 Score=37.67 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIE-------SKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
-...+...+...|++..|...++++.+.. +..+.++..|+.+|.+.|++++|...+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 36788889999999999999999997643 34556789999999999999999999999986
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.85 E-value=1.1 Score=35.00 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=81.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+-+. .|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457777777777776553 23444555555444444545444444443221 121 1233333333
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 377 EIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
..+-.+. .+.......++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3332221 24445556677778888888888888885332 3677778888888888888888888888887765 43
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.83 E-value=4.2 Score=41.81 Aligned_cols=117 Identities=10% Similarity=-0.016 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 401 GKINKALELFSQMISGG-AKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
.+.+.|...+......+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 222221 2223333444555455666666665432 34433444455555678999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
...|+.|...... .....--+..+....|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999853221 222223344466788999999999998875
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.83 E-value=2.2 Score=38.61 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh-----CCCHHHHHHHHHhcCC--C--ChhhHHHHHHHHHhC-CCh
Q 007077 337 LEQGKWIHGYINENRITVD---AVVATALIEMYAK-----CGLIEKALEIFYELRE--K--DAASWTSIICGLAMN-GKI 403 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~--~--~~~~~~~l~~~~~~~-g~~ 403 (619)
...|+..+++.++.. |+ ...+..+...|.+ -|+.++|.+.|++..+ | ++.++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344555555555543 33 4466677777777 3788888888887652 3 366777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHH
Q 007077 404 NKALELFSQMISGGAK--PDDITF 425 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~--p~~~~~ 425 (619)
+++.+.+++.+..... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888887655 554433
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.11 Score=54.32 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
-..-|...|+++.|+++.+++....|.+..+|..|+.+|...|+|+.|+-.+..++
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557789999999999999999999999999999999999999999999999886
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.35 E-value=0.12 Score=41.09 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..++.++|.++|+.+... .......|.....--.++|++..|.+++.++.++.|.+..
T Consensus 72 ei~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 346777788877776422 2223666888877788899999999999999998887765
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.97 E-value=3.8 Score=37.76 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=109.3
Q ss_pred HHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHH----
Q 007077 233 MYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL---- 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---- 308 (619)
.-...|++=+|.+ .|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ-----------~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQ-----------TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHH-----------HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3455678778877 455677788888888888877633 23345566776666554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCc--H---HHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGA--L---EQGKWIHGYINENR--ITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~---~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
.+-..+.+++++......++..+..... . .-.......-.+.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445566888888888888777655321 1 11222222222332 234778888899999999999999988863
Q ss_pred cCCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 382 LREKDAASWTSIICGLAMN---GKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
-...+...+..++.-+... |...++- ...-..++ -|.-.|+...|..+++...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3323455555555444333 3332221 11112222 234567888888888877654
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.95 E-value=0.11 Score=41.30 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=46.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
..++.++|.++|+.+..+...-+.+|...+.--.++|+...|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34799999999999987755556677888888889999999999999998866543
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.95 E-value=0.73 Score=35.89 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 456 PKLEHYGCLIDLLGRAGLL---DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|+..+--.+..++.++.+. .+++.++++............+-.+.-++.+.|++++|++..+.+.+.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344444444444444432 234444444332111112222333444455555555555555555555555544
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.14 E-value=2.6 Score=33.31 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGLLD---EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.|+..+-..+..++.++.+.+ +++.+++..........-...-.|.-++.+.|++++|+++.+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555555555555333 45555555442111112222333444566666666666666666666666654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.29 E-value=0.75 Score=37.48 Aligned_cols=121 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC---C--CCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH-
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR---E--KDA-------ASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDI- 423 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~- 423 (619)
.+..-+..+...|.++.|+-+.+.+. + ++. .+...+.+++...|++..|...|++.++.. .-|...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445666777788888877766543 1 221 145556677777888888888887764321 111111
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII 492 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 492 (619)
+...+. ....... .....++.+.-..+..+|.+.|++++|+.+++.++.+.-.|.
T Consensus 102 ~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred cccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 110000 0000000 002233455556688889999999999999998875544444
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.85 E-value=0.38 Score=37.44 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 417 GAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+-.|+..|-..+..++.++. +..+++.+++.+.+. + | ....+..|.-++.+.|++++|.+..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33566655555555555544 445677888777764 2 4 24556667777888888888888888766
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.45 E-value=1.2 Score=35.09 Aligned_cols=65 Identities=8% Similarity=-0.092 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 420 PDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 420 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|+..+-..+..++.++. +..+++.+++.+.+. .-.-.......|.-++.+.|++++|.++.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44443333333443332 233455555555443 100112333334445555555555555555444
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.16 E-value=0.53 Score=45.58 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCcccCc
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK-----EMGVRKVPG 563 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 563 (619)
...++..+...|+++++...++.+...+|-+...|..++.+|.+.|+..+|++.|+... +.|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556677788999999999999999999999999999999999999999999998875 357777653
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.77 E-value=13 Score=36.42 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=133.8
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhC
Q 007077 299 FNRFDEAVALFREMQII-----RLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM----YAKC 369 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 369 (619)
.|++++|++.+..+.+. +..........++..|...++++...+.+..+.+..-.. ......++.. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788998888766542 234456678888999999999999888777665433222 2222333332 2222
Q ss_pred C--CHHHHHHHHHhcCCC-C---------hhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHH
Q 007077 370 G--LIEKALEIFYELREK-D---------AASWTSIICGLAMNGKINKALELFSQMISG--GAKPDD---ITFIGVLSAC 432 (619)
Q Consensus 370 g--~~~~A~~~~~~~~~~-~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~ 432 (619)
. +.+.-..+.+.+... + ......|...|...|++.+|..++..+... |..+.. ..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 222333444433321 1 122355778888889999999998887642 222221 2556666788
Q ss_pred hccCcHHHHHHHHHHhHHh-cCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 433 SHGGLVDEGRRFFNTMTEV-YQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
...+++.+|..++.++... +...++ ...+..++..+...+++.+|.+. |..+...+...+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~---------------y~e~~~~~~~~~ 252 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY---------------LQEIYQTDAIKS 252 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH---------------HHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH---------------HHHHHhcccccC
Confidence 8888999988888876431 122222 23556667777777888777542 666677777777
Q ss_pred CHHHHHHHHHHHh---ccCCCCcchHHHHHHHHHh
Q 007077 508 NVDMGEKLAALLE---KIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 508 ~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~ 539 (619)
+......++..+. =+.|.++.--..+...+..
T Consensus 253 d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 253 DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc
Confidence 7766555554442 2345544434445544443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.46 E-value=11 Score=34.96 Aligned_cols=180 Identities=12% Similarity=-0.001 Sum_probs=107.0
Q ss_pred HHHhcCCh---hhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 007077 233 MYCKCGCL---SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALF 309 (619)
Q Consensus 233 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 309 (619)
.-...|++ =+|.+ .|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++-
T Consensus 21 ~~I~~G~y~~~YEAHQ-----------~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQ-----------ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHH-----------HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34567787 67776 455677778888888888877632 233455566666555544
Q ss_pred ----HHHHHcCCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 310 ----REMQIIRLKPDKFILVALLTGCAQLGA--LEQGKWIHGYI----NENR--ITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 310 ----~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
+-..+.++++|..+...++..+..... ++. ..+.+.+ .+.| ...++.....+...|.+.+++.+|..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 445667788888887777777765543 221 2222222 2223 33577788889999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 378 IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
.|-.-.++.+..+..++.-+...+... .++.+.-..++. |.-.++...|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 884322222355555554443333211 112222233333 3445788888887776654
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.98 E-value=3.9 Score=29.71 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|.+|... +.|..+++...+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555554432 122222223456788999999999999998999999887654 677888888888777776
Q ss_pred CCCCCHHHHHH
Q 007077 417 GAKPDDITFIG 427 (619)
Q Consensus 417 g~~p~~~~~~~ 427 (619)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.89 E-value=24 Score=38.00 Aligned_cols=246 Identities=11% Similarity=0.021 Sum_probs=113.3
Q ss_pred HHHhcCChhhHHHHhccCCCC----Cc--hhHHHHHHHHHhcCCHHHHHHHHccCC-CCC----------hhhHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPNK----NV--ICWTSMVSGYVNCGQLEKARDLFDRSP-VRD----------IVLWTAMING 295 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 295 (619)
+....|+.++++.+++..... +. ..-..+.-+...+|..+++..++.... .++ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345567777777777766541 11 122233344445555455555443321 111 1112223333
Q ss_pred HHHcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhCC
Q 007077 296 YVQFNR-FDEAVALFREMQIIRLKPDKFILV--ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM--YAKCG 370 (619)
Q Consensus 296 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g 370 (619)
+.-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2455666666554221 1111112 22223345566666667766665532 22333333333 33566
Q ss_pred CHHHHHHHHHhcCC-CChhh-HH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 371 LIEKALEIFYELRE-KDAAS-WT---SIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 371 ~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+.+.+..+++.+.. .++.. |. ++.-+|+..|+......+++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 66666666666542 23222 22 23445667777666666777776541 111112222222333345555555555
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLL-DEAEELIRKIP 485 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 485 (619)
+.+.. ...|.++.-..+.-+....|.. .+|++.+..+.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 54443 2244444444444444444443 56666666665
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.88 E-value=24 Score=37.99 Aligned_cols=252 Identities=11% Similarity=0.001 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHccCCCC----Ch--hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 007077 264 GYVNCGQLEKARDLFDRSPVR----DI--VLWTAMINGYVQFNRFDEAVALFREMQIIRL-------KPDKFILVALLTG 330 (619)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~ 330 (619)
+....|+.+++..+++.-... +. ..=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345677778888888765541 22 2223334445566666678887777654321 0111122222223
Q ss_pred HHccCc-HHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHHhcCCC-Chh--hHHHHHHHHHhCCChH
Q 007077 331 CAQLGA-LEQGKWIHGYINENRITVDA--VVATALIEMYAKCGLIEKALEIFYELREK-DAA--SWTSIICGLAMNGKIN 404 (619)
Q Consensus 331 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~g~~~ 404 (619)
++-.|. -+++...+..+....- +.. ...-+|...+...|+.+....++..+.+. +.. -..++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2344444444443221 111 12223444455677777777776655432 222 2233444555788888
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 007077 405 KALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIR 482 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (619)
.+..+.+.+.... .|... .-..+..+|+..|+.....++++.+... ...++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877641 22221 1223445778888888777788887762 23334433334444555676666667776
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 007077 483 KIPNENNEIIVPLYGALLSACRIYGNV-DMGEKLAALLE 520 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 520 (619)
.+....+ +.+..-..+.-+....|+. .++...+..+.
T Consensus 619 ~L~~~~d-~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHN-AHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSC-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5553333 3332223333333334433 45566666553
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.64 E-value=3.7 Score=29.82 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|.+|.. .+.|..+++...+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 22222222345678899999999999998899999988765 3788888888888888777
Q ss_pred CCCCCHHHHHH
Q 007077 417 GAKPDDITFIG 427 (619)
Q Consensus 417 g~~p~~~~~~~ 427 (619)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.35 E-value=17 Score=35.60 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHccCC-----CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----Hc
Q 007077 268 CGQLEKARDLFDRSP-----VR----DIVLWTAMINGYVQFNRFDEAVALFREMQII-RLKPDKFILVALLTGC----AQ 333 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~ 333 (619)
.|+++.|.+.+-.+. .. .......++..|...|+++...+.+.-+.+. |..+.. ...+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 367888877663221 12 3445777888999999999998888766543 333322 23333333 23
Q ss_pred cCcHHH--HHHHHHHHHH--cC-CCC---ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----C-C----hhhHHHHHHH
Q 007077 334 LGALEQ--GKWIHGYINE--NR-ITV---DAVVATALIEMYAKCGLIEKALEIFYELRE----K-D----AASWTSIICG 396 (619)
Q Consensus 334 ~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~l~~~ 396 (619)
....+. -..+...+.. .| +-. ...+...|...|...|++.+|..++..+.. . + +..+..-+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 1112211110 11 111 123446788999999999999999998762 1 1 4466777888
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 397 LAMNGKINKALELFSQMIS----GGAKPDD--ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
|...+++..|..++.+... ....|+. ..+...+..+...+++.+|-..| ..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhcccc
Confidence 9999999999999998642 3222322 23444555566667776665543 335556666
Q ss_pred cCCHHHHHHHHh
Q 007077 471 AGLLDEAEELIR 482 (619)
Q Consensus 471 ~g~~~~A~~~~~ 482 (619)
.++.......+.
T Consensus 251 ~~d~~~~~~~L~ 262 (445)
T 4b4t_P 251 KSDEAKWKPVLS 262 (445)
T ss_dssp HSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 676655544443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.06 E-value=0.95 Score=36.89 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCccc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-------EHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEII 492 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 492 (619)
++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++..|...|++... -+..++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666677777776666655443334442 2445566666667777777766665320 011111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
. ...+. ....... -... +.+......++.+|.+.|++++|+.+++.++
T Consensus 102 ~--~~~~~----~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 V--RPSTG----NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred c--ccccc----ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 00000 0000000 0011 2233456779999999999999999988764
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.79 E-value=2.1 Score=31.32 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.-+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+- .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 445667777777778889999999999999999999999999999988753 3444567766643
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.35 E-value=4.8 Score=42.27 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=38.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|...|+++.|+.+-++.+.. .|+ ..+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45678888888887777653 344 7788888888888888888888887775
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.89 E-value=26 Score=35.92 Aligned_cols=389 Identities=9% Similarity=-0.058 Sum_probs=203.3
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCC
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKN 205 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 205 (619)
-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-..... .+..+..++..+...|.
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHCCC
Confidence 34556667778888888887776 3334444455667777889888888877777552222 33344455555544443
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC
Q 007077 206 LELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD 285 (619)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 285 (619)
+.. ...-.=++.....|+...|..+...+..........++..+.+- ..+....... .++
T Consensus 152 lt~----------------~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~ 211 (618)
T 1qsa_A 152 QDP----------------LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GAT 211 (618)
T ss_dssp SCH----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCC
T ss_pred CCH----------------HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCC
Confidence 322 11122235556677777777777766322211223333333222 2222232222 222
Q ss_pred hh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 007077 286 IV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL----VALLTGCAQLGALEQGKWIHGYINENRITVDAVV 358 (619)
Q Consensus 286 ~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (619)
.. .+..-+.-+.+ .+.+.|...|....+.. ..+.... ..+.......+...++...+....... .+...
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 287 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHH
Confidence 21 11112223333 47899999998886543 2233222 222333334452344445555444332 33333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 435 (619)
..-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+... . +|..++.+- +.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa~-~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAAQ-RI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHHH-HT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHHH-Hc
Confidence 4444555567799999999999998642 222333566778899999999999998742 2 344444221 22
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPK-LE-----HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
|.... . ......+. .. .-..-+..+...|....|...+.......++.. ...+.......|.+
T Consensus 361 g~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~---~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 361 GEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTE---QAQLARYAFNNQWW 429 (618)
T ss_dssp TCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHTTCH
T ss_pred CCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCh
Confidence 21000 0 00000110 00 111234557788999999888877654333222 44555556678888
Q ss_pred HHHHHHHHHHhccCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 510 DMGEKLAALLEKIES---KDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
+.++....+....+. .-|..|..++.-+.+.-.++.++-.---..+++..
T Consensus 430 ~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 430 DLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp HHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 888776655433221 11233555565566555555544332223344443
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.77 E-value=11 Score=38.77 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=28.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC
Q 007077 156 SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL 203 (619)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 203 (619)
..-.+|-.+.|.|.+++|.++.++... .+.--...|...+..++..
T Consensus 154 p~Wa~IyY~LR~G~~~~A~e~~~~~~~--~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIWALIFYLLRAGLIKEALQVLVENKA--NIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHHHHHHHHHTTTCHHHHHHHHHHTGG--GC-----CHHHHHHHC---
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh--hHhhhhHHHHHHHHHHHhC
Confidence 345678888999999999999987754 1222224666677777643
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.66 E-value=6.4 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007077 263 SGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL 324 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 324 (619)
..+...|++++|..+.+....||...|-++-. .+.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667888888888888888888888876644 57788888888887777666 4433333
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.21 E-value=13 Score=31.72 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHhcCCh
Q 007077 223 TPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~ 240 (619)
++.+....+.++.+.|..
T Consensus 94 ~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcH
Confidence 333334444444444443
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.19 E-value=6.9 Score=28.47 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 007077 263 SGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR 316 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 316 (619)
..+...|++++|..+.+....||...|-++-. .+.|..+++...+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 45667788888888888888888888876644 56777778877777776665
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.88 E-value=7.3 Score=28.51 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+.-+..+-++.+.. ..+.|++....+.+++|.+.+++..|..+++-+.........+|..++.
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 34456666666666 7788999999999999999999999999998888775555556665554
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.47 E-value=8.2 Score=43.38 Aligned_cols=96 Identities=6% Similarity=-0.059 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC----------------------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNE----------------------NNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..++.+|...|++++|.+.|++.... ........|..++..+.+.|.++.+.++.+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666654310 00111234677777888889999999888888
Q ss_pred hccCCCCcc-----hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 520 EKIESKDSS-----FHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 520 ~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
++..+.+.. .|..+.+.+...|++++|...+-.+++..
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 765543322 56778888888899999988887776543
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.60 E-value=20 Score=31.98 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHH
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE----HYGCLIDLLG 469 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~ 469 (619)
..+.+.|+.++|++....-++. .|. ...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHH
Confidence 3456788899999988888887 565 445566678888999999999888887753 56533 3333333211
Q ss_pred hcCCHHHHHHHHhh--CCC-CCCcccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 470 RAGLLDEAEELIRK--IPN-ENNEIIVPLYGALLSA--CRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 470 ~~g~~~~A~~~~~~--~~~-~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. .++|.- .+. -+.++. -...++.+ ....|+.++|..+-.++.+.-|..+.
T Consensus 80 ----~R--~~vfaG~~~P~~~g~~~~--w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ----AR--KDFAQGAATAKVLGENEE--LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HH--HHHTTSCCCEECCCSCHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HH--HHHHcCCCCCCCCCCCHH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11 123321 111 112222 13344444 34568999999988888887776655
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.46 E-value=5.6 Score=30.88 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.-+..+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34456666777777888999999999999999999999999999998875 34445567766643
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.24 E-value=22 Score=30.21 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=12.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 385 KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
++...-...+.++.+.+. .++...+.++.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444443 33444444443
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.09 E-value=36 Score=32.51 Aligned_cols=291 Identities=15% Similarity=0.107 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC--------CCchhHHHHHHHHHhcC-CHHHHHHHHccCCC---CChhhH-----
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPN--------KNVICWTSMVSGYVNCG-QLEKARDLFDRSPV---RDIVLW----- 289 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~----- 289 (619)
...|...|.+.|+.++..+++..... +.......+++.+.... ..+.-.++...... .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888877765 12223455555554432 22222222221110 011222
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHH
Q 007077 290 -TAMINGYVQFNRFDEAVALFREMQIIRLKPDK-----FILVALLTGCAQLGALEQGKWIHGYINEN--RITVDAVVATA 361 (619)
Q Consensus 290 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 361 (619)
.-++..|...|++.+|..++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 24667778888888888888777653212121 12334445556666666666666555332 12223322211
Q ss_pred H----HHHHH-hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 362 L----IEMYA-KCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 362 l----~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
+ ..++. ..+++..|...|-+.. .+|...|.+ .+. +...|..+ .+.....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL-~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLL-CKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHH-HHHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHH-HHHHcCC
Confidence 1 11223 4445555444443210 111111110 000 11123222 2222222
Q ss_pred cHHHHHHHHH-HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 437 LVDEGRRFFN-TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN--ENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 437 ~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..+-..++. .....+ ..|....+..++.+| ..+++.+..++++.... ..++.....+..+......
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~-------- 304 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE-------- 304 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------
Confidence 222222221 211222 345565566666655 45788777777776542 1222221223333322222
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
..+.++ ..|-.......++..+.- ..+++...+-+|...|.
T Consensus 305 ~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 122222 235455556677766543 67899999999987653
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.65 E-value=10 Score=32.07 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
.|+--...|..++..| ..++...+..+|..+. +++-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444555555443 2344667777777774 4556667777888888888888888888887776655433
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.54 E-value=23 Score=29.85 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCC
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNR 301 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 301 (619)
++..+....+..+.+.|..+....+.+.+.+++...-...+.++.+.+..+....+.+.+..++...-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444455555433333444444334443333334444444433333333333333343333333344444333
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.07 E-value=33 Score=38.53 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=112.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------------------
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-------------------- 385 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 385 (619)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|...|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566666666666544332 344555556677888999999999999886421
Q ss_pred ------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 386 ------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--I--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 386 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
-..-|.-++..+.+.+.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 0122566777888889999988888777654211121 1 4677788888899999998887666542 2
Q ss_pred CChhHHHHHHHHHHhcCCHH------------HHHHHHhhCC----CCCCcccHHHHHHHHHHHHHcCCHHHHHHH-HHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLD------------EAEELIRKIP----NENNEIIVPLYGALLSACRIYGNVDMGEKL-AAL 518 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~ 518 (619)
--......++..++..|..+ +..+++.... .....|+ .|..|-.-...+||+..|-.+ |+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~--Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPC--WYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH--HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCC--HHHHhHhhhhccCChHHHHHHHHHH
Confidence 22445666666666555443 3444442211 0112223 144444445667777665554 666
Q ss_pred Hhcc
Q 007077 519 LEKI 522 (619)
Q Consensus 519 ~~~~ 522 (619)
+.++
T Consensus 1047 ~~RL 1050 (1139)
T 4fhn_B 1047 LSRY 1050 (1139)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.63 E-value=12 Score=36.06 Aligned_cols=69 Identities=7% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE----VYQIQPKLEH 460 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 460 (619)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566667777777777777766551 23455777777777777777777777776543 3477777554
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.97 E-value=15 Score=28.63 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 170 FEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
.-+..+-++.+.. ..+.|++......+++|.+.+++..|..+++-+.....+...+|..+++
T Consensus 69 ~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3345556666666 7888999999999999999999999999999888876555666666554
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.93 E-value=44 Score=30.97 Aligned_cols=167 Identities=12% Similarity=0.065 Sum_probs=98.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELF----SQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
+.++..=|.+.+++++|++++.. -...+.+.|+...|.++- +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555567888888888887643 234455667765554443 555567778888777777776654
Q ss_pred cCcHH-HHHHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC
Q 007077 435 GGLVD-EGRRFFNTMT---EVYQ--IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN 508 (619)
Q Consensus 435 ~g~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (619)
...-+ .=..+.+.++ ..++ -.-|+.....+...|.+.|++.+|...|- . +..++...+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC
Confidence 43211 1111222221 1123 22346677788899999999999999883 2 233333446666655554443
Q ss_pred HHHHHHHHHHHhccCCCCcch-HHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 509 VDMGEKLAALLEKIESKDSSF-HTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
. ..... ....+--|...++...|..+++...+
T Consensus 183 ~---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 S---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp G---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 22222 23344457788999999988777654
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.98 E-value=32 Score=28.90 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhcCCh
Q 007077 226 MGNALLDMYCKCGCL 240 (619)
Q Consensus 226 ~~~~l~~~~~~~g~~ 240 (619)
+....+.++.+.|..
T Consensus 92 vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 92 VRQSAAVALGQIGDE 106 (201)
T ss_dssp HHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCcH
Confidence 333444444444443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.93 E-value=11 Score=36.78 Aligned_cols=94 Identities=14% Similarity=-0.036 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK------DAASWTSIICGLAMNGKINKALELFSQMIS---GGAKPDDITF--I 426 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~--~ 426 (619)
+...+...|.+.|++++|.+.|.++... -...+-..+..+...+++..+...+.+... .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556777777777777777777766532 234555666667777777777777766532 2222322211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
.-...+...+++..|...|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234556666666666665554
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.16 E-value=66 Score=30.71 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC----CC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHH---
Q 007077 361 ALIEMYAKCGLIEKALEIFYELRE----KD-----AASWTSIICGLAMNGKINKALELFSQMISG--GAKPDDITFI--- 426 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--- 426 (619)
.++..|...|++.+|.+++.++.+ .| ...+..-+..|...++..++...+...... .+.|++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999888877653 12 334555677888999999999998876532 2224433221
Q ss_pred -HHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHh-hC-CCCCCcccHHHHH
Q 007077 427 -GVLSACS-HGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIR-KI-PNENNEIIVPLYG 497 (619)
Q Consensus 427 -~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~~~~~~~~ 497 (619)
.-...+. ..+++..|...|-+..+.+.-..+ ...|..+..... ++..+-..++. +. ..- ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHHH
Confidence 1122345 789999998888777654432221 123433333332 33222222221 10 101 234444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++.+ ...+++.+...+++.....-..|+.
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~ 290 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKKELAEDVI 290 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTTTTTTSHH
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHHHhcChH
Confidence 55555 4677888888877766544444554
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.02 E-value=23 Score=31.68 Aligned_cols=236 Identities=11% Similarity=0.018 Sum_probs=114.1
Q ss_pred CCCChhHHHHhhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLL---AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKGE 108 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~ 108 (619)
+.|+++....+++.-..++.. .-.+.+...++.|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 86 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK--- 86 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH---
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH---
Confidence 678888877777755433222 1123444555666653 4444555565554321 112333344455544
Q ss_pred HHHHHHHHhCCCCChhh--HHHHHHHhHhcCChhHHHHHHccCCCCCee-------------cHHHHHHHHHcCCChhHH
Q 007077 109 KVHGYVVKTGLEFDTYV--CNSIMDMYGVLGKICNVKKLFDEMPDKDVV-------------SWNVSISGHVKCMRFEDA 173 (619)
Q Consensus 109 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A 173 (619)
+.+.+.+.|..++... ..+.+...+..|+.+-...+++.-..++.. .. +.+...+..|+.+-+
T Consensus 87 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 87 -LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKGHVEVL 164 (285)
T ss_dssp -HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHHHHTCHHHH
T ss_pred -HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHHHcCCHHHH
Confidence 4444555665544321 123344456677777777777665443221 12 233444556666555
Q ss_pred HHHHHHhHhcCCCCCC---hhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChh--HHHHHHHHHHhcCChhhHHHHh
Q 007077 174 VDVFRRMRQGCNLMPD---EGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPI--MGNALLDMYCKCGCLSEARELF 247 (619)
Q Consensus 174 ~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 247 (619)
..+++.. |..++ ....+.+..+ ...+.......+.+.+.+. ..++.. ...+.+...++.|..+-+..++
T Consensus 165 ~~Ll~~~----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 165 KILLDEM----GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHTS----CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhc----CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 5444431 33332 2222233333 3334433334455555544 222211 1123445556678888777777
Q ss_pred ccCC-C---CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 007077 248 DEMP-N---KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR 284 (619)
Q Consensus 248 ~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 284 (619)
+... . +|....+ -+...++.|..+-+.-+++....+
T Consensus 240 ~~~g~~~~~~~~~g~t-~l~~A~~~~~~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 240 EQEHIEINDTDSDGKT-ALLLAVELKLKKIAELLCKRGAST 279 (285)
T ss_dssp HSSSCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred hccCCCccccCCCCCc-HHHHHHHcCcHHHHHHHHHcCCCC
Confidence 6322 1 2222222 233445667777777777665544
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.40 E-value=6.2 Score=38.60 Aligned_cols=61 Identities=10% Similarity=-0.022 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+...+...+.+.|+++.|.+.+.++... ...+. ...+...+..+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666666666666666666666543 11222 4455556666666666666666665543
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.98 E-value=46 Score=29.61 Aligned_cols=111 Identities=7% Similarity=0.012 Sum_probs=54.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCcc---cHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChh--hHHHHHHH
Q 007077 58 LLIKAFAKKGSFRKSLLLFSKLRERGVSPDNF---TYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTY--VCNSIMDM 132 (619)
Q Consensus 58 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 132 (619)
..+...++.|+.+.. +.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 445556677776544 3444455444432 1123444445556654 444555566554432 12234445
Q ss_pred hHhcCChhHHHHHHccCCCCCe---ecHHHHHHHHHcCCChhHHHHHH
Q 007077 133 YGVLGKICNVKKLFDEMPDKDV---VSWNVSISGHVKCMRFEDAVDVF 177 (619)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~ 177 (619)
.+..|+.+-+..+++.-..++. ..++. +...+..|+.+-...++
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLY 125 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHH
Confidence 5567777777777765443322 22333 33344556654443333
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.12 E-value=7.9 Score=34.45 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..+.+.|++++|++.+..-+ +..|.+...-..|+..++-.|++++|.+-++...+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 34567888888888776655 224445555677778888888888888888888888887544
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=70.46 E-value=59 Score=29.03 Aligned_cols=16 Identities=0% Similarity=-0.016 Sum_probs=6.8
Q ss_pred CChhHHHHHHHHHHhc
Q 007077 222 FTPIMGNALLDMYCKC 237 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~ 237 (619)
++..+....+.++.+.
T Consensus 103 ~~~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 103 KSACVRATAIESTAQR 118 (280)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444444444444443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.26 E-value=26 Score=31.70 Aligned_cols=202 Identities=10% Similarity=0.017 Sum_probs=97.2
Q ss_pred CCChhHHHHhhccC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHH
Q 007077 35 HGNLLYAEKIFGSI--QSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHG 112 (619)
Q Consensus 35 ~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 112 (619)
..+..+..+++.+- ..+|..-++. +...++.|+.+-+.. +.+.|..++...-.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~---- 79 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVK---- 79 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----
Confidence 34555555555432 2233333333 334455666544433 334454444332234455555666665443
Q ss_pred HHHHhCCCCChh--hHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 113 YVVKTGLEFDTY--VCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 113 ~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
.+.+.|..++.. ...+.+...+..|+.+-+..+++.-.. ++..-|.+.+...+..|+.+-+.-+++ .|..
T Consensus 80 ~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~-----~g~~ 154 (285)
T 3kea_A 80 ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-----EIPS 154 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT-----TSCT
T ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCc
Confidence 344456544432 112334445567777777777665433 233333445555556666554433333 2322
Q ss_pred C-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccC
Q 007077 188 P-DEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEM 250 (619)
Q Consensus 188 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (619)
+ +...-.+.+...+..|..+.+..+++.-......+..-.+..+...++.|+.+-+.-+++.-
T Consensus 155 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp TCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred cccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 2 22133344555566777777777766544332222222222334455677777666666553
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.12 E-value=14 Score=30.16 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
+|+--..+|..++..| ++ +..+|..+. +++-..+..|...+..+...|++.+|.++++.-.+.+-.|
T Consensus 61 nD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444544555555443 33 556677664 5566677778888888999999999999998887766544
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.23 E-value=78 Score=30.55 Aligned_cols=107 Identities=10% Similarity=0.117 Sum_probs=44.8
Q ss_pred CCCChhHHHHhhccCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLL--AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKGEK 109 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~ 109 (619)
..|+++-+..+++.-..++.. ...+.+...++.|+.+-+.-+ .+.|..++... -.+.+...+..|+.+
T Consensus 23 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~---- 94 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHTN---- 94 (437)
T ss_dssp HHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCHH----
T ss_pred HCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHH----
Confidence 466777666666654333221 112333444455554433333 33343333221 112333334445543
Q ss_pred HHHHHHHhCCCCChhh--HHHHHHHhHhcCChhHHHHHHcc
Q 007077 110 VHGYVVKTGLEFDTYV--CNSIMDMYGVLGKICNVKKLFDE 148 (619)
Q Consensus 110 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 148 (619)
+.+.+.+.|..++... ..+.+...++.|+.+.+..+++.
T Consensus 95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 3333344454433211 11223334455555555555544
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.77 E-value=13 Score=29.77 Aligned_cols=80 Identities=9% Similarity=-0.008 Sum_probs=50.4
Q ss_pred HHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 475 DEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 475 ~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
+.+...|.... -.+|+--...|..++..| +.+..+|..+. +++-..+..|...+..+...|++.+|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444554333 123444444454444332 33677777775 4556677778888888999999999999988
Q ss_pred HHHhCCCcc
Q 007077 552 KMKEMGVRK 560 (619)
Q Consensus 552 ~m~~~~~~~ 560 (619)
.-.+++-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 877765443
No 285
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.23 E-value=88 Score=28.69 Aligned_cols=168 Identities=12% Similarity=0.007 Sum_probs=99.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALEL----FSQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555668888888888887654 23445566776665554 4555567888888777777766644
Q ss_pred cCcHH-HHHHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc--
Q 007077 435 GGLVD-EGRRFFNTMT---EVYQ--IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY-- 506 (619)
Q Consensus 435 ~g~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 506 (619)
-..-+ .=.++.+.++ ...+ -.-++.....+...|.+.|++.+|...|-.- ...+...+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcC
Confidence 22111 1112222222 1112 1235677888889999999999999887522 211233466666555554
Q ss_pred -CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 507 -GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 507 -g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
|...++--++ ...+--|...|+...|..+++...+
T Consensus 181 ~~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 181 DIEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5444433221 2233346678999999999887653
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.28 E-value=94 Score=32.08 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=15.8
Q ss_pred HHHHHHhcCChhhHHHHhccCCC
Q 007077 230 LLDMYCKCGCLSEARELFDEMPN 252 (619)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~ 252 (619)
....+...|++++|..+|+...+
T Consensus 449 aA~~ae~~G~~~dAi~LY~La~~ 471 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLAEE 471 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhcC
Confidence 34456677888888887776544
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.87 E-value=94 Score=26.01 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHH-----HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGA-----LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
++.|+-+++.+..+-+.. ...... .+..|.+.|.+++|.+++++..+-.|.+...-..|..+-.+..-+
T Consensus 94 LESAl~v~~~I~~e~~~l-heei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKL-HEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHHHTTSCSCCCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 677888888888554422 222222 234688899999999999998777776666555555554444433
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.11 E-value=50 Score=29.77 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=8.5
Q ss_pred HHHhHhcCChhHHHHHHcc
Q 007077 130 MDMYGVLGKICNVKKLFDE 148 (619)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~ 148 (619)
+...+..|+.+-+..+++.
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3334444555444444443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.20 E-value=17 Score=31.24 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=32.4
Q ss_pred HHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 511 MGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 511 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
.+..+|..+. +++-..+..|...+..|...|++.+|.++++.-..++-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4556666664 45556666677777777778888888777777665443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.05 E-value=1.5e+02 Score=27.14 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChHH--HHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNGKINK--ALELFSQMISGGAKPDDI--TFIGVLSAC 432 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~--~~~~ll~~~ 432 (619)
...++.-|...|+.++|...++++..+ .......++..-...++.+. +-.++..+...-+.++.. .|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q ss_pred hcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC--HHHHHHHHh--------------hCCCCCCcc
Q 007077 433 SHG-----GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL--LDEAEELIR--------------KIPNENNEI 491 (619)
Q Consensus 433 ~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~--------------~~~~~~~~~ 491 (619)
... .-++..-.++.+++.. ++-|-..............|. ...|..++. .-...+...
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d-~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGD-GILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHT-TSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHh-CCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC--hHHHHHHHHHHHhCCC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR--WEDVTNVRQKMKEMGV 558 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~ 558 (619)
.......++.-|...|+.++|.+.++.+..-.-.....+..+..++-+.+. .+....++..+.+.|+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.30 E-value=86 Score=24.22 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGK--INKALELFSQMISGGAKPDD 422 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 422 (619)
...++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3457777888888888888888887552 2334444555555432 35677778888777655443
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.47 E-value=1.9e+02 Score=31.61 Aligned_cols=88 Identities=5% Similarity=-0.134 Sum_probs=51.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CC---------------
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE---NN--------------- 489 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------------- 489 (619)
++..|...|..+-+.++.. -++.+...-..++.+|...|++++|.+.|+++... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5566666777766655432 22333333345667788888888888888876521 10
Q ss_pred ----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 490 ----EIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 490 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
......|..++..+.+.+-++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 00112355556666666666666666666654
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.21 E-value=98 Score=25.57 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=73.4
Q ss_pred HHHHHhccCCCCChhHHHHhhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHH
Q 007077 25 KLMVFCTHPSHGNLLYAEKIFGSIQ----SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAV 98 (619)
Q Consensus 25 ~l~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~ 98 (619)
.|..+. ..|+.+....++..-. .+|..-++.| ...++.|+. ++++.+.+.|..++... -.+.+...
T Consensus 8 ~L~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 8 ALLEAA---NQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYA 79 (201)
T ss_dssp HHHHHH---HTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHH---HhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 344444 5788888888887554 2333334443 344555664 44555556666655432 12233334
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChh--hHHHHHHHhHhcCChhHHHHHHccC-CC---CCeecHHHHHHHHHcCCC-hh
Q 007077 99 GWLGEVKKGEKVHGYVVKTGLEFDTY--VCNSIMDMYGVLGKICNVKKLFDEM-PD---KDVVSWNVSISGHVKCMR-FE 171 (619)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~-~~ 171 (619)
+..|+.+-+..+++. .+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.+..+. ..++ ..
T Consensus 80 ~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~ 155 (201)
T 3hra_A 80 GAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQ 155 (201)
T ss_dssp HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSH
T ss_pred HHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-Hhccchh
Confidence 455666544444322 23222221 1122344455677777777777654 22 2333334444333 3333 22
Q ss_pred HHHHHHHHhHhcCCCCCC
Q 007077 172 DAVDVFRRMRQGCNLMPD 189 (619)
Q Consensus 172 ~A~~~~~~m~~~~~~~p~ 189 (619)
.-.++++.+.+ .|..|+
T Consensus 156 ~~~~~v~~Ll~-~ga~~~ 172 (201)
T 3hra_A 156 LYQDIVKLLME-NGADQS 172 (201)
T ss_dssp HHHHHHHHHHH-TTCCTT
T ss_pred hHHHHHHHHHH-CCCCCC
Confidence 23445555555 455554
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.25 E-value=78 Score=25.33 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGK--INKALELFSQMISGGAKPDD 422 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 422 (619)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3557777888888888888888887552 2334444555555322 34577777777777654443
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.43 E-value=71 Score=27.33 Aligned_cols=116 Identities=11% Similarity=0.011 Sum_probs=58.2
Q ss_pred HHHHHHHhccCCCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc---HHHHHH
Q 007077 23 LNKLMVFCTHPSHGNLLYAEKIFGSIQSP---CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT---YPFVFK 96 (619)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~ 96 (619)
.+.|..+. +.|+++....+++.-..+ +..-+ +.+...++.|+.+ +++.+.+.|..++... -.+.+.
T Consensus 10 ~~~l~~A~---~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 10 TWDIVKAT---QYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp GCCHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred chHHHHHH---HcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhH
Confidence 33444444 578888888777754322 22222 3445556666654 3444445554443221 123334
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChh--hHHHHHHHhHhcCChhHHHHHHccCC
Q 007077 97 AVGWLGEVKKGEKVHGYVVKTGLEFDTY--VCNSIMDMYGVLGKICNVKKLFDEMP 150 (619)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (619)
..+..|+.+ +.+.+.+.|..++.. .....+...+..|+.+-+..+++.-.
T Consensus 82 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 82 WATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133 (240)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence 444455554 344455556554432 11233444556677776666666543
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.88 E-value=86 Score=26.90 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=40.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhh--HHHHHHHhHh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYV--CNSIMDMYGV 135 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 135 (619)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... ..+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4444566777666666666666655544332 112333334445543 3344445554443221 1122333344
Q ss_pred cCChhHHHHHHccC
Q 007077 136 LGKICNVKKLFDEM 149 (619)
Q Consensus 136 ~g~~~~A~~~~~~~ 149 (619)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 55555555555443
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.65 E-value=1.4e+02 Score=25.17 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=42.2
Q ss_pred hHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----HHHHHHHHHHHHHcCCC
Q 007077 288 LWTAMINGYV---QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA-----LEQGKWIHGYINENRIT 353 (619)
Q Consensus 288 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 353 (619)
.+.-+|+++. +-.+++.|+-++-+|.+.| .|....-..++.+....|. +..|...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444566654 4689999999999999999 7776666666666655443 23344445555555543
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.50 E-value=1.1e+02 Score=26.12 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=7.6
Q ss_pred HhHhcCChhHHHHHHcc
Q 007077 132 MYGVLGKICNVKKLFDE 148 (619)
Q Consensus 132 ~~~~~g~~~~A~~~~~~ 148 (619)
..+..|+.+-+..+++.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33444555444444443
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.00 E-value=96 Score=27.08 Aligned_cols=118 Identities=13% Similarity=-0.087 Sum_probs=61.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCccc-------HHHHHHHHh--ccCChhHHHHHHHHHHHhCC---------C-
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFT-------YPFVFKAVG--WLGEVKKGEKVHGYVVKTGL---------E- 120 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~- 120 (619)
+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445667777777777777776666555332 233333332 56777766666665433111 0
Q ss_pred CChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeec----------------HHHHHHHHHcCCChhHHHHHHH
Q 007077 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVS----------------WNVSISGHVKCMRFEDAVDVFR 178 (619)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 178 (619)
.|..- .+.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01112 233444556677777777776544433221 2233444456677655554444
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.43 E-value=78 Score=27.63 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=19.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHH
Q 007077 58 LLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 58 ~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346788889999999999887654
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.59 E-value=1.6e+02 Score=25.06 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=5.4
Q ss_pred HhcCChhhHHHHh
Q 007077 235 CKCGCLSEARELF 247 (619)
Q Consensus 235 ~~~g~~~~A~~~~ 247 (619)
...|+.+.+.++.
T Consensus 218 ~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 218 SLNSQVWSALQMS 230 (237)
T ss_dssp CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.85 E-value=2e+02 Score=25.42 Aligned_cols=21 Identities=5% Similarity=-0.195 Sum_probs=10.2
Q ss_pred ccCChhHHHHHHHHHHhcCCh
Q 007077 220 LEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~ 240 (619)
..+++.+....+.++.+.|+.
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC---
T ss_pred hCCCHHHHHHHHHHHHhcCCH
Confidence 345555555556666665553
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.82 E-value=1.7e+02 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 007077 302 FDEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINENR 351 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 351 (619)
..++.++|..|...|+--.. .-|......+...|++.+|.+++..-++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555555443221 223333333334444444444444444333
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.75 E-value=1.8e+02 Score=24.64 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----HHHHHHHHHHHHHcCC
Q 007077 286 IVLWTAMINGYV---QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA-----LEQGKWIHGYINENRI 352 (619)
Q Consensus 286 ~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 352 (619)
...+.-+|+++. +-.+++.|+-++-+|.+.|-.|....-..++.+....|. +..|...++.....|.
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334455666665 458999999999999999988877766666666654443 2334444444444453
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.80 E-value=1.7e+02 Score=25.46 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 292 MINGYVQFNRFDEAVALFREMQII--RLKP----DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
-++.+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456677778888888887765431 1221 0011111222222222222223333333 22 3344444555566
Q ss_pred HHhCCCHHHHHHHHHh
Q 007077 366 YAKCGLIEKALEIFYE 381 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~ 381 (619)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666543
No 306
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.50 E-value=1.6e+02 Score=24.64 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=33.1
Q ss_pred HHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007077 290 TAMINGYV---QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG 335 (619)
Q Consensus 290 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 335 (619)
.-+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34556654 46899999999999999998887666666665554443
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.45 E-value=1.6e+02 Score=23.45 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCChhhHHHHhccCC
Q 007077 228 NALLDMYCKCGCLSEARELFDEMP 251 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~ 251 (619)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555555555555555554
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.26 E-value=1.8e+02 Score=24.49 Aligned_cols=109 Identities=9% Similarity=-0.043 Sum_probs=54.2
Q ss_pred CCCChhHHHHhhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHH
Q 007077 34 SHGNLLYAEKIFGSIQ----SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKG 107 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 107 (619)
+.|+++....+++.-+ .++..-++.|. ..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 15 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-- 87 (231)
T 3aji_A 15 YSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE-- 87 (231)
T ss_dssp HHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH--
T ss_pred HhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH--
Confidence 5788888887776532 23333344333 345555543 4444455565554321 112233334445554
Q ss_pred HHHHHHHHHhCCCCChhh--HHHHHHHhHhcCChhHHHHHHccCCC
Q 007077 108 EKVHGYVVKTGLEFDTYV--CNSIMDMYGVLGKICNVKKLFDEMPD 151 (619)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~ 151 (619)
+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..
T Consensus 88 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 131 (231)
T 3aji_A 88 --IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131 (231)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4445555565443221 12334445566777766666665433
No 309
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.89 E-value=3.1e+02 Score=26.18 Aligned_cols=336 Identities=11% Similarity=0.093 Sum_probs=155.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChh--hHHHHHHHhHh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTY--VCNSIMDMYGV 135 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~ 135 (619)
+...+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+. .+.+.|..++.. ...+.+...++
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 4445566666543 44444565555432 233444555667765444 344456544322 12234455567
Q ss_pred cCChhHHHHHHccCCCCCee---cHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 007077 136 LGKICNVKKLFDEMPDKDVV---SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEI 212 (619)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 212 (619)
.|+.+-+.-+++.-..++.. .++ .+...++.|+.+-+..+++.-.. . ...+.... +.+...+..|+.+.+..+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~-~-~~~~~~g~-t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEAS-Q-ACMTKKGF-TPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCC-S-CCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCC-C-cCCCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 78887777777765443322 222 33444566776666555543211 0 01111111 233344556666655554
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchh--HHHHHHHHHhcCCHHHHHHHHccCCCC---Chh
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVIC--WTSMVSGYVNCGQLEKARDLFDRSPVR---DIV 287 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 287 (619)
++.-......+... .+.+...+..|+.+-..-+++.-..++... -.+.+...+..|+.+-+..+++..... +..
T Consensus 166 l~~g~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 244 (437)
T 1n11_A 166 LERDAHPNAAGKNG-LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244 (437)
T ss_dssp HHTTCCTTCCCSSC-CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 43211111111111 123344556777776666666544322211 112344455677887777777654322 222
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh--HHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF--ILVALLTGCAQLGALEQGKWIHGYINENRITVDAV--VATALI 363 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 363 (619)
-.+.+ ...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+.+-+..+ .+.|..++.. .-.+.+
T Consensus 245 g~t~L-~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L 315 (437)
T 1n11_A 245 GVTPL-HLAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL----IKHGVMVDATTRMGYTPL 315 (437)
T ss_dssp CCCHH-HHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH----HHHTCCTTCCCSSCCCHH
T ss_pred CCCHH-HHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCccCCCCCCCCCCHH
Confidence 22222 233455554433 3333444433211 011223334456666544433 3444433221 111234
Q ss_pred HHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007077 364 EMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 422 (619)
...+..|+.+-+.-+++.-... |..-++.|..+ ++.|+.+ +.+.+++.|..|+.
T Consensus 316 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 4456678877777676653332 22233333333 4556654 44555667777754
No 310
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.49 E-value=2e+02 Score=24.86 Aligned_cols=90 Identities=14% Similarity=-0.050 Sum_probs=44.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCc-------ccHHHHHHHHhcc---CChhHHHHHHHHHHHhCCCC--------
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDN-------FTYPFVFKAVGWL---GEVKKGEKVHGYVVKTGLEF-------- 121 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~-------- 121 (619)
+...++.|+.+....+++.+...|..++. .-.+.+..+ +.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44445666776666666666666655443 122233332 233 66665555555443322110
Q ss_pred --ChhhHHHHHHHhHhcCChhHHHHHHccCCC
Q 007077 122 --DTYVCNSIMDMYGVLGKICNVKKLFDEMPD 151 (619)
Q Consensus 122 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 151 (619)
|..- .+.+...+..|+.+-+..+++.-..
T Consensus 85 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 85 DEFYQG-HSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp STTTTT-CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccC-CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1112 2233444566777766666665443
No 311
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=34.28 E-value=1.1e+02 Score=30.35 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=37.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
|.+...-...++.|...|.++..+.|++...|+.|+-+....|+.-+|.-.+-+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3444444556677777777777777777777777777777777766666555443
No 312
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=34.04 E-value=68 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=24.4
Q ss_pred HHhhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 007077 42 EKIFGSIQ--SPCLLAYNLLIKAFAKKGSFRKSLLLFSKL 79 (619)
Q Consensus 42 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 79 (619)
..++.+++ +|++.||+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45677776 678888887776665555555555555543
No 313
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.39 E-value=1.8e+02 Score=22.94 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHhccCCCCChhHHHHhhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccH--H
Q 007077 19 NPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ----SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTY--P 92 (619)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~ 92 (619)
+..-.+.|..+. +.|+.+....+++.-. ..+..-++. +...+..|+. ++++.+.+.|..++.... .
T Consensus 5 ~~~~~~~l~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~ 76 (165)
T 3twr_A 5 NSEADRQLLEAA---KAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRV----SVVEYLLQHGADVHAKDKGGL 76 (165)
T ss_dssp -CHHHHHHHHHH---HHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSC
T ss_pred cchhhHHHHHHH---HhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChH----HHHHHHHhcCCCCCccCCCCC
Confidence 344445555555 5788888888887433 122222333 3444556664 444555556665554322 1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhh--HHHHHHHhHhcCChhHHHHHHcc
Q 007077 93 FVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYV--CNSIMDMYGVLGKICNVKKLFDE 148 (619)
Q Consensus 93 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 148 (619)
+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 77 t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 77 VPLHNACSYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 2333334445544 3344445555443221 11223333444555544444443
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.37 E-value=1.4e+02 Score=27.83 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=52.7
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHH
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSP---CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFV 94 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 94 (619)
.|..-.+.|..+. ..|+.+-+..+++.-..+ |..-++. +...+..|+.+- .+.+.+.|..++...-.+.
T Consensus 16 ~d~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 16 SDDENMEKIHVAA---RKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDT----AKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CCHHHHHHHHHHH---HHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCH
T ss_pred cCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHH----HHHHHHCCCCccccCCCCH
Confidence 3444455555554 578888888888754332 3333333 344455666543 3444444544444333334
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCC
Q 007077 95 FKAVGWLGEVKKGEKVHGYVVKTGLEFD 122 (619)
Q Consensus 95 l~~~~~~~~~~~a~~~~~~~~~~g~~~~ 122 (619)
+...+..|+.+-+..+++.....|..++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 4445566777777777766555565443
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.09 E-value=3.1e+02 Score=25.67 Aligned_cols=228 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChh
Q 007077 92 PFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFE 171 (619)
Q Consensus 92 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (619)
..++.-|...++..++...++.+......+.......-..+=.+...-+.+..++..+. .+..+-..+..++ .
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf------~ 130 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSF------D 130 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHH------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHH------H
Q ss_pred HHHHHHHHhHhcCCCCCChhhHHHHHHH---------------hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 007077 172 DAVDVFRRMRQGCNLMPDEGTVVSTLSA---------------CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCK 236 (619)
Q Consensus 172 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (619)
..++.+.++.- -.|+...+...+-+ ....-.-..+.++++.....+.. ......+-+.+.-
T Consensus 131 ~lle~ldDl~l---DiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~-~~~~~~~~~~WG~ 206 (358)
T 3eiq_C 131 KLLKDLPELAL---DTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSM-SKGGKRKDSVWGS 206 (358)
T ss_dssp HHHHTHHHHHH---HCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC----------CCCC
T ss_pred HHHHhhhhhcc---ccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhc-cchHHHHHHhcCC
Q ss_pred cCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHHcC--ChhHHHHHHHH
Q 007077 237 CGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVR---DIVLWTAMINGYVQFN--RFDEAVALFRE 311 (619)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~A~~~~~~ 311 (619)
.|......++-+++ +.++.-|...|+.++|...++.+..| .......+..++-+.+ ..+....++..
T Consensus 207 g~~~~~veelkkki--------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~ 278 (358)
T 3eiq_C 207 GGGQQPVNHLVKEI--------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKS 278 (358)
T ss_dssp CCSSSCHHHHHHHH--------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHH--------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHH
Q 007077 312 MQIIRLKPDKFILVALLTGCAQLGALE 338 (619)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~~~~~~~ 338 (619)
+...|+-+.......+...+....++.
T Consensus 279 L~~~glls~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 279 LWKSSTITIDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHhccHhh
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.85 E-value=1.2e+02 Score=20.81 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=40.4
Q ss_pred HHhHHCCCCCCcccHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 77 SKLRERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777765543 45666666554 5667888888888776656666666666777666643
No 317
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.65 E-value=1.7e+02 Score=22.51 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChhhHHHHhccCC
Q 007077 228 NALLDMYCKCGCLSEARELFDEMP 251 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~ 251 (619)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 444555555555555555555543
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.59 E-value=1.6e+02 Score=25.13 Aligned_cols=138 Identities=12% Similarity=-0.029 Sum_probs=67.1
Q ss_pred CCCChhHHHHhhcc-------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCCh
Q 007077 34 SHGNLLYAEKIFGS-------IQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEV 104 (619)
Q Consensus 34 ~~g~~~~a~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~ 104 (619)
+.|+.+.+..+++. +..+|..-++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 57888888777762 1223333333 344455666654 4555556776665432 12334444556666
Q ss_pred hHHHHHHHHHHHhCCCCChh--hHHHHHHHhHhcCChhHHHHHHccCCCCCee---cHHHHHHHHHcCCChhHHHHH
Q 007077 105 KKGEKVHGYVVKTGLEFDTY--VCNSIMDMYGVLGKICNVKKLFDEMPDKDVV---SWNVSISGHVKCMRFEDAVDV 176 (619)
Q Consensus 105 ~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 176 (619)
+....+++.....+..++.. .....+...++.|+.+-...+++.-..++.. ...+.+...++.|+.+-+.-+
T Consensus 93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 169 (241)
T 1k1a_A 93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169 (241)
T ss_dssp HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence 55444443322111122211 1223344455667777777777665443321 122334444556665443333
No 319
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.46 E-value=3e+02 Score=25.26 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=43.9
Q ss_pred CHHHHHHHHhhCCCCCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 473 LLDEAEELIRKIPNENNEII--VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
+.....++-.-+...+..|. .-++..-+..+.+.+|+..|-.+.++++++.|... ..++|.+++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 33444444443332223332 22355667778999999999999999999998633 344566666
Q ss_pred HHHHhC
Q 007077 551 QKMKEM 556 (619)
Q Consensus 551 ~~m~~~ 556 (619)
..-...
T Consensus 251 ~~ce~~ 256 (325)
T 3mv2_A 251 NKADSM 256 (325)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 665543
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.80 E-value=1.1e+02 Score=30.36 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-cccH--HHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENN-EIIV--PLYG-ALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
...++.++..|...+.++.|..++.+...... ..+. ..|. .+...+...+++.+|.+.+..+....|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45788888999999999999999998874322 2221 1222 2344567788999999999999888887654
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.80 E-value=2.8e+02 Score=25.61 Aligned_cols=87 Identities=21% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHhcCChhhHHHHhccCCCC---CchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 007077 232 DMYCKCGCLSEARELFDEMPNK---NVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (619)
...+..|+.+....+++.-..+ |..-++ .+...+..|+.+-+.-+++.....+...-.+.+...+..|+.+-+..+
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 103 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103 (364)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHH
Confidence 3334455555555555442221 111111 223334455665555555554433221111122333455665555555
Q ss_pred HHHHHHcCCCC
Q 007077 309 FREMQIIRLKP 319 (619)
Q Consensus 309 ~~~m~~~g~~p 319 (619)
++.....|..|
T Consensus 104 l~~~~~~~~~~ 114 (364)
T 3ljn_A 104 VEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHTCCH
T ss_pred HHhccccCCCH
Confidence 55443334333
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.71 E-value=1.9e+02 Score=24.64 Aligned_cols=50 Identities=6% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-hH-----HHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007077 438 VDEGRRFFNTMTEVYQIQPKL-EH-----YGCLIDLLGRAGLLDEAEELIRKIPNE 487 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 487 (619)
.+.|..+|+.+.+...+..+. .. --..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776653222221 11 113445678889999999999888754
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.69 E-value=82 Score=22.82 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 007077 370 GLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
...+.|.++++.+..+.+.+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467888888888888888888888888877676665543
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.63 E-value=43 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=23.5
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHH
Q 007077 36 GNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKS 72 (619)
Q Consensus 36 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 72 (619)
.+.+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566677777777666666677777776655554444
No 325
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.38 E-value=1e+02 Score=30.53 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-------LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
..++.+++.|...+.++.|..+..+.. ++.. ..-+..++..+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 467888899999999999999988763 2222 11223456777889999999999988663
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.92 E-value=1.5e+02 Score=23.32 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
..-.|.++++.+.+.+...+..+....++.+...|-
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 334445555555444433344433334444444443
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.83 E-value=3.1e+02 Score=29.92 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=37.9
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhH
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMR 181 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 181 (619)
++..+...|..+-|.++..-.+. ++..--.+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56667778888888776665554 44333356678889999999999998764
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.56 E-value=2.7e+02 Score=23.53 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCccc--HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChh--hHHHHHHHhHh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFT--YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTY--VCNSIMDMYGV 135 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~ 135 (619)
+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+. .+.+.+.|..++.. ...+.+...+.
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA----VKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 33445556543 4444455555544322 1122333334455443 33334445433321 11223333445
Q ss_pred cCChhHHHHHHcc
Q 007077 136 LGKICNVKKLFDE 148 (619)
Q Consensus 136 ~g~~~~A~~~~~~ 148 (619)
.|+.+-+..+++.
T Consensus 87 ~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 87 KGHYEVVQYLLSN 99 (237)
T ss_dssp TTCHHHHHHHHTT
T ss_pred cCCHHHHHHHHhC
Confidence 5555555555544
No 329
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.81 E-value=71 Score=22.80 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.2
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+.+...++.+.+.|+|++|++..++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345667777888888888877666554
No 330
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=27.43 E-value=1.1e+02 Score=23.29 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 86 PDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 86 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
++...-...+.++.+.++.+....+.. +.+ .++..+-...+.++.+.|+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~-~L~---d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIK-LLE---DDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHH-HHH---HCCTHHHHHHHHHHHHHCSH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCcH
Confidence 455555555666666665433333333 332 24555555555566665543
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.09 E-value=68 Score=27.25 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+..|.+.|.+++|.+++++..+-.|.+...-..|..+-.+..-
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 4568999999999999999977655554444455555444443
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.55 E-value=1.5e+02 Score=23.36 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 007077 413 MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 455666655432 22333333344455566666666554 3334455555566666666654
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.54 E-value=2.1e+02 Score=26.52 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCC
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKN 254 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (619)
..++.-|...|+.++|.+.++++..|.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 667777888888888888888877653
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.80 E-value=2.2e+02 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=16.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
+..-.|.++++.+.+.+...+..+....++.+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344445555555444433344333334444444443
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.71 E-value=3.1e+02 Score=22.98 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCChh--------hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 372 IEKALEIFYELREKDAA--------SWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
++.|+.+|+.+.+.-.. .--..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 56777777777643111 1122345677888888888888885443
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.13 E-value=2e+02 Score=22.76 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 007077 413 MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|....++.+...|-.
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 445565554332 22333343444455666666666554 3344555555566666666654
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.84 E-value=3.2e+02 Score=22.89 Aligned_cols=145 Identities=8% Similarity=-0.012 Sum_probs=72.9
Q ss_pred CCCChhHHHHhhcc-CC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCC----CCCcccHHHHHHHHhccCChh
Q 007077 34 SHGNLLYAEKIFGS-IQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGV----SPDNFTYPFVFKAVGWLGEVK 105 (619)
Q Consensus 34 ~~g~~~~a~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~ 105 (619)
+.|+.+.+..+++. -. .+|..-++. +...+..|+.+-+..+++.-..... ..|..-.+ .+...+..|+.+
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~ 89 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVINQNVN 89 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHHcCCHH
Confidence 67888888888875 22 233333443 4445566776655555554222100 01112222 333334456654
Q ss_pred HHHHHHHHHHHhCCCCChhh---------------HHHHHHHhHhcCChhHHHHHHccCCCCCe---ecHHHHHHHHHcC
Q 007077 106 KGEKVHGYVVKTGLEFDTYV---------------CNSIMDMYGVLGKICNVKKLFDEMPDKDV---VSWNVSISGHVKC 167 (619)
Q Consensus 106 ~a~~~~~~~~~~g~~~~~~~---------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~ 167 (619)
+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..++. .-+ +-+...+..
T Consensus 90 ----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~ 164 (232)
T 2rfa_A 90 ----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQ 164 (232)
T ss_dssp ----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTC
T ss_pred ----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHc
Confidence 4445556666554421 23344455566777777666665443322 222 234444566
Q ss_pred CChhHHHHHHHHhHhcCCC
Q 007077 168 MRFEDAVDVFRRMRQGCNL 186 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~ 186 (619)
|+.+-+..+++.+.+ .|.
T Consensus 165 ~~~~~~~~i~~~Ll~-~g~ 182 (232)
T 2rfa_A 165 PNKTFACQMYNLLLS-YDG 182 (232)
T ss_dssp SCHHHHHHHHHHHHH-TTC
T ss_pred CChHHHHHHHHHHHh-cCC
Confidence 777666666666555 443
No 338
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.53 E-value=4.3e+02 Score=23.88 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=29.8
Q ss_pred HHHHHHhccCCCCChhHHHHhhccCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 24 NKLMVFCTHPSHGNLLYAEKIFGSIQSPCLL----AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 24 ~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
+.|+.+. +.|+++-+..+++.-..+|.. -++. +...++.|+.+ +.+.+.+.|..|+.
T Consensus 27 t~L~~Av---~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~~~ 87 (337)
T 4g8k_A 27 HLLIKAV---QNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVL 87 (337)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred hHHHHHH---HcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCchhh
Confidence 3344444 678888888887754433322 1233 33445566543 34444556655543
No 339
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.20 E-value=3e+02 Score=21.92 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 007077 305 AVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITV 354 (619)
Q Consensus 305 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 354 (619)
+.++|..|...|+--. ..-|......+...|++.+|.+++..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555554322 2234444444445555555555555555444444
No 340
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.82 E-value=93 Score=24.34 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=11.1
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 007077 60 IKAFAKKGSFRKSLLLFSK 78 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~ 78 (619)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444566666666666555
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.63 E-value=1.7e+02 Score=23.63 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCChhHHHHHHHHHHhcCCH
Q 007077 404 NKALELFSQ-MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY-QIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 404 ~~A~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+.. +...+..|...-++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334444433 44566666543 2344555555566667777777776531 1234455655666677777754
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.19 E-value=1.4e+02 Score=26.00 Aligned_cols=55 Identities=4% Similarity=-0.179 Sum_probs=27.5
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCChh-------hHHHHHHHhh--cCCChHHHHHHHHHH
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG-------TVVSTLSACT--ALKNLELGKEIHRYI 216 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 216 (619)
+...++.|+.+....+++.+.. .+..++.. -.+.+..++. +.|+.+.+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344556777766666665544 34433322 2233333322 456666666666553
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.31 E-value=2.4e+02 Score=21.72 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHhHHCCCCCCcccHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcC
Q 007077 77 SKLRERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLG 137 (619)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 137 (619)
+.|.+.|.+ -...-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 7 ~~l~~~g~r-~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLK-VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCC-CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCC-CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 344
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.26 E-value=3.6e+02 Score=22.08 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHH
Q 007077 268 CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-----------------KFILVALLTG 330 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------------~~~~~~ll~~ 330 (619)
.|.+..++-++.....-...-|..+ +|-+..++..|+..++.+....+..| .+.++.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Q ss_pred HHccCcHHHHHHHHHH
Q 007077 331 CAQLGALEQGKWIHGY 346 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~ 346 (619)
|.+.|+.++|...+..
T Consensus 124 ltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 124 CTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhh
No 345
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.12 E-value=1.8e+02 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhCCC
Q 007077 312 MQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN--RITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 371 (619)
+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455555443 233444555555555666666666655 444444444445555665554
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.09 E-value=2.7e+02 Score=21.94 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHhHHCCCCCCcccHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 77 SKLRERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4466778776554 344556666665 6778999999998877666666655566777777654
Done!