BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007078
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
++A +LA + PIT RPK +P+++ P+I Y + +L G+ ++ V + +K+
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKE 59
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
++AI+LA T+ RP+T PK L+ + P+I Y + +L+ G+ ++ + + K+
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDI-IIIVGYLKEQ 84
Query: 89 IDYLE 93
DYL+
Sbjct: 85 FDYLK 89
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
++AI+LA T+ RP+T PK L+ + P+I Y + +L+ G+ ++ + + K+
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDI-IIIVGYLKEQ 84
Query: 89 IDYLE 93
DYL+
Sbjct: 85 FDYLK 89
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
L + S+W N K S + ++ +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQW--GLNLQYKVSPSPDGLAQA---FIIGEEFIGHDDCALVLGDNI 113
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
L + S+W N K S + ++ +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQW--GLNLQYKVDPSPDGLAQA---FIIGEEFIGHDDCALVLGDNI 113
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ + LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
L + S+W + V+ + D L +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ + LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
L + S+W + V+ + D L +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ + LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
L + S+W + V+ + D L +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
L + S+W + V+ + II GD L+ N+ +G
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
L + S+W + V+ + II GD L+ N+ +G
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
L + S+W + V+ + II GD L+ N+ +G
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ + LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
L + S+W + V+ A +I E+ + H D L+ GD +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPD----GTAQAF-IIGEEFIGHDDCALVLGDNI 113
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P+T+ K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90 DYL--ENSEW 97
L + S+W
Sbjct: 65 QQLLGDGSQW 74
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P TL K LLP+ + PMI Y L+ L AG+ E+ +
Sbjct: 13 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 90 DYL--ENSEW 97
L + S W
Sbjct: 73 QQLLGDGSNW 82
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P TL K LLP+ + PMI Y L+ L AG+ E+ +
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 90 DYL--ENSEW 97
L + S W
Sbjct: 64 QQLLGDGSNW 73
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P TL K LLP+ + PMI Y L+ L AG+ E+ +
Sbjct: 14 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 90 DYL--ENSEW 97
L + S W
Sbjct: 74 QQLLGDGSNW 83
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC 82
++ I+LA T+ PIT K LLP+ + PMI Y L+ L AG+ ++ +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIIST 57
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ PIT K LLP+ + P I Y L+ L AG+ E+ + K
Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 90 DYL 92
L
Sbjct: 65 QRL 67
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ + A + T+F PIT PK +LP+V+ P+I Y + AG + + + + +
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 90 DYLENS 95
DY + S
Sbjct: 64 DYFDTS 69
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+ I+LA T+ P TL K LLP+ + P I Y L+ L AG+ E+ +
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 90 DYL--ENSEW 97
L + S W
Sbjct: 64 QQLLGDGSNW 73
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 326 RGMYRALEIEQSRSAQVGSFTVI---------GYGTKIGSNSKISDSVIGEGCTIGSNVL 376
RG + I S Q GS I GY IG + I + GCTIG+ VL
Sbjct: 53 RGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVL 112
Query: 377 IE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVV 416
I S I D I+ED VIV G + G VL+ G V
Sbjct: 113 IGMKSMIMDGAIVED-----EVIVAAGATVSPGKVLESGFV 148
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
+A++ T+ P T PK +LPLV+ P+I Y + AAG+ E+ + + +
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 90 DYLENS 95
++ + S
Sbjct: 70 NHFDTS 75
>pdb|3JUI|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Translation Initiation Factor Eif2b Epsilon Subunit
Length = 182
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 564 DDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLR 598
DD F+ EV T R EEN+ D+++LE+NSL+
Sbjct: 9 DDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLK 43
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate
Length = 297
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 27 QPL-QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS 85
+PL +A+ T+F P T PK +LP+V+ P+I Y + AG+ E +F
Sbjct: 12 KPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGI-EQMIFVTGRG 70
Query: 86 KQVID 90
K ++
Sbjct: 71 KSALE 75
>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
(Alcc) From Bordetella Bronchiseptica
pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
(Alcc) With Adenosine From Bordetella Bronchiseptica
pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin Biosynthesis Protein C
(Alcc) With Atp From Bordetella Bronchiseptica
Length = 618
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 223 NPSISLHNDKQDCYIDICSPE---VLSLFTDNFD--YQHLRRHFVKGLLLDDIMGYKIFT 277
NP + L Q D+ PE +L++F D F+ ++HL + V+ L+ + +++
Sbjct: 478 NPQVRLPQAAQRLAADV--PEAYKLLTIFVDVFEGYFRHLTQILVETELMPEHDFWRLVA 535
Query: 278 HEI---HSSYAARIDNYRSYDIVSKDIIQ 303
I ++ R+D YR YD+ + D+I
Sbjct: 536 GRIAAYQQAHPQRLDKYRRYDLFAPDMIH 564
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 32 ILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDY 91
++ A T+F P T PK LLP+V+ P I A G + + + V+ +
Sbjct: 16 VVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAH 75
Query: 92 LENSEWFSQ 100
E S +
Sbjct: 76 FERSSELEE 84
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQ 87
++ I+LA ++ PIT K LLP+ PMI + + L+ + ++ + H
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 88 VIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
V+ +L + + F +FT + + I+ AL L E V + V+I GD +
Sbjct: 85 VVSFLGSGQEFG-VSFTYRVQDKAGGIA--QALGLC-EDFVGNDRMVVILGDNI 134
>pdb|3MQG|A Chain A, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQG|B Chain B, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQG|C Chain C, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQG|D Chain D, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQG|E Chain E, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQG|F Chain F, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Acetyl-Coa
pdb|3MQH|A Chain A, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
pdb|3MQH|B Chain B, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
pdb|3MQH|C Chain C, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
pdb|3MQH|D Chain D, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
pdb|3MQH|E Chain E, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
pdb|3MQH|F Chain F, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From
Bo Petrii In Complex With Coa And
Udp-3-Amino-2-Acetamido-2,3- Glucuronic Acid
Length = 192
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 20/71 (28%)
Query: 340 AQVGSFTVIGYGTKIGSNSKISDSV-------IGEGCTIGSNVLI-------------EG 379
A + ++ G +IG++S+I V IGEGC++G NV +
Sbjct: 4 ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNN 63
Query: 380 SYIWDNVIIED 390
++DNV +ED
Sbjct: 64 VSVYDNVFLED 74
>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|1V67|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|2FKO|A Chain A, Structure Of Ph1591 From Pyrococcus Horikoshii Ot3
Length = 173
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 354 IGSNSKISDSV-----------IGEGCTIGSNVLIEGSYIWDNVIIE-DGCELRHVIVCD 401
+G S + D+V IGE TIG N ++ G+ + + VII L + D
Sbjct: 52 VGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGD 111
Query: 402 GVIMKAGAVLKP 413
VI+ AGAV+ P
Sbjct: 112 HVIIGAGAVVPP 123
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIG-SNVLIEGSYIWDN 385
G Y ++ S G T IG IG N+ + + +G IG S+V+++G+ I D+
Sbjct: 53 GKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDH 112
Query: 386 VIIEDG 391
VII G
Sbjct: 113 VIIGAG 118
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 344 SFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIED 390
S+ G IG + + V+ GCTIG+ VL+ GS + D I+ED
Sbjct: 72 SYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVED 119
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN 385
RG + I + Q GS V+ K SN + +IGE T+G V++ G I +
Sbjct: 49 RGDVNYVAIGARTNIQDGS--VLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR 106
Query: 386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
V++ G IV DG I++ V+IG +VP H ++
Sbjct: 107 VLVGMGS-----IVLDGAIIED------------DVMIGAGSLVPQHKRL 139
>pdb|3UCP|A Chain A, Outer Membrane Endecaheme Cytochrome Unda From Shewanella
Sp. Hrcr-6
pdb|3UFH|A Chain A, Crystal Structure Of Unda With Iron Citrate Bound
pdb|3UFK|A Chain A, Crystal Structure Of Unda Complexed With Iron
Nitrilotriacetate
Length = 874
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 547 LISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVN 595
+D S+G D ED K V + +AT L+A E+VK+D+ + V+
Sbjct: 24 FAADQGGSDGKDGEDGKPGPVGLDIS-QATTLKATLEDVKIDNGTVSVD 71
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 347 VIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDG 402
VIG T I N+ I + +VIG I N ++ S + +IIEDG + H ++
Sbjct: 30 VIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSP-NNPLIIEDGVTVGHQVILHS 88
Query: 403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
I++ A++ G ++ + IGE + A S V
Sbjct: 89 AIVRKNALIGMGSIILDRAEIGEGAFIGAGSLV 121
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC 400
+VG T I T + ++S D+VIG+ TIG + ++ + +N + G IV
Sbjct: 74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGS-----IVM 128
Query: 401 DGVIMKAGAVLKPGVVLS 418
D +M+ G++L G +L+
Sbjct: 129 DRAVMEEGSMLAAGSLLT 146
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 335 EQSRSAQVGSFTVI-----GYGTKIGSNSKISDSVIGEGCTIGSNVLI---EG-----SY 381
E + A VG+F I G G+K G S + D+ IG G IG+ + +G +
Sbjct: 337 ELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTI 396
Query: 382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVL 411
I D+V + +L V V +G + AG +
Sbjct: 397 IGDDVFVGSDTQLVAPVTVANGATIGAGTTV 427
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 GEGCTIGSNVLIEGSYIW-DNVIIEDGCELRHVIVCD 401
G TI +NV+IEG I D V I GC L++ ++ D
Sbjct: 269 GRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGD 305
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 335 EQSRSAQVGSFTVI-----GYGTKIGSNSKISDSVIGEGCTIGSNVLI---EG-----SY 381
E + A VG+F I G G+K G S + D+ IG G IG+ + +G +
Sbjct: 340 ELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTI 399
Query: 382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVL 411
I D+V + +L V V +G + AG +
Sbjct: 400 IGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 GEGCTIGSNVLIEGSYIW-DNVIIEDGCELRHVIVCD 401
G TI +NV+IEG I D V I GC L++ ++ D
Sbjct: 272 GRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGD 308
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 335 EQSRSAQVGSF-----TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI---EG-----SY 381
E + VG+F + +G G+K+ + + DS IG C IG+ V+ +G +
Sbjct: 337 ELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTI 396
Query: 382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVL 411
I D+V + +L V V +G + AG +
Sbjct: 397 IGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427
>pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
M.Tuberculosis
Length = 328
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 19 EDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVF 78
+DP AR+ L+ I FRP TL + + L +P+ +T + AGV E
Sbjct: 221 KDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERI 280
Query: 79 VFCCAHSKQV 88
+ H +V
Sbjct: 281 DYWGEHRHEV 290
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 341 QVGSFTVIGYGTKIGSNS--------------KISDSVIGEGCTIGSNVLIE-----GSY 381
Q+G +I GT +G++ +I +IG+ IG+ I+ +
Sbjct: 165 QIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTI 224
Query: 382 IWDNVIIEDGCELRH-VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
I + VII++ C++ H V++ D + G ++ + + +IG V+ H ++
Sbjct: 225 IGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEI 279
>pdb|3SGI|A Chain A, Crystal Structure Of Dna Ligase A Brct Domain Deleted
Mutant Of Mycobacterium Tuberculosis
Length = 615
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 19 EDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVF 78
+DP AR+ L+ I FRP TL + + L +P+ +T + AGV E
Sbjct: 221 KDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERI 280
Query: 79 VFCCAHSKQV 88
+ H +V
Sbjct: 281 DYWGEHRHEV 290
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGS-NVLIEGSYIWDNVII 388
A + E SA VG++ VI G +IG+ IG C IG+ +V+ EG ++ V +
Sbjct: 129 AADAEVDPSASVGAYAVIESGARIGAGVS-----IGAHCVIGARSVIGEGGWLAPRVTL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,190,042
Number of Sequences: 62578
Number of extensions: 765580
Number of successful extensions: 2160
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 120
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)