Query 007078
Match_columns 619
No_of_seqs 372 out of 2836
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1461 Translation initiation 100.0 3E-115 6E-120 927.4 40.9 551 1-614 1-553 (673)
2 PLN02241 glucose-1-phosphate a 100.0 2.1E-48 4.6E-53 426.1 32.7 360 27-413 2-401 (436)
3 COG1208 GCD1 Nucleoside-diphos 100.0 1E-46 2.2E-51 401.0 36.8 319 28-407 1-324 (358)
4 PRK02862 glgC glucose-1-phosph 100.0 2.3E-46 4.9E-51 409.1 34.2 379 28-435 3-429 (429)
5 KOG1462 Translation initiation 100.0 1.4E-46 2.9E-51 381.7 22.3 373 26-426 7-414 (433)
6 PRK05293 glgC glucose-1-phosph 100.0 2.1E-44 4.5E-49 388.6 32.8 358 27-429 2-379 (380)
7 KOG1322 GDP-mannose pyrophosph 100.0 1.2E-44 2.6E-49 361.2 26.7 347 27-437 8-357 (371)
8 KOG1460 GDP-mannose pyrophosph 100.0 2.6E-44 5.5E-49 352.7 21.4 333 27-397 1-358 (407)
9 PRK00844 glgC glucose-1-phosph 100.0 5.7E-43 1.2E-47 380.3 32.1 346 26-413 3-382 (407)
10 TIGR02092 glgD glucose-1-phosp 100.0 6E-43 1.3E-47 375.8 27.3 337 28-411 2-353 (369)
11 PRK00725 glgC glucose-1-phosph 100.0 2.4E-42 5.1E-47 377.0 32.3 350 27-416 14-397 (425)
12 COG0448 GlgC ADP-glucose pyrop 100.0 2.2E-41 4.8E-46 350.2 27.4 345 27-414 4-363 (393)
13 TIGR02091 glgC glucose-1-phosp 100.0 9.5E-41 2.1E-45 357.7 29.0 344 31-412 1-360 (361)
14 TIGR01208 rmlA_long glucose-1- 100.0 7.7E-40 1.7E-44 349.6 35.6 344 30-424 1-352 (353)
15 PRK14355 glmU bifunctional N-a 100.0 3.9E-37 8.4E-42 339.9 36.6 324 28-395 3-336 (459)
16 PRK14358 glmU bifunctional N-a 100.0 1.9E-37 4.2E-42 343.4 33.8 339 25-411 4-355 (481)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 1.5E-35 3.2E-40 326.6 35.0 357 29-437 1-382 (451)
18 PRK14352 glmU bifunctional N-a 100.0 1.7E-35 3.7E-40 328.7 35.5 334 27-407 3-351 (482)
19 PRK09451 glmU bifunctional N-a 100.0 3.1E-35 6.6E-40 324.6 35.9 314 27-394 4-332 (456)
20 cd04197 eIF-2B_epsilon_N The N 100.0 2.6E-36 5.7E-41 300.7 23.5 214 29-245 1-217 (217)
21 PRK14356 glmU bifunctional N-a 100.0 1.3E-34 2.8E-39 319.7 33.0 340 28-411 5-354 (456)
22 PRK14353 glmU bifunctional N-a 100.0 4.3E-34 9.2E-39 314.7 36.0 365 26-441 3-407 (446)
23 PRK14359 glmU bifunctional N-a 100.0 7.1E-34 1.5E-38 311.5 35.7 365 27-441 1-394 (430)
24 COG1207 GlmU N-acetylglucosami 100.0 2E-33 4.4E-38 290.6 30.1 356 28-445 2-374 (460)
25 PRK14357 glmU bifunctional N-a 100.0 6.5E-33 1.4E-37 305.5 34.5 316 29-396 1-341 (448)
26 PRK14354 glmU bifunctional N-a 100.0 1.2E-32 2.5E-37 304.3 34.6 332 27-405 1-343 (458)
27 cd04198 eIF-2B_gamma_N The N-t 100.0 1.3E-33 2.7E-38 280.8 19.1 209 29-245 1-214 (214)
28 PRK14360 glmU bifunctional N-a 100.0 1.8E-31 4E-36 294.1 35.7 317 29-395 2-347 (450)
29 cd02507 eIF-2B_gamma_N_like Th 100.0 1.8E-32 3.8E-37 273.0 21.5 211 29-245 1-216 (216)
30 COG1209 RfbA dTDP-glucose pyro 100.0 6.1E-31 1.3E-35 259.1 18.1 232 29-303 1-237 (286)
31 TIGR01105 galF UTP-glucose-1-p 100.0 3.1E-30 6.6E-35 267.8 23.6 239 28-301 3-276 (297)
32 PF00483 NTP_transferase: Nucl 100.0 6.1E-30 1.3E-34 259.3 22.4 234 30-303 1-247 (248)
33 cd06425 M1P_guanylylT_B_like_N 100.0 9.8E-30 2.1E-34 256.0 22.4 229 29-301 1-232 (233)
34 cd06428 M1P_guanylylT_A_like_N 100.0 9.6E-30 2.1E-34 259.9 22.5 234 31-300 1-256 (257)
35 PRK10122 GalU regulator GalF; 100.0 1.8E-29 3.9E-34 262.6 23.5 239 28-301 3-276 (297)
36 PRK15480 glucose-1-phosphate t 100.0 4.6E-28 9.9E-33 251.0 23.0 230 28-302 3-241 (292)
37 cd02538 G1P_TT_short G1P_TT_sh 100.0 6.1E-28 1.3E-32 244.0 22.5 232 29-301 1-237 (240)
38 TIGR02623 G1P_cyt_trans glucos 100.0 8.9E-28 1.9E-32 245.0 22.6 227 30-303 1-246 (254)
39 TIGR01207 rmlA glucose-1-phosp 100.0 1.4E-27 3E-32 247.0 21.3 231 30-301 1-236 (286)
40 cd02541 UGPase_prokaryotic Pro 100.0 1.6E-27 3.5E-32 244.7 21.2 239 29-302 1-265 (267)
41 cd06422 NTP_transferase_like_1 100.0 2E-27 4.3E-32 237.2 21.1 219 30-297 1-221 (221)
42 PRK13389 UTP--glucose-1-phosph 100.0 2.9E-27 6.2E-32 246.5 22.9 240 26-301 6-279 (302)
43 TIGR01099 galU UTP-glucose-1-p 100.0 3.7E-27 8.1E-32 241.1 21.4 234 29-297 1-260 (260)
44 cd04189 G1P_TT_long G1P_TT_lon 99.9 1.5E-26 3.2E-31 233.0 23.0 229 29-303 1-235 (236)
45 cd02524 G1P_cytidylyltransfera 99.9 1.2E-26 2.6E-31 236.6 21.8 225 31-301 1-245 (253)
46 cd04181 NTP_transferase NTP_tr 99.9 3.8E-26 8.1E-31 226.4 20.7 215 31-289 1-217 (217)
47 cd06426 NTP_transferase_like_2 99.9 1.1E-25 2.4E-30 224.1 22.1 219 31-298 1-220 (220)
48 cd06915 NTP_transferase_WcbM_l 99.9 3.4E-25 7.3E-30 220.4 21.6 220 31-297 1-222 (223)
49 COG1210 GalU UDP-glucose pyrop 99.9 9.1E-24 2E-28 208.5 18.2 244 27-304 3-272 (291)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 1.8E-23 4E-28 205.5 15.1 186 31-288 1-200 (200)
51 cd02523 PC_cytidylyltransferas 99.9 7.4E-23 1.6E-27 205.3 17.7 223 31-297 1-228 (229)
52 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 5.1E-21 1.1E-25 192.1 19.1 218 31-294 1-230 (231)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 1.9E-21 4.2E-26 200.4 15.8 187 29-245 1-202 (274)
54 TIGR01479 GMP_PMI mannose-1-ph 99.8 4.4E-19 9.6E-24 195.7 17.4 236 29-297 1-280 (468)
55 cd02540 GT2_GlmU_N_bac N-termi 99.8 1.1E-18 2.4E-23 174.6 18.5 218 31-292 1-227 (229)
56 PRK05450 3-deoxy-manno-octulos 99.8 1.6E-17 3.4E-22 168.4 22.9 236 28-300 2-243 (245)
57 PRK11132 cysE serine acetyltra 99.8 1.6E-19 3.5E-24 183.0 6.8 174 256-439 35-240 (273)
58 COG1213 Predicted sugar nucleo 99.8 1.3E-17 2.8E-22 162.3 15.3 222 27-305 2-232 (239)
59 cd02517 CMP-KDO-Synthetase CMP 99.7 3.7E-16 8.1E-21 157.7 21.9 227 29-299 2-238 (239)
60 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 2.5E-16 5.4E-21 157.8 15.9 151 277-439 42-207 (231)
61 PRK13368 3-deoxy-manno-octulos 99.7 2.4E-15 5.1E-20 151.8 21.4 228 28-299 2-236 (238)
62 PRK15460 cpsB mannose-1-phosph 99.6 2.4E-15 5.3E-20 164.8 16.7 166 27-208 4-187 (478)
63 cd05636 LbH_G1P_TT_C_like Puta 99.6 5.4E-15 1.2E-19 140.7 16.5 119 323-441 13-156 (163)
64 cd04745 LbH_paaY_like paaY-lik 99.6 1.7E-14 3.8E-19 136.1 15.5 110 330-439 3-121 (155)
65 COG0836 {ManC} Mannose-1-phosp 99.6 7E-15 1.5E-19 149.0 13.4 246 28-298 1-282 (333)
66 TIGR02287 PaaY phenylacetic ac 99.6 1.1E-14 2.4E-19 141.8 14.0 110 329-438 10-128 (192)
67 cd05636 LbH_G1P_TT_C_like Puta 99.6 2.6E-14 5.7E-19 136.0 15.5 115 321-435 29-162 (163)
68 cd04646 LbH_Dynactin_6 Dynacti 99.6 2.5E-14 5.4E-19 136.2 15.2 110 330-439 2-126 (164)
69 PRK13627 carnitine operon prot 99.6 3.1E-14 6.8E-19 139.0 14.6 108 329-436 12-128 (196)
70 COG0663 PaaY Carbonic anhydras 99.6 3.3E-14 7.1E-19 133.4 12.5 109 330-438 14-131 (176)
71 PLN02472 uncharacterized prote 99.6 7.7E-14 1.7E-18 140.5 15.7 110 330-439 62-186 (246)
72 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 6.5E-14 1.4E-18 142.9 15.0 122 321-442 23-166 (254)
73 PLN02296 carbonate dehydratase 99.5 6.7E-14 1.5E-18 142.8 14.8 110 330-439 55-179 (269)
74 TIGR01852 lipid_A_lpxA acyl-[a 99.5 1.3E-13 2.7E-18 140.9 15.5 120 322-441 23-164 (254)
75 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.5E-13 3.3E-18 140.2 15.9 120 323-442 7-148 (254)
76 cd04650 LbH_FBP Ferripyochelin 99.5 1.9E-13 4.1E-18 128.8 15.2 110 330-439 3-121 (154)
77 TIGR03308 phn_thr-fam phosphon 99.5 1.9E-13 4.2E-18 134.5 14.7 107 330-437 5-143 (204)
78 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 4.1E-13 9E-18 131.3 16.4 80 324-403 12-92 (193)
79 cd04645 LbH_gamma_CA_like Gamm 99.5 3.5E-13 7.7E-18 126.8 15.0 110 330-439 2-120 (153)
80 TIGR01852 lipid_A_lpxA acyl-[a 99.5 4.3E-13 9.3E-18 136.9 16.6 117 323-439 6-144 (254)
81 PRK05289 UDP-N-acetylglucosami 99.5 2.9E-13 6.2E-18 138.7 14.5 97 326-422 13-131 (262)
82 COG4750 LicC CTP:phosphocholin 99.5 7.8E-14 1.7E-18 130.6 8.3 106 29-143 1-106 (231)
83 PRK05289 UDP-N-acetylglucosami 99.5 5.2E-13 1.1E-17 136.8 14.2 122 320-441 25-168 (262)
84 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 1.8E-12 4E-17 136.4 17.8 71 324-394 100-172 (324)
85 cd03359 LbH_Dynactin_5 Dynacti 99.4 1.7E-12 3.6E-17 123.3 15.2 106 334-439 8-132 (161)
86 PRK12461 UDP-N-acetylglucosami 99.4 1.4E-12 3.1E-17 132.7 15.2 70 326-395 10-93 (255)
87 TIGR00454 conserved hypothetic 99.4 2.3E-12 5.1E-17 124.9 15.8 115 29-156 1-117 (183)
88 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 1.6E-12 3.5E-17 136.9 15.6 119 321-439 115-260 (324)
89 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 2E-12 4.2E-17 132.6 15.6 44 334-377 136-180 (338)
90 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 1.5E-12 3.3E-17 133.4 14.1 93 330-422 114-232 (338)
91 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 1.6E-12 3.4E-17 131.0 13.9 108 330-438 97-215 (269)
92 cd03350 LbH_THP_succinylT 2,3, 99.4 3.2E-12 7E-17 118.4 14.3 74 364-437 33-116 (139)
93 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.8E-12 8.3E-17 135.5 16.3 88 324-411 109-218 (343)
94 cd03358 LbH_WxcM_N_like WcxM-l 99.4 2.2E-12 4.7E-17 115.8 12.2 100 330-430 1-101 (119)
95 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 2.1E-12 4.5E-17 108.1 11.0 79 348-427 2-80 (81)
96 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.5E-12 7.6E-17 135.8 15.3 116 323-438 126-267 (343)
97 cd05787 LbH_eIF2B_epsilon eIF- 99.4 2.2E-12 4.7E-17 107.0 10.7 78 348-425 2-79 (79)
98 PRK12461 UDP-N-acetylglucosami 99.4 4E-12 8.6E-17 129.4 14.5 119 321-439 23-162 (255)
99 PRK14353 glmU bifunctional N-a 99.4 5.1E-12 1.1E-16 139.5 15.9 110 328-438 287-416 (446)
100 cd00710 LbH_gamma_CA Gamma car 99.4 8.9E-12 1.9E-16 119.1 15.5 98 330-428 5-113 (167)
101 cd04646 LbH_Dynactin_6 Dynacti 99.4 8.5E-12 1.8E-16 118.8 15.1 104 323-431 13-130 (164)
102 cd03356 LbH_G1P_AT_C_like Left 99.4 3.3E-12 7.1E-17 106.2 10.7 77 348-424 2-78 (79)
103 cd04745 LbH_paaY_like paaY-lik 99.4 1.6E-11 3.4E-16 115.9 16.0 105 323-438 14-126 (155)
104 cd00710 LbH_gamma_CA Gamma car 99.4 1.6E-11 3.6E-16 117.3 16.0 115 324-439 17-141 (167)
105 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 8.7E-12 1.9E-16 125.6 13.7 107 324-436 109-232 (269)
106 TIGR01173 glmU UDP-N-acetylglu 99.4 6.6E-12 1.4E-16 138.6 14.1 78 323-401 275-353 (451)
107 PLN02917 CMP-KDO synthetase 99.3 1.6E-10 3.4E-15 120.3 22.7 235 27-301 46-287 (293)
108 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 8.1E-12 1.8E-16 127.0 12.7 74 364-437 134-217 (272)
109 PLN02296 carbonate dehydratase 99.3 1.7E-11 3.7E-16 125.1 14.7 101 323-428 66-180 (269)
110 TIGR02287 PaaY phenylacetic ac 99.3 2.5E-11 5.3E-16 118.3 14.8 100 323-427 22-129 (192)
111 cd04650 LbH_FBP Ferripyochelin 99.3 4.5E-11 9.7E-16 112.7 16.0 101 323-428 14-122 (154)
112 cd04649 LbH_THP_succinylT_puta 99.3 2.7E-11 5.9E-16 110.9 13.3 101 334-437 2-112 (147)
113 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 4.6E-11 9.9E-16 117.9 16.1 69 326-394 18-107 (205)
114 COG1043 LpxA Acyl-[acyl carrie 99.3 9.3E-12 2E-16 121.0 10.7 119 321-439 9-149 (260)
115 cd03359 LbH_Dynactin_5 Dynacti 99.3 3.6E-11 7.7E-16 114.2 14.5 103 325-438 19-137 (161)
116 PF12804 NTP_transf_3: MobA-li 99.3 2.7E-11 5.9E-16 114.4 13.6 110 31-156 1-114 (160)
117 cd03350 LbH_THP_succinylT 2,3, 99.3 4.7E-11 1E-15 110.6 14.7 105 325-437 11-125 (139)
118 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 3.1E-11 6.8E-16 118.0 14.2 50 327-377 33-82 (193)
119 TIGR03570 NeuD_NnaD sugar O-ac 99.3 3.9E-11 8.5E-16 117.2 14.5 90 340-429 94-186 (201)
120 PLN02472 uncharacterized prote 99.3 4.2E-11 9.1E-16 120.8 14.9 106 323-439 73-192 (246)
121 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 2.6E-11 5.6E-16 101.5 10.9 79 330-409 2-80 (81)
122 KOG1461 Translation initiation 99.3 5.9E-12 1.3E-16 136.6 8.8 67 327-394 333-399 (673)
123 cd03360 LbH_AT_putative Putati 99.3 5.4E-11 1.2E-15 115.2 14.8 67 363-429 115-183 (197)
124 PRK14355 glmU bifunctional N-a 99.3 4.2E-11 9E-16 132.7 14.8 109 334-442 256-371 (459)
125 COG0663 PaaY Carbonic anhydras 99.3 5.6E-11 1.2E-15 111.8 13.2 108 321-439 23-138 (176)
126 PRK14356 glmU bifunctional N-a 99.3 3.3E-11 7.1E-16 133.4 13.7 75 325-400 285-360 (456)
127 cd05824 LbH_M1P_guanylylT_C Ma 99.3 3.2E-11 6.9E-16 100.6 10.3 63 362-424 17-79 (80)
128 cd04651 LbH_G1P_AT_C Glucose-1 99.3 3.5E-11 7.5E-16 105.8 10.8 79 352-432 2-80 (104)
129 cd03356 LbH_G1P_AT_C_like Left 99.3 4.4E-11 9.5E-16 99.4 10.6 77 329-406 1-78 (79)
130 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 7.7E-11 1.7E-15 119.9 13.7 107 326-437 108-236 (272)
131 cd04645 LbH_gamma_CA_like Gamm 99.2 1.7E-10 3.7E-15 108.6 14.6 100 323-427 13-120 (153)
132 TIGR03308 phn_thr-fam phosphon 99.2 9.3E-11 2E-15 115.5 13.1 112 327-439 19-155 (204)
133 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 2.2E-10 4.8E-15 113.1 15.4 64 331-394 5-70 (205)
134 COG1207 GlmU N-acetylglucosami 99.2 3.8E-11 8.2E-16 125.8 10.0 116 321-437 262-389 (460)
135 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.1E-10 2.4E-15 97.4 10.9 77 330-406 2-79 (80)
136 PRK14358 glmU bifunctional N-a 99.2 1.2E-10 2.6E-15 129.8 14.3 117 322-439 283-424 (481)
137 PRK14352 glmU bifunctional N-a 99.2 1.8E-10 3.9E-15 128.5 15.2 116 323-439 285-424 (482)
138 cd04651 LbH_G1P_AT_C Glucose-1 99.2 1.7E-10 3.6E-15 101.4 11.8 79 334-414 2-80 (104)
139 TIGR03310 matur_ygfJ molybdenu 99.2 3.3E-10 7.1E-15 109.8 15.1 113 31-156 2-118 (188)
140 TIGR00466 kdsB 3-deoxy-D-manno 99.2 1.8E-09 3.9E-14 109.2 21.0 231 31-294 2-237 (238)
141 PRK14360 glmU bifunctional N-a 99.2 8.3E-11 1.8E-15 129.9 12.3 66 346-411 314-380 (450)
142 PRK10502 putative acyl transfe 99.2 1.5E-10 3.2E-15 112.2 12.2 111 327-439 51-171 (182)
143 cd05635 LbH_unknown Uncharacte 99.2 2.5E-10 5.4E-15 99.7 12.2 86 325-412 9-95 (101)
144 PRK14359 glmU bifunctional N-a 99.2 1.3E-10 2.8E-15 127.6 12.7 84 345-428 298-399 (430)
145 cd04182 GT_2_like_f GT_2_like_ 99.2 3.3E-10 7.1E-15 109.2 14.0 112 29-155 1-118 (186)
146 PRK13627 carnitine operon prot 99.2 3.4E-10 7.4E-15 110.7 13.8 104 324-438 25-136 (196)
147 PRK09677 putative lipopolysacc 99.2 5.1E-10 1.1E-14 109.4 14.6 114 325-438 41-176 (192)
148 COG2266 GTP:adenosylcobinamide 99.2 2.3E-10 4.9E-15 107.0 11.3 109 29-154 1-112 (177)
149 cd03360 LbH_AT_putative Putati 99.2 4.6E-10 1E-14 108.6 13.8 93 340-437 91-185 (197)
150 cd05787 LbH_eIF2B_epsilon eIF- 99.2 2.5E-10 5.4E-15 94.6 10.0 72 365-437 2-73 (79)
151 PRK09451 glmU bifunctional N-a 99.1 1.9E-10 4.1E-15 127.4 12.1 72 323-395 279-351 (456)
152 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 3.2E-10 6.9E-15 115.3 12.4 39 397-437 251-289 (341)
153 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.1 4.5E-10 9.7E-15 112.7 12.7 100 323-429 94-203 (231)
154 COG1208 GCD1 Nucleoside-diphos 99.1 3.9E-10 8.4E-15 120.7 12.7 100 322-427 256-355 (358)
155 KOG3121 Dynactin, subunit p25 99.1 8.5E-11 1.8E-15 104.8 6.2 97 347-443 35-148 (184)
156 PRK14354 glmU bifunctional N-a 99.1 6.8E-10 1.5E-14 123.0 15.0 84 325-409 281-381 (458)
157 TIGR03570 NeuD_NnaD sugar O-ac 99.1 7.8E-10 1.7E-14 108.0 13.4 105 328-439 94-200 (201)
158 PRK14357 glmU bifunctional N-a 99.1 3.4E-10 7.3E-15 125.1 11.8 64 347-410 308-372 (448)
159 TIGR01172 cysE serine O-acetyl 99.1 7.1E-10 1.5E-14 105.4 12.2 99 327-438 55-159 (162)
160 cd04649 LbH_THP_succinylT_puta 99.1 1.3E-09 2.8E-14 100.0 12.4 92 327-428 13-109 (147)
161 TIGR03535 DapD_actino 2,3,4,5- 99.1 9.9E-10 2.1E-14 111.3 12.8 103 331-438 151-265 (319)
162 PRK09527 lacA galactoside O-ac 99.1 9.4E-10 2E-14 107.9 12.3 110 330-439 58-178 (203)
163 cd03358 LbH_WxcM_N_like WcxM-l 99.1 7.8E-10 1.7E-14 99.1 10.7 89 349-437 2-102 (119)
164 cd02513 CMP-NeuAc_Synthase CMP 99.1 5.6E-09 1.2E-13 104.0 17.1 114 29-156 2-126 (223)
165 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 2E-09 4.2E-14 109.7 12.9 108 330-443 175-289 (341)
166 COG1043 LpxA Acyl-[acyl carrie 99.0 6.5E-10 1.4E-14 108.3 9.0 103 335-437 5-123 (260)
167 PLN02694 serine O-acetyltransf 99.0 9.4E-10 2E-14 112.1 10.1 74 363-439 181-259 (294)
168 COG2171 DapD Tetrahydrodipicol 99.0 1.4E-09 3.1E-14 108.0 10.1 106 332-437 107-223 (271)
169 cd05635 LbH_unknown Uncharacte 99.0 6.5E-09 1.4E-13 90.8 12.3 82 344-428 10-93 (101)
170 cd03357 LbH_MAT_GAT Maltose O- 99.0 6.8E-09 1.5E-13 99.4 13.0 96 343-438 60-164 (169)
171 cd02503 MobA MobA catalyzes th 99.0 4.1E-09 8.9E-14 101.6 11.3 105 29-153 1-109 (181)
172 PRK10092 maltose O-acetyltrans 99.0 1E-08 2.2E-13 99.3 13.6 98 341-438 69-175 (183)
173 cd04647 LbH_MAT_like Maltose O 99.0 7.7E-09 1.7E-13 91.0 11.6 68 362-429 21-91 (109)
174 PRK05293 glgC glucose-1-phosph 98.9 4.5E-09 9.8E-14 113.6 12.2 92 340-434 271-362 (380)
175 TIGR00453 ispD 2-C-methyl-D-er 98.9 2.3E-08 4.9E-13 99.5 15.4 111 31-155 2-118 (217)
176 cd04647 LbH_MAT_like Maltose O 98.9 9.8E-09 2.1E-13 90.3 10.8 102 327-438 1-104 (109)
177 PRK09382 ispDF bifunctional 2- 98.9 9.2E-08 2E-12 102.8 20.0 116 27-155 4-123 (378)
178 PRK09677 putative lipopolysacc 98.9 1.2E-08 2.7E-13 99.7 12.0 95 344-438 42-166 (192)
179 cd03354 LbH_SAT Serine acetylt 98.9 1.5E-08 3.3E-13 88.4 11.2 64 363-431 23-89 (101)
180 cd00208 LbetaH Left-handed par 98.9 1.3E-08 2.8E-13 83.6 9.8 75 347-429 2-77 (78)
181 cd03357 LbH_MAT_GAT Maltose O- 98.9 1.7E-08 3.7E-13 96.6 11.9 76 363-438 63-154 (169)
182 PRK09527 lacA galactoside O-ac 98.9 2.4E-08 5.1E-13 98.1 13.0 77 362-438 75-167 (203)
183 PLN02241 glucose-1-phosphate a 98.9 9.6E-09 2.1E-13 113.1 11.0 100 328-434 316-435 (436)
184 PRK10502 putative acyl transfe 98.9 2.1E-08 4.6E-13 97.2 12.0 93 346-438 52-160 (182)
185 TIGR02092 glgD glucose-1-phosp 98.9 9.6E-09 2.1E-13 110.7 10.6 80 350-432 277-356 (369)
186 TIGR03202 pucB xanthine dehydr 98.9 3.3E-08 7.1E-13 96.3 13.3 118 29-155 1-123 (190)
187 PRK00155 ispD 2-C-methyl-D-ery 98.9 4.4E-08 9.5E-13 98.2 14.4 116 27-155 2-123 (227)
188 TIGR02665 molyb_mobA molybdopt 98.9 3.9E-08 8.4E-13 95.2 13.6 110 29-155 1-115 (186)
189 KOG1462 Translation initiation 98.8 7.9E-09 1.7E-13 106.9 9.0 81 330-411 337-417 (433)
190 PRK00317 mobA molybdopterin-gu 98.8 3.2E-08 6.9E-13 96.6 13.0 109 27-154 2-115 (193)
191 TIGR02091 glgC glucose-1-phosp 98.8 1.4E-08 3E-13 109.0 11.4 82 347-430 279-360 (361)
192 PRK10092 maltose O-acetyltrans 98.8 3.4E-08 7.4E-13 95.6 12.7 91 340-438 60-165 (183)
193 cd02516 CDP-ME_synthetase CDP- 98.8 4.9E-08 1.1E-12 96.9 14.2 115 30-155 2-123 (218)
194 COG2068 Uncharacterized MobA-r 98.8 3.9E-08 8.5E-13 94.6 12.6 118 26-156 3-125 (199)
195 cd00208 LbetaH Left-handed par 98.8 2.6E-08 5.5E-13 81.8 9.9 73 363-435 1-77 (78)
196 PRK11132 cysE serine acetyltra 98.8 7E-08 1.5E-12 98.5 15.0 92 326-429 140-236 (273)
197 PLN02357 serine acetyltransfer 98.8 1.8E-08 3.8E-13 105.6 10.4 44 395-438 277-324 (360)
198 cd05825 LbH_wcaF_like wcaF-lik 98.8 5.7E-08 1.2E-12 85.7 11.8 82 346-429 4-89 (107)
199 PRK02726 molybdopterin-guanine 98.8 9.6E-08 2.1E-12 94.0 14.5 111 26-154 5-119 (200)
200 COG0448 GlgC ADP-glucose pyrop 98.8 1.7E-08 3.8E-13 106.0 9.4 93 337-432 271-363 (393)
201 TIGR01208 rmlA_long glucose-1- 98.8 3.5E-08 7.6E-13 105.6 11.9 89 336-431 245-339 (353)
202 PRK02862 glgC glucose-1-phosph 98.8 1.8E-08 3.8E-13 110.8 9.5 100 327-428 308-428 (429)
203 PLN02728 2-C-methyl-D-erythrit 98.8 9.5E-08 2.1E-12 97.3 13.8 119 25-156 21-146 (252)
204 PLN02694 serine O-acetyltransf 98.8 3.4E-08 7.4E-13 100.8 10.3 83 327-412 160-246 (294)
205 KOG3121 Dynactin, subunit p25 98.8 1.5E-08 3.3E-13 90.5 6.5 105 324-439 30-150 (184)
206 PRK00725 glgC glucose-1-phosph 98.7 2.7E-08 5.8E-13 109.2 9.7 73 358-432 323-395 (425)
207 cd02518 GT2_SpsF SpsF is a gly 98.7 8.5E-08 1.8E-12 96.5 12.4 109 31-156 2-116 (233)
208 PRK10191 putative acyl transfe 98.7 7.4E-08 1.6E-12 89.6 10.9 31 398-428 94-124 (146)
209 TIGR03535 DapD_actino 2,3,4,5- 98.7 9.7E-08 2.1E-12 97.0 12.5 98 337-438 151-259 (319)
210 PLN02739 serine acetyltransfer 98.7 4.8E-08 1E-12 101.6 10.4 43 397-439 258-304 (355)
211 cd03354 LbH_SAT Serine acetylt 98.7 1E-07 2.2E-12 83.1 10.9 61 329-394 4-69 (101)
212 PRK13385 2-C-methyl-D-erythrit 98.7 1.7E-07 3.7E-12 94.2 13.7 119 28-156 2-126 (230)
213 COG1045 CysE Serine acetyltran 98.7 5.8E-08 1.3E-12 92.6 9.5 93 333-439 67-166 (194)
214 cd03349 LbH_XAT Xenobiotic acy 98.7 9.8E-08 2.1E-12 89.0 10.8 46 394-439 71-120 (145)
215 cd04180 UGPase_euk_like Eukary 98.7 6.2E-08 1.3E-12 99.4 10.1 120 30-156 2-133 (266)
216 KOG4042 Dynactin subunit p27/W 98.7 1.8E-08 3.8E-13 90.9 4.8 108 328-435 9-134 (190)
217 cd05825 LbH_wcaF_like wcaF-lik 98.7 1.7E-07 3.6E-12 82.7 11.1 34 327-360 3-38 (107)
218 PRK00844 glgC glucose-1-phosph 98.7 8.2E-08 1.8E-12 104.9 10.9 71 359-431 312-382 (407)
219 PRK10191 putative acyl transfe 98.7 1.7E-07 3.7E-12 87.2 11.0 13 330-342 44-56 (146)
220 PRK14489 putative bifunctional 98.7 3.1E-07 6.8E-12 98.8 14.5 113 28-155 5-120 (366)
221 COG2171 DapD Tetrahydrodipicol 98.7 8.9E-08 1.9E-12 95.4 9.4 72 321-392 114-195 (271)
222 PLN02739 serine acetyltransfer 98.7 1E-07 2.2E-12 99.2 10.1 38 400-437 255-292 (355)
223 TIGR03584 PseF pseudaminic aci 98.7 1.2E-06 2.7E-11 87.6 17.6 205 31-297 2-216 (222)
224 TIGR01172 cysE serine O-acetyl 98.6 2.1E-07 4.5E-12 88.5 11.3 34 403-436 114-147 (162)
225 KOG1460 GDP-mannose pyrophosph 98.6 1.2E-07 2.6E-12 95.0 9.0 74 340-413 283-357 (407)
226 cd04193 UDPGlcNAc_PPase UDPGlc 98.6 1.4E-06 2.9E-11 91.9 17.2 166 25-207 12-222 (323)
227 COG1212 KdsB CMP-2-keto-3-deox 98.6 7.8E-06 1.7E-10 79.6 20.7 237 27-301 2-242 (247)
228 PLN02357 serine acetyltransfer 98.6 2.7E-07 5.8E-12 96.8 11.3 81 328-413 227-313 (360)
229 COG0110 WbbJ Acetyltransferase 98.5 4.7E-07 1E-11 88.1 10.9 96 344-439 66-171 (190)
230 PF01128 IspD: 2-C-methyl-D-er 98.5 9.4E-07 2E-11 88.0 11.7 112 29-155 1-119 (221)
231 PRK00560 molybdopterin-guanine 98.4 1.4E-06 3.1E-11 85.4 11.0 53 25-83 5-58 (196)
232 COG0746 MobA Molybdopterin-gua 98.4 1.7E-06 3.7E-11 84.4 9.8 107 27-154 3-113 (192)
233 PRK14490 putative bifunctional 98.3 3.1E-06 6.7E-11 91.2 11.8 108 26-152 172-283 (369)
234 KOG1322 GDP-mannose pyrophosph 98.3 7.8E-07 1.7E-11 90.7 6.4 88 325-412 262-350 (371)
235 KOG4750 Serine O-acetyltransfe 98.3 1.1E-06 2.4E-11 84.8 6.7 92 334-439 149-247 (269)
236 COG1211 IspD 4-diphosphocytidy 98.3 1.1E-05 2.4E-10 80.3 13.7 114 27-151 3-123 (230)
237 cd03349 LbH_XAT Xenobiotic acy 98.3 4.2E-06 9.2E-11 78.0 10.1 91 348-438 4-109 (145)
238 PTZ00339 UDP-N-acetylglucosami 98.3 2E-05 4.3E-10 86.9 16.5 166 25-207 103-316 (482)
239 COG0110 WbbJ Acetyltransferase 98.2 7.8E-06 1.7E-10 79.4 11.0 76 362-437 67-159 (190)
240 PRK14500 putative bifunctional 98.2 8.8E-06 1.9E-10 86.5 11.7 110 26-153 158-270 (346)
241 TIGR02353 NRPS_term_dom non-ri 98.2 5.6E-06 1.2E-10 96.0 10.8 70 363-437 617-686 (695)
242 TIGR02353 NRPS_term_dom non-ri 98.2 6E-06 1.3E-10 95.7 10.5 67 362-433 131-197 (695)
243 KOG4042 Dynactin subunit p27/W 98.2 2.3E-06 5E-11 77.4 4.7 105 323-438 22-143 (190)
244 COG1045 CysE Serine acetyltran 98.0 1.5E-05 3.3E-10 76.2 8.0 83 327-412 67-153 (194)
245 PF02348 CTP_transf_3: Cytidyl 97.8 0.00036 7.9E-09 69.1 14.5 113 31-157 2-118 (217)
246 KOG4750 Serine O-acetyltransfe 97.7 0.00011 2.3E-09 71.4 7.2 59 380-438 175-236 (269)
247 COG4801 Predicted acyltransfer 97.4 0.00058 1.3E-08 66.6 7.8 72 357-428 28-100 (277)
248 PLN02474 UTP--glucose-1-phosph 97.3 0.04 8.8E-07 60.7 22.0 161 27-207 78-277 (469)
249 COG1083 NeuA CMP-N-acetylneura 97.3 0.011 2.4E-07 57.6 15.4 212 27-301 2-222 (228)
250 PF00132 Hexapep: Bacterial tr 97.2 0.00019 4.2E-09 49.9 1.8 32 398-429 3-34 (36)
251 PF14602 Hexapep_2: Hexapeptid 97.2 0.00054 1.2E-08 47.2 3.8 29 399-429 4-32 (34)
252 cd00897 UGPase_euk Eukaryotic 97.1 0.014 3.1E-07 60.8 14.8 160 28-207 3-201 (300)
253 PF14602 Hexapep_2: Hexapeptid 97.0 0.00086 1.9E-08 46.2 3.5 12 365-376 4-15 (34)
254 PF00132 Hexapep: Bacterial tr 97.0 0.00036 7.7E-09 48.5 1.6 31 404-434 3-33 (36)
255 COG4801 Predicted acyltransfer 96.9 0.0029 6.2E-08 61.9 7.4 90 323-413 12-103 (277)
256 cd06424 UGGPase UGGPase cataly 96.8 0.015 3.4E-07 60.8 12.4 132 30-169 2-178 (315)
257 PRK00576 molybdopterin-guanine 96.6 0.006 1.3E-07 58.6 7.5 91 49-154 3-101 (178)
258 PLN02435 probable UDP-N-acetyl 96.5 0.061 1.3E-06 59.6 15.4 198 26-250 114-364 (493)
259 PRK13412 fkp bifunctional fuco 96.3 0.015 3.3E-07 69.1 9.8 138 132-296 154-306 (974)
260 COG1861 SpsF Spore coat polysa 96.2 0.064 1.4E-06 52.7 11.7 110 29-156 3-120 (241)
261 PLN02830 UDP-sugar pyrophospho 96.0 0.21 4.5E-06 57.1 16.2 137 27-171 127-311 (615)
262 COG4284 UDP-glucose pyrophosph 96.0 0.12 2.6E-06 56.3 13.6 164 26-207 103-304 (472)
263 PF01704 UDPGP: UTP--glucose-1 95.1 0.5 1.1E-05 51.8 15.0 163 25-207 53-256 (420)
264 TIGR03552 F420_cofC 2-phospho- 94.9 0.13 2.8E-06 50.1 9.0 86 58-154 29-117 (195)
265 PF07959 Fucokinase: L-fucokin 94.9 0.055 1.2E-06 59.3 6.8 51 188-246 96-154 (414)
266 PF07959 Fucokinase: L-fucokin 94.1 0.094 2E-06 57.5 6.3 48 353-400 275-322 (414)
267 cd00761 Glyco_tranf_GTA_type G 92.9 1.1 2.4E-05 39.7 10.5 97 53-154 2-103 (156)
268 PF00535 Glycos_transf_2: Glyc 81.0 6 0.00013 35.8 7.4 99 53-156 3-106 (169)
269 PRK13412 fkp bifunctional fuco 77.4 3.2 6.9E-05 50.0 5.2 38 360-397 334-372 (974)
270 PF04519 Bactofilin: Polymer-f 72.1 7.6 0.00016 33.5 5.0 58 368-428 36-94 (101)
271 cd04195 GT2_AmsE_like GT2_AmsE 69.4 59 0.0013 30.7 11.3 98 52-155 2-107 (201)
272 cd06423 CESA_like CESA_like is 68.5 63 0.0014 28.9 10.8 99 53-155 2-105 (180)
273 cd04186 GT_2_like_c Subfamily 67.0 68 0.0015 28.8 10.7 95 53-155 2-101 (166)
274 cd06439 CESA_like_1 CESA_like_ 66.1 78 0.0017 31.2 11.8 104 43-153 22-134 (251)
275 COG1664 CcmA Integral membrane 66.0 28 0.0006 32.5 7.6 98 332-433 22-120 (146)
276 cd02510 pp-GalNAc-T pp-GalNAc- 61.7 58 0.0012 33.6 10.1 101 53-156 3-111 (299)
277 cd04188 DPG_synthase DPG_synth 61.5 57 0.0012 31.4 9.5 98 53-154 2-108 (211)
278 cd06438 EpsO_like EpsO protein 58.8 1.1E+02 0.0024 28.6 10.8 96 53-154 2-107 (183)
279 cd06427 CESA_like_2 CESA_like_ 56.5 1.1E+02 0.0024 30.2 10.8 99 53-155 6-111 (241)
280 KOG2388 UDP-N-acetylglucosamin 55.9 32 0.0007 37.9 7.0 71 23-96 92-177 (477)
281 PF04519 Bactofilin: Polymer-f 51.8 24 0.00052 30.3 4.4 67 344-412 29-96 (101)
282 cd06433 GT_2_WfgS_like WfgS an 50.3 1.1E+02 0.0024 28.5 9.2 95 53-155 3-102 (202)
283 cd02511 Beta4Glucosyltransfera 46.8 1.4E+02 0.003 29.4 9.6 91 52-154 4-96 (229)
284 cd02525 Succinoglycan_BP_ExoA 46.2 1.4E+02 0.0031 28.9 9.7 97 53-155 5-108 (249)
285 cd04179 DPM_DPG-synthase_like 45.3 1.6E+02 0.0034 27.2 9.4 97 53-154 2-105 (185)
286 cd06434 GT2_HAS Hyaluronan syn 44.9 2.2E+02 0.0048 27.5 10.8 96 52-154 4-103 (235)
287 PRK10018 putative glycosyl tra 41.6 2.7E+02 0.0059 28.7 11.1 96 53-155 10-112 (279)
288 COG1664 CcmA Integral membrane 41.3 79 0.0017 29.5 6.3 72 341-413 47-118 (146)
289 COG0381 WecB UDP-N-acetylgluco 41.1 99 0.0021 33.5 7.8 89 65-156 22-116 (383)
290 PLN02726 dolichyl-phosphate be 40.4 2.1E+02 0.0046 28.2 10.0 100 53-155 14-120 (243)
291 cd04184 GT2_RfbC_Mx_like Myxoc 39.4 2.8E+02 0.0061 26.0 10.3 98 53-155 6-110 (202)
292 cd06435 CESA_NdvC_like NdvC_li 38.7 3E+02 0.0065 26.6 10.7 95 53-153 3-109 (236)
293 cd04196 GT_2_like_d Subfamily 38.5 2.3E+02 0.0049 26.7 9.5 92 53-152 3-103 (214)
294 cd04185 GT_2_like_b Subfamily 36.7 3.1E+02 0.0067 25.8 10.1 98 53-154 2-105 (202)
295 cd06420 GT2_Chondriotin_Pol_N 36.0 3E+02 0.0065 25.2 9.7 97 53-153 2-104 (182)
296 cd06442 DPM1_like DPM1_like re 35.8 1.8E+02 0.0038 27.9 8.4 97 53-154 2-104 (224)
297 PTZ00260 dolichyl-phosphate be 34.9 2.9E+02 0.0063 29.2 10.3 98 53-155 75-189 (333)
298 cd02526 GT2_RfbF_like RfbF is 34.2 3.9E+02 0.0085 25.7 10.7 87 57-150 7-97 (237)
299 cd04187 DPM1_like_bac Bacteria 33.9 1.7E+02 0.0036 27.2 7.6 95 53-152 2-104 (181)
300 COG2179 Predicted hydrolase of 33.7 2.7E+02 0.0058 26.7 8.4 100 53-173 39-141 (175)
301 PRK11204 N-glycosyltransferase 32.1 2.4E+02 0.0051 30.6 9.4 99 52-155 58-161 (420)
302 cd04192 GT_2_like_e Subfamily 31.0 3.5E+02 0.0076 25.7 9.6 98 53-155 2-109 (229)
303 TIGR00285 DNA-binding protein 29.6 63 0.0014 27.3 3.2 29 54-82 4-34 (87)
304 TIGR02990 ectoine_eutA ectoine 28.0 6.2E+02 0.013 25.5 10.8 116 27-152 70-203 (239)
305 PRK10714 undecaprenyl phosphat 27.7 3.2E+02 0.007 28.7 9.2 99 52-154 10-116 (325)
306 COG4917 EutP Ethanolamine util 27.2 2E+02 0.0044 26.3 6.2 70 25-94 63-143 (148)
307 PRK14583 hmsR N-glycosyltransf 27.0 4.2E+02 0.009 29.2 10.3 99 52-155 79-182 (444)
308 cd02522 GT_2_like_a GT_2_like_ 25.8 4.6E+02 0.0099 24.9 9.4 89 53-153 4-97 (221)
309 cd02520 Glucosylceramide_synth 25.7 4.1E+02 0.0089 25.0 8.9 94 52-152 5-110 (196)
310 cd06421 CESA_CelA_like CESA_Ce 25.0 6.1E+02 0.013 24.2 11.0 98 52-155 5-111 (234)
311 KOG2978 Dolichol-phosphate man 21.7 7.8E+02 0.017 24.2 10.2 92 58-155 17-115 (238)
312 COG2984 ABC-type uncharacteriz 21.5 7.4E+02 0.016 26.3 10.0 90 57-156 140-238 (322)
313 cd06913 beta3GnTL1_like Beta 1 21.3 6.4E+02 0.014 24.1 9.4 98 53-155 2-111 (219)
314 COG1581 Ssh10b Archaeal DNA-bi 21.0 1.4E+02 0.003 25.2 3.7 33 51-83 4-38 (91)
315 PF01983 CofC: Guanylyl transf 20.3 1.1E+02 0.0024 30.5 3.6 107 29-153 1-113 (217)
No 1
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-115 Score=927.36 Aligned_cols=551 Identities=52% Similarity=0.854 Sum_probs=476.6
Q ss_pred CcccchhHHHHHHHhccCCCCCcccCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEE
Q 007078 1 MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVF 80 (619)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv 80 (619)
|++++|+ ++|...-++...+. ++++|||+||++|.+||+|+|.++|++||||+|.|||+|+|++|.++||+||||+
T Consensus 1 M~~~k~~--~~~~~~~~~~~~~~--~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvf 76 (673)
T KOG1461|consen 1 MAKKKKR--PAALGETGKEENFR--EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVF 76 (673)
T ss_pred CCcccCc--ccccccCccccccc--ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEE
Confidence 6777776 22222222222222 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccC
Q 007078 81 CCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKD 160 (619)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d 160 (619)
|+.|+.+|.+|+++++|...+.+.+..|.+.+++++|||||++++++++++||+|++||+++|++|.++|++||.|||.|
T Consensus 77 c~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~D 156 (673)
T KOG1461|consen 77 CSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKED 156 (673)
T ss_pred ecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhC
Confidence 99999999999999999888777788888788999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEec
Q 007078 161 NNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (619)
Q Consensus 161 ~~a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~ic 240 (619)
|+++|||++++.+ +|.++++.++++|+.|+||+||++.. ...+.+.+++++|..++++.+|+||+||+|+||
T Consensus 157 k~~iMTmv~k~~s-------t~~~~~~~~~avd~~T~~ll~yq~~~-~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIc 228 (673)
T KOG1461|consen 157 KDAIMTMVFKESS-------TRETTEQVVIAVDSRTSRLLHYQKCV-REKHDIQLDLSLFDSNDEVEVRNDLLDCQIDIC 228 (673)
T ss_pred ccceEEEEEeccc-------cccCCcceEEEEcCCcceEEeehhhc-ccccccccCHHHhcCCCcEEEEccCCCceeeEe
Confidence 9999999999875 46677889999999999999999832 235679999999999999999999999999999
Q ss_pred CHHHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEcccc-chhhccChhhHHHHhHhhhhcccccccCCccccCCC
Q 007078 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR 319 (619)
Q Consensus 241 sp~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~-y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~ 319 (619)
||+|+.||+|||||| +|.||++|+|..+++|++||+|.+.+. |++||.||++|+.+++|+|+||+||++|+.++.+++
T Consensus 229 S~~V~sLF~dNFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q 307 (673)
T KOG1461|consen 229 SPEVLSLFTDNFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQ 307 (673)
T ss_pred cHhHHHHhhhcccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 999999999999999 799999999999999999999999865 999999999999999999999999999999999999
Q ss_pred cceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEE
Q 007078 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIV 399 (619)
Q Consensus 320 ~~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI 399 (619)
.+.+.|.++|+++.++++++|.++.+++||.+|.||.++.|.||+||.||.||.||+|.+++||.+|+||+||.|.+|+|
T Consensus 308 ~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii 387 (673)
T KOG1461|consen 308 TFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAII 387 (673)
T ss_pred eeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCCChhhhhhhcCCCCCcccccccccccCCCCccccc
Q 007078 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSSIQGTADQSNGEMTSE 479 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (619)
|++|+|++||+|.+||+||.+|+||++.+++.+++|. .+..++++||.- + -
T Consensus 388 ~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~~---~p~~eesdee~~----~-------~--------------- 438 (673)
T KOG1461|consen 388 CDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVR---QPTTEESDEEGL----D-------D--------------- 438 (673)
T ss_pred ecCcEeCCCcccCCCcEEeeeeEeCCCcccccccccc---CCcccccchhhc----c-------c---------------
Confidence 9999999999999999999999999999999999993 345555554300 0 0
Q ss_pred cccCCCCCcCCCCCeeeeecCCCCcchhhccCCCCCCCCccccccccCchhhhhhhcccccccCCCccccCCCCCCCCCC
Q 007078 480 SSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDN 559 (619)
Q Consensus 480 ~~~~~~~~vg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 559 (619)
. ...-+|+.|.||+|.. ++.++|+|.....+..+.++...+.+.++ +++ .|.++++++.
T Consensus 439 --~-~l~siG~~G~gyi~~~-~~~~dee~~~~~~~~~~~k~n~~~~~Dd~-------~se----------~s~~~~edd~ 497 (673)
T KOG1461|consen 439 --V-KLKSIGPDGAGYIWET-EDADDEEWKPLVPPSPNDKTNEAIEDDDS-------ESE----------SSVSEEEDDA 497 (673)
T ss_pred --h-heeeccCCcceeeecc-cCcccccccccccCCcccccccccccccc-------hhh----------cccccccccc
Confidence 0 0112899999999975 33345666666555555443321111111 110 1111222222
Q ss_pred C-CCCCchhhHHHHHHHHHHHHHHcCCCCCcEEeeecccccccCCChHHhhcccCc
Q 007078 560 E-DSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGF 614 (619)
Q Consensus 560 ~-~~~~d~~~F~~e~~~~l~r~~~~~~~~d~~~lE~~~lr~a~n~~~~~v~~~~~~ 614 (619)
+ +..+|...|++||.+||+||+|||+++|+++|||||||||||++++||+++.-+
T Consensus 498 ~~~in~d~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~ 553 (673)
T KOG1461|consen 498 STDINDDTKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFM 553 (673)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHH
Confidence 2 334578899999999999999999999999999999999999999999987643
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=2.1e-48 Score=426.09 Aligned_cols=360 Identities=19% Similarity=0.276 Sum_probs=277.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCC-----
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ----- 100 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~----- 100 (619)
..|+|||||+|+|+||+|||..+|||||||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+++..|+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 81 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFG 81 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccC
Confidence 469999999999999999999999999999995 99999999999999999999999999999999986433211
Q ss_pred -CCceEEEEeCC-----CccCHHHHHHHHHhh--cc---cCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEE
Q 007078 101 -PNFTVKTIESH-----NIISAGDALRLIYEQ--NV---IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMII 169 (619)
Q Consensus 101 -~~~~I~~i~~~-----~~~~~gdalr~~~~~--~~---i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~ 169 (619)
.++.+.+..+. ..+|+|+|++..... .. +.++|||++||+++++++.++++.|+++ ++.||+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~-----~a~~ti~~ 156 (436)
T PLN02241 82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRES-----GADITIAC 156 (436)
T ss_pred CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHc-----CCCEEEEE
Confidence 12333333222 358999999865311 11 2467999999999999999999999885 58899999
Q ss_pred ecCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehhhhhcCC-ceEEEeccccceeEecCHHHH-h
Q 007078 170 KKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVL-S 246 (619)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~-~~~~~i~~~l~~~~~-~~~i~~dL~d~gI~icsp~vl-~ 246 (619)
++.... +..+|+ ++.+|. +++|++|.|||..+ ...+.++.++|..++ +++.+.+++++|||+|+|++| .
T Consensus 157 ~~v~~~---~~~~yg----vv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ 228 (436)
T PLN02241 157 LPVDES---RASDFG----LMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLK 228 (436)
T ss_pred Eecchh---hcCcce----EEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHH
Confidence 887532 345666 778864 78999999998633 346788888887655 355667899999999999999 5
Q ss_pred hhhcCcchhHHHHhhhhhhccccc-cCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeee
Q 007078 247 LFTDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLER 325 (619)
Q Consensus 247 lf~dnfd~q~~r~dfi~~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~ 325 (619)
++++.++. +.+|..+++...+ .|.++++|.++ +||.+|+++++|.+++++++... | ...+.......+.+
T Consensus 229 ll~~~~~~---~~~~~~dil~~l~~~g~~v~~~~~~-gyw~dIg~~~~y~~a~~~~l~~~--~---~~~~~~~~~~i~~~ 299 (436)
T PLN02241 229 LLRWRFPT---ANDFGSEIIPGAIKEGYNVQAYLFD-GYWEDIGTIKSFYEANLALTKQP--P---KFSFYDPDAPIYTS 299 (436)
T ss_pred HHHhhccc---ccchhHHHHHHHhhcCCeEEEEeeC-CEEEECCCHHHHHHHHHHHhcCC--c---hhhccCCCCccccc
Confidence 77766653 2366666766654 45799999997 79999999999999999998742 1 11111110000110
Q ss_pred cceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCC-------------------C
Q 007078 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN-------------------V 386 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~-------------------v 386 (619)
...+ +.+.+ .++.|.+ ++|+++|.|+ +|.|++|+||++|.||++|+|.+++|+.. +
T Consensus 300 -~~~~-~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~ 374 (436)
T PLN02241 300 -PRFL-PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPI 374 (436)
T ss_pred -CCCC-CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcce
Confidence 1111 23333 3566655 8999999999 99999999999999999999999988662 3
Q ss_pred EECCCcEEeceEECCCcEECCCCEECC
Q 007078 387 IIEDGCELRHVIVCDGVIMKAGAVLKP 413 (619)
Q Consensus 387 ~Ig~~~~I~~siIg~~v~Ig~~~~I~~ 413 (619)
+||++|.|.+++|+++|+||++|.|..
T Consensus 375 ~Ig~~~~i~~~vI~~~v~Ig~~~~i~~ 401 (436)
T PLN02241 375 GIGENTKIRNAIIDKNARIGKNVVIIN 401 (436)
T ss_pred EECCCCEEcceEecCCCEECCCcEEec
Confidence 899999999999999999999999973
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-46 Score=401.01 Aligned_cols=319 Identities=26% Similarity=0.437 Sum_probs=233.1
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
.|+|||||+|+||||+|||..+|||||||+|+|||+|+|++|+++||++|+|.++++.+++++|+++..+ .++.|.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~---~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG---LGVRITY 77 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc---cCCceEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999998532 2578999
Q ss_pred EeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCC
Q 007078 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~ 186 (619)
+.+.+++|||++|+.+. .++. ++|++++||++++.+|..++++|+++ .+.+|++...... ..++|
T Consensus 78 ~~e~~~lGTag~l~~a~--~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~-----~~~~~~~~~~~~~-----~~~~G-- 143 (358)
T COG1208 78 VVEKEPLGTAGALKNAL--DLLGGDDFLVLNGDVLTDLDLSELLEFHKKK-----GALATIALTRVLD-----PSEFG-- 143 (358)
T ss_pred EecCCcCccHHHHHHHH--HhcCCCcEEEEECCeeeccCHHHHHHHHHhc-----cCccEEEEEecCC-----CCcCc--
Confidence 99999999999999654 5565 67999999999999999999999986 3777887777642 24666
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc--CcchhHHHHhhhhh
Q 007078 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRRHFVKG 264 (619)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d--nfd~q~~r~dfi~~ 264 (619)
++..+..++++..|.+||.. .. ..++++.+|+|+|+|++++++.. .+++. .++++.
T Consensus 144 --vv~~~~~~~~v~~f~ekp~~-~~----------------~~~~~in~Giyi~~~~v~~~i~~~~~~~~~---~~~~~~ 201 (358)
T COG1208 144 --VVETDDGDGRVVEFREKPGP-EE----------------PPSNLINAGIYIFDPEVFDYIEKGERFDFE---EELLPA 201 (358)
T ss_pred --eEEecCCCceEEEEEecCCC-CC----------------CCCceEEeEEEEECHHHhhhcccCCcccch---hhHHHH
Confidence 77777545799999999842 10 12578899999999999996653 23332 245555
Q ss_pred hccccccCceEEEEEccccchhhccChhhHHHHhHhhhhccc-ccccCCccccCCCcceeeecceEEcCCcEECCCCEEc
Q 007078 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT-YPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVG 343 (619)
Q Consensus 265 vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~-~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~I~ 343 (619)
++.. +..++++... +||.+|+++++|..++..++.++. ++..+..... . . +.. +.|.
T Consensus 202 l~~~---~~~v~~~~~~-g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~----~--------~-----~~~-~~i~ 259 (358)
T COG1208 202 LAAK---GEDVYGYVFE-GYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPV----V--------I-----IRS-AYII 259 (358)
T ss_pred HHhC---CCcEEEEEeC-CeEEeCCCHHHHHHHHHHHHhcccccccccccccc----c--------c-----ccc-ceEe
Confidence 5443 3369999987 699999999999999999987432 2211111000 0 0 222 3444
Q ss_pred CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007078 344 SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA 407 (619)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~ 407 (619)
++++||.+|.|++++.|+ +++||++|.||.++.|.+|+|++++.|++++.|.+|+|+.+|.||+
T Consensus 260 gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 444444444444444443 3555555555555555555555555555555555555555555555
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.3e-46 Score=409.06 Aligned_cols=379 Identities=20% Similarity=0.277 Sum_probs=286.6
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCC--CC-c
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ--PN-F 103 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~--~~-~ 103 (619)
.++|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+.+..|... .+ +
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~ 82 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFV 82 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEE
Confidence 68999999999999999999999999999999 99999999999999999999999999999999986322211 12 2
Q ss_pred eEEEEeCC----C-ccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCC
Q 007078 104 TVKTIESH----N-IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKP 174 (619)
Q Consensus 104 ~I~~i~~~----~-~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~ 174 (619)
.+.+..+. . .+|+|+|++.. +.++. ++|||++||+++++++.++++.|++. ++.+||++++...
T Consensus 83 ~i~~~~~~~~~~~~~lGTa~al~~a--~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~~~~ 155 (429)
T PRK02862 83 EVLAAQQTPENPSWFQGTADAVRKY--LWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRET-----GADITLAVLPVDE 155 (429)
T ss_pred EEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHc-----CCCEEEEEEecCh
Confidence 22222221 1 27999999965 34443 45999999999999999999999774 4778888876543
Q ss_pred CCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehhhhhcCC-ceEEEeccccceeEecCHHHHh-hhhcC
Q 007078 175 SPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS-LFTDN 251 (619)
Q Consensus 175 ~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~-~~~~~i~~~l~~~~~-~~~i~~dL~d~gI~icsp~vl~-lf~dn 251 (619)
. ...+|+ ++.+|+ +++++.|.|||... ...+.++.++|..++ ....+..++++|+|+|++++|. ++.+.
T Consensus 156 ~---~~~~yG----~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~ 227 (429)
T PRK02862 156 K---DASGFG----LMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN 227 (429)
T ss_pred h---hcccce----EEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC
Confidence 2 345666 788874 68999999998632 345777888776654 3444567889999999999995 66664
Q ss_pred cchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEc
Q 007078 252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRA 331 (619)
Q Consensus 252 fd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~ 331 (619)
+.+.+...|+++.+ +.+.++++|.++ +||.+|+++++|.+++++++.. ..|...+.......+.+ ....
T Consensus 228 ~~~~~~~~dil~~l----~~~~~v~~~~~~-g~w~digt~~~y~~an~~l~~~----~~~~~~~~~~~~~i~~~--~~~~ 296 (429)
T PRK02862 228 PEYTDFGKEIIPEA----IRDYKVQSYLFD-GYWEDIGTIEAFYEANLALTQQ----PNPPFSFYDEKAPIYTR--ARYL 296 (429)
T ss_pred CChhhhHHHHHHHH----hccCcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcC----CCCcccccCCCCceecc--CCCC
Confidence 43333344555544 457789999886 8999999999999999997722 22322111111111111 1122
Q ss_pred CCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC-------------------CCEECCCc
Q 007078 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD-------------------NVIIEDGC 392 (619)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~-------------------~v~Ig~~~ 392 (619)
+.+.+ .++.|. ++.||++|.| +++.|++|+||++|.||++|+|.+|+|+. ++.||++|
T Consensus 297 ~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~ 373 (429)
T PRK02862 297 PPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGT 373 (429)
T ss_pred CCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCC
Confidence 23333 256663 6899999999 89999999999999999999999999986 69999999
Q ss_pred EEeceEECCCcEECCCCEECC------------CCEECCC-cEECCCCEECCCCEE
Q 007078 393 ELRHVIVCDGVIMKAGAVLKP------------GVVLSFK-VVIGERFVVPAHSKV 435 (619)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~------------g~vIg~~-v~Ig~~~~i~~~~~v 435 (619)
.|.+++|+.+|.||++|+|.. |++|++| |+|+.+++++++++|
T Consensus 374 ~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 374 TIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred EEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 999999999999999999953 5667776 667777777776653
No 5
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-46 Score=381.69 Aligned_cols=373 Identities=25% Similarity=0.391 Sum_probs=285.3
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHccCCCCCCCce
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~ 104 (619)
-..|||||+|+|.|+||--++...|||||||+|+|||+|+|.+|.++|+++|+|++.. ....|+..+.+..-......-
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~ 86 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDY 86 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccE
Confidence 3469999999999999999999999999999999999999999999999999999986 356788888664221111112
Q ss_pred EEEEeC--CCccCHHHHHHHHHhhcccCC-CEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCC-CCcC
Q 007078 105 VKTIES--HNIISAGDALRLIYEQNVIHG-DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP-ITHQ 180 (619)
Q Consensus 105 I~~i~~--~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~-~~~~ 180 (619)
+. +.. ....|++|+||.+. ..|+. |||+++||.|+++++..+++++|.. |+..+|++. -.....+ .+.+
T Consensus 87 v~-ip~~~~~d~gtadsLr~Iy--~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~---d~slamli~-~~~s~~~~pgqk 159 (433)
T KOG1462|consen 87 VE-IPTDDNSDFGTADSLRYIY--SKIKSEDFLVLSCDFVTDVPLQPLVDKFRAT---DASLAMLIG-NALSEVPIPGQK 159 (433)
T ss_pred EE-eecccccccCCHHHHhhhh--hhhccCCEEEEecccccCCCcHHHHHHHhcc---ChhHhHHhc-cccccccccCcc
Confidence 22 222 33679999999875 44776 9999999999999999999999964 455666554 2111111 1133
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHh
Q 007078 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH 260 (619)
Q Consensus 181 ~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~d 260 (619)
.+......++.+++.|.|+++.... ...+..+.|...+++.||.+.+.++|.|+|||.|+.+|+++|+++-...+.|.+
T Consensus 160 ~k~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 160 GKKKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKAD 238 (433)
T ss_pred cccccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccc
Confidence 3333455689999999997665554 234567899999999999999999999999999999999999987666666778
Q ss_pred hhhhhccccc----------------------c-------CceEEEEEcccc-chhhccChhhHHHHhHhhhhccccccc
Q 007078 261 FVKGLLLDDI----------------------M-------GYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYV 310 (619)
Q Consensus 261 fi~~vL~~~~----------------------~-------g~~I~~~~~~~~-y~~~V~~~~sY~~~~~dil~r~~~p~~ 310 (619)
|++.++.... . .-++|+|.++.+ ...|++|+-+|.++|++-+ | --+.
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~--~-~~l~ 315 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKK--L-KKLC 315 (433)
T ss_pred ccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHH--H-HHhc
Confidence 8877764311 1 257888888654 5679999999999997422 1 1233
Q ss_pred CCccccCCCcceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECC
Q 007078 311 PDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIED 390 (619)
Q Consensus 311 p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~ 390 (619)
|+..+..+. ....+.++..+++|++|.|++++.|..|+||.+|.||+.|+|.+|.|++||+||+
T Consensus 316 ~e~~~~k~~----------------~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~ 379 (433)
T KOG1462|consen 316 SEAKFVKNY----------------VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGD 379 (433)
T ss_pred cccccccch----------------hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecC
Confidence 443222210 1112556678889999999999999999999999999999999999999999999
Q ss_pred CcEEeceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007078 391 GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (619)
Q Consensus 391 ~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (619)
||.|++||||.++.||+|+.+. +|.||.+=+|.+.
T Consensus 380 G~~IensIIg~gA~Ig~gs~L~-nC~Ig~~yvVeak 414 (433)
T KOG1462|consen 380 GVNIENSIIGMGAQIGSGSKLK-NCIIGPGYVVEAK 414 (433)
T ss_pred CcceecceecccceecCCCeee-eeEecCCcEEccc
Confidence 9999999999999999999998 4555555444433
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.1e-44 Score=388.59 Aligned_cols=358 Identities=18% Similarity=0.230 Sum_probs=264.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHcc-CCCCC---C
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ---P 101 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~---~ 101 (619)
+.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+++. +|... .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRING 81 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence 469999999999999999999999999999999 999999999999999999999999999999999753 45421 1
Q ss_pred CceEE--EEeCCC---ccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007078 102 NFTVK--TIESHN---IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (619)
Q Consensus 102 ~~~I~--~i~~~~---~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~ 172 (619)
++.+. ++.+.+ .+|+++|++.. +.++. ++|||++||++++.++.++++.|+++ ++.+|+++...
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~~a--~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~-----~~~~tl~~~~~ 154 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIYQN--IDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK-----EADVTIAVIEV 154 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCCEEEEEEEc
Confidence 24443 333333 47999999854 34453 34999999999999999999999874 35677776654
Q ss_pred CCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh-hhhcC
Q 007078 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN 251 (619)
Q Consensus 173 ~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~-lf~dn 251 (619)
... +..+|| ++.+|. .++|..+.|||... ..++..+|+|+++++++. ++.+.
T Consensus 155 ~~~---~~~~yG----~v~~d~-~g~V~~~~eKp~~~-------------------~~~~~~~Giyi~~~~~l~~~l~~~ 207 (380)
T PRK05293 155 PWE---EASRFG----IMNTDE-NMRIVEFEEKPKNP-------------------KSNLASMGIYIFNWKRLKEYLIED 207 (380)
T ss_pred chh---hccccC----EEEECC-CCcEEEEEeCCCCC-------------------CcceeeeEEEEEcHHHHHHHHHHH
Confidence 322 445777 777874 58999999997521 134678999999999885 44321
Q ss_pred cchhHHHHhhhhhhccccc-cCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEE
Q 007078 252 FDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYR 330 (619)
Q Consensus 252 fd~q~~r~dfi~~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~ 330 (619)
......+.+|..++++..+ .|.++++|.+. +||.+++++++|..++++++.+-.. ...+... ...+ ....+
T Consensus 208 ~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~----~~~~~~~-~~~~--~~~~~ 279 (380)
T PRK05293 208 EKNPNSSHDFGKNVIPLYLEEGEKLYAYPFK-GYWKDVGTIESLWEANMELLRPENP----LNLFDRN-WRIY--SVNPN 279 (380)
T ss_pred hhcCCchhhhHHHHHHHHhhcCCeEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCch----hhhcCCC-Ccee--cCCcC
Confidence 1000012244444544433 46789999987 7999999999999999998865311 0011110 0000 11123
Q ss_pred cCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007078 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (619)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (619)
...+.|++++.| .++.||++|.|+ ..+.+|+||++|.||++|+|.+|+|++++.|+++|.|.+|+|++++.|+.++.
T Consensus 280 ~~~~~i~~~~~i-~~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 280 LPPQYIAENAKV-KNSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred CCCCEECCCCEE-ecCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 344556666666 467788888885 35779999999999999999999999999999999999999999999999999
Q ss_pred ECCC----CEECCCcEECCCCEE
Q 007078 411 LKPG----VVLSFKVVIGERFVV 429 (619)
Q Consensus 411 I~~g----~vIg~~v~Ig~~~~i 429 (619)
|.++ .+||+++.|+++++|
T Consensus 357 i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 357 IGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred EcCCCceeEEEeCCCCCCCCcEe
Confidence 9876 556666655555544
No 7
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.2e-44 Score=361.24 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=268.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.|+|+||.+|+|||++|||...||||+|++|+|||++.+++|..+||++|++.+++..+++..|+.+.. ....|++|.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-GKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh-hhccceEEE
Confidence 6799999999999999999999999999999999999999999999999999999999887777765532 222356777
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCC--CEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHG--DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~--dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
+..+.+++++.+-+..+...-.... +|++++||+++.+++.+++++|+++ ++..|+++.+.. ..++||
T Consensus 87 ~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~-----gae~TI~~t~vd-----epSkyG 156 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAH-----GAEITIVVTKVD-----EPSKYG 156 (371)
T ss_pred EEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhc-----CCceEEEEEecc-----Cccccc
Confidence 7777667654444432211122223 5999999999999999999999997 588999998876 457899
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhh
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~ 264 (619)
++.+|..++||.+|.|||.. +..+-++.|||+++|+||..+. -+.- + |-+.
T Consensus 157 ----vv~~d~~~grV~~F~EKPkd-------------------~vsnkinaGiYi~~~~vL~ri~-~~pt-S----iekE 207 (371)
T KOG1322|consen 157 ----VVVIDEDTGRVIRFVEKPKD-------------------LVSNKINAGIYILNPEVLDRIL-LRPT-S----IEKE 207 (371)
T ss_pred ----eEEEecCCCceeEehhCchh-------------------hhhccccceEEEECHHHHhHhh-hccc-c----hhhh
Confidence 99999889999999999862 1234567999999999998765 2211 1 2334
Q ss_pred hccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCcEECCCCEEcC
Q 007078 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGS 344 (619)
Q Consensus 265 vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~I~~ 344 (619)
++...+.+.++|+|.++ +||.+|+++++|..+..-+++.... ..|. ++.+++.|.+
T Consensus 208 ifP~~a~~~~l~a~~l~-gfWmDIGqpkdf~~g~~~Yl~s~~~-~t~~----------------------r~~p~~~i~~ 263 (371)
T KOG1322|consen 208 IFPAMAEEHQLYAFDLP-GFWMDIGQPKDFLTGFSFYLRSLPK-YTSP----------------------RLLPGSKIVG 263 (371)
T ss_pred hhhhhhhcCceEEEecC-chhhhcCCHHHHHHHHHHHHhhCcc-cCCc----------------------cccCCccccc
Confidence 44445578899999998 9999999999999986655542110 0111 1222344445
Q ss_pred CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEE
Q 007078 345 FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVI 423 (619)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~I 423 (619)
++.+.+-..+|.+|.|+ +++||.+|+|+.+++|.+|.|..++.++.++.|..+++|.++.||.+++|...|+||++|+|
T Consensus 264 nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V 343 (371)
T KOG1322|consen 264 NVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIV 343 (371)
T ss_pred cEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEE
Confidence 55555555555666665 37889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCEECCCCEEcC
Q 007078 424 GERFVVPAHSKVSL 437 (619)
Q Consensus 424 g~~~~i~~~~~v~~ 437 (619)
.+--.+..+....+
T Consensus 344 ~d~~~vn~g~~l~~ 357 (371)
T KOG1322|consen 344 ADEDYVNEGSGLPI 357 (371)
T ss_pred ecccccccceeEEe
Confidence 77666665544443
No 8
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=352.71 Aligned_cols=333 Identities=19% Similarity=0.327 Sum_probs=275.0
Q ss_pred CCeEEEEEeCC--CCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCChHHHHHHHHccCCCCCCCc
Q 007078 27 QPLQAILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNF 103 (619)
Q Consensus 27 ~~lqAVILA~g--~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~ 103 (619)
+.++||||.+| +||||+||+.+.||||+||+|+|||+|-|+.|++. |+.+|+++.-+..+.+.+|+....... ++
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~--~~ 78 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEF--KV 78 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhc--cc
Confidence 46899999998 79999999999999999999999999999999995 999999999988888899987643221 35
Q ss_pred eEEEEeCCCccCHHHHHHHHHhhcccCC---CEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcC
Q 007078 104 TVKTIESHNIISAGDALRLIYEQNVIHG---DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (619)
Q Consensus 104 ~I~~i~~~~~~~~gdalr~~~~~~~i~~---dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (619)
.|.|+.+.+++|+|+.|..... .++.+ .|.|+++|+.++++|+++++.|+.. +.++||+..+.+.. ..
T Consensus 79 pvrYL~E~~plGtaGgLyhFrd-qIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~-----g~~~tll~tkvs~e---~a 149 (407)
T KOG1460|consen 79 PVRYLREDNPLGTAGGLYHFRD-QILAGSPSAVFVLNADVCCSFPLQDMLEAHRRY-----GGIGTLLVTKVSRE---QA 149 (407)
T ss_pred chhhhccCCCCCcccceeehhh-HHhcCCCceEEEEecceecCCcHHHHHHHHhhc-----CCceEEEEEEecHh---Hh
Confidence 6889999999999999886543 33443 3999999999999999999999764 58999999998765 55
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcch------
Q 007078 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY------ 254 (619)
Q Consensus 181 ~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~------ 254 (619)
..+| .++-||.|++|+||.+||.. +-+|.++||||+++|+++..+.+-|..
T Consensus 150 snfG----~lV~dP~t~evlHYveKPsT-------------------fvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~ 206 (407)
T KOG1460|consen 150 SNFG----CLVEDPSTGEVLHYVEKPST-------------------FVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE 206 (407)
T ss_pred hccC----eeeecCCcCceEEeecCcch-------------------hhhcccceeEEEecHHHHHHHHHHHHHHHhhhh
Confidence 6677 78889999999999999862 247899999999999999887764321
Q ss_pred --------hHHHHhhh---hhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcc--cccccCCccccCCCcc
Q 007078 255 --------QHLRRHFV---KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW--TYPYVPDVKFCGNRAT 321 (619)
Q Consensus 255 --------q~~r~dfi---~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~--~~p~~p~~~~~~~~~~ 321 (619)
+..-.||+ .++|....-.+++|+|..+ ++|..+.+..+-..+++-+|+++ ++|- ..-.+.-.-
T Consensus 207 ~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~-~fW~QiKtagsal~as~lYLs~yk~t~p~---~Lak~pgt~ 282 (407)
T KOG1460|consen 207 VEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETT-DFWSQIKTAGSALYASRLYLSQYKRTHPA---RLAKGPGTQ 282 (407)
T ss_pred hhhcccccCCCccceEEeechhhhhhcCCCceEEEecc-cHHHHhccccceeehhhhHHHHHhhcCch---hhcCCCCCC
Confidence 11112343 2455555667899999987 89999999999999999999854 4433 211111122
Q ss_pred eeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEece
Q 007078 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV 397 (619)
Q Consensus 322 ~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s 397 (619)
....+++||+++++++++++||+|+.||.+++||+|++++.|+|-++|.|.+|+.+.+|+|+..+.||..++++..
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999753
No 9
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.7e-43 Score=380.26 Aligned_cols=346 Identities=17% Similarity=0.237 Sum_probs=254.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCce
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~ 104 (619)
..+|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.. .|... ++.
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~-~~~ 80 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQ-TWRLS-GLL 80 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHh-CcCcc-ccC
Confidence 4569999999999999999999999999999998 99999999999999999999999999999999974 46422 122
Q ss_pred EEEE---eCC------CccCHHHHHHHHHhhcccCC---C-EEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEec
Q 007078 105 VKTI---ESH------NIISAGDALRLIYEQNVIHG---D-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (619)
Q Consensus 105 I~~i---~~~------~~~~~gdalr~~~~~~~i~~---d-fLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~ 171 (619)
+.++ .+. ..+|+|+|++.. +.++.+ + |||++||++++.+|.+++++|+++ ++.+|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~lGta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~-----~~~~ti~~~~ 153 (407)
T PRK00844 81 GNYITPVPAQQRLGKRWYLGSADAIYQS--LNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIES-----GAGVTVAAIR 153 (407)
T ss_pred CCeEEECCcccCCCCCcccCCHHHHHHH--HHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCcEEEEEEe
Confidence 2222 111 158999999854 444532 3 899999999999999999999875 4778888876
Q ss_pred CCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhc
Q 007078 172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTD 250 (619)
Q Consensus 172 ~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~d 250 (619)
.... ...+|+ ++.+|+ +++|..|.+||...... +. .-...++.+|+|++++++| .++..
T Consensus 154 ~~~~---~~~~~G----vv~~d~-~g~v~~~~eKp~~~~~~-------~~-----~~~~~~~~~Giyi~~~~~l~~~l~~ 213 (407)
T PRK00844 154 VPRE---EASAFG----VIEVDP-DGRIRGFLEKPADPPGL-------PD-----DPDEALASMGNYVFTTDALVDALRR 213 (407)
T ss_pred cchH---HcccCC----EEEECC-CCCEEEEEECCCCcccc-------cC-----CCCCcEEEeEEEEEeHHHHHHHHHH
Confidence 4322 345677 788885 68999999998632110 00 0124678899999999996 65653
Q ss_pred Cc----chhHHHHhhhhhhccccccCceEEEEEcc-----------ccchhhccChhhHHHHhHhhhhcccccccCCccc
Q 007078 251 NF----DYQHLRRHFVKGLLLDDIMGYKIFTHEIH-----------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKF 315 (619)
Q Consensus 251 nf----d~q~~r~dfi~~vL~~~~~g~~I~~~~~~-----------~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~ 315 (619)
.. ...++..|+++.++. ..++++|.+. .+||.+|+++++|.+++++++.+... . ..+
T Consensus 214 ~~~~~~~~~~~~~dii~~l~~----~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~-~---~~~ 285 (407)
T PRK00844 214 DAADEDSSHDMGGDIIPRLVE----RGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-F---NLY 285 (407)
T ss_pred hhcCCcccccchhhHHHHHhc----cCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCc-c---ccC
Confidence 11 111122355555443 3478888652 48999999999999999999975211 0 001
Q ss_pred cCCC-cce---eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCC
Q 007078 316 CGNR-ATK---LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391 (619)
Q Consensus 316 ~~~~-~~~---~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~ 391 (619)
.... .+. ...+..|++..+. ..+.+++.||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|+|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~ 360 (407)
T PRK00844 286 NREWPIYTSSPNLPPAKFVDGGGR----VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRG 360 (407)
T ss_pred CCCCcccccCCCCCCceEecCCCc----cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCC
Confidence 0000 000 0112223222111 1234678999999998 89999999999999999999999999999999999
Q ss_pred cEEeceEECCCcEECCCCEECC
Q 007078 392 CELRHVIVCDGVIMKAGAVLKP 413 (619)
Q Consensus 392 ~~I~~siIg~~v~Ig~~~~I~~ 413 (619)
|+|.+|+|+++++|+++++|+.
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEEeeEECCCCEECCCCEECC
Confidence 9999999999999999988875
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=6e-43 Score=375.77 Aligned_cols=337 Identities=20% Similarity=0.348 Sum_probs=213.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChH-HHHHHHHcc-CCCCC---C
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSK-QVIDYLENS-EWFSQ---P 101 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~-~i~~~l~~~-~~~~~---~ 101 (619)
.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+ +|++|+.+. .|... .
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 58999999999999999999999999999999 999999999999999999999999877 999999763 45322 1
Q ss_pred CceEEEEeCCCccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007078 102 NFTVKTIESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (619)
Q Consensus 102 ~~~I~~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~ 177 (619)
++.+.+......+|+|++.....++.+++ ++|||++||++++++|.+++++|+++ ++.+|+++.+....
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~v~~~-- 154 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEET-----GKDITVVYKKVKPA-- 154 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHc-----CCCEEEEEEecCHH--
Confidence 11223333344555566533334455553 45999999999999999999999875 57899998775421
Q ss_pred CcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchhH
Q 007078 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQH 256 (619)
Q Consensus 178 ~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q~ 256 (619)
...+++ .++.++. ++++..+.+++.+.. ..++.+|||+++|+++ .++.+.+...
T Consensus 155 -~~~~~g---~vv~~~~-~g~v~~~~~~~~~~~-------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~- 209 (369)
T TIGR02092 155 -DASEYD---TILRFDE-SGKVKSIGQNLNPEE-------------------EENISLDIYIVSTDLLIELLYECIQRG- 209 (369)
T ss_pred -HccccC---cEEEEcC-CCCEEeccccCCCCC-------------------cceeeeeEEEEEHHHHHHHHHHHhhcC-
Confidence 233454 2455653 567776654332110 1234689999999976 4554322111
Q ss_pred HHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEE----cC
Q 007078 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYR----AL 332 (619)
Q Consensus 257 ~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~----~~ 332 (619)
..+++.+++...+.+.++++|..+ +||.+|+++++|..++++++++|.++... ... ...+|. ..
T Consensus 210 -~~~~~~d~i~~~~~~~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~----~~~------~~~~~~~~~~~~ 277 (369)
T TIGR02092 210 -KLTSLEELIRENLKELNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF----YSS------QGPIYTKVKDEP 277 (369)
T ss_pred -ccccHHHHHHHHhccCcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc----CCC------CCceeeccCCCC
Confidence 112333444443345689999887 89999999999999999999998764211 000 011111 12
Q ss_pred CcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007078 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (619)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I 411 (619)
.+.|+++|.| ++++||++|.|+ +.|.+|+||++|.|+++|+|.+|+|++++.|+.++.+.+|+||++++|+++++|
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence 2233333333 334444444443 234444444444444444444444444444444444444444444444444444
No 11
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-42 Score=377.00 Aligned_cols=350 Identities=17% Similarity=0.231 Sum_probs=255.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCee-hHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCC---CC
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVP-MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PN 102 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~P-lI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~---~~ 102 (619)
..++|||||+|+||||+|||..+||||+||+|+| ||+|+|++|.++|+++|+|+++++.+++.+|+++ .|... .+
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQR-GWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHh-hhcccccCCC
Confidence 5589999999999999999999999999999997 9999999999999999999999999999999976 35321 11
Q ss_pred ceEEEEe-------CCCccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEec
Q 007078 103 FTVKTIE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (619)
Q Consensus 103 ~~I~~i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~ 171 (619)
..+.++. ++..+|+|+|++.. +.++. ++|||++||++++.+|.++++.|+++ ++.+|+++.+
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a--~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~-----~~~~tl~~~~ 165 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVYQN--LDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVES-----GADCTVACLE 165 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHc-----CCCEEEEEEe
Confidence 1222221 12358999999854 34453 34999999999999999999999875 4778888766
Q ss_pred CCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhc
Q 007078 172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTD 250 (619)
Q Consensus 172 ~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~d 250 (619)
.... ...+|| ++.+|+ .++|..|.|||..... + ... -...++++|||+|++++| .++.+
T Consensus 166 ~~~~---~~~~yG----~v~~d~-~~~V~~~~EKp~~~~~---~-----~~~----~~~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 166 VPRE---EASAFG----VMAVDE-NDRITAFVEKPANPPA---M-----PGD----PDKSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred cchh---hcccce----EEEECC-CCCEEEEEECCCCccc---c-----ccC----ccceEEEeeEEEEeHHHHHHHHHH
Confidence 5322 345777 788885 5899999999853211 0 000 114578999999999987 45542
Q ss_pred -CcchhHHHHhhhhhhccccccCceEEEEEccc----------cchhhccChhhHHHHhHhhhhcccccccCCccccCCC
Q 007078 251 -NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHS----------SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR 319 (619)
Q Consensus 251 -nfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~----------~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~ 319 (619)
.++.+. ..+|..+++...+...++++|.+++ +||.+|+++++|.+++++++... |...+....
T Consensus 226 ~~~~~~~-~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-----~~~~~~~~~ 299 (425)
T PRK00725 226 DAEDPNS-SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-----PELDLYDRN 299 (425)
T ss_pred hhcCCCc-cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-----chhhccCCC
Confidence 111111 1234444554444456899998853 69999999999999999998643 111111110
Q ss_pred --cce---eeecceEEc--CCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCc
Q 007078 320 --ATK---LERRGMYRA--LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (619)
Q Consensus 320 --~~~---~~~~~i~~~--~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (619)
-++ ...+..|+. .++ .+.+ .+++||.+|.| ++|.|++|+||++|.||++|+|.+|+|+++|.||++|
T Consensus 300 ~~i~t~~~~~~~~~~~~~~~~~----~~~~-~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~ 373 (425)
T PRK00725 300 WPIWTYQEQLPPAKFVFDRSGR----RGMA-INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSC 373 (425)
T ss_pred CccccCCCCCCCCeEeccCCCC----cceE-EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCC
Confidence 000 111122221 111 1222 47899999999 7899999999999999999999999999999999999
Q ss_pred EEeceEECCCcEECCCCEECCCCE
Q 007078 393 ELRHVIVCDGVIMKAGAVLKPGVV 416 (619)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~v 416 (619)
+|.+|+|++++.|+++++|+.++.
T Consensus 374 ~i~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 374 RLRRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred EEeeEEECCCCEECCCCEECCCCC
Confidence 999999999999998888886654
No 12
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=350.23 Aligned_cols=345 Identities=21% Similarity=0.322 Sum_probs=268.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCC-eehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-CCCC---C
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQ---P 101 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~---~ 101 (619)
..+-|+|||+|.|+|+.|||..++||-+|++| ..|||++|.+|.++|+..|+|++++....+.+||..+. |... .
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~ 83 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNG 83 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccC
Confidence 35779999999999999999999999999999 89999999999999999999999999999999998863 5222 2
Q ss_pred CceEEEEe---CC--CccCHHHHHHHHHhhcccC---CC-EEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007078 102 NFTVKTIE---SH--NIISAGDALRLIYEQNVIH---GD-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (619)
Q Consensus 102 ~~~I~~i~---~~--~~~~~gdalr~~~~~~~i~---~d-fLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~ 172 (619)
++.+..-. .. -..|+++|+++ +..++. .+ +|+++||+|+++|++++|+.|+++ +|.+|+++++.
T Consensus 84 ~v~ilp~~~~~~~~~wy~Gtadai~Q--nl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~-----gadiTv~~~~V 156 (393)
T COG0448 84 GVFILPAQQREGGERWYEGTADAIYQ--NLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIES-----GADVTVAVKEV 156 (393)
T ss_pred cEEEeCchhccCCCcceeccHHHHHH--hHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEEEC
Confidence 33333221 11 22478888874 333343 23 899999999999999999999996 69999999999
Q ss_pred CCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh-hhhcC
Q 007078 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN 251 (619)
Q Consensus 173 ~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~-lf~dn 251 (619)
+.. ..+++| ++.+|+ +++|..|.|||.... + .+.|...||||+..++|. ++.+.
T Consensus 157 p~~---eas~fG----im~~D~-~~~i~~F~eKp~~~~-------------~----~~~laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 157 PRE---EASRFG----VMNVDE-NGRIIEFVEKPADGP-------------P----SNSLASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred ChH---hhhhcC----ceEECC-CCCEEeeeeccCcCC-------------c----ccceeeeeeEEEcHHHHHHHHHHH
Confidence 866 678888 899985 899999999997310 0 122778999999999985 55543
Q ss_pred cchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEc
Q 007078 252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRA 331 (619)
Q Consensus 252 fd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~ 331 (619)
-.-.....||.++++...+..+++++|.++ +||.+|+|.++|+++++|++.. .|+.++...+...+.+.. ..
T Consensus 212 ~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~-gYw~dVgTi~syy~aNmdLl~~-----~~~~~lyd~~w~IyT~~~--~~ 283 (393)
T COG0448 212 AKDPNSSHDFGKDIIPKLLERGKVYAYEFS-GYWRDVGTIDSYYEANMDLLSP-----QPELNLYDRNWPIYTKNK--NL 283 (393)
T ss_pred hcccCccccchHHHHHHHHhcCCEEEEecc-chhhhcccHHHHHHhhHHhcCC-----CCcccccCCCCceeecCC--CC
Confidence 221122368888888776555569999998 8999999999999999999872 122222222111111111 11
Q ss_pred CCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007078 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (619)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I 411 (619)
+-+.+..++.+ .++.|+.||.|.. .|.+|+|+++++|+.+|+|.+|+|+++|.||.||+|.++||..+|.|++|+.|
T Consensus 284 pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i 360 (393)
T COG0448 284 PPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI 360 (393)
T ss_pred CCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence 23444445554 6889999999964 89999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007078 412 KPG 414 (619)
Q Consensus 412 ~~g 414 (619)
+..
T Consensus 361 ~~~ 363 (393)
T COG0448 361 GGD 363 (393)
T ss_pred cCC
Confidence 865
No 13
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=9.5e-41 Score=357.65 Aligned_cols=344 Identities=20% Similarity=0.239 Sum_probs=229.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCC--CceEEE
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQP--NFTVKT 107 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~--~~~I~~ 107 (619)
|||||+|+|+||+|||..+|||||||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+ .|.... ...+.+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQR-GWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHh-ccCccCccCCCEEE
Confidence 69999999999999999999999999999 89999999999999999999999999999999985 453211 112333
Q ss_pred Ee-------CCCccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007078 108 IE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (619)
Q Consensus 108 i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~ 176 (619)
+. ++..+|++++++... .++. ++|+|++||++++.++.++++.|+++ ++.+|+++.+....
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~--~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~-----~~~~ti~~~~~~~~- 151 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNL--DLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIES-----GADVTIACIPVPRK- 151 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHH--HHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHc-----CCCEEEEEEecChH-
Confidence 21 122479999998543 3332 34999999999999999999999764 46677777654211
Q ss_pred CCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcC-cch
Q 007078 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN-FDY 254 (619)
Q Consensus 177 ~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dn-fd~ 254 (619)
...+|+ ++.+|. .++|..|.+||..+...... + ...+.++|||+++|+++ .++... ...
T Consensus 152 --~~~~~g----~v~~d~-~~~v~~~~ekp~~~~~~~~~-~-----------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 212 (361)
T TIGR02091 152 --EASRFG----VMQVDE-DGRIVDFEEKPANPPSIPGM-P-----------DFALASMGIYIFDKDVLKELLEEDADDP 212 (361)
T ss_pred --hccccc----EEEECC-CCCEEEEEECCCCccccccc-c-----------cccEEeeeEEEEcHHHHHHHHHHHhhcC
Confidence 334565 778874 67899999987422111000 0 12478999999999997 454431 111
Q ss_pred hHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCc
Q 007078 255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEI 334 (619)
Q Consensus 255 q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~ 334 (619)
+. ..+|..++++..+..+++++|.++ +||.+|+++++|..++++++.++.... .+.. ..... ....++.+.+
T Consensus 213 ~~-~~~~~~d~l~~l~~~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~~----~~~~-~~~~~-~~~~~~~~~~ 284 (361)
T TIGR02091 213 ES-SHDFGKDIIPRALEEGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPFD----LYDR-KWPIY-TYNEFLPPAK 284 (361)
T ss_pred Cc-ccccHHHHHHHHhhcCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchhh----cccc-CCcee-cCCCCCCCce
Confidence 11 123334445444455699999987 899999999999999999998752210 0100 00000 1112333444
Q ss_pred EECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007078 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (619)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (619)
.+++++.| +++.||++|.|+++ .|.+|+||++|.||++|+|.+|+|++++.||.+|+|.+|+||+++.|+.++.|+
T Consensus 285 ~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 285 FVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 44444444 44566666666654 556666666666666666666666666666666666655555555555555443
No 14
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=7.7e-40 Score=349.60 Aligned_cols=344 Identities=17% Similarity=0.241 Sum_probs=252.7
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHcc-CCCCCCCceEEE
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTVKT 107 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~I~~ 107 (619)
+|||||+|.|+||+|+|..+||||+|++|+|||+|+|++|.++|+++|+|++++ +.+++.+|+.+. .| ++++.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~----~~~~~~ 76 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERF----GAKITY 76 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccccc----CceEEE
Confidence 689999999999999999999999999999999999999999999999999999 899999999763 34 356777
Q ss_pred EeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCC
Q 007078 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~ 186 (619)
+.+....|++++++.. +.++. ++||+++||++++.++.++++.|+++ ++.+|+++.+.. ...+++
T Consensus 77 ~~~~~~~G~~~al~~a--~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g-- 142 (353)
T TIGR01208 77 IVQGEPLGLAHAVYTA--RDFLGDDDFVVYLGDNLIQDGISRFVKSFEEK-----DYDALILLTKVR-----DPTAFG-- 142 (353)
T ss_pred EECCCCCCHHHHHHHH--HHhcCCCCEEEEECCeecCccHHHHHHHHHhc-----CCCcEEEEEECC-----ChhhCe--
Confidence 7777788999999964 44454 46999999999999999999999875 467788877643 233555
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhhc
Q 007078 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLL 266 (619)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL 266 (619)
++.++ +.++|..+.++|... .+++..+|+|++++.+++++.+-..... ...++.+++
T Consensus 143 --~~~~~-~~~~v~~~~ekp~~~-------------------~~~~~~~Giy~~~~~l~~~l~~~~~~~~-~e~~l~d~l 199 (353)
T TIGR01208 143 --VAVLE-DGKRILKLVEKPKEP-------------------PSNLAVVGLYMFRPLIFEAIKNIKPSWR-GELEITDAI 199 (353)
T ss_pred --EEEEc-CCCcEEEEEECCCCC-------------------CccceEEEEEEECHHHHHHHHhcCCCCC-CcEEHHHHH
Confidence 56665 457899999987522 1356789999999998888754221000 011233333
Q ss_pred cccc-cCceEEEEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCcEECCCCEEcCC
Q 007078 267 LDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSF 345 (619)
Q Consensus 267 ~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~I~~~ 345 (619)
+..+ .|.+|++|.+. +||.+|+++++|..+++.++.+....+.+ -.+.....+++++++++.| +++.|.++
T Consensus 200 ~~l~~~g~~v~~~~~~-g~w~digt~~dl~~a~~~ll~~~~~~~~~------i~~~~~i~~~~~i~~~~~i-~~~~i~~~ 271 (353)
T TIGR01208 200 QWLIEKGYKVGGSKVT-GWWKDTGKPEDLLDANRLILDEVEREVQG------VDDESKIRGRVVVGEGAKI-VNSVIRGP 271 (353)
T ss_pred HHHHHcCCeEEEEEeC-cEEEeCCCHHHHHHHHHHHHhhcccccCC------cCCCCEEcCCEEECCCCEE-eCCEEECC
Confidence 3332 46789999997 89999999999999999999853211110 0111233456777777777 66677677
Q ss_pred cEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCCCEECCC-cEEeceEECCCcEECCCCEECC--CCEECCCc
Q 007078 346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG-CELRHVIVCDGVIMKAGAVLKP--GVVLSFKV 421 (619)
Q Consensus 346 ~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~-~~I~~siIg~~v~Ig~~~~I~~--g~vIg~~v 421 (619)
+.||++|.|+ ++.| .+|+||++|.|+ +|.|.+|+|+++++|+.+ +.+.+++|++++.|+.++.|.. +.++|+.+
T Consensus 272 ~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~ 349 (353)
T TIGR01208 272 AVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYS 349 (353)
T ss_pred cEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCc
Confidence 7777777776 3444 366777777776 566677888888888777 3777777777777777777763 34555555
Q ss_pred EEC
Q 007078 422 VIG 424 (619)
Q Consensus 422 ~Ig 424 (619)
+|+
T Consensus 350 ~~~ 352 (353)
T TIGR01208 350 QVE 352 (353)
T ss_pred eec
Confidence 543
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.9e-37 Score=339.94 Aligned_cols=324 Identities=17% Similarity=0.231 Sum_probs=237.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
.++|||||+|+|+||++ ..||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+|+.+. ..+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-------~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-------GDVSF 72 (459)
T ss_pred cceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-------CceEE
Confidence 58999999999999985 789999999999999999999999999999999999999999999652 13556
Q ss_pred EeCCCccCHHHHHHHHHhhcccC---CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcc
Q 007078 108 IESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (619)
+.+...+|++++++.. +..+. +.||++.||+ +.+.+|..+++.|+.. ++.+|+...+.. +..+
T Consensus 73 ~~~~~~~Gt~~al~~a--~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-----~~~~~v~~~~~~-----~~~~ 140 (459)
T PRK14355 73 ALQEEQLGTGHAVACA--APALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-----GAAVTVLTARLE-----NPFG 140 (459)
T ss_pred EecCCCCCHHHHHHHH--HHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCc
Confidence 6667788999998864 34453 3599999997 6788999999999764 467777776543 2345
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchhHHHHhh
Q 007078 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHF 261 (619)
Q Consensus 183 ~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q~~r~df 261 (619)
|+ .+.+|. ++++..+.|+|...... -.+++..+|+|+++|+++ +++..-.....-...+
T Consensus 141 ~g----~v~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~ 200 (459)
T PRK14355 141 YG----RIVRDA-DGRVLRIVEEKDATPEE---------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY 200 (459)
T ss_pred CC----EEEEcC-CCCEEEEEEcCCCChhH---------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence 66 566774 67899999876321000 013567899999999864 4443211100001123
Q ss_pred hhhhccccc-cCceEEEEEccccc--hhhccChhhHHHHhHhhhhcccccccC-CccccCCCcceeeecceEEcCCcEEC
Q 007078 262 VKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYVP-DVKFCGNRATKLERRGMYRALEIEQS 337 (619)
Q Consensus 262 i~~vL~~~~-~g~~I~~~~~~~~y--~~~V~~~~sY~~~~~dil~r~~~p~~p-~~~~~~~~~~~~~~~~i~~~~~~~i~ 337 (619)
+.++++..+ .|.++++|.+. +| |.+++++++|.++++.+..+....+.. ...+.. ....+..++++++.++.|+
T Consensus 201 ~~d~i~~l~~~g~~v~~~~~~-~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~-~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 201 LTDIVAMAAAEGLRCLAFPVA-DPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID-PETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred HHHHHHHHHHCCCeEEEEEcC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC-CCceEECCCeEEcCCCEEe
Confidence 344444433 46789999987 55 899999999999977555432111100 000111 1123455678888999999
Q ss_pred CCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe
Q 007078 338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (619)
Q Consensus 338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (619)
++|.|++++.||++|.|+++++|.+|+||++|.|+.+++|.+++|++++.||++++|.
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~ 336 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLR 336 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEEC
Confidence 9999999999999999999999999999999999999999988888888887776663
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-37 Score=343.44 Aligned_cols=339 Identities=16% Similarity=0.203 Sum_probs=252.1
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCce
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~ 104 (619)
+-+.|+|||||+|+|+||+| ..||+|+|++|+|||+|+|+.|.++|+++|+|+++++.+++++|+.. ..
T Consensus 4 ~~~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~ 72 (481)
T PRK14358 4 QTRPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG 72 (481)
T ss_pred ccCCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC
Confidence 44679999999999999997 58999999999999999999999999999999999988999999853 23
Q ss_pred EEEEeCCCccCHHHHHHHHHhhcccC---CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007078 105 VKTIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH 179 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~ 179 (619)
+.++.++...|++++++... ..+. .+|++++||. +.+.+|..+++.|+++ ++.+|+++.+...
T Consensus 73 i~~v~~~~~~Gt~~al~~~~--~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-----~~~~ti~~~~~~~----- 140 (481)
T PRK14358 73 VAFARQEQQLGTGDAFLSGA--SALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-----GSAMTILTGELPD----- 140 (481)
T ss_pred cEEecCCCcCCcHHHHHHHH--HHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEEEcCC-----
Confidence 56666677789999988543 3342 4699999997 7788999999999875 4678888776542
Q ss_pred CcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhh---cCcc--h
Q 007078 180 QSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFT---DNFD--Y 254 (619)
Q Consensus 180 ~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~---dnfd--~ 254 (619)
..+|| ++.+|. .++|..|.|||...... ...+++.+|+|++++++++++. .... .
T Consensus 141 ~~~yG----~v~~d~-~g~v~~~~Ek~~~~~~~---------------~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge 200 (481)
T PRK14358 141 ATGYG----RIVRGA-DGAVERIVEQKDATDAE---------------KAIGEFNSGVYVFDARAPELARRIGNDNKAGE 200 (481)
T ss_pred CCCce----EEEECC-CCCEEEEEECCCCChhH---------------hhCCeEEEEEEEEchHHHHHHHhcCCCccCCe
Confidence 34677 778874 57999999987532100 0123467899999965544443 2111 0
Q ss_pred hHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHh-hhhcccc-cccCCccccCCCcceeeecceEEcC
Q 007078 255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD-IIQRWTY-PYVPDVKFCGNRATKLERRGMYRAL 332 (619)
Q Consensus 255 q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~d-il~r~~~-p~~p~~~~~~~~~~~~~~~~i~~~~ 332 (619)
-.+ .|+++.++. .|.++++|.+. ++|.-++....|+..+++ ++++-.+ .+.............+..+++++++
T Consensus 201 ~~l-~d~i~~~~~---~g~~i~~~~~~-~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~ 275 (481)
T PRK14358 201 YYL-TDLLGLYRA---GGAQVRAFKLS-DPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGR 275 (481)
T ss_pred EEH-HHHHHHHHH---CCCeEEEEecC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECC
Confidence 011 144443333 45689999886 788888888777665543 4443211 0000000000112233457888999
Q ss_pred CcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEE
Q 007078 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411 (619)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I 411 (619)
++.|+++|.|.+++.||++|.|+++|.|.+|+||++|.|+++++|.+++|++++.|+.++.|. +++||+++.|++++.|
T Consensus 276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 276 DVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999885 6888888888886554
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.5e-35 Score=326.55 Aligned_cols=357 Identities=18% Similarity=0.210 Sum_probs=258.6
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|+|||||+|+|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+.+++++.+ | .+.++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--~------~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--R------DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--C------CcEEE
Confidence 7899999999999997 78999999999999999999999999999999999998999999875 2 24445
Q ss_pred eCCCccCHHHHHHHHHhhcccC--CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
.+....|++++++.. ...+. +.|++++||. +...++..+++.|++. .+|+++.+.. +..+++
T Consensus 70 ~~~~~~G~~~ai~~a--~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-------~~~~~~~~~~-----~~~~~g 135 (451)
T TIGR01173 70 LQAEQLGTGHAVLQA--LPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN-------GITLLTAKLP-----DPTGYG 135 (451)
T ss_pred EcCCCCchHHHHHHH--HHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC-------CEEEEEEecC-----CCCCCC
Confidence 555667899988854 34453 3499999998 6677899999998652 1445554432 233455
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchh-----HHH
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQ-----HLR 258 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q-----~~r 258 (619)
.+.+|+ .+++..+.|+|...... . ...++.+|+|++++++| .++.+.+.-. .+
T Consensus 136 ----~v~~d~-~g~v~~~~ek~~~~~~~------~---------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~- 194 (451)
T TIGR01173 136 ----RIIREN-DGKVTAIVEDKDANAEQ------K---------AIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL- 194 (451)
T ss_pred ----EEEEcC-CCCEEEEEEcCCCChHH------h---------cCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH-
Confidence 566764 57899999886421100 0 12356789999999985 4444321100 01
Q ss_pred HhhhhhhccccccCceEEEEEccccc--hhhccChhhHHHHhHhhhhccccccc-CCccccCCCcceeeecceEEcCCcE
Q 007078 259 RHFVKGLLLDDIMGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIE 335 (619)
Q Consensus 259 ~dfi~~vL~~~~~g~~I~~~~~~~~y--~~~V~~~~sY~~~~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~~~ 335 (619)
.++++.++. .|.++++|.+. +| |.+++++..|..+...+..+-...+. +...+ ......+..+.+++++++.
T Consensus 195 ~~~~~~l~~---~g~~v~~~~~~-~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 195 TDVIALAVA---DGETVRAVQVD-DSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL-RDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred HHHHHHHHH---CCCeEEEEEcC-ChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE-ecCCeEEECCccEECCCCE
Confidence 234444333 46789999886 56 78899999887765544332111111 11111 1112334567888999999
Q ss_pred ECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCC
Q 007078 336 QSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPG 414 (619)
Q Consensus 336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g 414 (619)
|+++|.|++++.||++|.|+++|.|++++||++|.|+++|+|.+++|+++|.||+++.|. +++|+++|+||.++.+. +
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~-~ 348 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK-N 348 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec-C
Confidence 999999999999999999999999999999999999999999999999999999999997 58899999888887664 4
Q ss_pred CEECCC-----------cEECCCCEECCCCEEcC
Q 007078 415 VVLSFK-----------VVIGERFVVPAHSKVSL 437 (619)
Q Consensus 415 ~vIg~~-----------v~Ig~~~~i~~~~~v~~ 437 (619)
++|+++ |.||+++.|++++++..
T Consensus 349 ~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~ 382 (451)
T TIGR01173 349 ARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCN 382 (451)
T ss_pred cEECCCcEecceeeEeeeEEcCCcEECCCeEEeC
Confidence 555544 44555555555555543
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=328.68 Aligned_cols=334 Identities=16% Similarity=0.186 Sum_probs=238.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
..+.|||||+|.|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+++.... ..+.
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~------~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA------PEVD 73 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC------CccE
Confidence 357899999999999997 6899999999999999999999999999999999998889999886531 1345
Q ss_pred EEeCCCccCHHHHHHHHHhhcccC----CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcC
Q 007078 107 TIESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (619)
++.++...|++++++... ..+. ++||+++||. +...+|.++++.|+++ ++.+|++..+.. +.
T Consensus 74 ~~~~~~~~Gt~~si~~al--~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~-----~~~~~v~~~~~~-----~p 141 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCAL--EALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE-----GNAVTVLTTTLD-----DP 141 (482)
T ss_pred EEeCCCCCCcHHHHHHHH--HHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEeecC-----CC
Confidence 566677789999988543 3333 3499999998 5677999999999874 356666665543 34
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh-hhhcCcchhHHHH
Q 007078 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRR 259 (619)
Q Consensus 181 ~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~-lf~dnfd~q~~r~ 259 (619)
.+|+ .+..|. .++|..+.|||...... ...+++.+|+|++++++|. ++..-+....-..
T Consensus 142 ~~yg----~~~~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e 201 (482)
T PRK14352 142 TGYG----RILRDQ-DGEVTAIVEQKDATPSQ---------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGE 201 (482)
T ss_pred CCCC----EEEECC-CCCEEEEEECCCCCHHH---------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCc
Confidence 5666 555554 67899999997632110 1133568899999999984 3332111000001
Q ss_pred hhhhhhccccc-cCceEEEEEccccchhhccChhhH------HHHhHhhhhcccccccCCccccCCCcceeeecceEEcC
Q 007078 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY------DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL 332 (619)
Q Consensus 260 dfi~~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY------~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~ 332 (619)
.++.++++..+ .|.++++|.++ +||.+++.+..| ..++++++..|.-+.. . .. .....+..+++|+++
T Consensus 202 ~~l~d~i~~l~~~g~~V~~~~~~-g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~--~-~~-~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 202 LYLTDVLAIAREAGHRVGAHHAD-DSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGV--T-IV-DPATTWIDVDVTIGR 276 (482)
T ss_pred EeHHHHHHHHHHCCCeEEEEecC-CcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCC--E-EE-CCCeEEEeCCEEECC
Confidence 23344444333 45789999987 899999988887 5556666665532110 0 00 011345668899999
Q ss_pred CcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEECC
Q 007078 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKA 407 (619)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~ 407 (619)
++.|++++.|++++.||++|.|+++|+|.+++||++|.|+. +.+.+++|++++.||.+|.|. +++||+++.||.
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~ 351 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGA 351 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECC
Confidence 99999999999999999999999999998888888888764 566677777777777776664 555555555553
No 19
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-35 Score=324.64 Aligned_cols=314 Identities=13% Similarity=0.190 Sum_probs=197.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.|+|||||+|.|+||++ .+||+|+|++|+|||+|+|++|..+|+++++|++++..+++++++... .+.
T Consensus 4 ~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------~~~ 72 (456)
T PRK09451 4 SAMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------PLN 72 (456)
T ss_pred CCceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC--------CcE
Confidence 358999999999999984 689999999999999999999999999999999998888999998642 355
Q ss_pred EEeCCCccCHHHHHHHHHhhcccC--CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (619)
++.+....|++++++... .++. +.||+++||. +.+.++..+++.|++. + +++++.+.. ...+
T Consensus 73 ~i~~~~~~Gt~~al~~a~--~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-----~--~~i~~~~~~-----~~~~ 138 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAA--PFFADDEDILMLYGDVPLISVETLQRLRDAKPQG-----G--IGLLTVKLD-----NPTG 138 (456)
T ss_pred EEECCCCCCcHHHHHHHH--HhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC-----C--EEEEEEEcC-----CCCC
Confidence 566677789999988643 3343 3499999998 7788999999887542 2 223333322 2345
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh-hhhcCcchhHHHHhh
Q 007078 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRRHF 261 (619)
Q Consensus 183 ~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~-lf~dnfd~q~~r~df 261 (619)
|+ ++ .+. .++|..+.|||...... ...++..+|+|++++++|. ++..-.....-...+
T Consensus 139 yG----~v-~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~ 197 (456)
T PRK09451 139 YG----RI-TRE-NGKVVGIVEQKDATDEQ---------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY 197 (456)
T ss_pred ce----EE-Eec-CCeEEEEEECCCCChHH---------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence 66 44 443 67999999998521110 1124678999999998874 443321110001233
Q ss_pred hhhhccccc-cCceEEEEEcc-----ccc--hhhccChhhHHHHhH--hhhhcccccccCCccccCCCcceeeecceEEc
Q 007078 262 VKGLLLDDI-MGYKIFTHEIH-----SSY--AARIDNYRSYDIVSK--DIIQRWTYPYVPDVKFCGNRATKLERRGMYRA 331 (619)
Q Consensus 262 i~~vL~~~~-~g~~I~~~~~~-----~~y--~~~V~~~~sY~~~~~--dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~ 331 (619)
+.++++..+ .|.++++|... .+| |.+++++++|+++++ .++..-...+.|.. ....+.+.++
T Consensus 198 l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~--------~~~~~~~~ig 269 (456)
T PRK09451 198 ITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPAR--------FDLRGTLTHG 269 (456)
T ss_pred HHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCE--------EEECCcEEEC
Confidence 444444433 46799998632 255 566999999999874 23321100011110 1112334455
Q ss_pred CCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
.++.|+++|.|.+++.||++|.|+++|.|++|+||++|.|++++.|.+++|++++.|++++.|
T Consensus 270 ~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i 332 (456)
T PRK09451 270 RDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARL 332 (456)
T ss_pred CCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEE
Confidence 555555555555555555555555555555555555555555555544444444444443333
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=2.6e-36 Score=300.65 Aligned_cols=214 Identities=49% Similarity=0.849 Sum_probs=185.6
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCC--CceEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQP--NFTVK 106 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~--~~~I~ 106 (619)
+||||||+|+|+||+|||..+|||||||+|+|||+|+|++|.++|+++|+|+++++.+++++|+++..|+... .+.+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999986543221 25677
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCC
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~ 186 (619)
++.+++..++|+|++.+..+..+.++||+++||++++.+|.++++.|+++++..+++.||+++++.... .+++++..
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~---~~~~~~~~ 157 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPP---HRTRRTGE 157 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCc---cccccCCC
Confidence 777778889999999887777788889999999999999999999999976666789999999887643 23345545
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCC-cceEeehhhhhcCCceEEEeccccceeEecCHHHH
Q 007078 187 ELFMAIDPNTKQLLYYEDKADHSK-GTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (619)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~-~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl 245 (619)
..++.+|+.+++|+++.++|..+. ....+++.++..++.+.+++||+|+|||||+|+||
T Consensus 158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 568888877799999999997443 34679999999999999999999999999999985
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=319.71 Aligned_cols=340 Identities=14% Similarity=0.151 Sum_probs=220.2
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
.+.|||||+|.|+||+ ..+||+|+|++|+|||+|+++.|...|+++++|++++..+.+++++.. ..+.+
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~~~~ 73 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------EDARF 73 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------cCceE
Confidence 5899999999999997 378999999999999999999999999999999999988888888754 23555
Q ss_pred EeCCCccCHHHHHHHHHhhcccC----CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCc
Q 007078 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (619)
+.++...|++++++... .++. +.|++++||+ +...++..+++.|+. +.+|++..+.. ...
T Consensus 74 v~~~~~~Gt~~al~~a~--~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-------~~~~l~~~~~~-----~~~ 139 (456)
T PRK14356 74 VLQEQQLGTGHALQCAW--PSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-------ADLAFMTLTLP-----DPG 139 (456)
T ss_pred EEcCCCCCcHHHHHHHH--HHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-------CCEEEEEEEcC-----CCC
Confidence 66667788999888543 3342 3599999998 566789999988752 44566655543 233
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhh-hcCcchhHHHHh
Q 007078 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF-TDNFDYQHLRRH 260 (619)
Q Consensus 182 r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf-~dnfd~q~~r~d 260 (619)
+|+ ++.. ..+++..+.|+|..... . ..+ .++++.+|||+++++++..+ ..-.+...-...
T Consensus 140 ~~g----~v~~--~~g~V~~~~ek~~~~~~-------~--~~~----~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~ 200 (456)
T PRK14356 140 AYG----RVVR--RNGHVAAIVEAKDYDEA-------L--HGP----ETGEVNAGIYYLRLDAVESLLPRLTNANKSGEY 200 (456)
T ss_pred Cce----EEEE--cCCeEEEEEECCCCChH-------H--hhh----hcCeEEEEEEEEEHHHHHHHHHhccCcccCCcE
Confidence 555 4444 36899999998752100 0 000 14567899999999987543 211110000011
Q ss_pred hhhhhcccc-ccCceEEEEEccc-cchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCcEECC
Q 007078 261 FVKGLLLDD-IMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR 338 (619)
Q Consensus 261 fi~~vL~~~-~~g~~I~~~~~~~-~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i~~ 338 (619)
++..++... ..|.+++++...+ .+|.+|++++.|..+...+..+....+.................++++++++.|..
T Consensus 201 ~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~ 280 (456)
T PRK14356 201 YITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYG 280 (456)
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeC
Confidence 223333332 2577899998853 36799999999998766554432111110000000000111222344444444444
Q ss_pred CCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEE
Q 007078 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411 (619)
Q Consensus 339 ~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I 411 (619)
.|.|++++.||++|.|+++|.|.+++||++|.|+++|.|.+++|+++|.||++++|. +++|++++.||.++.|
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 455555667777777777777777777777777777777777777777777777665 5666666555555433
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.3e-34 Score=314.71 Aligned_cols=365 Identities=15% Similarity=0.154 Sum_probs=224.1
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceE
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
.+.+.|||||+|.|+||++ ..||+|+|++|+|||+|+|+.|..+|+++|+|++++..+.+.+++.+. +..+
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~------~~~~ 73 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI------APDA 73 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc------CCCc
Confidence 4568999999999999985 679999999999999999999999999999999999888999888652 1234
Q ss_pred EEEeCCCccCHHHHHHHHHhhccc---CCCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcC
Q 007078 106 KTIESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (619)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i---~~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (619)
.++.+....|++++++... ..+ .++|++++||. +....+..+++.+.. ++.+++...+.. ..
T Consensus 74 ~~~~~~~~~G~~~sl~~a~--~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~------~~~~~i~~~~~~-----~~ 140 (446)
T PRK14353 74 EIFVQKERLGTAHAVLAAR--EALAGGYGDVLVLYGDTPLITAETLARLRERLAD------GADVVVLGFRAA-----DP 140 (446)
T ss_pred eEEEcCCCCCcHHHHHHHH--HHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc------CCcEEEEEEEeC-----CC
Confidence 4445566778888887543 334 34599999997 555678888874332 244555554432 23
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchhHHHH
Q 007078 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRR 259 (619)
Q Consensus 181 ~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q~~r~ 259 (619)
.+++ ++.+ ..++|..+.|||...... ....+..+|+|++++..+ +++..-..-+.-..
T Consensus 141 ~~~g----~~~~--~~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 199 (446)
T PRK14353 141 TGYG----RLIV--KGGRLVAIVEEKDASDEE---------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE 199 (446)
T ss_pred Ccce----EEEE--CCCeEEEEEECCCCChHH---------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence 4555 4444 357899999987521100 011355679999998765 44432111000011
Q ss_pred hhhhhhccccc-cCceEEEEEccccchhhccChhhHHHHhHhhhhc----c---ccc-ccCCccccCCCcceeeecceEE
Q 007078 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR----W---TYP-YVPDVKFCGNRATKLERRGMYR 330 (619)
Q Consensus 260 dfi~~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r----~---~~p-~~p~~~~~~~~~~~~~~~~i~~ 330 (619)
.++.++++..+ .|.+++++..+..+|.+|+++++|..+...+..+ + ..+ +.|.. .+...+..+
T Consensus 200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I 271 (446)
T PRK14353 200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPET--------VFFSYDTVI 271 (446)
T ss_pred EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCe--------EEECCceEE
Confidence 23334443332 5778999988756899999999998877533221 1 011 11211 122233445
Q ss_pred cCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE---------------
Q 007078 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL--------------- 394 (619)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I--------------- 394 (619)
++++.|+++++|++++.||.+|.|++++.|.+++||++|.||++++|. +++|+++|.||++|.|
T Consensus 272 ~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~ 351 (446)
T PRK14353 272 GRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLT 351 (446)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCee
Confidence 555555555555555555555555555555555555555555555554 4555555555555544
Q ss_pred --eceEECCCcEECCCCEE-------CCCCEECCCcEECCCCEECCCCEEcCCccc
Q 007078 395 --RHVIVCDGVIMKAGAVL-------KPGVVLSFKVVIGERFVVPAHSKVSLLQQP 441 (619)
Q Consensus 395 --~~siIg~~v~Ig~~~~I-------~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~ 441 (619)
.+++||++|.||.++++ ..+++||++|.||.+++|.++++|+....+
T Consensus 352 ~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i 407 (446)
T PRK14353 352 YIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI 407 (446)
T ss_pred EEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE
Confidence 44555555555555444 224566666666666666655555554433
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.1e-34 Score=311.46 Aligned_cols=365 Identities=16% Similarity=0.121 Sum_probs=241.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.++|||||+|.|+||+| .+||+|+|++|+|||+|+++.|..+ +++|+|++++..+++++|+.+.. ..+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~------~~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF------PGVI 70 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC------CceE
Confidence 458899999999999997 7899999999999999999999987 78999999999999999997521 1244
Q ss_pred EEeC--CCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 107 TIES--HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 107 ~i~~--~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
++.+ ....|++++++.+. ...+.||+++||.... ....++.|.+. ++.+|+.+.+.. ++.+++
T Consensus 71 ~~~~~~~~~~gt~~al~~~~---~~~d~vlv~~gD~p~~--~~~~l~~l~~~-----~~~~~v~~~~~~-----~~~~~g 135 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIE---PKHERVLILNGDMPLV--EKDELEKLLEN-----DADIVMSVFHLA-----DPKGYG 135 (430)
T ss_pred EEEecCccCCCcHHHHhhcc---cCCCeEEEEECCccCC--CHHHHHHHHhC-----CCCEEEEEEEcC-----CCccCc
Confidence 4433 34578999988531 1234599999998321 12344445442 345666665543 233455
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcC-cchhHHHHhhhh
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-FDYQHLRRHFVK 263 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dn-fd~q~~r~dfi~ 263 (619)
.+.+| ++++..+.++|..... .....+..+|+|++++++|..+... .....-...++.
T Consensus 136 ----~v~~d--~g~v~~i~e~~~~~~~---------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~ 194 (430)
T PRK14359 136 ----RVVIE--NGQVKKIVEQKDANEE---------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLT 194 (430)
T ss_pred ----EEEEc--CCeEEEEEECCCCCcc---------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehh
Confidence 44454 5799999887642100 0113467889999999998755221 100000112333
Q ss_pred hhccccc-cCceEEEEEccccchhhccChhhHHHHhHhhhhcccc--------cccCCccccCCCcceeeecceEEcCCc
Q 007078 264 GLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTY--------PYVPDVKFCGNRATKLERRGMYRALEI 334 (619)
Q Consensus 264 ~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~--------p~~p~~~~~~~~~~~~~~~~i~~~~~~ 334 (619)
++++..+ .|.+++++..+..+|.+|+++++|..+...+..+-.. +..|...+.. .-....+.++++.++
T Consensus 195 d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~--~~~~i~g~~~ig~~~ 272 (430)
T PRK14359 195 DIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIE--SGVEFEGECELEEGV 272 (430)
T ss_pred hHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEEC--CCcEEcCceEECCCC
Confidence 3433322 4688999998767999999999999997554433110 0111111111 112234556677777
Q ss_pred EECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCC----------EECCCcEEeceEECCCcE
Q 007078 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNV----------IIEDGCELRHVIVCDGVI 404 (619)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v----------~Ig~~~~I~~siIg~~v~ 404 (619)
.|.++|.|+ ++.||++|.|++ +.|.+|+||++|.|+++++|.+|+|+++| +||+++.|.+|+||++|.
T Consensus 273 ~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ 350 (430)
T PRK14359 273 RILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTN 350 (430)
T ss_pred EECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCE
Confidence 777777775 777788888765 66678888998888888888877777777 566666777888888888
Q ss_pred ECCCCEECC-------CCEECCCcEECCCCEECCCCEEcCCccc
Q 007078 405 MKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKVSLLQQP 441 (619)
Q Consensus 405 Ig~~~~I~~-------g~vIg~~v~Ig~~~~i~~~~~v~~~~~~ 441 (619)
||.++++.. +++||++|.||.++.|.++++|+....+
T Consensus 351 ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i 394 (430)
T PRK14359 351 IGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLI 394 (430)
T ss_pred ECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEE
Confidence 888766643 2566666666666665555555544433
No 24
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2e-33 Score=290.57 Aligned_cols=356 Identities=19% Similarity=0.246 Sum_probs=261.5
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
.+.+||||+|.||||+. .+||.|-|++|+||++|+|+.....+.+++.+++++.++++++.+.+. .++.+
T Consensus 2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~v~~ 71 (460)
T COG1207 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DDVEF 71 (460)
T ss_pred CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cCceE
Confidence 57899999999999997 889999999999999999999999999999999999999999999752 25888
Q ss_pred EeCCCccCHHHHHHHHHhhccc----CCCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCc
Q 007078 108 IESHNIISAGDALRLIYEQNVI----HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i----~~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (619)
+.+.+++|||+|+... +..+ .+++|+++||+ +....|+.+++.|... ++.+|++..... .++
T Consensus 72 v~Q~eqlGTgHAV~~a--~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~-----~~~~tvLt~~~~-----dP~ 139 (460)
T COG1207 72 VLQEEQLGTGHAVLQA--LPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAH-----GAAATVLTAELD-----DPT 139 (460)
T ss_pred EEecccCChHHHHHhh--hhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhc-----CCceEEEEEEcC-----CCC
Confidence 8899999999999854 4555 24699999999 7777899999999975 366666666654 234
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcch-hHHHHh
Q 007078 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY-QHLRRH 260 (619)
Q Consensus 182 r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~-q~~r~d 260 (619)
-|| =+..+ ..++|..+.|..+..... . .-.-+++|+|+|....|.-+-....- ..-...
T Consensus 140 GYG----RIvr~-~~g~V~~IVE~KDA~~ee-------------k--~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 140 GYG----RIVRD-GNGEVTAIVEEKDASEEE-------------K--QIKEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred Ccc----eEEEc-CCCcEEEEEEcCCCCHHH-------------h--cCcEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 555 34444 367888888865422110 0 11235678888877755422111100 000223
Q ss_pred hhhhhccc-cccCceEEEEEccc-cchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCcEE--
Q 007078 261 FVKGLLLD-DIMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ-- 336 (619)
Q Consensus 261 fi~~vL~~-~~~g~~I~~~~~~~-~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i-- 336 (619)
++.+++.- ...|.++.++.+++ .-...|++-.....+.+-+-+|-. .-+.-.++++
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~--------------------~~~m~~GVtl~d 259 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA--------------------EKLMLAGVTLID 259 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH--------------------HHHHHcCcEEeC
Confidence 45555543 23678999998873 245567776555555443332211 0011123333
Q ss_pred CCCCEEcCCcEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCC
Q 007078 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415 (619)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~ 415 (619)
..+.+|...+.||.++.|.+++.+ +++.||++|+||++|+|.+|.|++++.|...++|++|.|++++.||+.+.|.||+
T Consensus 260 P~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~ 339 (460)
T COG1207 260 PATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA 339 (460)
T ss_pred CCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC
Confidence 234566677888888888888888 4889999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcEECC-----CCEECCCCEEcCCcccCCCC
Q 007078 416 VLSFKVVIGE-----RFVVPAHSKVSLLQQPTVHD 445 (619)
Q Consensus 416 vIg~~v~Ig~-----~~~i~~~~~v~~~~~~~~~~ 445 (619)
.|+++++||+ ++.|+++++++|++|.+|.+
T Consensus 340 ~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~ 374 (460)
T COG1207 340 VLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAE 374 (460)
T ss_pred cccCCCeEeeeEEEecccccCCccccceeeeccce
Confidence 9999999987 67789999999999999754
No 25
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.5e-33 Score=305.50 Aligned_cols=316 Identities=17% Similarity=0.223 Sum_probs=199.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|+|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|...+ ++|+|++++..+.+++|+.. + +.++
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-------~--~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-------W--VKIF 67 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-------c--cEEE
Confidence 7899999999999985 78999999999999999999999975 89999999888889888864 1 2345
Q ss_pred eCCCccCHHHHHHHHHhhcccC--CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
.+...+|++++++.. ..++. +.|++++||. +.+.++.++++.|+++ ++.+|+++.+.. +..+|+
T Consensus 68 ~~~~~~g~~~ai~~a--~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g 135 (448)
T PRK14357 68 LQEEQLGTAHAVMCA--RDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK-----GADVTILVADLE-----DPTGYG 135 (448)
T ss_pred ecCCCCChHHHHHHH--HHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----CCCCcE
Confidence 566778999998854 34453 3499999997 7888999999999774 477888887754 234666
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchhHHHHhhhh
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK 263 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q~~r~dfi~ 263 (619)
++.+| .+++ .+.++|..+... . ...+..+|+|++++++| +++.+-+....-...++.
T Consensus 136 ----~v~~d--~g~v-~~~e~~~~~~~~--------~-------~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (448)
T PRK14357 136 ----RIIRD--GGKY-RIVEDKDAPEEE--------K-------KIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLT 193 (448)
T ss_pred ----EEEEc--CCeE-EEEECCCCChHH--------h-------cCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHH
Confidence 55565 4677 777765321000 0 01356899999999985 445421100000011222
Q ss_pred hhccccccCceEEEEEccccchh--hccChhhHHHHhHhhhhccccccc-CCccccCCCcceeeecceEEcCCcEECCCC
Q 007078 264 GLLLDDIMGYKIFTHEIHSSYAA--RIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRSA 340 (619)
Q Consensus 264 ~vL~~~~~g~~I~~~~~~~~y~~--~V~~~~sY~~~~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 340 (619)
+++... .++++|... +||. .++++..+..+...+-.+-...+. +...+.. ....+..++++++.++.|++++
T Consensus 194 d~i~~~---~~v~~~~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~Ig~~~~i~~~~ 268 (448)
T PRK14357 194 DAVNFA---EKVRVVKTE-DLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILD-PNTTYIHYDVEIGMDTIIYPMT 268 (448)
T ss_pred HHHHhh---hheeEEecC-CHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeC-CCcEEEccceEECCCcEEcCCc
Confidence 333322 357888776 6744 566877776654332111000000 1101110 0112334566667777777777
Q ss_pred EEcCCcEECCCCEECCCcEEeceEECCCCEE----------------CCCcEEe-ceEECCCCEECCCcEEec
Q 007078 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTI----------------GSNVLIE-GSYIWDNVIIEDGCELRH 396 (619)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~I----------------g~~~~I~-~s~I~~~v~Ig~~~~I~~ 396 (619)
+|++++.||++|.|+++|.|.+|+||++|.| |++++|. +++|+++++||+++.+.+
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 341 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKK 341 (448)
T ss_pred EEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeec
Confidence 7766777777777777776655555555544 4444442 355555555555554433
No 26
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-32 Score=304.29 Aligned_cols=332 Identities=18% Similarity=0.224 Sum_probs=205.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.++|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|.++|+++++|+++++.+++++|+... +.
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------SE 68 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC---------cE
Confidence 468999999999999985 789999999999999999999999999999999999999999988541 33
Q ss_pred EEeCCCccCHHHHHHHHHhhcccC---CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (619)
++.+....|++++++... .++. +.|+++.||. +...+|..+++.|++. ++..|+++.... +..
T Consensus 69 ~~~~~~~~g~~~al~~a~--~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-----~~~~t~~~~~~~-----~~~ 136 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAE--EFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-----KAAATILTAIAE-----NPT 136 (458)
T ss_pred EEEcCCCCCHHHHHHHHH--HHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-----CCceEEEEEEcC-----CCC
Confidence 444566788999888553 3343 3499999996 6678999999999764 356677666543 233
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHH-HhhhhcCcchhHHHHh
Q 007078 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV-LSLFTDNFDYQHLRRH 260 (619)
Q Consensus 182 r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~v-l~lf~dnfd~q~~r~d 260 (619)
+++ ++.+|+ ++++..+.++|... +. . ....+..+|+|+++++. ++.+..-..-..-...
T Consensus 137 ~~g----~v~~d~-~~~V~~~~ek~~~~-------~~---~-----~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 137 GYG----RIIRNE-NGEVEKIVEQKDAT-------EE---E-----KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred Cce----EEEEcC-CCCEEEEEECCCCC-------hH---H-----hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 455 455664 67899999886411 00 0 01235678999999874 4554321100000001
Q ss_pred hhhhhccccc-cCceEEEEEccccc--hhhccChhhHHHHhHhhhhcccc-cccCCccccCCCcceeeecceEEcCCcEE
Q 007078 261 FVKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTY-PYVPDVKFCGNRATKLERRGMYRALEIEQ 336 (619)
Q Consensus 261 fi~~vL~~~~-~g~~I~~~~~~~~y--~~~V~~~~sY~~~~~dil~r~~~-p~~p~~~~~~~~~~~~~~~~i~~~~~~~i 336 (619)
++.+++...+ .|.++++|.++ ++ |.++.++.+|..+...+..++.. ...+...+.. +...+..+++.+++++.|
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~-g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~-~~~~~i~~~~~ig~~~~i 274 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTE-DFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID-PESTYIDADVEIGSDTVI 274 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecC-CcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC-CCeEEECCCcEECCCCEE
Confidence 1223332222 46789999886 44 45677888887776543332210 0001111100 111233445556666666
Q ss_pred CCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEE
Q 007078 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIM 405 (619)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~I 405 (619)
++++.|.+++.||++|.|++++.|.+++||++|.|+. +.+.+++|++++.||.+|.|. +++||++++|
T Consensus 275 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i 343 (458)
T PRK14354 275 EPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKI 343 (458)
T ss_pred eCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEE
Confidence 6666666666777777777777666655555555542 333444444444444444443 3333333333
No 27
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=1.3e-33 Score=280.78 Aligned_cols=209 Identities=27% Similarity=0.434 Sum_probs=174.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCC-hHHHHHHHHccCCCCCCCceEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
|||||||+|+|+||+|+|...||||||++|+|||+|+|++|.++|+++|+|+++++ .+.+++++....|....+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 79999999999999999999999999999999999999999999999999999964 46788988765453322344555
Q ss_pred EeCCCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC----CcCccc
Q 007078 108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI----THQSRL 183 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~----~~~~r~ 183 (619)
+.+....|+|++++.+.. .+.++|+|++||++++.++..+++.|++. ++.|||++.+..+... +.+.+.
T Consensus 81 ~~~~~~~gt~~al~~~~~--~i~~d~lv~~~D~i~~~~l~~~l~~h~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 81 IVLDEDMGTADSLRHIRK--KIKKDFLVLSCDLITDLPLIELVDLHRSH-----DASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred ecCCCCcChHHHHHHHHh--hcCCCEEEEeCccccccCHHHHHHHHhcc-----CCcEEEEEeccCCcccccCCcccccC
Confidence 556788999999997654 46888999999999999999999999874 5889999988653310 013455
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH
Q 007078 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (619)
Q Consensus 184 ~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl 245 (619)
..+..++++|+.++||++|..... ....+.+++.+|..+|++.+++||+|||||||+++|+
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEED-LDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHH-hhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 566789999999999999988542 2345677999999999999999999999999999875
No 28
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-31 Score=294.11 Aligned_cols=317 Identities=20% Similarity=0.267 Sum_probs=199.0
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
+.+||||+|.|+||++ .+||+|+|++|+|||+|+|+.|..+|+.+++|++++..+.+++++.+. ..+.++
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~-------~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL-------PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc-------CCeEEE
Confidence 6799999999999986 789999999999999999999999999999999999888899888642 135556
Q ss_pred eCCCccCHHHHHHHHHhhccc---CCCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCccc
Q 007078 109 ESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i---~~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (619)
.+....|++++++... ..+ .++|+++.||. +...++..+++.|++. ++.+|++..+.. +..+|
T Consensus 72 ~~~~~~G~~~sv~~~~--~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~-----~~~~~~~~~~~~-----~~~~~ 139 (450)
T PRK14360 72 EQQPQLGTGHAVQQLL--PVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS-----NADVTLLTARLP-----NPKGY 139 (450)
T ss_pred EeCCcCCcHHHHHHHH--HHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEecC-----CCCCc
Confidence 5666778888887543 223 34599999998 7788999999999874 356676665543 23456
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhh-hcCcchhHHHHhhh
Q 007078 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF-TDNFDYQHLRRHFV 262 (619)
Q Consensus 184 ~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf-~dnfd~q~~r~dfi 262 (619)
+ .+.+|+ .++|..+.|+|...... -.+++..+|+|+++++++..+ ........-...++
T Consensus 140 g----~~~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 140 G----RVFCDG-NNLVEQIVEDRDCTPAQ---------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred c----EEEECC-CCCEEEEEECCCCChhH---------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 6 566664 68999999987521000 013567889999999777433 22111000011233
Q ss_pred hhhccccccCceEEEEEccccch--hhccChhhHHHHhHh----hhhcccccccCCccccCCCcceeeecceEEcCCcEE
Q 007078 263 KGLLLDDIMGYKIFTHEIHSSYA--ARIDNYRSYDIVSKD----IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ 336 (619)
Q Consensus 263 ~~vL~~~~~g~~I~~~~~~~~y~--~~V~~~~sY~~~~~d----il~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i 336 (619)
.++++.. ..++.+.+. +++ ..++++..+..+..- +-..|..+-.+ +... ......++++++.++.|
T Consensus 200 td~i~~~---~~~~~~~v~-~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~---~i~~-~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 200 TDTVSLL---DPVMAVEVE-DYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT---FIDP-ASCTISETVELGPDVII 271 (450)
T ss_pred HHHHHHH---hhceEEecC-CHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE---EecC-CeEEEeCCEEECCCCEE
Confidence 3333332 124555554 344 448888877665433 22345433222 1110 11123345556666666
Q ss_pred CCCCEEcCCcEECCCCEECCCcEEece----------------EECCCCEECCCcEEe-ceEECCCCEECCCcEEe
Q 007078 337 SRSAQVGSFTVIGYGTKIGSNSKISDS----------------VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR 395 (619)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~s----------------vIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~ 395 (619)
++++.|++++.||++|.|++++.|.++ +||++|.||++|+|. ++.|+++|.|+.++.|.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence 666666666666666666666655543 344444444444443 34555555555544443
No 29
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=1.8e-32 Score=272.96 Aligned_cols=211 Identities=43% Similarity=0.722 Sum_probs=166.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCC-CCCceEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-QPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~-~~~~~I~~ 107 (619)
|||||||+|+|+||.|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+.+.+|+.+..|.. ..+..+.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999998876531 12233433
Q ss_pred E--eCCCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 108 I--ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 108 i--~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
+ .+....|++++++ ..+..+.+||||++||+++++++..++++ +|...+++.|||++....+.......|...
T Consensus 81 ~~~~~~~~~Gta~~l~--~~~~~i~~dflv~~gD~i~~~~l~~~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLR--DIRGLIRSDFLLLSCDLVSNIPLSELLEE---RRKKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHH--HHhhcCCCCEEEEeCCEeecCCHHHHHHH---HHhhCcccceEEEEEeccCCCCccccccCC
Confidence 3 3344555555555 56777888999999999999999999987 222334566777666655431101024445
Q ss_pred CceEEEEeCCC--CeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH
Q 007078 186 DELFMAIDPNT--KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (619)
Q Consensus 186 ~~~vv~~d~~~--~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl 245 (619)
+..++++|+++ .++++|.+++.. .....++..+|..+|++.+++||+|||||||+|+||
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEEDLDE-DLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCcEEEEcCCCCceEEEechhhcCc-CcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 56799999887 889999998753 234447999999999999999999999999999975
No 30
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.1e-31 Score=259.10 Aligned_cols=232 Identities=20% Similarity=0.279 Sum_probs=189.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHc-cCCCCCCCceEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVK 106 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~-~~~~~~~~~~I~ 106 (619)
|||||||+|.|||++|+|...||.||||.+||||.|.|+.|..+||++|.|++++ +...+++++.+ +.| +++++
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~----gv~it 76 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDF----GVDIT 76 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCcccc----CcceE
Confidence 7999999999999999999999999999999999999999999999999999997 67889999988 445 68999
Q ss_pred EEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
|+.|+++.|.++|+. .++.++. ++|+|+.||.++.-+|.++++.+.++. ...++++.++. .++|||
T Consensus 77 Y~~Q~~p~GlA~Av~--~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~-----~ga~i~~~~V~-----dP~rfG- 143 (286)
T COG1209 77 YAVQPEPDGLAHAVL--IAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEG-----SGATILLYEVD-----DPSRYG- 143 (286)
T ss_pred EEecCCCCcHHHHHH--HHHhhcCCCceEEEecCceeccChHHHHHHHhccC-----CCcEEEEEEcC-----Ccccce-
Confidence 999999999999988 5678898 569999999977669999999888753 56677888876 457999
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHH-hhhhh
Q 007078 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRR-HFVKG 264 (619)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~-dfi~~ 264 (619)
|+.+|. +++++..+|||..+ .++|.-+|+|++.|.|++.+..--.-. |. --+.+
T Consensus 144 ---V~e~d~-~~~v~~l~EKP~~P-------------------~SNlAvtGlY~~d~~Vf~~~~~ikPS~--RGElEITd 198 (286)
T COG1209 144 ---VVEFDE-DGKVIGLEEKPKEP-------------------KSNLAVTGLYFYDPSVFEAIKQIKPSA--RGELEITD 198 (286)
T ss_pred ---EEEEcC-CCcEEEeEECCCCC-------------------CCceeEEEEEEeChHHHHHHHcCCCCC--CCceEehH
Confidence 999985 45999999999754 267778899999999998875421110 11 11222
Q ss_pred hccccc-cCceEEEEEccccchhhccChhhHHHHhHhhhh
Q 007078 265 LLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (619)
Q Consensus 265 vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~ 303 (619)
+++..+ .|.++...... ++|.+++++.+|..++.-+..
T Consensus 199 ~i~~~i~~G~~~~~~~~~-G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 199 AIDLYIEKGYLVVAILIR-GWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred HHHHHHHcCcEEEEEEcc-ceEEecCChhhHHHHHHHHHH
Confidence 222222 46777776665 699999999999999988765
No 31
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.97 E-value=3.1e-30 Score=267.84 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=183.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCC---------
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF--------- 98 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~--------- 98 (619)
.|+|||||||+||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+... |.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~-~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTS-YELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhch-HHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999652 21
Q ss_pred -----------CCCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeech--------hhHHHHHHHHHHhhc
Q 007078 99 -----------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK 158 (619)
Q Consensus 99 -----------~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~H~~~~~ 158 (619)
...++++.++.+.+++|+|+|++. ++.++. ++|+|+.||++++ +++.++++.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~--a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~-- 157 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILC--ARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNET-- 157 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHH--HHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHh--
Confidence 012567889988999999999985 456676 4599999999887 6999999999754
Q ss_pred cCCCceEEEEEecCCCCCCCcCcccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehhhhhcCCceEEEecc
Q 007078 159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232 (619)
Q Consensus 159 ~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~---~~~---rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL 232 (619)
++.++++..... ...+|| ++.+|. ..+ +|..+.|||..+.. ..+++
T Consensus 158 ---~~~~~~~~~~~~-----~~~~yG----vv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------~~s~~ 209 (297)
T TIGR01105 158 ---GRSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL 209 (297)
T ss_pred ---CCcEEEEEEcCC-----CCccce----EEEecccccCCCCeeeEeEEEECCCCccc----------------CCcCE
Confidence 234444444321 345888 777742 134 56899999852211 12568
Q ss_pred ccceeEecCHHHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 233 ~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
+.+|+|+++|+++.++...-.... ....+.++++..+.+.+++++.+. ++|.+|+++++|..++.++
T Consensus 210 ~~~GiYi~~~~i~~~l~~~~~~~~-ge~~ltd~i~~l~~~~~v~~~~~~-g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 210 MAVGRYVLSADIWAELERTEPGAW-GRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEEEEECHHHHHHHhcCCCCCC-CeeeHHHHHHHHHhcCCEEEEEec-cEEECCCCHHHHHHHHHHH
Confidence 899999999999998865221110 111223344444445689999986 8999999999999998886
No 32
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.97 E-value=6.1e-30 Score=259.32 Aligned_cols=234 Identities=23% Similarity=0.396 Sum_probs=184.8
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEE-EccCChHHHHHHHHccC-CCCCCCceEE
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFV-FCCAHSKQVIDYLENSE-WFSQPNFTVK 106 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~v-v~~~~~~~i~~~l~~~~-~~~~~~~~I~ 106 (619)
+|||||+|+|+||+|+|..+||||||++|+ |||+|+|++|..+|++++++ +++++.+++.+|+++.. | ++++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~----~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKF----GVKIE 76 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGG----TEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccc----cccce
Confidence 699999999999999999999999999999 99999999999999999545 55578899999998854 3 36899
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCC-----CEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHG-----DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~-----dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (619)
++.++...|+|+|++.+ +..+.. +||+++||++++.++.++++.|+++.. ...+++...... +..
T Consensus 77 ~i~~~~~~Gta~al~~a--~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-----~~~ 146 (248)
T PF00483_consen 77 YIVQPEPLGTAGALLQA--LDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNA---DGTVTLLVVPVE-----DPS 146 (248)
T ss_dssp EEEESSSSCHHHHHHHT--HHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSS---CESEEEEEEESS-----GGG
T ss_pred eeecccccchhHHHHHH--HHHhhhccccceEEEEeccccccchhhhHHHhhhcccc---cccccccccccc-----ccc
Confidence 99889999999999965 344443 289999999999999999999999752 125555555543 456
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc---CcchhHHH
Q 007078 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD---NFDYQHLR 258 (619)
Q Consensus 182 r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d---nfd~q~~r 258 (619)
++| ++.+| .+++|+.+.|||..... +.++.+|+|+++++++..+.+ +.. -.
T Consensus 147 ~~g----~v~~d-~~~~V~~~~EKP~~~~~------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~---~~ 200 (248)
T PF00483_consen 147 RYG----VVEVD-EDGRVIRIVEKPDNPNA------------------SNLINTGIYIFKPEIFDFLLEMIKENA---RG 200 (248)
T ss_dssp GSE----EEEEE-TTSEEEEEEESCSSHSH------------------SSEEEEEEEEEETHHHHHHHHHHHTCT---TS
T ss_pred cce----eeeec-cceeEEEEeccCccccc------------------ceeccCceEEEcchHHHHHhhhhhccc---hh
Confidence 777 88898 47899999999863210 467889999999999998832 111 12
Q ss_pred Hhhhhhhccccc-cCceEEEEEcccc-chhhccChhhHHHHhHhhhh
Q 007078 259 RHFVKGLLLDDI-MGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQ 303 (619)
Q Consensus 259 ~dfi~~vL~~~~-~g~~I~~~~~~~~-y~~~V~~~~sY~~~~~dil~ 303 (619)
.+++.+++...+ .|..+.++...+. +|.+|++|++|.++++++++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 345555555543 3567778888744 89999999999999999875
No 33
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=9.8e-30 Score=255.98 Aligned_cols=229 Identities=20% Similarity=0.333 Sum_probs=185.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|+|||||+|+|+||+|+|..+||||+|++|+|||+|+|++|..+|+++|+|+++++.+++.+|+.+ |....++.+.+.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~--~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE--YEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc--ccccCCeEEEec
Confidence 789999999999999999999999999999999999999999999999999999999999999974 422235666665
Q ss_pred eCCCccCHHHHHHHHHhhcccC---CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 109 ESHNIISAGDALRLIYEQNVIH---GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
.+....|+++++... +..++ ++||+++||++++.++.++++.|+++ ++.+|+++.+.. +..+++
T Consensus 79 ~~~~~~G~~~al~~a--~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g- 145 (233)
T cd06425 79 IETEPLGTAGPLALA--RDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKH-----GAEGTILVTKVE-----DPSKYG- 145 (233)
T ss_pred cCCCCCccHHHHHHH--HHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHc-----CCCEEEEEEEcC-----CccccC-
Confidence 566778999998854 34454 46999999999999999999999885 467788887654 334666
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhh
Q 007078 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (619)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~v 265 (619)
++.+|..+++|+.+.|||.... ++++++|+|+++++++..+.+.+ ..+..++++.+
T Consensus 146 ---~v~~d~~~~~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~--~~~~~~~~~~l 201 (233)
T cd06425 146 ---VVVHDENTGRIERFVEKPKVFV-------------------GNKINAGIYILNPSVLDRIPLRP--TSIEKEIFPKM 201 (233)
T ss_pred ---eEEEcCCCCEEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhcccCc--ccchhhhHHHH
Confidence 7788865789999999975210 34678999999999999887643 12234555555
Q ss_pred ccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 266 L~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
+. ..++++|.++ +||.+|+++.+|..+++.+
T Consensus 202 ~~----~~~v~~~~~~-g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 202 AS----EGQLYAYELP-GFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred Hh----cCCEEEEeeC-CEEEcCCCHHHHHHHHHHh
Confidence 43 4589999996 8999999999999998764
No 34
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=9.6e-30 Score=259.93 Aligned_cols=234 Identities=20% Similarity=0.332 Sum_probs=183.6
Q ss_pred EEEEeCC--CCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHH-CCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 31 AILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 31 AVILA~g--~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~-~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
|||||+| +|+||+|+|..+||||+||+|+|||+|+|++|.. +|+++|+|++++..+++++|+++... ..++.+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~--~~~~~i~~ 78 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ--EFNVPIRY 78 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc--ccCceEEE
Confidence 6999999 8999999999999999999999999999999999 69999999999999999999986421 12467777
Q ss_pred EeCCCccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCccc
Q 007078 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (619)
+.+.+.+|+++|+..+ +.++. ++|||++||++++.++.++++.|+++ ++.+|+++++.... ...+|
T Consensus 79 ~~~~~~~Gt~~al~~a--~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~-----~~~~tl~~~~~~~~---~~~~y 148 (257)
T cd06428 79 LQEYKPLGTAGGLYHF--RDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKH-----GASGTILGTEASRE---QASNY 148 (257)
T ss_pred ecCCccCCcHHHHHHH--HHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHc-----CCCEEEEEEEcccc---ccccc
Confidence 7777788999998754 44442 45999999999999999999999875 46788888775322 24466
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcch-----h---
Q 007078 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY-----Q--- 255 (619)
Q Consensus 184 ~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~-----q--- 255 (619)
+ ++.+|..+++|+.+.|||... ..+++.+|+|+++++++..+.+...- +
T Consensus 149 g----~v~~d~~~g~v~~~~Ekp~~~-------------------~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~ 205 (257)
T cd06428 149 G----CIVEDPSTGEVLHYVEKPETF-------------------VSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGD 205 (257)
T ss_pred c----EEEEeCCCCeEEEEEeCCCCc-------------------ccceEEEEEEEECHHHHHHHhhhcccccccccccc
Confidence 6 777875568999999997521 13468899999999999887642110 0
Q ss_pred -------HHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHh
Q 007078 256 -------HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300 (619)
Q Consensus 256 -------~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~d 300 (619)
....++..++++..+...++++|.++ +||.+|+++++|.++++.
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~-g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTD-DFWSQIKTAGSAIYANRL 256 (257)
T ss_pred ccccccccceeeehhhhhhHHhccCCEEEecCC-CeeecCCCHHHHHhHhhc
Confidence 00112334555555555689999997 899999999999999875
No 35
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=1.8e-29 Score=262.60 Aligned_cols=239 Identities=15% Similarity=0.209 Sum_probs=185.8
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCC--------
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-------- 99 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~-------- 99 (619)
.|+|||||+|+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.. .|..
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~l~~~~~~~~ 81 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhc-chhHHHHHhhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999974 4421
Q ss_pred ------------CCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeech--------hhHHHHHHHHHHhhc
Q 007078 100 ------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK 158 (619)
Q Consensus 100 ------------~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~H~~~~~ 158 (619)
..++++.++.+.+++|+|+|++. ++.++. .+|+|+.||++++ +++.++++.|++.
T Consensus 82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~--a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~-- 157 (297)
T PRK10122 82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILC--ARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNET-- 157 (297)
T ss_pred hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHH--HHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHh--
Confidence 13567888888899999999985 456665 4599999999875 6899999999764
Q ss_pred cCCCceEEEEEecCCCCCCCcCcccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehhhhhcCCceEEEecc
Q 007078 159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232 (619)
Q Consensus 159 ~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~---~~~---rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL 232 (619)
++.++++..... ...+|| ++.+|. ..+ +|..+.|||..+.. ..+++
T Consensus 158 ---~~~~~~~~~~~~-----~~~~yG----vv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------~~s~~ 209 (297)
T PRK10122 158 ---GRSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL 209 (297)
T ss_pred ---CCcEEEEEECCC-----CCCCce----EEEecCcccCCCCeeeEEEEEECCCCccc----------------CCccE
Confidence 234444443322 345777 777752 234 78999999852110 12457
Q ss_pred ccceeEecCHHHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 233 ~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
+.+|+|||+|+++..+.+..... ....++.++++..+.+.++++|.++ ++|.+|+++++|..++.++
T Consensus 210 ~~~GiYi~~~~i~~~l~~~~~~~-~~e~~ltd~i~~l~~~~~v~~~~~~-G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 210 MAVGRYVLSADIWPELERTEPGA-WGRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEEEEECHHHHHHHHhCCCCC-CCeeeHHHHHHHHHhCCCEEEEEeC-CEEEcCCCHHHHHHHHHHH
Confidence 89999999999999886632111 0123344555554556789999987 8999999999999999987
No 36
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.96 E-value=4.6e-28 Score=250.99 Aligned_cols=230 Identities=17% Similarity=0.233 Sum_probs=177.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHccC-CCCCCCceE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSE-WFSQPNFTV 105 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~-~~~~~~~~I 105 (619)
.|+|||||+|+||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|++.+ ..+.+++|+++.. | ++++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~----g~~i 78 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GLNL 78 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCcccc----Ccee
Confidence 59999999999999999999999999999999999999999999999999987764 4788999998743 4 5778
Q ss_pred EEEeCCCccCHHHHHHHHHhhcccCC-CEEEEeCCe-echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCccc
Q 007078 106 KTIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (619)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (619)
.++.++.+.|+++|+.. ++.++.+ +|+|+.||. +++.+|.++++.|+++ ++.+|++..+.. .+.+|
T Consensus 79 ~y~~q~~~~Gta~Al~~--a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~-----~~~~tv~~~~v~-----~p~~y 146 (292)
T PRK15480 79 QYKVQPSPDGLAQAFII--GEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNK-----ESGATVFAYHVN-----DPERY 146 (292)
T ss_pred EEEECCCCCCHHHHHHH--HHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhC-----CCCeEEEEEEcC-----CcccC
Confidence 89988889999999885 4566754 599999997 4589999999999764 355677665543 34688
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchh----HHHH
Q 007078 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ----HLRR 259 (619)
Q Consensus 184 ~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q----~~r~ 259 (619)
| ++.+|. +++++.++|||..+ .+++..+|+|+++|++++.+..-.... .+ .
T Consensus 147 G----vv~~d~-~g~v~~i~EKP~~p-------------------~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-t 201 (292)
T PRK15480 147 G----VVEFDQ-NGTAISLEEKPLQP-------------------KSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-T 201 (292)
T ss_pred c----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-H
Confidence 8 888884 68999999998522 245778999999999999875321110 11 2
Q ss_pred hhhhhhccccccCceEEEEEcccc-chhhccChhhHHHHhHhhh
Q 007078 260 HFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDII 302 (619)
Q Consensus 260 dfi~~vL~~~~~g~~I~~~~~~~~-y~~~V~~~~sY~~~~~dil 302 (619)
|.++.++. .|.....+... + +|.+++++.+|..+++.+-
T Consensus 202 d~~~~~l~---~g~~~~~~~~~-g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 202 DINRIYME---QGRLSVAMMGR-GYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HHHHHHHh---cCCeEEEEecC-CcEEECCCCHHHHHHHHHHHH
Confidence 33333333 23333334444 6 5999999999999988764
No 37
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.96 E-value=6.1e-28 Score=244.01 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=174.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHcc-CCCCCCCceEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTVK 106 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~I~ 106 (619)
|+|||||+|+|+||+|+|..+||||+|++|+|||+|+|++|..+|+++|+|++++ +.+++.+|+... .| ++++.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~----~~~i~ 76 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDL----GIRIT 76 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccccc----CceEE
Confidence 7899999999999999999999999999999999999999999999999998875 468899999764 34 36677
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCC-CEEEEeCCe-echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
++.+....|+++|++. ++.++.+ +|+|++||. +.+.++.++++.|++. ++.+|+++.+.. ...+|+
T Consensus 77 ~~~~~~~~G~~~al~~--a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g 144 (240)
T cd02538 77 YAVQPKPGGLAQAFII--GEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQ-----KEGATVFGYEVN-----DPERYG 144 (240)
T ss_pred EeeCCCCCCHHHHHHH--HHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhc-----CCCcEEEEEECC-----chhcCc
Confidence 7777778899999984 4455654 499999997 5677899999999764 366777777654 234666
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhh
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~ 264 (619)
++.+|. .++|..+.+||.... .+++.+|+|+++|++++++.+...... ....+.+
T Consensus 145 ----~v~~d~-~g~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~~~~~-~~~~l~d 199 (240)
T cd02538 145 ----VVEFDE-NGRVLSIEEKPKKPK-------------------SNYAVTGLYFYDNDVFEIAKQLKPSAR-GELEITD 199 (240)
T ss_pred ----eEEecC-CCcEEEEEECCCCCC-------------------CCeEEEEEEEECHHHHHHHHhcCCCCC-CeEEhHH
Confidence 778874 579999999975221 245788999999999988853211000 0112223
Q ss_pred hccccccCceEEEEEcc-ccchhhccChhhHHHHhHhh
Q 007078 265 LLLDDIMGYKIFTHEIH-SSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 265 vL~~~~~g~~I~~~~~~-~~y~~~V~~~~sY~~~~~di 301 (619)
+++..+...++.++.++ ++||.+|+++++|..+++.+
T Consensus 200 ~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 200 VNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 33333333355555543 37999999999999998854
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.96 E-value=8.9e-28 Score=244.99 Aligned_cols=227 Identities=15% Similarity=0.234 Sum_probs=176.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-----CCC-----
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFS----- 99 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-----~~~----- 99 (619)
+|||||+|.|+||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+.+.. |..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 6899999999999999999999999999999999999999999999999999999999999997521 100
Q ss_pred --------CCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEe
Q 007078 100 --------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (619)
Q Consensus 100 --------~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~ 170 (619)
.+...+.++.+.+.+|+|+|++. ++.++. ++||+++||+++++++.++++.|++. ++.+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~--~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~-----~~d~tl~~~ 153 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--VREYLDDEAFCFTYGDGVADIDIKALIAFHRKH-----GKKATVTAV 153 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHH--HHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 00112334444566899999985 455666 56999999999999999999999875 466777654
Q ss_pred cCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc
Q 007078 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (619)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d 250 (619)
+ ...+|| ++.+| .++|..+.|||... ++++.+|||+++|++++++.+
T Consensus 154 ~-------~~~~yG----~v~~d--~~~V~~~~Ekp~~~--------------------~~~i~~Giyi~~~~il~~l~~ 200 (254)
T TIGR02623 154 Q-------PPGRFG----ALDLE--GEQVTSFQEKPLGD--------------------GGWINGGFFVLNPSVLDLIDG 200 (254)
T ss_pred c-------CCCccc----EEEEC--CCeEEEEEeCCCCC--------------------CCeEEEEEEEEcHHHHhhccc
Confidence 3 234666 67777 35899999987421 246789999999999988865
Q ss_pred CcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhh
Q 007078 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (619)
Q Consensus 251 nfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~ 303 (619)
... +...|+++.++. ..++++|.++ +||.+|+++++|.++++.+-+
T Consensus 201 ~~~--~~~~d~i~~l~~----~~~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 201 DAT--VWEQEPLETLAQ----RGELSAYEHS-GFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred cCc--hhhhhHHHHHHh----CCCEEEEeCC-CEEecCCchHHHHHHHHHHHc
Confidence 321 223455555543 3479999986 899999999999988877654
No 39
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.96 E-value=1.4e-27 Score=246.96 Aligned_cols=231 Identities=18% Similarity=0.232 Sum_probs=176.3
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEcc-CChHHHHHHHHcc-CCCCCCCceEEE
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTVKT 107 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~-~~~~~~~~~I~~ 107 (619)
+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|+++ ++.+.+++|+.+. .| ++++.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~----g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GVNLSY 76 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcccccc----CceEEE
Confidence 58999999999999999999999999999999999999999999999998886 5678899999764 34 578888
Q ss_pred EeCCCccCHHHHHHHHHhhcccCC-CEEEEeCCe-echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 108 IESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
+.++.+.|+++|++. ++.++.+ +|+|+.||. +++.+|.++++.|.++ ++.+|++..+.. .+.+||
T Consensus 77 ~~q~~~~Gta~al~~--a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~-----~~~~ti~~~~v~-----~p~~yG- 143 (286)
T TIGR01207 77 AVQPSPDGLAQAFII--GEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR-----ESGATVFAYQVS-----DPERYG- 143 (286)
T ss_pred EEccCCCCHHHHHHH--HHHHhCCCCEEEEECCEeccccCHHHHHHHHHhc-----CCCcEEEEEEcc-----CHHHCc-
Confidence 888889999999985 4556664 599999996 5688999999999764 355677766654 345888
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhh
Q 007078 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (619)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~v 265 (619)
++.+|. .++|+.+.|||..+ .+++..+|+|++++++++++..-..-.. ..-.+.++
T Consensus 144 ---vv~~d~-~g~V~~i~EKp~~~-------------------~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~eitdv 199 (286)
T TIGR01207 144 ---VVEFDS-NGRAISIEEKPAQP-------------------KSNYAVTGLYFYDNRVVEIARQLKPSAR-GELEITDL 199 (286)
T ss_pred ---eEEECC-CCeEEEEEECCCCC-------------------CCCEEEEEEEEEchHHHHHHhhcCCCCC-CcEeHHHH
Confidence 888884 68999999998521 1356789999999999988753211000 01122344
Q ss_pred ccccccCceEEEEEccccc-hhhccChhhHHHHhHhh
Q 007078 266 LLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDI 301 (619)
Q Consensus 266 L~~~~~g~~I~~~~~~~~y-~~~V~~~~sY~~~~~di 301 (619)
++..+..+++.++.+..++ |.+++++++|.+++..+
T Consensus 200 ~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~ 236 (286)
T TIGR01207 200 NRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFI 236 (286)
T ss_pred HHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 4333333344444443465 99999999999998765
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.95 E-value=1.6e-27 Score=244.74 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=179.7
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCC---------
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------- 99 (619)
|+|||||+|+|+||+|+|..+||||+||+|+|||+|+|+++.++|+++|+|+++++.+++.+|+... |..
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRS-YELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCc-HHHHHHHHhccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999652 210
Q ss_pred ----------CCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechh---hHHHHHHHHHHhhccCCCceE
Q 007078 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (619)
Q Consensus 100 ----------~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~H~~~~~~d~~a~m 165 (619)
..++.+.++.+...+|++++++.. ..++. ++|+|++||+++.. ++..+++.|+... +.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~--~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~- 151 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCA--KPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----AS- 151 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHH--HHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhC-----CC-
Confidence 014577788777889999999854 45565 45999999997764 5999999998642 33
Q ss_pred EEEEecCCCCCCCcCcccCCCceEEEEeCC---CCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCH
Q 007078 166 TMIIKKSKPSPITHQSRLGTDELFMAIDPN---TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (619)
Q Consensus 166 T~~~~~~~~~~~~~~~r~~~~~~vv~~d~~---~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp 242 (619)
++++....+. ...+++ ++.+|.. .++|..+.|||..... .+.+..+|+|++++
T Consensus 152 ~~~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (267)
T cd02541 152 VIAVEEVPPE---DVSKYG----IVKGEKIDGDVFKVKGLVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (267)
T ss_pred EEEEEEcChh---cCccce----EEEeecCCCCceEEeEEEECCCCCCC-----------------CCceEEEEEEEcCH
Confidence 3444443322 334666 7788752 4589999999752110 13467799999999
Q ss_pred HHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhh
Q 007078 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302 (619)
Q Consensus 243 ~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil 302 (619)
+++..+.+... ......++.++++..+..++|++|.++ +||.+|+++++|.++++++.
T Consensus 208 ~~~~~l~~~~~-~~~~e~~~~d~i~~l~~~~~v~~~~~~-g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 208 DIFDILENTKP-GKGGEIQLTDAIAKLLEEEPVYAYVFE-GKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHhCCC-CCCCcEEHHHHHHHHHhcCCEEEEEee-eEEEeCCCHHHHHHHHHHHh
Confidence 99987754110 000112334444444444589999997 89999999999999999863
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=2e-27 Score=237.15 Aligned_cols=219 Identities=20% Similarity=0.283 Sum_probs=172.2
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEe
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~ 109 (619)
+|||||+|.|+||+|+|..+||||+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.+..| ++.+.++.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~----~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRF----GLRITISD 76 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccC----CceEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999987334 46777776
Q ss_pred CC-CccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCc
Q 007078 110 SH-NIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE 187 (619)
Q Consensus 110 ~~-~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~ 187 (619)
+. +..|++++++.. +..+. ++|++++||++++.++.++++.|+++. .++.+|+...+.. +..+++
T Consensus 77 ~~~~~~g~~~~l~~~--~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~g--- 143 (221)
T cd06422 77 EPDELLETGGGIKKA--LPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRM---DALLLLLPLVRNP-----GHNGVG--- 143 (221)
T ss_pred CCCcccccHHHHHHH--HHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhcc---CCCceEEEEEEcC-----CCCCcc---
Confidence 65 567899998854 44555 569999999999999999999998621 3567777765543 234555
Q ss_pred eEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhhcc
Q 007078 188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLL 267 (619)
Q Consensus 188 ~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~ 267 (619)
++.+|. .++|..+.++|. ..++.+|+|+++|+++..+.+.. + .+ .|+++.+
T Consensus 144 -~v~~d~-~~~v~~~~~~~~----------------------~~~~~~Giyi~~~~~l~~l~~~~-~-~~-~d~~~~l-- 194 (221)
T cd06422 144 -DFSLDA-DGRLRRGGGGAV----------------------APFTFTGIQILSPELFAGIPPGK-F-SL-NPLWDRA-- 194 (221)
T ss_pred -eEEECC-CCcEeecccCCC----------------------CceEEEEEEEEcHHHHhhCCcCc-c-cH-HHHHHHH--
Confidence 677775 578888887753 14578899999999998776541 1 11 2444444
Q ss_pred ccccCceEEEEEccccchhhccChhhHHHH
Q 007078 268 DDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 268 ~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
+...++++|..+ +||.+|+++++|..+
T Consensus 195 --~~~~~~~~~~~~-g~w~di~t~~~~~~a 221 (221)
T cd06422 195 --IAAGRLFGLVYD-GLWFDVGTPERLLAA 221 (221)
T ss_pred --HHcCCeEEEecC-CEEEcCCCHHHHhhC
Confidence 334578888865 899999999999753
No 42
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.95 E-value=2.9e-27 Score=246.50 Aligned_cols=240 Identities=14% Similarity=0.160 Sum_probs=183.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-CC------
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WF------ 98 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~------ 98 (619)
...|+|||+|+|.|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|+.... |.
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 34699999999999999999999999999999999999999999999999999999999999999997531 21
Q ss_pred ------------CCCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeech--------hhHHHHHHHHHHhh
Q 007078 99 ------------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERK 157 (619)
Q Consensus 99 ------------~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~H~~~~ 157 (619)
..++..+.++.+.+..|+|+|++.. +.++. ++|+|++||++++ .+|.++++.|++.
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a--~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~- 162 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA--HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDET- 162 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHH--HHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhc-
Confidence 0123466777777889999999854 34454 4599999999864 7999999999764
Q ss_pred ccCCCceEEEEEecCCCCCCCcCcccCCCceEEEEeC------CCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEec
Q 007078 158 KKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP------NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHND 231 (619)
Q Consensus 158 ~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~------~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~d 231 (619)
++. |+++.+.. ...+|| ++.+|. .+++|..+.|||..... .++
T Consensus 163 ----~~~-tl~~~~~~-----~~~~yG----vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-----------------~s~ 211 (302)
T PRK13389 163 ----GHS-QIMVEPVA-----DVTAYG----VVDCKGVELAPGESVPMVGVVEKPKADVA-----------------PSN 211 (302)
T ss_pred ----CCC-EEEEEEcc-----cCCcce----EEEecCcccccCCcceEEEEEECCCCCCC-----------------Ccc
Confidence 233 55555542 345777 777653 24589999999862110 135
Q ss_pred cccceeEecCHHHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 232 KQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 232 L~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
++.+|+|+++|++++++.....-. -...++.++++..+.+.++++|.++ +||.+|++++.|..++.++
T Consensus 212 ~~~~GiYi~~~~il~~l~~~~~~~-~~e~~l~d~i~~l~~~~~v~~~~~~-G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 212 LAIVGRYVLSADIWPLLAKTPPGA-GDEIQLTDAIDMLIEKETVEAYHMK-GKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEEEEEEECHHHHHHHHhCCCCC-CCeeeHHHHHHHHHHcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 678999999999999886532111 0123444555544445689999987 8999999999999998885
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.95 E-value=3.7e-27 Score=241.06 Aligned_cols=234 Identities=15% Similarity=0.216 Sum_probs=173.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCC---------
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------- 99 (619)
|+|||||+|+|+||+|+|..+||||+|++|+|||+|+|++|..+|+++|+|+++++.+++.+|+.+. |..
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTS-YELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhccc-HHHHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999742 210
Q ss_pred ----------CCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechh---hHHHHHHHHHHhhccCCCceE
Q 007078 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (619)
Q Consensus 100 ----------~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~H~~~~~~d~~a~m 165 (619)
.+++.+.++.+....|++++++.. +.++. ++|+|++||.++.. ++.++++.|++. ++.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~--~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~-----~~~i 152 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCA--EPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKY-----GCSI 152 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHHHH--HHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHh-----CCCE
Confidence 012456666667788999999854 45554 45999999997653 799999999875 2443
Q ss_pred EEEEecCCCCCCCcCcccCCCceEEEEe---CCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCH
Q 007078 166 TMIIKKSKPSPITHQSRLGTDELFMAID---PNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (619)
Q Consensus 166 T~~~~~~~~~~~~~~~r~~~~~~vv~~d---~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp 242 (619)
+++...... ...+++ ++.+| ...++|..+.|||..... ..+++.+|+|++++
T Consensus 153 -i~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (260)
T TIGR01099 153 -IAVEEVPKE---EVSKYG----VIDGEGVEEGLYEIKDMVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (260)
T ss_pred -EEEEECChh---hcccCc----eEEeccccCCceeEEEEEECCCCCCC-----------------CCceEEEEEEECCH
Confidence 344433322 345676 67776 234799999999852211 13467899999999
Q ss_pred HHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHH
Q 007078 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 243 ~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
+++..+.+...- .....++.+++...+...++++|.++ +||.+|+++++|.++
T Consensus 208 ~~~~~l~~~~~~-~~~~~~l~d~i~~l~~~~~v~~~~~~-g~w~digs~~~y~~a 260 (260)
T TIGR01099 208 DIFDLLEETPPG-AGGEIQLTDALRKLLEKETVYAYKFK-GKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHhCCCC-CCCceeHHHHHHHHHhcCCEEEEEcc-eEEEeCCCHHHHhhC
Confidence 999887542110 00112334444444445689999997 899999999999863
No 44
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.95 E-value=1.5e-26 Score=233.00 Aligned_cols=229 Identities=14% Similarity=0.286 Sum_probs=181.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHcc-CCCCCCCceEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~I~~ 107 (619)
|+|||||+|.|+||+|+|...||||+||+|+|||+|+|++|.++|+++|+|+++++.+.+.+|+++. +| ++++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~----~~~i~~ 76 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF----GVRITY 76 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc----CCeEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999763 23 366777
Q ss_pred EeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCC
Q 007078 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~ 186 (619)
+.+...+|++++++.. +..+. .+||+++||++++.++.++++.|+.+ ++.+|+++.+.. +..+++
T Consensus 77 ~~~~~~~g~~~sl~~a--~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g-- 142 (236)
T cd04189 77 ILQEEPLGLAHAVLAA--RDFLGDEPFVVYLGDNLIQEGISPLVRDFLEE-----DADASILLAEVE-----DPRRFG-- 142 (236)
T ss_pred EECCCCCChHHHHHHH--HHhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCceEEEEEECC-----Ccccce--
Confidence 7777788999999854 45565 66999999999999999999999865 356777776643 234555
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcch----hHHHHhhh
Q 007078 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY----QHLRRHFV 262 (619)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~----q~~r~dfi 262 (619)
++.+| .++|..+.+||... .+++..+|||+++|+++..+...... -.+ .|++
T Consensus 143 --~~~~d--~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~ 198 (236)
T cd04189 143 --VAVVD--DGRIVRLVEKPKEP-------------------PSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAI 198 (236)
T ss_pred --EEEEc--CCeEEEEEECCCCC-------------------CCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHH
Confidence 66676 35899999887421 13456789999999999877431110 011 2444
Q ss_pred hhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhh
Q 007078 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (619)
Q Consensus 263 ~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~ 303 (619)
..++. .|.+|+++.++ +||.+|+++++|..+++.++.
T Consensus 199 ~~~i~---~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 199 QWLID---RGRRVGYSIVT-GWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHH---cCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHHh
Confidence 44433 46789999987 799999999999999998875
No 45
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.95 E-value=1.2e-26 Score=236.55 Aligned_cols=225 Identities=15% Similarity=0.227 Sum_probs=172.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCC----------
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---------- 100 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~---------- 100 (619)
|||||+|+|+||+|+|..+||||+||+|+|||+|+++.+..+|+++|+|+++++.+++++|+++..+...
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999976321100
Q ss_pred --------CCceEEEEeCCCccCHHHHHHHHHhhcccC--CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEe
Q 007078 101 --------PNFTVKTIESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (619)
Q Consensus 101 --------~~~~I~~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~ 170 (619)
.++.++++.+....++|++++.. +..+. ++||+++||++++.++..+++.|+.. ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a--~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~-----~~~~tl~~~ 153 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRV--RRYLGDDETFMLTYGDGVSDVNINALIEFHRSH-----GKLATVTAV 153 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHH--HHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 01222223233356789988854 45565 45999999999999999999999764 577887765
Q ss_pred cCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc
Q 007078 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (619)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d 250 (619)
.. ..+++ ++.+|. +++|..+.+||... +.++.+|||+++|++++.+..
T Consensus 154 ~~-------~~~~g----~v~~d~-~g~V~~~~ekp~~~--------------------~~~i~~Giyi~~~~l~~~l~~ 201 (253)
T cd02524 154 HP-------PGRFG----ELDLDD-DGQVTSFTEKPQGD--------------------GGWINGGFFVLEPEVFDYIDG 201 (253)
T ss_pred cC-------CCccc----EEEECC-CCCEEEEEECCCCC--------------------CceEEEEEEEECHHHHHhhcc
Confidence 31 23555 677875 58999999987521 134678999999999988765
Q ss_pred CcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 251 nfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
. +.++..++++..+...++++|.++ +||.+|+++.+|..+...+
T Consensus 202 ~------~~~~~~d~l~~li~~~~v~~~~~~-g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 202 D------DTVFEREPLERLAKDGELMAYKHT-GFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred c------cchhhHHHHHHHHhcCCEEEEecC-CEEEeCcCHHHHHHHHHHH
Confidence 3 122333444444444588999987 7999999999999988554
No 46
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.94 E-value=3.8e-26 Score=226.43 Aligned_cols=215 Identities=22% Similarity=0.424 Sum_probs=174.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-CCCCCCceEEEEe
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~I~~i~ 109 (619)
|||||+|.|+||+|+|..+||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+.+++|+.+.. | ++.+.++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF----GVNIEYVV 76 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc----CceEEEEe
Confidence 699999999999999999999999999999999999999999999999999998899999997642 3 35677777
Q ss_pred CCCccCHHHHHHHHHhhccc-CCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCce
Q 007078 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (619)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~ 188 (619)
+....|++++++.. ...+ .++|++++||++++.++.++++.|+.. ++.+|+++.+.. +..+++
T Consensus 77 ~~~~~g~~~al~~~--~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (217)
T cd04181 77 QEEPLGTAGAVRNA--EDFLGDDDFLVVNGDVLTDLDLSELLRFHREK-----GADATIAVKEVE-----DPSRYG---- 140 (217)
T ss_pred CCCCCccHHHHHHh--hhhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCCEEEEEEEcC-----CCCcce----
Confidence 76778999999865 3445 456999999999999999999999874 467888887654 234555
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhhccc
Q 007078 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (619)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~ 268 (619)
++.+|. .++|..+.++|.... .++..+|+|++++++++++.+++. ...+++..+++.
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~~-------------------~~~~~~Giy~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 197 (217)
T cd04181 141 VVELDD-DGRVTRFVEKPTLPE-------------------SNLANAGIYIFEPEILDYIPEILP---RGEDELTDAIPL 197 (217)
T ss_pred EEEEcC-CCcEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhhhhcCC---cccccHHHHHHH
Confidence 677775 589999999875321 346789999999999998877653 123555666666
Q ss_pred cccCceEEEEEccccchhhcc
Q 007078 269 DIMGYKIFTHEIHSSYAARID 289 (619)
Q Consensus 269 ~~~g~~I~~~~~~~~y~~~V~ 289 (619)
.+...++++|.++ +||.+|+
T Consensus 198 l~~~~~v~~~~~~-g~w~dig 217 (217)
T cd04181 198 LIEEGKVYGYPVD-GYWLDIG 217 (217)
T ss_pred HHhcCCEEEEEcC-CEEecCC
Confidence 5555789999997 7999875
No 47
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.94 E-value=1.1e-25 Score=224.14 Aligned_cols=219 Identities=21% Similarity=0.367 Sum_probs=174.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHcc-CCCCCCCceEEEEe
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKTIE 109 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~I~~i~ 109 (619)
|||||+|+|+||+|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.+. +| ++++.++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKF----GVNISYVR 76 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcccc----CccEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999763 23 35677777
Q ss_pred CCCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCceE
Q 007078 110 SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELF 189 (619)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~v 189 (619)
+....|++++++.+. ..+.++|+|++||.+++.++..+++.|++. ++.+|+++.+..+ ...++ +
T Consensus 77 ~~~~~g~~~~l~~~~--~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~-----~~~~g----~ 140 (220)
T cd06426 77 EDKPLGTAGALSLLP--EKPTDPFLVMNGDILTNLNYEHLLDFHKEN-----NADATVCVREYEV-----QVPYG----V 140 (220)
T ss_pred CCCCCcchHHHHHHH--hhCCCCEEEEcCCEeeccCHHHHHHHHHhc-----CCCEEEEEEEcCC-----CCcce----E
Confidence 667789999987553 334667999999999999999999999874 4677777766432 12344 6
Q ss_pred EEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhhcccc
Q 007078 190 MAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDD 269 (619)
Q Consensus 190 v~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~~ 269 (619)
+.+|. ++|..+.++|.. +.++.+|+|+++|.++..+.++-.| .+ .++++.++.
T Consensus 141 ~~~d~--~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~i~~~~~~-~l-~~~~~~~i~-- 193 (220)
T cd06426 141 VETEG--GRITSIEEKPTH---------------------SFLVNAGIYVLEPEVLDLIPKNEFF-DM-PDLIEKLIK-- 193 (220)
T ss_pred EEECC--CEEEEEEECCCC---------------------CCeEEEEEEEEcHHHHhhcCCCCCc-CH-HHHHHHHHH--
Confidence 66663 899999998642 2356789999999999888764322 22 245555444
Q ss_pred ccCceEEEEEccccchhhccChhhHHHHh
Q 007078 270 IMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (619)
Q Consensus 270 ~~g~~I~~~~~~~~y~~~V~~~~sY~~~~ 298 (619)
.|.+|++|.++ ++|.+|+++.+|.+++
T Consensus 194 -~~~~i~~~~~~-~~w~~igt~~dl~~a~ 220 (220)
T cd06426 194 -EGKKVGVFPIH-EYWLDIGRPEDYEKAN 220 (220)
T ss_pred -CCCcEEEEEeC-CeEEeCCCHHHHHhhC
Confidence 45689999997 8999999999998764
No 48
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.94 E-value=3.4e-25 Score=220.35 Aligned_cols=220 Identities=18% Similarity=0.341 Sum_probs=172.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-CCCCCCceEEEEe
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~I~~i~ 109 (619)
|||||+|.|+||+|+|...||+|+|++|+|||+|+|++|.++|+++|+|+++++.+.+.+|+.... | ++.+.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~----~~~~~~~~ 76 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG----GIRIYYVI 76 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc----CceEEEEE
Confidence 699999999999999999999999999999999999999999999999999998899999997643 3 35566666
Q ss_pred CCCccCHHHHHHHHHhhccc-CCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCce
Q 007078 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (619)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~ 188 (619)
.....|+++++... +..+ .++|++++||++++.++.++++.|++. ++.+++++.+.. ...+++
T Consensus 77 ~~~~~G~~~~l~~a--~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (223)
T cd06915 77 EPEPLGTGGAIKNA--LPKLPEDQFLVLNGDTYFDVDLLALLAALRAS-----GADATMALRRVP-----DASRYG---- 140 (223)
T ss_pred CCCCCcchHHHHHH--HhhcCCCCEEEEECCcccCCCHHHHHHHHHhC-----CCcEEEEEEECC-----CCCcce----
Confidence 66778999988754 3445 456999999999999999999999863 466677776643 223444
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhhhhhccc
Q 007078 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (619)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi~~vL~~ 268 (619)
++.+|. +++|+.+.++|... ++.+..+|||+++|+++..+.+. .+. ...++++.++.
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~l~~~~~~-~~~-~~~~~~~~l~~- 197 (223)
T cd06915 141 NVTVDG-DGRVIAFVEKGPGA-------------------APGLINGGVYLLRKEILAEIPAD-AFS-LEADVLPALVK- 197 (223)
T ss_pred eEEECC-CCeEEEEEeCCCCC-------------------CCCcEEEEEEEECHHHHhhCCcc-CCC-hHHHHHHHHHh-
Confidence 667775 58999999886421 24567899999999999887643 111 12355554443
Q ss_pred cccCceEEEEEccccchhhccChhhHHHH
Q 007078 269 DIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 269 ~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
..++++|++. ++|.+|+++.+|..+
T Consensus 198 ---~~~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 198 ---RGRLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred ---cCcEEEEecC-CeEEecCCHHHHHhh
Confidence 3489999997 899999999999865
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=9.1e-24 Score=208.52 Aligned_cols=244 Identities=15% Similarity=0.228 Sum_probs=189.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC----------
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE---------- 96 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~---------- 96 (619)
+..+|||+|+|+||||.|.|+..||-||||.++|+|+|+++.+..+|+++|+++++.+...|++|+..+.
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~ 82 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG 82 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence 4689999999999999999999999999999999999999999999999999999999889999986531
Q ss_pred --------CCCCCCceEEEEeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCeechh---hHHHHHHHHHHhhccCCCce
Q 007078 97 --------WFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDTVSNM---LLTQALQEHKERKKKDNNAV 164 (619)
Q Consensus 97 --------~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~i~~~---~l~~~l~~H~~~~~~d~~a~ 164 (619)
.......++.++.+.+++|+|+|+. .++.++.++ |.|+.+|.++.. .+.++++.+.+.. +.
T Consensus 83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl--~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g----~s- 155 (291)
T COG1210 83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVL--CAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETG----GS- 155 (291)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCCcchhHHH--hhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhC----Cc-
Confidence 0001356899999999999999988 467889876 999999997654 6778888877753 22
Q ss_pred EEEEEecCCCCCCCcCcccCCCceEEE----EeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEec
Q 007078 165 MTMIIKKSKPSPITHQSRLGTDELFMA----IDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (619)
Q Consensus 165 mT~~~~~~~~~~~~~~~r~~~~~~vv~----~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~ic 240 (619)
++.+.+..+. ...+|| ++. ++....+|..+.|||.+... .++|.-.|-||+
T Consensus 156 -vi~v~ev~~e---~v~kYG----vi~~g~~~~~~~~~v~~~VEKP~~~~A-----------------PSnlai~GRYil 210 (291)
T COG1210 156 -VIGVEEVPPE---DVSKYG----VIDPGEPVEKGVYKVKGMVEKPKPEEA-----------------PSNLAIVGRYVL 210 (291)
T ss_pred -EEEEEECCHH---HCcccc----eEecCccccCCeEEEEEEEECCCCCCC-----------------Ccceeeeeeeec
Confidence 3556666554 567888 665 54445799999999974321 367778899999
Q ss_pred CHHHHhhhhcCcchhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhc
Q 007078 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR 304 (619)
Q Consensus 241 sp~vl~lf~dnfd~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r 304 (619)
+|+++++++..-.- ....-=+.+.|...+....+++|.+. +-..++++...|..++.++..+
T Consensus 211 ~p~IFd~L~~~~~G-~ggEiQLTDai~~L~~~~~v~a~~~~-GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 211 TPEIFDILEETKPG-AGGEIQLTDAIKKLLKKEPVLAYVFE-GKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred CHHHHHHHhhCCCC-CCCEeeHHHHHHHHHhhCcEEEEEec-ccEEccCCcccHHHHHHHHHhh
Confidence 99999998763110 00001123344444556899999997 7888999999999999887543
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.90 E-value=1.8e-23 Score=205.54 Aligned_cols=186 Identities=25% Similarity=0.324 Sum_probs=138.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccC-CCCC---CCceE
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQ---PNFTV 105 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~---~~~~I 105 (619)
|||||+|+|+||+|+|..+||+|+||+|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.+.. |... .++.+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI 80 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence 69999999999999999999999999998 9999999999999999999999999999999997643 4221 12223
Q ss_pred EEEe----CCCccCHHHHHHHHHhhcccC----CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007078 106 KTIE----SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (619)
Q Consensus 106 ~~i~----~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~ 177 (619)
.... +...+|+|+|++.. +..+. ++|+|++||++++.++.++++.|+++ ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~Gta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~-----~~~~t~~~~------- 146 (200)
T cd02508 81 LPPQQRKGGDWYRGTADAIYQN--LDYIERSDPEYVLILSGDHIYNMDYREMLDFHIES-----GADITVVYK------- 146 (200)
T ss_pred eCcccCCCCCcccCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEh-------
Confidence 3221 24568999999865 34453 34999999999999999999999874 355555432
Q ss_pred CcCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh-hhhcCcchhH
Q 007078 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQH 256 (619)
Q Consensus 178 ~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~-lf~dnfd~q~ 256 (619)
+++|+|+++++++. ++.... ..
T Consensus 147 -------------------------------------------------------~~~g~yi~~~~~~~~~l~~~~-~~- 169 (200)
T cd02508 147 -------------------------------------------------------ASMGIYIFSKDLLIELLEEDA-AD- 169 (200)
T ss_pred -------------------------------------------------------hcCEEEEEEHHHHHHHHHHHh-cc-
Confidence 46788888888874 443210 00
Q ss_pred HHHhhhhhhccccccCceEEEEEccccchhhc
Q 007078 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARI 288 (619)
Q Consensus 257 ~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V 288 (619)
...+++.++++..+...++++|.++ +||.+|
T Consensus 170 ~~~~~~~d~i~~l~~~~~v~~~~~~-g~w~di 200 (200)
T cd02508 170 GSHDFGKDIIPAMLKKLKIYAYEFN-GYWADI 200 (200)
T ss_pred CcchhHHHHHHHHhccCcEEEEEeC-CeEecC
Confidence 0123444444444444689999987 799875
No 51
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.90 E-value=7.4e-23 Score=205.30 Aligned_cols=223 Identities=20% Similarity=0.281 Sum_probs=155.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeC
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~ 110 (619)
|||||+|.|+||+|+|..+||||+|++|+|||+|+|+.|.++|+++|+|+++++.+.+.+|+.+. ..+.++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CCeEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999999998752 12444444
Q ss_pred C--CccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCce
Q 007078 111 H--NIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (619)
Q Consensus 111 ~--~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~ 188 (619)
+ ...|+++++... +.++.++||+++||++++. ++++.|.++ ++.+|+++.+.... ...++
T Consensus 74 ~~~~~~g~~~s~~~~--~~~~~~~~lv~~~D~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~----- 135 (229)
T cd02523 74 PDYAETNNIYSLYLA--RDFLDEDFLLLEGDVVFDP---SILERLLSS-----PADNAILVDKKTKE---WEDEY----- 135 (229)
T ss_pred cchhhhCcHHHHHHH--HHHcCCCEEEEeCCEecCH---HHHHHHHcC-----CCCCeEEEccCccc---ccccc-----
Confidence 3 357788887754 4555667999999999866 466777754 35677877763221 11122
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcc-h-hH-HHHhhhhhh
Q 007078 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-Y-QH-LRRHFVKGL 265 (619)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd-~-q~-~r~dfi~~v 265 (619)
.+..+. .++++.+.++|.... ...+..+|+|+++|+++..+.+... + +. ...+++.++
T Consensus 136 ~~~~~~-~~~v~~~~~k~~~~~------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 196 (229)
T cd02523 136 VKDLDD-AGVLLGIISKAKNLE------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDA 196 (229)
T ss_pred eeeecC-ccceEeecccCCCcc------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 222221 267888888764221 1345788999999999887654211 0 00 122444555
Q ss_pred ccccccCceEEEEEccccchhhccChhhHHHH
Q 007078 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 266 L~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
++..+...++.++.+..+||.+|+++++|..+
T Consensus 197 i~~l~~~~~~~v~~~~~~~w~dI~~~ed~~~a 228 (229)
T cd02523 197 LQRLISEEGVKVKDISDGFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHHhhcCeeEEEcCCCCEEEeCCHHHHHhh
Confidence 55443323344443333799999999999865
No 52
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.87 E-value=5.1e-21 Score=192.14 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=150.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCCh---HHHHHHHHccCCCCCCCceEEE
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS---KQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~---~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
+||||+|+|+||+|+|..+||||+|++|+|||+|+|+.|..+|+++++|+++... +.+..++.... .++.+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~----~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA----PNATVVE 76 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC----CCCEEEE
Confidence 4899999999999999999999999999999999999999999999999887421 22333333211 1345543
Q ss_pred EeCCCccCHHHHHHHHHhhcccC--CCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
. +....|+++++... +..+. ++|++++||++++.++.+++..|+... ...++++.... ..+++
T Consensus 77 ~-~~~~~g~~~~l~~a--~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~------~~~~~- 141 (231)
T cd04183 77 L-DGETLGAACTVLLA--ADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD-----LDGGVLTFFSS------HPRWS- 141 (231)
T ss_pred e-CCCCCcHHHHHHHH--HhhcCCCCCEEEEecceeeccCHHHHHHHhhccC-----CceEEEEEeCC------CCCeE-
Confidence 3 44677899888854 45563 459999999999999999999886542 33343333321 12444
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHH-HH-hhhhc----CcchhHHHH
Q 007078 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPE-VL-SLFTD----NFDYQHLRR 259 (619)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~-vl-~lf~d----nfd~q~~r~ 259 (619)
++.+|. .++|..+.+++.. +.+..+|+|+++++ ++ .++.+ ... .. ..
T Consensus 142 ---~v~~d~-~~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~-~~-~~ 194 (231)
T cd04183 142 ---YVKLDE-NGRVIETAEKEPI---------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDS-VN-GE 194 (231)
T ss_pred ---EEEECC-CCCEEEeEEcCCC---------------------CCccEeEEEEECcHHHHHHHHHHHHhhccc-cc-Cc
Confidence 667774 6788888876421 23567899999987 33 33322 110 00 11
Q ss_pred hhhhhhccccc-cCceEEEEEccccchhhccChhhH
Q 007078 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY 294 (619)
Q Consensus 260 dfi~~vL~~~~-~g~~I~~~~~~~~y~~~V~~~~sY 294 (619)
.++..+++..+ .|.+++++.+.+++|.+|+++++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 23344554443 466899999866899999999876
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.87 E-value=1.9e-21 Score=200.38 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=137.8
Q ss_pred eEEEEEeCCCCCCCCCCCC-CCCceeeeeCC-eehHHHHHHHHHHC-CCcEEEEEccC-ChHHHHHHHHccCCCCCCCce
Q 007078 29 LQAILLADSFTTKFRPITL-ERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~-~~PK~LLPi~n-~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~ 104 (619)
|++||||+|.|+||+|+|. .+||+|+|++| +|||+|+|+.|... ++++|+|++++ +.+.+++++.. + ...
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~--~----~~~ 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE--G----LPE 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh--c----CCC
Confidence 6899999999999999996 79999999999 99999999999998 59999999996 45677778765 1 124
Q ss_pred EEEEeCCCccCHHHHHHHHHhhcccC----CC-EEEEeCCeech--hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007078 105 VKTIESHNIISAGDALRLIYEQNVIH----GD-FVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~~~~~~i~----~d-fLlv~gD~i~~--~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~ 177 (619)
+.++.++..+|+++|+..... .+. ++ +|+++||++.. .+|.+++++|.+..+ +++++|+.+++..+
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~--~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~--~~~~vt~gi~p~~~--- 147 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAAL--YLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRP--- 147 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHH--HHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHH--cCCEEEEEeeecCC---
Confidence 566777888999999885432 222 23 88899999765 678888887776432 46889999887653
Q ss_pred CcCcccCCCceEEEEeCCC-C---eEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH
Q 007078 178 THQSRLGTDELFMAIDPNT-K---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (619)
Q Consensus 178 ~~~~r~~~~~~vv~~d~~~-~---rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl 245 (619)
.++|| ++..+... + +|..|.|||...+.. ..+.. ...+.++|||+++++++
T Consensus 148 --~t~yG----yI~~~~~~~~~~~~V~~f~EKP~~~~a~-----~~~~~------g~~~wNsGiyi~~~~~l 202 (274)
T cd02509 148 --ETGYG----YIEAGEKLGGGVYRVKRFVEKPDLETAK-----EYLES------GNYLWNSGIFLFRAKTF 202 (274)
T ss_pred --CCCeE----EEEeCCcCCCCceEEeEEEECcChHHHH-----HHhhc------CCeEEECceeeeeHHHH
Confidence 35777 77777432 2 899999998632110 01110 12356788888885443
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.81 E-value=4.4e-19 Score=195.68 Aligned_cols=236 Identities=14% Similarity=0.192 Sum_probs=160.5
Q ss_pred eEEEEEeCCCCCCCCCCCCC-CCceeeeeCC-eehHHHHHHHHHHCCCcEEEEEccCC-hHHHHHHHHccCCCCCCCce-
Q 007078 29 LQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT- 104 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~-~PK~LLPi~n-~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~- 104 (619)
|.|||||+|.|+||+|||.. +||+|+|++| +|||+|+|+.|...|+++++|+++.. ...+++.+... +++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~------~~~~ 74 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI------GKLA 74 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc------CCCc
Confidence 67999999999999999997 8999999977 89999999999999999999998853 34566666542 122
Q ss_pred EEEEeCCCccCHHHHHHHHHhhccc----C-CC-EEEEeCCeec-h-hhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007078 105 VKTIESHNIISAGDALRLIYEQNVI----H-GD-FVLISGDTVS-N-MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~~~~~~i----~-~d-fLlv~gD~i~-~-~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~ 176 (619)
..++.++..++||.|+.... .++ . ++ |||++||++. + .+|.++++++.+..+ +++++|+.+++..|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa--~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~--~~~lvtlgi~p~~p-- 148 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAA--LLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAA--EGKLVTFGIVPTHP-- 148 (468)
T ss_pred ceEEecccccCchHHHHHHH--HHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHh--cCCEEEEEecCCCC--
Confidence 34677788899999887532 222 2 34 8899999754 4 468999988765332 25788888876654
Q ss_pred CCcCcccCCCceEEEEeC-----CCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecC----------
Q 007078 177 ITHQSRLGTDELFMAIDP-----NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICS---------- 241 (619)
Q Consensus 177 ~~~~~r~~~~~~vv~~d~-----~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~ics---------- 241 (619)
.+.|| ++..++ ..++|..|.|||...+. ...+. -.+.|.++|||+++
T Consensus 149 ---~t~YG----yI~~~~~~~~~~~~~V~~f~EKP~~~~a-----~~~l~------~g~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 149 ---ETGYG----YIRRGEPLAGEDVYQVQRFVEKPDLATA-----QAYLE------SGDYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred ---CCCce----EEEeCCccCCCCceEEeEEEECCChHHH-----HHHHh------cCCeEEEeeEEEEEHHHHHHHHHH
Confidence 35787 777764 23689999999863211 01111 11236788999998
Q ss_pred --HHHHhhhhcCc---c------------hhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHH
Q 007078 242 --PEVLSLFTDNF---D------------YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 242 --p~vl~lf~dnf---d------------~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
|+++..+..-+ . |..+..-.+...+. .+..++++.... .+|.++++|.++..+
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavm--Ek~~~v~vv~~~-~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 211 HAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVM--EKTADAVVVPMD-AGWSDVGSWSALWEI 280 (468)
T ss_pred HCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeee--EcCCcEEEEeCC-CCccccCCHHHHHHh
Confidence 66655554211 0 00001111111111 245678887775 789999999998875
No 55
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.81 E-value=1.1e-18 Score=174.63 Aligned_cols=218 Identities=19% Similarity=0.275 Sum_probs=150.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeC
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~ 110 (619)
|||||+|+|+||++ ..||+|+|++|+|||+|+|+.|..+|+++|+|++++..+.+.+++.. +.+.++.+
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CCcEEEEC
Confidence 69999999999996 68999999999999999999999999999999999888899988865 23555666
Q ss_pred CCccCHHHHHHHHHhhcccC---CCEEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCC
Q 007078 111 HNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (619)
Q Consensus 111 ~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~ 185 (619)
....|++++++.. ...+. +.|+++.||. +...++..+++.|++. ++.+++.+.+.. ++.+++
T Consensus 70 ~~~~g~~~ai~~a--~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~-----~p~~~~- 136 (229)
T cd02540 70 EEQLGTGHAVKQA--LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA-----GADVTVLTAELE-----DPTGYG- 136 (229)
T ss_pred CCCCCCHHHHHHH--HHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCCcc-
Confidence 6678899998864 34454 3499999998 5678999999998764 244445444432 233555
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHH-hhhhcCcchhHHHHhhhhh
Q 007078 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVKG 264 (619)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl-~lf~dnfd~q~~r~dfi~~ 264 (619)
.+..|. +++|..+.++|...... + ...++.+|+|++++..+ .++........-..+++..
T Consensus 137 ---~~~~~~-~~~v~~~~ek~~~~~~~-----------~----~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 137 ---RIIRDG-NGKVLRIVEEKDATEEE-----------K----AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ---EEEEcC-CCCEEEEEECCCCChHH-----------H----hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 455553 57898999876421000 0 02457899999998754 4454311100001233444
Q ss_pred hccccc-cCceEEEEEccccch--hhccChh
Q 007078 265 LLLDDI-MGYKIFTHEIHSSYA--ARIDNYR 292 (619)
Q Consensus 265 vL~~~~-~g~~I~~~~~~~~y~--~~V~~~~ 292 (619)
+++..+ .|.+++++.+. +|| ..|+++.
T Consensus 198 ~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~ 227 (229)
T cd02540 198 IIALAVADGLKVAAVLAD-DEEEVLGVNDRV 227 (229)
T ss_pred HHHHHHHCCCEEEEEEcC-CcceEecCCChH
Confidence 444433 46789999986 554 4565553
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.79 E-value=1.6e-17 Score=168.38 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
++-+||||+|.++||. ||+|+|++|+|||+|+|+.|.++|+++|+|++++ +.+.+++... ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~------~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF------GGEVVM 67 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc------CCEEEE
Confidence 5789999999999994 6999999999999999999999999999988753 6677777541 345555
Q ss_pred EeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccC
Q 007078 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~ 184 (619)
..+....|++.+...+........+ ||++.||+ +....+..+++.|+.+. ....++++....+........++
T Consensus 68 ~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T PRK05450 68 TSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE----ADMATLAVPIHDAEEAFNPNVVK 143 (245)
T ss_pred CCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC----CCeEeeeeecCCHHHhcCcCCCE
Confidence 4445556777665543322222345 78899998 55678999999887531 23333443332211000111222
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCc--chhHH-HHhh
Q 007078 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHL-RRHF 261 (619)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnf--d~q~~-r~df 261 (619)
+ .+| ..+++++|.++|.+..... . ++-.-.+++..+|||+++++++..+.+.. .+... ..++
T Consensus 144 ----v-~~d-~~g~v~~~~e~~~~~~~~~------~---~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (245)
T PRK05450 144 ----V-VLD-ADGRALYFSRAPIPYGRDA------F---ADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQ 208 (245)
T ss_pred ----E-EeC-CCCcEEEecCCCCCCCCCc------c---ccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHH
Confidence 3 377 4789999999985321100 0 00001247789999999999998876421 11111 1122
Q ss_pred hhhhccccccCceEEEEEccccchhhccChhhHHHHhHh
Q 007078 262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300 (619)
Q Consensus 262 i~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~d 300 (619)
++ ++. .|.+++++..++.+|.+|+++++|..+++.
T Consensus 209 ~~-~~~---~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~ 243 (245)
T PRK05450 209 LR-ALE---NGYRIHVVVVEEAPSIGVDTPEDLERVRAL 243 (245)
T ss_pred HH-HHH---CCCceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 22 222 578999998874599999999999998764
No 57
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.78 E-value=1.6e-19 Score=183.00 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=133.9
Q ss_pred HHHHhhhhhhccccccCceEEEEEccccchhh-------ccChhhHHHHhHhhh---------hcccccccCCccccCCC
Q 007078 256 HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAAR-------IDNYRSYDIVSKDII---------QRWTYPYVPDVKFCGNR 319 (619)
Q Consensus 256 ~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~-------V~~~~sY~~~~~dil---------~r~~~p~~p~~~~~~~~ 319 (619)
-+..+|+.++| .++++++++.+.++ .|+.+ +.+|+.|..+++|++ .+|++|++|+..|...+
T Consensus 35 ~l~~~~~~~~L-~~~l~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~pll~~~gf~a~~ 112 (273)
T PRK11132 35 LLKHENLGSAL-SYMLANKLASPIMP-AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQ 112 (273)
T ss_pred ccCCccHHHHH-HHHHHHHhccccCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEEEEECCChHHHH
Confidence 35678999999 77899999999997 88888 999999999999999 99999999987665544
Q ss_pred cceeee---------cceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECC
Q 007078 320 ATKLER---------RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIED 390 (619)
Q Consensus 320 ~~~~~~---------~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~ 390 (619)
.|++.+ ..+|+...+.+..++.|++.+.||+++.|+.++ ..+||++|.||++|.| +.+|+||.
T Consensus 113 ~yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~---givIG~~a~IGdnv~I-----~~~VtiGg 184 (273)
T PRK11132 113 AYRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHAT---GIVIGETAVIENDVSI-----LQSVTLGG 184 (273)
T ss_pred HHHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCC---CeEECCCCEECCCCEE-----cCCcEEec
Confidence 444443 356666667777777777777777777777654 3488888888887764 56666663
Q ss_pred C---cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 391 G---CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 391 ~---~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
. +...+++||++|+||+||+|..|++||++|+||+|++ ||+++++...|
T Consensus 185 ~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~P 240 (273)
T PRK11132 185 TGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP 240 (273)
T ss_pred CcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecC
Confidence 2 3345678899999999999998888888888888887 56666666544
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.3e-17 Score=162.34 Aligned_cols=222 Identities=19% Similarity=0.305 Sum_probs=145.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEc-cCChHHHHHHHHccCCCCCCCceE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFC-CAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~-~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
+.|+|||||+|+|+||.| ++||||+.++|+|||+|+|++|+++|+++++||| ++..+.++.++.+.. +..
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~------~~~ 72 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP------FNA 72 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC------cce
Confidence 579999999999999999 9999999999999999999999999999999999 888999999998743 466
Q ss_pred EEEeCCCc--cCHHHHHHHHHhhcccCCCEEEEeCCeechhhHH-HHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcc
Q 007078 106 KTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLT-QALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (619)
Q Consensus 106 ~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~-~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (619)
+++.++.. ..++-.|. .++..+.++|++++||+|+...+- .++++- .++ +++...+ |
T Consensus 73 ~iv~N~~y~ktN~~~Sl~--~akd~~~~~fii~~sD~vye~~~~e~l~~a~------~~~----li~d~~~--------~ 132 (239)
T COG1213 73 KIVINSDYEKTNTGYSLL--LAKDYMDGRFILVMSDHVYEPSILERLLEAP------GEG----LIVDRRP--------R 132 (239)
T ss_pred EEEeCCCcccCCceeEEe--eehhhhcCcEEEEeCCEeecHHHHHHHHhCc------CCc----EEEeccc--------c
Confidence 66665443 33455544 456677888999999999877553 333321 111 2222211 2
Q ss_pred cCC-CceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc----CcchhHH
Q 007078 183 LGT-DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD----NFDYQHL 257 (619)
Q Consensus 183 ~~~-~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d----nfd~q~~ 257 (619)
+.. ++.....+ +.+++...-.+-. -++-.++||.+++++++..+.+ +-.|+.
T Consensus 133 ~~~~~ea~kv~~-e~G~i~~igK~l~---------------------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~- 189 (239)
T COG1213 133 YVGVEEATKVKD-EGGRIVEIGKDLT---------------------EYDGEDIGIFILSDSIFEDTYELLVERSEYDY- 189 (239)
T ss_pred ccccCceeEEEe-cCCEEehhcCCcc---------------------cccceeeeeEEechHHHHHHHHHHhhhhhHHH-
Confidence 221 22233333 3677655544321 2455788999999986654432 211111
Q ss_pred HHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhhhhcc
Q 007078 258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW 305 (619)
Q Consensus 258 r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~dil~r~ 305 (619)
+.+++... ...+.+-....+.+|..|++++.+..+-+.+...|
T Consensus 190 -~~~~~~~~----~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 190 -REVEKEAG----LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred -HHHHHHhC----CceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 11222111 11111111122469999999999999988876654
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.73 E-value=3.7e-16 Score=157.72 Aligned_cols=227 Identities=16% Similarity=0.147 Sum_probs=150.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
+.|||||+|.++||. ||+|+|++|+|||+|+|+.|.++ |+++|+|++++ +.+.+++.. + ++.+.+
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--~----~~~~~~ 67 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--F----GGKVVM 67 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--c----CCEEEE
Confidence 679999999999996 69999999999999999999999 99999998764 678888764 1 244544
Q ss_pred EeCCCccCHHHHHHHHHhhcccCC--C-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcc
Q 007078 108 IESHNIISAGDALRLIYEQNVIHG--D-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~--d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (619)
.......|++++...+. .+.. + ||++.||+ +....|..+++.|+.. .++.+|+++.+.... . ...+
T Consensus 68 ~~~~~~~gt~~~~~~~~---~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~ 138 (239)
T cd02517 68 TSPDHPSGTDRIAEVAE---KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD----PGVDMATLATPISDE-E-ELFN 138 (239)
T ss_pred cCcccCchhHHHHHHHH---hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----CCCCEEEEEEEcCCH-H-HccC
Confidence 33344567776554332 2332 5 89999996 6677999999988653 135666666554311 0 0002
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcC--cchhHHHHh
Q 007078 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRRH 260 (619)
Q Consensus 183 ~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dn--fd~q~~r~d 260 (619)
++ ..-+.+|. +++|+.|.++|.+..+.. . .....+..+|||+++++++..+... +.+.. .+
T Consensus 139 ~~--~~~v~~~~-~~~v~~~~~~~~~~~~~~-----------~-~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~--~~ 201 (239)
T cd02517 139 PN--VVKVVLDK-DGYALYFSRSPIPYPRDS-----------S-EDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQ--IE 201 (239)
T ss_pred CC--CCEEEECC-CCCEEEecCCCCCCCCCC-----------C-CCCceeEEEEEEEECHHHHHHHHhCCCchhhh--hh
Confidence 22 11245553 578988887653211100 0 0013467899999999999877542 22211 11
Q ss_pred hhh--hhccccccCceEEEEEccccchhhccChhhHHHHhH
Q 007078 261 FVK--GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (619)
Q Consensus 261 fi~--~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~ 299 (619)
.+. .++. .|.+++++... ++|.+|+++++|..+.+
T Consensus 202 ~~~~~~~~~---~g~~v~~~~~~-~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 202 SLEQLRALE---NGYKIKVVETD-HESIGVDTPEDLERVEA 238 (239)
T ss_pred hHHHHHHHH---CCCceEEEEeC-CCCCCCCCHHHHHHHHh
Confidence 111 1222 57789999876 67999999999998753
No 60
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.70 E-value=2.5e-16 Score=157.75 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=120.5
Q ss_pred EEEccccchhhccChhhHHHHhHhhhhcccccccCCccccCCCcceeeecceEEcCCcEECCCCEEcCCcEECCCCEECC
Q 007078 277 THEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS 356 (619)
Q Consensus 277 ~~~~~~~y~~~V~~~~sY~~~~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~ 356 (619)
++... +||.++ ++|.++++++|..+.. ..+.... .....-+++.++.|++++.|.+++.||.++.|++
T Consensus 42 ~~~~~-gyW~Di---~~yl~an~diL~~~~~-~~~~~~~-------~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~ 109 (231)
T TIGR03532 42 SGVLF-GEWEDI---EPFIEANKDKIKDYRI-ENDRRNS-------AIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMM 109 (231)
T ss_pred cEEEE-EeHHHH---HHHHHHhHhhhcceEE-eeccccc-------ccccccccccccEECCCCEEeCCeEECCCCEEec
Confidence 55554 899999 9999999999987641 1110000 0111224678889999999999999999999999
Q ss_pred CcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007078 357 NSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (619)
Q Consensus 357 ~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (619)
++.|. +++||++|.|++++.|. +++||++|+||.++.|.+ ++|+++|+||.+++|.+|++|+++++|++
T Consensus 110 ~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Iga 189 (231)
T TIGR03532 110 GAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAA 189 (231)
T ss_pred CcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECC
Confidence 99995 89999999999999995 899999999999999974 78888888888888888888888888888
Q ss_pred CCEE----CCCCEEcCCc
Q 007078 426 RFVV----PAHSKVSLLQ 439 (619)
Q Consensus 426 ~~~i----~~~~~v~~~~ 439 (619)
+++| ++++++...|
T Consensus 190 gsvV~~di~~~~vv~G~P 207 (231)
T TIGR03532 190 GAIVTEDVPPNTVVAGVP 207 (231)
T ss_pred CCEEccccCCCcEEEecC
Confidence 8874 6666776654
No 61
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.69 E-value=2.4e-15 Score=151.78 Aligned_cols=228 Identities=16% Similarity=0.175 Sum_probs=147.8
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
.+-|||||+|.++||. +|+|+|++|+|||+|+++.|.++ ++++|+|++++ +.+++++... ++++.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~------~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF------GGKVV 67 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc------CCeEE
Confidence 4789999999999994 59999999999999999999999 89999998864 6788888652 24454
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCccc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (619)
+..+....|++..... ...+..+ |+++.||. +...++..+++.|+.. +...+++++.+.... . ....+
T Consensus 68 ~~~~~~~~g~~~~~~a---~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~p 138 (238)
T PRK13368 68 MTSDDHLSGTDRLAEV---MLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDD----PSINVATLCAPISTE-E-EFESP 138 (238)
T ss_pred ecCccCCCccHHHHHH---HHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC----CCccceeEEEEcCCH-H-HhcCc
Confidence 4333444455543222 2223434 99999995 7788999999988753 233555555443210 0 00001
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcC--cchhHHHH-h
Q 007078 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRR-H 260 (619)
Q Consensus 184 ~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dn--fd~q~~r~-d 260 (619)
+ ...+.++ ..+++..+.++|.+..+. .. ....+..+|||+++++++..+... ++.+.+.. +
T Consensus 139 ~--~~~~~~~-~~g~v~~~~~~~~~~~~~------------~~-~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~ 202 (238)
T PRK13368 139 N--VVKVVVD-KNGDALYFSRSPIPSRRD------------GE-SARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLE 202 (238)
T ss_pred C--CCEEEEC-CCCCEEEeeCCCCCCCCC------------CC-CCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHH
Confidence 1 1113455 358898888754211000 00 012257889999999999887542 22111221 3
Q ss_pred hhhhhccccccCceEEEEEccccchhhccChhhHHHHhH
Q 007078 261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (619)
Q Consensus 261 fi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~ 299 (619)
++ .++. .|.+++++.. +++|.+|+++.+|..+..
T Consensus 203 ~~-~~~~---~g~~v~~~~~-~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 203 QL-RALE---HGEKIRMVEV-AATSIGVDTPEDLERVRA 236 (238)
T ss_pred HH-HHHH---CCCceEEEEe-CCCCCCCCCHHHHHHHHH
Confidence 33 3332 5778999985 489999999999998754
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=164.83 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=119.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCC-CCceeeeeCC-eehHHHHHHHHHHCCCcEEEEEccC-ChHHHHHHHHccCCCCCCCc
Q 007078 27 QPLQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF 103 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~-~PK~LLPi~n-~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~ 103 (619)
+.|.+||||+|+|+||||+|.. .||+|+|+.| +|||+++++.+...++.+.+|+|+. +.+.+++.+....- .
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~-----~ 78 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK-----L 78 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC-----c
Confidence 4589999999999999999998 7999999965 7999999999999999888888874 46777777755210 1
Q ss_pred eEEEEeCCCccCHHHHHHHHHh--h-cccC-CC-EEEEeCCee-chh-hHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007078 104 TVKTIESHNIISAGDALRLIYE--Q-NVIH-GD-FVLISGDTV-SNM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (619)
Q Consensus 104 ~I~~i~~~~~~~~gdalr~~~~--~-~~i~-~d-fLlv~gD~i-~~~-~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~ 176 (619)
...++.++..+.|+.|+..... + ..-. +. ++++++|++ .+. .|.+.+++-.+-.+ .+.++|+..++..|.
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~--~~~lvt~GI~Pt~Pe- 155 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE--AGKLVTFGIVPDLPE- 155 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh--cCCEEEEecCCCCCC-
Confidence 2356777888888887664321 1 1111 22 788999995 443 46777766654332 268999999988765
Q ss_pred CCcCcccCCCceEEEEeCC--------CCeEEEeeecCCC
Q 007078 177 ITHQSRLGTDELFMAIDPN--------TKQLLYYEDKADH 208 (619)
Q Consensus 177 ~~~~~r~~~~~~vv~~d~~--------~~rvl~~~ekp~~ 208 (619)
+.|| ++..... -.+|..|.|||+.
T Consensus 156 ----TgyG----YI~~g~~~~~~~~~~~~~V~~F~EKPd~ 187 (478)
T PRK15460 156 ----TGYG----YIRRGEVSAGEQDTVAFEVAQFVEKPNL 187 (478)
T ss_pred ----CCCC----eEEeCCccccccccCceEeeEEEeCCCH
Confidence 4566 4443321 2479999999973
No 63
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.64 E-value=5.4e-15 Score=140.67 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=102.2
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD 401 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~ 401 (619)
...+.+|+++++.|++++.|.++++||++|.|++++.|. +++||++|.|+++++|.+++|++++.|+.++.+.+++|++
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence 445678999999999999998899999999999999996 7999999999999999999999999999999999999999
Q ss_pred CcEECCCCEECC------------------------CCEECCCcEECCCCEECCCCEEcCCccc
Q 007078 402 GVIMKAGAVLKP------------------------GVVLSFKVVIGERFVVPAHSKVSLLQQP 441 (619)
Q Consensus 402 ~v~Ig~~~~I~~------------------------g~vIg~~v~Ig~~~~i~~~~~v~~~~~~ 441 (619)
++.|++++.+.. +++|++++.||.+++|.++++|+.....
T Consensus 93 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i 156 (163)
T cd05636 93 NVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWV 156 (163)
T ss_pred CCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEE
Confidence 999999988843 5788888888888888888888765533
No 64
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.60 E-value=1.7e-14 Score=136.07 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=99.0
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEEC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siIg 400 (619)
++.++.+++++.|.+++.||++|.|+++|+|. +++||++|.|+++|+| .+++|++++.|+.++.+.+++||
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig 82 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIG 82 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEEC
Confidence 46678888888888899999999999999996 4899999999999999 56999999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
++++||.++.|.++++|+++++|+++++|.+++.|+...
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~ 121 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRS 121 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCC
Confidence 999999999999999999999999999888877776543
No 65
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=7e-15 Score=148.99 Aligned_cols=246 Identities=14% Similarity=0.185 Sum_probs=158.3
Q ss_pred CeEEEEEeCCCCCCCCCCC-CCCCceeeeeCC-eehHHHHHHHHHH-CCCcEEEEEccC-ChHHHHHHHHccCCCCCCCc
Q 007078 28 PLQAILLADSFTTKFRPIT-LERPKVLLPLVN-VPMINYTLAWLEA-AGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF 103 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT-~~~PK~LLPi~n-~PlI~y~Le~L~~-~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~ 103 (619)
.|.+||||+|.|+|||||+ ...||++|++.+ +.|++.|++.++. .+.++++|+|+. |...+++.+....-. ..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~~ 77 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---NA 77 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---cc
Confidence 3789999999999999997 569999999965 9999999999999 689999999995 567777777652110 01
Q ss_pred eEEEEeCCCccCHHHHHHHHHhhcccC--CC--EEEEeCCeechh--hHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007078 104 TVKTIESHNIISAGDALRLIYEQNVIH--GD--FVLISGDTVSNM--LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (619)
Q Consensus 104 ~I~~i~~~~~~~~gdalr~~~~~~~i~--~d--fLlv~gD~i~~~--~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~ 177 (619)
.- ++.++..+.|+.|+.... ....+ +| ++|+++|++..- .|.+.++...+-. .++.++|+...+..|.
T Consensus 78 ~~-illEP~gRnTApAIA~aa-~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A--~~g~lVTfGI~Pt~Pe-- 151 (333)
T COG0836 78 AG-IILEPEGRNTAPAIALAA-LSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAA--EEGGIVTFGIPPTRPE-- 151 (333)
T ss_pred cc-eEeccCCCCcHHHHHHHH-HHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHH--HcCCEEEEecCCCCCc--
Confidence 12 666778888888876542 22222 24 889999995433 4666666554433 3468999999988764
Q ss_pred CcCcccCCCceEEEEeC-----CCCeEEEeeecCCCC-------CcceEeehhhhhcCCceEEEeccccceeEecCHHHH
Q 007078 178 THQSRLGTDELFMAIDP-----NTKQLLYYEDKADHS-------KGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (619)
Q Consensus 178 ~~~~r~~~~~~vv~~d~-----~~~rvl~~~ekp~~~-------~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl 245 (619)
+-|| ++..-. ...+|-.|.|||+.. .|.|.++..+|.. |...+--...-+.|+++
T Consensus 152 ---TGYG----YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~F------ra~~~l~e~~~~~P~i~ 218 (333)
T COG0836 152 ---TGYG----YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLF------RASVFLEELKKHQPDIY 218 (333)
T ss_pred ---cCcc----eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEE------EHHHHHHHHHhhCcHHH
Confidence 3444 332211 357789999999722 4556666655442 22222222334456664
Q ss_pred hhhhcCc------c--------hhHHHHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHh
Q 007078 246 SLFTDNF------D--------YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (619)
Q Consensus 246 ~lf~dnf------d--------~q~~r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~ 298 (619)
.-..+-+ + |+..-...+.+.+.+ +..++.+.... -.|.++++|.+...+.
T Consensus 219 ~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiME--kt~~~aVVp~~-f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 219 CAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIME--KTSKAAVVPAD-FGWSDLGSWHALWEVL 282 (333)
T ss_pred HHHHHHHhcccccchhcccHHHHhhCcccchhHHHHh--hhcceEEEecC-CCcccccCHHHHHHHh
Confidence 4332211 1 222222223333332 45677777765 7899999999877543
No 66
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.60 E-value=1.1e-14 Score=141.77 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=100.4
Q ss_pred EEcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEE
Q 007078 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIV 399 (619)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siI 399 (619)
.+++++.|++++.|.+++.||++|.|+++|+|+ .++||++|.||++|+|+ +++|+++++|++++.|.+|+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI 89 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV 89 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence 468889999999999999999999999999996 57999999999999994 699999999999999999999
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
++++.||.+++|..+++||++++|+++++|.+++.|...
T Consensus 90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~ 128 (192)
T TIGR02287 90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQ 128 (192)
T ss_pred CCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCC
Confidence 999999999999999999999999999988888777644
No 67
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=2.6e-14 Score=135.97 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=92.4
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEEC
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg 400 (619)
.....+++|+++++.|+++|.|.+++.||++|.|++++.|.+|+||++|.|+.++++.+++|++++.|++++.+.+....
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~ 108 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFD 108 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999998542211
Q ss_pred -------------------CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007078 401 -------------------DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (619)
Q Consensus 401 -------------------~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v 435 (619)
.++.|+++++|+.+++|.++++||++++|+++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 109 DKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 24555555666655666666666666666666654
No 68
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=2.5e-14 Score=136.20 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=96.7
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEec-----------eEECCCCEECCCcEE
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----------SYIWDNVIIEDGCEL 394 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~~-----------s~I~~~v~Ig~~~~I 394 (619)
+++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+ +.|++++.|..++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 57788899999999999999999999999994 579999999999999965 468888888889999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.+++||++|+||.+|+|.+|++||++++||++++|.+++.++...
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~ 126 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENT 126 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCe
Confidence 999999999999999999999999999999999888887776543
No 69
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.57 E-value=3.1e-14 Score=139.01 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=97.4
Q ss_pred EEcCCcEECCCCEEcCCcEECCCCEECCCcEEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEE
Q 007078 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIV 399 (619)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siI 399 (619)
.+++++.|++++.|.+++.||++|.|+++|+|+. ++||.+|.||++|+|+ +++|+++++||.++.|.+++|
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI 91 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI 91 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence 4678888999999888999999999999999964 5899999999999996 478999999999999999999
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007078 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~ 436 (619)
|++|+||.+++|.+|++||++++|++|++|.+++.+.
T Consensus 92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip 128 (196)
T PRK13627 92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGE 128 (196)
T ss_pred CCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcC
Confidence 9999999999999999999999999999888776553
No 70
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.56 E-value=3.3e-14 Score=133.44 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=100.4
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEEC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siIg 400 (619)
+++.+.|++++.|-+++.||+++.|.++++|+ +..||++|.|-++|+|+ .+.|+++|+||+++.|.+|.|+
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig 93 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIG 93 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEEC
Confidence 56678888888888999999999999999995 78999999999999997 4799999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
++|.||-|++|.+||.||++|.||+|++|+++.+++..
T Consensus 94 ~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~ 131 (176)
T COG0663 94 DNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGG 131 (176)
T ss_pred CCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCC
Confidence 99999999999999999999999999999988877653
No 71
>PLN02472 uncharacterized protein
Probab=99.55 E-value=7.7e-14 Score=140.50 Aligned_cols=110 Identities=12% Similarity=0.158 Sum_probs=100.7
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEE
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL 394 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I 394 (619)
++.++.|.+++.|.+++.||+++.|+++++|+ ..+||++|.|+++|+|+ +++||++|+||++|.|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L 141 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL 141 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence 67788899999999999999999999999985 48999999999999995 5899999999999999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.+|+|+++|.||.+|+|.+|++|+++++|+++++|+++..+....
T Consensus 142 ~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~ 186 (246)
T PLN02472 142 RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGE 186 (246)
T ss_pred CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCC
Confidence 999999999999999999999999999999999999888887543
No 72
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.55 E-value=6.5e-14 Score=142.93 Aligned_cols=122 Identities=17% Similarity=0.113 Sum_probs=87.7
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEe--------c
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------G 379 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~--------~ 379 (619)
+....++++++.++.|+++|.|++++.||++|.|+++++|. +++||++|.|+++|+|. .
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 102 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV 102 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence 33445667777777777777777777788888888777774 57788888888888875 2
Q ss_pred eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCcccC
Q 007078 380 SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (619)
Q Consensus 380 s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~~ 442 (619)
++||+++.|+.+++| .+++||++++|+.++.|..+++||++|.|+.++.|.++++|+.....+
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig 166 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVG 166 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEEC
Confidence 677777777777777 567777777777777777777777777777766666666666554333
No 73
>PLN02296 carbonate dehydratase
Probab=99.55 E-value=6.7e-14 Score=142.75 Aligned_cols=110 Identities=24% Similarity=0.268 Sum_probs=98.4
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEE
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL 394 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I 394 (619)
++.++.|++++.|.+++.||++|.|+++|+|. +++||++|.|+++|+|. +++|+++|+||.+|.|
T Consensus 55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 67778888888888899999999999999996 35899999999999995 5899999999999999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.+++|+++|+||.+++|.+|++|+++++|++|++|+++++|+...
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 999999999999999999999999999999999988887776544
No 74
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.53 E-value=1.3e-13 Score=140.85 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=87.8
Q ss_pred eeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEe--------ce
Q 007078 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------GS 380 (619)
Q Consensus 322 ~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~--------~s 380 (619)
.+..+++.+++++.|+++|.|.+++.||++|.|+++++|+ +++||++|.|+++|+|. ++
T Consensus 23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~ 102 (254)
T TIGR01852 23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT 102 (254)
T ss_pred CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence 3445566777777777777777778888888888888885 57788888888888885 35
Q ss_pred EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCccc
Q 007078 381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQP 441 (619)
Q Consensus 381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~ 441 (619)
+||+++.|+.++.| .+++||++++|+.++.|..+++||++|.||.++.|.++++|+....+
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~I 164 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMI 164 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEE
Confidence 77777777777777 56777888887777777777777777777777776666666654433
No 75
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.53 E-value=1.5e-13 Score=140.25 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=97.4
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (619)
...+.+++++++.|++++.|++++.||++|.|+++++|. +++||++|.|+++++|. ++.|++++.|
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 86 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTI 86 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEE
Confidence 445667888999999999999999999999999999996 89999999999999996 6889999999
Q ss_pred CCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCcccC
Q 007078 389 EDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (619)
Q Consensus 389 g~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~~ 442 (619)
+++|+|.. ++||+++.|+++++|+.+|+||++|.|++++.+..+++|+...+.+
T Consensus 87 g~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig 148 (254)
T cd03351 87 REFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIG 148 (254)
T ss_pred CCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEEC
Confidence 99999963 7788888888888887777777777776665555555555444333
No 76
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.53 E-value=1.9e-13 Score=128.82 Aligned_cols=110 Identities=25% Similarity=0.199 Sum_probs=98.4
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEEC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----svIG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg 400 (619)
+++++.|++++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++||+++.|+.++.+.+++||
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 82 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVG 82 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEEC
Confidence 567788888888989999999999999999975 59999999999999975 899999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
++++|+.++.|..+++|+++++|++++.+.++..++...
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~ 121 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYS 121 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCC
Confidence 999999999999999999999999998888777776543
No 77
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.52 E-value=1.9e-13 Score=134.53 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=85.9
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEece------------
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV------------ 397 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s------------ 397 (619)
+++++.|+++|.|. ++.||+++.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|...
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~ 83 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF 83 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence 56788899999994 68999999999999999999999999999999999999999999999988531
Q ss_pred --------------------EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 398 --------------------IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 398 --------------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
....++.||++|+|+.+++|.++++||++++|+++++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~ 143 (204)
T TIGR03308 84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTK 143 (204)
T ss_pred ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 0234666667777776677776777777777777666654
No 78
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.51 E-value=4.1e-13 Score=131.28 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=57.6
Q ss_pred eecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCC
Q 007078 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDG 402 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~ 402 (619)
..+.+++++++.|+++|.|++++.||++|.|++++.|.++.||++|.|+++++|.+++|++++.|++++.|. +++|+++
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~ 91 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG 91 (193)
T ss_pred EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence 345677888888888888887888888888888888877788888888877777777777766666666664 3444433
Q ss_pred c
Q 007078 403 V 403 (619)
Q Consensus 403 v 403 (619)
+
T Consensus 92 ~ 92 (193)
T cd03353 92 V 92 (193)
T ss_pred C
Confidence 3
No 79
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.50 E-value=3.5e-13 Score=126.84 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=97.7
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe----ceEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEEC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg 400 (619)
+++++.|+++|.|.+++.||+++.|+++++|. +++||++|.|+++|+|.. ++|++++.|+.+|+|.+++|+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 45678888888888889999999999999886 369999999999999986 599999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
++++|+.++.|..+++|+++|.|+.+++|.+++.+....
T Consensus 82 ~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~ 120 (153)
T cd04645 82 DNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGS 120 (153)
T ss_pred CCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCC
Confidence 999999999999899999999999988888877776543
No 80
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.50 E-value=4.3e-13 Score=136.90 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=94.3
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (619)
+..+.+++++++.|++++.|++++.||+++.|+++|.|. +++||++|.|+++++|. +++||+++.|
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 85 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI 85 (254)
T ss_pred EeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence 445678888999999999999999999999999999995 89999999999999996 5889999999
Q ss_pred CCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 389 g~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
+++|+|. .++||+++.|+.++.|+.+|+||++|.|++++.+..+++|+...
T Consensus 86 ~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~ 144 (254)
T TIGR01852 86 REFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYA 144 (254)
T ss_pred CCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCc
Confidence 9999996 45778887777777776667777666666665555555554443
No 81
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.49 E-value=2.9e-13 Score=138.66 Aligned_cols=97 Identities=25% Similarity=0.241 Sum_probs=46.2
Q ss_pred cceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEECCC
Q 007078 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDG 391 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~ 391 (619)
+.+.+++++.|+++|.|++++.||++|.|+++++|. +++||++|.|+++++|. .++||+++.|+++
T Consensus 13 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~ 92 (262)
T PRK05289 13 PGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREF 92 (262)
T ss_pred CCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCC
Confidence 334444445555555555555555555555555553 45555555555555553 2445555555555
Q ss_pred cEEec--------eEECCCcEECCCCEECCCCEECCCcE
Q 007078 392 CELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVV 422 (619)
Q Consensus 392 ~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~ 422 (619)
|+|.. ++||+++.|+.++.|+.+|+||++|+
T Consensus 93 ~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~ 131 (262)
T PRK05289 93 VTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVI 131 (262)
T ss_pred eEEecccccCCCeeEECCceEECCCCEECCeEEECCCeE
Confidence 55532 23444444444444443333333333
No 82
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=7.8e-14 Score=130.56 Aligned_cols=106 Identities=22% Similarity=0.421 Sum_probs=82.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|.|||||||+|+||.|||...||+||.|.|+|||++.|++|.++|+.+|+||+|+..+++ +||++. ..|+.+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdK-------y~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDK-------YDVTLV 72 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHh-------cCeEEE
Confidence 679999999999999999999999999999999999999999999999999999988876 466662 357777
Q ss_pred eCCCccCHHHHHHHHHhhcccCCCEEEEeCCeech
Q 007078 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSN 143 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~ 143 (619)
..+....-........++++++ +-.++.+|....
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~-ntYiidsDnyl~ 106 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLN-NTYIIDSDNYLT 106 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhc-ccEEeccchHhh
Confidence 7665543333333334555554 445667887543
No 83
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=5.2e-13 Score=136.79 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=96.8
Q ss_pred cceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEec-------
Q 007078 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG------- 379 (619)
Q Consensus 320 ~~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~~------- 379 (619)
++.+..++++++.++.|.+++.|.+++.||++|.|+++++|+ .++||++|.|+++|+|..
T Consensus 25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~ 104 (262)
T PRK05289 25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG 104 (262)
T ss_pred CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence 355566788889999999999999999999999999999996 489999999999999974
Q ss_pred -eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCccc
Q 007078 380 -SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQP 441 (619)
Q Consensus 380 -s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~ 441 (619)
+.||+++.|+.++.|. +|+||++++|+.++.+..+++|+++|.||.++.|.++++|+....+
T Consensus 105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~I 168 (262)
T PRK05289 105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMV 168 (262)
T ss_pred eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEE
Confidence 4789999999888886 6788888887777777766777777666666666555555554433
No 84
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.46 E-value=1.8e-12 Score=136.40 Aligned_cols=71 Identities=28% Similarity=0.334 Sum_probs=38.9
Q ss_pred eecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 007078 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (619)
..+.+++++++.|++++.|++++.||++|.|+++++|+ +++||++|.|+++|+|. ++.|+++|.|+.+|+|
T Consensus 100 i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 100 VDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred eCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 33444555555555555555555555555555555552 55555555555555554 4555555555555555
No 85
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=1.7e-12 Score=123.33 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=68.9
Q ss_pred cEECCCCEEcC--CcEECCCCEECCCcEEec----eEECCCCEECCCcEEe-------------ceEECCCCEECCCcEE
Q 007078 334 IEQSRSAQVGS--FTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDGCEL 394 (619)
Q Consensus 334 ~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~----svIG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~~~I 394 (619)
..|++++.|.+ ++.||+++.|++++.|.. +.||++|.|+++|+|. ++.|++++.|++++.+
T Consensus 8 ~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i 87 (161)
T cd03359 8 NKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV 87 (161)
T ss_pred CeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEE
Confidence 33444444422 444555555555554431 4555555555555554 3468888888888888
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.+++|+++++|+++++|+++++|++++.|+++++|+++++++...
T Consensus 88 ~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~ 132 (161)
T cd03359 88 NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132 (161)
T ss_pred EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence 888888888888888888888888777777777777666665544
No 86
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=132.66 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=43.7
Q ss_pred cceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEECCCCEECCC
Q 007078 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDG 391 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~ 391 (619)
++..++.++.|+++|.|++++.||++|.|+++++|. ++.||++|.|++++.|. ...|+++++|+++
T Consensus 10 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~ 89 (255)
T PRK12461 10 PSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREG 89 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCc
Confidence 445555666666666666666666666666666664 66666666666666664 2456666666666
Q ss_pred cEEe
Q 007078 392 CELR 395 (619)
Q Consensus 392 ~~I~ 395 (619)
|+|.
T Consensus 90 vtI~ 93 (255)
T PRK12461 90 VTIH 93 (255)
T ss_pred cEEe
Confidence 6664
No 87
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.44 E-value=2.3e-12 Score=124.86 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|.|||||+|+|+||.+ .||+|+|++|+|||+|+++.|..+++++|+|+++++.+.++.|+.+.. . .+.
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~------~--~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY------K--DYK 68 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC------c--EEE
Confidence 6899999999999976 699999999999999999999999999999999988889999987521 1 112
Q ss_pred eCCCccCHHHHHHHHHhhcccCCCEEEEeCCe--echhhHHHHHHHHHHh
Q 007078 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
. ....|....+............|++++||+ +....+..+++.++..
T Consensus 69 ~-~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 69 N-ASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred e-cCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 1 333444444443322111235699999998 6677899999988764
No 88
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.44 E-value=1.6e-12 Score=136.87 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=89.8
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------------------
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------- 378 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------- 378 (619)
+.+...+++++.++.|.++|+|++++.||++|.|+++++|. +++||++|.|+++|+|.
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 34455667777778888888888888888888888888886 89999999999999994
Q ss_pred ceEECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 379 GSYIWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 379 ~s~I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.++|+++|.||.+++|. +++||+++.|+..+.|+++|.||+++.|++++.|..+++|+...
T Consensus 195 ~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~ 260 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNV 260 (324)
T ss_pred eEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCe
Confidence 37899999999999884 46677777777777776666666666666655555555554443
No 89
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.44 E-value=2e-12 Score=132.59 Aligned_cols=44 Identities=34% Similarity=0.423 Sum_probs=18.7
Q ss_pred cEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 007078 334 IEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI 377 (619)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I 377 (619)
+.|+++|+|++++.||.+|.|++++.|. ++.||++|.|+++++|
T Consensus 136 ~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 136 VVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred cEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3333333333333333444444444442 3455555555555544
No 90
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.43 E-value=1.5e-12 Score=133.40 Aligned_cols=93 Identities=30% Similarity=0.407 Sum_probs=48.8
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEE-------------
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL------------- 394 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I------------- 394 (619)
+++++.|+++++|+.++.||+++.|+++++|. ++.||++|.|.++|.|. ++.||.+|.|+.|+.|
T Consensus 114 i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g 193 (338)
T COG1044 114 IGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIG 193 (338)
T ss_pred cCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCC
Confidence 33344444444444444444444444444442 44455555555555543 2555555555555554
Q ss_pred -------eceEECCCcEECCCCEECCC----CEECCCcE
Q 007078 395 -------RHVIVCDGVIMKAGAVLKPG----VVLSFKVV 422 (619)
Q Consensus 395 -------~~siIg~~v~Ig~~~~I~~g----~vIg~~v~ 422 (619)
.+.+|+++|.||.+++|..+ ++|+++|+
T Consensus 194 ~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~k 232 (338)
T COG1044 194 WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232 (338)
T ss_pred ceEcceeceEEECCceEEcccceeccccccCceecCCcE
Confidence 23677888888887777776 55555544
No 91
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.43 E-value=1.6e-12 Score=130.96 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=75.9
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECCCcEE---------eceE
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL---------RHVI 398 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I---------~~si 398 (619)
...++++.+++.|.+++.||+++.|.++ .| .++.||.+|.|+.+++|. ++.|+++|.|+.++.| ..++
T Consensus 97 ~~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~Vi 175 (269)
T TIGR00965 97 KKAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI 175 (269)
T ss_pred ecCCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeE
Confidence 3445555555555555666666666544 23 245677777777766664 4667777777777766 3478
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
|+++|+||++|.|.+|++|+++++||+|++|+++++|...
T Consensus 176 IgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~ 215 (269)
T TIGR00965 176 IEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDR 215 (269)
T ss_pred ECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecc
Confidence 8888888888888888888888888888888888888753
No 92
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.42 E-value=3.2e-12 Score=118.35 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=47.3
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007078 364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (619)
Q Consensus 364 vIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~ 433 (619)
.||++|.|+.++.|. ++.|++++.|+.++.|. .++|+++++|+.+++|.++++|+++++|+++++|.+++
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCe
Confidence 444444444444442 34455555555555553 46777778888888887777777777777777777777
Q ss_pred EEcC
Q 007078 434 KVSL 437 (619)
Q Consensus 434 ~v~~ 437 (619)
+|+.
T Consensus 113 ~I~~ 116 (139)
T cd03350 113 PIYD 116 (139)
T ss_pred Eecc
Confidence 7754
No 93
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.41 E-value=3.8e-12 Score=135.54 Aligned_cols=88 Identities=28% Similarity=0.377 Sum_probs=52.0
Q ss_pred eecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe------
Q 007078 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR------ 395 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~------ 395 (619)
..+.++++.++.|++++.|++++.||++|.|+++++|. ++.||++|.|+++|+|. ++.|+++|+|+++|+|.
T Consensus 109 v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~ 188 (343)
T PRK00892 109 IDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGF 188 (343)
T ss_pred ECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCc
Confidence 33445555566666666666666666666666666663 56666666666666664 34466666666666663
Q ss_pred --------------ceEECCCcEECCCCEE
Q 007078 396 --------------HVIVCDGVIMKAGAVL 411 (619)
Q Consensus 396 --------------~siIg~~v~Ig~~~~I 411 (619)
.++||+++.||++++|
T Consensus 189 ~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I 218 (343)
T PRK00892 189 ANDRGGWVKIPQLGRVIIGDDVEIGANTTI 218 (343)
T ss_pred ccCCCceeeccccccEEECCCcEECCCcEE
Confidence 3556666666665555
No 94
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.41 E-value=2.2e-12 Score=115.81 Aligned_cols=100 Identities=25% Similarity=0.273 Sum_probs=85.2
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~ 408 (619)
+++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.+.++. +.+..+..++.+.+++||++++|+.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~-~~~~~~~~~~~~~~~~Ig~~~~Ig~~ 79 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDL-YPRSKIYRKWELKGTTVKRGASIGAN 79 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCC-CCccccccccccCCcEECCCcEECcC
Confidence 36778888889998899999999999999994 89999999999999998854 45555566888999999999999999
Q ss_pred CEECCCCEECCCcEECCCCEEC
Q 007078 409 AVLKPGVVLSFKVVIGERFVVP 430 (619)
Q Consensus 409 ~~I~~g~vIg~~v~Ig~~~~i~ 430 (619)
+.|.++++|++++.|++++++.
T Consensus 80 ~~v~~~~~ig~~~~i~~~~~v~ 101 (119)
T cd03358 80 ATILPGVTIGEYALVGAGAVVT 101 (119)
T ss_pred CEEeCCcEECCCCEEccCCEEe
Confidence 9998888888888888887754
No 95
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.40 E-value=2.1e-12 Score=108.09 Aligned_cols=79 Identities=34% Similarity=0.596 Sum_probs=66.1
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007078 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (619)
Q Consensus 348 Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (619)
||+++.|++++.|.++.||++|.|+++++|.+++|++++.|+.+|.|.+++|++++.|++++.|. +|+|+++++|++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-DCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-cCEECCCcEeCCCC
Confidence 67777888888888888899999998998888889999999999999888888888888888886 67777777776653
No 96
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.40 E-value=3.5e-12 Score=135.85 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=83.6
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe--------------------ceE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSY 381 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------~s~ 381 (619)
....+++++.++.|.++|+|++++.||++|.|+++++|. ++.||++|.|+++|+|. +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 344556677777777777777777888888888888885 56799999999999994 478
Q ss_pred ECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 382 IWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 382 I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
|+++|.||.+++|. +++||++++|+.++.|+++|.||+++.|++++.|..+++|+..
T Consensus 206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~ 267 (343)
T PRK00892 206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRY 267 (343)
T ss_pred ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCc
Confidence 99999999999884 4677777777777666666666666655555444444444433
No 97
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.40 E-value=2.2e-12 Score=107.01 Aligned_cols=78 Identities=54% Similarity=1.058 Sum_probs=69.0
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007078 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (619)
Q Consensus 348 Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (619)
||+++.|++++.|.+++||++|.|+++|+|.++.|++++.|+++++|.+++|++++.|+.++.|+++++|++++.||+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 677888888888888999999999999999999999999999999999999999999998888888888887777764
No 98
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.39 E-value=4e-12 Score=129.38 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=78.6
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEec-------e
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG-------S 380 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~~-------s 380 (619)
+....+++.+++++.|++++.|.+++.||.++.|++++.|+ .+.||++|.|+++|+|.. +
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t 102 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVT 102 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcE
Confidence 44555677788888888888888888889999999888885 478999999999999963 3
Q ss_pred EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
+|++++.+..++.| .+|.||++|+|+.++.|..+++||++|.||.++.|.++++|+...
T Consensus 103 ~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 103 RIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred EEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence 44444444444444 245555555555555555555555555555555555555544443
No 99
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.39 E-value=5.1e-12 Score=139.48 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=74.2
Q ss_pred eEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCC-----------EECCCcEEe
Q 007078 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNV-----------IIEDGCELR 395 (619)
Q Consensus 328 i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v-----------~Ig~~~~I~ 395 (619)
+.++.++.|++.+.| .++.||.+|.|++++.|. +++||++|.||++|.|.++.|++++ .||++|.|.
T Consensus 287 ~~ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig 365 (446)
T PRK14353 287 VTVASGAVIHAFSHL-EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIG 365 (446)
T ss_pred CEECCCCEECCCeEE-eccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEEC
Confidence 334444444444444 257788888888888886 7888888888888887766665543 345555553
Q ss_pred c-eEE-------CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 396 H-VIV-------CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 396 ~-siI-------g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
. +++ ..++.||++|+|+.|++|.++++||++++|+++++|...
T Consensus 366 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~ 416 (446)
T PRK14353 366 AGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED 416 (446)
T ss_pred CceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc
Confidence 2 222 235777888888888888888888888888888888753
No 100
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.39 E-value=8.9e-12 Score=119.09 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=51.6
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe-----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEec-eE
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH-VI 398 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~-si 398 (619)
+++++.|+++|.|.+++.||++|.|++++.|. ++.||++|.|++++.|. .++|++++.|+.++.|.+ ++
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 44555555555555555555555555555553 24555555555555553 345555555555555543 55
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
||++|+||.+|.|. +++||++|.||.++.
T Consensus 85 Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~ 113 (167)
T cd00710 85 IGDNCFIGFRSVVF-NAKVGDNCVIGHNAV 113 (167)
T ss_pred ECCCCEECCCCEEE-CCEECCCCEEcCCCE
Confidence 55555555555553 344444444444443
No 101
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.38 E-value=8.5e-12 Score=118.83 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred eeecceEEcCCcEECCCCEEc---CCcEECCCCEECCCcEEec-----------eEECCCCEECCCcEEeceEECCCCEE
Q 007078 323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD-----------SVIGEGCTIGSNVLIEGSYIWDNVII 388 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~-----------svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (619)
...+++++++++.|+++|.|. +.+.||++|.|++++.|.+ +.||++|.|+.+++|.++.|+++|.|
T Consensus 13 ~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~I 92 (164)
T cd04646 13 EIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVF 92 (164)
T ss_pred EEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEE
Confidence 345789999999999999995 5689999999999999964 35777777777777777777777766
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007078 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (619)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~ 431 (619)
|.+|+| +++++||++|+|+.|++|..++.|++++++..
T Consensus 93 g~~a~I-----~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g 130 (164)
T cd04646 93 ESKSFV-----GKNVIITDGCIIGAGCKLPSSEILPENTVIYG 130 (164)
T ss_pred eCCCEE-----CCCCEECCCCEEeCCeEECCCcEECCCeEEeC
Confidence 666555 44555555555554444444444444444433
No 102
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.38 E-value=3.3e-12 Score=106.17 Aligned_cols=77 Identities=31% Similarity=0.442 Sum_probs=65.0
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEEC
Q 007078 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG 424 (619)
Q Consensus 348 Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig 424 (619)
||+++.|++++.|.+++||++|.|+++++|.+++|+++++|+++|.|.+++|++++.|++++.|..+++|+++++|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 56777777777787788888999998999988999999999999999888888888888888888777777777765
No 103
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.37 E-value=1.6e-11 Score=115.94 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=78.2
Q ss_pred eeecceEEcCCcEECCCCEEcC---CcEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
...+++++++++.|+++|.|.+ ++.||++|.|+++|.| .+++||++|.|+.+++|.+++|++++.|+.++.|
T Consensus 14 ~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I 93 (155)
T cd04745 14 VLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVV 93 (155)
T ss_pred EEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEE
Confidence 3456889999999999999975 5899999999999999 5799999999999999998888888888877666
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
+++++|+++++|++ +++|.++..|++++++...
T Consensus 94 -----~~g~~Ig~~~~Ig~------~s~v~~~~~i~~~~~v~G~ 126 (155)
T cd04745 94 -----MDGAVIGEESIVGA------MAFVKAGTVIPPRSLIAGS 126 (155)
T ss_pred -----eCCCEECCCCEECC------CCEeCCCCEeCCCCEEecC
Confidence 33444444444444 4444444555555555443
No 104
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.37 E-value=1.6e-11 Score=117.25 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=96.2
Q ss_pred eecceEEcCCcEECCCCEEcC----CcEECCCCEECCCcEEe-----ceEECCCCEECCCcEEec-eEECCCCEECCCcE
Q 007078 324 ERRGMYRALEIEQSRSAQVGS----FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCE 393 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~----~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~ 393 (619)
..+++++++++.|+++|.|+. ++.||++|.|++++.|. .+.||++|.|++++.|.+ ++|+++|.||.+|.
T Consensus 17 i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~ 96 (167)
T cd00710 17 VIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSV 96 (167)
T ss_pred EEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCE
Confidence 346788999999999999875 47899999999999994 688999999999999985 99999999999999
Q ss_pred EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
|.++.||++++||.++.|. ++.|+++..|++++++..++....++
T Consensus 97 I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~~ 141 (167)
T cd00710 97 VFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADALP 141 (167)
T ss_pred EECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcccccc
Confidence 9998888888888888885 67777777777777766666554443
No 105
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.35 E-value=8.7e-12 Score=125.64 Aligned_cols=107 Identities=28% Similarity=0.344 Sum_probs=61.9
Q ss_pred eecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------ceEECCCCEECCCcE
Q 007078 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------GSYIWDNVIIEDGCE 393 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~~ 393 (619)
.+.++++++++.|.++ .|..++.||++|.|+.++.|+ ++.||++|.|+.++.|. +++|+++|.||.+|.
T Consensus 109 i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~ 187 (269)
T TIGR00965 109 VRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSE 187 (269)
T ss_pred ECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCE
Confidence 3445555555555543 344455666666666666664 56666666666666552 356666666666666
Q ss_pred EeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEc
Q 007078 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS 436 (619)
Q Consensus 394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~i~~~~~v~ 436 (619)
| .++++||++|+|+.|++|+.+++|++.. .||++++|.
T Consensus 188 I-----~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~ 232 (269)
T TIGR00965 188 I-----VEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV 232 (269)
T ss_pred E-----cCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence 5 5555555555555555555555554422 377787775
No 106
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.35 E-value=6.6e-12 Score=138.65 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=57.4
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECC
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~ 401 (619)
...+++++++++.|+++|.|. ++.||++|.|++++.|.+++||++|.||++++|. +++|+++|.|++++.+.+++||+
T Consensus 275 ~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~ 353 (451)
T TIGR01173 275 ILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK 353 (451)
T ss_pred EEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence 344567778888888877773 6788888888888888888888888888888886 57777777777766655444443
No 107
>PLN02917 CMP-KDO synthetase
Probab=99.34 E-value=1.6e-10 Score=120.27 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=143.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.+.|||+|+|.++||. +|+|+|++|+|||+|+++.+..++..+.+|+ +.+.+.+.+++.+. ++.+.
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~------~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF------GADVI 112 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc------CCEEE
Confidence 46889999999999994 5999999999999999999998865444333 35567888887641 23332
Q ss_pred EEeCCCccCHHHHHHHHHhhcccC--CC-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (619)
...+....|++.+... ...+. .| +|++.||. +....+..+++.|++. ......|+++.- .+. ...
T Consensus 113 ~~~~~~~~GT~~~~~a---~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~---~~~iv~t~~~~~-~~~---~~~ 182 (293)
T PLN02917 113 MTSESCRNGTERCNEA---LKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA---PDAVFSTAVTSL-KPE---DAS 182 (293)
T ss_pred eCCcccCCchHHHHHH---HHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc---CCceEEEEeeec-CHH---Hhc
Confidence 2223445677777432 22333 34 88899999 6677899999988542 112333333322 211 233
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhc--CcchhHHHH
Q 007078 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRR 259 (619)
Q Consensus 182 r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~d--nfd~q~~r~ 259 (619)
.|+ ...++.|. ++++++|...+-+..+. .+.+ . ..-.+...|||.+..+.|..|.. +-..| +.
T Consensus 183 ~yg--rv~vv~~~-~g~alyfsr~~Ipe~kd--~~~~------~--~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e--~e 247 (293)
T PLN02917 183 DPN--RVKCVVDN-QGYAIYFSRGLIPYNKS--GKVN------P--QFPYLLHLGIQSYDAKFLKIYPELPPTPLQ--LE 247 (293)
T ss_pred CCC--ceEEEECC-CCeEEEeecCcCCcCCC--cccc------c--ccceEEEEEEEEeCHHHHHHHHcCCCCccc--ch
Confidence 444 22234553 67877776543211111 0000 0 01135678999999999987753 11122 12
Q ss_pred hhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 260 HFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 260 dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
.++.++. -...|.+|.++... .-...|+|+..+..+.+-+
T Consensus 248 ~yLtdl~-~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~ 287 (293)
T PLN02917 248 EDLEQLK-VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALM 287 (293)
T ss_pred hccHHHH-HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHH
Confidence 3344443 12368889888775 4556899999988876644
No 108
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.34 E-value=8.1e-12 Score=126.99 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=49.9
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007078 364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (619)
Q Consensus 364 vIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~ 433 (619)
.||++|.|+.++.|. ++.|+++|+|+.++.|. .++|+++|+||.+|.|..|++||++++|+++++|.+++
T Consensus 134 ~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 134 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred EECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence 444444444444443 23455555555555543 47788888888888888888888888888888888888
Q ss_pred EEcC
Q 007078 434 KVSL 437 (619)
Q Consensus 434 ~v~~ 437 (619)
+|..
T Consensus 214 ~I~~ 217 (272)
T PRK11830 214 KIYD 217 (272)
T ss_pred EECc
Confidence 8864
No 109
>PLN02296 carbonate dehydratase
Probab=99.33 E-value=1.7e-11 Score=125.15 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=76.6
Q ss_pred eeecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEeceEECCCCEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (619)
...++++++.++.|.++|+|.+. +.||++|.|+++|+|. +++||++|.||++|+|++++|+++|.|
T Consensus 66 ~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~I 145 (269)
T PLN02296 66 SVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFV 145 (269)
T ss_pred EEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEE
Confidence 34568899999999999999865 4999999999999994 689999999999999988888888888
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
|.+++| .++++|+++|.|++|++|..+++|+++++
T Consensus 146 G~ga~I-----~~gv~Ig~~a~IgagSvV~~~~~I~~~~~ 180 (269)
T PLN02296 146 GMGATL-----LDGVVVEKHAMVAAGALVRQNTRIPSGEV 180 (269)
T ss_pred CCCcEE-----CCCeEECCCCEECCCCEEecCCEeCCCeE
Confidence 777666 55555555555555555444444444443
No 110
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.33 E-value=2.5e-11 Score=118.30 Aligned_cols=100 Identities=13% Similarity=0.240 Sum_probs=77.9
Q ss_pred eeecceEEcCCcEECCCCEEcC---CcEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
...++++++.++.|.++|.|.+ .++||++|.|+++|+| .+|+||++|.||++++|.+|+|++++.||.++.|
T Consensus 22 ~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I 101 (192)
T TIGR02287 22 VLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVV 101 (192)
T ss_pred EEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCccc
Confidence 4567899999999999999974 6899999999999999 4799999999999999999999999999888777
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (619)
.++++||+++.|+.|++|.+++.|.+++
T Consensus 102 -----~~g~~IG~~s~Vgags~V~~~~~ip~~~ 129 (192)
T TIGR02287 102 -----MDGAVIGENSIVAASAFVKAGAEMPAQY 129 (192)
T ss_pred -----CCCeEECCCCEEcCCCEECCCCEECCCe
Confidence 4455555555555544444444444443
No 111
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.32 E-value=4.5e-11 Score=112.67 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=78.8
Q ss_pred eeecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
...+++.+++++.|.++|.|.+. +.||++|.|+++|.|.. ++||++|.|+.++++.++.|++++.|+.++.+
T Consensus 14 ~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i 93 (154)
T cd04650 14 YVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAIL 93 (154)
T ss_pred EEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEE
Confidence 35578889999999999999875 79999999999999964 89999999999999999999999999999887
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
..++.|+++++|++++.+.++..|+++.+
T Consensus 94 -----~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 94 -----LNGAKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred -----eCCCEECCCCEECCCCEECCCcEeCCCCE
Confidence 33444555555554444444444444444
No 112
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.31 E-value=2.7e-11 Score=110.90 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=57.3
Q ss_pred cEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCC----cEECC
Q 007078 334 IEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDG----VIMKA 407 (619)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siIg~~----v~Ig~ 407 (619)
++|.+.+.|...+.||+++.|.+++.|. ++.||++|.|.. +| .++.|+++|.||++|.|. +.++.+ +.||+
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~ 78 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGK 78 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEE-EECCCCcccCEEECC
Confidence 4556666666666666666666666553 566666666652 33 245666667777777665 333334 44444
Q ss_pred CCEECCC----CEECCCcEECCCCEECCCCEEcC
Q 007078 408 GAVLKPG----VVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 408 ~~~I~~g----~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
+|+|+.| ..||++++||+|++|.++++|..
T Consensus 79 ~~~IG~ga~Igv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 79 RCLLGANSGIGISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred CCEECCCCEEeEEECCCCEECCCCEEeCCeEEEE
Confidence 4444444 45555555555555555555543
No 113
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.31 E-value=4.6e-11 Score=117.91 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=41.3
Q ss_pred cceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe--------------------ceEECC
Q 007078 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWD 384 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------~s~I~~ 384 (619)
.++.+++++.|+++|.|++++.||++|.|++++.|. +++||++|.|+++++|. .+.|++
T Consensus 18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 97 (205)
T cd03352 18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGD 97 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECC
Confidence 344455555555666666666666666666666664 36666666666666662 345666
Q ss_pred CCEECCCcEE
Q 007078 385 NVIIEDGCEL 394 (619)
Q Consensus 385 ~v~Ig~~~~I 394 (619)
++.|+.++.+
T Consensus 98 ~~~Ig~~~~i 107 (205)
T cd03352 98 DVEIGANTTI 107 (205)
T ss_pred CEEECCCCEE
Confidence 6666665555
No 114
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.31 E-value=9.3e-12 Score=120.99 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=98.2
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEECCCC
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNV 386 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-------------~s~I~~~v 386 (619)
.....+..-+++++.|++.|.|++++.||++|.|+++++|. .+.||++++|-+.+.|. ..+||+++
T Consensus 9 TAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n 88 (260)
T COG1043 9 TAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNN 88 (260)
T ss_pred ceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCC
Confidence 34455666788899999999999999999999999999994 89999999999999986 25799999
Q ss_pred EECCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 387 IIEDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 387 ~Ig~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
+|.++++|. -+.||+++.+.+++.|...|+||++|++.+++.++.++.|....
T Consensus 89 ~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~a 149 (260)
T COG1043 89 TIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYA 149 (260)
T ss_pred eEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEE
Confidence 999999994 37899999998888888888888888888877766666555443
No 115
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=3.6e-11 Score=114.24 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=76.8
Q ss_pred ecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEec-------------eEECCCCEECCCcEEeceEECCCCEE
Q 007078 325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIEGSYIWDNVII 388 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-------------svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (619)
..+++++.++.|+++|.|.++ +.||++|.|+++++|.. ++||++|.|++++++.+++|++++.|
T Consensus 19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 458999999999999999875 69999999999999963 47999999999999998888888888
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
+++++| +++++|+++++|++ +++|++++++++++++...
T Consensus 99 g~~~~I-----g~~~~I~~~~~i~~------g~~V~~~~~i~~~~vv~g~ 137 (161)
T cd03359 99 GKNCVI-----GRRCIIKDCVKILD------GTVVPPDTVIPPYSVVSGR 137 (161)
T ss_pred CCCCEE-----cCCCEECCCcEECC------CCEECCCCEeCCCCEEecc
Confidence 776655 55555555555544 4445555555555555543
No 116
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.31 E-value=2.7e-11 Score=114.38 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=85.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeC
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~ 110 (619)
|||||+|.|+||.- ||+|+|++|+|||+|+++.+..+|+++|+|++++ +++..++... .+.++..
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~--------~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY--------GIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT--------TSEEEE-
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc--------CceEEEe
Confidence 79999999999974 9999999999999999999999999999999987 5666666431 2444544
Q ss_pred C-CccCHHHHHHHHHhhcc-cCCCEEEEeCCe--echhhHHHHHHHHHHh
Q 007078 111 H-NIISAGDALRLIYEQNV-IHGDFVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 111 ~-~~~~~gdalr~~~~~~~-i~~dfLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
+ ...|...+++..... + -.+.|++++||+ +....+..+++.+.+.
T Consensus 66 ~~~~~G~~~sl~~a~~~-~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQ-LPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp STSSCSHHHHHHHHHHT-STTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHh-cccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 3 347888888865432 2 234599999999 4456788999888754
No 117
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.31 E-value=4.7e-11 Score=110.56 Aligned_cols=105 Identities=28% Similarity=0.359 Sum_probs=67.5
Q ss_pred ecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECCCcEE
Q 007078 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL 394 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I 394 (619)
.+++++++++.|.+.++|..++.||+++.|+.++.|. +++||++|.|+.++.|.+ ++|++++.|+.++.|
T Consensus 11 ~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I 90 (139)
T cd03350 11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV 90 (139)
T ss_pred CCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence 3455666666666666666666677777777777663 677777777777777742 455555555555554
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
..+++||+++.|+++++|.++++|+++ +++++|..
T Consensus 91 -----~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~ 125 (139)
T cd03350 91 -----VEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYG 125 (139)
T ss_pred -----CCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEec
Confidence 666666666666666666666666666 66666654
No 118
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.30 E-value=3.1e-11 Score=117.99 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI 377 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I 377 (619)
++.+++++.|+++|.|.. ..||++|.|++++.+.+++||++|.|+++++|
T Consensus 33 ~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I 82 (193)
T cd03353 33 KTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVGPFAHL 82 (193)
T ss_pred cCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEEeeEECCCCEECCccEE
Confidence 344444444444444432 24444444444444444444444444444444
No 119
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.30 E-value=3.9e-11 Score=117.24 Aligned_cols=90 Identities=33% Similarity=0.484 Sum_probs=50.9
Q ss_pred CEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCE
Q 007078 340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVV 416 (619)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~v 416 (619)
+.|++++.||+++.|+++++|. +++||++|.|++++.|. ++.|++++.|+.++.|. ++.|+++++||.+++|.++++
T Consensus 94 a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ 173 (201)
T TIGR03570 94 AIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVT 173 (201)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCE
Confidence 3333444444444444444443 35566666666666664 46666666777666664 455566666666666666666
Q ss_pred ECCCcEECCCCEE
Q 007078 417 LSFKVVIGERFVV 429 (619)
Q Consensus 417 Ig~~v~Ig~~~~i 429 (619)
|+++++|++++++
T Consensus 174 i~~~~~i~~~~~v 186 (201)
T TIGR03570 174 IGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEECCCCEE
Confidence 6655555555553
No 120
>PLN02472 uncharacterized protein
Probab=99.30 E-value=4.2e-11 Score=120.75 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred eeecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEeceEECCCCEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (619)
...+.++++.++.|.++++|.++ +.||.+|.|+++|+|. +++||++|.||++|+|.+|+|+++|.|
T Consensus 73 ~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I 152 (246)
T PLN02472 73 VLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII 152 (246)
T ss_pred EEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence 44567889999999988888764 8899999999999993 589999999999999988888888888
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
|.+|.| .+ +++|+.+|+|+.+++|.+|..++++.++...|
T Consensus 153 G~~svI-----~~------gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~P 192 (246)
T PLN02472 153 GQHSIL-----ME------GSLVETHSILEAGSVLPPGRRIPTGELWAGNP 192 (246)
T ss_pred CCCCEE-----CC------CCEECCCCEECCCCEECCCCEeCCCCEEEecC
Confidence 776654 44 44455555555566677777777777777655
No 121
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.29 E-value=2.6e-11 Score=101.47 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=73.3
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (619)
+++++.|++++.|. ++.||+++.|++++.|.+++|+++|.|+++|+|.+++|++++.|++++++.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 57788899999995 79999999999999999999999999999999999999999999999999999999988888774
No 122
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.9e-12 Score=136.63 Aligned_cols=67 Identities=33% Similarity=0.457 Sum_probs=38.0
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
++.+|.++.|+.+++| .|++||.||.||.+++|.+|+|+.+|+||.||+|++++||++|+|+.||.+
T Consensus 333 ~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 333 NVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAIL 399 (673)
T ss_pred eEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCccc
Confidence 4444555555555555 455566666666666666666666666666666666666555555555544
No 123
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.29 E-value=5.4e-11 Score=115.16 Aligned_cols=67 Identities=31% Similarity=0.452 Sum_probs=36.4
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 363 SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
+.||++|.|++++.|. ++.|++++.|+.++.+. +++||++|+||.++.|.++++|+++++|+++++|
T Consensus 115 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3455555555555542 35566666666666653 2445555555555555555555555555555544
No 124
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=4.2e-11 Score=132.74 Aligned_cols=109 Identities=36% Similarity=0.415 Sum_probs=88.6
Q ss_pred cEECCCC-EEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007078 334 IEQSRSA-QVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (619)
Q Consensus 334 ~~i~~~~-~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I 411 (619)
..+++.+ .|++++.||++|.|+++|.|. +++||++|.|+++|+|.+++|+++|+|+.+|+|.+++|++++.||++++|
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i 335 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL 335 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence 3455553 577778888888888888885 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCEECCCcEECCCCE-----ECCCCEEcCCcccC
Q 007078 412 KPGVVLSFKVVIGERFV-----VPAHSKVSLLQQPT 442 (619)
Q Consensus 412 ~~g~vIg~~v~Ig~~~~-----i~~~~~v~~~~~~~ 442 (619)
.++++|+++++||+++. |+.++.+.+.++.+
T Consensus 336 ~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig 371 (459)
T PRK14355 336 RPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLG 371 (459)
T ss_pred CCCCEeCCCCEECCCccccCCEECCCceeeeecccc
Confidence 99999999999888643 55555555444443
No 125
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.27 E-value=5.6e-11 Score=111.76 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=81.2
Q ss_pred ceeeecceEEcCCcEECCCCEEcC---CcEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEECCCCEECCCc
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (619)
.....+.+-++.++.|.++++|.+ ...||++|.|.++|+|. .+.||++|.||+++.|++|+|+++|.||-|+
T Consensus 23 ~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA 102 (176)
T COG0663 23 SATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGA 102 (176)
T ss_pred CCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCc
Confidence 344567888899999999998875 57899999999999993 7899999999999999999999999999887
Q ss_pred EEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
+| -++|.||++|.|+. |+.|.++..+|+++.+...|
T Consensus 103 ~v-----ldga~IG~~~iVgA------galV~~~k~~p~~~L~~G~P 138 (176)
T COG0663 103 TV-----LDGAVIGDGSIVGA------GALVTPGKEIPGGSLVVGSP 138 (176)
T ss_pred eE-----eCCcEECCCcEEcc------CCcccCCcCCCCCeEeecCc
Confidence 77 44444444444444 34444445555555555443
No 126
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=3.3e-11 Score=133.42 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred ecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEEC
Q 007078 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg 400 (619)
.+++++++++.|+++|.| .+++||++|.|++++.|.+++||++|.||++++|. +++|++++.||.++.|.+++|+
T Consensus 285 ~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~ 360 (456)
T PRK14356 285 YGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLG 360 (456)
T ss_pred eCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEec
Confidence 356778888888888777 35777777777777777777777777777777775 5666666666666555444333
No 127
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.27 E-value=3.2e-11 Score=100.65 Aligned_cols=63 Identities=27% Similarity=0.263 Sum_probs=49.0
Q ss_pred ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEEC
Q 007078 362 DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG 424 (619)
Q Consensus 362 ~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig 424 (619)
+++||++|.||++|+|.+++|++++.|++++.|.++++++++.|++++.+..+++|+++++|+
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 456777777777888888888888888888888888888888888888887767777777665
No 128
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.26 E-value=3.5e-11 Score=105.76 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=55.3
Q ss_pred CEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007078 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (619)
Q Consensus 352 ~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~ 431 (619)
+.|++++.|.+|+||++|.|+ ++.|.+|+||+++.|+++|.|.+++|++++.||.++.|. +++|++++.|++++++.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-RAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-eEEECCCCEECCCCEECC
Confidence 455666666677777777777 777777777777777777777777777777777777774 566666666666665554
Q ss_pred C
Q 007078 432 H 432 (619)
Q Consensus 432 ~ 432 (619)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 3
No 129
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=4.4e-11 Score=99.36 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=67.4
Q ss_pred EEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007078 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK 406 (619)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig 406 (619)
|++.++.|++++.|.+ +.||++|.|++++.|.+++|+++|.|+++++|.+++|++++.|+.++.+.+ +++++++.|+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 5788889999999976 999999999999999999999999999999999999999999999988866 6666666655
No 130
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.24 E-value=7.7e-11 Score=119.89 Aligned_cols=107 Identities=27% Similarity=0.279 Sum_probs=61.6
Q ss_pred cceEEcCCcEECCCCEEc-----CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECC
Q 007078 326 RGMYRALEIEQSRSAQVG-----SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED 390 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~-----~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~ 390 (619)
+++|++.++.|++++.|. .++.||++|.|+.++.|+ +++||++|.|+.++.|.+ ++|+++|.||.
T Consensus 108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa 187 (272)
T PRK11830 108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA 187 (272)
T ss_pred CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECC
Confidence 355555555555555554 344555555555555554 346666666666665542 56666666666
Q ss_pred CcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEcC
Q 007078 391 GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVSL 437 (619)
Q Consensus 391 ~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~i~~~~~v~~ 437 (619)
+|.| ..+++||++|+|++|++|+.++.|++.+ .||+++++..
T Consensus 188 ~s~I-----~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~ 236 (272)
T PRK11830 188 RSEV-----VEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVP 236 (272)
T ss_pred CCEE-----cCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEec
Confidence 6665 5555555555555555555555555433 2777777753
No 131
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.24 E-value=1.7e-10 Score=108.60 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=75.7
Q ss_pred eeecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007078 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (619)
...++++++.++.|++++.|.++ ++||+++.|+++++|.. ++||++|.|+.+|+|.+++|++++.|+.++.+
T Consensus 13 ~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v 92 (153)
T cd04645 13 TVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAII 92 (153)
T ss_pred EEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEE
Confidence 34467999999999999999764 69999999999999975 69999999999999999999999999988777
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (619)
. .++.|+++|+|+.+++|..++.|++++
T Consensus 93 ~-----~~~~ig~~~~ig~~~~v~~~~~i~~~~ 120 (153)
T cd04645 93 L-----DGAVIGKGSIVAAGSLVPPGKVIPPGS 120 (153)
T ss_pred c-----CCCEECCCCEECCCCEECCCCEeCCCC
Confidence 3 344444444444444333333333333
No 132
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.23 E-value=9.3e-11 Score=115.54 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=84.8
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEece-E----------------ECCCCEEC
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGS-Y----------------IWDNVIIE 389 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s-~----------------I~~~v~Ig 389 (619)
+..+++++.|+++|.|. ++.||.+|.|+.++.|.++.||++|.|+++++|.+. . +++....+
T Consensus 19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 46788889999999884 789999999999999999999999999999998632 0 11111000
Q ss_pred ----CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 390 ----DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 390 ----~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
..-...+++||++++||.+|+|.+|++||++++|++|++ +++++++...|
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~P 155 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVP 155 (204)
T ss_pred ccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecC
Confidence 011235677788888888888888888888888888888 66777776654
No 133
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.22 E-value=2.2e-10 Score=113.05 Aligned_cols=64 Identities=36% Similarity=0.505 Sum_probs=28.5
Q ss_pred cCCcEECCCCEEcCCcEECCCCEECCCcEE-eceEECCCCEECCCcEEec-eEECCCCEECCCcEE
Q 007078 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL 394 (619)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I 394 (619)
++++.|++.+.|++++.||+++.|++++.| .++.||++|.|+++++|.+ ++|++++.|++++.|
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 344444444444444444444444444444 2444444444444444432 444444444444444
No 134
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=3.8e-11 Score=125.79 Aligned_cols=116 Identities=24% Similarity=0.243 Sum_probs=97.2
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEE
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIV 399 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI 399 (619)
..+.+..+-++.++.|.+++.|.+++.||.+|.||++|+|.+|.||++|.|-..++|.+|.|+.++.||+.++++ ++.+
T Consensus 262 t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L 341 (460)
T COG1207 262 TTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVL 341 (460)
T ss_pred eEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcc
Confidence 456667888999999999999999999999999999999999999999999999999999999999999999996 6888
Q ss_pred CCCcEECCCCEECCCCEECCCcE-----------ECCCCEECCCCEEcC
Q 007078 400 CDGVIMKAGAVLKPGVVLSFKVV-----------IGERFVVPAHSKVSL 437 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~-----------Ig~~~~i~~~~~v~~ 437 (619)
+++++||..|.+. ++.||.+++ ||.++.|++||+...
T Consensus 342 ~~~~hIGNFVEvK-~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcN 389 (460)
T COG1207 342 GADVHIGNFVEVK-KATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCN 389 (460)
T ss_pred cCCCeEeeeEEEe-cccccCCccccceeeeccceecCCceeccceEEEc
Confidence 8888888887776 466666543 555555666655543
No 135
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.1e-10 Score=97.39 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=68.9
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK 406 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig 406 (619)
+++++.|++++.|+++++||++|.|++++.|.+++|+++|.|+++++|.++++++++.|++++.+.. ++|+++++|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 5677888999999999999999999999999999999999999999999999999999999999976 6666666654
No 136
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=129.75 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=75.6
Q ss_pred eeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE------
Q 007078 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL------ 394 (619)
Q Consensus 322 ~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I------ 394 (619)
....+++.+++++.|+++|.| .+++||++|.|+++++|.+++||++|.||+++.|. ++.|++++.|+.++.|
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~ 361 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD 361 (481)
T ss_pred cEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence 344556667777777777777 45678888888888888777888888888877775 5777777777776554
Q ss_pred -----------eceEECCCcEECCCCEECC-------CCEECCCcEECCCCEECCCCEEcCCc
Q 007078 395 -----------RHVIVCDGVIMKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 395 -----------~~siIg~~v~Ig~~~~I~~-------g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
.+++||++|.||.+++|.. +++||++|.||.+++|.++++|+...
T Consensus 362 ~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~ 424 (481)
T PRK14358 362 AGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAA 424 (481)
T ss_pred CCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCC
Confidence 3455555555555555532 34555555555555555555554433
No 137
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=128.47 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=66.5
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCE----------------ECCCcEEe-ceEECCCCEECCCcEEeceEECCC
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTK----------------IGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDN 385 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~----------------Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~ 385 (619)
...++++++.++.|+++|.|. +++||++|. ||+++.|. +++||.+|.||..+.+.+++|+++
T Consensus 285 ~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~ 363 (482)
T PRK14352 285 QLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG 363 (482)
T ss_pred EEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC
Confidence 444567777777777777663 344444444 44444442 444444444444444445555666
Q ss_pred CEECCCcEEeceEECCCcEECCCCEECC-------CCEECCCcEECCCCEECCCCEEcCCc
Q 007078 386 VIIEDGCELRHVIVCDGVIMKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~-------g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
++|+..+.+.+++||++|.||.++++.. +++||++|.||.+++|.++++|+...
T Consensus 364 ~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~ 424 (482)
T PRK14352 364 TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGA 424 (482)
T ss_pred cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCc
Confidence 6666655666677777777777766642 36666666666666655555555443
No 138
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.20 E-value=1.7e-10 Score=101.44 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=72.2
Q ss_pred cEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC
Q 007078 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (619)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~ 413 (619)
+.|++++.| .+++||.+|.|+ ++.|.+|+|+++|.|+++++|.+++|++++.|+.++.+.+++|++++.|++++.|.+
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 356777777 578899999999 999999999999999999999999999999999999999999999999999999886
Q ss_pred C
Q 007078 414 G 414 (619)
Q Consensus 414 g 414 (619)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 5
No 139
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.20 E-value=3.3e-10 Score=109.77 Aligned_cols=113 Identities=17% Similarity=0.295 Sum_probs=84.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeC
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~ 110 (619)
+||||+|.|+||.+ ||+|+|++|+|||+|+++.+.++++++|+|+++++.+.+..++.. ...+.++..
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSNITLVHN 69 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCCeEEEEC
Confidence 79999999999985 999999999999999999999999999999999876665544432 123455543
Q ss_pred CC-ccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHh
Q 007078 111 HN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 111 ~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
.. ..|.+.+++.... .....+ |+++.||+ +....++.+++.+...
T Consensus 70 ~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred cChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 32 2477777775432 122334 99999998 5566888998887653
No 140
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.20 E-value=1.8e-09 Score=109.21 Aligned_cols=231 Identities=13% Similarity=0.128 Sum_probs=130.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeC
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~ 110 (619)
+||+|+|.|+||. +|+|+|++|+|||.|+++.+..+++++|+|++.. +.+.+++.+. ++++.....
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~------g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF------GIEVCMTSK 67 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc------CCEEEEeCC
Confidence 7999999999994 7999999999999999999999999999988763 5566666541 233222112
Q ss_pred CCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCc
Q 007078 111 HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE 187 (619)
Q Consensus 111 ~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~ 187 (619)
....|+......+.....-..+ ++++.||. +....+..+++.+++. +...+|.+.....+. ..+..+.
T Consensus 68 ~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~----~~~~a~~~~~~~d~~-----~~~~p~~ 138 (238)
T TIGR00466 68 HHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK----NVPMAALAVKIHDAE-----EAFNPNA 138 (238)
T ss_pred CCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC----CCCEEEEeeecCCHH-----HccCCCc
Confidence 2333443333322211111345 67789999 6666889999987532 122344444332221 1111112
Q ss_pred eEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCc--chhHHHHhhhhhh
Q 007078 188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHLRRHFVKGL 265 (619)
Q Consensus 188 ~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnf--d~q~~r~dfi~~v 265 (619)
.-++.| ..++.++|...+.+..+.... ....|.. ..-+...|||-++.++|..|..-- .++..++ +. .
T Consensus 139 vk~v~~-~~g~alyfsr~~ip~~R~~~~----~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~--le-q 208 (238)
T TIGR00466 139 VKVVLD-SQGYALYFSRSLIPFDRDFFA----KRQTPVG--DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEK--LE-Q 208 (238)
T ss_pred eEEEeC-CCCeEEEecCCCCCCCCCccc----ccccccc--cceeEEEEEEeCCHHHHHHHHhCCCCcccccch--hH-H
Confidence 222335 467888887654321111000 0011111 012346899999999998876421 1111110 00 0
Q ss_pred ccccccCceEEEEEccccchhhccChhhH
Q 007078 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSY 294 (619)
Q Consensus 266 L~~~~~g~~I~~~~~~~~y~~~V~~~~sY 294 (619)
|.-..+|.+|++......-...|++++++
T Consensus 209 lr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 209 LRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11123689999987752213478887754
No 141
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=8.3e-11 Score=129.94 Aligned_cols=66 Identities=26% Similarity=0.419 Sum_probs=44.5
Q ss_pred cEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007078 346 TVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (619)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I 411 (619)
+.||+++.|++++.|. +++||++|.||.++.|.+++|++++.|+.++.+.+++||++|.||+++.+
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~ 380 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTIT 380 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECcccee
Confidence 4566777777777775 67777777777777777777777776666666666666665555554443
No 142
>PRK10502 putative acyl transferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=112.18 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=69.7
Q ss_pred ceEEcCCcEECCCCEEcC--CcEECCCCEECCCcEEe---ceEECCCCEECCCcEEec-eEECCCCEECCCcEEeceEEC
Q 007078 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg 400 (619)
.+.+++++.|.+++.|.. ++.||++|.|++++.|. .++||++|.|+++|.|.. +....+. .........+||
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~--~~~~~~~~i~Ig 128 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDP--HFDLNTAPIVIG 128 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCC--CcccccCCEEEc
Confidence 456777888888877754 57788888888888774 567777777777776631 1110000 000111334567
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
++|+||++|.|.+|++||++++||++++ +++++++...|
T Consensus 129 d~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~P 171 (182)
T PRK10502 129 EGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNP 171 (182)
T ss_pred CCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCc
Confidence 7777777777777777777777777666 55666655544
No 143
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.19 E-value=2.5e-10 Score=99.71 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=70.6
Q ss_pred ecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCc
Q 007078 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGV 403 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v 403 (619)
.+.+++++++.|.+++.|.+++.||+++.|++++.|. +++||++|.||. .|.+++|++++.|+++++|.+++||+++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v 86 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWC 86 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCC
Confidence 4678899999999999888889999999999888886 688888888875 5778888888888888888777777777
Q ss_pred EECCCCEEC
Q 007078 404 IMKAGAVLK 412 (619)
Q Consensus 404 ~Ig~~~~I~ 412 (619)
.||+++.+.
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 777776654
No 144
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.3e-10 Score=127.61 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=54.0
Q ss_pred CcEECCCCEECCCcEEeceEECCCC----------EECCCcEEeceEECCCCEECCCcEEec--------eEECCCcEEC
Q 007078 345 FTVIGYGTKIGSNSKISDSVIGEGC----------TIGSNVLIEGSYIWDNVIIEDGCELRH--------VIVCDGVIMK 406 (619)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~~svIG~~~----------~Ig~~~~I~~s~I~~~v~Ig~~~~I~~--------siIg~~v~Ig 406 (619)
++.||+++.|+++++|.+|+||++| +||+.+.|.+|+|+++|.||.++.+.+ ++||++|+||
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig 377 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG 377 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence 5556666666666666666666555 666666677888888888888887742 4556666666
Q ss_pred CCCEECCCCEECCCcEECCCCE
Q 007078 407 AGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 407 ~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
.++.|.+|++||++++||+|++
T Consensus 378 ~~~~i~~~~~ig~~~~i~~g~~ 399 (430)
T PRK14359 378 SDTQLVAPVNIEDNVLIAAGST 399 (430)
T ss_pred CCCEEeCCcEECCCCEECCCCE
Confidence 6655555555555555555554
No 145
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.18 E-value=3.3e-10 Score=109.20 Aligned_cols=112 Identities=24% Similarity=0.307 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
+.+||||+|.++||++ ||+|+|++|+|||+|+++.+..+++++|+|+++.....+.+++.. ..+.++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~--------~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG--------LPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC--------CCeEEE
Confidence 4589999999999987 999999999999999999999999999999998876666555432 123333
Q ss_pred eCC-CccCHHHHHHHHHhhcccC--CC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 109 ESH-NIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 109 ~~~-~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
..+ ...|++.+++.... .+. .+ +++++||+ +....+..+++.++.
T Consensus 68 ~~~~~~~G~~~~i~~al~--~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 68 INPDWEEGMSSSLAAGLE--ALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred eCCChhhCHHHHHHHHHH--hccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 332 33577777765432 233 44 89999998 666788888887764
No 146
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.17 E-value=3.4e-10 Score=110.67 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=75.3
Q ss_pred eecceEEcCCcEECCCCEEcCC---cEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe
Q 007078 324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (619)
..++++++.++.|.++|+|.++ ++|+.+|.|+++|+|. +++||++|.||+++.|.+++|+++|.||.++.|
T Consensus 25 I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V- 103 (196)
T PRK13627 25 LIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVI- 103 (196)
T ss_pred EECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCcc-
Confidence 3467788888888888888653 5788889999998884 589999999999999999989888888887666
Q ss_pred ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
.++++||+++.|+.|++ |.++..+|+++++...
T Consensus 104 ----~~g~~IG~~s~Vgags~------V~~~~~ip~~~~~~G~ 136 (196)
T PRK13627 104 ----MDGAVIGEESIVAAMSF------VKAGFQGEKRQLLMGT 136 (196)
T ss_pred ----CCCcEECCCCEEcCCCE------EeCCcCcCCCcEEEec
Confidence 45555555555555444 4444444445444443
No 147
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.16 E-value=5.1e-10 Score=109.41 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=79.9
Q ss_pred ecceEEcCCcEECCCCEE----cCCcEECCCCEECCCcEEe---ceEECCCCEECCCcEEeceE--------ECCCCEEC
Q 007078 325 RRGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY--------IWDNVIIE 389 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~s~--------I~~~v~Ig 389 (619)
..++.+++++.++.+|.+ .+.+.||+++.|++++.|. ++.||++|.|+.+|.|.+.. .+.+..+.
T Consensus 41 ~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~ 120 (192)
T PRK09677 41 DGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLP 120 (192)
T ss_pred CCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccC
Confidence 457888888888888888 3578899999999999885 78999999999999886421 22222221
Q ss_pred ---CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEEC----CCCEEcCC
Q 007078 390 ---DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP----AHSKVSLL 438 (619)
Q Consensus 390 ---~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~----~~~~v~~~ 438 (619)
.......++||++++||.+|+|.+|++||++|+||++++|. +++++...
T Consensus 121 ~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~ 176 (192)
T PRK09677 121 PDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGN 176 (192)
T ss_pred hhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEec
Confidence 12233456677788887777777777777777777777643 44444443
No 148
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.16 E-value=2.3e-10 Score=106.99 Aligned_cols=109 Identities=25% Similarity=0.353 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCCCC-CCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 29 LQAILLADSFTTKFR-PITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~-PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
|.+||+|+|+|+||. | -|||++++|+|||+|+++.|.+ .+.+|++.++.|...++.|+.+. .+.+
T Consensus 1 m~~iiMAGGrGtRmg~~-----EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------gv~v 66 (177)
T COG2266 1 MMAIIMAGGRGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------GVKV 66 (177)
T ss_pred CceEEecCCcccccCCC-----cCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------CceE
Confidence 578999999999998 5 7999999999999999999999 89999999999999999999872 2556
Q ss_pred EeCCCccCHHHHHHHHHhhcccCCCEEEEeCCe-ec-hhhHHHHHHHHH
Q 007078 108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDT-VS-NMLLTQALQEHK 154 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~-i~-~~~l~~~l~~H~ 154 (619)
+..+......|. +. +-..+..+||++++|+ +. +..+..+++.+.
T Consensus 67 i~tpG~GYv~Dl-~~--al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 67 IETPGEGYVEDL-RF--ALESLGTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEcCCCChHHHH-HH--HHHhcCCceEEEecccccCCHHHHHHHHHHHh
Confidence 654444344443 32 2244666999999999 33 345666666555
No 149
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.16 E-value=4.6e-10 Score=108.63 Aligned_cols=93 Identities=31% Similarity=0.446 Sum_probs=54.9
Q ss_pred CEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEE
Q 007078 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVL 417 (619)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vI 417 (619)
+.+.+++.+|.++.|+++ ++|+.++.||++|.|. +++|+.++.||++|+| .+++++.++.||++|+|+.+++|
T Consensus 91 ~~i~~~~~ig~~~~i~~~-----~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 91 AVVSPSAVIGEGCVIMAG-----AVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred eEECCCCEECCCCEEcCC-----CEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 333334444444444433 3556666666666663 5666666666666666 35666666666666666666666
Q ss_pred CCCcEECCCCEECCCCEEcC
Q 007078 418 SFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 418 g~~v~Ig~~~~i~~~~~v~~ 437 (619)
.++++||++++|+++++|..
T Consensus 166 ~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 166 IQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred cCCCEECCCCEECCCCEEcC
Confidence 66666666666666666654
No 150
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.15 E-value=2.5e-10 Score=94.57 Aligned_cols=72 Identities=26% Similarity=0.431 Sum_probs=39.8
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 365 IGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 365 IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
||++|.|+++|.|.+++|++++.|+++|+|.+++|++++.|+++++|. +++|++++.|++++.++++++++.
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~v~~ 73 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISF 73 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCCEEeC
Confidence 455555555555555555555555555555555555555555555554 455555555555555555555543
No 151
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.15 E-value=1.9e-10 Score=127.37 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=51.5
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR 395 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~ 395 (619)
...+++.+++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. ++.|++++.||+++.|.
T Consensus 279 ~i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 279 IIEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred EEecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 34556778888888888877 46788888888888877777777777777777775 56666666666655443
No 152
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.15 E-value=3.2e-10 Score=115.31 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=32.4
Q ss_pred eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
+.||++|+||.|+.| |..||++|+||+|++|.++|+|..
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 567888888888888 788888888888888888888876
No 153
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.13 E-value=4.5e-10 Score=112.72 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=76.8
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECCCc
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC 392 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~ 392 (619)
...++++++.++.|++++.|.+++.||++|.|++++.|. +++||++|.||.+++|.+ +.|+++|.||.++
T Consensus 94 ~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gs 173 (231)
T TIGR03532 94 IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANA 173 (231)
T ss_pred EEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCC
Confidence 345789999999999999999999999999999999995 999999999999999974 6677777777776
Q ss_pred EEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
.| .+++.||++++|++|++|-.+ |.+++++
T Consensus 174 vI-----~~g~~Ig~~~~IgagsvV~~d--i~~~~vv 203 (231)
T TIGR03532 174 VI-----LEGVRVGKGAVVAAGAIVTED--VPPNTVV 203 (231)
T ss_pred EE-----cCCCEECCCCEECCCCEEccc--cCCCcEE
Confidence 66 445555555555555554432 4555553
No 154
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.9e-10 Score=120.69 Aligned_cols=100 Identities=26% Similarity=0.350 Sum_probs=84.2
Q ss_pred eeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC
Q 007078 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD 401 (619)
Q Consensus 322 ~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~ 401 (619)
.+..+++|+++++.|++++.|+++++||++|.|+.++.|.+|+|.++|.||++++|.+|+|+.+|+||.++ + +++
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----i~d 330 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----IGD 330 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----ecc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999922 2 666
Q ss_pred CcEECCCCEECCCCEECCCcEECCCC
Q 007078 402 GVIMKAGAVLKPGVVLSFKVVIGERF 427 (619)
Q Consensus 402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (619)
+.+|.++.|.+|.+++.+++++.+.
T Consensus 331 -~~~g~~~~i~~g~~~~~~~~~~~~~ 355 (358)
T COG1208 331 -VVIGINSEILPGVVVGPGSVVESGE 355 (358)
T ss_pred -eEecCceEEcCceEeCCCccccCcc
Confidence 6666666666655555555555443
No 155
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.12 E-value=8.5e-11 Score=104.76 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=77.5
Q ss_pred EECCCCEECCCcEEe----ceEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007078 347 VIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (619)
Q Consensus 347 ~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (619)
++...+.|..++.|+ +..||+.|++++++.|. +..||++|.|+++|++..+.||..+++|.+|
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna 114 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA 114 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce
Confidence 333334444444442 56777777777777775 4579999999999999999999999999999
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEcCCcccCC
Q 007078 410 VLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTV 443 (619)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~~~ 443 (619)
+||.+|+|.+.|+|-+++++|+.+.++.....+.
T Consensus 115 viGrrCVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 115 VIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred eEcCceEhhhheeccCCcccCcccccCCceEEcC
Confidence 9999999999999999999999999887764443
No 156
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=6.8e-10 Score=122.99 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=43.8
Q ss_pred ecceEEcCCcEECCCCEEcCCcE----------------ECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCE
Q 007078 325 RRGMYRALEIEQSRSAQVGSFTV----------------IGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVI 387 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~~~----------------Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~ 387 (619)
.+++++++++.|++++.|. ++. ||.+|.|++++.|. +++||++|.|+.++.|.++.|++++.
T Consensus 281 ~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~ 359 (458)
T PRK14354 281 KGNTVIGEDCVIGPGSRIV-DSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTK 359 (458)
T ss_pred ecceEECCCCEECCCcEEe-ccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCE
Confidence 3455666666666665553 333 44444444444443 45555555555555555555555555
Q ss_pred ECCCcEEeceEECCCcEECCCC
Q 007078 388 IEDGCELRHVIVCDGVIMKAGA 409 (619)
Q Consensus 388 Ig~~~~I~~siIg~~v~Ig~~~ 409 (619)
++..+.+.+++||+++.||.++
T Consensus 360 i~~~~~~~~~~ig~~~~ig~~~ 381 (458)
T PRK14354 360 VSHLTYIGDAEVGENVNIGCGT 381 (458)
T ss_pred ecceeeecCcccCCceEEcCce
Confidence 5555555555555555555443
No 157
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.11 E-value=7.8e-10 Score=108.03 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=56.9
Q ss_pred eEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCcEE
Q 007078 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIM 405 (619)
Q Consensus 328 i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~I 405 (619)
.+++.++.|++++.|++++.|++++.|+++|.|. +++|+.+|.||.+++|. ++.|..+++|+++|+| +.++.|
T Consensus 94 a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----g~~~~v 168 (201)
T TIGR03570 94 AIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFI-----GAGATI 168 (201)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEE-----CCCCEE
Confidence 3444444455555555555555555555555442 44555555555555442 3444444555554444 566666
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 406 KAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 406 g~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
..++.|+++|+|+.+++|..+ +++++++...|
T Consensus 169 ~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~p 200 (201)
T TIGR03570 169 IQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVP 200 (201)
T ss_pred eCCCEECCCCEECCCCEECCc--CCCCCEEEecc
Confidence 666666666666666666554 67777665543
No 158
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=3.4e-10 Score=125.06 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.7
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007078 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (619)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (619)
+|+.++.|+++++|. +++||++|.||+++.+.+++|++++.++..+.+.+++||++|.||+++.
T Consensus 308 ii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 372 (448)
T PRK14357 308 VIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTI 372 (448)
T ss_pred EEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcc
Confidence 345555566666674 5788888888888888777777777666666666666666666665443
No 159
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.11 E-value=7.1e-10 Score=105.41 Aligned_cols=99 Identities=27% Similarity=0.312 Sum_probs=55.0
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCC--CEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcE
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYG--TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI 404 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~--~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~ 404 (619)
.+++..++.|++++.|++++.|+.+ +.|+++ ++||++|.|+++|.|...... .....++||++|+
T Consensus 55 ~~~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~-----~~IG~~~~I~~~v~ig~~~~~--------~~~~~~~Ig~~v~ 121 (162)
T TIGR01172 55 FIRVLTGVDIHPGARIGRGVFIDHGTGVVIGET-----AVIGDDVTIYHGVTLGGTGKE--------KGKRHPTVGEGVM 121 (162)
T ss_pred HHheeeCeEeCCCCEECCCeEECCCCeEEECCC-----CEECCCCEEcCCCEECCCccc--------cCCcCCEECCCcE
Confidence 3445556666666666666666543 233322 455666666655555432110 1123455677777
Q ss_pred ECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCC
Q 007078 405 MKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLL 438 (619)
Q Consensus 405 Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~ 438 (619)
||++|+|..+++||++|+||++++ +|+++++...
T Consensus 122 Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~ 159 (162)
T TIGR01172 122 IGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGV 159 (162)
T ss_pred EcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEee
Confidence 777777776666666666666666 4555555443
No 160
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.09 E-value=1.3e-09 Score=100.01 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=49.2
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCC----CEECCCcEEeceEECC
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDN----VIIEDGCELRHVIVCD 401 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~----v~Ig~~~~I~~siIg~ 401 (619)
..++++++.|.+++.|..++.||.+|.|.- +| .+++||++|.||++|.|. +.+..+ +.||++|+| |.
T Consensus 13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~I-----G~ 84 (147)
T cd04649 13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLL-----GA 84 (147)
T ss_pred CCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEE-----CC
Confidence 344444444444444444444444444431 22 256788888888888887 445555 666666666 44
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCE
Q 007078 402 GVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
++.| ++.|+++|+||.+++|-+++.
T Consensus 85 ga~I--gv~IG~~~vIGaGsvV~k~t~ 109 (147)
T cd04649 85 NSGI--GISLGDNCIVEAGLYVTAGTK 109 (147)
T ss_pred CCEE--eEEECCCCEECCCCEEeCCeE
Confidence 4444 344444444444444444444
No 161
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.08 E-value=9.9e-10 Score=111.28 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=71.2
Q ss_pred cCCcEECCCCEEcCCcEECCCCEECCCcEEe-ce-EECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eE
Q 007078 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DS-VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VI 398 (619)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s-vIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------si 398 (619)
..+++|...+.+.-++.||++|.|.++++|. ++ +||+. .| +++|. +++|++++.|+.++.|.. ..
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~ 227 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS 227 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence 3455555555555555566666665555553 44 46664 44 35553 577888888888888544 67
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
||++|+||.||.| |..||++|+||+|++|-++|+|...
T Consensus 228 IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~~~ 265 (319)
T TIGR03535 228 IGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVTLW 265 (319)
T ss_pred ECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEEEe
Confidence 8888888888888 7888888888888888888888753
No 162
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.08 E-value=9.4e-10 Score=107.91 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=67.8
Q ss_pred EcCCcEECCCCEE--cCCcEECCCCEECCCcEEe---ceEECCCCEECCCcEEece-EECCCCEECCCc-EEeceEECCC
Q 007078 330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGC-ELRHVIVCDG 402 (619)
Q Consensus 330 ~~~~~~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~-~I~~siIg~~ 402 (619)
+++++.|.+.+.+ +.++.||.++.|+.+|+|. ++.||++|.||++|.|... .-.+......+. .....+||++
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~ 137 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence 5666777766665 4678888888888888883 5789999999999888521 100000000111 1123456777
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcCCc
Q 007078 403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ 439 (619)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~i----~~~~~v~~~~ 439 (619)
|+||.+++|.+|++||++++||+|++| |+++++...|
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~P 178 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVP 178 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeC
Confidence 777777777766666666666666653 4555555443
No 163
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.08 E-value=7.8e-10 Score=99.15 Aligned_cols=89 Identities=34% Similarity=0.392 Sum_probs=59.9
Q ss_pred CCCCEECCCcEEe-ceEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEE----------CCCcEECCCCEECCCCE
Q 007078 349 GYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIV----------CDGVIMKAGAVLKPGVV 416 (619)
Q Consensus 349 g~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI----------g~~v~Ig~~~~I~~g~v 416 (619)
|+++.|++++.|. +++||++|.|++++.| .+++|++++.|++++.+.++.+ -.+++||++|+|+.+++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 3444444444443 4566666666666666 3567777777777777755432 24567888888888888
Q ss_pred ECCCcEECCCCEECCCCEEcC
Q 007078 417 LSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 417 Ig~~v~Ig~~~~i~~~~~v~~ 437 (619)
+.++++|++++.|++++++..
T Consensus 82 v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 82 ILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred EeCCcEECCCCEEccCCEEeC
Confidence 888888888888888887754
No 164
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.06 E-value=5.6e-09 Score=103.97 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
+.|||||+|.++||. +|+|+|++|+|||+|+|+.+.+++ +++|+|.+. .+.+.+++.+. +..+.+
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~------~~~~~~ 67 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY------GAEVPF 67 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh------CCCcee
Confidence 579999999999994 599999999999999999999987 788877663 35566655431 121222
Q ss_pred EeC----CCccCHHHHHHHHHhh-ccc--C-CCEEEEeCCe--echhhHHHHHHHHHHh
Q 007078 108 IES----HNIISAGDALRLIYEQ-NVI--H-GDFVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 108 i~~----~~~~~~gdalr~~~~~-~~i--~-~dfLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
+.. ....+++++++..... ... . +.|+++.||. +....+..+++.|+..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 221 2223556666544321 100 1 2389999999 7778999999998764
No 165
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.04 E-value=2e-09 Score=109.65 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=78.3
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceE-ECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCC----
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSV-IGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDG---- 402 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~sv-IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siIg~~---- 402 (619)
++.+++|++++.|..++.||+||.|.++++|. ++. +|.++.-|. | .+++|+++|.||.+|.| .+++..+
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgr---InsGavIGhds~IG~gasI-g~tLsGg~~~~ 250 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGR---ISAGVMVGKGSDLGGGCST-MGTLSGGGNIV 250 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecc---cccCCEECCCCEECCCCEE-eEEEeCCCcee
Confidence 45566677666666667777777666666443 333 444444110 3 25778888888999988 5555667
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCcccCC
Q 007078 403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTV 443 (619)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~~~~~ 443 (619)
+.||++|.|+.||.| ++.||++++|++|++|...+.+.-
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 999999999999999 999999999999999998765544
No 166
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.04 E-value=6.5e-10 Score=108.27 Aligned_cols=103 Identities=23% Similarity=0.253 Sum_probs=53.8
Q ss_pred EECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-------------ceEE
Q 007078 335 EQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-------------HVIV 399 (619)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-------------~siI 399 (619)
.|+|++.|.+.+.||+++.||+.|.|+ +..||+++.|+++++|. .+.||.+++|-+.+.|. ..+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 344455555555555555555555443 45566666666666664 45566666666665552 2566
Q ss_pred CCCcEECCCCEECCCCEECCC-cEECCCCEECCCCEEcC
Q 007078 400 CDGVIMKAGAVLKPGVVLSFK-VVIGERFVVPAHSKVSL 437 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~-v~Ig~~~~i~~~~~v~~ 437 (619)
|+++.|.++++|..|+.-|.+ +.||++..+.+++-|.+
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAH 123 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAH 123 (260)
T ss_pred CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeec
Confidence 666666666666655443322 23333333333333333
No 167
>PLN02694 serine O-acetyltransferase
Probab=99.03 E-value=9.4e-10 Score=112.08 Aligned_cols=74 Identities=32% Similarity=0.393 Sum_probs=46.5
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcC
Q 007078 363 SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSL 437 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~ 437 (619)
++||++|.||++|.|. +++++.. +.++...+++||++|+||.||+|..+++||++|+||+|++ ||+++++..
T Consensus 181 VVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~v~G 257 (294)
T PLN02694 181 VVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVG 257 (294)
T ss_pred eEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcCCCCcEEEc
Confidence 4555555555555543 2222221 3344556777788888888888877788888888888777 456666655
Q ss_pred Cc
Q 007078 438 LQ 439 (619)
Q Consensus 438 ~~ 439 (619)
.|
T Consensus 258 ~P 259 (294)
T PLN02694 258 NP 259 (294)
T ss_pred cC
Confidence 44
No 168
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-09 Score=108.03 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=82.1
Q ss_pred CCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEEC
Q 007078 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VIVC 400 (619)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------siIg 400 (619)
.+++|.+++.+...+.||+|++|.+++.|. ++.++.+|.|.-++.+. ...||.|+.||.|+.|.+ .+|+
T Consensus 107 ~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Ig 186 (271)
T COG2171 107 EGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIG 186 (271)
T ss_pred CceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEEC
Confidence 446777777777777777777777777774 77777777777776665 356888888888888743 6889
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
+||.||+++.+..|+.+|++|+|++|+.|..+|++..
T Consensus 187 dncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 187 DNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred CccEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 9999999988888899999999999988888888864
No 169
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=6.5e-09 Score=90.76 Aligned_cols=82 Identities=18% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCc
Q 007078 344 SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV 421 (619)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v 421 (619)
+.+.|++++.|++++.+. +++||++|.||+++.|. +++|+.++.|+. .|.+++|+++++|+.++.|+ +++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence 467788888888888774 68899999999999886 588888888864 56777888888877777776 56666666
Q ss_pred EECCCCE
Q 007078 422 VIGERFV 428 (619)
Q Consensus 422 ~Ig~~~~ 428 (619)
.||+++.
T Consensus 87 ~ig~~~~ 93 (101)
T cd05635 87 NLGAGTN 93 (101)
T ss_pred EECCCce
Confidence 6666544
No 170
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.97 E-value=6.8e-09 Score=99.42 Aligned_cols=96 Identities=28% Similarity=0.318 Sum_probs=52.4
Q ss_pred cCCcEECCCCEECCCcEEe---ceEECCCCEECCCcEEeceE-ECCCCEECCCcE-EeceEECCCcEECCCCEECCCCEE
Q 007078 343 GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY-IWDNVIIEDGCE-LRHVIVCDGVIMKAGAVLKPGVVL 417 (619)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~s~-I~~~v~Ig~~~~-I~~siIg~~v~Ig~~~~I~~g~vI 417 (619)
+.++.||+++.|+.++.|. +..||++|.|+++|.|.... -.+......+.. ...+.||++|+||.+|+|.+|++|
T Consensus 60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~I 139 (169)
T cd03357 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTI 139 (169)
T ss_pred CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEE
Confidence 3456666677776666663 56888888888888885221 000000001111 123444666666666666666666
Q ss_pred CCCcEECCCCE----ECCCCEEcCC
Q 007078 418 SFKVVIGERFV----VPAHSKVSLL 438 (619)
Q Consensus 418 g~~v~Ig~~~~----i~~~~~v~~~ 438 (619)
|++|+||++++ ||+++++...
T Consensus 140 g~~~~VgagavV~~~vp~~~vv~G~ 164 (169)
T cd03357 140 GDNSVIGAGSVVTKDIPANVVAAGN 164 (169)
T ss_pred CCCCEECCCCEEccccCCCcEEEcc
Confidence 66666666665 4455554443
No 171
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.96 E-value=4.1e-09 Score=101.62 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|.|||||+|.|+||.+ ||+|+|++|+|||+|+++.+... +.+|+|+++..... +. . ..+.++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~--------~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER---YA-L--------LGVPVI 62 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h--------cCCcEe
Confidence 4689999999999986 99999999999999999999988 99999999876544 11 1 123334
Q ss_pred eCC-CccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHH
Q 007078 109 ESH-NIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEH 153 (619)
Q Consensus 109 ~~~-~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H 153 (619)
... ...|...+++.... .+..+ ++++.||+ +....+..+++.+
T Consensus 63 ~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 63 PDEPPGKGPLAGILAALR--AAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred eCCCCCCCCHHHHHHHHH--hcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 332 34566666664432 23444 89999999 5556777877765
No 172
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.96 E-value=1e-08 Score=99.32 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=51.2
Q ss_pred EEcCCcEECCCCEECCCcEEe---ceEECCCCEECCCcEEec-eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCC
Q 007078 341 QVGSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGV 415 (619)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~ 415 (619)
.++.++.||+++.|+.+|+|. ...||++|.|+++|.|.. ....+......+..+ ....||++|+||.+|+|.+|+
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv 148 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGV 148 (183)
T ss_pred eecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCC
Confidence 334455555555555555553 248899999998888852 111122222222222 233445566666666665555
Q ss_pred EECCCcEECCCCE----ECCCCEEcCC
Q 007078 416 VLSFKVVIGERFV----VPAHSKVSLL 438 (619)
Q Consensus 416 vIg~~v~Ig~~~~----i~~~~~v~~~ 438 (619)
+||++++|+++++ +++++++...
T Consensus 149 ~IG~~~vIgagsvV~~di~~~~i~~G~ 175 (183)
T PRK10092 149 TIGDNVVVASGAVVTKDVPDNVVVGGN 175 (183)
T ss_pred EECCCCEECCCCEEccccCCCcEEEec
Confidence 5555555555555 3445554443
No 173
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.95 E-value=7.7e-09 Score=90.99 Aligned_cols=68 Identities=31% Similarity=0.391 Sum_probs=32.0
Q ss_pred ceEECCCCEECCCcEEece---EECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 362 DSVIGEGCTIGSNVLIEGS---YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 362 ~svIG~~~~Ig~~~~I~~s---~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
++.||++|.|+++|+|.++ .++.+..+........++||++++|+.++.|.++++|++++.|++++.|
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v 91 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV 91 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3555555555555555432 2222222222333444444555555555555445555555555444443
No 174
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.95 E-value=4.5e-09 Score=113.63 Aligned_cols=92 Identities=18% Similarity=0.352 Sum_probs=74.0
Q ss_pred CEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECC
Q 007078 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSF 419 (619)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~ 419 (619)
..+...+.+...+.|++++.|.++.||++|.|+. .+.+|+|+++|+||++|+|.+|+|+++|+|+++|.|. +|+|++
T Consensus 271 ~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~-~~ii~~ 347 (380)
T PRK05293 271 WRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIE-RAIIGE 347 (380)
T ss_pred CceecCCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEe-EEEECC
Confidence 3444445555567777777777888999999963 5778999999999999999999999999999999997 589999
Q ss_pred CcEECCCCEECCCCE
Q 007078 420 KVVIGERFVVPAHSK 434 (619)
Q Consensus 420 ~v~Ig~~~~i~~~~~ 434 (619)
+++|++++.+.+++.
T Consensus 348 ~~~i~~~~~i~~~~~ 362 (380)
T PRK05293 348 NAVIGDGVIIGGGKE 362 (380)
T ss_pred CCEECCCCEEcCCCc
Confidence 999988888877633
No 175
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=98.93 E-value=2.3e-08 Score=99.47 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=80.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCC-hHHHHHHHHccCCCCCCCceEEEE
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
|||||+|.|+||.. ..||+|+|++|+|||+|+++.+..+ ++++|+|+++++ .+.+..++... ..+.++
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-------~~~~~~ 71 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-------AVPKIV 71 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-------CcEEEe
Confidence 79999999999974 4699999999999999999999998 899999999875 35565555431 123333
Q ss_pred eCCCccCHHHHHHHHHhhccc-CCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 109 ESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
.... +...+++... ..+ ..+ +|++.||. +....+..+++.++.
T Consensus 72 ~~~~--~~~~sl~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 118 (217)
T TIGR00453 72 AGGD--TRQDSVRNGL--KALKDAEWVLVHDAARPFVPKELLDRLLEALRK 118 (217)
T ss_pred CCCc--hHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 3222 2334454332 223 345 78889998 667788999998765
No 176
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.91 E-value=9.8e-09 Score=90.32 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=62.0
Q ss_pred ceEEcCCcEECCCCEEcC--CcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcE
Q 007078 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI 404 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~ 404 (619)
++++++++.|++++.|.+ ++.||++|.|+++|.|.++ .+..++.++.+.+.....+++||++|.| +.++.
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----g~~~~ 72 (109)
T cd04647 1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH---NHDIDDPERPIEQGVTSAPIVIGDDVWI-----GANVV 72 (109)
T ss_pred CeEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC---CCCCCccccccccccccCCeEECCCCEE-----CCCCE
Confidence 367888999999998887 8999999999999988754 3333333333334444455555555555 34444
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 405 Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
|..++.|+++|+|+.++.|.. .+++++++...
T Consensus 73 i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~g~ 104 (109)
T cd04647 73 ILPGVTIGDGAVVGAGSVVTK--DVPPNSIVAGN 104 (109)
T ss_pred EcCCCEECCCCEECCCCEEee--ECCCCCEEEcc
Confidence 444444444444455555552 35566665543
No 177
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=98.90 E-value=9.2e-08 Score=102.77 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=78.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCChHHHHHHHHccCCCCCCCceE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
+.+.|||||+|.|+||.. ..||+|+|++|+|||+|+++.|..++ +++|+|++++....+.+.+.... . .+
T Consensus 4 m~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~-----~-~v 74 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-----K-FV 74 (378)
T ss_pred CcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-----C-eE
Confidence 457899999999999943 57999999999999999999999998 79999999876444333322110 1 13
Q ss_pred EEEeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
.++... .+..++++... ..+..+ +++..||. +....+..+++..+.
T Consensus 75 ~~v~gG--~~r~~SV~~gL--~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 75 TLVTGG--ATRQESVRNAL--EALDSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred EEeCCC--chHHHHHHHHH--HhcCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 444322 22344455332 234446 56667885 555677888876553
No 178
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.90 E-value=1.2e-08 Score=99.65 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCcEECCCCEECCCcEE-----eceEECCCCEECCCcEEe---ceEECCCCEECCCcEEeceE-----------------
Q 007078 344 SFTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRHVI----------------- 398 (619)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~si----------------- 398 (619)
.+..+|+++.++.++++ ....||++|.|++++.|. ++.||++|.|+.++.|.+..
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~ 121 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP 121 (192)
T ss_pred CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence 34445555555555554 257899999999999996 68999999999999996421
Q ss_pred -----ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 399 -----VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 399 -----Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
....++||++|+|+.+++|..+++||++++|+++++|...
T Consensus 122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~ 166 (192)
T PRK09677 122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS 166 (192)
T ss_pred hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc
Confidence 1246889999999999999999999999999999999863
No 179
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.90 E-value=1.5e-08 Score=88.37 Aligned_cols=64 Identities=33% Similarity=0.470 Sum_probs=40.0
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007078 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE---LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~---I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~ 431 (619)
++||+++.||++|. |++++.|+.++. +..++|+++++|+.++.+..+++|++++.|+++++|.+
T Consensus 23 ~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 23 IVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 45566666665554 345555555554 56666777777777777776666666666666666543
No 180
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.88 E-value=1.3e-08 Score=83.57 Aligned_cols=75 Identities=35% Similarity=0.438 Sum_probs=40.2
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007078 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (619)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (619)
.||+++.|+++++|. ++.||++|.|+++|+|.+..... ......|+++++|+.++.|.+++.|+++++|++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 355555555555554 36677777777776665543221 122344455555555555555555555555555
Q ss_pred CCEE
Q 007078 426 RFVV 429 (619)
Q Consensus 426 ~~~i 429 (619)
+++|
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 5443
No 181
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.87 E-value=1.7e-08 Score=96.62 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=60.9
Q ss_pred eEECCCCEECCCcEEe---ceEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007078 363 SVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (619)
..||++|.|+.+++|. +..|++++.|+++|.|. ...++..++||++|+|+.+++|..+++||++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~ 142 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN 142 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence 4566666666666664 46788888999888884 2355678999999999999999999999999
Q ss_pred CEECCCCEEcCC
Q 007078 427 FVVPAHSKVSLL 438 (619)
Q Consensus 427 ~~i~~~~~v~~~ 438 (619)
++|+++++|...
T Consensus 143 ~~VgagavV~~~ 154 (169)
T cd03357 143 SVIGAGSVVTKD 154 (169)
T ss_pred CEECCCCEEccc
Confidence 999999999763
No 182
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.87 E-value=2.4e-08 Score=98.07 Aligned_cols=77 Identities=25% Similarity=0.206 Sum_probs=62.3
Q ss_pred ceEECCCCEECCCcEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007078 362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (619)
Q Consensus 362 ~svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (619)
++.||++|.|+.+|+|. +..||++|.|+++|.|.. ......++||++|+|+.+++|..+++||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~ 154 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence 55677777777777773 478999999999998852 12344689999999999999999999999
Q ss_pred CCEECCCCEEcCC
Q 007078 426 RFVVPAHSKVSLL 438 (619)
Q Consensus 426 ~~~i~~~~~v~~~ 438 (619)
+++|+++++|...
T Consensus 155 ~~vIgagsvV~kd 167 (203)
T PRK09527 155 NSVIGAGSVVTKD 167 (203)
T ss_pred CCEECCCCEEccc
Confidence 9999999999863
No 183
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.86 E-value=9.6e-09 Score=113.13 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=75.5
Q ss_pred eEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECC----------------C---CEECCCcEEeceEECCCCEE
Q 007078 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE----------------G---CTIGSNVLIEGSYIWDNVII 388 (619)
Q Consensus 328 i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~----------------~---~~Ig~~~~I~~s~I~~~v~I 388 (619)
.+++.++.|+ +|.| .+++|+++|.|+++|+|.+++|.. + +.||++|+|.+++|+++|.|
T Consensus 316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6789999999 8999 478999999999999998777744 3 38999999999999999999
Q ss_pred CCCcEEece-EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCE
Q 007078 389 EDGCELRHV-IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSK 434 (619)
Q Consensus 389 g~~~~I~~s-iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~ 434 (619)
|++|.|.+. -+....++|++|.|+.|. |+||+++.|+++++
T Consensus 394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 435 (436)
T PLN02241 394 GKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGTV 435 (436)
T ss_pred CCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCCC
Confidence 999988433 244444445544444431 46666666666654
No 184
>PRK10502 putative acyl transferase; Provisional
Probab=98.86 E-value=2.1e-08 Score=97.16 Aligned_cols=93 Identities=26% Similarity=0.280 Sum_probs=74.9
Q ss_pred cEECCCCEECCCcEEe---ceEECCCCEECCCcEEe---ceEECCCCEECCCcEEec----------eEECCCcEECCCC
Q 007078 346 TVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH----------VIVCDGVIMKAGA 409 (619)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~----------siIg~~v~Ig~~~ 409 (619)
+.||+++.|++++.|. +..||++|.||++|.|. .+.|+++|.|+++|+|.. ..+...++||++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 3445555555555553 57899999999999996 578999999999998842 2345678999999
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 410 VLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
+|+.+++|..+++||++++|+++++|...
T Consensus 132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~ 160 (182)
T PRK10502 132 WLAADVFVAPGVTIGSGAVVGARSSVFKS 160 (182)
T ss_pred EEcCCCEEcCCCEECCCCEECCCCEEecc
Confidence 99999999999999999999999998753
No 185
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.86 E-value=9.6e-09 Score=110.66 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=71.2
Q ss_pred CCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 350 YGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 350 ~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
..+.|++++.|.+|+||++|.|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.|. +|+|+.+++|++++.+
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCEe
Confidence 56777777888899999999997 46999999999999999999999999999999999997 6999999999888887
Q ss_pred CCC
Q 007078 430 PAH 432 (619)
Q Consensus 430 ~~~ 432 (619)
.+.
T Consensus 354 ~~~ 356 (369)
T TIGR02092 354 AGT 356 (369)
T ss_pred CCC
Confidence 543
No 186
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.86 E-value=3.3e-08 Score=96.29 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
+.+||||+|.|+||.. ||.|++++|+|||+|+++.+.+.++.+++|+++++.+.+.. +...... . ..+.++
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~-~~~~~~~-~--~~~~~~ 71 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSW-LDPYLLA-D--ERIMLV 71 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhh-hhHhhhc-C--CCeEEE
Confidence 3589999999999986 89999999999999999988888999999999876543221 1110000 1 123333
Q ss_pred eC-CCccCHHHHHHHHHhh-cccCCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 109 ES-HNIISAGDALRLIYEQ-NVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 109 ~~-~~~~~~gdalr~~~~~-~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
.. ....|.+.+++..... ..-..+ ++++.||. |....+..+++..+.
T Consensus 72 ~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 72 CCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred ECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 32 2234666666644321 111234 89999999 555567777776543
No 187
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=98.85 E-value=4.4e-08 Score=98.19 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=81.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCCh-HHHHHHHHccCCCCCCCce
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~ 104 (619)
+.+.|||||+|.|+||.. ..||+|+|++|+|||+|+++.+..++ +++|+|+++... +.+..++.. .. ..
T Consensus 2 ~~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~-----~~ 72 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-KD-----PK 72 (227)
T ss_pred CceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-cC-----Cc
Confidence 357899999999999952 46999999999999999999999875 899999998654 444333321 10 12
Q ss_pred EEEEeCCCccCHHHHHHHHHhhccc-CCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 105 VKTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
+..+... .+.+++++... ..+ +.+ ++++.||. +....+..+++.++.
T Consensus 73 ~~~~~~~--~~~~~sv~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 123 (227)
T PRK00155 73 VTVVAGG--AERQDSVLNGL--QALPDDDWVLVHDAARPFLTPDDIDRLIEAAEE 123 (227)
T ss_pred eEEeCCc--chHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 3333322 23566666442 233 345 67777997 667789999998765
No 188
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.85 E-value=3.9e-08 Score=95.23 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
+-+||||+|.|+||.. .||+|+|++|+|||+|+++.+.. ++++|+|++...... +... .+ + +.++
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-~~----~--~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA-GF----G--LPVV 65 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-cC----C--CcEE
Confidence 4589999999999972 59999999999999999999976 599998888754322 2211 11 1 2223
Q ss_pred eC--CCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 109 ES--HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 109 ~~--~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
.. ....|.+.+++.... .+..+ ++++.||. +....+..+++.++.
T Consensus 66 ~~~~~~~~g~~~si~~al~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLR--WAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred ecCCCCCCCCHHHHHHHHH--hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 32 334677777775432 23444 99999998 455566777776543
No 189
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.9e-09 Score=106.89 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=45.4
Q ss_pred EcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007078 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (619)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (619)
+++++.|+..+.| ..++||.+|.||++++|.+|.|.+|++||++|.|.+|+|+.++.||.+|.+.+|+||.+-+|.+..
T Consensus 337 v~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~ 415 (433)
T KOG1462|consen 337 VGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKG 415 (433)
T ss_pred cCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccc
Confidence 3444444444444 345566666666666666666666666666666666666666666666666655555555555443
Q ss_pred EE
Q 007078 410 VL 411 (619)
Q Consensus 410 ~I 411 (619)
..
T Consensus 416 ~~ 417 (433)
T KOG1462|consen 416 KH 417 (433)
T ss_pred cc
Confidence 33
No 190
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.85 E-value=3.2e-08 Score=96.64 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=76.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
..|.+||||+|.|+||. ..||+|+|++|+|||+|+++.+. .++++|+|+++.+.+.+. .. ++.
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~~------~~~-- 64 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARYA----AF------GLP-- 64 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHHH----hc------CCc--
Confidence 45899999999999995 25999999999999999999998 789999999876543321 10 122
Q ss_pred EEeCCC--ccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHH
Q 007078 107 TIESHN--IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (619)
Q Consensus 107 ~i~~~~--~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~ 154 (619)
++.... ..|...+++.... ....+ ++++.||. +....+..+++.++
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLK--QARTEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHH--hcCCCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 232222 2455556654332 23445 88899999 45557778887654
No 191
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.85 E-value=1.4e-08 Score=109.02 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=71.4
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007078 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (619)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (619)
.+-+.+.|++.+.|.+|+||++|.|+.+ +|.+++|+++|.|+++|+|.+|+|++++.||.+|.|. +|+||++++|+++
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~ 356 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR-NAIIDKNVRIGEG 356 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe-eeEECCCCEECCC
Confidence 3445566666677788999999999987 8999999999999999999999999999999999996 7888888888888
Q ss_pred CEEC
Q 007078 427 FVVP 430 (619)
Q Consensus 427 ~~i~ 430 (619)
++|+
T Consensus 357 ~~i~ 360 (361)
T TIGR02091 357 VVIG 360 (361)
T ss_pred CEeC
Confidence 7775
No 192
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.84 E-value=3.4e-08 Score=95.61 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred CEEcCCc--EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-------------ceEECCCcE
Q 007078 340 AQVGSFT--VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-------------HVIVCDGVI 404 (619)
Q Consensus 340 ~~I~~~~--~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-------------~siIg~~v~ 404 (619)
+.|.++. .+|.++.||+++ .|+.+|.|+..+.| .||++|.|+++|+|. ...++..+.
T Consensus 60 ~~i~~~~~~~~g~~i~iG~~~-----~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~ 131 (183)
T PRK10092 60 AYIEPTFRCDYGYNIFLGNNF-----YANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVT 131 (183)
T ss_pred EEEeCCEEEeecCCcEEcCCc-----EECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeE
Confidence 4444433 445555555544 33444444443332 688888888888884 244577899
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 405 Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
||++|+|+.+|+|..+|+||++++|+++++|.+.
T Consensus 132 IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d 165 (183)
T PRK10092 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD 165 (183)
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCCEEccc
Confidence 9999999999999999999999999999999763
No 193
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.84 E-value=4.9e-08 Score=96.94 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEE
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i 108 (619)
.|||||+|.|+||++ ..||+|+|++|+|||+|+++.+..++ +++|+|++++........+.... . ...+.++
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~--~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--L--SKVVKIV 74 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--c--CCCeEEE
Confidence 589999999999986 37999999999999999999999986 99999999876544444332111 0 1234444
Q ss_pred eCCCccCHHHHHHHHHhhccc---CCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 109 ESHNIISAGDALRLIYEQNVI---HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i---~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
... .+.+.+++.... .+ ..+ ++++.||. +....+..+++.+++
T Consensus 75 ~~~--~~~~~si~~al~--~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~ 123 (218)
T cd02516 75 EGG--ATRQDSVLNGLK--ALPDADPDIVLIHDAARPFVSPELIDRLIDALKE 123 (218)
T ss_pred CCc--hHHHHHHHHHHH--hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhh
Confidence 332 234555554332 23 345 67778997 666788999998854
No 194
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=98.83 E-value=3.9e-08 Score=94.62 Aligned_cols=118 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCC-hHHHHHHHHccCCCCCCCce
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~ 104 (619)
...+-+||||+|.++||.. ||.|+|+.|+||+.++++...++++++++|++++. .+........ ..
T Consensus 3 ~~~v~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------~~ 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------LG 69 (199)
T ss_pred CcceEEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc--------CC
Confidence 3568899999999999995 99999999999999999999999999999999986 3333333322 34
Q ss_pred EEEEeCCC-ccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHh
Q 007078 105 VKTIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 105 I~~i~~~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
++++.++. ..|.+..++....+..-.++ .+++.||+ +...++..+++..+.+
T Consensus 70 ~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 VTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred eEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 66666554 45777777755433222235 88999999 8888999999987764
No 195
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.83 E-value=2.6e-08 Score=81.76 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=52.6
Q ss_pred eEECCCCEECCCcEEec-eEECCCCEECCCcEEeceEEC---CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007078 363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVC---DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg---~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v 435 (619)
+.||++|.|+++++|.+ +.|++++.|+++|.|.+.... ..+.||++|+|+.+++|..+++|+++++|++++.|
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 35677777777777764 777777777777777655432 34777888888777777777777777777777765
No 196
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.83 E-value=7e-08 Score=98.47 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=51.9
Q ss_pred cceEEcCCcEECCCCEEcC--CcEECCCCEECCCcEEeceEECCCCEECCC---cEEeceEECCCCEECCCcEEeceEEC
Q 007078 326 RGMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSN---VLIEGSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 326 ~~i~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~---~~I~~s~I~~~v~Ig~~~~I~~siIg 400 (619)
.++.+++++.|++++.|+. +++||++|.||++| .|..+|.||.. +...+..|+++|.||.||.| .
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv-----~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~I-----l 209 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDV-----SILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKI-----L 209 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCC-----EEcCCcEEecCcccCCCcCCEECCCcEEcCCCEE-----c
Confidence 3455555555555555542 33444444444433 44455555432 12234678888888888777 5
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
.+++||+||+|++|++|..+ |.+++++
T Consensus 210 ggv~IG~~a~IGAgSvV~~d--Vp~~~~v 236 (273)
T PRK11132 210 GNIEVGRGAKIGAGSVVLQP--VPPHTTA 236 (273)
T ss_pred CCCEECCCCEECCCCEECcc--cCCCcEE
Confidence 56666666666666666654 6666653
No 197
>PLN02357 serine acetyltransferase
Probab=98.81 E-value=1.8e-08 Score=105.65 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=29.2
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCC
Q 007078 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLL 438 (619)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~ 438 (619)
.+++||++|+||.||.|..|++||++++||+|++ ||+++++...
T Consensus 277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~ 324 (360)
T PLN02357 277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGN 324 (360)
T ss_pred cCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECC
Confidence 3566777777777777766777777777777766 3555555443
No 198
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.80 E-value=5.7e-08 Score=85.72 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=42.7
Q ss_pred cEECCCCEECCCcEEe---ceEECCCCEECCCcEEeceEECCCCEECCCc-EEeceEECCCcEECCCCEECCCCEECCCc
Q 007078 346 TVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC-ELRHVIVCDGVIMKAGAVLKPGVVLSFKV 421 (619)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~-~I~~siIg~~v~Ig~~~~I~~g~vIg~~v 421 (619)
..||+++.|++++.|. ...||++|.|+++|.|.... .+....... .....+||++|+|+.++.|.+|++|++++
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~--h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~ 81 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGS--HDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGA 81 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCC--CCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCC
Confidence 4455555555555552 46777777777777764210 000111111 12334456666666666666666666666
Q ss_pred EECCCCEE
Q 007078 422 VIGERFVV 429 (619)
Q Consensus 422 ~Ig~~~~i 429 (619)
.|+++++|
T Consensus 82 ~i~~gs~v 89 (107)
T cd05825 82 VVGARSVV 89 (107)
T ss_pred EECCCCEE
Confidence 66665554
No 199
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.80 E-value=9.6e-08 Score=94.00 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceE
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
.+.+.+||||+|.|+||.. ||+|+|++|+|||+|+++.|... +.+|+|+++. .+.+..... ..+
T Consensus 5 ~~~~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~---------~~~ 68 (200)
T PRK02726 5 KNNLVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP---------PGC 68 (200)
T ss_pred CCCceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc---------CCC
Confidence 3468999999999999974 89999999999999999999754 7899888764 333333221 123
Q ss_pred EEEeCCC-ccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHH
Q 007078 106 KTIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (619)
Q Consensus 106 ~~i~~~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~ 154 (619)
.++.... ..|...+++.... .+..+ ++++.||. +....+..+++.+.
T Consensus 69 ~~i~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 69 HWLREPPPSQGPLVAFAQGLP--QIKTEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred eEecCCCCCCChHHHHHHHHH--hCCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 4443322 2566666664432 34444 89999999 56667778887654
No 200
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.7e-08 Score=105.99 Aligned_cols=93 Identities=26% Similarity=0.403 Sum_probs=80.5
Q ss_pred CCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCE
Q 007078 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVV 416 (619)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~v 416 (619)
.++..|......-+.+.+...+.+.+|.|+.||.|.. .|.||+|+.+++|+.+|.|.+|+|.++|.||+||+|. .|+
T Consensus 271 d~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aI 347 (393)
T COG0448 271 DRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAI 347 (393)
T ss_pred CCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEE
Confidence 4555666667777788888888899999999999976 8999999999999999999999999999999999998 588
Q ss_pred ECCCcEECCCCEECCC
Q 007078 417 LSFKVVIGERFVVPAH 432 (619)
Q Consensus 417 Ig~~v~Ig~~~~i~~~ 432 (619)
|..+|+|++|++|+..
T Consensus 348 IDk~v~I~~g~~i~~~ 363 (393)
T COG0448 348 IDKNVVIGEGVVIGGD 363 (393)
T ss_pred eCCCcEeCCCcEEcCC
Confidence 8888888877777654
No 201
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.78 E-value=3.5e-08 Score=105.65 Aligned_cols=89 Identities=30% Similarity=0.397 Sum_probs=51.5
Q ss_pred ECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-----eceEECCCcEECCCC-
Q 007078 336 QSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-----RHVIVCDGVIMKAGA- 409 (619)
Q Consensus 336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-----~~siIg~~v~Ig~~~- 409 (619)
+.+++.+.+++.||++|.| .++ +|+.+|.||++|+|.+++|+++++||++|+| .+|+|+++++|+.++
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~-----~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~ 318 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNS-----VIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQA 318 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCC-----EEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcc
Confidence 3445566666666666666 444 4444445555555555555555555555555 566666666666653
Q ss_pred EECCCCEECCCcEECCCCEECC
Q 007078 410 VLKPGVVLSFKVVIGERFVVPA 431 (619)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~i~~ 431 (619)
.+. +++|+++++|++++.++.
T Consensus 319 ~~~-~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 319 RIV-DSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred eee-cCEEcCCCEECCCccccc
Confidence 443 577777777777766664
No 202
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.78 E-value=1.8e-08 Score=110.79 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=77.9
Q ss_pred ceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECC-------------------CCEECCCcEEeceEECCCCE
Q 007078 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE-------------------GCTIGSNVLIEGSYIWDNVI 387 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~-------------------~~~Ig~~~~I~~s~I~~~v~ 387 (619)
+.++++++.| ++|.|. +++||.+|.||++|.|.+|+|+. +|.||.+|.|.+++|+.+|.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 4789999988 788884 68999999999999999999965 79999999999999999999
Q ss_pred ECCCcEEeceE-ECCCcEECCCCEECCC-CEECCCcEECCCCE
Q 007078 388 IEDGCELRHVI-VCDGVIMKAGAVLKPG-VVLSFKVVIGERFV 428 (619)
Q Consensus 388 Ig~~~~I~~si-Ig~~v~Ig~~~~I~~g-~vIg~~v~Ig~~~~ 428 (619)
||++|+|.+.. +..-=.-..++.|+.| |+|+.++++.++++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (429)
T PRK02862 386 IGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTV 428 (429)
T ss_pred ECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCC
Confidence 99999995422 1111112235666666 66777777777765
No 203
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=98.77 E-value=9.5e-08 Score=97.28 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=79.5
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCC-hHHHHHHHHccCCCCCCC
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPN 102 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~ 102 (619)
....+.+||||+|.|+||.. ..||+|+|++|+|||.|+|+.+... ++++|+|++++. .+.++..+.. + +
T Consensus 21 ~~~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--~----~ 91 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--I----D 91 (252)
T ss_pred ccCceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--c----C
Confidence 34457899999999999963 5799999999999999999999985 899999999875 4455555433 1 1
Q ss_pred ceEEEEeCCCccCHHHHHHHHHhhcccCC-CEEEEeCCe----echhhHHHHHHHHHHh
Q 007078 103 FTVKTIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT----VSNMLLTQALQEHKER 156 (619)
Q Consensus 103 ~~I~~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~----i~~~~l~~~l~~H~~~ 156 (619)
..+.++..... -.+.++... ..+.. ..+|+.+|. +....+..+++.++..
T Consensus 92 ~~i~~v~gg~~--r~~SV~~gl--~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 92 VPLKFALPGKE--RQDSVFNGL--QEVDANSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred CceEEcCCCCc--hHHHHHHHH--HhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 23444432221 223333322 12332 345666663 5556778888877653
No 204
>PLN02694 serine O-acetyltransferase
Probab=98.76 E-value=3.4e-08 Score=100.79 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=46.7
Q ss_pred ceEEcCCcEECCCCEEcC--CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEE-eceEECCC
Q 007078 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG 402 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~ 402 (619)
++-+++++.|++++.|.. +++||++|.||++|.|. ++++|.. +..+...+++|+++|.||.||+| .++.||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 445666666666666653 45555555555555442 3333321 23334456788888888888877 34445555
Q ss_pred cEECCCCEEC
Q 007078 403 VIMKAGAVLK 412 (619)
Q Consensus 403 v~Ig~~~~I~ 412 (619)
++||+|++|.
T Consensus 237 a~IGAgSVV~ 246 (294)
T PLN02694 237 AKIGAGSVVL 246 (294)
T ss_pred CEECCCCEEC
Confidence 5555555444
No 205
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.75 E-value=1.5e-08 Score=90.54 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=81.0
Q ss_pred eecceEEcCCcEECCCCEEcC---CcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeceEECCCCE
Q 007078 324 ERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIWDNVI 387 (619)
Q Consensus 324 ~~~~i~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~~s~I~~~v~ 387 (619)
..++|.+...+.+..++.|.+ ++.+|..|+++.+++|+ +.+||+++.|+++|+++...|+..|.
T Consensus 30 GsQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh 109 (184)
T KOG3121|consen 30 GSQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVH 109 (184)
T ss_pred ccceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeE
Confidence 345677777777777777764 67888888888888875 46899999999999998888888777
Q ss_pred ECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCCc
Q 007078 388 IEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (619)
Q Consensus 388 Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~~ 439 (619)
+|.+|. ||.+|+|...|.|-+++++.+.+++|+.++++..+
T Consensus 110 ~Gknav-----------iGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p 150 (184)
T KOG3121|consen 110 LGKNAV-----------IGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNP 150 (184)
T ss_pred ecccee-----------EcCceEhhhheeccCCcccCcccccCCceEEcCCC
Confidence 766554 45556666666666778888888999999988765
No 206
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.75 E-value=2.7e-08 Score=109.24 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=62.9
Q ss_pred cEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007078 358 SKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432 (619)
Q Consensus 358 ~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~ 432 (619)
+.+.+|+||++|.| ++|.|.+|+||++|.||++|.|.+|+|+++|.||++|.|. +|+|+++|+|+++++|+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe-eEEECCCCEECCCCEECCC
Confidence 35678999999999 7899999999999999999999999999999999999996 6887777777777666544
No 207
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.74 E-value=8.5e-08 Score=96.49 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=79.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCCh--HHHHHHHHccCCCCCCCceEEE
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~--~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
|||||+|.++|| | +|+|+|++|+|||+|+++.+..++ +.+|+|+++... +.+.+++... .+.+
T Consensus 2 aiIlA~G~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~--------~v~~ 67 (233)
T cd02518 2 AIIQARMGSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL--------GVKV 67 (233)
T ss_pred EEEeeCCCCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc--------CCeE
Confidence 799999999999 4 599999999999999999999998 899999998764 6677766531 2334
Q ss_pred EeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHh
Q 007078 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
+..+...+.+..+..+. ....+ ++++.||. +....++.+++.++..
T Consensus 68 v~~~~~~~l~~~~~~~~---~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 68 FRGSEEDVLGRYYQAAE---EYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred EECCchhHHHHHHHHHH---HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 44433322222222111 12345 89999999 6666889999988763
No 208
>PRK10191 putative acyl transferase; Provisional
Probab=98.74 E-value=7.4e-08 Score=89.63 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=14.6
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
.||++++||.++.|.+++.||++++||++++
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~ 124 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSV 124 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence 3444444454444444444444444444444
No 209
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.74 E-value=9.7e-08 Score=97.01 Aligned_cols=98 Identities=16% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCCCEEcCCcEECCCCEECCCcEEe-ceEECCCC-EECCCcEEeceEECCCCEECCCcEEec-eEECC----C----cEE
Q 007078 337 SRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGC-TIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCD----G----VIM 405 (619)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~-~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~----~----v~I 405 (619)
..++.|.+...+--+++|++|++|. .++|..++ .||.. .| ++.|..+|.||++|.|.. +.|+. + +.|
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~I 228 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISI 228 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEE
Confidence 3344444444444444444444442 44444444 34443 23 344444555555554432 22222 3 444
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 406 KAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 406 g~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
|++|.|+.||.| ++.||++++|++|++|...
T Consensus 229 Ge~~~IGagA~I--GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 229 GERCLLGANSGL--GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred CCCcEECCCCEE--CeEECCCCEECCCCEEeCC
Confidence 444444444444 4445555555555544443
No 210
>PLN02739 serine acetyltransferase
Probab=98.73 E-value=4.8e-08 Score=101.58 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred eEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
.+||++|+||.|++|..++.||++++||+|++ ||+++++...|
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~P 304 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNP 304 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecC
Confidence 45677777777777766677777777777666 55666665543
No 211
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.73 E-value=1e-07 Score=83.12 Aligned_cols=61 Identities=26% Similarity=0.260 Sum_probs=32.8
Q ss_pred EEcCCcEECCCCEEcC--CcEECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCCEECCCcEE
Q 007078 329 YRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVL---IEGSYIWDNVIIEDGCEL 394 (619)
Q Consensus 329 ~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~---I~~s~I~~~v~Ig~~~~I 394 (619)
.+++++.|++++.|+. .++|++++.|+++ +.|+.++.|+.++. +..++|++++.|+.++.+
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~-----~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i 69 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDN-----CTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKI 69 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCC-----CEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEE
Confidence 3444444444444433 2344444444444 34566666666664 456667777777766666
No 212
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.72 E-value=1.7e-07 Score=94.24 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=80.1
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCC-hHHHHHHHHccCCCCCCCceE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~I 105 (619)
.+.+||||+|.|+||.- ..||+|+|++|+|||.|+++.+..+ ++.+|+|+++.. ...+.+++....+.. ..+
T Consensus 2 ~~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~---~~~ 75 (230)
T PRK13385 2 NYELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVAD---QRV 75 (230)
T ss_pred ceEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCC---Cce
Confidence 36789999999999963 4699999999999999999999986 589999998764 244555554422210 124
Q ss_pred EEEeCCCccCHHHHHHHHHhhcccC-CC-EEEEeCCe--echhhHHHHHHHHHHh
Q 007078 106 KTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHKER 156 (619)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~--i~~~~l~~~l~~H~~~ 156 (619)
.++.... +-.++++.... .+. .+ ++++.||. +....+..+++.++..
T Consensus 76 ~~v~~g~--~r~~sv~~gl~--~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 76 EVVKGGT--ERQESVAAGLD--RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred EEcCCCc--hHHHHHHHHHH--hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 4443222 22344443321 232 35 56667999 6666888999987653
No 213
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.71 E-value=5.8e-08 Score=92.56 Aligned_cols=93 Identities=31% Similarity=0.409 Sum_probs=54.8
Q ss_pred CcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCcEECCCC
Q 007078 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE---LRHVIVCDGVIMKAGA 409 (619)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~---I~~siIg~~v~Ig~~~ 409 (619)
++.|++.+.||+...|..++-| +||..+.||++|.|. .+|++|..-. -.+-.||++|.||+||
T Consensus 67 gieIhp~A~IG~g~fIdHg~Gv---------VIgeta~IGddv~I~-----~gVTLGgtg~~~g~RhPtIg~~V~IGagA 132 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGV---------VIGETAVIGDDVTIY-----HGVTLGGTGKESGKRHPTIGNGVYIGAGA 132 (194)
T ss_pred ceeeCCCCeECCceEEcCCceE---------EEcceeEECCCeEEE-----cceEecCCCCcCCCCCCccCCCeEECCCC
Confidence 4556666666666666654322 555555555555432 2233332211 2345667777777777
Q ss_pred EECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 410 VLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
.|..+-.||+|++||+|++ ||+++.+...|
T Consensus 133 kILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvP 166 (194)
T COG1045 133 KILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVP 166 (194)
T ss_pred EEEcceEECCCCEECCCceEccCCCCCceEecCc
Confidence 7777777777777777776 46666665544
No 214
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.71 E-value=9.8e-08 Score=88.98 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=30.0
Q ss_pred EeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
...++||++|+||.+|.|.+|++||++++||++++ +++++++...|
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~P 120 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNP 120 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecC
Confidence 34566677777777777777777777777777766 45555554443
No 215
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.70 E-value=6.2e-08 Score=99.41 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=74.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHC--------CCcEEEEEccCChHHHHHHHHccCCC
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------GVAEVFVFCCAHSKQVIDYLENSEWF 98 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~--------Gv~eI~vv~~~~~~~i~~~l~~~~~~ 98 (619)
-+||||+|.||||. .+.||+|+||+ |+|+|+|.++.+... +|..+++...+..+.+++|+++..+.
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 47999999999995 68999999999 999999999999873 45555444445578899999986521
Q ss_pred CCCCceEEEEeCCCccCHHHHHHHHHhhcccC-CCEEEEeCCeechhhHHHHHHHHHHh
Q 007078 99 SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKER 156 (619)
Q Consensus 99 ~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~H~~~ 156 (619)
.+..+.+.....+....+....+.. ..+ .-+..-+||++..+..+.+++.|+++
T Consensus 79 --~~~v~~f~Q~~~P~~~~~~~~~~~~--~~~~~~~P~GnGdi~~~L~~sglLd~l~~~ 133 (266)
T cd04180 79 --NSYVITFMQGKLPLKNDDDARDPHN--KTKCHLFPCGHGDVVLALIHSGHLNKLLEK 133 (266)
T ss_pred --CCceEEEEeCCceEEeCCCCcccCC--CCceeeccCCcHHHHHHHHHCChHHHHHHc
Confidence 1122222222222222222221111 011 11444556666666666666666665
No 216
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.69 E-value=1.8e-08 Score=90.86 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=87.9
Q ss_pred eEEcCCcEECCCCEEcCCcEECCCCEECCCcEE----eceEECCCCEECCCcEEec--------------eEECCCCEEC
Q 007078 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIEG--------------SYIWDNVIIE 389 (619)
Q Consensus 328 i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I----~~svIG~~~~Ig~~~~I~~--------------s~I~~~v~Ig 389 (619)
+-+.+++.+.-.+.|.+.+.|+++|+|++.+++ ++.+||.||.|.+.+.|.| -+||.+....
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 556777777777788899999999999999988 4899999999999998864 3577777777
Q ss_pred CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007078 390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (619)
Q Consensus 390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v 435 (619)
=+|......+|++.+|+..|.+++||.+.++|.||+++.+-..-++
T Consensus 89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~l 134 (190)
T KOG4042|consen 89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNL 134 (190)
T ss_pred eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEeccccc
Confidence 7788888888998888888888888888888888887765433333
No 217
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.69 E-value=1.7e-07 Score=82.73 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=18.3
Q ss_pred ceEEcCCcEECCCCEEc--CCcEECCCCEECCCcEE
Q 007078 327 GMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKI 360 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~--~~~~Ig~~~~Ig~~~~I 360 (619)
++.+++++.|++++.|. +.+.||++|.|++++.|
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I 38 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYL 38 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEe
Confidence 35556666666665553 24555555555555544
No 218
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.68 E-value=8.2e-08 Score=104.87 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=62.9
Q ss_pred EEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007078 359 KISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (619)
Q Consensus 359 ~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~ 431 (619)
.+.+++||++|.|+ ++.|.+|+|+++|.|+++|+|.+|+|+++|.|+++|.|. +|+|+++++|+++++|..
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence 45689999999998 999999999999999999999999999999999999997 588888888887776654
No 219
>PRK10191 putative acyl transferase; Provisional
Probab=98.67 E-value=1.7e-07 Score=87.20 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=4.9
Q ss_pred EcCCcEECCCCEE
Q 007078 330 RALEIEQSRSAQV 342 (619)
Q Consensus 330 ~~~~~~i~~~~~I 342 (619)
++.++.+++++.|
T Consensus 44 I~~~a~Ig~~~~I 56 (146)
T PRK10191 44 IQAAATIGRRFTI 56 (146)
T ss_pred cCCCCEECCCeEE
Confidence 3333333333333
No 220
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.66 E-value=3.1e-07 Score=98.75 Aligned_cols=113 Identities=14% Similarity=0.186 Sum_probs=77.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEE
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~ 107 (619)
.+.+||||+|.|+||. ..||+|+|++|+|||+|+++.+.. .+.+|+|++....+.+..++.. +.+..
T Consensus 5 ~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~--------~~~i~ 71 (366)
T PRK14489 5 QIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG--------LPVYP 71 (366)
T ss_pred CceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC--------CcEEe
Confidence 5889999999999995 249999999999999999999986 4999998777655555544322 22211
Q ss_pred EeCCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHH
Q 007078 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (619)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~ 155 (619)
-......|....++.... .+..+ ++++.||. +....+..+++.++.
T Consensus 72 d~~~g~~G~~~si~~gl~--~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 72 DILPGFQGPLSGILAGLE--HADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred cCCCCCCChHHHHHHHHH--hcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 111222455555554332 24445 89999997 555566777776543
No 221
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=8.9e-08 Score=95.36 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=56.4
Q ss_pred ceeeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECC
Q 007078 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED 390 (619)
Q Consensus 321 ~~~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~ 390 (619)
-...|...|+++++++.+.++|-=++.++++|+|.-.+.++ ..+||+||.||.++.|.+ ++|++||.||.
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 34667889999999999988887788999999998877775 678999999999999875 34555555554
Q ss_pred Cc
Q 007078 391 GC 392 (619)
Q Consensus 391 ~~ 392 (619)
++
T Consensus 194 ns 195 (271)
T COG2171 194 NS 195 (271)
T ss_pred cc
Confidence 44
No 222
>PLN02739 serine acetyltransferase
Probab=98.65 E-value=1e-07 Score=99.18 Aligned_cols=38 Identities=26% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
...++||++|+|+.|++|..+++||++++|++|++|..
T Consensus 255 ~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 255 DRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 35789999999999999998999999999999999875
No 223
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.65 E-value=1.2e-06 Score=87.61 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=122.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEe
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~ 109 (619)
|||+|.|.++||. .|.|+|++|+|||.|+++.+.+++ +++|+|.+.. +.+.++..+. +..+.+..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~~------g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKSY------GASVPFLR 67 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHHc------CCEeEEeC
Confidence 7999999999994 699999999999999999999987 6777664432 4566655531 23333321
Q ss_pred ----CCCccCHHHHHHHHHhhc--ccCCC-EEEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcC
Q 007078 110 ----SHNIISAGDALRLIYEQN--VIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (619)
Q Consensus 110 ----~~~~~~~gdalr~~~~~~--~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (619)
.....+..++++.....- .-..| |+++.+|. +...++..+++.+++. ++...+-+.+.... +
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~-----~~ds~~sv~~~~~~----~ 138 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP-----NAHFVFSVTSFAFP----I 138 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEeeccCCC----h
Confidence 123456777777654321 01235 88899998 5666999999988762 24433444443211 1
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHh
Q 007078 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH 260 (619)
Q Consensus 181 ~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~d 260 (619)
.+ .+.++ ..+++..+..... ....-.+++ .-..+..+|+++++.+.-
T Consensus 139 ~~------~~~~~-~~g~~~~~~~~~~-~~~rQd~~~------------~y~~nga~y~~~~~~~~~------------- 185 (222)
T TIGR03584 139 QR------AFKLK-ENGGVEMFFPEHF-NTRSQDLEE------------AYHDAGQFYWGKSQAWLE------------- 185 (222)
T ss_pred HH------heEEC-CCCcEEecCCCcc-cCCCCCCch------------heeeCCeEEEEEHHHHHh-------------
Confidence 11 11222 2344433332110 000000000 012355699998875411
Q ss_pred hhhhhccccccCceEEEEEccccchhhccChhhHHHH
Q 007078 261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (619)
Q Consensus 261 fi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~ 297 (619)
.....|.+++.|+++.....+|+++.++.-+
T Consensus 186 ------~~~~~~~~~~~~~m~~~~~iDID~~~D~~~a 216 (222)
T TIGR03584 186 ------SGPIFSPHSIPIVLPRHLVQDIDTLEDWERA 216 (222)
T ss_pred ------cCCccCCCcEEEEeCccceeCCCCHHHHHHH
Confidence 0112467889999987789999999998765
No 224
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.65 E-value=2.1e-07 Score=88.48 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=17.4
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007078 403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (619)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~ 436 (619)
++||++|+|+++++|..+++||++++|+++++|.
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL 147 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence 4455555555555555555555555555555544
No 225
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-07 Score=94.95 Aligned_cols=74 Identities=23% Similarity=0.250 Sum_probs=66.0
Q ss_pred CEEcCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC
Q 007078 340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (619)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~ 413 (619)
+.|-+++.|.+.+.+.+.++|+ |..||.+++||++++|.+|+|.+++.|..|+.+.+|+||..+.||..+.|..
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence 3466778888888888888886 7889999999999999999999999999999999999999999999888863
No 226
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.61 E-value=1.4e-06 Score=91.89 Aligned_cols=166 Identities=13% Similarity=0.246 Sum_probs=106.3
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHCC-----------CcEEEEEcc-CChHHHH
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAAG-----------VAEVFVFCC-AHSKQVI 89 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~G-----------v~eI~vv~~-~~~~~i~ 89 (619)
.+..+.+||||+|.|||| +...||+|+||+ |+|++++.++.|...+ .-.++|+++ +..+.+.
T Consensus 12 ~~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 12 AEGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred hcCCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 355689999999999999 578899999998 7999999999999852 124568888 5578899
Q ss_pred HHHHccCCCCCCCceEEEEeC---------------------CCccCHHHHHHHHHhhcccC-----C-C-EEEEeCCee
Q 007078 90 DYLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTV 141 (619)
Q Consensus 90 ~~l~~~~~~~~~~~~I~~i~~---------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i 141 (619)
+|+++..|.....-.|+++.+ ..+-|-|+..+.+...+++. + . +.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 999986654321123443322 12358899888776655553 2 2 455566774
Q ss_pred -chhhHHHHHHHHHHhhccCCCceEEEE-EecCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 142 -SNMLLTQALQEHKERKKKDNNAVMTMI-IKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 142 -~~~~l~~~l~~H~~~~~~d~~a~mT~~-~~~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
...---.+|-.|..+ ++.|.+- +.+..+. .+-| +++.....-+|+.|.+.|.
T Consensus 169 L~~~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~-----ekvG----~l~~~~g~~~vvEysel~~ 222 (323)
T cd04193 169 LVKVADPVFIGFCISK-----GADVGAKVVRKRYPT-----EKVG----VVVLVDGKPQVVEYSEISD 222 (323)
T ss_pred cccccCHHHhHHHHHc-----CCceEEEEEECCCCC-----Ccee----EEEEECCeEEEEEeecCCH
Confidence 333223455555553 4666663 3333232 1223 3433223556778887764
No 227
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=7.8e-06 Score=79.61 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=145.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+.+-+||.|--.+|||.. |||-.|+|+|||.++.+...++|..+|+|-+.+ +.|.+...+. |..+.
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~------G~~av 67 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF------GGEAV 67 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh------CCEEE
Confidence 346678888888899974 999999999999999999999999999888865 6777777652 22332
Q ss_pred EEeCCCccCHHHHHHHHHhhcccCCC-E-EEEeCCe--echhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcc
Q 007078 107 TIESHNIISAGDALRLIYEQNVIHGD-F-VLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (619)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~d-f-Llv~gD~--i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (619)
.-...-..|+- -+.+...+--+..+ + +=+.||. |-...+..+++..++. .-.++|++.+...+. ..
T Consensus 68 mT~~~h~SGTd-R~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~----~~~~aTl~~~i~~~e-----e~ 137 (247)
T COG1212 68 MTSKDHQSGTD-RLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS----NADMATLAVKITDEE-----EA 137 (247)
T ss_pred ecCCCCCCccH-HHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC----CcceeeeeeecCCHH-----Hh
Confidence 22222233432 23333333223444 4 3377998 5555777777776664 246777777765532 22
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcCcchhHHHHhhh
Q 007078 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV 262 (619)
Q Consensus 183 ~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dnfd~q~~r~dfi 262 (619)
+. .+.|-++.+..++-|+|...|-|......- + ..-|...|||-+....|.-|..=-.-.-=+..-+
T Consensus 138 ~n-PN~VKvV~d~~g~ALYFSRs~iP~~rd~~~-~-----------~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~L 204 (247)
T COG1212 138 FN-PNVVKVVLDKEGYALYFSRAPIPYGRDNFG-G-----------TPFLRHIGIYAYRAGFLERFVALKPSPLEKIESL 204 (247)
T ss_pred cC-CCcEEEEEcCCCcEEEEEcCCCCCcccccC-C-----------cchhheeehHHhHHHHHHHHHhcCCchhHHHHHH
Confidence 33 233444444578999999877543211000 0 1224457899998888876643110000000001
Q ss_pred hhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 263 ~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
.. |.-...|.+|++.++++-....|++++++..+-+-+
T Consensus 205 EQ-LR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~ 242 (247)
T COG1212 205 EQ-LRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL 242 (247)
T ss_pred HH-HHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence 00 111236999999998866678999999988775543
No 228
>PLN02357 serine acetyltransferase
Probab=98.60 E-value=2.7e-07 Score=96.85 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred eEEcCCcEECCCCEEcC--CcEECCCCEECCCcEEeceEECCCCEECCC---cEEeceEECCCCEECCCcEE-eceEECC
Q 007078 328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSN---VLIEGSYIWDNVIIEDGCEL-RHVIVCD 401 (619)
Q Consensus 328 i~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~---~~I~~s~I~~~v~Ig~~~~I-~~siIg~ 401 (619)
+.+++++.|++++.|.. +++||++++||++|.| +.+|.||.. ....+++|+++|.||.|+.| .+..||+
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I-----~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGd 301 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSI-----LHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGE 301 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEE-----eCCceecCccccCCccCceeCCCeEECCceEEECCeEECC
Confidence 34445555554444442 3444444444444433 333333221 11234678888888888776 3455666
Q ss_pred CcEECCCCEECC
Q 007078 402 GVIMKAGAVLKP 413 (619)
Q Consensus 402 ~v~Ig~~~~I~~ 413 (619)
+++||+|++|..
T Consensus 302 ga~IGAgSVV~~ 313 (360)
T PLN02357 302 GAKIGAGSVVLK 313 (360)
T ss_pred CCEECCCCEECc
Confidence 666666655553
No 229
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.55 E-value=4.7e-07 Score=88.05 Aligned_cols=96 Identities=32% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCcEECCCCEECCCcEE---eceEECCCCEECCCcEEe-ceEECCCCEECC--CcEEeceEECCCcEECCCCEECCCCEE
Q 007078 344 SFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIE-GSYIWDNVIIED--GCELRHVIVCDGVIMKAGAVLKPGVVL 417 (619)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I---~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~--~~~I~~siIg~~v~Ig~~~~I~~g~vI 417 (619)
.++.+|.+|.++.++.+ .+..||+++.|+++|.|. ++..++...-.. ......++||++||||.+|+|.+|++|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 45566666666666664 366788888888888885 334443333332 223345788999999999999988888
Q ss_pred CCCcEECCCCE----ECCCCEEcCCc
Q 007078 418 SFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 418 g~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
|++++||++++ +|+++++...|
T Consensus 146 G~gavigagsVVtkdvp~~~iv~G~P 171 (190)
T COG0110 146 GEGAVIGAGSVVTKDVPPYGIVAGNP 171 (190)
T ss_pred CCCcEEeeCCEEeCccCCCeEEeCCc
Confidence 88888888877 56777776655
No 230
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.50 E-value=9.4e-07 Score=88.04 Aligned_cols=112 Identities=28% Similarity=0.358 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccCC-hHHHHHHHHccCCCCCCCceEE
Q 007078 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 29 lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+-|||+|+|.|+||.. ..||.+++++|+|+|.|+|+.+.+. .+++|+|++... .+.+++.+.+ .++.
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--------KKVK 69 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--------TTEE
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--------CCEE
Confidence 3589999999999985 6899999999999999999999985 789999998854 4666666655 1345
Q ss_pred EEeCCC--ccCHHHHHHHHHhhcccCCCEEEEeCC---eechhhHHHHHHHHHH
Q 007078 107 TIESHN--IISAGDALRLIYEQNVIHGDFVLISGD---TVSNMLLTQALQEHKE 155 (619)
Q Consensus 107 ~i~~~~--~~~~gdalr~~~~~~~i~~dfLlv~gD---~i~~~~l~~~l~~H~~ 155 (619)
++.... ..|+-.+|..+... .++++++== .++...+.++++..+.
T Consensus 70 iv~GG~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 70 IVEGGATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp EEE--SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 554322 23555555544321 267777632 2566677888887765
No 231
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.43 E-value=1.4e-06 Score=85.38 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=47.6
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCC-eehHHHHHHHHHHCCCcEEEEEccC
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA 83 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n-~PlI~y~Le~L~~~Gv~eI~vv~~~ 83 (619)
..+.+.+||||+|.++||.. ||+|+|++| +|||+|+++.+... +++|+|++++
T Consensus 5 ~~~~i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 5 MIDNIPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred cccCceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 34568899999999999975 999999999 99999999999877 8999888875
No 232
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.37 E-value=1.7e-06 Score=84.38 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
..|.+||||+|.++|| . +|+|++++|+|||+|+++.|....- .++|......++ |... + +.
T Consensus 3 ~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~-------g--~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF-------G--LP 63 (192)
T ss_pred CCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc-------C--Cc
Confidence 4689999999999999 4 8999999999999999999998865 555555544332 3322 1 22
Q ss_pred EEeCCCcc-CHHHHHHHHHhhcccCCC-EEEEeCCe-echh-hHHHHHHHHH
Q 007078 107 TIESHNII-SAGDALRLIYEQNVIHGD-FVLISGDT-VSNM-LLTQALQEHK 154 (619)
Q Consensus 107 ~i~~~~~~-~~gdalr~~~~~~~i~~d-fLlv~gD~-i~~~-~l~~~l~~H~ 154 (619)
++...... |.=.++... .....++ +++++||+ +... -+..++...+
T Consensus 64 vv~D~~~~~GPL~Gi~~a--l~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~ 113 (192)
T COG0746 64 VVPDELPGFGPLAGILAA--LRHFGTEWVLVLPCDMPFIPPELVERLLSAFK 113 (192)
T ss_pred eeecCCCCCCCHHHHHHH--HHhCCCCeEEEEecCCCCCCHHHHHHHHHhhc
Confidence 33322222 322233322 2223344 89999999 4444 4455554433
No 233
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.34 E-value=3.1e-06 Score=91.22 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=70.6
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceE
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
+..+.+||||+|.++||.. +|+|+|++|+|||+|+++.+.. .+.+|+|+++... ...+ .. ..+
T Consensus 172 ~~~i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~-~~~~vvV~~~~~~--~~~~-~~--------~~v 234 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRP-HCQEVFISCRAEQ--AEQY-RS--------FGI 234 (369)
T ss_pred cCCceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHh-hCCEEEEEeCCch--hhHH-hh--------cCC
Confidence 3557899999999999975 9999999999999999999976 4788888776542 2222 11 112
Q ss_pred EEEeCCC-ccCHHHHHHHHHhhcccC-CCEEEEeCCe--echhhHHHHHHH
Q 007078 106 KTIESHN-IISAGDALRLIYEQNVIH-GDFVLISGDT--VSNMLLTQALQE 152 (619)
Q Consensus 106 ~~i~~~~-~~~~gdalr~~~~~~~i~-~dfLlv~gD~--i~~~~l~~~l~~ 152 (619)
.++.... ..|...++..... ... ..++++.||+ +....+..+++.
T Consensus 235 ~~i~d~~~~~Gpl~gi~~al~--~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 235 PLITDSYLDIGPLGGLLSAQR--HHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred cEEeCCCCCCCcHHHHHHHHH--hCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 3333322 2353333443211 123 3489999999 444456666654
No 234
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.33 E-value=7.8e-07 Score=90.75 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=73.5
Q ss_pred ecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCc
Q 007078 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGV 403 (619)
Q Consensus 325 ~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v 403 (619)
.+++.+.+.+.++.+|.|+++++||++|+|+.|+.+.+|.|-.+..++.++.|..+.++.++.||.++.|. +++||++|
T Consensus 262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 35778888899999999999999999999999999999999999999999999999999999999999773 24444444
Q ss_pred EECCCCEEC
Q 007078 404 IMKAGAVLK 412 (619)
Q Consensus 404 ~Ig~~~~I~ 412 (619)
.|.+--.+.
T Consensus 342 ~V~d~~~vn 350 (371)
T KOG1322|consen 342 IVADEDYVN 350 (371)
T ss_pred EEecccccc
Confidence 444443333
No 235
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.1e-06 Score=84.77 Aligned_cols=92 Identities=27% Similarity=0.365 Sum_probs=53.8
Q ss_pred cEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEEC---CCcEEeceEECCCcEECCCCE
Q 007078 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIE---DGCELRHVIVCDGVIMKAGAV 410 (619)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig---~~~~I~~siIg~~v~Ig~~~~ 410 (619)
+-|+|.+.||.+..+...+ ..+||.-++||.+|. |+.++++| .++--++..||+||+||.|++
T Consensus 149 vdihpaa~ig~gilldhat---------gvvigeTAvvg~~vS-----ilH~Vtlggtgk~~gdrhP~Igd~vliGaGvt 214 (269)
T KOG4750|consen 149 VDIHPAAKIGKGILLDHAT---------GVVIGETAVVGDNVS-----ILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVT 214 (269)
T ss_pred ccccchhhcccceeecccc---------ceeecceeEecccee-----eecceeeccccccccccCCcccCCeEEccccE
Confidence 3455555555555444322 224444444444333 33333332 223334567888888888888
Q ss_pred ECCCCEECCCcEECCCCE----ECCCCEEcCCc
Q 007078 411 LKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (619)
Q Consensus 411 I~~g~vIg~~v~Ig~~~~----i~~~~~v~~~~ 439 (619)
|.++..||.|++|++|++ ||+++.....|
T Consensus 215 ILgnV~IGegavIaAGsvV~kDVP~~~~AvGnP 247 (269)
T KOG4750|consen 215 ILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNP 247 (269)
T ss_pred EeCCeeECCCcEEeccceEEeccCCCceecCCc
Confidence 888888888888888876 56666665554
No 236
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.30 E-value=1.1e-05 Score=80.29 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=76.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHC-CCcEEEEEccC-ChHHHHHHHHccCCCCCCCce
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~ 104 (619)
..+-|||+|+|+|+||.. ..||.+++++|+|||+|+|+.+..+ .+++|+|++.. ....+.++.... .+-.
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~-----~~~~ 74 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLS-----ADKR 74 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhc-----cCCe
Confidence 457799999999999997 8899999999999999999999997 57999999986 345555555311 1234
Q ss_pred EEEEeCCCc--cCHHHHHHHHHhhcccCCCEEEEeCCe---echhhHHHHHH
Q 007078 105 VKTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQ 151 (619)
Q Consensus 105 I~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~---i~~~~l~~~l~ 151 (619)
+..+..... .+.-.+|..+.. -..+++|++==. ++.-.+..+++
T Consensus 75 v~~v~GG~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~ 123 (230)
T COG1211 75 VEVVKGGATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIE 123 (230)
T ss_pred EEEecCCccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHH
Confidence 666643222 233333332211 124577666333 45557788884
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.30 E-value=4.2e-06 Score=77.99 Aligned_cols=91 Identities=22% Similarity=0.198 Sum_probs=59.2
Q ss_pred ECCCCEECC-CcEEe--ceEECCCCEECCCcEEece--EECCCC-----EECCC-----cEEeceEECCCcEECCCCEEC
Q 007078 348 IGYGTKIGS-NSKIS--DSVIGEGCTIGSNVLIEGS--YIWDNV-----IIEDG-----CELRHVIVCDGVIMKAGAVLK 412 (619)
Q Consensus 348 Ig~~~~Ig~-~~~I~--~svIG~~~~Ig~~~~I~~s--~I~~~v-----~Ig~~-----~~I~~siIg~~v~Ig~~~~I~ 412 (619)
||.++.|+. .+.+. .+.||++|.|+++|.|... .-..+. .+..+ .......+...+.||++|+|+
T Consensus 4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig 83 (145)
T cd03349 4 VGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIG 83 (145)
T ss_pred EeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEEC
Confidence 444444444 33332 5677777777777777422 111100 11111 122334456689999999999
Q ss_pred CCCEECCCcEECCCCEECCCCEEcCC
Q 007078 413 PGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 413 ~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
.+|+|..+++||++++|+++++|...
T Consensus 84 ~~~~i~~gv~Ig~~~vIgags~V~~~ 109 (145)
T cd03349 84 HGATILPGVTIGDGAVIAAGAVVTKD 109 (145)
T ss_pred CCCEEeCCCEECCCCEECCCCEEccc
Confidence 99999999999999999999999863
No 238
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.28 E-value=2e-05 Score=86.85 Aligned_cols=166 Identities=15% Similarity=0.264 Sum_probs=100.9
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHC------------C-CcEEEEEcc-CChHH
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA------------G-VAEVFVFCC-AHSKQ 87 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~------------G-v~eI~vv~~-~~~~~ 87 (619)
.+.++.+||||||.||||+ ...||+|+||+ |+||++++++.+... + .-.++|+++ +..+.
T Consensus 103 ~~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 103 KKGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred hcCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 4556999999999999996 48899999994 899999999999875 1 225667766 55788
Q ss_pred HHHHHHccCCCCCCCceEEEEeC----------------------CCccCHHHHHHHHHhhcccC-----C-C-EEEEeC
Q 007078 88 VIDYLENSEWFSQPNFTVKTIES----------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISG 138 (619)
Q Consensus 88 i~~~l~~~~~~~~~~~~I~~i~~----------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~g 138 (619)
+++|+++..|.....-.|.+..+ ..+-|.|+..+.+...+++. + . +.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 99999875543221112221111 12358899888876655543 2 2 455556
Q ss_pred Cee-chhhHHHHHHHHHHhhccCCC-ceEEEEEecCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 139 DTV-SNMLLTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 139 D~i-~~~~l~~~l~~H~~~~~~d~~-a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
|.+ ...---.+|-.+..++ . .+|+.+++. .+. .+-| ++......-.++.|.|.+.
T Consensus 260 DN~L~k~~DP~flG~~~~~~----~~~~~~kvvk~-~~~-----EkvG----~~~~~~g~~~vvEYsEi~~ 316 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFP----AHDVLNKCVKR-EDD-----ESVG----VFCLKDYEWQVVEYTEINE 316 (482)
T ss_pred CcccccccCHHHhHHHHHCC----chhheeeeecC-CCC-----Ccee----EEEEeCCcccEEEEeccCh
Confidence 775 3332234455555532 2 344444433 322 1223 4433222336788888654
No 239
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.24 E-value=7.8e-06 Score=79.45 Aligned_cols=76 Identities=32% Similarity=0.406 Sum_probs=61.7
Q ss_pred ceEECCCCEECCCcEEe---ceEECCCCEECCCcEEec--------------eEECCCcEECCCCEECCCCEECCCcEEC
Q 007078 362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH--------------VIVCDGVIMKAGAVLKPGVVLSFKVVIG 424 (619)
Q Consensus 362 ~svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~--------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig 424 (619)
+..+|.+|.|+.+|.+. +..|++++.++++|+|.. ......++||++|+|+.|++|.+||+||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 45778888888887752 566888888888888852 1113359999999999999999999999
Q ss_pred CCCEECCCCEEcC
Q 007078 425 ERFVVPAHSKVSL 437 (619)
Q Consensus 425 ~~~~i~~~~~v~~ 437 (619)
+|++|+++++++.
T Consensus 147 ~gavigagsVVtk 159 (190)
T COG0110 147 EGAVIGAGSVVTK 159 (190)
T ss_pred CCcEEeeCCEEeC
Confidence 9999999999987
No 240
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.22 E-value=8.8e-06 Score=86.54 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=74.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceE
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I 105 (619)
+..+-+||||+|.++||.. +|+|||+.|+|||+|+++.|... +++|+|+++... .. +. .+. .+
T Consensus 158 ~~~i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~---~~~-----~v 220 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GT---PLE-----NL 220 (346)
T ss_pred CCCceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hc---ccc-----CC
Confidence 4478999999999999975 99999999999999999998764 889988876431 11 10 010 12
Q ss_pred EEEeC-CCccCHHHHHHHHHhhcccCCCEEEEeCCe--echhhHHHHHHHH
Q 007078 106 KTIES-HNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (619)
Q Consensus 106 ~~i~~-~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~H 153 (619)
..+.. ....|...+++..... .-...+++++||+ +....+..+++.+
T Consensus 221 ~~I~D~~~~~GPlagI~aaL~~-~~~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 221 PTLPDRGESVGPISGILTALQS-YPGVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eEEeCCCCCCChHHHHHHHHHh-CCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 33332 2235666666654432 1124589999999 4444666766654
No 241
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.21 E-value=5.6e-06 Score=96.01 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=47.0
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcC
Q 007078 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (619)
Q Consensus 363 svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~ 437 (619)
+.||++|.|+++|.|......+++. .+.+++||++|+||.+|+|.+|++||++++||++++++++..+..
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~-----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~ 686 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVM-----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPA 686 (695)
T ss_pred eEECCCCEECCCCEEEecccccccc-----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCC
Confidence 5788888888888886433323322 234455677777777777777777777777777777766655543
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.19 E-value=6e-06 Score=95.71 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007078 362 DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (619)
Q Consensus 362 ~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~ 433 (619)
...||+||.|+++|.|.+..+..+. ..+...+||++|+||.+|+|.+|++||++++|++++.+.++.
T Consensus 131 li~IG~~~~I~~~v~l~~~~~~~~~-----l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~ 197 (695)
T TIGR02353 131 LLTIGAGTIVRKEVMLLGYRAERGR-----LHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQ 197 (695)
T ss_pred ceEECCCCEECCCCEEEcccCCCCc-----eeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCc
Confidence 5578888888888887654333222 123334667777777777777777777777777776655444
No 243
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.15 E-value=2.3e-06 Score=77.40 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=80.2
Q ss_pred eeecceEEcCCcEECCCCEEc---CCcEECCCCEECCCcEEec--------------eEECCCCEECCCcEEeceEECCC
Q 007078 323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD--------------SVIGEGCTIGSNVLIEGSYIWDN 385 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~--------------svIG~~~~Ig~~~~I~~s~I~~~ 385 (619)
-.|+.+.+++++.++|.+++. ++.+||+|+.|.+.+.|.+ .+||.+.+..-+|.....++|++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 457888899999999988775 5789999999999888854 46777777666666666667776
Q ss_pred CEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
..|+. .+.+|+||.+..||++|.+|.|-..-.+|+++.|...
T Consensus 102 NVies-----------kayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga 143 (190)
T KOG4042|consen 102 NVIES-----------KAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA 143 (190)
T ss_pred ceEee-----------eeEecCCcEEcCCceeccceEEecccccCCcceEEcc
Confidence 66654 4455677777777777788888888889999988753
No 244
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.03 E-value=1.5e-05 Score=76.19 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=49.7
Q ss_pred ceEEcCCcEECCCCEEc--CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEE-eceEECCC
Q 007078 327 GMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG 402 (619)
Q Consensus 327 ~i~~~~~~~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~ 402 (619)
++-|+++++|+++.+|. ..++||+.+.||++|.|. +++||..-.=.. -.+-.|+++|.||.|+.| .+..||+|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g---~RhPtIg~~V~IGagAkILG~I~IGd~ 143 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESG---KRHPTIGNGVYIGAGAKILGNIEIGDN 143 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCC---CCCCccCCCeEECCCCEEEcceEECCC
Confidence 44577777777777775 367888887777666543 333333221111 224578888888888876 33445555
Q ss_pred cEECCCCEEC
Q 007078 403 VIMKAGAVLK 412 (619)
Q Consensus 403 v~Ig~~~~I~ 412 (619)
+.||+|++|.
T Consensus 144 akIGA~sVVl 153 (194)
T COG1045 144 AKIGAGSVVL 153 (194)
T ss_pred CEECCCceEc
Confidence 5555555554
No 245
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.84 E-value=0.00036 Score=69.11 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEe
Q 007078 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (619)
Q Consensus 31 AVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~ 109 (619)
|||.|-+.++|+.- |.|+|++|+|||+|+++.+.+++ +++|+|.+.. +.+.+.+.+. +..+....
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~------g~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY------GAKVIFRR 67 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT------TSEEEE--
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc------CCeeEEcC
Confidence 78999999999984 99999999999999999999985 7898777764 5666666652 34565544
Q ss_pred CCCccCHHHHHHHHHhhcccCCC-EEEEeCCe--echhhHHHHHHHHHHhh
Q 007078 110 SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERK 157 (619)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~~~~ 157 (619)
.....++......+.....-..+ ++.+.||. +....+..+++.+++..
T Consensus 68 ~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 68 GSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred hhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 33333333222221111111233 67788898 44457889999888863
No 246
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00011 Score=71.39 Aligned_cols=59 Identities=25% Similarity=0.151 Sum_probs=45.1
Q ss_pred eEECCCCEECCCcEEeceEE--C-CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcCC
Q 007078 380 SYIWDNVIIEDGCELRHVIV--C-DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (619)
Q Consensus 380 s~I~~~v~Ig~~~~I~~siI--g-~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~v~~~ 438 (619)
.+|+++|+|..++++..+-= | ..-.||+||+|+.|++|-.|+.||+|++|++|++|...
T Consensus 175 Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD 236 (269)
T KOG4750|consen 175 AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD 236 (269)
T ss_pred eEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEec
Confidence 45666666666666654322 2 24489999999999999999999999999999999763
No 247
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.37 E-value=0.00058 Score=66.65 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=36.8
Q ss_pred CcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 357 NSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 357 ~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
++.++..++|+...+|++++|.+.++..+++|+.+|.+. +.+++.++.||+++.|....++...-.||+++.
T Consensus 28 nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~ 100 (277)
T COG4801 28 NSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVI 100 (277)
T ss_pred cceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceE
Confidence 333344456666666666666666666666666666553 344444555555555554333333333333333
No 248
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.29 E-value=0.04 Score=60.66 Aligned_cols=161 Identities=12% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHHHC----CCc-EEEEEccCC-hHHHHHHHHccCCCC
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFS 99 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~-n~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~ 99 (619)
.++-+|+||+|.||||.- ..||.|+|+. ++++++..++.+... |+. -.+|.++.. .+...+|+++..+..
T Consensus 78 ~k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSN 154 (469)
T ss_pred hcEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCc
Confidence 356789999999999985 7899999996 599999999888664 443 356777754 567888988754421
Q ss_pred CCCceEEEEeC------------------------CCccCHHHHHHHHHhhcccC-----C-C-EEEEeCCeechhhHHH
Q 007078 100 QPNFTVKTIES------------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQ 148 (619)
Q Consensus 100 ~~~~~I~~i~~------------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~ 148 (619)
..|++..| -.+-|-|+..+.+...+++. + . +.+.+.|.+...-=-.
T Consensus 155 ---~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 155 ---IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred ---cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 22222211 12347788877776555543 2 2 4556678865442223
Q ss_pred HHHHHHHhhccCCCceEEEEEec-CCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 149 ALQEHKERKKKDNNAVMTMIIKK-SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 149 ~l~~H~~~~~~d~~a~mT~~~~~-~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
++..|... ++.++|=+.+ ..+. .+-| +++.-...-+|+.|.+.|.
T Consensus 232 ~lg~~~~~-----~~e~~~ev~~Kt~~d-----~kgG----~l~~~dgk~~lvEysqvp~ 277 (469)
T PLN02474 232 ILNHLIQN-----KNEYCMEVTPKTLAD-----VKGG----TLISYEGKVQLLEIAQVPD 277 (469)
T ss_pred HHHHHHhc-----CCceEEEEeecCCCC-----CCcc----EEEEECCEEEEEEEecCCH
Confidence 55555553 4555554332 2221 1112 3332223566888888765
No 249
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.011 Score=57.56 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=122.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEE
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~ 106 (619)
+..-|||+|-|.++|.. -|-+.+++|+|||.|+++.+..++.-+-+|+... .+.|.+.-.+. |.++.
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD-s~~Il~~A~~y------gak~~ 68 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD-SEEILEEAKKY------GAKVF 68 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC-cHHHHHHHHHh------Ccccc
Confidence 35679999999999887 4889999999999999999999986554444444 35454444331 22332
Q ss_pred EE-----eCCCccCHHHHHHHHHhhcccCCC-EEEEeC--CeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCC
Q 007078 107 TI-----ESHNIISAGDALRLIYEQNVIHGD-FVLISG--DTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT 178 (619)
Q Consensus 107 ~i-----~~~~~~~~gdalr~~~~~~~i~~d-fLlv~g--D~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~ 178 (619)
.. .++...+.-.++..+.. ..+..+ .+++.+ -+....+++.+++.+.+.. .+++++.+=.+..|.
T Consensus 69 ~~Rp~~LA~D~ast~~~~lh~le~-~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~---~~sl~sa~e~e~~p~--- 141 (228)
T COG1083 69 LKRPKELASDRASTIDAALHALES-FNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ---YDSLFSAVECEHHPY--- 141 (228)
T ss_pred ccCChhhccCchhHHHHHHHHHHH-hccccCeeEEeccCccccchhHHHHHHHHHhcCC---CcceEEEeecccchH---
Confidence 11 12222233234444332 233344 666665 4488889999999998864 456655544433221
Q ss_pred cCcccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccc-eeEecCHHHHhhhhcCcchhHH
Q 007078 179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDC-YIDICSPEVLSLFTDNFDYQHL 257 (619)
Q Consensus 179 ~~~r~~~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~-gI~icsp~vl~lf~dnfd~q~~ 257 (619)
| .+.. ..+.+..+.+.|......-.+++ -+.+. -|||.+.++| ++.+
T Consensus 142 ---k------~f~~--~~~~~~~~~~~~~~~~rrQ~Lpk-------------~Y~~NgaiYi~~~~~l--~e~~------ 189 (228)
T COG1083 142 ---K------AFSL--NNGEVKPVNEDPDFETRRQDLPK-------------AYRENGAIYINKKDAL--LEND------ 189 (228)
T ss_pred ---H------HHHh--cCCceeecccCCccccccccchh-------------hhhhcCcEEEehHHHH--hhcC------
Confidence 1 1111 23566666665532222222222 22233 3888877653 1111
Q ss_pred HHhhhhhhccccccCceEEEEEccccchhhccChhhHHHHhHhh
Q 007078 258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (619)
Q Consensus 258 r~dfi~~vL~~~~~g~~I~~~~~~~~y~~~V~~~~sY~~~~~di 301 (619)
-.-+.....|+++..-..+|.+.+++.-+..-+
T Consensus 190 -----------~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 190 -----------CFFIPNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred -----------ceecCCceEEEcCcccccccccHHhHHHHHHHh
Confidence 112345566777766677899888877665443
No 250
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.19 E-value=0.00019 Score=49.90 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=14.9
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
.|+++++|++++.|.++++||++++|+++++|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34445555555554444444444444444443
No 251
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.16 E-value=0.00054 Score=47.21 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=10.3
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007078 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (619)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~i 429 (619)
||++|+||+++.| |..||++|.|++|++|
T Consensus 4 IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 3444444444444 2444444444444433
No 252
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.05 E-value=0.014 Score=60.75 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=99.6
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHHHC----CCc-EEEEEccCC-hHHHHHHHHccCCCCC
Q 007078 28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFSQ 100 (619)
Q Consensus 28 ~lqAVILA~g~gtRf~PlT~~~PK~LLPi~-n~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~~ 100 (619)
++-+|+||||-||||.- ..||.|+||. +++++++.++.+... |+. -.+|.++.. .+...+|+++..+..
T Consensus 3 kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~- 78 (300)
T cd00897 3 KLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVN- 78 (300)
T ss_pred cEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCc-
Confidence 46789999999999964 7899999996 599999999998764 432 467777765 567889988754311
Q ss_pred CCceEEEEe------------------------CCCccCHHHHHHHHHhhcccC-----C-C-EEEEeCCeechhhHHHH
Q 007078 101 PNFTVKTIE------------------------SHNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQA 149 (619)
Q Consensus 101 ~~~~I~~i~------------------------~~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~~ 149 (619)
..|.+.. .-.+-|-|+..+.+...+++. + . +.+.+.|.+...-=-.+
T Consensus 79 --~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~ 156 (300)
T cd00897 79 --VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI 156 (300)
T ss_pred --cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH
Confidence 1111110 112347888888776665552 2 2 56667898654322235
Q ss_pred HHHHHHhhccCCCceEEE-EEecCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 150 LQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 150 l~~H~~~~~~d~~a~mT~-~~~~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
+-.|..+ ++.++| ++.+..+. .+-| +++.....-+|+.|.+.|.
T Consensus 157 lg~~~~~-----~~~~~~evv~Kt~~d-----ek~G----~l~~~~g~~~vvEyse~p~ 201 (300)
T cd00897 157 LNHMVDN-----KAEYIMEVTDKTRAD-----VKGG----TLIQYEGKLRLLEIAQVPK 201 (300)
T ss_pred HHHHHhc-----CCceEEEEeecCCCC-----Cccc----EEEEECCEEEEEEeccCCH
Confidence 5556553 566666 34443332 1222 3443223456888888764
No 253
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.00 E-value=0.00086 Score=46.23 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=3.6
Q ss_pred ECCCCEECCCcE
Q 007078 365 IGEGCTIGSNVL 376 (619)
Q Consensus 365 IG~~~~Ig~~~~ 376 (619)
||++|.||.+|.
T Consensus 4 IG~~~~ig~~~~ 15 (34)
T PF14602_consen 4 IGDNCFIGANST 15 (34)
T ss_dssp E-TTEEE-TT-E
T ss_pred ECCCEEECcccc
Confidence 344444444333
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.98 E-value=0.00036 Score=48.53 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=12.2
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCE
Q 007078 404 IMKAGAVLKPGVVLSFKVVIGERFVVPAHSK 434 (619)
Q Consensus 404 ~Ig~~~~I~~g~vIg~~v~Ig~~~~i~~~~~ 434 (619)
+||++++|++++.|..+++||+++.|++++.
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~ 33 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVV 33 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCE
Confidence 3444444444444444444444444444333
No 255
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.90 E-value=0.0029 Score=61.93 Aligned_cols=90 Identities=10% Similarity=0.196 Sum_probs=61.6
Q ss_pred eeecceEEcCCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec-eEEC
Q 007078 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIVC 400 (619)
Q Consensus 323 ~~~~~i~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siIg 400 (619)
+....+....++.|++++.+ .-.++|+...+|+++.|...+++.+|.|+..|.+. |.....++.||.++.|.+ -++.
T Consensus 12 ~e~~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~ 90 (277)
T COG4801 12 VEEAIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVI 90 (277)
T ss_pred eeeeeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEe
Confidence 34445556666777777777 34477888888888888888888888888888875 566666677777766643 3344
Q ss_pred CCcEECCCCEECC
Q 007078 401 DGVIMKAGAVLKP 413 (619)
Q Consensus 401 ~~v~Ig~~~~I~~ 413 (619)
..-.||+++.|..
T Consensus 91 gdLdig~dV~Ieg 103 (277)
T COG4801 91 GDLDIGADVIIEG 103 (277)
T ss_pred cccccccceEEec
Confidence 4555555555553
No 256
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.78 E-value=0.015 Score=60.81 Aligned_cols=132 Identities=15% Similarity=0.304 Sum_probs=83.7
Q ss_pred EEEEEeCCCCCCCCCCCCCCCceeeee---CCeehHHHHHHHHHHCC--------C-cEEEEEccCC-hHHHHHHHHccC
Q 007078 30 QAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEAAG--------V-AEVFVFCCAH-SKQVIDYLENSE 96 (619)
Q Consensus 30 qAVILA~g~gtRf~PlT~~~PK~LLPi---~n~PlI~y~Le~L~~~G--------v-~eI~vv~~~~-~~~i~~~l~~~~ 96 (619)
-+|+||+|-||||.- +.||.++|+ .+++++++.++.+.... + --.+|.++.. .+..++++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 368999999999985 789999999 47999999999987642 1 2467888854 678999998876
Q ss_pred CCCCCCceEEEE------------------eC------CCccCHHHHHHHHHhhcccC-----C-CEEEEeC-Ce-echh
Q 007078 97 WFSQPNFTVKTI------------------ES------HNIISAGDALRLIYEQNVIH-----G-DFVLISG-DT-VSNM 144 (619)
Q Consensus 97 ~~~~~~~~I~~i------------------~~------~~~~~~gdalr~~~~~~~i~-----~-dfLlv~g-D~-i~~~ 144 (619)
|.....-.|++. .. ..+-|-|+..+.+...+++. + .++.+.+ |. +...
T Consensus 79 yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~ 158 (315)
T cd06424 79 YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK 158 (315)
T ss_pred ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence 643211122211 11 12458899888887666653 2 3555554 44 3333
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEE
Q 007078 145 LLTQALQEHKERKKKDNNAVMTMII 169 (619)
Q Consensus 145 ~l~~~l~~H~~~~~~d~~a~mT~~~ 169 (619)
-.--++-.+..+ ++.|...+
T Consensus 159 adP~fiG~~~~~-----~~d~~~k~ 178 (315)
T cd06424 159 AIPAVLGVSATK-----SLDMNSLT 178 (315)
T ss_pred cChhhEEEEecC-----CCceEeEE
Confidence 333444444443 45555433
No 257
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.61 E-value=0.006 Score=58.63 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCceeeeeCC--eehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHH---
Q 007078 49 RPKVLLPLVN--VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLI--- 123 (619)
Q Consensus 49 ~PK~LLPi~n--~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~--- 123 (619)
.+|+|+|+.| +|||+|+++.+. ..+.+|+|+++.+. .+ .. +.++++. +...+.|......
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~--------~~~~~i~-d~~~g~gpl~~~~~gl 67 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE--------LPAPVLR-DELRGLGPLPATGRGL 67 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc--------CCCCEec-cCCCCCCcHHHHHHHH
Confidence 4899999999 999999999876 56899999998642 11 11 1223332 2222333322211
Q ss_pred HhhcccCCC-EEEEeCCe--echhhHHHHHHHHH
Q 007078 124 YEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (619)
Q Consensus 124 ~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~H~ 154 (619)
.....-..+ +++++||+ |....+..+++.++
T Consensus 68 ~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 68 RAAAEAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred HHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 110011234 89999999 55556677776543
No 258
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=96.52 E-value=0.061 Score=59.64 Aligned_cols=198 Identities=11% Similarity=0.209 Sum_probs=113.3
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHC--------------CC-cEEEEEccCC-hH
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------------GV-AEVFVFCCAH-SK 86 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~--------------Gv-~eI~vv~~~~-~~ 86 (619)
..++-+|+||||.||||.- ..||.|+||+ ++++++...+.+... ++ =-.+|.++.. .+
T Consensus 114 ~gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred cCCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 4567788999999999985 7899999886 799999999987542 11 1457888854 57
Q ss_pred HHHHHHHccCCCCCCCceEEEEeC---------------------CCccCHHHHHHHHHhhcccC-----C-CEE-EEeC
Q 007078 87 QVIDYLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-DFV-LISG 138 (619)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~I~~i~~---------------------~~~~~~gdalr~~~~~~~i~-----~-dfL-lv~g 138 (619)
..++|+++..+.....-.|++..+ ..+-|.|+..+.+...+++. + .++ +.+.
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 270 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGV 270 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 789999875543211112333221 13458899988887666653 2 244 4456
Q ss_pred Cee-chhhHHHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcCcccCCCceEEEEe--CCCCeEEEeeecCCCCCcceE
Q 007078 139 DTV-SNMLLTQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAID--PNTKQLLYYEDKADHSKGTIC 214 (619)
Q Consensus 139 D~i-~~~~l~~~l~~H~~~~~~d~~a~mT~-~~~~~~~~~~~~~~r~~~~~~vv~~d--~~~~rvl~~~ekp~~~~~~~~ 214 (619)
|.+ ...---.+|-.+..+ ++.+.+ ++++..+. .+-| ++... ...-.|+.|.+.+..
T Consensus 271 DN~L~~~~DP~flG~~~~~-----~~d~~~kVv~K~~~~-----EkvG----~i~~~~~~g~~~vvEYsEl~~~------ 330 (493)
T PLN02435 271 DNALVRVADPTFLGYFIDK-----GVASAAKVVRKAYPQ-----EKVG----VFVRRGKGGPLTVVEYSELDQA------ 330 (493)
T ss_pred ccccccccCHHHHHHHHhc-----CCceEEEeeecCCCC-----Ccee----EEEEecCCCCEEEEEeccCCHH------
Confidence 774 333223455555553 455554 33333332 1222 44432 123447777776531
Q ss_pred eehhhhhc-CC-ceEEEeccccceeEecCHHHHhhhhc
Q 007078 215 LDKMLLAE-NP-SISLHNDKQDCYIDICSPEVLSLFTD 250 (619)
Q Consensus 215 i~~~l~~~-~~-~~~i~~dL~d~gI~icsp~vl~lf~d 250 (619)
+-.. .+ .=.+........+++||-+.|..+.+
T Consensus 331 ----~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 331 ----MASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ----HHhccCccccccccchhhHHHhhccHHHHHHHHH
Confidence 1000 00 01233344455566788887776643
No 259
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.32 E-value=0.015 Score=69.06 Aligned_cols=138 Identities=17% Similarity=0.090 Sum_probs=75.6
Q ss_pred CEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcCcccCCCceEEEEeCCC-CeEEEeeecCCCCC
Q 007078 132 DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT-KQLLYYEDKADHSK 210 (619)
Q Consensus 132 dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~~~~~~vv~~d~~~-~rvl~~~ekp~~~~ 210 (619)
-.|+.+||++..++ ..+.. -+++.+..+.....+. -.+..| ||+.|.++ ++|..+-.||...
T Consensus 154 g~li~~gDv~~~f~--~~~~~-------~~~~~~~~~~~~~~~~---~~~~HG----Vfv~~~~~~~~~~~~LqKps~e- 216 (974)
T PRK13412 154 HTLIASGDVYIRSE--QPLQD-------IPEADVVCYGLWVDPS---LATNHG----VFVSSRKSPERLDFMLQKPSLE- 216 (974)
T ss_pred ceEEEecchhhhcc--ccccC-------CCccCeEEEEeccChh---hccCce----EEEeCCCChHHHHHHhcCCCHH-
Confidence 48999999855442 11110 1223333333333332 122333 89888753 6788888887521
Q ss_pred cceEeehhhhhcCCceEEEeccccceeEecCHHHHhhhhcC-c-------chhHHHHhhhhhhc-----c-ccccCceEE
Q 007078 211 GTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-F-------DYQHLRRHFVKGLL-----L-DDIMGYKIF 276 (619)
Q Consensus 211 ~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~lf~dn-f-------d~q~~r~dfi~~vL-----~-~~~~g~~I~ 276 (619)
.+ ..+... ..-|+|+||++++....+.+..- + -+-++-.||+..+= . .++++.++.
T Consensus 217 -el---~a~~~~------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~ 286 (974)
T PRK13412 217 -EL---GGLSKT------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVA 286 (974)
T ss_pred -HH---HhhhcC------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceE
Confidence 11 122222 34578999999999888755421 1 01133457775432 1 256666776
Q ss_pred EEEccccchhhccChhhHHH
Q 007078 277 THEIHSSYAARIDNYRSYDI 296 (619)
Q Consensus 277 ~~~~~~~y~~~V~~~~sY~~ 296 (619)
...+++.-...++|-+.|..
T Consensus 287 i~~L~~~~F~H~GTs~E~l~ 306 (974)
T PRK13412 287 ILPLPGGEFYHYGTSRELIS 306 (974)
T ss_pred EEEcCCceeEEecCcHHHhc
Confidence 66776655566677666653
No 260
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.064 Score=52.68 Aligned_cols=110 Identities=23% Similarity=0.373 Sum_probs=73.7
Q ss_pred eEEEEEeCCC-CCCCCCCCCCCCceeeeeCCeehHHHHHHHHHHCC-CcEEEEEccCC--hHHHHHHHHccCCCCCCCce
Q 007078 29 LQAILLADSF-TTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAH--SKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 29 lqAVILA~g~-gtRf~PlT~~~PK~LLPi~n~PlI~y~Le~L~~~G-v~eI~vv~~~~--~~~i~~~l~~~~~~~~~~~~ 104 (619)
+-++|+.+-. ++|+. -|.|+|+++.|||+|+|+.+.++. +.+++|.++.. .+.++.+..+. |+.
T Consensus 3 ~I~~IiQARmgStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~------G~~ 70 (241)
T COG1861 3 MILVIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH------GFY 70 (241)
T ss_pred cEEEEeeecccCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc------Cee
Confidence 4556666654 46665 599999999999999999999985 68899988853 35677777652 232
Q ss_pred EEEEeCCCccCHHHHHHHH-HhhcccCCC-EEEEeCCe-echhh-HHHHHHHHHHh
Q 007078 105 VKTIESHNIISAGDALRLI-YEQNVIHGD-FVLISGDT-VSNML-LTQALQEHKER 156 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~-~~~~~i~~d-fLlv~gD~-i~~~~-l~~~l~~H~~~ 156 (619)
+ .. .+..++|.-+ .+-.....+ ++=+.||. +.+.. +..+++.|-++
T Consensus 71 v--fr----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ 120 (241)
T COG1861 71 V--FR----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEK 120 (241)
T ss_pred E--ec----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence 2 21 2345555433 233444556 45589998 55554 46778888774
No 261
>PLN02830 UDP-sugar pyrophosphorylase
Probab=95.96 E-value=0.21 Score=57.13 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHC--------C---C-cEEEEEccCC-hHHHHH
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------G---V-AEVFVFCCAH-SKQVID 90 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~--------G---v-~eI~vv~~~~-~~~i~~ 90 (619)
.++-+|+||+|.||||.- ..||.+||++ |+++++..++.+... + + --.+|.++.. .+...+
T Consensus 127 ~kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 356779999999999985 6799999983 799999999998664 1 1 2467888854 577899
Q ss_pred HHHccCCCCCCCceEEEEe----------------CC--------CccCHHHHHHHHHhhcccC-----C-CEEE-EeCC
Q 007078 91 YLENSEWFSQPNFTVKTIE----------------SH--------NIISAGDALRLIYEQNVIH-----G-DFVL-ISGD 139 (619)
Q Consensus 91 ~l~~~~~~~~~~~~I~~i~----------------~~--------~~~~~gdalr~~~~~~~i~-----~-dfLl-v~gD 139 (619)
|+++..|.....-.|++.. .. .+-|-|+..+.+...+++. + .+++ ...|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 9998776432111222211 11 3357888888887666653 2 3444 4456
Q ss_pred e-echhhHHHHHHHHHHhhccCCCceEEEEEec
Q 007078 140 T-VSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (619)
Q Consensus 140 ~-i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~ 171 (619)
. +...-.-.+|-.+..+ ++.|.+-+.+
T Consensus 284 N~L~~~Adp~flG~~~~~-----~~d~~~kvv~ 311 (615)
T PLN02830 284 NGLVFKAIPAALGVSATK-----GFDMNSLAVP 311 (615)
T ss_pred chhhhcccHHHhHHHHhc-----CCceEEEEEE
Confidence 6 3323335566666664 4555554443
No 262
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.12 Score=56.26 Aligned_cols=164 Identities=17% Similarity=0.302 Sum_probs=94.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHHHC----CCc-EEEEEccCChHHHHHHHHccCCCC
Q 007078 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAHSKQVIDYLENSEWFS 99 (619)
Q Consensus 26 ~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~-n~PlI~y~Le~L~~~----Gv~-eI~vv~~~~~~~i~~~l~~~~~~~ 99 (619)
..++-+|+||||.|+||.- ..||.|++|. |+++++...+.+..+ ++. ..+|.++...++-..|+....+..
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 5678889999999999986 6799999999 899999999988765 443 456777755545555554422211
Q ss_pred ----------CCCce-E-----EEEe-C------CCccCHHHHHHHHHhhccc-----CC-CE-EEEeCCeechh-hHHH
Q 007078 100 ----------QPNFT-V-----KTIE-S------HNIISAGDALRLIYEQNVI-----HG-DF-VLISGDTVSNM-LLTQ 148 (619)
Q Consensus 100 ----------~~~~~-I-----~~i~-~------~~~~~~gdalr~~~~~~~i-----~~-df-Llv~gD~i~~~-~l~~ 148 (619)
++.+. + .++. + -.+-|.|+..+.+...+.+ ++ .+ .|.+.|.+.-. |+ .
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~-~ 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL-K 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-H
Confidence 11111 0 1111 1 1234777777666543332 23 34 44567884432 33 3
Q ss_pred HHHHHHHhhccCCCceEEEEEec-CCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 149 ALQEHKERKKKDNNAVMTMIIKK-SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 149 ~l~~H~~~~~~d~~a~mT~~~~~-~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
++..|... ++..+|=+.. ..+. .+-| ..+.+|. .-||+.|.+.|.
T Consensus 259 ~lg~~~~~-----~~e~~~e~t~Kt~a~-----ekvG---~Lv~~~g-~~rllEysev~~ 304 (472)
T COG4284 259 FLGFMAET-----NYEYLMETTDKTKAD-----EKVG---ILVTYDG-KLRLLEYSEVPN 304 (472)
T ss_pred HHHHHHhc-----CcceeEEEeeccccc-----ccce---EEEEeCC-ceEEEEEecCCh
Confidence 45555553 3444433322 1111 1222 2344764 589999999876
No 263
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=95.11 E-value=0.5 Score=51.78 Aligned_cols=163 Identities=20% Similarity=0.303 Sum_probs=97.2
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHHHC----CCc-EEEEEccCC-hHHHHHHHHccCC
Q 007078 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEW 97 (619)
Q Consensus 25 ~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~-n~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~ 97 (619)
...++-+|+||||-||||.- ..||.|+||. ++.+++..++.+... |+. -.+|.++.. .+..++|+++ .+
T Consensus 53 ~~~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yf 128 (420)
T PF01704_consen 53 ALGKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YF 128 (420)
T ss_dssp HTTCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GC
T ss_pred hhCCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hc
Confidence 34568889999999999985 7899999996 589999999988762 433 467777754 6778888887 22
Q ss_pred CCCCCceEEE----------------EeCCC----------ccCHHHHHHHHHhhcccC-----C-C-EEEEeCCeechh
Q 007078 98 FSQPNFTVKT----------------IESHN----------IISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNM 144 (619)
Q Consensus 98 ~~~~~~~I~~----------------i~~~~----------~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~ 144 (619)
.... .|.+ +.... +-|-|+..+.+...+++. + . +.+.+.|.+...
T Consensus 129 g~~~--~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~ 206 (420)
T PF01704_consen 129 GLDV--DVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAV 206 (420)
T ss_dssp GSSC--CEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-T
T ss_pred CCCc--ceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccc
Confidence 1111 1221 11111 338899888876665543 2 3 566678986655
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEEe-cCCCCCCCcCcccCCCceEEEEeCCCCeEEEeeecCC
Q 007078 145 LLTQALQEHKERKKKDNNAVMTMIIK-KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (619)
Q Consensus 145 ~l~~~l~~H~~~~~~d~~a~mT~~~~-~~~~~~~~~~~r~~~~~~vv~~d~~~~rvl~~~ekp~ 207 (619)
-=-.++..|..+ ++.+.|=+. +..+. .+-| ++......-+|+.|.+.|.
T Consensus 207 ~Dp~~lG~~~~~-----~~~~~~evv~Kt~~d-----ek~G----vl~~~~G~~~vvEysqip~ 256 (420)
T PF01704_consen 207 VDPVFLGYMIEK-----NADFGMEVVPKTSPD-----EKGG----VLCRYDGKLQVVEYSQIPK 256 (420)
T ss_dssp T-HHHHHHHHHT-----T-SEEEEEEE-CSTT-----TSSE----EEEEETTEEEEEEGGGS-H
T ss_pred cCHHHHHHHHhc-----cchhheeeeecCCCC-----Ccee----EEEEeCCccEEEEeccCCH
Confidence 333466666654 344444333 33222 1222 4443333566778877764
No 264
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.94 E-value=0.13 Score=50.07 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=58.9
Q ss_pred CeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcccCC-CEEEE
Q 007078 58 NVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHG-DFVLI 136 (619)
Q Consensus 58 n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv 136 (619)
-+|||.|+++.+..+++.+++|+++. +.+..++.. ..+.++.+... |++.+++.......-.. .++++
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~--------~~v~~i~~~~~-G~~~si~~al~~~~~~~~~vlv~ 97 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN--------LGAPVLRDPGP-GLNNALNAALAEAREPGGAVLIL 97 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh--------cCCEEEecCCC-CHHHHHHHHHHHhhccCCeEEEE
Confidence 38999999999999988888888774 445555433 22344544433 88998886643311112 38999
Q ss_pred eCCe--echhhHHHHHHHHH
Q 007078 137 SGDT--VSNMLLTQALQEHK 154 (619)
Q Consensus 137 ~gD~--i~~~~l~~~l~~H~ 154 (619)
.||+ +....+..+++..+
T Consensus 98 ~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 98 MADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred eCCCCCCCHHHHHHHHHhcc
Confidence 9999 66668888887653
No 265
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=94.88 E-value=0.055 Score=59.29 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=27.9
Q ss_pred eEEEEeCCCC--------eEEEeeecCCCCCcceEeehhhhhcCCceEEEeccccceeEecCHHHHh
Q 007078 188 LFMAIDPNTK--------QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS 246 (619)
Q Consensus 188 ~vv~~d~~~~--------rvl~~~ekp~~~~~~~~i~~~l~~~~~~~~i~~dL~d~gI~icsp~vl~ 246 (619)
.|+.+|+++. .|..+..||... .+.-...++.. ..-++|+|+..++++..+
T Consensus 96 GVfv~~~~~~~~~~~~~~~v~~~L~KpS~e--em~~~~av~~~------~~~~ldsG~~~~s~~~~e 154 (414)
T PF07959_consen 96 GVFVLDRQGPDEEDLEYREVKDFLQKPSEE--EMRASGAVLPD------GNVLLDSGIVFFSSKAVE 154 (414)
T ss_pred eEEEeCCCCCccccchhhhHHHhhcCCCHH--HHHhCCcccCC------CcccccccceeccHHHHH
Confidence 4888887442 677777777521 00000111111 234558888888877665
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=94.08 E-value=0.094 Score=57.48 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred EECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEEC
Q 007078 353 KIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC 400 (619)
Q Consensus 353 ~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg 400 (619)
.+.+++.|-+|+|..+|.||++++|.+|.|+.++.||.+|.|.++-+.
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccc
Confidence 344455555666666666666666666666666666666666554443
No 267
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=92.93 E-value=1.1 Score=39.72 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=65.0
Q ss_pred eeeeCC-eehHHHHHHHHHHCC--CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
++|..| .++|.++++.+.+.+ ..+++|+.....+...+++...... ...+..+......|.+.++..... ..
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~--~~ 76 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DPRVIRVINEENQGLAAARNAGLK--AA 76 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CCCeEEEEecCCCChHHHHHHHHH--Hh
Confidence 456665 699999999999997 7899998887766666666542211 123555556677788888775432 23
Q ss_pred CCC-EEEEeCCeechhhH-HHHHHHHH
Q 007078 130 HGD-FVLISGDTVSNMLL-TQALQEHK 154 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~~l-~~~l~~H~ 154 (619)
..+ ++++.+|.+...+. ..++..+.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 567 78888999876654 44434333
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=81.03 E-value=6 Score=35.78 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred eeeeCCe-ehHHHHHHHHHHC--CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVNV-PMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n~-PlI~y~Le~L~~~--Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
++|.-|. ..|..+|+.|.+. ...+|+|+-....+...+.+++..- .+..+.++..+...|.+.++.... ...
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~---~~~~i~~i~~~~n~g~~~~~n~~~--~~a 77 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE---SDPNIRYIRNPENLGFSAARNRGI--KHA 77 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC---CSTTEEEEEHCCCSHHHHHHHHHH--HH-
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc---cccccccccccccccccccccccc--ccc
Confidence 5677774 8899999988887 4567877776543333333332100 124688888777778888877543 346
Q ss_pred CCC-EEEEeCCeechh-hHHHHHHHHHHh
Q 007078 130 HGD-FVLISGDTVSNM-LLTQALQEHKER 156 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~H~~~ 156 (619)
+++ ++++..|.+... -|..+++.+.+.
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 677 677889986655 478888888874
No 269
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=77.39 E-value=3.2 Score=49.98 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=18.9
Q ss_pred EeceEECCCCEECCC-cEEeceEECCCCEECCCcEEece
Q 007078 360 ISDSVIGEGCTIGSN-VLIEGSYIWDNVIIEDGCELRHV 397 (619)
Q Consensus 360 I~~svIG~~~~Ig~~-~~I~~s~I~~~v~Ig~~~~I~~s 397 (619)
|-+|+|..+|.++++ +.|++|+|+.+++||.+|.|.++
T Consensus 334 v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 334 VQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred EEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 445555555555554 22445555555555555555443
No 270
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=72.06 E-value=7.6 Score=33.46 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCEECCCcEEeceEECCCCEECCCcEEeceEEC-CCcEECCCCEECCCCEECCCcEECCCCE
Q 007078 368 GCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC-DGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (619)
Q Consensus 368 ~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg-~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (619)
...|+.+..|.+.+..+.+.|... +.+.+.. ..+.|...+.|. |-+-.....|..++.
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~-G~i~~~~l~v~~ga~ 94 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVE-GDITAGKLEVEGGAS 94 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEE-EEEEECEEEEeCCCE
Confidence 455555555554444444444322 3333333 334455555554 333333334444433
No 271
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=69.42 E-value=59 Score=30.75 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=59.1
Q ss_pred eeeeeCCee---hHHHHHHHHHHCC--CcEEEEEcc-CChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHh
Q 007078 52 VLLPLVNVP---MINYTLAWLEAAG--VAEVFVFCC-AHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (619)
Q Consensus 52 ~LLPi~n~P---lI~y~Le~L~~~G--v~eI~vv~~-~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~ 125 (619)
.++|+-|.. .|..+|+.+.... -.+++|+-. ...+...+.+.... .. ..+.++......|.+.|+.....
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~--~~--~~i~~i~~~~n~G~~~a~N~g~~ 77 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFK--RK--LPLKVVPLEKNRGLGKALNEGLK 77 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHH--hc--CCeEEEEcCccccHHHHHHHHHH
Confidence 367888764 8999999998864 356666543 32344444333211 11 23666665666788888765432
Q ss_pred hcccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 126 QNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..+++ ++++.+|.+... -|..+++...+
T Consensus 78 --~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 78 --HCTYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred --hcCCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 34678 566778875544 56666666543
No 272
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=68.51 E-value=63 Score=28.85 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=59.3
Q ss_pred eeeeCC-eehHHHHHHHHHHCC--CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
++|.-| ...|..+|+.+.+.. -.+++|+-....+...+.+... .......+.++......|.+.++..... ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~n~~~~--~~ 77 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEEL--AALYIRRVLVVRDKENGGKAGALNAGLR--HA 77 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHH--hccccceEEEEEecccCCchHHHHHHHH--hc
Confidence 456656 478888999998875 4577777655444333333331 1100123555556677788888875543 34
Q ss_pred CCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
+++ ++++.+|.+... -|..++..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 777 677888886555 45565455443
No 273
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.96 E-value=68 Score=28.84 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=60.5
Q ss_pred eeeeCC-eehHHHHHHHHHHCC--CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
++|.-| ..+|..+|+.|...- ..+++|+.....+...+.+.... -.+.++......|.+.|+.... ...
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~------~~~~~~~~~~~~g~~~a~n~~~--~~~ 73 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF------PEVRLIRNGENLGFGAGNNQGI--REA 73 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC------CCeEEEecCCCcChHHHhhHHH--hhC
Confidence 456555 688999999998873 45777777655555555554421 1366666667778888877543 334
Q ss_pred CCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
+.+ ++++-.|.+... .+..+++.+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 677 566667775544 46666665444
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=66.12 E-value=78 Score=31.23 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCCCCCCc--eeeeeCC-eehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccC
Q 007078 43 RPITLERPK--VLLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIIS 115 (619)
Q Consensus 43 ~PlT~~~PK--~LLPi~n-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~ 115 (619)
.+.....|+ .++|.-| ...|..+|+.+..... -|++|+.....+...+.+.+. ... .+.++......|
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~---~v~~i~~~~~~g 96 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREY--ADK---GVKLLRFPERRG 96 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHH--hhC---cEEEEEcCCCCC
Confidence 334445555 6777777 5678888888877532 267777765554444444431 110 356666666678
Q ss_pred HHHHHHHHHhhcccCCC-EEEEeCCeechhh-HHHHHHHH
Q 007078 116 AGDALRLIYEQNVIHGD-FVLISGDTVSNML-LTQALQEH 153 (619)
Q Consensus 116 ~gdalr~~~~~~~i~~d-fLlv~gD~i~~~~-l~~~l~~H 153 (619)
.+.++..... ..++| ++++.+|.+...+ |..+++..
T Consensus 97 ~~~a~n~gi~--~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 134 (251)
T cd06439 97 KAAALNRALA--LATGEIVVFTDANALLDPDALRLLVRHF 134 (251)
T ss_pred hHHHHHHHHH--HcCCCEEEEEccccCcCHHHHHHHHHHh
Confidence 8888775443 35678 7778899966554 66666655
No 275
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=66.04 E-value=28 Score=32.47 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCcEECCCCEEcCCcEECCCCEECCCcEEeceEECCC-CEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007078 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEG-CTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (619)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~-~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (619)
..+.|+.++.+.+........+|. + .+...+..++ +.|++..+|.+.+..+...|. |++..+....+.+.|..++.
T Consensus 22 ~~tli~~g~~f~G~l~f~~~l~Id-G-~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~ 98 (146)
T COG1664 22 PETLIGAGTTFKGELVFEGPLRID-G-TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGR 98 (146)
T ss_pred CCeEEecCCEEEEEEEecceEEEe-E-EEEEEEEeCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcE
Confidence 344555555554444444444442 2 4444455555 677777777665555555554 34444455556666666665
Q ss_pred ECCCCEECCCcEECCCCEECCCC
Q 007078 411 LKPGVVLSFKVVIGERFVVPAHS 433 (619)
Q Consensus 411 I~~g~vIg~~v~Ig~~~~i~~~~ 433 (619)
+. |-+-+....|..|+.+.-.+
T Consensus 99 v~-GdI~~~~i~v~~Ga~f~G~~ 120 (146)
T COG1664 99 VI-GDITTKEITVEEGAIFEGDC 120 (146)
T ss_pred Ee-eeecccEEEEccCCEEEeEE
Confidence 54 44444455566666554333
No 276
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=61.68 E-value=58 Score=33.59 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=62.0
Q ss_pred eeeeCCe--ehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhh
Q 007078 53 LLPLVNV--PMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (619)
Q Consensus 53 LLPi~n~--PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~ 126 (619)
++|.-|. ..|..+|+.+...-- .||+||-....+.....+...... ...-.+.++..+...|.+.|.-....
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~-~~~~~v~vi~~~~n~G~~~a~N~g~~- 80 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYK-KYLPKVKVLRLKKREGLIRARIAGAR- 80 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHh-hcCCcEEEEEcCCCCCHHHHHHHHHH-
Confidence 4677664 488999999886532 388888765444333333220000 00124777777777888887664432
Q ss_pred cccCCC-EEEEeCCeechh-hHHHHHHHHHHh
Q 007078 127 NVIHGD-FVLISGDTVSNM-LLTQALQEHKER 156 (619)
Q Consensus 127 ~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~~ 156 (619)
.-+++ ++++.+|++... -|..+++...+.
T Consensus 81 -~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 81 -AATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred -HccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 24678 677889996554 577888877653
No 277
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=61.48 E-value=57 Score=31.39 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=56.6
Q ss_pred eeeeCC-eehHHHHHHHHHHC------CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHh
Q 007078 53 LLPLVN-VPMINYTLAWLEAA------GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~------Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~ 125 (619)
++|.-| ...|..+|+.+.+. ..-||+|+-....+...+.++.. ....+..++++......|.+.|+....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~--~~~~~~~i~~i~~~~n~G~~~a~~~g~- 78 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKL--ARKNPALIRVLTLPKNRGKGGAVRAGM- 78 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHH--HHhCCCcEEEEEcccCCCcHHHHHHHH-
Confidence 456655 45667777777654 23578777654433333333221 000011256776667788898888543
Q ss_pred hcccCCC-EEEEeCCeechh-hHHHHHHHHH
Q 007078 126 QNVIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (619)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~ 154 (619)
...+++ ++++.+|..... .+..+++...
T Consensus 79 -~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~ 108 (211)
T cd04188 79 -LAARGDYILFADADLATPFEELEKLEEALK 108 (211)
T ss_pred -HHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 334678 577888986655 5677776633
No 278
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=58.76 E-value=1.1e+02 Score=28.61 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=58.3
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| ...|..+|+.+.+... -+|+|+.....+...+.+... +..+.........|.|.|+.......
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~------~~~~~~~~~~~~~gk~~aln~g~~~a 75 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA------GATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc------CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 567766 6788899999987643 467777655555555555432 12333333345567888877543321
Q ss_pred ---ccCCC-EEEEeCCeechhh-HHHHHHHHH
Q 007078 128 ---VIHGD-FVLISGDTVSNML-LTQALQEHK 154 (619)
Q Consensus 128 ---~i~~d-fLlv~gD~i~~~~-l~~~l~~H~ 154 (619)
.-+.+ ++++.+|.....+ |..++..+.
T Consensus 76 ~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~ 107 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNALEELNARFA 107 (183)
T ss_pred HhcCCCCCEEEEEcCCCCCChhHHHHHHHHHh
Confidence 12366 6778899977664 466666554
No 279
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=56.51 E-value=1.1e+02 Score=30.19 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=59.4
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| .-.|..+|+.+...-. -||+|+.....+...+.+++.. ......+..+......|.+.|+.....
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~--~~~~~~i~~~~~~~~~G~~~a~n~g~~-- 81 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALR--LPSIFRVVVVPPSQPRTKPKACNYALA-- 81 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhc--cCCCeeEEEecCCCCCchHHHHHHHHH--
Confidence 566655 4678888888887643 2676665544444444444311 111245555555555688888876543
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..++| ++++.+|.+... .|..+++...+
T Consensus 82 ~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 82 FARGEYVVIYDAEDAPDPDQLKKAVAAFAR 111 (241)
T ss_pred hcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence 35678 566788986655 55677776653
No 280
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=55.88 E-value=32 Score=37.93 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=50.8
Q ss_pred cccCCCeEEEEEeCCCCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHHHC----------CC-cEEEEEccCC-hHH
Q 007078 23 DLARQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA----------GV-AEVFVFCCAH-SKQ 87 (619)
Q Consensus 23 ~~~~~~lqAVILA~g~gtRf~PlT~~~PK~LLPi~---n~PlI~y~Le~L~~~----------Gv-~eI~vv~~~~-~~~ 87 (619)
...+....+|++|+|.|||+.- ..||.++|++ ++.+++...+.+... |. -..+|+++.. .+.
T Consensus 92 ~i~~~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~ 168 (477)
T KOG2388|consen 92 LIAEGKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEA 168 (477)
T ss_pred hhhcCcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHH
Confidence 3457778999999999999986 6799999998 466887776665432 22 2356677755 466
Q ss_pred HHHHHHccC
Q 007078 88 VIDYLENSE 96 (619)
Q Consensus 88 i~~~l~~~~ 96 (619)
..+|++...
T Consensus 169 T~~~f~~~~ 177 (477)
T KOG2388|consen 169 TLEYFESHK 177 (477)
T ss_pred hHhHHhhcC
Confidence 777777533
No 281
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=51.85 E-value=24 Score=30.29 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEEC-CCCEECCCcEEeceEECCCcEECCCCEEC
Q 007078 344 SFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIW-DNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (619)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~-~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (619)
++........|+.++.|...+-.+.+.|... +.+.+.. ..+.|...+.|...+..+...|..++.+.
T Consensus 29 G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 29 GNIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASIN 96 (101)
T ss_pred EEEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEE
Confidence 3333333445555555544444444444322 3333322 44566666666666666666666666554
No 282
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.28 E-value=1.1e+02 Score=28.46 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred eeeeCC-eehHHHHHHHHHHCCCc--EEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv~--eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
.+|.-| ...|..+|+.|.+.... ||+|+-....+...+.+.+... .+..+...+..|.+.++..... ..
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~~~~~~~~~~~g~~~a~n~~~~--~a 74 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------KITYWISEPDKGIYDAMNKGIA--LA 74 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------hcEEEEecCCcCHHHHHHHHHH--Hc
Confidence 355544 56788999999877554 7777755444555555544210 1223334556688888775433 34
Q ss_pred CCC-EEEEeCCee-chhhHHHHHHHHHH
Q 007078 130 HGD-FVLISGDTV-SNMLLTQALQEHKE 155 (619)
Q Consensus 130 ~~d-fLlv~gD~i-~~~~l~~~l~~H~~ 155 (619)
+++ ++++.+|.+ ..-.+..++..+..
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 677 566777774 44567777755444
No 283
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=46.75 E-value=1.4e+02 Score=29.42 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=55.7
Q ss_pred eeeeeCC-eehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcccC
Q 007078 52 VLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH 130 (619)
Q Consensus 52 ~LLPi~n-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~ 130 (619)
.++|.-| ...|..+|+.|... ..||+|+-....+...+.++. ..+.++.. ...|.|.+..... ...+
T Consensus 4 vii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~--------~~~~v~~~-~~~g~~~~~n~~~--~~a~ 71 (229)
T cd02511 4 VVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE--------YGAKVYQR-WWDGFGAQRNFAL--ELAT 71 (229)
T ss_pred EEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH--------cCCEEEEC-CCCChHHHHHHHH--HhCC
Confidence 3566655 56788888888654 368988887665555555543 12333433 5567777766433 3356
Q ss_pred CC-EEEEeCCeechhhHHHHHHHHH
Q 007078 131 GD-FVLISGDTVSNMLLTQALQEHK 154 (619)
Q Consensus 131 ~d-fLlv~gD~i~~~~l~~~l~~H~ 154 (619)
++ ++++.+|.+...++...+....
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 77 6778899877666544443333
No 284
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=46.22 E-value=1.4e+02 Score=28.94 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=56.8
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| .+.|..+|+.|.+... -+|+|+-+...+...+.++..... ...+.++... ..+.+.|+.....
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~---~~~v~~i~~~-~~~~~~a~N~g~~-- 78 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK---DPRIRLIDNP-KRIQSAGLNIGIR-- 78 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc---CCeEEEEeCC-CCCchHHHHHHHH--
Confidence 456555 5678888999987654 378777665555445544431110 1235666543 3466666554332
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..++| ++++.+|.+... -|..+++.++.
T Consensus 79 ~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 79 NSRGDIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred HhCCCEEEEECCCccCCHHHHHHHHHHHhc
Confidence 24678 666778886555 46777765443
No 285
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=45.28 E-value=1.6e+02 Score=27.19 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=56.1
Q ss_pred eeeeCC-eehHHHHHHHHHHC----CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~----Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| ...|..+|+.+.+. ...||+|+-....+...+.+...... .-.+.++..+...|.+.|+.... .
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~---~~~~~~~~~~~n~G~~~a~n~g~--~ 76 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR---VPRVRVIRLSRNFGKGAAVRAGF--K 76 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh---CCCeEEEEccCCCCccHHHHHHH--H
Confidence 355555 35677888888887 36788887665433333333221000 01345566666678777776443 3
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~ 154 (619)
..+++ ++++.+|..... -|..++....
T Consensus 77 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 105 (185)
T cd04179 77 AARGDIVVTMDADLQHPPEDIPKLLEKLL 105 (185)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34568 677888875555 4667776533
No 286
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=44.88 E-value=2.2e+02 Score=27.50 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=59.8
Q ss_pred eeeeeCC-e-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 52 VLLPLVN-V-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 52 ~LLPi~n-~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
.++|.-| . +.|..+|+.+.+..-.+|+|+.....+...+.+...... ..+.++. ....|.+.|+.... ...
T Consensus 4 VvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~----~~~~v~~-~~~~g~~~a~n~g~--~~a 76 (235)
T cd06434 4 VIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY----GGIFVIT-VPHPGKRRALAEGI--RHV 76 (235)
T ss_pred EEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC----CcEEEEe-cCCCChHHHHHHHH--HHh
Confidence 3567666 4 789999999998766788888776666555554322111 1233333 34456677765432 234
Q ss_pred CCC-EEEEeCCeechhh-HHHHHHHHH
Q 007078 130 HGD-FVLISGDTVSNML-LTQALQEHK 154 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~~-l~~~l~~H~ 154 (619)
++| ++++.+|.+...+ |..+++...
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 678 6778899966654 666666554
No 287
>PRK10018 putative glycosyl transferase; Provisional
Probab=41.64 E-value=2.7e+02 Score=28.70 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=60.2
Q ss_pred eeeeCC-eehHHHHHHHHHHCCCc--EEEEEccCC--hHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAH--SKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv~--eI~vv~~~~--~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| ...|..+|+.+...-.. ||+|+-... .+.+++++.... ...|.++..+...|.+.|+.... .
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~-----~~ri~~i~~~~n~G~~~a~N~gi--~ 82 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN-----DPRITYIHNDINSGACAVRNQAI--M 82 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC-----CCCEEEEECCCCCCHHHHHHHHH--H
Confidence 456555 56678899888776443 776665432 255666665422 12577777777788888876433 2
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..+++ ++++.+|.+... .|..+++...+
T Consensus 83 ~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 83 LAQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 35678 566777775554 46777765443
No 288
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=41.35 E-value=79 Score=29.48 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=43.7
Q ss_pred EEcCCcEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC
Q 007078 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (619)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~ 413 (619)
.+.+.+.-..++.|++..+|...+..+...|. +++..+.+..+.+.|...+.+.+-+-+....|..|+.+..
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEG 118 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEe
Confidence 44444444444666666666555444444443 2233345666777888888777777777777777777663
No 289
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.07 E-value=99 Score=33.47 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=53.5
Q ss_pred HHHHHHHCC-CcEEEEEccCCh--HHHHHHHHccCCCCCCCceEEEE--eCCCccCHHHHHHHHHhh-cccCCCEEEEeC
Q 007078 65 TLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKTI--ESHNIISAGDALRLIYEQ-NVIHGDFVLISG 138 (619)
Q Consensus 65 ~Le~L~~~G-v~eI~vv~~~~~--~~i~~~l~~~~~~~~~~~~I~~i--~~~~~~~~gdalr~~~~~-~~i~~dfLlv~g 138 (619)
++..+.+.+ ++.++++++.|. +....+++...-.. +.+..... .+.-+..+|.+|..+..- .-.+-|.+||+|
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~-pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhG 100 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRK-PDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHG 100 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCC-CCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 345666665 999999999887 77777776632111 22333333 122233466666655321 234678999999
Q ss_pred CeechhhHHHHHHHHHHh
Q 007078 139 DTVSNMLLTQALQEHKER 156 (619)
Q Consensus 139 D~i~~~~l~~~l~~H~~~ 156 (619)
|+-+ .|...+...+.+
T Consensus 101 DT~t--~lA~alaa~~~~ 116 (383)
T COG0381 101 DTNT--TLAGALAAFYLK 116 (383)
T ss_pred Ccch--HHHHHHHHHHhC
Confidence 9865 555566666654
No 290
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=40.39 E-value=2.1e+02 Score=28.21 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=55.2
Q ss_pred eeeeCC-eehHHHHHHHHHHC----CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~----Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| ...|..+++.+.+. .--||+|+-....+...+.+.+..-. .+...+.++......|.|.|+.....
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~-~~~~~v~~~~~~~n~G~~~a~n~g~~-- 90 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV-YGEDRILLRPRPGKLGLGTAYIHGLK-- 90 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCcEEEEecCCCCCHHHHHHHHHH--
Confidence 445444 34566666666542 12377777654434333333321000 01124666665666788888875432
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..+++ ++++.+|...+. .|..+++....
T Consensus 91 ~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 91 HASGDFVVIMDADLSHHPKYLPSFIKKQRE 120 (243)
T ss_pred HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34678 567889997665 56677765443
No 291
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=39.45 E-value=2.8e+02 Score=25.95 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=56.0
Q ss_pred eeeeCC-e-ehHHHHHHHHHHCCCc--EEEEEccCChH-HHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 53 LLPLVN-V-PMINYTLAWLEAAGVA--EVFVFCCAHSK-QVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 53 LLPi~n-~-PlI~y~Le~L~~~Gv~--eI~vv~~~~~~-~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
++|.-| . ..|..+|+.|.+.-.. +|+|+-....+ .++..++..... .-.+.++......|.+.++-....
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~a~n~g~~-- 80 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ---DPRIKVVFREENGGISAATNSALE-- 80 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc---CCCEEEEEcccCCCHHHHHHHHHH--
Confidence 456555 4 7788889998876433 67776543322 333333221000 123555555666788887654332
Q ss_pred ccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
..++| ++++..|.+... -|..+++.+.+
T Consensus 81 ~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 81 LATGEFVALLDHDDELAPHALYEVVKALNE 110 (202)
T ss_pred hhcCCEEEEECCCCcCChHHHHHHHHHHHh
Confidence 34678 566677876655 46777777633
No 292
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=38.69 E-value=3e+02 Score=26.65 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=54.4
Q ss_pred eeeeCCee--hHHHHHHHHHHCCC--cEEEEEccCChH-----HHHHHHHccCCCCCCCceEEEEeCCCccCH-HHHHHH
Q 007078 53 LLPLVNVP--MINYTLAWLEAAGV--AEVFVFCCAHSK-----QVIDYLENSEWFSQPNFTVKTIESHNIISA-GDALRL 122 (619)
Q Consensus 53 LLPi~n~P--lI~y~Le~L~~~Gv--~eI~vv~~~~~~-----~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~-gdalr~ 122 (619)
++|.-|.+ +|..+|+.|..... -+|+|+-....+ .++++.... +..+.++......|. +.|+..
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~------~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL------GERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh------CCcEEEEEcCCCCCCchHHHHH
Confidence 57877753 79999999998753 367766654322 233444331 124555544433453 666665
Q ss_pred HHhhcccCCC-EEEEeCCeechh-hHHHHHHHH
Q 007078 123 IYEQNVIHGD-FVLISGDTVSNM-LLTQALQEH 153 (619)
Q Consensus 123 ~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H 153 (619)
......-+.| ++++..|.+... -|..++...
T Consensus 77 g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 77 ALERTAPDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred HHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 4332112257 677888985554 456666554
No 293
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.45 E-value=2.3e+02 Score=26.75 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=55.5
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC--cEEEEEccCCh----HHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHh
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHS----KQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~----~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~ 125 (619)
++|.-| ...|..+|+.+..... -||+|+-.... +.++++..+. +..+.++......|.+.++....
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~n~g~- 75 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKD------PFIIILIRNGKNLGVARNFESLL- 75 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcC------CceEEEEeCCCCccHHHHHHHHH-
Confidence 567666 4578889999887643 36777665332 3344443321 12455666667778888876542
Q ss_pred hcccCCC-EEEEeCCeechh-hHHHHHHH
Q 007078 126 QNVIHGD-FVLISGDTVSNM-LLTQALQE 152 (619)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (619)
...+++ ++++..|.+... .|..+++.
T Consensus 76 -~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 -QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 335678 566777875544 46777765
No 294
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.75 E-value=3.1e+02 Score=25.80 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=57.7
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC--cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc-c
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN-V 128 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~-~ 128 (619)
++|.-| ...|..+|+.|.+.-. .+|+|+-....+...+.+++... ..++.++..+...|.+.++....... .
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~----~~~i~~~~~~~n~g~~~~~n~~~~~a~~ 77 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD----LDNIVYLRLPENLGGAGGFYEGVRRAYE 77 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC----CCceEEEECccccchhhHHHHHHHHHhc
Confidence 345444 5678899999987633 47877766555666666655321 12366666666667666654432222 2
Q ss_pred cCCC-EEEEeCCeechhh-HHHHHHHHH
Q 007078 129 IHGD-FVLISGDTVSNML-LTQALQEHK 154 (619)
Q Consensus 129 i~~d-fLlv~gD~i~~~~-l~~~l~~H~ 154 (619)
.+.| ++++..|.+...+ +..+++...
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 3467 5677888876654 445554443
No 295
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=36.05 E-value=3e+02 Score=25.22 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=51.7
Q ss_pred eeeeCC-eehHHHHHHHHHHC--CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCC-CccCHHHHHHHHHhhcc
Q 007078 53 LLPLVN-VPMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESH-NIISAGDALRLIYEQNV 128 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~--Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~-~~~~~gdalr~~~~~~~ 128 (619)
++|.-| ...|..+|+.+... .-.||+|+-....+..++.+++.. ...+..+..+... ...+.+.++... ...
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~n~g--~~~ 77 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK--SQFPIPIKHVWQEDEGFRKAKIRNKA--IAA 77 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH--hhcCCceEEEEcCCcchhHHHHHHHH--HHH
Confidence 355554 56788999999875 234777776655554444443310 0012233333322 233455554432 233
Q ss_pred cCCC-EEEEeCCeechhh-HHHHHHHH
Q 007078 129 IHGD-FVLISGDTVSNML-LTQALQEH 153 (619)
Q Consensus 129 i~~d-fLlv~gD~i~~~~-l~~~l~~H 153 (619)
.+++ ++++.+|.+...+ |..+++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 4677 6677888866654 45555543
No 296
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=35.80 E-value=1.8e+02 Score=27.90 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred eeeeCC-eehHHHHHHHHHHCC---CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAG---VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~G---v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~ 128 (619)
++|.-| ...|..+|+.+...- --||+|+-....+...+.+++. ... .-.+.++......|.+.|+.... ..
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~--~~~-~~~i~~~~~~~n~G~~~a~n~g~--~~ 76 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVREL--AKE-YPRVRLIVRPGKRGLGSAYIEGF--KA 76 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHH--HHh-CCceEEEecCCCCChHHHHHHHH--HH
Confidence 456655 456788888887653 3577777654433333333220 000 01355666667778888876443 23
Q ss_pred cCCC-EEEEeCCeechh-hHHHHHHHHH
Q 007078 129 IHGD-FVLISGDTVSNM-LLTQALQEHK 154 (619)
Q Consensus 129 i~~d-fLlv~gD~i~~~-~l~~~l~~H~ 154 (619)
.++| ++++.+|..... .|..+++...
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 104 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQL 104 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5578 567889986655 4566666533
No 297
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=34.89 E-value=2.9e+02 Score=29.22 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=57.6
Q ss_pred eeeeCC-eehHHHHHHHHHHC----------CCcEEEEEccCChH----HHHHHHHccCCCCCCCceEEEEeCCCccCHH
Q 007078 53 LLPLVN-VPMINYTLAWLEAA----------GVAEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIESHNIISAG 117 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~----------Gv~eI~vv~~~~~~----~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~g 117 (619)
.+|.-| .+-|..+|+.+.+. +--||+|+-....+ .++++..+.. .++..+.++..+...|.|
T Consensus 75 VIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~---~~~~~i~vi~~~~N~G~~ 151 (333)
T PTZ00260 75 VIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI---NPNIDIRLLSLLRNKGKG 151 (333)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC---CCCCcEEEEEcCCCCChH
Confidence 455545 56677777766541 23578777754333 3333333210 012347777767778999
Q ss_pred HHHHHHHhhcccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 118 DALRLIYEQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 118 dalr~~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
.|++.... .-+++ ++++-+|...+. ++..+++..+.
T Consensus 152 ~A~~~Gi~--~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 152 GAVRIGML--ASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHHHHHH--HccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99885433 23578 567889986655 66677766554
No 298
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=34.17 E-value=3.9e+02 Score=25.74 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCe-ehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc-CCC-E
Q 007078 57 VNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI-HGD-F 133 (619)
Q Consensus 57 ~n~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i-~~d-f 133 (619)
.+. ..|..+|+.+... ..+|+|+=+...+......+. . ...+.++..+...|.+.|+........- ..+ +
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~-----~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-N-----SEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-c-----CCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 345 7888899998877 667777765443333333221 0 1246666666667878776654322111 236 6
Q ss_pred EEEeCCeechh-hHHHHH
Q 007078 134 VLISGDTVSNM-LLTQAL 150 (619)
Q Consensus 134 Llv~gD~i~~~-~l~~~l 150 (619)
+++.+|.+... .|..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 77889997665 445554
No 299
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=33.92 E-value=1.7e+02 Score=27.16 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=51.8
Q ss_pred eeeeCC-eehHHHHHHHHHHC-----CCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhh
Q 007078 53 LLPLVN-VPMINYTLAWLEAA-----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~-----Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~ 126 (619)
++|.-| .-.|..+|+.|... ..-||+|+-....+...+.++.. ... .-.+.++......|.+.|++...
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~-~~~i~~i~~~~n~G~~~a~n~g~-- 76 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILREL--AAR-DPRVKVIRLSRNFGQQAALLAGL-- 76 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHH--Hhh-CCCEEEEEecCCCCcHHHHHHHH--
Confidence 355544 33455566555432 23478777664433333333221 000 11456665556678888887543
Q ss_pred cccCCC-EEEEeCCeechh-hHHHHHHH
Q 007078 127 NVIHGD-FVLISGDTVSNM-LLTQALQE 152 (619)
Q Consensus 127 ~~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (619)
...+++ ++++.+|..... .|..+++.
T Consensus 77 ~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 77 DHARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred HhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 234567 677888987655 46677665
No 300
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.70 E-value=2.7e+02 Score=26.71 Aligned_cols=100 Identities=24% Similarity=0.306 Sum_probs=56.8
Q ss_pred eeeeCC---eehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN---VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n---~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
|+|..+ .|=+.-.++.+..+|++ ++|+.+.....+..+... +.|.++... ..-.+-++|.+..+-.+
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e~RV~~~~~~--------l~v~fi~~A-~KP~~~~fr~Al~~m~l 108 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKESRVARAAEK--------LGVPFIYRA-KKPFGRAFRRALKEMNL 108 (175)
T ss_pred eecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCHHHHHhhhhh--------cCCceeecc-cCccHHHHHHHHHHcCC
Confidence 566654 56666667777777774 455555555566655543 455555421 22345566655555455
Q ss_pred CCCEEEEeCCeechhhHHHHHHHHHHhhccCCCceEEEEEecCC
Q 007078 130 HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK 173 (619)
Q Consensus 130 ~~dfLlv~gD~i~~~~l~~~l~~H~~~~~~d~~a~mT~~~~~~~ 173 (619)
..+=+++-||.+ +.+++..|+. ..-|+.+.+..
T Consensus 109 ~~~~vvmVGDqL----~TDVlggnr~-------G~~tIlV~Pl~ 141 (175)
T COG2179 109 PPEEVVMVGDQL----FTDVLGGNRA-------GMRTILVEPLV 141 (175)
T ss_pred ChhHEEEEcchh----hhhhhccccc-------CcEEEEEEEec
Confidence 555556668875 3466666665 34455555543
No 301
>PRK11204 N-glycosyltransferase; Provisional
Probab=32.08 E-value=2.4e+02 Score=30.60 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=59.5
Q ss_pred eeeeeCC-eehHHHHHHHHHHCCC--cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcc
Q 007078 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (619)
Q Consensus 52 ~LLPi~n-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~ 128 (619)
.++|.-| ...|..+++.+.+... -||+|+-....+...+.+++.. .. .-.+.++...+..|.+.|+..... .
T Consensus 58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~--~~-~~~v~~i~~~~n~Gka~aln~g~~--~ 132 (420)
T PRK11204 58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA--AQ-IPRLRVIHLAENQGKANALNTGAA--A 132 (420)
T ss_pred EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH--Hh-CCcEEEEEcCCCCCHHHHHHHHHH--H
Confidence 3555555 5678899999887643 3777776544333333332210 00 124666765566788888875433 3
Q ss_pred cCCC-EEEEeCCeechhh-HHHHHHHHHH
Q 007078 129 IHGD-FVLISGDTVSNML-LTQALQEHKE 155 (619)
Q Consensus 129 i~~d-fLlv~gD~i~~~~-l~~~l~~H~~ 155 (619)
.++| ++++.+|.+...+ |..+++...+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 5678 6778899866654 6777776654
No 302
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.04 E-value=3.5e+02 Score=25.74 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=54.0
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC----cEEEEEccCChHHHHHHHH-ccCCCCCCCceEEEEeCC--CccCHHHHHHHHH
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLE-NSEWFSQPNFTVKTIESH--NIISAGDALRLIY 124 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~-~~~~~~~~~~~I~~i~~~--~~~~~gdalr~~~ 124 (619)
++|.-| ...|..+|+.|...-. -||+|+-....+...+.+. .... .+..+.++... ...|...++....
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~v~~~~~~~~~~~g~~~a~n~g~ 78 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK---PNFQLKILNNSRVSISGKKNALTTAI 78 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC---CCcceEEeeccCcccchhHHHHHHHH
Confidence 567766 5668899999877632 4677776544333333332 1111 12345555443 2345555554332
Q ss_pred hhcccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 125 ~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
...+++ ++++-+|.+... -|..+++.+..
T Consensus 79 --~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~ 109 (229)
T cd04192 79 --KAAKGDWIVTTDADCVVPSNWLLTFVAFIQK 109 (229)
T ss_pred --HHhcCCEEEEECCCcccCHHHHHHHHHHhhc
Confidence 234577 567788886655 45666665543
No 303
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=29.60 E-value=63 Score=27.33 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=24.5
Q ss_pred eeeCCeehHHHHHHHHHH--CCCcEEEEEcc
Q 007078 54 LPLVNVPMINYTLAWLEA--AGVAEVFVFCC 82 (619)
Q Consensus 54 LPi~n~PlI~y~Le~L~~--~Gv~eI~vv~~ 82 (619)
+-++++|+..|.+..+.+ .|.++|.|=..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 457899999999999997 48999988664
No 304
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.97 E-value=6.2e+02 Score=25.52 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=63.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCceeee-eCC---eehHHHHHHHHHHCCCcEEEEEccCC---hHHHHHHHHccCCCC
Q 007078 27 QPLQAILLADSFTTKFRPITLERPKVLLP-LVN---VPMINYTLAWLEAAGVAEVFVFCCAH---SKQVIDYLENSEWFS 99 (619)
Q Consensus 27 ~~lqAVILA~g~gtRf~PlT~~~PK~LLP-i~n---~PlI~y~Le~L~~~Gv~eI~vv~~~~---~~~i~~~l~~~~~~~ 99 (619)
..+.+|+.+...|+-+.- ....-..+.. -.| ..-..=+++.|...|+++|.|++.|. .+++.+|+++.
T Consensus 70 a~~dvi~~~cTsgs~~~G-~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~---- 144 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIG-DDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR---- 144 (239)
T ss_pred CCCCEEEEccchhheecC-HHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC----
Confidence 467788888766653221 0011111111 012 34456678888899999999999986 46777888763
Q ss_pred CCCceEEEEeC-----------CCccCHHHHHHHHHhhcccCCCEEEEeCCeechhhHHHHHHH
Q 007078 100 QPNFTVKTIES-----------HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQE 152 (619)
Q Consensus 100 ~~~~~I~~i~~-----------~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~ 152 (619)
|+.|.-+.. ..+..+-++++.+ ..-.-|-|+++|=.+.-.++-+-++.
T Consensus 145 --G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~---~~~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 145 --GFEIVNFTCLGLTDDREMARISPDCIVEAALAA---FDPDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --CcEEeeeeccCCCCCceeeecCHHHHHHHHHHh---cCCCCCEEEEeCCCchhHHHHHHHHH
Confidence 444443321 1222233333322 11234688888876666666555554
No 305
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=27.68 E-value=3.2e+02 Score=28.72 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=52.8
Q ss_pred eeeeeCC-eehHHHHHHHH----HHCCC-cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHh
Q 007078 52 VLLPLVN-VPMINYTLAWL----EAAGV-AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (619)
Q Consensus 52 ~LLPi~n-~PlI~y~Le~L----~~~Gv-~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~ 125 (619)
..+|.-| ..-|..+++.+ .+... -||+|+-....+.-.+.+.+.. ...+..+..+......|.+.|++...
T Consensus 10 VVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~--~~~~~~v~~i~~~~n~G~~~A~~~G~- 86 (325)
T PRK10714 10 VVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAA--QAPDSHIVAILLNRNYGQHSAIMAGF- 86 (325)
T ss_pred EEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHH--hhcCCcEEEEEeCCCCCHHHHHHHHH-
Confidence 3455544 33344444444 33333 3777766543333333222210 00123455444455678888988543
Q ss_pred hcccCCC-EEEEeCCeechh-hHHHHHHHHH
Q 007078 126 QNVIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (619)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~ 154 (619)
...++| ++++.+|...+. .+..+++..+
T Consensus 87 -~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 87 -SHVTGDLIITLDADLQNPPEEIPRLVAKAD 116 (325)
T ss_pred -HhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 234678 677889996655 7778888764
No 306
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=27.24 E-value=2e+02 Score=26.33 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=49.8
Q ss_pred cCCCeEEEEEeCC-CCCCCCC-CCCCCCceeeeeCCe------ehHHHHHHHHHHCCCcEEEEEccCC---hHHHHHHHH
Q 007078 25 ARQPLQAILLADS-FTTKFRP-ITLERPKVLLPLVNV------PMINYTLAWLEAAGVAEVFVFCCAH---SKQVIDYLE 93 (619)
Q Consensus 25 ~~~~lqAVILA~g-~gtRf~P-lT~~~PK~LLPi~n~------PlI~y~Le~L~~~Gv~eI~vv~~~~---~~~i~~~l~ 93 (619)
++-.+.+.+.++. ..+||.| ++.-.+|+-+-+..| -=|+.+-++|..+|-+.||+..... .+++.+||.
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred hccceeeeeecccCccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 4556777777665 4478887 666677776555432 2477888999999999998877643 578888886
Q ss_pred c
Q 007078 94 N 94 (619)
Q Consensus 94 ~ 94 (619)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 5
No 307
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=26.99 E-value=4.2e+02 Score=29.17 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=58.2
Q ss_pred eeeeeCC-eehHHHHHHHHHHCCC--cEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcc
Q 007078 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (619)
Q Consensus 52 ~LLPi~n-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~ 128 (619)
.++|.-| ...|..+|+.+.+..- -||+|+.....+...+.+.+.. ...+ .+.++......|.+.|+..... .
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~-~~~~--~v~vv~~~~n~Gka~AlN~gl~--~ 153 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALL-AEDP--RLRVIHLAHNQGKAIALRMGAA--A 153 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHH-HhCC--CEEEEEeCCCCCHHHHHHHHHH--h
Confidence 6788877 4668888998877643 3777776543332222222100 0001 3455554556688888775432 3
Q ss_pred cCCC-EEEEeCCeechhh-HHHHHHHHHH
Q 007078 129 IHGD-FVLISGDTVSNML-LTQALQEHKE 155 (619)
Q Consensus 129 i~~d-fLlv~gD~i~~~~-l~~~l~~H~~ 155 (619)
.++| ++++-+|.+...+ +..+++.+.+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 4678 6778899977665 5566655543
No 308
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.76 E-value=4.6e+02 Score=24.86 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=53.1
Q ss_pred eeeeCC-eehHHHHHHHHHHCC--CcEEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhccc
Q 007078 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i 129 (619)
++|+-| .+.|..+|+.+...- --+|+|+-....+...+.+.+ ..+.++.. ..|.|.++.... ...
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~~~~~~~~--~~g~~~a~n~g~--~~a 71 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------AGVVVISS--PKGRARQMNAGA--AAA 71 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------CCeEEEeC--CcCHHHHHHHHH--Hhc
Confidence 567756 457888898888753 357777766555555555544 13444433 346677765432 334
Q ss_pred CCC-EEEEeCCeechh-hHHHHHHHH
Q 007078 130 HGD-FVLISGDTVSNM-LLTQALQEH 153 (619)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~H 153 (619)
+++ ++++..|..... -+..++..+
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~ 97 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETL 97 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHh
Confidence 577 677888885544 445554443
No 309
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=25.67 E-value=4.1e+02 Score=25.04 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=50.3
Q ss_pred eeeeeCC-eehHHHHHHHHHHCC--CcEEEEEccCChH----HHHHHHHccCCCCCCCceEEEEeCCCccCH---HHHHH
Q 007078 52 VLLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIESHNIISA---GDALR 121 (619)
Q Consensus 52 ~LLPi~n-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~----~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~---gdalr 121 (619)
.++|+-| .+.|..+|+.+...- --||+|+.....+ .++++..... .+.+.++......|. +.++.
T Consensus 5 viip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 5 ILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYP-----NVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred EEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCC-----CCcEEEEecCCcCCCCHhHHHHH
Confidence 3567765 567888999988753 2477776654333 2333433211 245555554433332 22332
Q ss_pred HHHhhcccCCC-EEEEeCCeechh-hHHHHHHH
Q 007078 122 LIYEQNVIHGD-FVLISGDTVSNM-LLTQALQE 152 (619)
Q Consensus 122 ~~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (619)
.. -...+++ ++++.+|.+... -|..+++.
T Consensus 80 ~g--~~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 80 KG--YEEARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred HH--HHhCCCCEEEEECCCceEChhHHHHHHHH
Confidence 22 2234578 566788886554 44555543
No 310
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=24.99 E-value=6.1e+02 Score=24.18 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred eeeeeCCe--ehHHHHHHHHHHCCCc----EEEEEccCChHHHHHHHHccCCCCCCCceEEEEeCC-CccCHHHHHHHHH
Q 007078 52 VLLPLVNV--PMINYTLAWLEAAGVA----EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESH-NIISAGDALRLIY 124 (619)
Q Consensus 52 ~LLPi~n~--PlI~y~Le~L~~~Gv~----eI~vv~~~~~~~i~~~l~~~~~~~~~~~~I~~i~~~-~~~~~gdalr~~~ 124 (619)
..+|.-|. .+|..+|+.|...... +|+|+-....+...+.+.+.. .. ..+.++... ...+.+.++....
T Consensus 5 viip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 5 VFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG--VE--YGYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred EEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh--cc--cCceEEEeCCCCCCcHHHHHHHH
Confidence 35677775 3788999999886543 677777665566666555421 11 123344333 3333344444332
Q ss_pred hhcccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 125 ~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
...+++ ++++..|.+... -|..+++...+
T Consensus 81 --~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 81 --AHTTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred --HhCCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 224678 567788986665 45566655543
No 311
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=21.67 E-value=7.8e+02 Score=24.21 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=55.3
Q ss_pred CeehHHHHHHHHHH-CCCc-EEEEEccCC---hHHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhcccCCC
Q 007078 58 NVPMINYTLAWLEA-AGVA-EVFVFCCAH---SKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD 132 (619)
Q Consensus 58 n~PlI~y~Le~L~~-~Gv~-eI~vv~~~~---~~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~~i~~d 132 (619)
|-|++-|.+..... .|.+ ||+|+=-.. ...+.+.+.+... .-+|...+....+|+|.|.. ......+++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg----~d~i~l~pR~~klGLgtAy~--hgl~~a~g~ 90 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG----EDNILLKPRTKKLGLGTAYI--HGLKHATGD 90 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC----CCcEEEEeccCcccchHHHH--hhhhhccCC
Confidence 56788887776555 4664 565554322 3344455544221 24677777788899999976 344566789
Q ss_pred EEE-EeCCeec-hhhHHHHHHHHHH
Q 007078 133 FVL-ISGDTVS-NMLLTQALQEHKE 155 (619)
Q Consensus 133 fLl-v~gD~i~-~~~l~~~l~~H~~ 155 (619)
|++ +-+|+=- ..-+.++++..++
T Consensus 91 fiviMDaDlsHhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 91 FIVIMDADLSHHPKFIPEFIRLQKE 115 (238)
T ss_pred eEEEEeCccCCCchhHHHHHHHhhc
Confidence 755 5678732 2345566665444
No 312
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=21.48 E-value=7.4e+02 Score=26.26 Aligned_cols=90 Identities=10% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCeehHHHHHHHHHHC--CCcEEEEEccCCh-------HHHHHHHHccCCCCCCCceEEEEeCCCccCHHHHHHHHHhhc
Q 007078 57 VNVPMINYTLAWLEAA--GVAEVFVFCCAHS-------KQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (619)
Q Consensus 57 ~n~PlI~y~Le~L~~~--Gv~eI~vv~~~~~-------~~i~~~l~~~~~~~~~~~~I~~i~~~~~~~~gdalr~~~~~~ 127 (619)
.+..-++..++.+... +++.|.++++.+. +.++.+.++ .|+++....-+...-.-.+++.+.
T Consensus 140 sD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~------~Gl~vve~~v~~~ndi~~a~~~l~--- 210 (322)
T COG2984 140 SDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARK------AGLEVVEAAVTSVNDIPRAVQALL--- 210 (322)
T ss_pred CCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHH------CCCEEEEEecCcccccHHHHHHhc---
Confidence 3466689999988875 8999988887653 333334333 367777665444444444555332
Q ss_pred ccCCCEEEEeCCeechhhHHHHHHHHHHh
Q 007078 128 VIHGDFVLISGDTVSNMLLTQALQEHKER 156 (619)
Q Consensus 128 ~i~~dfLlv~gD~i~~~~l~~~l~~H~~~ 156 (619)
=+.|.+.++.|.....-+..++..-.+.
T Consensus 211 -g~~d~i~~p~dn~i~s~~~~l~~~a~~~ 238 (322)
T COG2984 211 -GKVDVIYIPTDNLIVSAIESLLQVANKA 238 (322)
T ss_pred -CCCcEEEEecchHHHHHHHHHHHHHHHh
Confidence 2467999999998777888888776665
No 313
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=21.29 E-value=6.4e+02 Score=24.07 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred eeeeCC-eehHHHHHHHHHHCCC---cEEEEEccCChH----HHHHHHHccCCCCCCCceEEEEe--CCCccCHHHHHHH
Q 007078 53 LLPLVN-VPMINYTLAWLEAAGV---AEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIE--SHNIISAGDALRL 122 (619)
Q Consensus 53 LLPi~n-~PlI~y~Le~L~~~Gv---~eI~vv~~~~~~----~i~~~l~~~~~~~~~~~~I~~i~--~~~~~~~gdalr~ 122 (619)
++|.-| ...|..+|+.|..... -||+|+-....+ .++++..+... .++.+.... .....|.+.|...
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~a~N~ 78 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLED---SGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcc---cCeEEEEecccCCCCccHHHHHHH
Confidence 456554 6788999999987633 377777654433 34444332111 122332222 2234577777553
Q ss_pred HHhhcccCCC-EEEEeCCeechh-hHHHHHHHHHH
Q 007078 123 IYEQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (619)
Q Consensus 123 ~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~H~~ 155 (619)
.. ...+++ ++++.+|.+... .+..++....+
T Consensus 79 g~--~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 111 (219)
T cd06913 79 AI--AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQ 111 (219)
T ss_pred HH--HhcCCCEEEEECCCccCChhHHHHHHHHHHh
Confidence 32 334678 677888875544 56666666554
No 314
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=20.99 E-value=1.4e+02 Score=25.20 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.1
Q ss_pred ceeeeeCCeehHHHHHHHHHHC--CCcEEEEEccC
Q 007078 51 KVLLPLVNVPMINYTLAWLEAA--GVAEVFVFCCA 83 (619)
Q Consensus 51 K~LLPi~n~PlI~y~Le~L~~~--Gv~eI~vv~~~ 83 (619)
..-+-++++|...|+|.-|.+. |..||+|-...
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARG 38 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARG 38 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3556788999999999998874 89999887653
No 315
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=20.32 E-value=1.1e+02 Score=30.47 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=50.7
Q ss_pred eEEEEEeCCCC---CCCCCC-CCCCCceeeeeCCeehHHHHHHHHHHCCCcEEEEEccCChHHHHHHHHccCCCCCCCce
Q 007078 29 LQAILLADSFT---TKFRPI-TLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (619)
Q Consensus 29 lqAVILA~g~g---tRf~Pl-T~~~PK~LLPi~n~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~ 104 (619)
|++||.--.++ +|+.|. +.+.=..| -.-|+..++..+.. +. |+|++.. +.+..+-.. ...
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L----a~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~-------~~g 64 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL----ALAMLRDVLAALRA--VD-VVVVSRD--PEVAALARA-------RLG 64 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH----HHHHHHHHHHHHHH---S-EEEEES----S-TTTTT----------S
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH----HHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh-------ccC
Confidence 67777765544 777762 21100111 15688999999988 66 7666653 222221110 123
Q ss_pred EEEEeCCCccCHHHHHHHHHhhcccCCCEEEEeCCe--echhhHHHHHHHH
Q 007078 105 VKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (619)
Q Consensus 105 I~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~H 153 (619)
+.++..+ ..|+..|+..... ..-...++++++|+ +...++..++...
T Consensus 65 ~~vl~d~-~~gLN~Al~~a~~-~~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 65 AEVLPDP-GRGLNAALNAALA-AAGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp SEEEE----S-HHHHHHHHHH--H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred CeEecCC-CCCHHHHHHHHHh-ccCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 4555544 5688899887621 11124599999999 7788999988764
Done!