BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007079
         (619 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0CXI3|PGXC_ASPTN Probable exopolygalacturonase C OS=Aspergillus terreus (strain NIH
           2624 / FGSC A1156) GN=pgxC PE=3 SV=1
          Length = 432

 Score = 35.0 bits (79), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 524 VKQGETWWAGKYGERWNRTWGERHNGSGWVHKYGKSSSGELWDTHEQQETWYERFPHFGF 583
           VK G ++W    G R + T  E  N  GW++ YG++     WD +    T  E  PH   
Sbjct: 98  VKAGNSYWFTLEGPRVDWTGSEDIN-HGWINSYGQA----WWDANPPNGTGIENRPHLLS 152

Query: 584 YHCFDNSVQLREVRKP 599
           Y   D +++    RKP
Sbjct: 153 YTTSDATIKYMRSRKP 168


>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus
            GN=Phrf1 PE=1 SV=2
          Length = 1685

 Score = 33.9 bits (76), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 223  SPPEDDDRDMRDVRDL---QMAEKSSVYPTPVNPVVEKARSVDILPIPFESKLSEPKPDP 279
            SPP  +  D    RD     +   +S+      PV ++    ++LPI  E  +S+P P P
Sbjct: 1296 SPPSPESTDSSPERDFLPNPILPPASLPQNSTLPVTQR----EVLPIHSED-ISKPAPQP 1350

Query: 280  LLPPFQSLLGVEKEEVSETNLETPSLEEERDLGALFSAHAAEAAHALDKV 329
            L P  Q LL  +  E + T L TP +        L S    E     D V
Sbjct: 1351 LAPSDQCLLRQDTVETTATTLSTPGVLPMGKDSPLLSGRGCEVVRPKDAV 1400


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,916,828
Number of Sequences: 539616
Number of extensions: 13567585
Number of successful extensions: 27774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 27670
Number of HSP's gapped (non-prelim): 181
length of query: 619
length of database: 191,569,459
effective HSP length: 124
effective length of query: 495
effective length of database: 124,657,075
effective search space: 61705252125
effective search space used: 61705252125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)