BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007080
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATXXXXXXXXVDISDIPGGPSA 80
R + ++ TDV++VV +F HK L++ S + +++ D P
Sbjct: 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEINPEG 80
Query: 81 FETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVE 117
F F Y + L N++A A YL M V+
Sbjct: 81 FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATXXXXXXXXVDISDIPGGPSA 80
R + ++ TDV++VV +F HK L++ S + +++ D P
Sbjct: 25 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL-DPEINPEG 83
Query: 81 FETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVE 117
F F Y + L N++A A YL M V+
Sbjct: 84 FCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 27 LATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATXXXXXXXXVDISDIPGG--PSAFETC 84
L DV VVV F H+ L + S+ + L + ++P P +F+
Sbjct: 32 LYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSA------VVELPAAVQPQSFQQI 85
Query: 85 AKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGN-FVYKI 125
FCY +++N + A +L + E +EKG F K+
Sbjct: 86 LSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 30 DVIVVVDDIKFHLHKFPLLSKSACLQKLVATXXXXXXXXVDISDIPGGPSAFETCAKFCY 89
D +V+ + +F H+ L S S + + +D S + F+ +F Y
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF-LDQSQVKA--DGFQKLLEFIY 80
Query: 90 GMTVTLNAYNVVAARCAAEYLGMHESVEK 118
T+ L+++NV AA+YL + E V K
Sbjct: 81 TGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>pdb|2E2A|A Chain A, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
pdb|2E2A|B Chain B, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
pdb|2E2A|C Chain C, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
Length = 105
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 295 KLLKAAIIVDSGDMVKA-QLVRRIGQQLEEA--SVNDILIRAPEGESTMYDVDMVH 347
KLL+A ++GD KA LV G + EA S +L R GE Y V M+H
Sbjct: 23 KLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMH 78
>pdb|1E2A|A Chain A, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
pdb|1E2A|B Chain B, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
pdb|1E2A|C Chain C, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
Length = 105
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 295 KLLKAAIIVDSGDMVKA-QLVRRIGQQLEEA--SVNDILIRAPEGESTMYDVDMVH 347
KLL+A ++GD KA LV G + EA S +L R GE Y V M+H
Sbjct: 23 KLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMH 78
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 115 SVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEA 166
S E N+V + V SS I+ ++D+II ++LL MS++ K ASH IE
Sbjct: 226 SNEFANYVIQY-VIKSSGIMEMYRDTIIDKCLLRNLLSMSQD-KYASHVIEG 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,853,410
Number of Sequences: 62578
Number of extensions: 589878
Number of successful extensions: 1241
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 9
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)