Query 007080
Match_columns 619
No_of_seqs 300 out of 976
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 18:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 7.8E-87 1.7E-91 678.5 21.9 249 209-463 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 1.6E-28 3.4E-33 276.4 13.9 228 22-317 30-260 (571)
3 PHA02713 hypothetical protein; 99.9 7.7E-27 1.7E-31 262.2 11.3 222 22-315 19-246 (557)
4 PHA02790 Kelch-like protein; P 99.9 3.1E-25 6.6E-30 245.0 10.5 174 22-253 16-196 (480)
5 PHA03098 kelch-like protein; P 99.9 9.2E-24 2E-28 234.4 14.3 221 25-317 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-16 2.8E-21 140.2 7.4 103 22-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 6.3E-15 1.4E-19 122.0 7.1 83 30-114 1-84 (90)
8 KOG4350 Uncharacterized conser 99.2 7.4E-11 1.6E-15 125.6 10.5 195 21-282 37-236 (620)
9 KOG2075 Topoisomerase TOP1-int 99.1 2.4E-10 5.2E-15 124.1 10.4 184 22-255 108-298 (521)
10 KOG4591 Uncharacterized conser 98.9 1.1E-09 2.4E-14 108.0 4.4 134 7-159 43-183 (280)
11 KOG4682 Uncharacterized conser 98.4 8E-07 1.7E-11 95.5 8.6 128 23-171 64-194 (488)
12 KOG0783 Uncharacterized conser 98.1 3.8E-06 8.2E-11 96.5 5.9 124 30-170 712-846 (1267)
13 KOG0783 Uncharacterized conser 98.0 5.7E-06 1.2E-10 95.0 5.7 64 27-92 557-633 (1267)
14 PF11822 DUF3342: Domain of un 97.6 4.8E-05 1E-09 80.6 3.5 93 31-133 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.8 0.0016 3.5E-08 58.1 4.6 79 31-112 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.1 0.0033 7.2E-08 54.7 2.3 82 31-115 1-89 (94)
17 KOG2716 Polymerase delta-inter 95.7 0.038 8.2E-07 56.7 8.2 94 31-133 7-105 (230)
18 KOG3473 RNA polymerase II tran 95.3 0.046 1E-06 49.1 6.2 74 36-112 25-112 (112)
19 KOG2838 Uncharacterized conser 94.7 0.014 3E-07 60.9 1.4 99 11-113 115-219 (401)
20 PF03931 Skp1_POZ: Skp1 family 94.1 0.095 2.1E-06 42.8 4.9 56 31-90 3-59 (62)
21 PF07707 BACK: BTB And C-termi 92.5 0.023 5E-07 49.3 -1.2 99 147-296 1-101 (103)
22 KOG1724 SCF ubiquitin ligase, 92.4 0.2 4.3E-06 49.0 5.0 89 36-133 13-127 (162)
23 KOG2838 Uncharacterized conser 87.9 0.42 9.2E-06 50.2 3.1 56 39-97 262-330 (401)
24 KOG3840 Uncharaterized conserv 80.3 6.9 0.00015 42.1 8.1 89 23-113 90-185 (438)
25 smart00875 BACK BTB And C-term 74.0 3.4 7.3E-05 35.1 3.2 38 214-254 35-74 (101)
26 KOG2714 SETA binding protein S 73.4 5.4 0.00012 44.5 5.2 81 31-114 13-99 (465)
27 KOG3713 Voltage-gated K+ chann 69.7 18 0.00039 41.1 8.3 101 2-114 12-126 (477)
28 KOG1665 AFH1-interacting prote 65.3 22 0.00047 37.0 7.2 81 31-114 11-98 (302)
29 KOG0511 Ankyrin repeat protein 65.1 6.2 0.00014 43.5 3.5 75 38-115 301-380 (516)
30 PF01466 Skp1: Skp1 family, di 64.4 5.6 0.00012 33.9 2.5 33 95-133 11-43 (78)
31 KOG0511 Ankyrin repeat protein 59.2 2.9 6.2E-05 46.1 -0.3 87 22-113 141-232 (516)
32 PF14363 AAA_assoc: Domain ass 58.6 6.6 0.00014 35.0 2.0 43 416-459 30-72 (98)
33 KOG2715 Uncharacterized conser 57.2 64 0.0014 32.2 8.6 82 31-114 23-109 (210)
34 KOG1987 Speckle-type POZ prote 44.4 24 0.00052 36.7 3.8 89 37-133 109-201 (297)
35 COG5201 SKP1 SCF ubiquitin lig 44.2 54 0.0012 31.4 5.6 93 31-133 4-122 (158)
36 PF07707 BACK: BTB And C-termi 33.7 49 0.0011 28.3 3.5 76 386-462 19-97 (103)
37 PHA00617 ribbon-helix-helix do 33.5 68 0.0015 28.1 4.2 37 217-253 44-80 (80)
38 PF10929 DUF2811: Protein of u 32.8 31 0.00067 28.4 1.9 18 426-443 9-26 (57)
39 COG3919 Predicted ATP-grasp en 29.4 46 0.001 36.1 3.0 43 38-80 160-205 (415)
40 COG3510 CmcI Cephalosporin hyd 29.0 40 0.00087 34.5 2.4 34 413-446 183-218 (237)
41 PF01402 RHH_1: Ribbon-helix-h 27.5 94 0.002 22.4 3.6 35 218-252 5-39 (39)
42 PF11123 DNA_Packaging_2: DNA 27.3 41 0.0009 29.2 1.8 16 425-440 31-46 (82)
43 PF10932 DUF2783: Protein of u 25.8 64 0.0014 26.8 2.6 28 417-449 5-32 (60)
44 KOG2016 NEDD8-activating compl 22.2 1.1E+02 0.0025 34.8 4.4 62 382-443 343-434 (523)
45 smart00875 BACK BTB And C-term 21.4 1.8E+02 0.0039 24.3 4.7 65 386-457 19-88 (101)
46 PF10264 Stork_head: Winged he 21.3 89 0.0019 27.4 2.8 28 411-438 38-65 (80)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=7.8e-87 Score=678.49 Aligned_cols=249 Identities=50% Similarity=0.869 Sum_probs=224.2
Q ss_pred CCchhhhccccChhHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCCcccc--------ccCCchhhhhhHHHHHHHh
Q 007080 209 KDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGM--------IQSGNVGKYRSIVDAVVWL 280 (619)
Q Consensus 209 ~dWW~EDL~~L~idl~~rVI~am~s~g~~~~e~I~~aL~~Ya~~~L~~~~~~~--------~~~~~~~~~r~LLEtIV~L 280 (619)
+|||||||+.|++++|+|||.+|+++|+ ++++|+++|++||++|+|+..+.. .......++|.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~-~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGM-KPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence 4899999999999999999999999987 899999999999999999994321 1112357899999999999
Q ss_pred cCCCCCCcchHHHHHHHHHhhhhcCCHHHHHHHHHHHHhccccccccceeccC-CCCCCccccHHHHHHHHHHHHhccCC
Q 007080 281 LPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRA-PEGESTMYDVDMVHKIIEEFLMQDKN 359 (619)
Q Consensus 281 LP~ek~svsc~FLf~LLR~A~~L~as~~Cr~~LEkrIg~qLd~AtldDLLIPs-~~~~~t~YDVd~V~riv~~Fl~~~~~ 359 (619)
||.+|+++||+|||+|||+|++++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+.+.
T Consensus 80 LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~ 159 (258)
T PF03000_consen 80 LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE 159 (258)
T ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999 44447999999999999999998654
Q ss_pred CCCCCCcchhhHhhcCCCCCCchHHHHHHHHHHhhhhhhcCCCCCChhhHHHHHHhhcCCCCCCcchHHHHHHHHHHhcc
Q 007080 360 AETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQ 439 (619)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~skF~~Lae~lP~~aR~~hDgLYRAIDiYLK~Hp 439 (619)
.. ..+..+.......+..++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus 160 ~~-----~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 160 AG-----EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred cc-----cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 32 1111122233456789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhhhccccccCCCCHHHh
Q 007080 440 AISKSERKKICKLMDCRKLSVDAC 463 (619)
Q Consensus 440 ~ls~~Er~~lCr~mdc~KLS~EAc 463 (619)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.6e-28 Score=276.39 Aligned_cols=228 Identities=17% Similarity=0.218 Sum_probs=196.4
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
+|.++.+|||+|.|++++|++||.|||++|+|||+||++. +|..+.+|+|++++ +++++++++|+||+++.|+.+||
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHhH
Confidence 8999999999999999999999999999999999999985 88899999999987 69999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCCccc
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDW 180 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~~~ 180 (619)
+.|+.||.+|||++ |++.|+.||.+++ .+.||.++..+|+.+++ ..|..+|.
T Consensus 108 q~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~~-----~~L~~~a~-------- 159 (571)
T KOG4441|consen 108 QELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHSC-----TELLEVAD-------- 159 (571)
T ss_pred HHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCc-----HHHHHHHH--------
Confidence 99999999999996 6789999999999 57799999999999998 46666654
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhcCCCc
Q 007080 181 SYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRRLSGFS 258 (619)
Q Consensus 181 s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~L~~~~ 258 (619)
.|+ ..+| ...+-.||+..|+.+. ++..|.+.++ .+|+.|+++++.|+++....+.
T Consensus 160 ~~i-------------------~~~F-~~v~~~eefl~L~~~~---l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~ 216 (571)
T KOG4441|consen 160 EYI-------------------LQHF-AEVSKTEEFLLLSLEE---LIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEERE 216 (571)
T ss_pred HHH-------------------HHHH-HHHhccHHhhCCCHHH---HHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHH
Confidence 232 2334 4577889999999998 5555555544 6778899999999999877643
Q ss_pred cccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 007080 259 KGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRI 317 (619)
Q Consensus 259 ~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR~A~~L~as~~Cr~~LEkrI 317 (619)
.+...+++.| + + +.++..||.+.+.....+..+..|+..|..=.
T Consensus 217 ---------~~~~~ll~~v-r-~----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 217 ---------EHLPALLEAV-R-L----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ---------HHHHHHHHhc-C-c----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 4566788877 6 4 46899999999999999999999999876644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=7.7e-27 Score=262.15 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=174.8
Q ss_pred eeccCcceeEEEEEC-CEEEeecCcccccCCHHHHHHhccc-ccc-CCCeEecCCCCCCHHHHHHHHHhhcCceEeeccc
Q 007080 22 YVASELATDVIVVVD-DIKFHLHKFPLLSKSACLQKLVATA-NEA-NNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAY 98 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vg-g~~F~lHK~vLas~S~yFr~Lf~~~-~e~-~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~ 98 (619)
+|.++.+|||+|.|+ |++|++||.+||++|+|||+||++. +|+ .+.+|+|++++ +++|+.+++|+||++ |+.+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCHH
Confidence 788999999999997 8999999999999999999999975 654 36789999997 699999999999997 7899
Q ss_pred cHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCCc
Q 007080 99 NVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKV 178 (619)
Q Consensus 99 NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~ 178 (619)
||+.|+.||++|||++ |+..|++||.+++ ...||.+++.+++.+.+. .|..+|.
T Consensus 95 nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~~~-----~L~~~a~------ 148 (557)
T PHA02713 95 NVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMSHI-----PIVKYIK------ 148 (557)
T ss_pred HHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhccch-----HHHHHHH------
Confidence 9999999999999996 7889999999999 577999999888887752 3554443
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhc---cCCChhHHHHHHHHHHHhhcC
Q 007080 179 DWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTK---AILSNEVIGEALKAYAYRRLS 255 (619)
Q Consensus 179 ~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~---g~~~~e~I~~aL~~Ya~~~L~ 255 (619)
.|. .++| .+..-.|||..|+.+. ++..|.++ .+.+++.|++++++|+++...
T Consensus 149 --~~i-------------------~~~f-~~v~~~~ef~~L~~~~---l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~ 203 (557)
T PHA02713 149 --RML-------------------MSNI-PTLITTDAFKKTVFEI---LFDIISTNDNVYLYREGYKVTILLKWLEYNYI 203 (557)
T ss_pred --HHH-------------------HHHH-HHHhCChhhhhCCHHH---HHHHhccccccCCCcHHHHHHHHHHHHhcCHH
Confidence 121 1122 1222358999999988 55555543 235788999999999999865
Q ss_pred CCccccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHHHhhhhcCCHHHHHHHHH
Q 007080 256 GFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVR 315 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR~A~~L~as~~Cr~~LEk 315 (619)
.+ .+...||+.| + +| .++.++++ .+.....+..++.|+..|+.
T Consensus 204 ~r----------~~~~~ll~~V-R-~~----~l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 204 TE----------EQLLCILSCI-D-IQ----NLDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred HH----------HHHhhhHhhh-h-Hh----hcchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 43 2344788887 7 43 35566776 55566778889999988766
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=244.98 Aligned_cols=174 Identities=10% Similarity=0.096 Sum_probs=141.2
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEec--CCCCCCHHHHHHHHHhhcCceEeeccc
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDI--SDIPGGPSAFETCAKFCYGMTVTLNAY 98 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L--~d~pgGaeaFelv~~FcYg~~i~It~~ 98 (619)
++.+|.+|||++ |.|.+|+|||.|||++|+|||+||++. +|+. .+|.+ .+++ +++|+.+++|+|||+|.||.+
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEecc
Confidence 678899999877 556699999999999999999999974 6664 35665 3776 699999999999999999999
Q ss_pred cHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCCc
Q 007080 99 NVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKV 178 (619)
Q Consensus 99 NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~ 178 (619)
||+.|+.||.+|||++ |++.|++||.+++ .+.||.+++.+|+.|+| +.|..+|.
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~~-----~~L~~~a~------ 145 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYGL-----SNLLCHTK------ 145 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhCH-----HHHHHHHH------
Confidence 9999999999999996 7789999999999 57799999999999998 78887775
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCch--hhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhh
Q 007080 179 DWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWW--VEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRR 253 (619)
Q Consensus 179 ~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW--~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~ 253 (619)
.|. .++| .+... +|||..|++ +..|.++.+ .+|+.|++++++|+++.
T Consensus 146 --~fi-------------------~~nF-~~v~~~~~~ef~~L~~------~~lLssd~L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 146 --DFI-------------------AKHF-LELEDDIIDNFDYLSM------KLILESDELNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred --HHH-------------------HHhH-HHHhcccchhhhhCCH------HHhcccccCCCccHHHHHHHHHHHHHhh
Confidence 222 1222 11222 378988886 234555544 46789999999999863
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=9.2e-24 Score=234.44 Aligned_cols=221 Identities=15% Similarity=0.136 Sum_probs=171.6
Q ss_pred cCcceeEEEEE--CCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHhH
Q 007080 25 SELATDVIVVV--DDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVA 102 (619)
Q Consensus 25 ~g~~cDV~I~V--gg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~ 102 (619)
+|.+|||+|.| +|++|++||.+|+++|+|||+||++... +.+|+|++ + +++|+.+++|+|||+++|+.+||+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 67899999998 9999999999999999999999997532 56899988 5 6999999999999999999999999
Q ss_pred HHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCCccccc
Q 007080 103 ARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSY 182 (619)
Q Consensus 103 L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~~~s~ 182 (619)
|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.+++ +.|...|- .|
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~--------~~ 132 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAY--------NY 132 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHH--------HH
Confidence 999999999995 8899999999988 57899999999999987 44544432 11
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhcCCCccc
Q 007080 183 TYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRRLSGFSKG 260 (619)
Q Consensus 183 t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~L~~~~~~ 260 (619)
. ..++ ...--.+||..|+.+..+.+ |+++.+ .+|+.|.++++.|+++....+.
T Consensus 133 i-------------------~~nf-~~v~~~~~f~~l~~~~l~~l---l~~~~L~v~~E~~v~~av~~W~~~~~~~r~-- 187 (534)
T PHA03098 133 I-------------------RNNI-ELIYNDPDFIYLSKNELIKI---LSDDKLNVSSEDVVLEIIIKWLTSKKNNKY-- 187 (534)
T ss_pred H-------------------HHHH-HHHhcCchhhcCCHHHHHHH---hcCCCcCcCCHHHHHHHHHHHHhcChhhhH--
Confidence 1 0001 00112468899998884444 555544 4688999999999998765443
Q ss_pred cccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHH------HhhhhcCCHHHHHHHHHHH
Q 007080 261 MIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLK------AAIIVDSGDMVKAQLVRRI 317 (619)
Q Consensus 261 ~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR------~A~~L~as~~Cr~~LEkrI 317 (619)
.....|++.| + + +.++..+|..+.+ ...++ .+..|+..|+...
T Consensus 188 -------~~~~~ll~~v-R-~----~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 188 -------KDICLILKVL-R-I----TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred -------hHHHHHHhhc-c-c----cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 3456788877 6 4 4578888988876 33444 6778887776544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.3e-16 Score=140.22 Aligned_cols=103 Identities=25% Similarity=0.362 Sum_probs=89.6
Q ss_pred eeccCcceeEEEEEC-CEEEeecCcccccCCHHHHHHhccc--cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeec-c
Q 007080 22 YVASELATDVIVVVD-DIKFHLHKFPLLSKSACLQKLVATA--NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLN-A 97 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vg-g~~F~lHK~vLas~S~yFr~Lf~~~--~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It-~ 97 (619)
+..++.+||++|.|+ +..|++||.+|+++|+||++||... .+....+|.+++++ +++|+.+++|+|++++.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 456788999999999 8999999999999999999999986 33333478889997 6999999999999999998 9
Q ss_pred ccHhHHHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 98 YNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 98 ~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
+|+..++..|++|+|++ |...|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999994 889999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=6.3e-15 Score=122.01 Aligned_cols=83 Identities=29% Similarity=0.409 Sum_probs=76.2
Q ss_pred eEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHhHHHHhHh
Q 007080 30 DVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAE 108 (619)
Q Consensus 30 DV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~L~cAAe 108 (619)
||+|.|||..|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999975 34456788998876 6999999999999999999999999999999
Q ss_pred hhCccc
Q 007080 109 YLGMHE 114 (619)
Q Consensus 109 ~LqM~e 114 (619)
+++|++
T Consensus 79 ~~~~~~ 84 (90)
T smart00225 79 YLQIPG 84 (90)
T ss_pred HHCcHH
Confidence 999986
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.19 E-value=7.4e-11 Score=125.63 Aligned_cols=195 Identities=15% Similarity=0.228 Sum_probs=132.7
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhcc-ccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVAT-ANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~-~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++......||++.|+++.|++||.+||++|.|||+|+-+ +.|+.+..|.|++- .+++|..+++|+|+|++.++...
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecccch
Confidence 3667778899999999999999999999999999999876 58888888988874 37999999999999999987643
Q ss_pred ---HhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccC
Q 007080 100 ---VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVS 176 (619)
Q Consensus 100 ---V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~ 176 (619)
....+.-|...++.+ |-..+.+||.+.+ .++|--.++..|.-|++ ..|...+++
T Consensus 115 ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~m--- 171 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMM--- 171 (620)
T ss_pred HHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHH---
Confidence 344555566666654 7778999999877 46665556666666665 344444331
Q ss_pred CccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcC
Q 007080 177 KVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI-LSNEVIGEALKAYAYRRLS 255 (619)
Q Consensus 177 ~~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~-~~~e~I~~aL~~Ya~~~L~ 255 (619)
|.. + +. .+.---+-|..|+-+..+.++. .+.. .++..|+-|+..|.+..-.
T Consensus 172 -----fmD-r------nA-------------~~lL~~~sFn~LSk~sL~e~l~---RDsFfApE~~IFlAv~~W~~~Nsk 223 (620)
T KOG4350|consen 172 -----FMD-R------NA-------------DQLLEDPSFNRLSKDSLKELLA---RDSFFAPELKIFLAVRSWHQNNSK 223 (620)
T ss_pred -----HHh-c------CH-------------HhhhcCcchhhhhHHHHHHHHh---hhcccchHHHHHHHHHHHHhcCch
Confidence 110 0 00 0001112344566666444443 3333 4566899999999764421
Q ss_pred CCccccccCCchhhhhhHHHHHHHhcC
Q 007080 256 GFSKGMIQSGNVGKYRSIVDAVVWLLP 282 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~r~LLEtIV~LLP 282 (619)
...+.++|.| + ||
T Consensus 224 ------------e~~k~~~~~V-R-LP 236 (620)
T KOG4350|consen 224 ------------EASKVLLELV-R-LP 236 (620)
T ss_pred ------------hhHHHHHHHH-h-hh
Confidence 3456777766 6 54
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.11 E-value=2.4e-10 Score=124.13 Aligned_cols=184 Identities=21% Similarity=0.278 Sum_probs=137.8
Q ss_pred eeccCcceeEEEEECC-----EEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEee
Q 007080 22 YVASELATDVIVVVDD-----IKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTL 95 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg-----~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~I 95 (619)
+..+...+||.+.||+ +.||+||++|+..|.-|.+||.+. .+....+|+++|+. |.+|...++|+|+-.+.+
T Consensus 108 l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 108 LFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred hccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcchhhh
Confidence 5667889999999974 699999999999999999999985 45446799999997 699999999999999999
Q ss_pred ccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhcccc
Q 007080 96 NAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDV 175 (619)
Q Consensus 96 t~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~ 175 (619)
.++||..++.||.-.-.+ .|...|.+||+..+..- +.+.-|.+|. .+.++-.++++|++.|...+- +.
T Consensus 186 ~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~~--naf~~L~q~A---~lf~ep~Li~~c~e~id~~~~-~a 253 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMAD--NAFLELFQRA---KLFDEPSLISICLEVIDKSFE-DA 253 (521)
T ss_pred hHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCCh--HHHHHHHHHH---HhhcCHHHHHHHHHHhhhHHH-hh
Confidence 999999999999777666 48899999999988632 3333444442 245666789999998855432 10
Q ss_pred CCccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhc
Q 007080 176 SKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI-LSNEVIGEALKAYAYRRL 254 (619)
Q Consensus 176 ~~~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~-~~~e~I~~aL~~Ya~~~L 254 (619)
. . + . ||-|+-.+ .|.|..|++ .+.+ .++-.+++++.+|+.---
T Consensus 254 l-----------------------------~-~-E-Gf~did~~-~dt~~evl~---r~~l~~~e~~lfeA~lkw~~~e~ 297 (521)
T KOG2075|consen 254 L-----------------------------T-P-E-GFCDIDST-RDTYEEVLR---RDTLEAREFRLFEAALKWAEAEC 297 (521)
T ss_pred h-----------------------------C-c-c-ceeehhhH-HHHHHHHHh---hcccchhHHHHHHHHHhhccCcc
Confidence 0 0 0 1 34444333 777665554 4433 456788999999987443
Q ss_pred C
Q 007080 255 S 255 (619)
Q Consensus 255 ~ 255 (619)
+
T Consensus 298 ~ 298 (521)
T KOG2075|consen 298 Q 298 (521)
T ss_pred h
Confidence 3
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.89 E-value=1.1e-09 Score=107.97 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=106.8
Q ss_pred cCCCCcccccCC--ceeeeccCcceeEEEEEC---CEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHH
Q 007080 7 GSKPDSFQADGN--NVRYVASELATDVIVVVD---DIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAF 81 (619)
Q Consensus 7 gsk~d~f~~~~~--~~~~~~~g~~cDV~I~Vg---g~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaF 81 (619)
.|-||+|..+=- ..-+.....++||++.++ +..+++||+|||++|++.+ |.+..+.+..+..+.|.. +++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHH
Confidence 467899977620 112677788999999998 6789999999999999864 444333334456677765 7999
Q ss_pred HHHHHhhcCceEeeccccHh--HHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCc
Q 007080 82 ETCAKFCYGMTVTLNAYNVV--AARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKV 159 (619)
Q Consensus 82 elv~~FcYg~~i~It~~NV~--~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~i 159 (619)
..+++++||-.|++..+.+. .++..|..+|..- |.++|+.=|...+ ...||..++.+||+++.
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 99999999999998887764 5788899999874 7889999988877 58899999999999875
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.39 E-value=8e-07 Score=95.49 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=107.0
Q ss_pred eccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEe--cCCCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 23 VASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVD--ISDIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 23 ~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~--L~d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
-.+|.-+||+|.+-|.+.++||.-| ..|+||..||.+. +|++...|+ |+|=--...+|..++.=.|..+|+|..+.
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHH
Confidence 3467789999999999999999866 4589999999986 676666554 44422347999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHh
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKA 171 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA 171 (619)
|..++.||.+||+. .|+++|.+-+.+.+. .++-.+.+..+..||+ +++-.+.
T Consensus 143 v~gvlAaA~~lqld------gl~qrC~evMie~ls---------pkta~~yYea~ckYgl-----e~vk~kc 194 (488)
T KOG4682|consen 143 VVGVLAAACLLQLD------GLIQRCGEVMIETLS---------PKTACGYYEAACKYGL-----ESVKKKC 194 (488)
T ss_pred HHHHHHHHHHHHHh------hHHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhh-----HHHHHHH
Confidence 99999999999999 489999999999994 6688888999999997 5554443
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.09 E-value=3.8e-06 Score=96.45 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=94.9
Q ss_pred eEEEEE-CCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhc-CceEee-----ccccHh
Q 007080 30 DVIVVV-DDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCY-GMTVTL-----NAYNVV 101 (619)
Q Consensus 30 DV~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcY-g~~i~I-----t~~NV~ 101 (619)
|+.|.. +|+.|+|||.+|++++.||..||... .|... |....+|-.+|.|+.|++|.| +-++.+ ..+=+.
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 444444 88899999999999999999999864 45444 555556656899999999999 444432 122256
Q ss_pred HHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhC---chhHHHHHHHHH
Q 007080 102 AARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELK---VASHCIEAIATK 170 (619)
Q Consensus 102 ~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~---iv~rcidsLA~k 170 (619)
.++..|+.|=+++ |...||.-|.+.+ .|++|..|+.+|..|+ +-.+|+|-|.-.
T Consensus 790 ~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 790 EILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHN 846 (1267)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 6778888888885 7788999988888 6999999999998876 457898877554
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.02 E-value=5.7e-06 Score=95.02 Aligned_cols=64 Identities=31% Similarity=0.476 Sum_probs=53.3
Q ss_pred cceeEEEEECCEEEeecCcccccCCHHHHHHhccccc---c----------CCCeEecCCCCCCHHHHHHHHHhhcCce
Q 007080 27 LATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANE---A----------NNNEVDISDIPGGPSAFETCAKFCYGMT 92 (619)
Q Consensus 27 ~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e---~----------~~~~V~L~d~pgGaeaFelv~~FcYg~~ 92 (619)
-+.|||++||+..|++||++|+++|++||+||..... . ....|.+.++|| .+||+++.|+||.+
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 3679999999999999999999999999999975321 1 124566789984 99999999999975
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.57 E-value=4.8e-05 Score=80.59 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=75.6
Q ss_pred EEEEECC------EEEeecCcccccCCHHHHHHhcc----ccccCCCeEecC-CCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 31 VIVVVDD------IKFHLHKFPLLSKSACLQKLVAT----ANEANNNEVDIS-DIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 31 V~I~Vgg------~~F~lHK~vLas~S~yFr~Lf~~----~~e~~~~~V~L~-d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. ..+...-.|-++ |+ .+|+-+++|+++-...||+.|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666632 58999999999999999999954 222222334444 66 699999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
|+.++-.++||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999995 8889999987766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.80 E-value=0.0016 Score=58.14 Aligned_cols=79 Identities=14% Similarity=0.352 Sum_probs=60.8
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhcccc--ccCCCeEecCCCCCCHHHHHHHHHhhcCce-----------E---
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATAN--EANNNEVDISDIPGGPSAFETCAKFCYGMT-----------V--- 93 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~--e~~~~~V~L~d~pgGaeaFelv~~FcYg~~-----------i--- 93 (619)
|++.- +|+.|.+.+.+. ..|+-++.|+.... +.+...|.|++|++ .+++.|++||+-.+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 889999998855 68999999998642 11225789999985 99999999998321 1
Q ss_pred -----eeccccHhHHHHhHhhhCc
Q 007080 94 -----TLNAYNVVAARCAAEYLGM 112 (619)
Q Consensus 94 -----~It~~NV~~L~cAAe~LqM 112 (619)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1666689999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.11 E-value=0.0033 Score=54.67 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred EEEEECCEEEeecCcccc-cCCHHHHHHhccc----cccCCCeEecCCCCCCHHHHHHHHHhhcC-ceEeec-cccHhHH
Q 007080 31 VIVVVDDIKFHLHKFPLL-SKSACLQKLVATA----NEANNNEVDISDIPGGPSAFETCAKFCYG-MTVTLN-AYNVVAA 103 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLa-s~S~yFr~Lf~~~----~e~~~~~V~L~d~pgGaeaFelv~~FcYg-~~i~It-~~NV~~L 103 (619)
|+|.|||+.|.+-+..|. -...+|.+|+... .......+-|. -.|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999853 23344566663 246999999999999 777764 6788899
Q ss_pred HHhHhhhCcccc
Q 007080 104 RCAAEYLGMHES 115 (619)
Q Consensus 104 ~cAAe~LqM~e~ 115 (619)
+..|+|.++.+.
T Consensus 78 ~~Ea~fy~l~~l 89 (94)
T PF02214_consen 78 LEEAEFYGLDEL 89 (94)
T ss_dssp HHHHHHHT-HHH
T ss_pred HHHHHHcCCCcc
Confidence 999999999863
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.038 Score=56.72 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEEEECCEEEeecCcccccCCHHHHHHhcccc--ccC-CCeEecCCCCCCHHHHHHHHHhhcCceEee--ccccHhHHHH
Q 007080 31 VIVVVDDIKFHLHKFPLLSKSACLQKLVATAN--EAN-NNEVDISDIPGGPSAFETCAKFCYGMTVTL--NAYNVVAARC 105 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~--e~~-~~~V~L~d~pgGaeaFelv~~FcYg~~i~I--t~~NV~~L~c 105 (619)
|-+.|||..|..+|.-|--..+||+.|+...- +.+ ..-|-|.- .|.=|++|++|+=.|.+.| +.-++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998752 222 22354433 3589999999999887766 5567779999
Q ss_pred hHhhhCccccccccchHHHHHHHHHHhh
Q 007080 106 AAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 106 AAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
=|+|..+++ |++.|..=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999995 8889988776654
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.31 E-value=0.046 Score=49.08 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=59.4
Q ss_pred CCEEEeecCcccccCCHHHHHHhccc---cccCCCeEecCCCCCCHHHHHHHHHhh-----cCce------EeeccccHh
Q 007080 36 DDIKFHLHKFPLLSKSACLQKLVATA---NEANNNEVDISDIPGGPSAFETCAKFC-----YGMT------VTLNAYNVV 101 (619)
Q Consensus 36 gg~~F~lHK~vLas~S~yFr~Lf~~~---~e~~~~~V~L~d~pgGaeaFelv~~Fc-----Yg~~------i~It~~NV~ 101 (619)
+|++|-+-|- +|.-|+-+|+|+.+. .+....+|.+.+|| +..+|.+..|. |++. ++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7788988665 677899999999963 45566789999998 58999888765 4433 468888899
Q ss_pred HHHHhHhhhCc
Q 007080 102 AARCAAEYLGM 112 (619)
Q Consensus 102 ~L~cAAe~LqM 112 (619)
.|+.||+||+.
T Consensus 102 eLL~aAn~Lec 112 (112)
T KOG3473|consen 102 ELLMAANYLEC 112 (112)
T ss_pred HHHHHhhhhcC
Confidence 99999999973
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.66 E-value=0.014 Score=60.94 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CcccccCCceeeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCC---CeEecCCCCCCHHHHHHHHHh
Q 007080 11 DSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANN---NEVDISDIPGGPSAFETCAKF 87 (619)
Q Consensus 11 d~f~~~~~~~~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~---~~V~L~d~pgGaeaFelv~~F 87 (619)
.+|+++=-+ .....+..||-|......|++||+.|+++|++|+-+.....+... ..++.-+|. -.+|+..+.+
T Consensus 115 ~sf~kD~ad--~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~ 190 (401)
T KOG2838|consen 115 NSFLKDFAD--GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHS 190 (401)
T ss_pred hHHHHHHhh--hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHH
Confidence 566666322 334456779999999999999999999999999998886544332 345666776 4899999999
Q ss_pred hcCceEe---eccccHhHHHHhHhhhCcc
Q 007080 88 CYGMTVT---LNAYNVVAARCAAEYLGMH 113 (619)
Q Consensus 88 cYg~~i~---It~~NV~~L~cAAe~LqM~ 113 (619)
.|+|+.- +.-.|+..|-.-.+-++-.
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 9998764 3345565555555544443
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.09 E-value=0.095 Score=42.78 Aligned_cols=56 Identities=11% Similarity=0.353 Sum_probs=43.2
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcC
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYG 90 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg 90 (619)
|+|.- +|+.|.+.+.+ |-.|+.++.|+........ .|.|++|+| .+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~-~Ipl~~v~~--~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE-PIPLPNVSS--RILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT-EEEETTS-H--HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc-ccccCccCH--HHHHHHHHHHHh
Confidence 45555 88999998875 4579999999987533222 799999984 999999999973
No 21
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=92.51 E-value=0.023 Score=49.29 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=59.1
Q ss_pred hhchhhhhhhhCchhHHHHHHHHHhccccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHH
Q 007080 147 TKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKR 226 (619)
Q Consensus 147 C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~r 226 (619)
|.+++.+|+.+++ ..|..+|. .|. ..++ ......++|..|+++.+..
T Consensus 1 C~~i~~~A~~~~~-----~~L~~~~~--------~~i-------------------~~nf-~~v~~~~~f~~L~~~~l~~ 47 (103)
T PF07707_consen 1 CLSIYRLAEKYGL-----EELAEACL--------RFI-------------------AKNF-NEVSKSDEFLELPFDQLIE 47 (103)
T ss_dssp HHHHHHHHHHTT------HHHHHHHH--------HHH-------------------HHTH-HHHTTSHHHHCS-HHHHHH
T ss_pred ChhHHHHHHHcCh-----HHHHHHHH--------HHH-------------------HHHH-HHHccchhhhcCCHHHHHH
Confidence 7788999999987 56666554 221 0111 1122356899999999544
Q ss_pred HHHHHHhccC--CChhHHHHHHHHHHHhhcCCCccccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHH
Q 007080 227 CIMTIKTKAI--LSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKL 296 (619)
Q Consensus 227 VI~am~s~g~--~~~e~I~~aL~~Ya~~~L~~~~~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~L 296 (619)
+ +.+..+ .++..|.++++.|+++....+. .....|++.| + + +.+|..+|.+.
T Consensus 48 i---L~~~~l~v~~E~~v~~av~~W~~~~~~~r~---------~~~~~Ll~~i-R-~----~~l~~~~L~~~ 101 (103)
T PF07707_consen 48 I---LSSDDLNVSSEDDVFEAVLRWLKHNPENRE---------EHLKELLSCI-R-F----PLLSPEELQNV 101 (103)
T ss_dssp H---HHTSS--ECTCCCHHHHHHHHHHCTHHHHT---------TTHHHHHCCC-H-H----HCT-HHHHHHC
T ss_pred H---HhccccccccHHHHHHHHHHHHHhCHHHHH---------HHHHHHHHhC-C-c----ccCCHHHHHHH
Confidence 4 444444 4667999999999998866433 2345666655 4 2 34666666554
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.2 Score=49.02 Aligned_cols=89 Identities=11% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCEEEeecCcccccCCHHHHHHhcccc-ccCCCeEecCCCCCCHHHHHHHHHhhcCceE---------------------
Q 007080 36 DDIKFHLHKFPLLSKSACLQKLVATAN-EANNNEVDISDIPGGPSAFETCAKFCYGMTV--------------------- 93 (619)
Q Consensus 36 gg~~F~lHK~vLas~S~yFr~Lf~~~~-e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i--------------------- 93 (619)
+|+.|..-.. .|.+|.-++.++.... ..+...|-|+.|.| .+|..|+.|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~--~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVTS--KILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccCH--HHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 7888888766 4667889899887642 11114688888874 999999999996331
Q ss_pred ----eeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 94 ----TLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 94 ----~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
.+...++..|.-||.||+|. .|+..|+......+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHH
Confidence 24456889999999999999 58888988888776
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.94 E-value=0.42 Score=50.24 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=40.0
Q ss_pred EEeecCcccccCCHHHHHHhcc----cccc------CCCeEecCC--CCCCHHHHH-HHHHhhcCceEeecc
Q 007080 39 KFHLHKFPLLSKSACLQKLVAT----ANEA------NNNEVDISD--IPGGPSAFE-TCAKFCYGMTVTLNA 97 (619)
Q Consensus 39 ~F~lHK~vLas~S~yFr~Lf~~----~~e~------~~~~V~L~d--~pgGaeaFe-lv~~FcYg~~i~It~ 97 (619)
++.+||.+.+++|++||.|+-. ..|. ...+|.+.. || .+|. +++.|+||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchhh
Confidence 6789999999999999999753 1121 235676653 55 5665 457899998887643
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.35 E-value=6.9 Score=42.06 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=64.7
Q ss_pred eccCcceeEEEEECCEEEeecCcccccCCH-HHHHHhccc----cccCCCeEecC-CCCCCHHHHHHHHHhhcCceEeec
Q 007080 23 VASELATDVIVVVDDIKFHLHKFPLLSKSA-CLQKLVATA----NEANNNEVDIS-DIPGGPSAFETCAKFCYGMTVTLN 96 (619)
Q Consensus 23 ~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~-yFr~Lf~~~----~e~~~~~V~L~-d~pgGaeaFelv~~FcYg~~i~It 96 (619)
+..|-.--+++.|++..|..-+++|-+.-. -+-.||... ...+..+.++. || |...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 344555567889999999999998887633 344566542 22234567764 55 37899999999888888753
Q ss_pred c-ccHhHHHHhHhhhCcc
Q 007080 97 A-YNVVAARCAAEYLGMH 113 (619)
Q Consensus 97 ~-~NV~~L~cAAe~LqM~ 113 (619)
+ -.|-.|+.|.+||-++
T Consensus 168 ~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVP 185 (438)
T ss_pred CCCchHHHHhhcceEEee
Confidence 3 5678899999999887
No 25
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=73.98 E-value=3.4 Score=35.08 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=28.3
Q ss_pred hhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhc
Q 007080 214 EDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRRL 254 (619)
Q Consensus 214 EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~L 254 (619)
++|..|+.+.+.. .++++.+ ..+..|.++++.|+++..
T Consensus 35 ~~f~~L~~~~l~~---iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 35 EEFLELSLEQLLS---LLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred cHHhcCCHHHHHH---HhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 7889999998544 4444433 367889999999998764
No 26
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=73.37 E-value=5.4 Score=44.55 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=59.9
Q ss_pred EEEEECCEEEeecCcccccCC--HHHHHHhccc--cccCC-CeEecCCCCCCHHHHHHHHHhhcCceEeeccccHhH-HH
Q 007080 31 VIVVVDDIKFHLHKFPLLSKS--ACLQKLVATA--NEANN-NEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVA-AR 104 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S--~yFr~Lf~~~--~e~~~-~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~-L~ 104 (619)
|.+.|||+.|.--+.-|+.-. .+|-+|++.. ..... .-|-|. -.|+.|..+++|.-|+++.+..--... |+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 678999999999999888765 6999999853 12221 224443 236999999999999999995433344 44
Q ss_pred HhHhhhCccc
Q 007080 105 CAAEYLGMHE 114 (619)
Q Consensus 105 cAAe~LqM~e 114 (619)
-=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 4899999986
No 27
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=69.67 E-value=18 Score=41.13 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=64.2
Q ss_pred CcccccCCCCcccccCCceeeeccCcceeEEEEECCEEEeecCcccccC-CHHHHHHhcccc-----------ccCCCeE
Q 007080 2 KFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSK-SACLQKLVATAN-----------EANNNEV 69 (619)
Q Consensus 2 ~~mklgsk~d~f~~~~~~~~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~-S~yFr~Lf~~~~-----------e~~~~~V 69 (619)
.++..|..|+..+.++ ....-|+|.|||..+.+-+..|... =.++.++..... +...++.
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Ey 83 (477)
T KOG3713|consen 12 DVPVGGPEPEGIIRDG--------ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEY 83 (477)
T ss_pred cccccCCCCccccCCC--------CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCee
Confidence 3445566666665553 2244588999999999988877763 234444444211 1223455
Q ss_pred ecCCCCCCHHHHHHHHHhhcCceEeeccccHhHHHHhH--hhhCccc
Q 007080 70 DISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAA--EYLGMHE 114 (619)
Q Consensus 70 ~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~L~cAA--e~LqM~e 114 (619)
-+.- .|.+|..|++|-+||++.. +.+|..+.-.. +|-++.+
T Consensus 84 fFDR---~P~~F~~Vl~fYrtGkLH~-p~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 84 FFDR---HPGAFAYVLNFYRTGKLHV-PADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred eecc---ChHHHHHHHHHHhcCeecc-ccccchHHHHHHHHHhCCCh
Confidence 5543 3579999999999999997 66776655443 4556655
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=65.26 E-value=22 Score=36.97 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=62.0
Q ss_pred EEEEECCEEEeecCcccccC--CHHHHHHhccc----cccCCCeEecCCCCCCHHHHHHHHHhhcCceE-eeccccHhHH
Q 007080 31 VIVVVDDIKFHLHKFPLLSK--SACLQKLVATA----NEANNNEVDISDIPGGPSAFETCAKFCYGMTV-TLNAYNVVAA 103 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~--S~yFr~Lf~~~----~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i-~It~~NV~~L 103 (619)
|.+.+||+.|.--..-|.-+ =.-+-+||... .+.++.-+-|.- .|.-||-|+.|.-.|.+ ..+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 67889999999888888777 34688999863 233333444433 24899999999998875 4677899999
Q ss_pred HHhHhhhCccc
Q 007080 104 RCAAEYLGMHE 114 (619)
Q Consensus 104 ~cAAe~LqM~e 114 (619)
+.+|.|+|+-.
T Consensus 88 LeeArff~i~s 98 (302)
T KOG1665|consen 88 LEEARFFQILS 98 (302)
T ss_pred HHHhhHHhhHh
Confidence 99999999984
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=65.10 E-value=6.2 Score=43.52 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=55.7
Q ss_pred EEEeecCcccccCCHHHHHHhccc-cccC-CCe---EecCCCCCCHHHHHHHHHhhcCceEeeccccHhHHHHhHhhhCc
Q 007080 38 IKFHLHKFPLLSKSACLQKLVATA-NEAN-NNE---VDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGM 112 (619)
Q Consensus 38 ~~F~lHK~vLas~S~yFr~Lf~~~-~e~~-~~~---V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~L~cAAe~LqM 112 (619)
..+|+|.+++. +..||+.||++. .|+. +.+ ..|+.+. ....|++++|.|+-+-+|-++-...++--|..|-.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 45999999875 568999999985 4422 222 2233332 47899999999999999988888888888888877
Q ss_pred ccc
Q 007080 113 HES 115 (619)
Q Consensus 113 ~e~ 115 (619)
..+
T Consensus 378 ~~d 380 (516)
T KOG0511|consen 378 ADD 380 (516)
T ss_pred hhh
Confidence 643
No 30
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=64.40 E-value=5.6 Score=33.94 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=27.2
Q ss_pred eccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 95 LNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 95 It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
++...+..|+.||.||+|. .|+..|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~------~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIK------GLLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-H------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHh
Confidence 4667899999999999999 48889999998776
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=59.20 E-value=2.9 Score=46.05 Aligned_cols=87 Identities=21% Similarity=0.090 Sum_probs=54.3
Q ss_pred eeccCc--ceeEEEEE-CCEEEeecCcccccCCHHHHH-HhccccccCCCeE-ecCCCCCCHHHHHHHHHhhcCceEeec
Q 007080 22 YVASEL--ATDVIVVV-DDIKFHLHKFPLLSKSACLQK-LVATANEANNNEV-DISDIPGGPSAFETCAKFCYGMTVTLN 96 (619)
Q Consensus 22 ~~~~g~--~cDV~I~V-gg~~F~lHK~vLas~S~yFr~-Lf~~~~e~~~~~V-~L~d~pgGaeaFelv~~FcYg~~i~It 96 (619)
++.+++ -.|++..+ .|..|.+||+.|+++|.||.. +..-... ..+| .+.-+ +.+|+..++|.|-..=.+-
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~--~heI~~~~v~---~~~f~~flk~lyl~~na~~ 215 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ--GHEIEAHRVI---LSAFSPFLKQLYLNTNAEW 215 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc--cCchhhhhhh---HhhhhHHHHHHHHhhhhhh
Confidence 566665 33888877 788999999999999877654 3322211 1233 33445 4899999999997532233
Q ss_pred cccHhHHHHhHhhhCcc
Q 007080 97 AYNVVAARCAAEYLGMH 113 (619)
Q Consensus 97 ~~NV~~L~cAAe~LqM~ 113 (619)
+.--.+|+.-..-++..
T Consensus 216 ~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 216 KDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhHHHHHHhhhhhccHH
Confidence 33334555555555543
No 32
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=58.58 E-value=6.6 Score=35.00 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=34.1
Q ss_pred hcCCCCCCcchHHHHHHHHHHhcccCCHHHHhhhccccccCCCC
Q 007080 416 VSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLS 459 (619)
Q Consensus 416 lP~~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~mdc~KLS 459 (619)
+|++.......||+|+..||.+...... .|-++++.-|-+.++
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~ 72 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLV 72 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceE
Confidence 4555557788999999999999987775 888888887776643
No 33
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=57.15 E-value=64 Score=32.23 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=60.5
Q ss_pred EEEEECCEEEeecCcccccCC-HHHHHHhcccc----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHhHHHH
Q 007080 31 VIVVVDDIKFHLHKFPLLSKS-ACLQKLVATAN----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARC 105 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S-~yFr~Lf~~~~----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~~L~c 105 (619)
|-+.|||..|.--|.-|.--+ .|+.+++.... +.+..--.|-|= .|.-|.-|++|.--|++-|+.--=..++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 567899999999999999888 45555554332 222223334332 35899999999999999999866667888
Q ss_pred hHhhhCccc
Q 007080 106 AAEYLGMHE 114 (619)
Q Consensus 106 AAe~LqM~e 114 (619)
-|+|...+.
T Consensus 101 EAefyn~~~ 109 (210)
T KOG2715|consen 101 EAEFYNDPS 109 (210)
T ss_pred hhhccCChH
Confidence 899998884
No 34
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.36 E-value=24 Score=36.70 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=62.8
Q ss_pred CEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHh---HHHHhHhhhCc
Q 007080 37 DIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVV---AARCAAEYLGM 112 (619)
Q Consensus 37 g~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~---~L~cAAe~LqM 112 (619)
+..+..|+.++++++.-|+.|+... .+.....+.+.+.. ++.|+.+..|.|...-..+..++. .+.++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999998864 22223344666654 588999999999854444444443 66666666555
Q ss_pred cccccccchHHHHHHHHHHhh
Q 007080 113 HESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 113 ~e~~~~gNL~~~ce~FL~~~l 133 (619)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 5 47788888888766
No 35
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=54 Score=31.40 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=62.9
Q ss_pred EEE-EECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEe---------------
Q 007080 31 VIV-VVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVT--------------- 94 (619)
Q Consensus 31 V~I-~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~--------------- 94 (619)
|.| ..+|+.|.+.+. .|-+|-.++.|+....+.+- .+.++.+. +..|..+.+||--.+=.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 344 358899999876 68889999999887644332 23344553 68999999999632211
Q ss_pred ----------eccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 95 ----------LNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 95 ----------It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
+...-...+.-||.||++.. |++.||.-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 12223456777888888885 7777887777665
No 36
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=33.69 E-value=49 Score=28.29 Aligned_cols=76 Identities=13% Similarity=0.305 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhhcCCC---CCChhhHHHHHHhhcCCCCCCcchHHHHHHHHHHhcccCCHHHHhhhccccccCCCCHHH
Q 007080 386 MVAKLMDGYLTEIAKDH---NLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDA 462 (619)
Q Consensus 386 ~VakLvD~YLaEiA~D~---nL~~skF~~Lae~lP~~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~mdc~KLS~EA 462 (619)
++-+.|.....+|..++ +|++..+..+... ++-...+.|.+|.||-.|++.+|.-.+..-.+|.+.+...-||++-
T Consensus 19 ~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~ 97 (103)
T PF07707_consen 19 ACLRFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEE 97 (103)
T ss_dssp HHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHH
T ss_pred HHHHHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHH
Confidence 33344444455666544 7888888877764 5555678899999999999999876666666677777666666653
No 37
>PHA00617 ribbon-helix-helix domain containing protein
Probab=33.50 E-value=68 Score=28.13 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.7
Q ss_pred cccChhHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 007080 217 CELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRR 253 (619)
Q Consensus 217 ~~L~idl~~rVI~am~s~g~~~~e~I~~aL~~Ya~~~ 253 (619)
..|+.++.+++-...+..|..+.++|-+||..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999988999999999998776
No 38
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.80 E-value=31 Score=28.39 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhcccCCH
Q 007080 426 GLYRAIDMYLMEHQAISK 443 (619)
Q Consensus 426 gLYRAIDiYLK~Hp~ls~ 443 (619)
-||.|+.-||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 599999999999998764
No 39
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=29.37 E-value=46 Score=36.07 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=29.2
Q ss_pred EEEee-cCcccccCCHHHHHHhccc-cccCCCeEecCC-CCCCHHH
Q 007080 38 IKFHL-HKFPLLSKSACLQKLVATA-NEANNNEVDISD-IPGGPSA 80 (619)
Q Consensus 38 ~~F~l-HK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d-~pgGaea 80 (619)
.+|.. -|+++++.-.-|+.+|... .|...+.+.+++ ||||.|.
T Consensus 160 ~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~ 205 (415)
T COG3919 160 VHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGEN 205 (415)
T ss_pred ceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcc
Confidence 34433 4667777778888888864 455566777765 7888665
No 40
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.00 E-value=40 Score=34.48 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHhhc--CCCCCCcchHHHHHHHHHHhcccCCHHHH
Q 007080 413 AKLVS--GISRPTHDGLYRAIDMYLMEHQAISKSER 446 (619)
Q Consensus 413 ae~lP--~~aR~~hDgLYRAIDiYLK~Hp~ls~~Er 446 (619)
.+-+| +..+..-+|=|+||..|||.||+==|.++
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccch
Confidence 34556 55666789999999999999996555444
No 41
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.50 E-value=94 Score=22.44 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.0
Q ss_pred ccChhHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 007080 218 ELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYR 252 (619)
Q Consensus 218 ~L~idl~~rVI~am~s~g~~~~e~I~~aL~~Ya~~ 252 (619)
.|+.+.++++=...+..|+-..++|-.+|..|+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 46778888888888888987788999999998763
No 42
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.29 E-value=41 Score=29.23 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHhccc
Q 007080 425 DGLYRAIDMYLMEHQA 440 (619)
Q Consensus 425 DgLYRAIDiYLK~Hp~ 440 (619)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3699999999999964
No 43
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=25.82 E-value=64 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=21.3
Q ss_pred cCCCCCCcchHHHHHHHHHHhcccCCHHHHhhh
Q 007080 417 SGISRPTHDGLYRAIDMYLMEHQAISKSERKKI 449 (619)
Q Consensus 417 P~~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~l 449 (619)
|..++| |+.|.| .+.+|.+|+++|-..+
T Consensus 5 pnl~~p--D~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 5 PNLADP--DDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred CCCCCh--hHHHHH---HHHHHhCCCHHHHHHH
Confidence 444444 999998 6889999999986544
No 44
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.19 E-value=1.1e+02 Score=34.79 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhhhhhhcCCC----------------CCChhhHHHHHHhhcCCCC-----CCcch---------HHHHH
Q 007080 382 ASKLMVAKLMDGYLTEIAKDH----------------NLPVAKFVDLAKLVSGISR-----PTHDG---------LYRAI 431 (619)
Q Consensus 382 ~~~~~VakLvD~YLaEiA~D~----------------nL~~skF~~Lae~lP~~aR-----~~hDg---------LYRAI 431 (619)
....+|.+.+-.+|.+++.+| +|++-.|..|+|-.-++.+ .+.|. +|||+
T Consensus 343 ~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRav 422 (523)
T KOG2016|consen 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAV 422 (523)
T ss_pred hhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHH
Confidence 456889999999999999884 5666677778776655444 33334 79999
Q ss_pred HHHHHhcccCCH
Q 007080 432 DMYLMEHQAISK 443 (619)
Q Consensus 432 DiYLK~Hp~ls~ 443 (619)
|.||+.|-....
T Consensus 423 drfl~~~gk~pG 434 (523)
T KOG2016|consen 423 DRFLKEKGKYPG 434 (523)
T ss_pred HHHHHHhcCCCC
Confidence 999999876655
No 45
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=21.40 E-value=1.8e+02 Score=24.32 Aligned_cols=65 Identities=14% Similarity=0.341 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhhcCCC---CCChhhHHHHHHhhcCCC--CCCcchHHHHHHHHHHhcccCCHHHHhhhccccccCC
Q 007080 386 MVAKLMDGYLTEIAKDH---NLPVAKFVDLAKLVSGIS--RPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRK 457 (619)
Q Consensus 386 ~VakLvD~YLaEiA~D~---nL~~skF~~Lae~lP~~a--R~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~mdc~K 457 (619)
++-+.|.....+++.++ +|++..+.. .+.... -...+.+|.||-.+++.++ .+|+.+.++|.+=+
T Consensus 19 ~~~~~i~~nf~~~~~~~~f~~L~~~~l~~---iL~~d~l~v~~E~~v~~av~~W~~~~~----~~~~~~~~ll~~ir 88 (101)
T smart00875 19 KALRFILKNFLEVAQSEEFLELSLEQLLS---LLSSDDLNVPSEEEVFEAVLRWVKHDP----ERRRHLPELLSHVR 88 (101)
T ss_pred HHHHHHHHHHHHHhcCcHHhcCCHHHHHH---HhCcccCCCCCHHHHHHHHHHHHHCCH----HHHHHHHHHHHhCC
Confidence 33455555566666554 455555554 444322 2457889999999999876 34445666666543
No 46
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=21.34 E-value=89 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.524 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHhc
Q 007080 411 DLAKLVSGISRPTHDGLYRAIDMYLMEH 438 (619)
Q Consensus 411 ~Lae~lP~~aR~~hDgLYRAIDiYLK~H 438 (619)
.|.+..|+-++|+.|-||.|+..-+|+-
T Consensus 38 ~L~~~yp~i~~Ps~e~l~~~L~~Li~er 65 (80)
T PF10264_consen 38 HLRKHYPGIAIPSQEVLYNTLGTLIKER 65 (80)
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4678899999999999999999999863
Done!