Query 007080
Match_columns 619
No_of_seqs 300 out of 976
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 99.9 3.4E-29 1.1E-33 251.4 5.1 227 21-315 24-256 (256)
2 3i3n_A Kelch-like protein 11; 99.9 1.9E-28 6.7E-33 249.0 7.1 229 21-317 25-265 (279)
3 3htm_A Speckle-type POZ protei 99.8 1.2E-21 4.2E-26 183.9 8.0 122 21-159 27-149 (172)
4 2vkp_A BTB/POZ domain-containi 99.8 2.4E-21 8.2E-26 169.6 7.8 103 22-133 2-109 (109)
5 4eoz_A Speckle-type POZ protei 99.8 4.7E-22 1.6E-26 181.7 2.5 122 21-159 18-140 (145)
6 2if5_A Zinc finger and BTB dom 99.8 5.4E-21 1.8E-25 170.6 7.2 102 21-130 18-120 (120)
7 3b84_A Zinc finger and BTB dom 99.8 2.5E-21 8.5E-26 173.5 4.4 100 22-132 18-117 (119)
8 2vpk_A Myoneurin; transcriptio 99.8 6.1E-21 2.1E-25 169.6 6.3 99 21-130 15-115 (116)
9 1r29_A B-cell lymphoma 6 prote 99.8 9.4E-21 3.2E-25 170.9 7.5 103 21-132 22-126 (127)
10 1buo_A POZ domain, protein (pr 99.8 7.8E-21 2.7E-25 170.5 6.8 101 21-133 21-121 (121)
11 2yy9_A Zinc finger and BTB dom 99.8 3.5E-21 1.2E-25 176.6 3.3 103 21-134 18-120 (135)
12 3ga1_A Nucleus accumbens-assoc 99.8 6.7E-21 2.3E-25 172.8 4.8 100 22-132 27-127 (129)
13 2z8h_A Transcription regulator 99.8 1.2E-20 4.1E-25 173.2 6.0 105 21-134 29-134 (138)
14 2ppi_A Gigaxonin; BTB domain, 99.8 1.4E-20 4.8E-25 174.7 6.0 101 22-130 41-144 (144)
15 3ohu_A Transcription regulator 99.8 6.8E-21 2.3E-25 171.4 3.6 100 21-129 25-125 (125)
16 2q81_A MIZ-1 protein; BTB/POZ 99.8 1E-20 3.6E-25 169.4 4.6 98 21-130 20-117 (119)
17 3m5b_A Zinc finger and BTB dom 99.8 2.7E-20 9.3E-25 168.0 5.7 95 22-132 24-118 (119)
18 2ihc_A Transcription regulator 99.8 2.2E-20 7.5E-25 168.5 3.7 101 21-130 22-123 (124)
19 3hqi_A Speckle-type POZ protei 99.8 2.4E-19 8.2E-24 184.4 7.5 131 22-169 168-302 (312)
20 3fkc_A Transcriptional regulat 99.7 1.3E-18 4.5E-23 155.6 5.1 87 22-114 25-112 (116)
21 2ast_A S-phase kinase-associat 99.4 3.8E-13 1.3E-17 127.3 5.2 95 31-134 3-127 (159)
22 4ajy_C Transcription elongatio 99.2 2E-11 6.8E-16 106.5 6.2 79 31-112 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 1.7E-10 5.8E-15 107.2 6.4 91 31-133 4-121 (141)
24 2p1m_A SKP1-like protein 1A; F 98.9 3E-10 1E-14 107.6 0.5 92 31-133 6-125 (160)
25 1hv2_A Elongin C, ELC1; protei 98.3 5.5E-07 1.9E-11 78.9 5.6 79 31-112 6-99 (99)
26 2fnj_C Transcription elongatio 98.3 5.8E-07 2E-11 78.3 4.9 79 31-112 3-96 (96)
27 3v7d_A Suppressor of kinetocho 98.2 1.1E-06 3.8E-11 84.1 5.9 95 30-133 8-133 (169)
28 1vcb_B Protein (elongin C); tu 97.6 3.1E-05 1.1E-09 69.4 4.1 79 31-112 19-112 (112)
29 3drz_A BTB/POZ domain-containi 97.4 0.00036 1.2E-08 61.6 7.5 92 30-130 7-105 (107)
30 2eqx_A Kelch repeat and BTB do 96.7 0.00027 9.3E-09 61.9 0.5 89 143-277 9-97 (105)
31 3drx_A BTB/POZ domain-containi 95.7 0.024 8.1E-07 55.8 7.9 94 30-132 13-113 (202)
32 3kvt_A Potassium channel prote 94.9 0.0091 3.1E-07 53.6 2.0 82 31-115 7-92 (115)
33 1t1d_A Protein (potassium chan 92.9 0.091 3.1E-06 45.9 4.5 82 31-115 3-89 (100)
34 1s1g_A Potassium voltage-gated 91.6 0.1 3.6E-06 47.3 3.3 80 30-115 14-99 (124)
35 1nn7_A Potassium channel KV4.2 91.6 0.076 2.6E-06 46.7 2.3 79 31-115 2-86 (105)
36 2nz0_B Potassium voltage-gated 90.4 0.14 4.9E-06 47.3 3.1 81 29-115 35-121 (140)
37 1pd7_B MAD1; PAH2, SIN3, eukar 70.0 1.3 4.4E-05 29.6 0.7 16 98-113 3-18 (26)
38 1vjh_A BET V I allergen family 49.7 11 0.00037 33.4 3.3 32 398-440 91-122 (122)
39 2r9r_B Paddle chimera voltage 47.7 9.9 0.00034 41.8 3.2 83 30-115 53-140 (514)
40 2eqx_A Kelch repeat and BTB do 29.1 42 0.0014 28.5 3.6 35 93-133 6-40 (105)
41 3b0b_C CENP-X, centromere prot 27.4 55 0.0019 27.4 3.9 43 338-398 6-48 (81)
42 3fs7_A Parvalbumin, thymic; ca 23.8 2.1E+02 0.0071 23.0 6.9 60 400-463 21-83 (109)
43 4dra_E Centromere protein X; D 20.7 62 0.0021 27.4 2.9 43 338-398 10-52 (84)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=3.4e-29 Score=251.37 Aligned_cols=227 Identities=13% Similarity=0.151 Sum_probs=167.7
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-c--ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N--EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA 97 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~--e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~ 97 (619)
.++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. . ++...+|.|++++ +++|+.+++|+|||++.++.
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence 47899999999999999999999999999999999999874 3 5567799999997 79999999999999999999
Q ss_pred ccHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCC
Q 007080 98 YNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSK 177 (619)
Q Consensus 98 ~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~ 177 (619)
+||..++.||++|||++ |+..|+.||.+.+ ...||..++.+|+.+++ +.|..++.
T Consensus 102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~~~~~----- 156 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCL-----HHVHYLAT----- 156 (256)
T ss_dssp CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTC-----HHHHHHHH-----
T ss_pred hHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCc-----HHHHHHHH-----
Confidence 99999999999999995 8899999999998 46799999999999986 45554443
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhcC
Q 007080 178 VDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRRLS 255 (619)
Q Consensus 178 ~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~L~ 255 (619)
.|. ..++ ...+-.+++..|+.+.+..+ +++..+ .+++.|+++++.|+++..+
T Consensus 157 ---~~i-------------------~~~f-~~v~~~~~f~~L~~~~l~~l---L~~d~L~v~~E~~v~~av~~W~~~~~~ 210 (256)
T 3hve_A 157 ---EYL-------------------ETHF-RDVSSTEEFLELSPQKLKEV---ISLEKLNVGNERYVFEAVIRWIAHDTE 210 (256)
T ss_dssp ---HHH-------------------HHHH-HHHTTCHHHHSSCHHHHHHH---HHCC-------CTTHHHHTTTCCC--C
T ss_pred ---HHH-------------------HHHH-HHHhCCcchhcCCHHHHHHH---HccCCCCCCCHHHHHHHHHHHHHcCHH
Confidence 111 0111 11233578999999995554 444443 4577899999999998876
Q ss_pred CCccccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHHHhhhhcCC-HHHHHHHHH
Q 007080 256 GFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSG-DMVKAQLVR 315 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR~A~~L~as-~~Cr~~LEk 315 (619)
.+. .....|++.| + + +.+|..||...++...++..+ +.||..|++
T Consensus 211 ~R~---------~~~~~ll~~V-R-f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 211 IRK---------VHMKDVMSAL-W-V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp CST---------TTHHHHHHHH-H-H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred HHH---------HHHHHHHHhC-C-C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 554 3567899998 7 4 468889999999999999888 789998875
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.95 E-value=1.9e-28 Score=249.04 Aligned_cols=229 Identities=14% Similarity=0.189 Sum_probs=179.3
Q ss_pred eeeccCcceeEEEEEC---CEEEeecCcccccCCHHHHHHhccc-cccCCCeEecC------CCCCCHHHHHHHHHhhcC
Q 007080 21 RYVASELATDVIVVVD---DIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDIS------DIPGGPSAFETCAKFCYG 90 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vg---g~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~------d~pgGaeaFelv~~FcYg 90 (619)
.++.+|.+|||+|.|| |+.|++||.+|+++|+||++||++. .|+.+.+|+|+ +++ +++|+.+++|+||
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 25 EQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc
Confidence 3788999999999998 9999999999999999999999975 67777899998 554 7999999999999
Q ss_pred ceEeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHH
Q 007080 91 MTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATK 170 (619)
Q Consensus 91 ~~i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~k 170 (619)
|++.++.+||..++.||++|||++ |+..|+.||.+.+ ...||..++.+|+.+++ +.|..+
T Consensus 103 g~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~~~ 162 (279)
T 3i3n_A 103 GRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKL---------HLSNCVAIHSLAHMYTL-----SQLALK 162 (279)
T ss_dssp SEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC---------CTTTHHHHHHHHHHTTC-----HHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcC---------CcchHHHHHHHHHHcCc-----HHHHHH
Confidence 999999999999999999999985 8899999999988 46799999999999996 445444
Q ss_pred hccccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHH
Q 007080 171 ACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKA 248 (619)
Q Consensus 171 A~~d~~~~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~ 248 (619)
|. .|. ..++ ...+..+++..|+.+. +...+++..+ .+++.|+++++.
T Consensus 163 ~~--------~~i-------------------~~~f-~~v~~~~~f~~L~~~~---l~~lL~~d~L~v~sE~~vf~av~~ 211 (279)
T 3i3n_A 163 AA--------DMI-------------------RRNF-HKVIQDEEFYTLPFHL---IRDWLSDLEITVDSEEVLFETVLK 211 (279)
T ss_dssp HH--------HHH-------------------HHTH-HHHTTSSGGGGSCHHH---HHHHHTCSSCCCSCHHHHHHHHHH
T ss_pred HH--------HHH-------------------HHHH-HHHhcCcChhcCCHHH---HHHHhcCcCCCCCCHHHHHHHHHH
Confidence 43 111 0111 1123457889999998 5555555544 468899999999
Q ss_pred HHHhhcCCCccccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 007080 249 YAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRI 317 (619)
Q Consensus 249 Ya~~~L~~~~~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR~A~~L~as~~Cr~~LEkrI 317 (619)
|+++..+.+. .....|++.| + + +.+|..+|..+++...++..++.|+..|.+-.
T Consensus 212 W~~~~~~~r~---------~~~~~ll~~V-R-f----~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~ 265 (279)
T 3i3n_A 212 WVQRNAEERE---------RYFEELFKLL-R-L----SQMKPTYLTRHVKPERLVANNEVCVKLVADAV 265 (279)
T ss_dssp HHHTTHHHHT---------TTHHHHHTTS-C-G----GGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHH
T ss_pred HHHcCHHHHH---------HHHHHHHHhc-C-C----CCCCHHHHHHHhhccchhcCCHHHHHHHHHHH
Confidence 9998765433 2345666665 5 4 56899999999999999999999998876543
No 3
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=183.87 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=113.3
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
+++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .|....+|.|++++ +++|+.+++|+||+++.++..|
T Consensus 27 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~ 104 (172)
T 3htm_A 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 104 (172)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHH
Confidence 47888999999999999999999999999999999999975 67777899999987 7999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCc
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKV 159 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~i 159 (619)
+..++.+|++|+|++ |...|+.||.+.+ ...||..++.+|+.+++
T Consensus 105 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l---------~~~n~~~~~~~A~~~~~ 149 (172)
T 3htm_A 105 ADDLLAAADKYALER------LKVMCEDALCSNL---------SVENAAEILILADLHSA 149 (172)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHHTC---------CTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHhC---------CHHHHHHHHHHHHHhCc
Confidence 999999999999995 8899999999988 46799999999999986
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=169.62 Aligned_cols=103 Identities=26% Similarity=0.335 Sum_probs=92.1
Q ss_pred eeccCcceeEEEEECC----EEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeec
Q 007080 22 YVASELATDVIVVVDD----IKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLN 96 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg----~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It 96 (619)
++.++.+|||+|.|+| +.|++||.+|+++|+||++||.+. .|+. .+|.|++++ +++|+.+++|+||+++.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~ 78 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLE 78 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCC
Confidence 6788999999999988 999999999999999999999975 5555 789999987 6999999999999999999
Q ss_pred cccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 97 AYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 97 ~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
.+||..++.+|++|+|++ |...|+.||.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 999999999999999995 8899999998764
No 5
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.83 E-value=4.7e-22 Score=181.72 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=92.9
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .++...+|.|++++ +++|+.+++|+||+++.++..|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~ 95 (145)
T 4eoz_A 18 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 95 (145)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHHH
Confidence 47788999999999999999999999999999999999975 55556789999987 7999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCc
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKV 159 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~i 159 (619)
+..++.+|++|+|++ |...|+.||.+.+ ...||..++.+|+.+++
T Consensus 96 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l---------~~~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 96 ADDLLAAADKYALER------LKVMCEDALCSNL---------SVENAAEILILADLHSA 140 (145)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHhCHHH------HHHHHHHHHHHhC---------CHHHHHHHHHHHHHhCH
Confidence 999999999999995 8899999999988 57799999999999986
No 6
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.83 E-value=5.4e-21 Score=170.64 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=92.2
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .|+...+|.|++++ +++|+.+++|+||+++.++.+|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~ 95 (120)
T 2if5_A 18 EQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTAN 95 (120)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHH
Confidence 36788999999999999999999999999999999999975 66677899999987 6999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHH
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
+..++.||++|+|++ |++.|+.||+
T Consensus 96 ~~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 96 VGDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 999999999999995 8899999984
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.82 E-value=2.5e-21 Score=173.50 Aligned_cols=100 Identities=20% Similarity=0.109 Sum_probs=91.0
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHh
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVV 101 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~ 101 (619)
++.+|.+|||+|.|||+.|++||.+|+++|+||++||.... ..+|.|++++ +++|+.+++|+|||++.++.+||.
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~ 92 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRD 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHH
Confidence 67889999999999999999999999999999999998753 4689999987 699999999999999999999999
Q ss_pred HHHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 102 AARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 102 ~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
.|+.||++|+|++ |.+.|+.||.+.
T Consensus 93 ~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 93 QVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 9999999999995 889999999764
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.82 E-value=6.1e-21 Score=169.58 Aligned_cols=99 Identities=23% Similarity=0.390 Sum_probs=90.9
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecC--CCCCCHHHHHHHHHhhcCceEeeccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDIS--DIPGGPSAFETCAKFCYGMTVTLNAY 98 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~--d~pgGaeaFelv~~FcYg~~i~It~~ 98 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ....|.|+ +++ +++|+.+++|+|||++.++.+
T Consensus 15 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 15 KQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVK--ADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCC--HHHHHHHHHHHcCCCcccCHH
Confidence 36788999999999999999999999999999999999876 24577787 886 699999999999999999999
Q ss_pred cHhHHHHhHhhhCccccccccchHHHHHHHHH
Q 007080 99 NVVAARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 99 NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
||..++.||++|||++ |++.|+.||.
T Consensus 90 ~v~~ll~~A~~~~i~~------L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEE------VVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 9999999999999984 8899999985
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.82 E-value=9.4e-21 Score=170.91 Aligned_cols=103 Identities=27% Similarity=0.433 Sum_probs=95.1
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEec-CCCCCCHHHHHHHHHhhcCceEeeccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDI-SDIPGGPSAFETCAKFCYGMTVTLNAY 98 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L-~d~pgGaeaFelv~~FcYg~~i~It~~ 98 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .| ....|.| ++++ +++|+.+++|+||+++.++..
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~~~~ 98 (127)
T 1r29_A 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEIN--PEGFNILLDFMYTSRLNLREG 98 (127)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCC--HHHHHHHHHHHcCCCcCcCHH
Confidence 37788999999999999999999999999999999999975 45 6678999 8887 699999999999999999999
Q ss_pred cHhHHHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 99 NVVAARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 99 NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
||..|+.||++|+|++ |.+.|+.||.++
T Consensus 99 ~~~~ll~~A~~~~i~~------L~~~c~~~l~~~ 126 (127)
T 1r29_A 99 NIMAVMATAMYLQMEH------VVDTCRKFIKAS 126 (127)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHhc
Confidence 9999999999999995 889999999753
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.82 E-value=7.8e-21 Score=170.53 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=93.4
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ..+|.|++++ +++|+.+++|+|||++.++.+|+
T Consensus 21 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~ 94 (121)
T 1buo_A 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDL 94 (121)
T ss_dssp HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----CcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHH
Confidence 37788999999999999999999999999999999999863 4589999997 69999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
..++.||++|+|++ |.+.|+.||.+.+
T Consensus 95 ~~ll~~A~~~~i~~------L~~~c~~~l~~~I 121 (121)
T 1buo_A 95 DDLLYAAEILEIEY------LEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHH------HHHHHHHHHHHhC
Confidence 99999999999995 8899999998753
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.81 E-value=3.5e-21 Score=176.58 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=90.3
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.... ..+|.|++++ +++|+.+++|+||+++.++.+||
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v 92 (135)
T 2yy9_A 18 KQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNR 92 (135)
T ss_dssp HHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHH
Confidence 378899999999999999999999999999999999998753 4579999987 69999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHHHhhh
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFISSSIL 134 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~ 134 (619)
..|+.||++|||++ |++.|+.||.+.+.
T Consensus 93 ~~ll~~A~~l~i~~------L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 93 DQVLLAAKELRVPE------AVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHCCC----
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHhcc
Confidence 99999999999995 88999999988763
No 12
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.7e-21 Score=172.78 Aligned_cols=100 Identities=23% Similarity=0.347 Sum_probs=85.6
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecC-CCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDIS-DIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~-d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ...+|.|+ +++ +++|+.+++|+|||++.++.+||
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~ 101 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQ 101 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTH
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHH
Confidence 6778999999999999999999999999999999999875 45689996 887 79999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
..|+.||++|||++ |++.|+.||.+.
T Consensus 102 ~~ll~~A~~~~i~~------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 102 DLLMYTAGFLQIQE------IMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHTTBTT------SSCC--------
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence 99999999999996 567899999875
No 13
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=173.20 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=94.8
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecC-CCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDIS-DIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~-d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+.... ...|.|+ +++ +++|+.+++|+|||++.++.+|
T Consensus 29 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 29 DQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-ELTVTLPEEVT--VKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT-TEEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC-CceEEeCCCCC--HHHHHHHHHHhcCCCcccCHHH
Confidence 37788999999999999999999999999999999999975321 3578885 786 6999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHHHhhh
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFISSSIL 134 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~ 134 (619)
|..|+.||++|||++ |++.|+.||.+.+.
T Consensus 106 v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHN------IEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHHHTCGG------GHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHHhcc
Confidence 999999999999995 88999999998874
No 14
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=174.72 Aligned_cols=101 Identities=13% Similarity=0.188 Sum_probs=89.7
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-c--ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccc
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N--EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAY 98 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~--e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~ 98 (619)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... . ++...+|.|++++ +++|+.+++|+|||++.++.+
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHH
Confidence 7889999999999999999999999999999999999864 3 3566789999997 699999999999999999999
Q ss_pred cHhHHHHhHhhhCccccccccchHHHHHHHHH
Q 007080 99 NVVAARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 99 NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
||..|+.||++|+|++ |++.|+.||.
T Consensus 119 ~v~~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHhC
Confidence 9999999999999995 8899999974
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=6.8e-21 Score=171.40 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=89.6
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCC-CCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISD-IPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d-~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||...... ...|.|++ ++ +++|+.+++|+|||++.++.+|
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 25 DQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVT--ARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-SCEEECCTTCC--HHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-CcEEEeCCCCC--HHHHHHHHHhHcCCceEECHHH
Confidence 37889999999999999999999999999999999999975322 56899988 86 7999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHH
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFI 129 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL 129 (619)
|..|+.||++|||++ |.+.|++||
T Consensus 102 v~~ll~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSS------CTTSSCCCC
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHhC
Confidence 999999999999996 556777765
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.80 E-value=1e-20 Score=169.45 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=90.1
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...|.|++++ +++|+.+++|+|||++.++.+||
T Consensus 20 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 20 QQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----KDVVHLDISN--AAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----CSGGGGGGCC--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 36788999999999999999999999999999999999863 3468888876 69999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHH
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
..++.||++|||++ |++.|+.||.
T Consensus 94 ~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 99999999999995 8899999985
No 17
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=2.7e-20 Score=167.98 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=85.0
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccHh
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVV 101 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV~ 101 (619)
.|.+|.+|||+|.|+|+.|++||.+|+++|+||++ ....|+|++++ +++|+.+++|+|||++.|+.+||.
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~ 93 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELR 93 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHH
Confidence 36779999999999999999999999999999985 23478999997 799999999999999999999999
Q ss_pred HHHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 102 AARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 102 ~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
.|+.||++|||++ |++.|++++.+.
T Consensus 94 ~ll~aA~~l~i~~------l~~~C~~~~~~~ 118 (119)
T 3m5b_A 94 PLQEAARALGVQS------LEEACWRARGDR 118 (119)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHHC---
T ss_pred HHHHHHHHhCCHH------HHHHHHHHHhhc
Confidence 9999999999995 889999998753
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.79 E-value=2.2e-20 Score=168.48 Aligned_cols=101 Identities=18% Similarity=0.310 Sum_probs=88.8
Q ss_pred eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecC-CCCCCHHHHHHHHHhhcCceEeecccc
Q 007080 21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDIS-DIPGGPSAFETCAKFCYGMTVTLNAYN 99 (619)
Q Consensus 21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~-d~pgGaeaFelv~~FcYg~~i~It~~N 99 (619)
.++.+|.+|||+|.|+|+.|++||.+|+++|+||++||.+... +..+|.|+ +++ +++|+.+++|+|||++.++.+|
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~-e~~~i~l~~~v~--~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 22 DQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD-GELNITLPEEVT--VKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----CEEEECCTTSC--HHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCC-CCceEeecCCcC--HHHHHHHHHHhcCCCcccCHHH
Confidence 3778899999999999999999999999999999999997532 13578884 786 7999999999999999999999
Q ss_pred HhHHHHhHhhhCccccccccchHHHHHHHHH
Q 007080 100 VVAARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 100 V~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
|..|+.||++|||++ |++.|+.||.
T Consensus 99 v~~ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSS------CCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHH------HHHHHHHHHh
Confidence 999999999999996 5678998875
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.77 E-value=2.4e-19 Score=184.43 Aligned_cols=131 Identities=17% Similarity=0.240 Sum_probs=114.1
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV 100 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV 100 (619)
++.++.+|||+|.|+|++|++||.+||++|+||++||.+. .|....+|+|++++ +++|+.+++|+||+++.++..|+
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHH
Confidence 5578899999999999999999999999999999999974 67777899999997 79999999999999999999999
Q ss_pred hHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCc---hhHHHHHHHH
Q 007080 101 VAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKV---ASHCIEAIAT 169 (619)
Q Consensus 101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~i---v~rcidsLA~ 169 (619)
..|+.||++|+|+. |+..|+.||.+.+ ...||..++.+|+.+++ ..+|++-|+.
T Consensus 246 ~~ll~~A~~~~~~~------l~~~c~~~l~~~~---------~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 246 DDLLAAADKYALER------LKVMCEDALCSNL---------SVENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHHTTC---------CTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHH------HHHHHHHHHHccC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999994 8899999999988 46799999999999864 4555555544
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.73 E-value=1.3e-18 Score=155.63 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=81.9
Q ss_pred eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCceE-eeccccH
Q 007080 22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTV-TLNAYNV 100 (619)
Q Consensus 22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i-~It~~NV 100 (619)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ..+|+|++++ +++|+.+++|+|||++ .++.+||
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~ 98 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLL 98 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHH
Confidence 7788999999999999999999999999999999999875 4589999997 7999999999999999 7999999
Q ss_pred hHHHHhHhhhCccc
Q 007080 101 VAARCAAEYLGMHE 114 (619)
Q Consensus 101 ~~L~cAAe~LqM~e 114 (619)
..++.||++|||+.
T Consensus 99 ~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 99 DELIKSGQLLGVKF 112 (116)
T ss_dssp HHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCccc
Confidence 99999999999985
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.35 E-value=3.8e-13 Score=127.25 Aligned_cols=95 Identities=12% Similarity=0.238 Sum_probs=82.0
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhcc-c-c-ccCCCeEecCCCCCCHHHHHHHHHhhcCce--------------
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVAT-A-N-EANNNEVDISDIPGGPSAFETCAKFCYGMT-------------- 92 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~-~-~-e~~~~~V~L~d~pgGaeaFelv~~FcYg~~-------------- 92 (619)
|+|.. +|+.|.+||.+ |++|+||+.||.. . . |.....|.|++|+ +.+++.|++|||+.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77775 89999999999 9999999999987 3 3 5556789999998 599999999999887
Q ss_pred ------------EeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhhh
Q 007080 93 ------------VTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSIL 134 (619)
Q Consensus 93 ------------i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~ 134 (619)
+.|+..|+..|+.||.||+|.. |++.|+.|+...+.
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~~i~ 127 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMIK 127 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHS
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHc
Confidence 8899999999999999999984 88999999999883
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.18 E-value=2e-11 Score=106.46 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=66.0
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccc---cccCCCeEecCCCCCCHHHHHHHHHhhc-----C---ceEe---e
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATA---NEANNNEVDISDIPGGPSAFETCAKFCY-----G---MTVT---L 95 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~---~e~~~~~V~L~d~pgGaeaFelv~~FcY-----g---~~i~---I 95 (619)
|+|+- +|+.|.+||.+ |++|+||+.||+.. .|+....|.|++++ +.+++.+++||| + +.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 55554 88999999999 99999999999862 45556789999998 599999999999 5 6777 9
Q ss_pred ccccHhHHHHhHhhhCc
Q 007080 96 NAYNVVAARCAAEYLGM 112 (619)
Q Consensus 96 t~~NV~~L~cAAe~LqM 112 (619)
+.+|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.05 E-value=1.7e-10 Score=107.24 Aligned_cols=91 Identities=11% Similarity=0.209 Sum_probs=81.0
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCce-----------------
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMT----------------- 92 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~----------------- 92 (619)
|+|+. +|+.|.+|+.+ |..|+||+.||.... ...|.|++|+ +.+++.|++|||..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 77 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 77 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCC--HHHHHHHHHHHHHHTTCC--------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchh
Confidence 67776 88999999998 899999999998632 3479999998 499999999999765
Q ss_pred ---------EeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 93 ---------VTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 93 ---------i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
+.++..++..|+.||+||+|. .|++.|+.|+...+
T Consensus 78 ~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~i 121 (141)
T 1fs1_B 78 DIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMI 121 (141)
T ss_dssp ---HHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHH
Confidence 678999999999999999999 48999999999987
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.86 E-value=3e-10 Score=107.65 Aligned_cols=92 Identities=14% Similarity=0.272 Sum_probs=50.8
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCce-----------------
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMT----------------- 92 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~----------------- 92 (619)
|+|+. +|+.|.+|+.+ |..|+||+.||.... ....|.|++|+ +.+++.|++|||..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 80 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSC--HHHHHHHHHC----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCc--HHHHHHHHHHHHHcccCCCccccccccccccc
Confidence 66665 89999999998 899999999998642 23479999998 499999999999875
Q ss_pred ----------EeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 93 ----------VTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 93 ----------i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
+.++..++..|+.||.||+|. .|++.|+.|+...+
T Consensus 81 ~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~i 125 (160)
T 2p1m_A 81 DDLKAWDADFMKIDQATLFELILAANYLNIK------NLLDLTCQTVADMI 125 (160)
T ss_dssp --------------------CHHHHHHTTCH------HHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHH
Confidence 578999999999999999999 48999999999988
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.31 E-value=5.5e-07 Score=78.94 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=66.7
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccccccCCCeEecCCCCCCHHHHHHHHHhhcCce--------------Eee
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMT--------------VTL 95 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~--------------i~I 95 (619)
|+|.- +|+.|.+|+.+ |..|++|+.|+...-+.....|.|++++ +.+++.|++|||..+ ..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 67776 99999999996 8999999999986333444689999998 499999999999643 357
Q ss_pred ccccHhHHHHhHhhhCc
Q 007080 96 NAYNVVAARCAAEYLGM 112 (619)
Q Consensus 96 t~~NV~~L~cAAe~LqM 112 (619)
...++..|+.||+||++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999985
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.28 E-value=5.8e-07 Score=78.32 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=64.4
Q ss_pred EEEEE-CCEEEeecCcccccCCHHHHHHhccc---cccCCCeEecCCCCCCHHHHHHHHHhhcCce-----------Eee
Q 007080 31 VIVVV-DDIKFHLHKFPLLSKSACLQKLVATA---NEANNNEVDISDIPGGPSAFETCAKFCYGMT-----------VTL 95 (619)
Q Consensus 31 V~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~---~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~-----------i~I 95 (619)
|+|.- +|+.|.+|+.+ |..|++|+.|+... .|.....|.|++|+ +.+++.|++|||..+ ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 89999999996 89999999999863 34445689999998 499999999999643 368
Q ss_pred ccccHhHHHHhHhhhCc
Q 007080 96 NAYNVVAARCAAEYLGM 112 (619)
Q Consensus 96 t~~NV~~L~cAAe~LqM 112 (619)
....+..|+.||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999985
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.22 E-value=1.1e-06 Score=84.07 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=76.5
Q ss_pred eEEEEE-CCEEEeecCcccccCCHHHHHHhccccc-----cCCCeEecCCCCCCHHHHHHHHHhhcCce-----------
Q 007080 30 DVIVVV-DDIKFHLHKFPLLSKSACLQKLVATANE-----ANNNEVDISDIPGGPSAFETCAKFCYGMT----------- 92 (619)
Q Consensus 30 DV~I~V-gg~~F~lHK~vLas~S~yFr~Lf~~~~e-----~~~~~V~L~d~pgGaeaFelv~~FcYg~~----------- 92 (619)
-|+|+- +|+.|.+++.+ |..|++++.|+..... .....|.|++|+ +.+++.|++|||-.+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 466665 88999999997 8889999999986321 223679999998 499999999998532
Q ss_pred --------------EeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 93 --------------VTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 93 --------------i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
+.+....+..|+.||.||+|. .|++.|+.++...+
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk------~Lldl~c~~vA~~i 133 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIK------PLLDAGCKVVAEMI 133 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHH
Confidence 357778899999999999999 48899999998866
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.63 E-value=3.1e-05 Score=69.37 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=63.3
Q ss_pred EEEE-ECCEEEeecCcccccCCHHHHHHhccc---cccCCCeEecCCCCCCHHHHHHHHHhhcCce-----------Eee
Q 007080 31 VIVV-VDDIKFHLHKFPLLSKSACLQKLVATA---NEANNNEVDISDIPGGPSAFETCAKFCYGMT-----------VTL 95 (619)
Q Consensus 31 V~I~-Vgg~~F~lHK~vLas~S~yFr~Lf~~~---~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~-----------i~I 95 (619)
|+|+ .+|+.|.+++. .|..|+.++.|+... .|.....|.|++|+ +.+++.|++|||-.+ ..+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 6666 38999999999 578999999999853 23334589999998 499999999998532 368
Q ss_pred ccccHhHHHHhHhhhCc
Q 007080 96 NAYNVVAARCAAEYLGM 112 (619)
Q Consensus 96 t~~NV~~L~cAAe~LqM 112 (619)
...++..|+.||+||++
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999986
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.38 E-value=0.00036 Score=61.60 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=70.3
Q ss_pred eEEEEECCEEEeecCcccccCC-HHHHHHhcccc-----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhH
Q 007080 30 DVIVVVDDIKFHLHKFPLLSKS-ACLQKLVATAN-----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVA 102 (619)
Q Consensus 30 DV~I~Vgg~~F~lHK~vLas~S-~yFr~Lf~~~~-----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~ 102 (619)
=|+|.|||+.|...+..|.... .+|.+||.... .....++-| |- .|+.|+.|++|..+|++.+.. -.+..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DR--dp~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CS--CHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cC--ChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 3788999999999999999885 57899987531 112345655 33 479999999999999988743 34578
Q ss_pred HHHhHhhhCccccccccchHHHHHHHHH
Q 007080 103 ARCAAEYLGMHESVEKGNFVYKIDVFIS 130 (619)
Q Consensus 103 L~cAAe~LqM~e~~~~gNL~~~ce~FL~ 130 (619)
++..|+|+++++ |++.|++-+.
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~ 105 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIR 105 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHh
Confidence 999999999996 6777766543
No 30
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.00027 Score=61.89 Aligned_cols=89 Identities=11% Similarity=0.053 Sum_probs=63.1
Q ss_pred HHhchhchhhhhhhhCchhHHHHHHHHHhccccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChh
Q 007080 143 VLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEID 222 (619)
Q Consensus 143 ~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~id 222 (619)
...||.+++.+|+.+++ ..|..+|. .|. ..+| .+....++|..|+.+
T Consensus 9 ~~~NCl~i~~~A~~~~~-----~~L~~~a~--------~fi-------------------~~nF-~~v~~~~eFl~L~~~ 55 (105)
T 2eqx_A 9 QVGNCLQVMWLADRHSD-----PELYTAAK--------HCA-------------------KTHL-AQLQNTEEFLHLPHR 55 (105)
T ss_dssp CTTTHHHHHHHHHHTTC-----HHHHHHHH--------HHH-------------------HHTC-HHHHTSHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHHH--------HHH-------------------HHHH-HHHHhcccHhhCCHH
Confidence 46799999999999998 67777664 232 1222 223456899999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCCccccccCCchhhhhhHHHHH
Q 007080 223 FYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAV 277 (619)
Q Consensus 223 l~~rVI~am~s~g~~~~e~I~~aL~~Ya~~~L~~~~~~~~~~~~~~~~r~LLEtI 277 (619)
....+ +.++ +.+++.|++|++.|+++....+. .....|++.|
T Consensus 56 ~L~~l---L~sd-v~~E~~vf~av~~Wv~~d~~~R~---------~~~~~Ll~~V 97 (105)
T 2eqx_A 56 LLTDI---ISDG-VPCSQNPTEAIEAWINFNKEERE---------AFAESLRTSL 97 (105)
T ss_dssp HHHHH---HHTC-EETTSCHHHHHHHHHHTTHHHHH---------HHHHHHHHHC
T ss_pred HHHHH---HcCC-CCCHHHHHHHHHHHHHcCHHHHH---------HHHHHHHHHH
Confidence 85444 4444 66788999999999998876443 3455666665
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.68 E-value=0.024 Score=55.76 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=70.9
Q ss_pred eEEEEECCEEEeecCcccccCC-HHHHHHhcccc-----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhH
Q 007080 30 DVIVVVDDIKFHLHKFPLLSKS-ACLQKLVATAN-----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVA 102 (619)
Q Consensus 30 DV~I~Vgg~~F~lHK~vLas~S-~yFr~Lf~~~~-----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~ 102 (619)
=|+|.|||+.|...+..|...- .+|.+||.... .....++-|. - .|..|+.|++|.-+|++.+.. -.+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID-R--DP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID-R--DPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC-S--CSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec-C--ChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 3678999999999999999874 48899987531 1123456553 2 358999999999999998743 34467
Q ss_pred HHHhHhhhCccccccccchHHHHHHHHHHh
Q 007080 103 ARCAAEYLGMHESVEKGNFVYKIDVFISSS 132 (619)
Q Consensus 103 L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~ 132 (619)
++.-|+|+++.+ |+..|..-+.+.
T Consensus 90 l~eEA~FygL~~------Lv~~l~~~i~er 113 (202)
T 3drx_A 90 VLEEAEFYNITS------LIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHCCcHH------HHHHHHHHHHHH
Confidence 999999999985 777777777644
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.90 E-value=0.0091 Score=53.57 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=62.5
Q ss_pred EEEEECCEEEeecCcccccCC-HHHHHHhccc--cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhHHHHh
Q 007080 31 VIVVVDDIKFHLHKFPLLSKS-ACLQKLVATA--NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVAARCA 106 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S-~yFr~Lf~~~--~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~L~cA 106 (619)
|+|.|||+.|...+..|...- .+|.+||... ......++-|.- .|..|+.|++|.-+|++.+.. -.+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDR---dp~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDR---HPGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECS---CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEec---ChHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 789999999999999998763 3456676642 122345666642 348999999999999998754 357889999
Q ss_pred HhhhCcccc
Q 007080 107 AEYLGMHES 115 (619)
Q Consensus 107 Ae~LqM~e~ 115 (619)
|+|+++++.
T Consensus 84 a~fy~i~~~ 92 (115)
T 3kvt_A 84 LEFWGLDSN 92 (115)
T ss_dssp HHHHTCCGG
T ss_pred HHHhCCChH
Confidence 999999975
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=92.95 E-value=0.091 Score=45.92 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=58.7
Q ss_pred EEEEECCEEEeecCcccccCC-HHHHHHhccc--cccCCCeEecCCCCCCHHHHHHHHHhhcC-ceEeecc-ccHhHHHH
Q 007080 31 VIVVVDDIKFHLHKFPLLSKS-ACLQKLVATA--NEANNNEVDISDIPGGPSAFETCAKFCYG-MTVTLNA-YNVVAARC 105 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S-~yFr~Lf~~~--~e~~~~~V~L~d~pgGaeaFelv~~FcYg-~~i~It~-~NV~~L~c 105 (619)
|+|.|||+.|...+..|...- ..|-+|+... -.....++-|.- .|..|+.|++|.-+ |++.+.. -.+..++.
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDR---dp~~F~~ILnflR~~G~l~~p~~~~~~~~~~ 79 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDR---NRPSFDAILYFYQSGGRLRRPVNVPLDVFSE 79 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECS---CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcC---ChHHHHHHHHHHhcCCcccCCCCCCHHHHHH
Confidence 789999999999999886552 2344455421 122345666632 24899999999998 8987633 35678999
Q ss_pred hHhhhCcccc
Q 007080 106 AAEYLGMHES 115 (619)
Q Consensus 106 AAe~LqM~e~ 115 (619)
-|+|.++.+.
T Consensus 80 Ea~fy~i~~~ 89 (100)
T 1t1d_A 80 EIKFYELGEN 89 (100)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHcCCCHH
Confidence 9999999973
No 34
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=91.60 E-value=0.1 Score=47.28 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=57.5
Q ss_pred eEEEEECCEEEeecCcccccCCHHHHHHhccc-c----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhHH
Q 007080 30 DVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVAA 103 (619)
Q Consensus 30 DV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~L 103 (619)
=|+|.|||+.|..-+..|...-+- |+... + .....++-|. -.|..|+.|++|.-+|++.+.. -.+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 378899999999998888654321 22221 1 1123455553 3479999999999999988644 357889
Q ss_pred HHhHhhhCcccc
Q 007080 104 RCAAEYLGMHES 115 (619)
Q Consensus 104 ~cAAe~LqM~e~ 115 (619)
+.-|+|+++.+.
T Consensus 88 ~~Ea~fy~i~~l 99 (124)
T 1s1g_A 88 DDELAFYGILPE 99 (124)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999975
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=91.59 E-value=0.076 Score=46.66 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=56.8
Q ss_pred EEEEECCEEEeecCcccccCCHHHHHHhccc-c----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhHHH
Q 007080 31 VIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVAAR 104 (619)
Q Consensus 31 V~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~L~ 104 (619)
|+|.|||+.|...+..|...-+- |+... + .....++-|.- .|+.|+.|++|.-+|++.+.. ..+..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s---~L~~~~~~~~~~~~~~~~FiDR---dp~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDT---LLGSSERDFFYHPETQQYFFDR---DPDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSS---STTSGGGGGGEEGGGTEEEECS---CTTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCc---cccccCCcccccCCCCcEEEeC---CcHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 78999999999998887654321 22221 1 11234566532 358999999999999987643 3578899
Q ss_pred HhHhhhCcccc
Q 007080 105 CAAEYLGMHES 115 (619)
Q Consensus 105 cAAe~LqM~e~ 115 (619)
.-|+|+++++.
T Consensus 76 ~Ea~fy~i~~l 86 (105)
T 1nn7_A 76 EELAFFGLIPE 86 (105)
T ss_dssp HHHHHHTCCSC
T ss_pred HHHHHcCCCHH
Confidence 99999999974
No 36
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=90.43 E-value=0.14 Score=47.33 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=58.6
Q ss_pred eeEEEEECCEEEeecCcccccCCHHHHHHhccc-c----ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc-ccHhH
Q 007080 29 TDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N----EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA-YNVVA 102 (619)
Q Consensus 29 cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~----e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~-~NV~~ 102 (619)
.=|+|.|||+.|...+..|...-+- |+... + .....++-|. -.+..|+.|++|.-+|++.+.. ..+..
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 3478899999999998888654321 23221 1 1233456653 3469999999999999988743 35788
Q ss_pred HHHhHhhhCcccc
Q 007080 103 ARCAAEYLGMHES 115 (619)
Q Consensus 103 L~cAAe~LqM~e~ 115 (619)
++.-|+|+++++.
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999975
No 37
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=69.99 E-value=1.3 Score=29.60 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.1
Q ss_pred ccHhHHHHhHhhhCcc
Q 007080 98 YNVVAARCAAEYLGMH 113 (619)
Q Consensus 98 ~NV~~L~cAAe~LqM~ 113 (619)
.||+.|+.||+||+=-
T Consensus 3 ~nvq~LLeAAeyLErr 18 (26)
T 1pd7_B 3 MNIQMLLEAADYLERR 18 (26)
T ss_dssp CSTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5999999999999844
No 38
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=49.74 E-value=11 Score=33.36 Aligned_cols=32 Identities=6% Similarity=0.119 Sum_probs=24.3
Q ss_pred hcCCCCCChhhHHHHHHhhcCCCCCCcchHHHHHHHHHHhccc
Q 007080 398 IAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQA 440 (619)
Q Consensus 398 iA~D~nL~~skF~~Lae~lP~~aR~~hDgLYRAIDiYLK~Hp~ 440 (619)
...|.+.++.++.+.+ .++++|||-||-+||.
T Consensus 91 ~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 91 KVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp ESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred ECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 4556778888887665 6789999999999984
No 39
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=47.75 E-value=9.9 Score=41.82 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=56.9
Q ss_pred eEEEEECCEEEeecCcccccCCH-HHHHHhccc--cccCCCeEecCCCCCCHHHHHHHHHhhcC-ceEeecc-ccHhHHH
Q 007080 30 DVIVVVDDIKFHLHKFPLLSKSA-CLQKLVATA--NEANNNEVDISDIPGGPSAFETCAKFCYG-MTVTLNA-YNVVAAR 104 (619)
Q Consensus 30 DV~I~Vgg~~F~lHK~vLas~S~-yFr~Lf~~~--~e~~~~~V~L~d~pgGaeaFelv~~FcYg-~~i~It~-~NV~~L~ 104 (619)
=|+|.|||+.|...+..|...-+ .+-+|+... -+....++-+. -.|+.|+.+++|..+ |++.+.. -.+..+.
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~D---R~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEEC---SCHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEc---CChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 46789999999999888764421 112222211 12234566663 347999999999998 9987643 3456788
Q ss_pred HhHhhhCcccc
Q 007080 105 CAAEYLGMHES 115 (619)
Q Consensus 105 cAAe~LqM~e~ 115 (619)
.-|+|.++.+.
T Consensus 130 ~E~~f~~i~~~ 140 (514)
T 2r9r_B 130 EEIRFYELGEE 140 (514)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHhcCCCHH
Confidence 99999999974
No 40
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.14 E-value=42 Score=28.53 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=30.9
Q ss_pred EeeccccHhHHHHhHhhhCccccccccchHHHHHHHHHHhh
Q 007080 93 VTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSI 133 (619)
Q Consensus 93 i~It~~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l 133 (619)
=.|+++|...++..|+.++.++ |.++|..|+....
T Consensus 6 ~~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~nF 40 (105)
T 2eqx_A 6 SGVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHH
Confidence 3589999999999999999985 8889999998776
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=27.36 E-value=55 Score=27.43 Aligned_cols=43 Identities=12% Similarity=0.311 Sum_probs=32.8
Q ss_pred CccccHHHHHHHHHHHHhccCCCCCCCCcchhhHhhcCCCCCCchHHHHHHHHHHhhhhhh
Q 007080 338 STMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEI 398 (619)
Q Consensus 338 ~t~YDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEi 398 (619)
+..++.+++.||+..+...... ..+...+..+++++|-|..|.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~kt------------------rI~~dAl~l~aeyl~iFV~EA 48 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRT------------------RVNGDALLLMAELLKVFVREA 48 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTC------------------EECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcc------------------cccHHHHHHHHHHHHHHHHHH
Confidence 4568999999999987654321 124578999999999999884
No 42
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.80 E-value=2.1e+02 Score=22.98 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCCCCChhhHHHHHHhhcCCCCCCcchHHHHHHHHHHhccc-CCHHHHhhhccccc--cCCCCHHHh
Q 007080 400 KDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQA-ISKSERKKICKLMD--CRKLSVDAC 463 (619)
Q Consensus 400 ~D~nL~~skF~~Lae~lP~~aR~~hDgLYRAIDiYLK~Hp~-ls~~Er~~lCr~md--c~KLS~EAc 463 (619)
.|..+....|+.+...- ....+.+.+|.+.|=+.+.+ |+..|-+++++.+. ..+++.+.+
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 68899999999987642 34566788888887666654 89999998888774 556776553
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=20.66 E-value=62 Score=27.40 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=32.5
Q ss_pred CccccHHHHHHHHHHHHhccCCCCCCCCcchhhHhhcCCCCCCchHHHHHHHHHHhhhhhh
Q 007080 338 STMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEI 398 (619)
Q Consensus 338 ~t~YDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEi 398 (619)
+..+..++|.||+..+..... ...+...+..|++++|-|..|.
T Consensus 10 ~~~i~~~li~ril~~~F~~~k------------------TkIs~dAl~l~aeyl~iFV~EA 52 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDK------------------TKVSGDALQLMVELLKVFVVEA 52 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTT------------------CEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCC------------------ccccHHHHHHHHHHHHHHHHHH
Confidence 556889999999997665432 1235578999999999999884
Done!