Query 007082
Match_columns 619
No_of_seqs 489 out of 5094
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.3E-47 1.2E-51 434.8 19.6 415 65-497 140-585 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.8E-45 2.1E-49 416.1 23.3 434 56-497 109-561 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.2E-43 4.8E-48 343.7 3.8 423 66-527 53-483 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-39 5.4E-44 315.5 1.7 365 64-468 77-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.4E-33 3.1E-38 263.8 -9.5 404 66-496 69-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 1.7E-31 3.8E-36 274.6 -2.1 437 29-495 5-488 (1081)
7 KOG0444 Cytoskeletal regulator 100.0 9.6E-31 2.1E-35 257.5 -3.3 358 89-470 6-373 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 2.5E-30 5.5E-35 254.6 -2.4 356 66-446 8-373 (1255)
9 KOG0472 Leucine-rich repeat pr 100.0 1.8E-31 3.9E-36 249.8 -10.5 417 25-472 71-541 (565)
10 KOG0618 Serine/threonine phosp 99.9 5.7E-28 1.2E-32 248.9 -3.4 431 24-493 47-510 (1081)
11 KOG4237 Extracellular matrix p 99.9 1.6E-26 3.6E-31 216.4 -6.4 428 25-493 49-498 (498)
12 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.8E-29 203.8 -0.0 107 406-512 269-375 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.4E-25 216.3 19.9 153 84-241 552-714 (1153)
14 PLN03210 Resistant to P. syrin 99.8 7.7E-20 1.7E-24 210.6 21.5 335 132-496 550-906 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 1.6E-20 3.4E-25 200.5 14.3 262 165-478 202-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.4E-25 199.7 12.7 266 140-457 201-467 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-18 5.3E-23 172.5 18.1 282 94-422 2-318 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 9.7E-18 2.1E-22 168.2 20.4 278 69-363 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 4.2E-18 9.1E-23 183.4 11.0 245 189-496 179-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 178.9 12.4 246 164-449 178-429 (754)
21 KOG0617 Ras suppressor protein 99.5 2.8E-16 6.1E-21 131.2 -8.3 184 296-499 28-215 (264)
22 KOG2120 SCF ubiquitin ligase, 99.4 8.4E-14 1.8E-18 126.8 4.8 209 14-223 121-349 (419)
23 PLN03150 hypothetical protein; 99.4 1.2E-13 2.5E-18 148.8 6.8 110 376-497 419-529 (623)
24 KOG1909 Ran GTPase-activating 99.4 5.1E-13 1.1E-17 124.8 9.4 198 277-495 90-310 (382)
25 KOG4341 F-box protein containi 99.4 2.2E-13 4.8E-18 130.0 6.6 322 86-526 133-469 (483)
26 KOG3207 Beta-tubulin folding c 99.4 5.1E-14 1.1E-18 135.0 1.4 212 252-474 119-341 (505)
27 KOG1909 Ran GTPase-activating 99.4 5.4E-13 1.2E-17 124.7 5.3 168 326-501 92-288 (382)
28 KOG0617 Ras suppressor protein 99.3 6.3E-15 1.4E-19 123.2 -7.7 157 279-453 33-191 (264)
29 KOG4341 F-box protein containi 99.3 1.1E-12 2.4E-17 125.4 5.7 149 17-175 98-253 (483)
30 KOG3207 Beta-tubulin folding c 99.3 2.8E-12 6E-17 123.3 3.6 212 276-499 118-342 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 7E-11 1.5E-15 104.0 4.6 124 255-381 20-146 (175)
32 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 113.2 -0.8 227 82-316 174-414 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 103.0 4.4 97 212-308 42-147 (175)
34 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.3E-15 106.0 2.2 131 301-451 284-415 (490)
35 KOG2120 SCF ubiquitin ligase, 99.0 1.8E-10 4E-15 105.4 1.8 194 281-514 187-392 (419)
36 KOG0532 Leucine-rich repeat (L 99.0 3.9E-11 8.5E-16 119.1 -2.7 193 254-470 75-271 (722)
37 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 111.8 8.3 178 279-477 116-295 (394)
38 PLN03150 hypothetical protein; 98.9 2E-09 4.3E-14 116.3 8.3 108 352-471 419-527 (623)
39 COG4886 Leucine-rich repeat (L 98.9 4.1E-09 9E-14 108.8 8.9 157 280-456 141-298 (394)
40 KOG0532 Leucine-rich repeat (L 98.9 7E-11 1.5E-15 117.4 -5.2 195 277-493 73-270 (722)
41 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.3E-14 78.4 2.9 59 412-470 2-60 (61)
42 KOG0531 Protein phosphatase 1, 98.8 2.9E-10 6.2E-15 117.4 -2.0 110 227-340 91-200 (414)
43 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.9E-14 77.5 3.1 61 435-495 1-61 (61)
44 KOG4658 Apoptotic ATPase [Sign 98.8 3.6E-09 7.9E-14 116.7 3.9 178 88-267 543-730 (889)
45 KOG0531 Protein phosphatase 1, 98.7 9.3E-10 2E-14 113.7 -2.5 242 231-497 72-319 (414)
46 COG5238 RNA1 Ran GTPase-activa 98.7 5.1E-08 1.1E-12 88.5 8.1 203 135-345 25-261 (388)
47 KOG2982 Uncharacterized conser 98.7 1.1E-08 2.4E-13 93.9 3.3 78 166-243 47-133 (418)
48 KOG4658 Apoptotic ATPase [Sign 98.7 9.1E-09 2E-13 113.6 2.4 288 139-445 544-856 (889)
49 KOG1859 Leucine-rich repeat pr 98.7 1E-09 2.2E-14 112.2 -4.7 135 352-504 165-300 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-07 2.5E-12 86.3 8.2 238 108-365 23-317 (388)
51 KOG2982 Uncharacterized conser 98.5 8.6E-08 1.9E-12 88.2 3.6 61 279-340 199-263 (418)
52 KOG3665 ZYG-1-like serine/thre 98.5 4.9E-07 1.1E-11 97.5 9.8 228 7-244 3-263 (699)
53 KOG1859 Leucine-rich repeat pr 98.4 1E-08 2.2E-13 105.0 -4.1 123 141-267 165-292 (1096)
54 KOG3665 ZYG-1-like serine/thre 98.4 6.3E-07 1.4E-11 96.7 7.9 139 65-206 122-268 (699)
55 KOG1947 Leucine rich repeat pr 98.2 1.9E-06 4E-11 91.9 7.1 115 85-199 183-306 (482)
56 KOG1644 U2-associated snRNP A' 98.1 5.7E-06 1.2E-10 72.3 5.5 103 213-315 43-154 (233)
57 KOG4579 Leucine-rich repeat (L 98.1 3E-07 6.4E-12 74.8 -2.2 88 373-474 51-138 (177)
58 KOG4579 Leucine-rich repeat (L 98.1 4.4E-07 9.5E-12 73.8 -1.4 88 352-453 54-141 (177)
59 KOG1644 U2-associated snRNP A' 98.0 4.5E-06 9.7E-11 72.9 3.6 107 278-386 41-151 (233)
60 KOG1947 Leucine rich repeat pr 98.0 9.2E-06 2E-10 86.6 5.8 89 296-384 238-330 (482)
61 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 52.1 4.4 38 435-473 1-38 (44)
62 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 51.8 3.5 37 412-449 2-38 (44)
63 PRK15386 type III secretion pr 97.5 0.00029 6.4E-09 70.3 8.3 138 277-446 50-188 (426)
64 PRK15386 type III secretion pr 97.5 0.00035 7.5E-09 69.8 8.7 13 113-125 50-62 (426)
65 PF13306 LRR_5: Leucine rich r 97.5 7.3E-05 1.6E-09 63.5 3.4 121 86-214 8-128 (129)
66 KOG3864 Uncharacterized conser 97.5 6.2E-05 1.4E-09 66.0 2.6 84 66-150 102-186 (221)
67 PF13306 LRR_5: Leucine rich r 97.5 0.00013 2.8E-09 62.0 4.5 119 348-484 9-127 (129)
68 KOG4308 LRR-containing protein 97.4 1.7E-05 3.8E-10 82.0 -2.1 41 301-341 262-305 (478)
69 KOG2739 Leucine-rich acidic nu 97.3 7.2E-05 1.6E-09 68.5 0.5 102 350-465 42-149 (260)
70 KOG2739 Leucine-rich acidic nu 97.2 0.0001 2.2E-09 67.5 0.8 60 279-339 43-104 (260)
71 KOG2123 Uncharacterized conser 97.1 8.8E-05 1.9E-09 68.2 -0.6 82 255-340 20-102 (388)
72 KOG2123 Uncharacterized conser 97.1 7.3E-05 1.6E-09 68.7 -1.2 101 278-381 18-123 (388)
73 KOG4308 LRR-containing protein 97.1 6E-05 1.3E-09 78.1 -2.4 108 92-201 89-217 (478)
74 KOG3864 Uncharacterized conser 96.5 0.0018 3.9E-08 57.1 2.6 82 91-173 102-185 (221)
75 TIGR00864 PCC polycystin catio 96.2 0.003 6.4E-08 76.1 3.0 62 465-526 1-64 (2740)
76 smart00367 LRR_CC Leucine-rich 93.8 0.078 1.7E-06 30.2 2.7 22 90-111 2-23 (26)
77 PF00560 LRR_1: Leucine Rich R 93.7 0.042 9E-07 29.8 1.4 12 461-472 2-13 (22)
78 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6.1E-07 30.5 0.7 6 416-421 5-10 (22)
79 smart00367 LRR_CC Leucine-rich 93.6 0.077 1.7E-06 30.2 2.5 24 114-137 1-24 (26)
80 PF13504 LRR_7: Leucine rich r 91.6 0.12 2.5E-06 26.0 1.3 12 233-244 3-14 (17)
81 smart00369 LRR_TYP Leucine-ric 90.1 0.29 6.3E-06 27.7 2.2 19 436-454 3-21 (26)
82 smart00370 LRR Leucine-rich re 90.1 0.29 6.3E-06 27.7 2.2 19 436-454 3-21 (26)
83 PF13516 LRR_6: Leucine Rich r 89.8 0.26 5.5E-06 27.3 1.7 21 301-321 2-22 (24)
84 smart00369 LRR_TYP Leucine-ric 88.7 0.31 6.8E-06 27.6 1.6 21 231-251 2-22 (26)
85 smart00370 LRR Leucine-rich re 88.7 0.31 6.8E-06 27.6 1.6 21 231-251 2-22 (26)
86 PTZ00382 Variant-specific surf 88.4 0.15 3.2E-06 40.0 0.2 30 553-582 64-93 (96)
87 PF13516 LRR_6: Leucine Rich r 88.2 0.32 7E-06 26.9 1.4 17 351-367 2-18 (24)
88 PF04478 Mid2: Mid2 like cell 87.6 0.17 3.6E-06 42.6 0.0 20 555-574 49-68 (154)
89 KOG0473 Leucine-rich repeat pr 84.8 0.017 3.6E-07 52.2 -7.6 64 407-472 61-124 (326)
90 PF02480 Herpes_gE: Alphaherpe 82.4 0.41 8.9E-06 49.3 0.0 49 557-606 354-403 (439)
91 PF01102 Glycophorin_A: Glycop 80.9 0.13 2.8E-06 42.0 -3.3 29 557-586 66-94 (122)
92 smart00368 LRR_RI Leucine rich 80.4 2.8 6E-05 24.2 3.1 22 301-322 2-23 (28)
93 smart00082 LRRCT Leucine rich 80.0 0.53 1.1E-05 31.9 -0.1 18 493-510 1-18 (51)
94 PF01034 Syndecan: Syndecan do 78.4 0.68 1.5E-05 32.5 0.0 10 557-566 11-20 (64)
95 KOG3763 mRNA export factor TAP 75.1 3.4 7.3E-05 42.9 3.9 62 326-389 218-284 (585)
96 PHA03265 envelope glycoprotein 74.0 1.2 2.5E-05 42.9 0.4 35 555-589 347-381 (402)
97 PF01034 Syndecan: Syndecan do 72.9 1.2 2.6E-05 31.3 0.1 20 554-573 12-31 (64)
98 smart00365 LRR_SD22 Leucine-ri 72.5 3.9 8.4E-05 23.2 2.1 15 213-227 3-17 (26)
99 KOG4242 Predicted myosin-I-bin 70.9 33 0.00071 35.3 9.4 108 114-224 164-280 (553)
100 PF02439 Adeno_E3_CR2: Adenovi 70.5 0.3 6.5E-06 30.1 -2.8 11 576-586 25-35 (38)
101 KOG3763 mRNA export factor TAP 70.2 4.6 0.0001 41.9 3.6 80 113-194 216-307 (585)
102 KOG0473 Leucine-rich repeat pr 69.2 0.17 3.6E-06 46.0 -6.0 88 349-451 40-127 (326)
103 KOG4242 Predicted myosin-I-bin 67.1 17 0.00038 37.1 6.7 172 297-472 296-481 (553)
104 smart00364 LRR_BAC Leucine-ric 66.2 3.7 8.1E-05 23.2 1.1 17 232-248 3-19 (26)
105 PF12273 RCR: Chitin synthesis 65.4 0.79 1.7E-05 38.6 -2.5 9 578-586 20-28 (130)
106 PF05808 Podoplanin: Podoplani 59.6 3 6.5E-05 35.6 0.0 29 555-584 129-157 (162)
107 PF14575 EphA2_TM: Ephrin type 58.8 0.96 2.1E-05 33.6 -2.7 12 576-587 20-31 (75)
108 PF03302 VSP: Giardia variant- 58.8 2.8 6.1E-05 42.9 -0.4 32 551-582 363-394 (397)
109 PF15176 LRR19-TM: Leucine-ric 56.3 1 2.3E-05 34.7 -2.9 36 557-594 20-55 (102)
110 PF08374 Protocadherin: Protoc 55.1 2.7 5.9E-05 37.7 -1.0 18 557-574 40-57 (221)
111 PF01299 Lamp: Lysosome-associ 49.6 3 6.6E-05 41.1 -1.8 33 557-590 272-304 (306)
112 TIGR01478 STEVOR variant surfa 45.0 2.3 5.1E-05 39.9 -3.1 13 576-588 279-291 (295)
113 PF14991 MLANA: Protein melan- 42.6 8.6 0.00019 30.6 0.1 26 557-583 26-51 (118)
114 KOG1665 AFH1-interacting prote 41.9 23 0.00051 32.1 2.7 40 301-340 171-210 (302)
115 PF12191 stn_TNFRSF12A: Tumour 41.0 9.3 0.0002 31.1 0.1 14 578-591 99-112 (129)
116 PF07204 Orthoreo_P10: Orthore 37.9 13 0.00028 28.4 0.4 9 576-584 60-68 (98)
117 PF06365 CD34_antigen: CD34/Po 35.9 7.2 0.00016 35.2 -1.4 13 576-588 121-133 (202)
118 PF15102 TMEM154: TMEM154 prot 30.8 7.7 0.00017 32.7 -1.9 6 560-565 58-63 (146)
119 TIGR00864 PCC polycystin catio 30.8 35 0.00076 43.3 2.6 33 417-449 1-33 (2740)
120 PF13908 Shisa: Wnt and FGF in 30.0 12 0.00027 33.4 -0.9 18 556-573 80-97 (179)
121 PF12273 RCR: Chitin synthesis 29.7 7.6 0.00016 32.6 -2.2 12 578-589 17-28 (130)
122 PF07213 DAP10: DAP10 membrane 28.1 7 0.00015 28.9 -2.3 28 557-585 36-63 (79)
123 PF05393 Hum_adeno_E3A: Human 28.1 5.9 0.00013 29.7 -2.7 21 564-584 39-59 (94)
124 PF02158 Neuregulin: Neureguli 27.6 20 0.00044 35.4 0.0 17 557-573 12-28 (404)
125 PF14316 DUF4381: Domain of un 27.4 8.3 0.00018 33.2 -2.4 23 578-600 39-61 (146)
126 PF02009 Rifin_STEVOR: Rifin/s 26.2 7.8 0.00017 37.6 -3.0 6 580-585 278-283 (299)
127 PF00558 Vpu: Vpu protein; In 25.8 6.1 0.00013 29.6 -2.9 6 578-583 25-30 (81)
128 PF10873 DUF2668: Protein of u 25.3 13 0.00027 31.0 -1.5 18 556-573 62-79 (155)
129 PF04689 S1FA: DNA binding pro 24.4 14 0.00031 25.8 -1.1 19 555-573 13-31 (69)
130 KOG1665 AFH1-interacting prote 23.1 1.3E+02 0.0029 27.5 4.2 10 351-360 171-180 (302)
131 PF06697 DUF1191: Protein of u 21.4 15 0.00032 35.0 -2.1 13 557-569 216-228 (278)
132 PF05568 ASFV_J13L: African sw 20.0 19 0.00042 29.8 -1.5 10 576-585 49-58 (189)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-47 Score=434.81 Aligned_cols=415 Identities=22% Similarity=0.248 Sum_probs=245.3
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcE
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 144 (619)
++|++|+|++|. +.+..+..++.+++|++|+|++|. +....+..+.++++|++|++++| .+....+..++++++|++
T Consensus 140 ~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccE
Confidence 356666666665 444555556666666666666665 44444455666666666666666 444444555666666666
Q ss_pred EEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC
Q 007082 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 145 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 224 (619)
|++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 66666666655555566666666666666666665666666666666666666666655666666666666666666655
Q ss_pred CC-----CCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hh
Q 007082 225 TK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CF 296 (619)
Q Consensus 225 ~~-----l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~ 296 (619)
.. +.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+. ..
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChh
Confidence 42 224556666666666555 3344444566666666666655533222 223455566666666655432 33
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|++++..+..+ ..+++|+.|++++|.+++..+..+..+++
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhH-hcCCCCCEEECcCCcccCccChhhccCCC
Confidence 4444555555555555554444444443 455555555555544433333 33455555555555554444444444444
Q ss_pred -----------------------CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082 377 -----------------------LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 433 (619)
Q Consensus 377 -----------------------L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 433 (619)
|+.|++++|++++..|. .+..+++|+.|++++|.+.+.+|..+..
T Consensus 454 L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR------------KLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred CcEEECcCceeeeecCcccccccceEEECcCCccCCccCh------------hhhhhhccCEEECcCCcceeeCChHHcC
Confidence 55555555555544444 5666677777777777777777777777
Q ss_pred CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++..|..+..+++|+.+++++|++.+
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 7777777777777777777777777777777777777777777666667777777777777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.8e-45 Score=416.10 Aligned_cols=434 Identities=22% Similarity=0.224 Sum_probs=369.1
Q ss_pred ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhh
Q 007082 56 FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135 (619)
Q Consensus 56 ~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~ 135 (619)
+|..+....++|++|+|++|. +.+..+. +.+++|++|+|++|. +....+..++++++|++|++++| .+....+..
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~ 183 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNN-FTGSIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNS 183 (968)
T ss_pred CChHHhccCCCCCEEECcCCc-cccccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccC-cccccCChh
Confidence 343333246799999999998 5444443 468999999999987 66666777999999999999999 666667788
Q ss_pred hcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCC
Q 007082 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (619)
Q Consensus 136 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 215 (619)
++++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCC-----CCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCC
Q 007082 216 FLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289 (619)
Q Consensus 216 ~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 289 (619)
.|++++|.+.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSN 342 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCC
Confidence 99999998863 336899999999999988 5677777999999999999999865543 3557899999999999
Q ss_pred Ccchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH
Q 007082 290 SLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (619)
Q Consensus 290 ~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 367 (619)
.+.+. ..+..+++|+.|++++|.+++..+..+... ++|+.|++++|.+.+..+..+ +.+++|+.|++++|.+++..
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHH-hCCCCCCEEECcCCEeeeEC
Confidence 99764 567889999999999999988878777766 899999999999998877776 67999999999999999988
Q ss_pred HHHhhCCCCCcEEEccCCccCcchhccccchh-----------hhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 368 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETD-----------LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 368 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
|..+..+++|+.|++++|++++.++....... ....++.....++|+.|++++|++++..|..+..+++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 88899999999999999999887665111000 0001112233467788888888888888888888999
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
|+.|+|++|.+++.+|..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++..
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 9999999999999889999999999999999999999999999999999999999999854
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-43 Score=343.68 Aligned_cols=423 Identities=17% Similarity=0.242 Sum_probs=303.8
Q ss_pred CccEEeccCCCCCChHHHHHHhcC-CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhc-CCCCCc
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAF-RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLE 143 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~ 143 (619)
....||.++......++...-+-+ +.-+.|++++|+ +....+..|.++++|+++++.+| .++. +..++ ...+|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~ 128 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLE 128 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhh--ccccccccccee
Confidence 466777777662222222211222 356678888877 77777777888888888888888 4443 33444 345688
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 223 (619)
.|+|.+|.|+....+.++.++.|++|||+.|.++.+....|..-.++++|+|++|.|+......|.++.+|..|.|+.|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 88888888888777888888888888888888887766677777788888888888887777777776666666666665
Q ss_pred CCCCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcC
Q 007082 224 VTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQM 300 (619)
Q Consensus 224 l~~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~ 300 (619)
++.+| ...| .+++|+.|++..|.+.-. ....|.++++|+.|.+..|.+..+ ..|..+
T Consensus 209 ittLp-------------------~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 209 ITTLP-------------------QRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ccccC-------------------HHHhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 55444 3333 244444444444443322 223455666666666666666555 456667
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 380 (619)
.++++|++..|++....-..+.++ ..|+.|++++|.|....+..+ .-+++|++|+|+.|+++...+..|..+..|++|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 777777777777766555555555 777777777777776666655 457777888888777777777777777778888
Q ss_pred EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC---cccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT---LFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
+|+.|.++..-.. +|.++++|++|||++|.++..+ ...|.++++|+.|+|.+|++..+.-..|++
T Consensus 347 nLs~Nsi~~l~e~------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 347 NLSHNSIDHLAEG------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred cccccchHHHHhh------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 8888877665555 6777788888888888776443 344677889999999999999888889999
Q ss_pred CCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeeecccccccCCCCCC
Q 007082 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG 527 (619)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (619)
+++|+.|||.+|.|..+-+.+|.++ .|+.|.+..-.+.|||.+.|+.+|+.+..........|..|+..
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~L 483 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPL 483 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccc
Confidence 9999999999999999889999988 89999999999999999999999998777766666667666543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-39 Score=315.48 Aligned_cols=365 Identities=21% Similarity=0.295 Sum_probs=306.0
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCCCCEEeCCCCCCCChhhHhhhcCCCCC
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~~l~~l~~L 142 (619)
+...+.||+++|. +...-+..|.++++|+.+++..|. ++. ++.++. ..+|+.|+|.+| .++...-+.+.-++.|
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELSALPAL 151 (873)
T ss_pred ccceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhh--cccccccccceeEEeeecc-ccccccHHHHHhHhhh
Confidence 3468899999998 666677789999999999999987 433 334554 457999999999 7887778888899999
Q ss_pred cEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC
Q 007082 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (619)
Q Consensus 143 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 222 (619)
|.|||+.|.++......|..-.++++|+|++|.|+......|.++.+|..|.|+.|.++...+..|.++++|+.|+|..|
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 99999999999887778888889999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCC-----CCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhh
Q 007082 223 GVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296 (619)
Q Consensus 223 ~l~~-----l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 296 (619)
+|.. +.++++|+.|.+..|.+..+.++.| .+.++++|+++.|++...... +
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-----------------------~ 288 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-----------------------W 288 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-----------------------c
Confidence 8874 4578888888888888888877766 666666666666666554443 4
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+.+++.|+.|++++|.|....+..+... ++|++|+|++|+++......| ..+..|+.|+|++|.+.......|..+.+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 5567888888888888887777777665 889999999988888877777 45888999999999998888888888999
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
|+.|||++|.+++.+... ...|.++++|+.|.+.+|++......+|.++++|++|||.+|.|..+-++.|+
T Consensus 367 L~~LdLr~N~ls~~IEDa---------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDA---------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhhhcCcCCeEEEEEecc---------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 999999999988776552 12688899999999999999877778899999999999999999998888998
Q ss_pred CCCCCCEEEcCC
Q 007082 457 SLSKLTNLSIRD 468 (619)
Q Consensus 457 ~l~~L~~L~L~~ 468 (619)
.+ .|++|.+..
T Consensus 438 ~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 438 PM-ELKELVMNS 448 (873)
T ss_pred cc-hhhhhhhcc
Confidence 88 888887654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.4e-33 Score=263.75 Aligned_cols=404 Identities=19% Similarity=0.217 Sum_probs=275.4
Q ss_pred CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L 145 (619)
.+++|++++|.. ...|.+++.+..++.|+.++|+ + ...++.+....+|+.|++++|. +. ..++.++.+..|+.+
T Consensus 69 ~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~-l-s~lp~~i~s~~~l~~l~~s~n~-~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 69 CLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNK-L-SELPEQIGSLISLVKLDCSSNE-LK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred ceeEEEeccchh--hhCCHHHHHHHHHHHhhcccch-H-hhccHHHhhhhhhhhhhccccc-ee-ecCchHHHHhhhhhh
Confidence 466777777652 2556666777777777777765 3 3345556667777777777773 22 234556666777777
Q ss_pred EccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC
Q 007082 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225 (619)
Q Consensus 146 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 225 (619)
+..+|.+... |+.+..+.+|..+++.+|.+....+..+. ++.|++|+...|.+. ..|..++.+.+|..|++.+|++.
T Consensus 143 ~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hccccccccC-chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 7777777654 44456666777777777777766555544 777888887777665 45667788888888888888776
Q ss_pred CCC---CCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcC
Q 007082 226 KLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQM 300 (619)
Q Consensus 226 ~l~---~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~ 300 (619)
.+| .|..|++++++.|++..+|+... .++++..|++..|++...|.... .+.+|.+||+++|.+++. ..++++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc
Confidence 544 56667777777777777777666 77777777777777777776543 456777777777777777 556666
Q ss_pred CCCCEEeCcCCCCChhHH-----------HHHHh-----------------------------cCCCCcEEEccCCCCCC
Q 007082 301 KALEHLDLSSSMIGDDSV-----------EMVAC-----------------------------VGANLRNLNLSNTRFSS 340 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~-----------~~~~~-----------------------------~~~~L~~L~L~~n~l~~ 340 (619)
+|+.|.+.+|.+...-- ..+.. ...+.+.|++++-+++.
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 77777777775421110 00000 00345566666666666
Q ss_pred chHHHHHh-cCCCCcEEEccCCCCChH-----------------------HHHHhhCCCCCcEEEccCCccCcchhcccc
Q 007082 341 AGVGILAG-HLPNLEILSLSGTQIDDY-----------------------AISYMSMMPSLKFIDISNTDIKGFIQQVGA 396 (619)
Q Consensus 341 ~~~~~~~~-~~~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 396 (619)
.+.+.|-. .-.-....+++.|++... ++..++.+++|..|++++|.+.. +|.
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~--- 452 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPE--- 452 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cch---
Confidence 54444321 111255666666665432 34455667888888888777644 444
Q ss_pred chhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082 397 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 476 (619)
Q Consensus 397 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 476 (619)
.++.+-.|+.|+++.|.+. ..|..+..+..++.+-.++|++....++.+.++.+|+.|||.+|.+... |
T Consensus 453 ---------e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-P 521 (565)
T KOG0472|consen 453 ---------EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-P 521 (565)
T ss_pred ---------hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-C
Confidence 4667777888888888877 5677666666777777777888888888899999999999999999854 6
Q ss_pred ccCCCCCCCcEEEcCCCccC
Q 007082 477 GSFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 477 ~~~~~~~~L~~l~l~~n~~~ 496 (619)
..++++.+|++|+++||||.
T Consensus 522 p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 522 PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhccccceeEEEecCCccC
Confidence 67999999999999999995
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-31 Score=274.57 Aligned_cols=437 Identities=21% Similarity=0.242 Sum_probs=321.1
Q ss_pred HhccccccCchHHHH-HHHHHHHHhhcc---ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082 29 RQRRSLERLPAHLAD-SLLRHLIRRRLI---FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (619)
Q Consensus 29 ~~~~~l~~lp~~l~~-~~l~~L~~~~~~---~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 104 (619)
.+...++.||..+.. +.+.+|...+.. .|--+-.-+-+|+.||++.|. ...+|..+..+++|+.|+++.|. +.
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~-i~ 81 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNY-IR 81 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc--cccCCchhhhHHHHhhcccchhh-Hh
Confidence 345667777765544 334444443322 221111113459999999986 34666677788899999999875 54
Q ss_pred hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCC-------------------C
Q 007082 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ-------------------N 165 (619)
Q Consensus 105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~-------------------~ 165 (619)
.. +.+..++.+|++|.|.+|. + ...|..+..+.+|+.|++++|.+...+. .+..++ .
T Consensus 82 ~v-p~s~~~~~~l~~lnL~~n~-l-~~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 82 SV-PSSCSNMRNLQYLNLKNNR-L-QSLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred hC-chhhhhhhcchhheeccch-h-hcCchhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhcccc
Confidence 43 3567788999999999983 3 3457778888999999999987764321 111111 2
Q ss_pred CCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC--------------------
Q 007082 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-------------------- 225 (619)
Q Consensus 166 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-------------------- 225 (619)
.+.+++..|.+.+.++..+..+.. .|++..|.+.. ..+..+++|+.|....|++.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT 232 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence 555666666666666555555554 58888887762 22344444444444444433
Q ss_pred CC---CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCC
Q 007082 226 KL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMK 301 (619)
Q Consensus 226 ~l---~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~ 301 (619)
.+ +.-.+|+++++++|.+..+|+++..+++|+.+....|.+...+.... ...+|+.|.+.+|.+..+ +.....+
T Consensus 233 ~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~ 310 (1081)
T KOG0618|consen 233 TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLK 310 (1081)
T ss_pred eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccc
Confidence 22 12357889999999999999888899999999999999977776433 567888899999988888 4555689
Q ss_pred CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 007082 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (619)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 381 (619)
.|++|++..|.+...+...+......|..|+.+.|++....... ....+.|+.|.+.+|.+++.....+.++++|+.|+
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 99999999999887666555444244788888888877653211 13467899999999999998877888999999999
Q ss_pred ccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCC
Q 007082 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461 (619)
Q Consensus 382 L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 461 (619)
|++|++..+... .+.++..|++|+||+|+++ .+|..+..++.|++|...+|.+...+ .+..++.|
T Consensus 390 LsyNrL~~fpas------------~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL 454 (1081)
T KOG0618|consen 390 LSYNRLNSFPAS------------KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQL 454 (1081)
T ss_pred ecccccccCCHH------------HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcc
Confidence 999999776666 7899999999999999998 66799999999999999999998854 78889999
Q ss_pred CEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 462 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
+.+|++.|+++........+.++|++||++||.+
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999999999876555555669999999999986
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=9.6e-31 Score=257.51 Aligned_cols=358 Identities=21% Similarity=0.237 Sum_probs=194.0
Q ss_pred CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCE
Q 007082 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (619)
Q Consensus 89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 168 (619)
+|-.+-.++++|..-.+..+.....+++++.|.|... .+ ...|+.++.+.+|++|.+.+|.+... -..+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L-~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL-EQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hh-hhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence 4455666777766333555555666666666666665 22 23455566666666666666666543 233556666666
Q ss_pred EEcCCCCCChh-HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcc
Q 007082 169 LDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCT 242 (619)
Q Consensus 169 L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~ 242 (619)
+.+..|++... +|..+-.+..|..|||+.|++. ..|..+...+++-+|+|++|+|..+| ++..|-.|+|++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 66666654322 2444555666666666666665 34555666666666666666666655 34555566666666
Q ss_pred ccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHH
Q 007082 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVE 319 (619)
Q Consensus 243 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~ 319 (619)
+..+|+.+..+..|++|.+++|.+....-. ....+++|+.|.+++.+-+-. ..+..+.+|..+|++.|.++ ..|+
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 666666666666666666666654422111 011233444444444433222 34445555555666655554 2344
Q ss_pred HHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccch
Q 007082 320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAET 398 (619)
Q Consensus 320 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~ 398 (619)
.+..+ ++|+.|+|++|+|+...... +...+|++|+++.|+++. .|.++..++.|+.|.+.+|+++-. +|.
T Consensus 240 cly~l-~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS----- 310 (1255)
T KOG0444|consen 240 CLYKL-RNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS----- 310 (1255)
T ss_pred HHhhh-hhhheeccCcCceeeeeccH--HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc-----
Confidence 44444 55556666666555532221 234455555666665554 234455555555555555554322 333
Q ss_pred hhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 399 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
.++.+..|+++..++|.+. ..|+.++.|..|+.|.|+.|.+-. .|+.+--++.|+.||+..|.
T Consensus 311 -------GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 311 -------GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -------chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 4555555555555555554 555555555555555555555443 24455555555555555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.5e-30 Score=254.59 Aligned_cols=356 Identities=18% Similarity=0.242 Sum_probs=219.1
Q ss_pred CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L 145 (619)
-++..|+++|..-.+.+|.....+++++-|.|...+ + ...+..++.|.+|+.|.+++|. +. .....+..++.|+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L-~~vPeEL~~lqkLEHLs~~HN~-L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-L-EQVPEELSRLQKLEHLSMAHNQ-LI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-h-hhChHHHHHHhhhhhhhhhhhh-hH-hhhhhhccchhhHHH
Confidence 366677777763345666667777777777776644 2 2334556677777777777763 32 223445666777777
Q ss_pred EccCCCCChhH-HHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC
Q 007082 146 WLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 146 ~L~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 224 (619)
.+.+|.+...+ |..+-.+..|+.|+|++|++... |..+..-+++-.|+|++|+|..++...|.+++.|-.|+|++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 77776553322 33444666777777777776543 55666666777777777777666656666777777777777777
Q ss_pred CCCC----CCCCCcEEEcCCcccccc-ccccCCCCCccEEeccCcccc--chhHHHhhhccCCCcEEeccCCCcchh-hh
Q 007082 225 TKLP----NISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRF-CF 296 (619)
Q Consensus 225 ~~l~----~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~ 296 (619)
..+| .+..|++|.|++|.+... ...+..+.+|+.|.+++.+-+ .+|.. ...+.+|..+|++.|++..+ ..
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCCcchHH
Confidence 7665 456677777777765521 122224556666666665433 33332 23566677777777777666 45
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCCh-HHHHHhhCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMP 375 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~ 375 (619)
+..+++|+.|++++|.++...... ... .+|++|+++.|+++.. |..+ ..+++|+.|.+.+|+++- -+|..++.+.
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~-~~W-~~lEtLNlSrNQLt~L-P~av-cKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTE-GEW-ENLETLNLSRNQLTVL-PDAV-CKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccH-HHH-hhhhhhccccchhccc-hHHH-hhhHHHHHHHhccCcccccCCccchhhhh
Confidence 666677777777777766543321 222 5677777777777665 3343 246677777777766442 1345566667
Q ss_pred CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (619)
Q Consensus 376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (619)
.|+.+..++|.+ ...|+ .+..|..|+.|.|++|.+- ..|+++.-++.|+.||+..|.
T Consensus 317 ~Levf~aanN~L-ElVPE------------glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 317 QLEVFHAANNKL-ELVPE------------GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhHHHHhhcccc-ccCch------------hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 777777766665 34555 5667777777777777665 456666667777777777764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-31 Score=249.78 Aligned_cols=417 Identities=21% Similarity=0.246 Sum_probs=280.4
Q ss_pred HHHHHhccccccCchHHHHHHHHHHHHhhcc------ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcC
Q 007082 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVA 98 (619)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~ 98 (619)
..+..++..+..+|+.+.+ +..+...... +|..... ..++..|+.++|.. ...++.++++-.|..|+..
T Consensus 71 ~vl~~~~n~l~~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s-~~~l~~l~~s~n~~--~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGE--LEALKSLNVSHNKLSELPEQIGS-LISLVKLDCSSNEL--KELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eEEEeccchhhhCCHHHHH--HHHHHHhhcccchHhhccHHHhh-hhhhhhhhccccce--eecCchHHHHhhhhhhhcc
Confidence 3445577788888888877 4444333322 3432222 23577788888762 3566667777788888888
Q ss_pred CCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh
Q 007082 99 DCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD 178 (619)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 178 (619)
+|+ ++ ..++++..+.+|..|++.+| .+....+..+. ++.|++||...|.++.. |+.++.+.+|+-|++..|++..
T Consensus 146 ~N~-i~-slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 146 NNQ-IS-SLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred ccc-cc-cCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccccc
Confidence 776 43 34556677778888888887 55555555554 78888888888877654 5557888888888888888765
Q ss_pred hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC----CCCCCcEEEcCCccccccccccCCCC
Q 007082 179 LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKA 254 (619)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~~~l~~l~~~~~~~~ 254 (619)
. | .|.+|..|++|.+..|.|..........++++..||+..|+++++| -+.+|+.||+++|.++.+|..++++
T Consensus 221 l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl- 297 (565)
T KOG0472|consen 221 L-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL- 297 (565)
T ss_pred C-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence 4 3 7888888888888888887555555668888888888888888877 3677888888888888888888888
Q ss_pred CccEEeccCccccchhHHHhhh----------------------------------------ccCCCcEEeccCCCcchh
Q 007082 255 PLAKISLAGTTFINEREAFLYI----------------------------------------ETSLLSFLDVSNSSLSRF 294 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~~~----------------------------------------~~~~L~~L~l~~n~l~~~ 294 (619)
+|+.|.+.||.+.++-...... ...+.+.|++++-.++.+
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V 377 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV 377 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence 8888888888776543322110 011122333333333332
Q ss_pred --hhhh--cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082 295 --CFLT--QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (619)
Q Consensus 295 --~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 370 (619)
..|. .-.-....++++|++.+. |..+..+-.-.+.+.+++|.++ ..+..+ ..+++|..|++++|-+.+.+ ..
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~is-fv~~~l-~~l~kLt~L~L~NN~Ln~LP-~e 453 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKIS-FVPLEL-SQLQKLTFLDLSNNLLNDLP-EE 453 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccc-cchHHH-Hhhhcceeeecccchhhhcc-hh
Confidence 1111 111133444444444322 1111111011222333333333 223333 56899999999999887755 44
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
++.+..|+.|+++.|+|.. .|. .+..+..++.+-.++|++....+..+.++.+|..|||.+|.+..+
T Consensus 454 ~~~lv~Lq~LnlS~NrFr~-lP~------------~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFRM-LPE------------CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred hhhhhhhheeccccccccc-chH------------HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC
Confidence 6678889999999998854 454 455566677777788999977777799999999999999999885
Q ss_pred hHHhhcCCCCCCEEEcCCCccC
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
|..++++++|++|+++||+|.
T Consensus 521 -Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 -PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -ChhhccccceeEEEecCCccC
Confidence 558899999999999999998
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=5.7e-28 Score=248.87 Aligned_cols=431 Identities=19% Similarity=0.223 Sum_probs=271.4
Q ss_pred HHHHHHhccccccCchHHHHHHHHHHHHhhcc------ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEc
Q 007082 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV 97 (619)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L 97 (619)
++.++.++..+...|..++. +.+|...+.. .|.... ...+++.|.|..|. -...|..+..+.+|++|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITL--LSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR--LQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhh--HHHHhhcccchhhHhhCchhhh-hhhcchhheeccch--hhcCchhHHhhhccccccc
Confidence 56667777888888877666 4443333221 121111 12345555555543 2344445555555555555
Q ss_pred CCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCC
Q 007082 98 ADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVT 177 (619)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 177 (619)
+.|+ +... +.-+..+..++.+..++|.. ...++.. .++.+++..+.+.+..+..+..+++ .|+|++|.+.
T Consensus 122 S~N~-f~~~-Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 122 SFNH-FGPI-PLVIEVLTAEEELAASNNEK-----IQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred chhc-cCCC-chhHHhhhHHHHHhhhcchh-----hhhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 5554 2211 11233333333333333311 0111111 1444455544444444333333333 4666666554
Q ss_pred hhHHHHhhcC--------------------CCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC----CCCCC
Q 007082 178 DLVLRSLQVL--------------------TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSL 233 (619)
Q Consensus 178 ~~~~~~~~~l--------------------~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L 233 (619)
.. .+.++ ++|+.|+.+.|.++...+ ...-.+|+++++++|.++.+| .+.+|
T Consensus 192 ~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 192 VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccc
Confidence 21 12222 344455555554442111 112357889999999888877 57899
Q ss_pred cEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhh--hhhcCCC-CCEEeCcC
Q 007082 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKA-LEHLDLSS 310 (619)
Q Consensus 234 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~-L~~L~l~~ 310 (619)
+.++..+|.+.++|..++...+|+.|.+..|.+..+++.. .+.+.|++|++..|.+..++ .+..... ++.|..+.
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence 9999999999999999999999999999999888887743 35788999999999888773 3333333 66777777
Q ss_pred CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (619)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~ 390 (619)
|.+....-..-... +.|+.|.+.+|.+++.....+ .++..|+.|+|++|++...+...+.+++.|++|+||+|+++..
T Consensus 345 n~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNH-AALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred ccccccccccchhh-HHHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 76654332111112 678888899999988766666 5688999999999988888878888889999999999988754
Q ss_pred hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
. . .+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++......-...++|++||++||.
T Consensus 423 p-~------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 423 P-D------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-H------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 4 4 6788888889988888887 455 77888899999999998877643333333789999999987
Q ss_pred cCchhhccCCCCCCCcEEEcCCC
Q 007082 471 LTNSGLGSFKPPRSLKLLDLHGG 493 (619)
Q Consensus 471 l~~~~~~~~~~~~~L~~l~l~~n 493 (619)
-.......|..+..+...++.-|
T Consensus 488 ~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 488 RLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccccchhhhHHhhhhhheecccC
Confidence 44444445555666666666655
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-26 Score=216.41 Aligned_cols=428 Identities=18% Similarity=0.139 Sum_probs=252.4
Q ss_pred HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (619)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 104 (619)
..++|+..++..||.++|+ ..+.+.|..|. |+..-+.+|+.+++||.|||++|. |+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~----------------------~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is 104 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP----------------------ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-IS 104 (498)
T ss_pred ceEEccCCCcccCcccCCC----------------------cceEEEeccCC-cccCChhhccchhhhceecccccc-hh
Confidence 4678899999999999988 68999999998 888888899999999999999987 99
Q ss_pred hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (619)
Q Consensus 105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 184 (619)
.+.+.+|.++++|..|.+.++..+++..-..|+++..|+.|.+.-|.+.-...++|..+++|..|.+..|.+..+.-..|
T Consensus 105 ~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 105 FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 99999999999999998888658888888888899999999888888888888889999999999998888776655577
Q ss_pred hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCC--CccEEecc
Q 007082 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKA--PLAKISLA 262 (619)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~ 262 (619)
..+..++.+.+..|.+-. ..+++.+.... .-+.+ ..+...-.....+.+..+..+.+.-+.+. .+.+-..+
T Consensus 185 ~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred cchhccchHhhhcCcccc-----ccccchhhhHH-hhchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 888888888887765211 01111111000 00000 00001111111122222222222222111 11111112
Q ss_pred CccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC
Q 007082 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 340 (619)
.+....+-+...|..+++|+.|++++|.++.+ .+|.....+++|.+..|++....-..|..+ ..|+.|+|.+|+|+.
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l-s~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL-SGLKTLSLYDNQITT 336 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc-ccceeeeecCCeeEE
Confidence 22222333334455666666666666666555 456666666666666666665555555555 666666666666666
Q ss_pred chHHHHHhcCCCCcEEEccCCCCChH-----HHHHh-----------hCCCCCcEEEccCCccCcchhccccchhhhh-h
Q 007082 341 AGVGILAGHLPNLEILSLSGTQIDDY-----AISYM-----------SMMPSLKFIDISNTDIKGFIQQVGAETDLVL-S 403 (619)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~-----------~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~-~ 403 (619)
..+..| ....+|.+|++-.|.+.-. ..+++ +....++.+.+++..+...--. +.++..+. .
T Consensus 337 ~~~~aF-~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~ee~~~~~s 414 (498)
T KOG4237|consen 337 VAPGAF-QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-GPEELGCLTS 414 (498)
T ss_pred Eecccc-cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC-CccccCCCCC
Confidence 555544 4455666666655543310 00111 1122445555555444322111 00000000 0
Q ss_pred HHhhccCCcCCEE-EccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCC
Q 007082 404 LTALQNLNHLERL-NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 482 (619)
Q Consensus 404 ~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 482 (619)
-+.-..++-+.+. ..++..+. .+|..+ .....+|++.+|.++.++.. .+.+| .+|+++|+++...-..|.++
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccch
Confidence 0001112222222 22222222 333322 23456778888888775544 45667 78888888877766777777
Q ss_pred CCCcEEEcCCC
Q 007082 483 RSLKLLDLHGG 493 (619)
Q Consensus 483 ~~L~~l~l~~n 493 (619)
.++..+-++.|
T Consensus 488 tql~tlilsyn 498 (498)
T KOG4237|consen 488 TQLSTLILSYN 498 (498)
T ss_pred hhhheeEEecC
Confidence 77777777665
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-24 Score=203.76 Aligned_cols=107 Identities=23% Similarity=0.233 Sum_probs=101.7
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (619)
.|..+++|++|+|++|++++.-+.+|.+...+++|.|..|++..+...+|.++..|+.|+|.+|+|+...|..|....+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 69999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cEEEcCCCccCCHHHHHHHHHhCCCee
Q 007082 486 KLLDLHGGWLLTEDAILQFCKMHPRIE 512 (619)
Q Consensus 486 ~~l~l~~n~~~~~~~~~~~~~~~~~~~ 512 (619)
..|++-+|||.|+|-+.|+.+|+..-.
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCC
Confidence 999999999999999999999986443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.6e-20 Score=216.30 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=71.7
Q ss_pred HHHhcCCCccEEEcCCCCC-----CChHHHHHhhCCC-CCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHH
Q 007082 84 AYLGAFRYLRSLNVADCRR-----VTSSALWALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI 157 (619)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~-----~~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 157 (619)
..|.++++|+.|.+..+.. +....+..+..++ +|+.|.+.++. +. ..|..+ ...+|++|++.++.+... +
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~-~lP~~f-~~~~L~~L~L~~s~l~~L-~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LR-CMPSNF-RPENLVKLQMQGSKLEKL-W 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CC-CCCCcC-CccCCcEEECcCcccccc-c
Confidence 3456666666666643320 0111122233332 46666665552 22 122222 345566666666555432 2
Q ss_pred HHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC-CCCCCC---CCCCC
Q 007082 158 ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTKLP---NISSL 233 (619)
Q Consensus 158 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~l~---~l~~L 233 (619)
..+..+++|+.|+|+++......| .+..+++|++|++++|......|..+..+++|+.|++++| .+..+| ++++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 334455666666665544222222 2455566666666555433444555555555555555553 233333 23444
Q ss_pred cEEEcCCc
Q 007082 234 ECLNLSNC 241 (619)
Q Consensus 234 ~~L~l~~~ 241 (619)
+.|++++|
T Consensus 707 ~~L~Lsgc 714 (1153)
T PLN03210 707 YRLNLSGC 714 (1153)
T ss_pred CEEeCCCC
Confidence 44444444
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=7.7e-20 Score=210.58 Aligned_cols=335 Identities=17% Similarity=0.145 Sum_probs=242.0
Q ss_pred hHhhhcCCCCCcEEEccCCCC------ChhHHHHhhcCC-CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchh
Q 007082 132 GMKHLLSISTLEKLWLSETGL------TADGIALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204 (619)
Q Consensus 132 ~~~~l~~l~~L~~L~L~~~~~------~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 204 (619)
...+|.++++|+.|.+..+.. ....+..|..++ +|+.|++.++.+... |..| ...+|++|++.++.+.. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-c
Confidence 345677888999888865532 112234455553 688999888876543 4555 46889999999988764 4
Q ss_pred hHhhcCCCCCCEEecCCCC-CCCCC---CCCCCcEEEcCCcc-ccccccccCCCCCccEEeccCcc-ccchhHHHhhhcc
Q 007082 205 AAVLKMFPRLSFLNLAWTG-VTKLP---NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIET 278 (619)
Q Consensus 205 ~~~~~~~~~L~~L~l~~n~-l~~l~---~l~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 278 (619)
+..+..+++|+.|+++++. +..++ .+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|... .+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CC
Confidence 5567788999999998763 44444 57889999998874 56788888888999999999875 44444322 67
Q ss_pred CCCcEEeccCCCcc-hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCC-------CchHHHHHhcC
Q 007082 279 SLLSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS-------SAGVGILAGHL 350 (619)
Q Consensus 279 ~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~~~ 350 (619)
++|+.|++++|... .++. ...+|+.|++++|.+...+ ..+ .+ ++|++|.+.++... ...+ .....+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP-~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFP-SNL-RL-ENLDELILCEMKSEKLWERVQPLTP-LMTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccccc-ccc-cc-cccccccccccchhhccccccccch-hhhhcc
Confidence 88999999888542 2222 2468899999988876432 222 23 78888888764321 1111 112346
Q ss_pred CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 430 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 430 (619)
++|+.|++++|......|..++++++|+.|++++|...+.+|. .. ++++|+.|++++|.....+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCcccccccc
Confidence 7999999999987777788899999999999999876666665 33 6889999999998544444432
Q ss_pred ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc-cCchhhccCCCCCCCcEEEcCCCccC
Q 007082 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~ 496 (619)
..+|+.|+|++|.++. +|..+..+++|+.|+|++|+ +.. ++.....++.|+.+++++|+-.
T Consensus 845 ---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 845 ---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCccc
Confidence 4689999999999987 56788999999999999954 554 5556777899999999998643
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.6e-20 Score=200.53 Aligned_cols=262 Identities=18% Similarity=0.190 Sum_probs=133.7
Q ss_pred CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCccc
Q 007082 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTI 243 (619)
Q Consensus 165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l 243 (619)
.-..|+++.+.++. +|..+. ++|+.|++.+|+++.. |. ..++|++|++++|+++.+|. .++|+.|++++|.+
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCch
Confidence 34556666665553 233332 2566666666655532 21 23556666666666655543 24566666666665
Q ss_pred cccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHh
Q 007082 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323 (619)
Q Consensus 244 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 323 (619)
..+|.. ..+|+.|++++|.+..++.. .++|+.|++++|.++.++.+ ..+|+.|++++|.+++.+ .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP-~---- 339 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP-T---- 339 (788)
T ss_pred hhhhhc---hhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCCC--cccccccccccCcccccc-c----
Confidence 555442 23455566666655554431 24556666666655554321 234555566666555322 1
Q ss_pred cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhh
Q 007082 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403 (619)
Q Consensus 324 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 403 (619)
...+|+.|++++|+++..+. ..++|+.|++++|+++..+ . ...+|+.|++++|++++. |.
T Consensus 340 lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~---------- 399 (788)
T PRK15387 340 LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV---------- 399 (788)
T ss_pred cccccceEecCCCccCCCCC-----CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC----------
Confidence 11356666666666555321 1345555666666655422 1 123556666666665532 22
Q ss_pred HHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhcc
Q 007082 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 478 (619)
Q Consensus 404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 478 (619)
. .++|+.|++++|++++ +|.. ..+|+.|++++|+++. +|..+..+++|+.|+|++|++++..+..
T Consensus 400 --l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 400 --L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred --c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHH
Confidence 1 1345566666666553 3322 2345556666666654 3445555666666666666666554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=2e-20 Score=199.68 Aligned_cols=266 Identities=20% Similarity=0.215 Sum_probs=199.7
Q ss_pred CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 219 (619)
..-..|+++++.++..+. .+. ++|+.|++.+|+++.. |. ..++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 456678888888775433 332 3688888888887754 22 257888888888888754 32 2467888888
Q ss_pred CCCCCCCCCCC-CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhh
Q 007082 220 AWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT 298 (619)
Q Consensus 220 ~~n~l~~l~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 298 (619)
.+|.+..++.+ ++|+.|++++|.++.+|.. .++|+.|++++|.+..++.. ...|+.|++++|.++.++.+
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----p~~L~~L~Ls~N~L~~LP~l- 340 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPTL- 340 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----cccccccccccCcccccccc-
Confidence 88888877643 5688888888888877753 46788888888888876542 24688888888888876532
Q ss_pred cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCc
Q 007082 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (619)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 378 (619)
..+|++|++++|.+++.+. ..++|+.|++++|.++..+ . ..++|+.|++++|.+++.+. ..++|+
T Consensus 341 -p~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP-~----l~~~L~~LdLs~N~Lt~LP~----l~s~L~ 405 (788)
T PRK15387 341 -PSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-A----LPSGLKELIVSGNRLTSLPV----LPSELK 405 (788)
T ss_pred -ccccceEecCCCccCCCCC-----CCcccceehhhccccccCc-c----cccccceEEecCCcccCCCC----cccCCC
Confidence 2579999999999886432 1278899999999988753 2 24689999999999986442 246899
Q ss_pred EEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 379 ~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
.|++++|++++ +|. . ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 406 ~LdLS~N~Lss-IP~------------l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 406 ELMVSGNRLTS-LPM------------L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred EEEccCCcCCC-CCc------------c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 99999999976 343 1 246788999999998 67888999999999999999999988777643
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.4e-18 Score=172.52 Aligned_cols=282 Identities=24% Similarity=0.217 Sum_probs=137.2
Q ss_pred EEEcCCCCCCC-hHHHHHhhCCCCCCEEeCCCCCCCChhhH----hhhcCCCCCcEEEccCCCCCh------hHHHHhhc
Q 007082 94 SLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSISTLEKLWLSETGLTA------DGIALLSS 162 (619)
Q Consensus 94 ~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~------~~~~~~~~ 162 (619)
.|+|..+. ++ ......+..+++|++|++++| .+++... ..+...+.|++++++++.+.. ..+..+..
T Consensus 2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 35565554 33 333334556667888888877 4544322 223355667777777766551 12344556
Q ss_pred CCCCCEEEcCCCCCChhHHHHhhcCCC---CCEEEccCCccCchhh----HhhcCCCCCCEEecCCCCCCCCCCCCCCcE
Q 007082 163 LQNLSVLDLGGLPVTDLVLRSLQVLTK---LEYLDLWGSQVSNRGA----AVLKMFPRLSFLNLAWTGVTKLPNISSLEC 235 (619)
Q Consensus 163 l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~ 235 (619)
+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++... ..+..+ .++|+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~------------------~~~L~~ 141 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL------------------PPALEK 141 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC------------------CCCceE
Confidence 667777777776665544444443333 6666666666553211 122222 033344
Q ss_pred EEcCCcccc-----ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC
Q 007082 236 LNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310 (619)
Q Consensus 236 L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 310 (619)
|++++|.++ .+...+..+++|++|++++|.+.+....... ..+..+++|++|++++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------------------~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA-------------------EGLKANCNLEVLDLNN 202 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH-------------------HHHHhCCCCCEEeccC
Confidence 444444333 1222222333444444444443321100000 1233345666666666
Q ss_pred CCCChhHHHHHHhc---CCCCcEEEccCCCCCCchHHHHHhcC----CCCcEEEccCCCCChH----HHHHhhCCCCCcE
Q 007082 311 SMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDY----AISYMSMMPSLKF 379 (619)
Q Consensus 311 n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~ 379 (619)
|.+++.....+... +++|++|++++|.+++.....+...+ +.|++|++++|.+++. ....+..+++|++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 66554443332211 14566666666666654444333322 5666666666666522 1233445566677
Q ss_pred EEccCCccCcchhccccchhhhhhHHhhccC-CcCCEEEccCCC
Q 007082 380 IDISNTDIKGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQ 422 (619)
Q Consensus 380 L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~ 422 (619)
+++++|.+....... ....+... +.|+++++.+|.
T Consensus 283 l~l~~N~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 283 LDLRGNKFGEEGAQL--------LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EECCCCCCcHHHHHH--------HHHHHhhcCCchhhcccCCCC
Confidence 777776665431110 00023333 566666666654
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=9.7e-18 Score=168.17 Aligned_cols=278 Identities=26% Similarity=0.269 Sum_probs=165.7
Q ss_pred EEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHH----HhhCCCCCCEEeCCCCCCCC------hhhHhhhcC
Q 007082 69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS 138 (619)
Q Consensus 69 ~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~----~l~~~~~L~~L~L~~~~~l~------~~~~~~l~~ 138 (619)
.|+|..+..-...+...+..+++|+.|++++|. ++..... .+...++|++|+++++. +. ......+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 466766664446677777888888888888877 5444332 24466778888888873 33 122345567
Q ss_pred CCCCcEEEccCCCCChhHHHHhhcCCC---CCEEEcCCCCCChh----HHHHhhcC-CCCCEEEccCCccCch----hhH
Q 007082 139 ISTLEKLWLSETGLTADGIALLSSLQN---LSVLDLGGLPVTDL----VLRSLQVL-TKLEYLDLWGSQVSNR----GAA 206 (619)
Q Consensus 139 l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~i~~~----~~~ 206 (619)
+++|+.|++++|.+....+..+..+.+ |++|++++|.+.+. ....+..+ ++|++|++++|.+++. ...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 888888888888887655555554444 88999988887742 23344566 8889999988888743 233
Q ss_pred hhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHH---HhhhccCCCcE
Q 007082 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSF 283 (619)
Q Consensus 207 ~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~ 283 (619)
.+..+++|++|++++|.++.- .+..++..+...++|+.|++++|.+.+.... ..+..+++|++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHHhCCCcCEEECcCCCCchH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 455666677777666665420 0001122222233444444444443322111 11234555666
Q ss_pred EeccCCCcchh--h-hhh----cCCCCCEEeCcCCCCChhHHHHH----HhcCCCCcEEEccCCCCCCchHHHHH---hc
Q 007082 284 LDVSNSSLSRF--C-FLT----QMKALEHLDLSSSMIGDDSVEMV----ACVGANLRNLNLSNTRFSSAGVGILA---GH 349 (619)
Q Consensus 284 L~l~~n~l~~~--~-~~~----~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~---~~ 349 (619)
|++++|.++.. . ... ..+.|++|++++|.+++.....+ ... ++|+.+++++|.+++.....+. ..
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 66666655532 1 111 23678888888888774433332 233 6788888888888765333221 22
Q ss_pred C-CCCcEEEccCCCC
Q 007082 350 L-PNLEILSLSGTQI 363 (619)
Q Consensus 350 ~-~~L~~L~l~~n~l 363 (619)
. +.|+++++.+|.+
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 3 5788888887754
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=4.2e-18 Score=183.38 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=123.2
Q ss_pred CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccc
Q 007082 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266 (619)
Q Consensus 189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 266 (619)
+...|+++++.++. +|..+ .+.|+.|++++|.++.++. .++|++|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 45666666666553 23222 2356666666666665542 3455666666665555554332 2455555555555
Q ss_pred cchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHH
Q 007082 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 346 (619)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 346 (619)
..+|..+ ..+|+.|++++|.++.. +..+ +++|+.|++++|+++.... .+
T Consensus 254 ~~LP~~l--------------------------~s~L~~L~Ls~N~L~~L-P~~l---~~sL~~L~Ls~N~Lt~LP~-~l 302 (754)
T PRK15370 254 TELPERL--------------------------PSALQSLDLFHNKISCL-PENL---PEELRYLSVYDNSIRTLPA-HL 302 (754)
T ss_pred CcCChhH--------------------------hCCCCEEECcCCccCcc-cccc---CCCCcEEECCCCccccCcc-cc
Confidence 5444322 13455555555555432 2111 1455555555555554321 11
Q ss_pred HhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426 (619)
Q Consensus 347 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 426 (619)
.++|+.|++++|.++..+.. + .++|+.|++++|.+++. |. .+ .++|+.|++++|+++ .
T Consensus 303 ---p~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~L-P~------------~l--~~sL~~L~Ls~N~L~-~ 360 (754)
T PRK15370 303 ---PSGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTSL-PA------------SL--PPELQVLDVSKNQIT-V 360 (754)
T ss_pred ---hhhHHHHHhcCCccccCCcc-c--cccceeccccCCccccC-Ch------------hh--cCcccEEECCCCCCC-c
Confidence 23455666666665543221 1 24566666666665542 22 12 145666666666665 3
Q ss_pred CcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch---hhccCCCCCCCcEEEcCCCccC
Q 007082 427 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS---GLGSFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 427 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~ 496 (619)
+|..+ .++|+.|+|++|+++.+++. +. +.|+.|++++|++++. .+..+...+.+..+++.+|++.
T Consensus 361 LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 361 LPETL--PPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CChhh--cCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 34433 24566666666666654332 22 2466666666666532 1222233356666666666664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.6e-17 Score=178.89 Aligned_cols=246 Identities=17% Similarity=0.215 Sum_probs=179.4
Q ss_pred CCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC--CCCCcEEEcCCc
Q 007082 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNC 241 (619)
Q Consensus 164 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~ 241 (619)
.+...|+++++.++.. |..+. +.|+.|++++|.++... ..+. .+|+.|++++|.++.++. ..+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~LtsLP-~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACIP--EQITTLILDNNELKSLP-ENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCCcCC-hhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence 4688999999888754 44442 58999999999998654 3332 589999999999998873 357999999999
Q ss_pred cccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHH
Q 007082 242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321 (619)
Q Consensus 242 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 321 (619)
.+..+|..+. .+|+.|++++|.+..+|..+ .++|+.|++++|.++.++.. ..++|+.|++++|.++.... .+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~-~l 323 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENL----PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPE-TL 323 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCcccccc----CCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCc-cc
Confidence 9999988764 58999999999999877543 25799999999988876321 12468888888888875432 22
Q ss_pred HhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhh
Q 007082 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 401 (619)
Q Consensus 322 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~ 401 (619)
.++|+.|++++|.++..+ ..+ +++|+.|++++|+++..+ ..+ .++|++|++++|+++..++.
T Consensus 324 ---~~sL~~L~Ls~N~Lt~LP-~~l---~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~-------- 385 (754)
T PRK15370 324 ---PPGLKTLEAGENALTSLP-ASL---PPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN-------- 385 (754)
T ss_pred ---cccceeccccCCccccCC-hhh---cCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh--------
Confidence 167888888888887753 333 468888888888887543 333 36788888888888754332
Q ss_pred hhHHhhccCCcCCEEEccCCCCCCCCcccc----cCCCCCCEEecCCCCCCc
Q 007082 402 LSLTALQNLNHLERLNLEQTQVSDATLFPL----STFKELIHLSLRNASLTD 449 (619)
Q Consensus 402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~ 449 (619)
+. .+|+.|++++|++. .+|..+ ..++++..|++.+|.++.
T Consensus 386 -----l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 386 -----LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -----HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 22 25778888888877 344433 334677888888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.8e-16 Score=131.17 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=145.2
Q ss_pred hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC
Q 007082 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375 (619)
Q Consensus 296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 375 (619)
.+..+.+++.|.++.|.++...| .++.+ .+|+.|++++|++.+.+... +.+++|+.|+++-|++.- .|..|+.+|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vpp-nia~l-~nlevln~~nnqie~lp~~i--ssl~klr~lnvgmnrl~~-lprgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPP-NIAEL-KNLEVLNLSNNQIEELPTSI--SSLPKLRILNVGMNRLNI-LPRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCceeecCC-cHHHh-hhhhhhhcccchhhhcChhh--hhchhhhheecchhhhhc-CccccCCCc
Confidence 34455677788888888875443 45555 78888888888888874433 568999999999888754 466789999
Q ss_pred CCcEEEccCCccCc-chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHh
Q 007082 376 SLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 454 (619)
Q Consensus 376 ~L~~L~L~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 454 (619)
.|+.||+++|++.. .+|. .|..++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+-. .|..
T Consensus 103 ~levldltynnl~e~~lpg------------nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpke 168 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPG------------NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKE 168 (264)
T ss_pred hhhhhhccccccccccCCc------------chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHH
Confidence 99999999998865 4666 6888899999999999997 778899999999999999998876 4678
Q ss_pred hcCCCCCCEEEcCCCccCchhhccCCCC---CCCcEEEcCCCccCCHH
Q 007082 455 LSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLHGGWLLTED 499 (619)
Q Consensus 455 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~ 499 (619)
++.+++|++|.+.+|+++-..|+ ++.+ .+-+.+.+..|||....
T Consensus 169 ig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCChH
Confidence 89999999999999999876554 3333 34456778899997643
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.4e-14 Score=126.84 Aligned_cols=209 Identities=20% Similarity=0.253 Sum_probs=146.0
Q ss_pred HHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhcc-------------ChhhHHHhcCCccEEeccCCCCCCh
Q 007082 14 IEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-------------FPSLLEVFKHNAEAIELRGENSVDA 80 (619)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------------~p~~~~~~~~~l~~L~Ls~~~~~~~ 80 (619)
+..||++|..+..=..-+..+..-...+.+..+.+|...+.. +...+.+|.+.++.||||.......
T Consensus 121 ~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s 200 (419)
T KOG2120|consen 121 VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS 200 (419)
T ss_pred HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH
Confidence 466899987663222222222222222333344455555433 2234556777899999999873344
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhh-cCCCCCcEEEccCCCCChhHHH-
Q 007082 81 EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGIA- 158 (619)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~- 158 (619)
.....+..|.+|+.|+|.+++ +.+.....+++-.+|+.|+|+.|+.++......+ .+|+.|..|+++.|.+......
T Consensus 201 tl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 566678899999999999987 7777777899999999999999998888776654 4899999999999977654433
Q ss_pred Hhhc-CCCCCEEEcCCCC--CChhHHHHh-hcCCCCCEEEccCC-ccCchhhHhhcCCCCCCEEecCCCC
Q 007082 159 LLSS-LQNLSVLDLGGLP--VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTG 223 (619)
Q Consensus 159 ~~~~-l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~ 223 (619)
.++. -++|+.|+++|+. +.....+.+ ..|++|.+|||+++ .++......|.+++.|++|.++.|.
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 2222 3689999999875 333333333 57999999999887 5666666677788777777777764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=1.2e-13 Score=148.82 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=98.7
Q ss_pred CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh
Q 007082 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455 (619)
Q Consensus 376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 455 (619)
.++.|+|++|.+.+.+|. .+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 478899999999998888 78999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEcCCCccCchhhccCCCC-CCCcEEEcCCCccCC
Q 007082 456 SSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT 497 (619)
Q Consensus 456 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~ 497 (619)
+.+++|+.|+|++|++++..|..+... ..+..+++.+|+..|
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999999988877653 467789999998876
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=5.1e-13 Score=124.81 Aligned_cols=198 Identities=21% Similarity=0.247 Sum_probs=108.6
Q ss_pred ccCCCcEEeccCCCcchh------hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082 277 ETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 350 (619)
.+++|++++||+|-+..- ..+.++..|++|.+.+|.+....-..++. .|..|. . ....+.-
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~--~--------~kk~~~~ 156 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA--V--------NKKAASK 156 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH--H--------HhccCCC
Confidence 344555555555544221 34455666666666666655433333321 111111 0 0011234
Q ss_pred CCCcEEEccCCCCChHHH----HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082 351 PNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 426 (619)
+.|+++....|++.+... ..|...+.|+.+.++.|.+...-. ..-...|..|++|++|||.+|-++..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------TALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--------HHHHHHHHhCCcceeeecccchhhhH
Confidence 567777777766654332 334456677777777776532100 01112567777777777777766543
Q ss_pred C----cccccCCCCCCEEecCCCCCCchhHHhh-----cCCCCCCEEEcCCCccCchhh----ccCCCCCCCcEEEcCCC
Q 007082 427 T----LFPLSTFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGL----GSFKPPRSLKLLDLHGG 493 (619)
Q Consensus 427 ~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~l~l~~n 493 (619)
. ...+..+++|++|++++|.+.......| ...|+|+.+.+.+|.++.... ..+...+.|..|++++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 2 2334566777777777777665433332 236778888888887765322 22334577888888888
Q ss_pred cc
Q 007082 494 WL 495 (619)
Q Consensus 494 ~~ 495 (619)
.+
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 87
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.42 E-value=2.2e-13 Score=130.02 Aligned_cols=322 Identities=23% Similarity=0.333 Sum_probs=172.1
Q ss_pred HhcC-CCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCC-CCChhHHH-Hh
Q 007082 86 LGAF-RYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LL 160 (619)
Q Consensus 86 ~~~~-~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~-~~ 160 (619)
+.++ ..|+.|++++|..+.+..+..+. +|++++.|.+.+|..+++.....++ .|++|++|++..| .+++.... .-
T Consensus 133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 3344 37999999999988888887776 8999999999999888888777776 6888888888875 45554444 22
Q ss_pred hcCCCCCEEEcCCCC-CChhHHHHh-hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEc
Q 007082 161 SSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNL 238 (619)
Q Consensus 161 ~~l~~L~~L~L~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l 238 (619)
..|++|++|+++.+. +++.....+ .+++.++.+.+.|+. +....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le-------------------------------- 258 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELE-------------------------------- 258 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHH--------------------------------
Confidence 356666666666553 222111111 122222222222210 00000
Q ss_pred CCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC-CCCChhH
Q 007082 239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SMIGDDS 317 (619)
Q Consensus 239 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~-n~l~~~~ 317 (619)
.+. ..-..+..+..+++.. +.+++..
T Consensus 259 ------~l~-----------------------------------------------~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 259 ------ALL-----------------------------------------------KAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred ------HHH-----------------------------------------------HHhccChHhhccchhhhccccchH
Confidence 000 0001112222222222 2344444
Q ss_pred HHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCCC-CChHHHHHhh-CCCCCcEEEccCCccCcc--hh
Q 007082 318 VEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIKGF--IQ 392 (619)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~L~~n~~~~~--~~ 392 (619)
...+...+..|+.|..+++ .+++.....+...+++|+.|-+++|+ +++.....++ +++.|+.+++..+..... +.
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 4444433344555555443 23444444444445555555555543 3332222222 334444444433322110 00
Q ss_pred ccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082 393 QVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (619)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 471 (619)
. .-.+++.|++|.+++|. +++.....+. ..-..+..|..+.|++++.
T Consensus 366 s------------ls~~C~~lr~lslshce~itD~gi~~l~--------------------~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 366 S------------LSRNCPRLRVLSLSHCELITDEGIRHLS--------------------SSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred h------------hccCCchhccCChhhhhhhhhhhhhhhh--------------------hccccccccceeeecCCCC
Confidence 0 12344555555555552 2222111111 0112245566666666654
Q ss_pred Cc-hhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeeecccccccCCCCC
Q 007082 472 TN-SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI 526 (619)
Q Consensus 472 ~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (619)
.. ...+.+..++.|+.+++.++.-.....+..+...+|.+++..+.....|++..
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~~v 469 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPGFV 469 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcccc
Confidence 33 34455667788899999999998999999999999999999888888776543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.1e-14 Score=135.01 Aligned_cols=212 Identities=24% Similarity=0.263 Sum_probs=138.9
Q ss_pred CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCC
Q 007082 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 327 (619)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 327 (619)
+..+|+++.+.++........-....|++++.|+++.|-+..+ .....+++|+.|+++.|.+....-.......+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3444445555544444333211233566666666666666554 455678888888888877543222111112278
Q ss_pred CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (619)
Q Consensus 328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~ 407 (619)
|+.|.++.|.++..........+|+|+.|++..|............+..|++|+|++|++....... ..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-----------~~ 267 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-----------KV 267 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-----------cc
Confidence 9999999999887666666677999999999998522222223345678899999999886553221 46
Q ss_pred ccCCcCCEEEccCCCCCCCC-ccc-----ccCCCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCch
Q 007082 408 QNLNHLERLNLEQTQVSDAT-LFP-----LSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
+.++.|..|+++.|.+.+.- |+. ...+++|++|+++.|++.... ...+..+++|+.|.+..|.++..
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 78888889999998887532 222 245788999999999886642 34556678888888888888753
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=5.4e-13 Score=124.69 Aligned_cols=168 Identities=26% Similarity=0.320 Sum_probs=116.1
Q ss_pred CCCcEEEccCCCCCCchH---HHHHhcCCCCcEEEccCCCCChHHHHH-------------hhCCCCCcEEEccCCccCc
Q 007082 326 ANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYAISY-------------MSMMPSLKFIDISNTDIKG 389 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~L~~n~~~~ 389 (619)
+.|++|+||+|-+....+ ..+...+.+|++|.|.+|.+.-..... .+.-+.|+.+...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 456666666665544222 233345666666666666655332222 3456899999999999864
Q ss_pred chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc----ccccCCCCCCEEecCCCCCCchh----HHhhcCCCCC
Q 007082 390 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKL 461 (619)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L 461 (619)
.... ..-..|+..+.|+.+.+..|.+..... ..|..+++|++|||.+|.++... ...+..+++|
T Consensus 172 ~ga~--------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 172 GGAT--------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccHH--------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 3221 111268888999999999998864333 45678999999999999887653 3456778999
Q ss_pred CEEEcCCCccCchhhccC----C-CCCCCcEEEcCCCccCCHHHH
Q 007082 462 TNLSIRDAVLTNSGLGSF----K-PPRSLKLLDLHGGWLLTEDAI 501 (619)
Q Consensus 462 ~~L~L~~n~l~~~~~~~~----~-~~~~L~~l~l~~n~~~~~~~~ 501 (619)
++|++++|.+...+...+ . ..++|+.+.+.+|.+.-+...
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 999999999987544332 2 258999999999998665533
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=6.3e-15 Score=123.18 Aligned_cols=157 Identities=21% Similarity=0.314 Sum_probs=122.2
Q ss_pred CCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082 279 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 357 (619)
+.++.|.+++|.++.+ +.+..+.+|+.|++.+|++++ .|..+..+ ++|+.|++.-|++... |..| |.+|.|+.||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl-~klr~lnvgmnrl~~l-prgf-gs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSL-PKLRILNVGMNRLNIL-PRGF-GSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhc-hhhhheecchhhhhcC-cccc-CCCchhhhhh
Confidence 4444555555555555 456677888888888888875 44456666 8888888888887665 4444 7799999999
Q ss_pred ccCCCCCh-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 358 LSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 358 l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
+.+|++.. ..|..|..+..|+-|++++|.+.-. |. .++.+++|+.|.+.+|.+- ..|..++.+..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~------------dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PP------------DVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccC-Ch------------hhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 99988775 4566777889999999999998644 44 5889999999999999887 67889999999
Q ss_pred CCEEecCCCCCCchhHH
Q 007082 437 LIHLSLRNASLTDVSLH 453 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~ 453 (619)
|++|.+.+|.++-++|+
T Consensus 175 lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHhcccceeeecChh
Confidence 99999999999887653
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=1.1e-12 Score=125.35 Aligned_cols=149 Identities=22% Similarity=0.330 Sum_probs=105.1
Q ss_pred HHhcchhH--HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHH-HHHHhcCCCcc
Q 007082 17 ACQSGESV--QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEW-MAYLGAFRYLR 93 (619)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~-~~~~~~~~~L~ 93 (619)
+|+.|... ...++++..+...+.++...++..+.... ...++.|.+.++..+.... -.....||+++
T Consensus 98 ~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rc----------gg~lk~LSlrG~r~v~~sslrt~~~~CpnIe 167 (483)
T KOG4341|consen 98 CCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRC----------GGFLKELSLRGCRAVGDSSLRTFASNCPNIE 167 (483)
T ss_pred HHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhh----------ccccccccccccccCCcchhhHHhhhCCchh
Confidence 44444332 23334555666666555544444333321 1348999999988665444 44456799999
Q ss_pred EEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCC-CCChhHHH-HhhcCCCCCEE
Q 007082 94 SLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LLSSLQNLSVL 169 (619)
Q Consensus 94 ~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~-~~~~l~~L~~L 169 (619)
+|++.+|..+++.....++ .|++|+.|+|..|..+++.....++ .|++|++++++.+ .+++.... .+.++..++.+
T Consensus 168 hL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~ 247 (483)
T KOG4341|consen 168 HLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL 247 (483)
T ss_pred hhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh
Confidence 9999999999999888887 7999999999999899988888776 7999999999988 45554333 34467777777
Q ss_pred EcCCCC
Q 007082 170 DLGGLP 175 (619)
Q Consensus 170 ~L~~n~ 175 (619)
.+.+|.
T Consensus 248 ~~kGC~ 253 (483)
T KOG4341|consen 248 SLKGCL 253 (483)
T ss_pred hhcccc
Confidence 777653
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.8e-12 Score=123.26 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=155.9
Q ss_pred hccCCCcEEeccCCCcchhh---hhhcCCCCCEEeCcCCCCChhH-HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC
Q 007082 276 IETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351 (619)
Q Consensus 276 ~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 351 (619)
.++.+|+.+.+.++...... ....|++++.||++.|-+.... ...+....|+|+.|+++.|++....-......++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 36788999999999876663 6788999999999999887633 2334444499999999999876543333334688
Q ss_pred CCcEEEccCCCCChHHHH-HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC-cc
Q 007082 352 NLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LF 429 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 429 (619)
.|+.|.++.|.++..... ....+|+|+.|++..|........ ....+..|+.|+|++|++-+.. ..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------STKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------hhhhhhHHhhccccCCccccccccc
Confidence 999999999999865433 344899999999999963222222 3556778999999999876432 24
Q ss_pred cccCCCCCCEEecCCCCCCchhH-Hh-----hcCCCCCCEEEcCCCccCch-hhccCCCCCCCcEEEcCCCccCCHH
Q 007082 430 PLSTFKELIHLSLRNASLTDVSL-HQ-----LSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTED 499 (619)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~-~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~ 499 (619)
..+.++.|+.|+++.|.+..+.. +. ...+++|+.|+++.|++... ....+..+++|+.+.+..|++....
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 56788999999999998877632 22 34579999999999999652 1223334578888888888886543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7e-11 Score=104.00 Aligned_cols=124 Identities=28% Similarity=0.359 Sum_probs=35.2
Q ss_pred CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEcc
Q 007082 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 334 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 334 (619)
++++|++.+|.+..+.... ..+.+|+.|++++|.++.++.+..+++|++|++++|.++.........+ ++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l-p~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLG--ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL-PNLQELYLS 96 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH--TT--EEE-T
T ss_pred ccccccccccccccccchh--hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC-CcCCEEECc
Confidence 4455555555444432210 1345566666666666666666666667777777666665432211222 666666666
Q ss_pred CCCCCCchHHHHHhcCCCCcEEEccCCCCChH---HHHHhhCCCCCcEEE
Q 007082 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFID 381 (619)
Q Consensus 335 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~ 381 (619)
+|++.+..--...+.+++|+.|++.+|.++.. -...+..+|+|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66665532211123466666666666655432 122344555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.1e-11 Score=113.25 Aligned_cols=227 Identities=18% Similarity=0.185 Sum_probs=137.5
Q ss_pred HHHHHhcCCCccEEEcCCCCC------C-ChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCCh
Q 007082 82 WMAYLGAFRYLRSLNVADCRR------V-TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA 154 (619)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~------~-~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 154 (619)
+...+.-+.+|++|..+.-.. | ....+..+.-+++|+.+.++.|.. .........-|.|.++.+.+..+..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccc
Confidence 334444455677777665321 1 111111234456777777777731 1111111234677777777655443
Q ss_pred hHHHHhhcCCCCCEEEcCC-CCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC---CC
Q 007082 155 DGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP---NI 230 (619)
Q Consensus 155 ~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~---~l 230 (619)
.+. +-..+.+....-.. ....|.....+.....|+++|+++|.|+. +...+.-.|.++.|++++|++..+. .+
T Consensus 252 ~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~nLa~L 328 (490)
T KOG1259|consen 252 VPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQNLAEL 328 (490)
T ss_pred ccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeehhhhhc
Confidence 211 11111111111111 11222222222334567888888887763 3445666778888888888777544 56
Q ss_pred CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEe
Q 007082 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLD 307 (619)
Q Consensus 231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~ 307 (619)
++|+.|++++|.++.+..+-..+-++++|.+.+|.+.+... ...+-+|..||+++|++..+ ..++++|.|+++.
T Consensus 329 ~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 78888888888888776666678888888888888776654 34667888999999988777 4677889999999
Q ss_pred CcCCCCChh
Q 007082 308 LSSSMIGDD 316 (619)
Q Consensus 308 l~~n~l~~~ 316 (619)
+.+|.+...
T Consensus 406 L~~NPl~~~ 414 (490)
T KOG1259|consen 406 LTGNPLAGS 414 (490)
T ss_pred hcCCCcccc
Confidence 999987654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1e-10 Score=103.00 Aligned_cols=97 Identities=27% Similarity=0.352 Sum_probs=28.1
Q ss_pred CCCCEEecCCCCCCCC---CCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEecc
Q 007082 212 PRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287 (619)
Q Consensus 212 ~~L~~L~l~~n~l~~l---~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 287 (619)
.+|+.|++++|.++.+ +.++.|++|++++|.++.+.+.+. .+++|++|++++|++...........+++|+.|++.
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 3444444444443322 234455555555555555443332 345555555555554443332233344444444444
Q ss_pred CCCcchh-----hhhhcCCCCCEEeC
Q 007082 288 NSSLSRF-----CFLTQMKALEHLDL 308 (619)
Q Consensus 288 ~n~l~~~-----~~~~~~~~L~~L~l 308 (619)
+|++... ..+..+|+|+.||-
T Consensus 122 ~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 122 GNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcccchhhHHHHHHHHcChhheeCC
Confidence 4444322 23344455555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.5e-10 Score=105.96 Aligned_cols=131 Identities=26% Similarity=0.397 Sum_probs=91.2
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 380 (619)
..|+++|+++|.|+.. .+...-. |.++.|++++|.+..... + ..+++|+.||+++|.++... .+-..+.+++.|
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~-Pkir~L~lS~N~i~~v~n--L-a~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLA-PKLRRLILSQNRIRTVQN--L-AELPQLQLLDLSGNLLAECV-GWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhc-cceeEEeccccceeeehh--h-hhcccceEeecccchhHhhh-hhHhhhcCEeee
Confidence 4577777887777642 2233333 788888888888776544 2 34788888888888776542 223367788888
Q ss_pred EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC-CcccccCCCCCCEEecCCCCCCchh
Q 007082 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVS 451 (619)
Q Consensus 381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 451 (619)
.|++|.+.... .+..+.+|..||+++|++... -...++++|-|+.+.|.+|.+.+++
T Consensus 358 ~La~N~iE~LS--------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETLS--------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhhhh--------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88888775332 567778888888888887642 2356778888999999999888753
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.8e-10 Score=105.41 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=98.3
Q ss_pred CcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEE
Q 007082 281 LSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 281 L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L 356 (619)
|+++|+++..++.- ..++.|.+|+.|.+.++++.+.....+++. .+|+.|+++.| .++......++.+|..|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 44555554444332 344555555555555555555555555544 55555555553 34444444444555555555
Q ss_pred EccCCCCChHHHHH-hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC--CCCCCccc-cc
Q 007082 357 SLSGTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFP-LS 432 (619)
Q Consensus 357 ~l~~n~l~~~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~-~~ 432 (619)
+++.|.+....... +.+ --++|+.|+|+++. +....... ..
T Consensus 266 NlsWc~l~~~~Vtv~V~h-----------------------------------ise~l~~LNlsG~rrnl~~sh~~tL~~ 310 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAH-----------------------------------ISETLTQLNLSGYRRNLQKSHLSTLVR 310 (419)
T ss_pred CchHhhccchhhhHHHhh-----------------------------------hchhhhhhhhhhhHhhhhhhHHHHHHH
Confidence 55554433222111 110 01345555555531 11111111 23
Q ss_pred CCCCCCEEecCCC-CCCchhHHhhcCCCCCCEEEcCCCccCchhhcc---CCCCCCCcEEEcCCCccCCHHHHHHHHHhC
Q 007082 433 TFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSLKLLDLHGGWLLTEDAILQFCKMH 508 (619)
Q Consensus 433 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 508 (619)
.+++|.+|||++| .++......|-.++.|++|.++.|.. ++|+. +...|+|.+||+.|+- .+-...-+....
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v--sdt~mel~~e~~ 386 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV--SDTTMELLKEML 386 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc--CchHHHHHHHhC
Confidence 4666777777665 35554445566677777777777653 23333 3445788888888773 244555566666
Q ss_pred CCeeee
Q 007082 509 PRIEVW 514 (619)
Q Consensus 509 ~~~~~~ 514 (619)
+.+.+.
T Consensus 387 ~~lkin 392 (419)
T KOG2120|consen 387 SHLKIN 392 (419)
T ss_pred cccccc
Confidence 665554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.9e-11 Score=119.12 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=144.2
Q ss_pred CCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEE
Q 007082 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 332 (619)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 332 (619)
..-...+++.|++..++..+. .+..|+.+.+..|.+..+ ..+..+..|++++++.|++.-....... --|+.|.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~---lpLkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD---LPLKVLI 149 (722)
T ss_pred cchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc---CcceeEE
Confidence 334455666666666665432 445666677777776666 5677788899999999998765544332 5699999
Q ss_pred ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCc
Q 007082 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH 412 (619)
Q Consensus 333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~ 412 (619)
+++|+++....+ + +..+.|..||.+.|++...+ ..++++.+|+.|.+..|++....++ +..+ .
T Consensus 150 ~sNNkl~~lp~~-i-g~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~E-------------l~~L-p 212 (722)
T KOG0532|consen 150 VSNNKLTSLPEE-I-GLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEE-------------LCSL-P 212 (722)
T ss_pred EecCccccCCcc-c-ccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHH-------------HhCC-c
Confidence 999999886443 3 46789999999999988754 4578899999999999999877665 4455 4
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC---CCCCCEEEcCCCc
Q 007082 413 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS---LSKLTNLSIRDAV 470 (619)
Q Consensus 413 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~ 470 (619)
|..||++.|+++ .+|..|..+..|++|-|.+|.++.. |..+.. ..=.++|+..-++
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 899999999998 7899999999999999999999884 444332 2334677777774
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.6e-09 Score=111.85 Aligned_cols=178 Identities=29% Similarity=0.402 Sum_probs=97.9
Q ss_pred CCCcEEeccCCCcchhhhhhcCC--CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082 279 SLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 356 (619)
+.+..+++.+|.++.++...... +|+.|++++|.+.... ..+..+ ++|+.|++++|++++..... +..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNL-PNLKNLDLSFNDLSDLPKLL--SNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhcc-ccccccccCCchhhhhhhhh--hhhhhhhhe
Confidence 44555555555555443222222 5666666666655431 122222 56666666666666543322 135666666
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
++++|++....+. ......|+++.+++|+....+. .+..+.++..+.+.+|++.. .+..+..+++
T Consensus 192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~ 256 (394)
T COG4886 192 DLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLED-LPESIGNLSN 256 (394)
T ss_pred eccCCccccCchh-hhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeee-ccchhccccc
Confidence 6666666654432 2334446666666664322221 35566666666666666653 2455566666
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 477 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 477 (619)
++.|++++|.++.+.. ++...+++.|++++|.++...+.
T Consensus 257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 7777777777766543 66667777777777776655443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=2e-09 Score=116.33 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (619)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|. .+..+++|+.|+|++|++++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~------------~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------SLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh------------HHhCCCCCCEEECCCCCCCCCCchHH
Confidence 378999999999999999999999999999999999999998 79999999999999999999999999
Q ss_pred cCCCCCCEEecCCCCCCchhHHhhcCC-CCCCEEEcCCCcc
Q 007082 432 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVL 471 (619)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l 471 (619)
+.+++|+.|+|++|++++.+|..+... .++..+++.+|..
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999999999999999888763 4678899999864
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=4.1e-09 Score=108.77 Aligned_cols=157 Identities=29% Similarity=0.380 Sum_probs=106.5
Q ss_pred CCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEc
Q 007082 280 LLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (619)
Q Consensus 280 ~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 358 (619)
+|+.|++++|.+... ..+..+++|+.|++++|++.+...... .. +.|+.|++++|++....... +....|++|.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~-~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NL-SNLNNLDLSGNKISDLPPEI--ELLSALEELDL 216 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hh-hhhhheeccCCccccCchhh--hhhhhhhhhhh
Confidence 455555555555555 356677778888888777776544321 22 77888888888887765432 22455888888
Q ss_pred cCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (619)
Q Consensus 359 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (619)
++|.+... +..+..+.++..+.+.+|++... +. .++.++++++|++++|+++.... +..+.+++
T Consensus 217 ~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~------------~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~ 280 (394)
T COG4886 217 SNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE------------SIGNLSNLETLDLSNNQISSISS--LGSLTNLR 280 (394)
T ss_pred cCCcceec-chhhhhcccccccccCCceeeec-cc------------hhccccccceecccccccccccc--ccccCccC
Confidence 88853332 23466777888888888877553 22 56778889999999998875433 77888899
Q ss_pred EEecCCCCCCchhHHhhc
Q 007082 439 HLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 439 ~L~L~~n~l~~~~~~~~~ 456 (619)
.|++++|.++...+....
T Consensus 281 ~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 281 ELDLSGNSLSNALPLIAL 298 (394)
T ss_pred EEeccCccccccchhhhc
Confidence 999999988877655443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=7e-11 Score=117.38 Aligned_cols=195 Identities=20% Similarity=0.279 Sum_probs=148.1
Q ss_pred ccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcE
Q 007082 277 ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 355 (619)
.+..-...+++.|.+..+ ..+..+..|+.+.+..|.+-. .+..+..+ ..|+.++++.|+++....... .+ -|+.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L-~~lt~l~ls~NqlS~lp~~lC--~l-pLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAICNL-EALTFLDLSSNQLSHLPDGLC--DL-PLKV 147 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhhhh-hHHHHhhhccchhhcCChhhh--cC-ccee
Confidence 455566788899998887 456677788888888777653 44555555 889999999999988766543 24 4999
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435 (619)
Q Consensus 356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 435 (619)
|-+++|+++..+ ..++..+.|.+|+.+.|++....+ .+.++.+|+.|++..|++. ..|..+..++
T Consensus 148 li~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~slps-------------ql~~l~slr~l~vrRn~l~-~lp~El~~Lp 212 (722)
T KOG0532|consen 148 LIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSLPS-------------QLGYLTSLRDLNVRRNHLE-DLPEELCSLP 212 (722)
T ss_pred EEEecCccccCC-cccccchhHHHhhhhhhhhhhchH-------------HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc
Confidence 999999998754 446788999999999999876555 4888999999999999998 5577777554
Q ss_pred CCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccC--CCCCCCcEEEcCCC
Q 007082 436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF--KPPRSLKLLDLHGG 493 (619)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~l~l~~n 493 (619)
|..||++.|+++. +|..|..++.|++|.|.+|.+........ +...-.++|+..-|
T Consensus 213 -Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 -LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -eeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8999999999998 46788999999999999999986432211 11233345555555
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.5e-09 Score=78.38 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=28.0
Q ss_pred cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
+|++|++++|+++...+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444333444444444444444444444444444444444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=2.9e-10 Score=117.45 Aligned_cols=110 Identities=25% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEE
Q 007082 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 306 (619)
Q Consensus 227 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L 306 (619)
+..+.+|+.|++.+|.+..+...+..+++|+.|++++|.++.+.+. ..++.|+.|++++|.+..+..+..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheeccCcchhccCCccchhhhcc
Confidence 3445555666666666555544444555566666666555554432 2344566677777777666666666777777
Q ss_pred eCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC
Q 007082 307 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (619)
Q Consensus 307 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 340 (619)
++++|.+..........+ .+++.+++.+|.+..
T Consensus 168 ~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSEL-ISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcchhhhhhhhhhhhc-cchHHHhccCCchhc
Confidence 777776665444101222 556666666665554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2.2e-09 Score=77.50 Aligned_cols=61 Identities=30% Similarity=0.400 Sum_probs=58.1
Q ss_pred CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 435 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
++|++|++++|+++.+.+..|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999999999999999999999999999999999999999999999999975
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=3.6e-09 Score=116.69 Aligned_cols=178 Identities=20% Similarity=0.181 Sum_probs=93.5
Q ss_pred cCCCccEEEcCCCCC-CChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCC
Q 007082 88 AFRYLRSLNVADCRR-VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166 (619)
Q Consensus 88 ~~~~L~~L~L~~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 166 (619)
.+++|++|-+.++.. +.......|..++.|++|||++|..+ ...|..++++-+||+|+++++.+... |..++++..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhh
Confidence 455677777776642 33333444666777777777776433 34566667777777777777777643 5556777777
Q ss_pred CEEEcCCCCCChhHHHHhhcCCCCCEEEccCCcc--CchhhHhhcCCCCCCEEecCCCCC---CCCCCCCCCc----EEE
Q 007082 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV--SNRGAAVLKMFPRLSFLNLAWTGV---TKLPNISSLE----CLN 237 (619)
Q Consensus 167 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l---~~l~~l~~L~----~L~ 237 (619)
.+|++..+......+.....+.+|++|.+..... +...-..+.++.+|+.+....... ..+..+..|. .+.
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 7777776654333344455577777777755431 122223334444444444433322 1111111111 222
Q ss_pred cCCccccccccccCCCCCccEEeccCcccc
Q 007082 238 LSNCTIDSILEGNENKAPLAKISLAGTTFI 267 (619)
Q Consensus 238 l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 267 (619)
+.++.....+..+..+.+|+.|.+.++...
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCc
Confidence 222333344444445555555555555544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=9.3e-10 Score=113.65 Aligned_cols=242 Identities=24% Similarity=0.281 Sum_probs=156.8
Q ss_pred CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC
Q 007082 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310 (619)
Q Consensus 231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 310 (619)
..++.+.+..|.+..+...+..+.+|+.+++.+|.+..+... ...+++|++|++++|.++.+..+..++.|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhheecc
Confidence 445555566666666545566778888888888888766552 235678888888888888887777777788888888
Q ss_pred CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (619)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~ 390 (619)
|.+.... .+..+ ..|+.+++++|++....... ...+.+++.+++.+|.+.... .+..+..+..+++..|.++..
T Consensus 150 N~i~~~~--~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 150 NLISDIS--GLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred Ccchhcc--CCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceec
Confidence 8776432 22223 77888888888877765521 134777888888888766432 223334444446667766533
Q ss_pred hhccccchhhhhhHHhhccCCc--CCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082 391 IQQVGAETDLVLSLTALQNLNH--LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468 (619)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 468 (619)
-+ +..+.. |+.+++++|.+.. .+..+..+..+..|++.+|++.... .+...+.+..+....
T Consensus 224 ~~--------------l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 224 EG--------------LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLND 286 (414)
T ss_pred cC--------------cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCc
Confidence 21 122222 7888888888763 2255666778888888888877643 455566677777777
Q ss_pred CccCch---hhcc-CCCCCCCcEEEcCCCccCC
Q 007082 469 AVLTNS---GLGS-FKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 469 n~l~~~---~~~~-~~~~~~L~~l~l~~n~~~~ 497 (619)
|.+... .... ....+.+..+.+.+|+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chhcchhhhhccccccccccccccccccCcccc
Confidence 776632 1111 3345777888888887644
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=5.1e-08 Score=88.49 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=94.2
Q ss_pred hhcCCCCCcEEEccCCCCChhHHHHhh----cCCCCCEEEcCCCC---CChhHH-------HHhhcCCCCCEEEccCCcc
Q 007082 135 HLLSISTLEKLWLSETGLTADGIALLS----SLQNLSVLDLGGLP---VTDLVL-------RSLQVLTKLEYLDLWGSQV 200 (619)
Q Consensus 135 ~l~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~L~~n~---~~~~~~-------~~~~~l~~L~~L~l~~n~i 200 (619)
.+..+..++.++|++|.|.......++ +-.+|+..+++.-. ..+..+ .++..||.|+..+|+.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344566777777777777665544333 34566666665421 122222 2334566666666666665
Q ss_pred CchhhHh----hcCCCCCCEEecCCCCCCCCCCC---CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHH
Q 007082 201 SNRGAAV----LKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273 (619)
Q Consensus 201 ~~~~~~~----~~~~~~L~~L~l~~n~l~~l~~l---~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 273 (619)
....|.. ++.-+.|.+|.+++|.+..+..- ..|.+| +...-....|.|+.+....|++...+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHhhhccCCCceEEEeccchhccCcHHH
Confidence 5433322 33334444444444444322200 000000 00111224566666666666665544322
Q ss_pred h---hhccCCCcEEeccCCCcchh-------hhhhcCCCCCEEeCcCCCCChhHHHHHHhcC---CCCcEEEccCCCCCC
Q 007082 274 L---YIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS 340 (619)
Q Consensus 274 ~---~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~ 340 (619)
. +..-..|+.+.+..|.+..- ..+..+.+|+.||+..|.++-.....++... +.|++|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 1 11223555555555555322 2334455566666666555543333222111 344555555555544
Q ss_pred chHHH
Q 007082 341 AGVGI 345 (619)
Q Consensus 341 ~~~~~ 345 (619)
.+...
T Consensus 257 ~G~~~ 261 (388)
T COG5238 257 EGVKS 261 (388)
T ss_pred ccHHH
Confidence 44433
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.1e-08 Score=93.95 Aligned_cols=78 Identities=28% Similarity=0.409 Sum_probs=46.9
Q ss_pred CCEEEcCCCCCChhHH-HHh-hcCCCCCEEEccCCccCc--hhhHhhcCCCCCCEEecCCCCCCC----CC-CCCCCcEE
Q 007082 166 LSVLDLGGLPVTDLVL-RSL-QVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTGVTK----LP-NISSLECL 236 (619)
Q Consensus 166 L~~L~L~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l~~----l~-~l~~L~~L 236 (619)
++.|-+.++.|..... ..| ..++.++++||.+|.|++ .+...+.++|.|+.|+++.|.+.+ +| ...+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4455555655544322 223 346778888888888773 444556777777777777776652 33 34456666
Q ss_pred EcCCccc
Q 007082 237 NLSNCTI 243 (619)
Q Consensus 237 ~l~~~~l 243 (619)
-+.+..+
T Consensus 127 VLNgT~L 133 (418)
T KOG2982|consen 127 VLNGTGL 133 (418)
T ss_pred EEcCCCC
Confidence 6655543
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=9.1e-09 Score=113.60 Aligned_cols=288 Identities=23% Similarity=0.269 Sum_probs=142.1
Q ss_pred CCCCcEEEccCCC--CChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082 139 ISTLEKLWLSETG--LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216 (619)
Q Consensus 139 l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 216 (619)
++.|++|-+..|. +.....+.|..++.|+.|||++|.-.+..|..++++-+|++|+++++.+. ..|..+.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4456666666654 33333444566666666666666555555666666666666666666665 45556666666666
Q ss_pred EecCCCCCC-CCC----CCCCCcEEEcCCcccc---ccccccCCCCCccEEeccCccccchhHHHhhhccCCCc----EE
Q 007082 217 LNLAWTGVT-KLP----NISSLECLNLSNCTID---SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS----FL 284 (619)
Q Consensus 217 L~l~~n~l~-~l~----~l~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L 284 (619)
|++..+.-. .++ .+++|++|.+...... .....+..+.+|+.+....... .+.. .+.....|. .+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e--~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE--DLLGMTRLRSLLQSL 699 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHh--hhhhhHHHHHHhHhh
Confidence 666655321 111 3566666665443311 1112223444444444433222 0000 001111111 22
Q ss_pred eccCCCcch-hhhhhcCCCCCEEeCcCCCCChhHHHHHHh-----cCCCCcEEEccCCC-CCCchHHHHHhcCCCCcEEE
Q 007082 285 DVSNSSLSR-FCFLTQMKALEHLDLSSSMIGDDSVEMVAC-----VGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 285 ~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~ 357 (619)
.+..+.... ...+..+.+|+.|.+.++.+.+........ .++++..+...++. ..+..... -.|+|+.|.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~ 776 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLS 776 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEE
Confidence 222222222 255667788888888887765433211100 00233333333432 22222222 268899999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcc---cccC
Q 007082 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF---PLST 433 (619)
Q Consensus 358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 433 (619)
+..+.....+......+..+..+.+..+.+.+. .-. ..++++++..+.+..-.+...... ....
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~------------~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC------------SLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccceeee------------cCCCCceeEecccCccchhheehhcCccccc
Confidence 988765555444455566666666666666554 222 345555665555555333321111 1234
Q ss_pred CCCCCEEecCCC
Q 007082 434 FKELIHLSLRNA 445 (619)
Q Consensus 434 l~~L~~L~L~~n 445 (619)
+|.+..+.+.+|
T Consensus 845 ~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 845 LPLLSTLTIVGC 856 (889)
T ss_pred Cccccccceecc
Confidence 566666666665
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.65 E-value=1e-09 Score=112.20 Aligned_cols=135 Identities=22% Similarity=0.267 Sum_probs=96.0
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (619)
.|...+.+.|.+.... ..+.-++.|+.|+|++|+++..- .+..|+.|+.|||+.|.+....--..
T Consensus 165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--------------~Lr~l~~LkhLDlsyN~L~~vp~l~~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--------------NLRRLPKLKHLDLSYNCLRHVPQLSM 229 (1096)
T ss_pred hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--------------HHHhcccccccccccchhccccccch
Confidence 5666777777776533 45666788888888888876542 46778888888888888874322223
Q ss_pred cCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh-hccCCCCCCCcEEEcCCCccCCHHHHHHH
Q 007082 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTEDAILQF 504 (619)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 504 (619)
.++. |..|.+++|.++... .+.++.+|+.||+++|-+.+.. ...+..+..|+.|.+.|||+.|..+-...
T Consensus 230 ~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaa 300 (1096)
T KOG1859|consen 230 VGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAA 300 (1096)
T ss_pred hhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence 3444 889999999888743 6788899999999999887742 11223347888999999999886655443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1.1e-07 Score=86.26 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=140.7
Q ss_pred HHHhhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCC---CChhH-------HHHhhcCCCCCEEEcCC
Q 007082 108 LWALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG---LTADG-------IALLSSLQNLSVLDLGG 173 (619)
Q Consensus 108 ~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~---~~~~~-------~~~~~~l~~L~~L~L~~ 173 (619)
...+..+..+..++||+| .+......+++ +-.+|+..+++.-. ..+.. ..++.+||+|+..+|+.
T Consensus 23 ~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 23 VEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 344567889999999999 56666666665 45788888887631 22221 24667899999999999
Q ss_pred CCCChhHHH----HhhcCCCCCEEEccCCccCch----hhHh---------hcCCCCCCEEecCCCCCCCCC--------
Q 007082 174 LPVTDLVLR----SLQVLTKLEYLDLWGSQVSNR----GAAV---------LKMFPRLSFLNLAWTGVTKLP-------- 228 (619)
Q Consensus 174 n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~~----~~~~---------~~~~~~L~~L~l~~n~l~~l~-------- 228 (619)
|.+....|. .++.-..|++|.+++|.+.-. +..+ ..+-|.|+......|++...+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 987765544 446778999999999976421 1111 124466777777777665433
Q ss_pred -CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh------hhhhcCC
Q 007082 229 -NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMK 301 (619)
Q Consensus 229 -~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~ 301 (619)
...+|+++.+..|.|..- ++ ..........+.+|+.||+.+|.++.. ..+...+
T Consensus 182 ~sh~~lk~vki~qNgIrpe--gv-----------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPE--GV-----------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred HhhcCceeEEeeecCcCcc--hh-----------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 223556666665555410 00 001111222445555566665555433 2344455
Q ss_pred CCCEEeCcCCCCChhHHHHHHhc-----CCCCcEEEccCCCCCCch------HHHHHhcCCCCcEEEccCCCCCh
Q 007082 302 ALEHLDLSSSMIGDDSVEMVACV-----GANLRNLNLSNTRFSSAG------VGILAGHLPNLEILSLSGTQIDD 365 (619)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~------~~~~~~~~~~L~~L~l~~n~l~~ 365 (619)
.|+.|.+..|.++..+...+... .|+|..|...+|.+.+.. +...-+.+|-|..|.+.+|.+..
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 67778887777766555444322 266777777766543311 11122345666666666666654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=8.6e-08 Score=88.21 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChh-HHHHHHhcCCCCcEEEccCCCCCC
Q 007082 279 SLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSS 340 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~ 340 (619)
+++..+-+..|.+... .....++.+-.|+++.+++.+- ....+.++ +.|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccc
Confidence 4555555555544333 3344455555666666665542 23344444 666666666666554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.48 E-value=4.9e-07 Score=97.51 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhcc-----ChhhHHHhcCCccEEeccCCCCCChH
Q 007082 7 SELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-----FPSLLEVFKHNAEAIELRGENSVDAE 81 (619)
Q Consensus 7 ~~l~~~c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-----~p~~~~~~~~~l~~L~Ls~~~~~~~~ 81 (619)
+++.+...+.+... +..-.+.+ .-..+++.-.+.+...|...... .+.....| +++..++.+.. ....
T Consensus 3 ~sl~~~a~~~ia~~---i~ng~y~~-~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f--~ltki~l~~~~-~~~~ 75 (699)
T KOG3665|consen 3 SSLADIACQKIAEY---IQNGSYNN-LQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKF--NLTKIDLKNVT-LQHQ 75 (699)
T ss_pred CchhhhhHHHHHHH---HhcCCccc-cceecChhhhHHHHHHHHhccCCCchhHHHhhhhhh--eeEEeecccee-cchh
Confidence 45555555544443 22222222 23345556666666666543111 11112223 58888888766 4455
Q ss_pred HHHHHhcCCCccEEEcCCCCCCChHH-----------HHHhh---CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEE
Q 007082 82 WMAYLGAFRYLRSLNVADCRRVTSSA-----------LWALT---GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLW 146 (619)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~~~~~~-----------~~~l~---~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~ 146 (619)
....+.... |++|.|.+...+.... +..+. .-.+|++|+++|...+....+..++ .+|.|++|.
T Consensus 76 ~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~ 154 (699)
T KOG3665|consen 76 TLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLV 154 (699)
T ss_pred HHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEE
Confidence 555555555 8888888754222111 11111 2258999999998777777777887 589999999
Q ss_pred ccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCc-hhhHhhcCCCCCCEEecCCCCC
Q 007082 147 LSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 147 L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l 224 (619)
+.+-.+... ......++|+|..||+++++++.. ..++++++|+.|.+.+-.+.. ..-..+-++++|+.||++....
T Consensus 155 i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 155 ISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 998766443 345667899999999999998876 678899999999988866653 3334566788888888887654
Q ss_pred CCCC-----------CCCCCcEEEcCCcccc
Q 007082 225 TKLP-----------NISSLECLNLSNCTID 244 (619)
Q Consensus 225 ~~l~-----------~l~~L~~L~l~~~~l~ 244 (619)
..-+ .+|+|+.||.|+..+.
T Consensus 233 ~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 233 NDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 4211 3667777777766554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1e-08 Score=105.02 Aligned_cols=123 Identities=25% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (619)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 220 (619)
.|...+.++|.+... ..++.-++.|+.|+|++|++... +.+..|++|++|||+.|.+....--....+. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 344445555544422 23444455566666666665544 2455566666666666655432222223333 5555555
Q ss_pred CCCCCC---CCCCCCCcEEEcCCcccccccc--ccCCCCCccEEeccCcccc
Q 007082 221 WTGVTK---LPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTTFI 267 (619)
Q Consensus 221 ~n~l~~---l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~ 267 (619)
+|.++. +.++.+|+.||+++|-+....+ .+..+..|+.|.+.||.+.
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555443 3345555555555555443222 1224445555555555544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.39 E-value=6.3e-07 Score=96.67 Aligned_cols=139 Identities=19% Similarity=0.295 Sum_probs=88.8
Q ss_pred CCccEEeccCCCCCChHHHHHHhc-CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGA-FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
.+|++||++|...+...|+..++. +|.|++|.+++-....+.......++|+|+.||+|++ .+++. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 468888888877777777777765 6888888888755333333333447788888888887 44442 5566777888
Q ss_pred EEEccCCCCCh-hHHHHhhcCCCCCEEEcCCCCCChh---HH---HHhhcCCCCCEEEccCCccCchhhH
Q 007082 144 KLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDL---VL---RSLQVLTKLEYLDLWGSQVSNRGAA 206 (619)
Q Consensus 144 ~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~---~~---~~~~~l~~L~~L~l~~n~i~~~~~~ 206 (619)
.|.+.+-.+.. .....+-.+++|+.||++....... .- +.-..+|+|+.||.+++.+....-.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 87777766654 2233455778888888876542221 11 1113467778888777776654433
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=91.87 Aligned_cols=115 Identities=33% Similarity=0.412 Sum_probs=69.8
Q ss_pred HHhcCCCccEEEcCCCCCCChHHHHH-hhCCCCCCEEeCCCC-CCCChhh---HhhhcCCCCCcEEEccCCC-CChhHHH
Q 007082 85 YLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADGIA 158 (619)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~L~~~-~~l~~~~---~~~l~~l~~L~~L~L~~~~-~~~~~~~ 158 (619)
....++.|+.|.+.+|..+.+..... ...+++|+.|+++++ ....... ......+++|+.|+++.+. +++....
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 34456777777777776666554433 346777888777762 2222111 1222356777777777776 6666555
Q ss_pred Hhhc-CCCCCEEEcCCCC-CChhHHHHh-hcCCCCCEEEccCCc
Q 007082 159 LLSS-LQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQ 199 (619)
Q Consensus 159 ~~~~-l~~L~~L~L~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~ 199 (619)
.++. |++|++|.+.++. +++.....+ ..++.|++|+++++.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 5553 7777777766666 555544444 356777777777664
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=5.7e-06 Score=72.28 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=78.3
Q ss_pred CCCEEecCCCCCC---CCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccC
Q 007082 213 RLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288 (619)
Q Consensus 213 ~L~~L~l~~n~l~---~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 288 (619)
+...+++++|.+. .+|.++.|.+|.+.+|.|+.+.+.+. ..++|+.|.+.+|.+..+........|++|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 4556667777655 35667788889999999998888877 6778899999998888766666667888888888888
Q ss_pred CCcchh-----hhhhcCCCCCEEeCcCCCCCh
Q 007082 289 SSLSRF-----CFLTQMKALEHLDLSSSMIGD 315 (619)
Q Consensus 289 n~l~~~-----~~~~~~~~L~~L~l~~n~l~~ 315 (619)
|.++.. ..+..+++|+.||+.+-...+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 887665 356678888888888755443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=3e-07 Score=74.82 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=43.4
Q ss_pred CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (619)
....|+..+|++|.+....+. .-..++.++.|++++|.++ .+|..+..++.|+.|+++.|.+... |
T Consensus 51 ~~~el~~i~ls~N~fk~fp~k------------ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p 116 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKK------------FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-P 116 (177)
T ss_pred CCceEEEEecccchhhhCCHH------------Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-h
Confidence 334444445555555444333 2233345555555555555 3344455555555555555555543 2
Q ss_pred HhhcCCCCCCEEEcCCCccCch
Q 007082 453 HQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 453 ~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
..+..+.++-.|+..+|.+...
T Consensus 117 ~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred HHHHHHHhHHHhcCCCCccccC
Confidence 3333355555555555555443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=4.4e-07 Score=73.84 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=42.0
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (619)
.|...++++|.+...++..-..++.++.|++++|.++.. |. .+..++.|+.|+++.|.+. ..|..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-Pe------------E~Aam~aLr~lNl~~N~l~-~~p~vi 119 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PE------------ELAAMPALRSLNLRFNPLN-AEPRVI 119 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hH------------HHhhhHHhhhcccccCccc-cchHHH
Confidence 344445555555444443333444555555555555432 22 2445555555555555554 334444
Q ss_pred cCCCCCCEEecCCCCCCchhHH
Q 007082 432 STFKELIHLSLRNASLTDVSLH 453 (619)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~ 453 (619)
..+.++-.|+..+|.+..+..+
T Consensus 120 ~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCccccCcHH
Confidence 4455555555555555444333
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=4.5e-06 Score=72.92 Aligned_cols=107 Identities=22% Similarity=0.350 Sum_probs=81.2
Q ss_pred cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH-HHHHhcCCCCcEE
Q 007082 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV-GILAGHLPNLEIL 356 (619)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L 356 (619)
......+|+++|.+.....|..++.|.+|.+++|.|+...+..-... ++|+.|.+.+|.+...+- ..+ ..||+|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPL-ASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchh-ccCCcccee
Confidence 45677889999999988999999999999999999988766544444 899999999998765322 223 458899999
Q ss_pred EccCCCCChHHH---HHhhCCCCCcEEEccCCc
Q 007082 357 SLSGTQIDDYAI---SYMSMMPSLKFIDISNTD 386 (619)
Q Consensus 357 ~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~ 386 (619)
.+-+|.++.... ..+..+|+|+.||+.+-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999988776432 234467888888876543
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=9.2e-06 Score=86.55 Aligned_cols=89 Identities=28% Similarity=0.370 Sum_probs=61.3
Q ss_pred hhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccCCC-CCCchHHHHHhcCCCCcEEEccCCCCC-hH-HHHHh
Q 007082 296 FLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQID-DY-AISYM 371 (619)
Q Consensus 296 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~~ 371 (619)
....+++|+.++++++. +++.....+...|++|+.|.+.+|. +++.+...+...++.|++|++++|... +. .....
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 34556778888888766 7777777777766888888877776 777777777777888888888876542 22 22223
Q ss_pred hCCCCCcEEEccC
Q 007082 372 SMMPSLKFIDISN 384 (619)
Q Consensus 372 ~~~~~L~~L~L~~ 384 (619)
.++++|+.|.+..
T Consensus 318 ~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 318 KNCPNLRELKLLS 330 (482)
T ss_pred HhCcchhhhhhhh
Confidence 4567766655443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.8e-05 Score=52.09 Aligned_cols=38 Identities=32% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 435 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
++|++|++++|+++.+.+ .++++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 356667777776666433 46667777777777776664
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2.1e-05 Score=51.79 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=20.1
Q ss_pred cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (619)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (619)
+|++|++++|++++ +|..++.+++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 45566666666652 34445566666666666666554
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00029 Score=70.27 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=77.0
Q ss_pred ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcE
Q 007082 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI 355 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~ 355 (619)
.+..++.|++++|.++.++. -..+|++|.+++|.--...+..+. ++|+.|++++| .+... .++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sL--------P~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGL--------PESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccccc--------ccccce
Confidence 46778888888887777652 334688888877432222333332 67888888877 44321 346777
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435 (619)
Q Consensus 356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 435 (619)
|++.++...... .-.++|+.|.+.+++....... .-.--++|++|++++|... ..|..+ ..
T Consensus 117 L~L~~n~~~~L~----~LPssLk~L~I~~~n~~~~~~l------------p~~LPsSLk~L~Is~c~~i-~LP~~L--P~ 177 (426)
T PRK15386 117 LEIKGSATDSIK----NVPNGLTSLSINSYNPENQARI------------DNLISPSLKTLSLTGCSNI-ILPEKL--PE 177 (426)
T ss_pred EEeCCCCCcccc----cCcchHhheecccccccccccc------------ccccCCcccEEEecCCCcc-cCcccc--cc
Confidence 777765543211 1124566777644321100000 0000147888888887654 233333 25
Q ss_pred CCCEEecCCCC
Q 007082 436 ELIHLSLRNAS 446 (619)
Q Consensus 436 ~L~~L~L~~n~ 446 (619)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 78888877663
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00035 Score=69.76 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=6.8
Q ss_pred CCCCCCEEeCCCC
Q 007082 113 GMTCLKELDLSRC 125 (619)
Q Consensus 113 ~~~~L~~L~L~~~ 125 (619)
.|.+++.|++++|
T Consensus 50 ~~~~l~~L~Is~c 62 (426)
T PRK15386 50 EARASGRLYIKDC 62 (426)
T ss_pred HhcCCCEEEeCCC
Confidence 3455555555555
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.52 E-value=7.3e-05 Score=63.47 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred HhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCC
Q 007082 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN 165 (619)
Q Consensus 86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 165 (619)
|.++++|+.+.+.. . +......+|.++++|+.+.+..+ +.......|.+++.|+.+.+.+ .+.......|..+++
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 55666777777764 2 44444455667777777777663 4444455566676777777754 444444456666777
Q ss_pred CCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC
Q 007082 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214 (619)
Q Consensus 166 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 214 (619)
|+.+++..+ +..+....|.++ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777777654 555555566666 777777654 3444555566666555
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=6.2e-05 Score=66.04 Aligned_cols=84 Identities=31% Similarity=0.528 Sum_probs=71.7
Q ss_pred CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCCCCEEeCCCCCCCChhhHhhhcCCCCCcE
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 144 (619)
.++.+|-+++. +..+-.+.+.+++.++.|.+.+|+.+.+..+..+++ .++|+.|++++|..+++.+...+..+++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 48888888877 777788888899999999999999888888888875 4799999999999999999888888899988
Q ss_pred EEccCC
Q 007082 145 LWLSET 150 (619)
Q Consensus 145 L~L~~~ 150 (619)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 888764
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00013 Score=61.95 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=46.4
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (619)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (619)
..+++|+.+.+.. .+.......|.++++|+.+.+.++ +...... .|.++++|+.+.+.+ .+....
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~------------~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN------------AFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT------------TTTT-TT-EEEEETS-TT-EE-
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee------------eeecccccccccccc-cccccc
Confidence 3455566666553 344444445555656666666553 3333222 455665566666654 332233
Q ss_pred cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (619)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (619)
...|..+++|+.+++..+ ++.+....|.++ .|+.+.+.. .+.......|..+++
T Consensus 74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 344555666666666544 444444555555 566666554 333333334444433
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.42 E-value=1.7e-05 Score=81.99 Aligned_cols=41 Identities=34% Similarity=0.408 Sum_probs=18.9
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhc---CCCCcEEEccCCCCCCc
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSA 341 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~ 341 (619)
..++.++++.|.+++.....+... ++.++.+.+++|.+.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 344555555555554433332211 13455555555555543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=7.2e-05 Score=68.52 Aligned_cols=102 Identities=26% Similarity=0.414 Sum_probs=52.8
Q ss_pred CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCC--ccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCC-C
Q 007082 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT--DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-A 426 (619)
Q Consensus 350 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 426 (619)
+..|+.|.+.+..++.. ..+..+++|+.|.++.| .+.+-++. -...+++|++|++++|++.. .
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v------------l~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV------------LAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee------------hhhhCCceeEEeecCCcccccc
Confidence 44555555555555433 23445666777777777 33333322 23445677777777776653 1
Q ss_pred CcccccCCCCCCEEecCCCCCCch---hHHhhcCCCCCCEEE
Q 007082 427 TLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLS 465 (619)
Q Consensus 427 ~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~ 465 (619)
....+..+.+|..|++.+|..+.. -...|.-+++|++||
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 112233455666666666654332 223445556665554
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.0001 Score=67.52 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC--CCChhHHHHHHhcCCCCcEEEccCCCCC
Q 007082 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFS 339 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 339 (619)
..|+.+++.+..++.+..+..+++|+.|.++.| ++.+... .+...+|+|+++++++|++.
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccc
Confidence 445555555555555555555666666666666 3322221 12222255555555555544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=8.8e-05 Score=68.20 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=42.1
Q ss_pred CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEc
Q 007082 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNL 333 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L 333 (619)
+.++|++.||.+.++.- ...++.|+.|.|+-|.++.+..+..|++|++|+|..|.|.+..- ..+..+ ++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHhh
Confidence 34444444544444332 12445555666666666555555666666666666665554322 223333 56666666
Q ss_pred cCCCCCC
Q 007082 334 SNTRFSS 340 (619)
Q Consensus 334 ~~n~l~~ 340 (619)
..|...+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 5555444
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=7.3e-05 Score=68.70 Aligned_cols=101 Identities=23% Similarity=0.216 Sum_probs=72.0
Q ss_pred cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 357 (619)
+.+.+.|++.+|.+..+.....++.|+.|.|+-|.|+... .+..+ .+|++|.|..|.|.+..--.+..++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rC-trLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRC-TRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHH-HHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4567778888888888888888888888888888887543 33443 78888888888887765555557788888888
Q ss_pred ccCCCCChHHH-----HHhhCCCCCcEEE
Q 007082 358 LSGTQIDDYAI-----SYMSMMPSLKFID 381 (619)
Q Consensus 358 l~~n~l~~~~~-----~~~~~~~~L~~L~ 381 (619)
|..|.-.+..+ ..+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 88876443322 2345677777765
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.08 E-value=6e-05 Score=78.05 Aligned_cols=108 Identities=31% Similarity=0.372 Sum_probs=48.5
Q ss_pred ccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhcC----C-CCCcEEEccCCCCChhHH----H
Q 007082 92 LRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLLS----I-STLEKLWLSETGLTADGI----A 158 (619)
Q Consensus 92 L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~~----l-~~L~~L~L~~~~~~~~~~----~ 158 (619)
+..|.|.+|. +.+..... +...+.|+.|++++| .+.+.....+++ . ..|+.|++..|.++.... +
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 4555555554 33333332 234455666666665 334444333331 1 334445555555443322 2
Q ss_pred HhhcCCCCCEEEcCCCCCChh----HHHHhh----cCCCCCEEEccCCccC
Q 007082 159 LLSSLQNLSVLDLGGLPVTDL----VLRSLQ----VLTKLEYLDLWGSQVS 201 (619)
Q Consensus 159 ~~~~l~~L~~L~L~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~i~ 201 (619)
.+.....++.++++.|.+... .+..+. ...++++|++.++.++
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 333445555555555554211 111222 2445555555555544
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.0018 Score=57.08 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=59.7
Q ss_pred CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcC-CCCCcEEEccCC-CCChhHHHHhhcCCCCCE
Q 007082 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSET-GLTADGIALLSSLQNLSV 168 (619)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~ 168 (619)
.++.++-+++. |...++..+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++| .|++.....+..+++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 46667777765 777777777888888888888887777777776664 577777777776 577666666677777777
Q ss_pred EEcCC
Q 007082 169 LDLGG 173 (619)
Q Consensus 169 L~L~~ 173 (619)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 76654
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.19 E-value=0.003 Score=76.14 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred EcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeee--ecccccccCCCCC
Q 007082 465 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV--WHELSVICPSDQI 526 (619)
Q Consensus 465 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 526 (619)
||++|+|+.+.+..|..+++|+.|+|++|||.|+|.+.||.+|+..-.+ .......|..|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~ 64 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGA 64 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChH
Confidence 5889999988888888899999999999999999999999999755432 2233455666553
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.77 E-value=0.078 Score=30.17 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=10.2
Q ss_pred CCccEEEcCCCCCCChHHHHHh
Q 007082 90 RYLRSLNVADCRRVTSSALWAL 111 (619)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l 111 (619)
++|++|+|++|..+++..+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444433
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.042 Score=29.84 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=7.2
Q ss_pred CCEEEcCCCccC
Q 007082 461 LTNLSIRDAVLT 472 (619)
Q Consensus 461 L~~L~L~~n~l~ 472 (619)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 555666666655
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.66 E-value=0.028 Score=30.53 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.2
Q ss_pred EEccCC
Q 007082 416 LNLEQT 421 (619)
Q Consensus 416 L~L~~n 421 (619)
|+|++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.60 E-value=0.077 Score=30.18 Aligned_cols=24 Identities=46% Similarity=0.793 Sum_probs=19.8
Q ss_pred CCCCCEEeCCCCCCCChhhHhhhc
Q 007082 114 MTCLKELDLSRCVKVTDAGMKHLL 137 (619)
Q Consensus 114 ~~~L~~L~L~~~~~l~~~~~~~l~ 137 (619)
|++|++|+|++|..+++.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578999999999888888877664
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.62 E-value=0.12 Score=26.00 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=4.0
Q ss_pred CcEEEcCCcccc
Q 007082 233 LECLNLSNCTID 244 (619)
Q Consensus 233 L~~L~l~~~~l~ 244 (619)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.07 E-value=0.29 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=8.9
Q ss_pred CCCEEecCCCCCCchhHHh
Q 007082 436 ELIHLSLRNASLTDVSLHQ 454 (619)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~ 454 (619)
+|+.|+|++|+++.+++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4445555555544444333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.07 E-value=0.29 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=8.9
Q ss_pred CCCEEecCCCCCCchhHHh
Q 007082 436 ELIHLSLRNASLTDVSLHQ 454 (619)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~ 454 (619)
+|+.|+|++|+++.+++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4445555555544444333
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.76 E-value=0.26 Score=27.32 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.9
Q ss_pred CCCCEEeCcCCCCChhHHHHH
Q 007082 301 KALEHLDLSSSMIGDDSVEMV 321 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~ 321 (619)
++|++|++++|.+++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555544443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.72 E-value=0.31 Score=27.57 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=12.9
Q ss_pred CCCcEEEcCCccccccccccC
Q 007082 231 SSLECLNLSNCTIDSILEGNE 251 (619)
Q Consensus 231 ~~L~~L~l~~~~l~~l~~~~~ 251 (619)
++|+.|++++|.+..+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.72 E-value=0.31 Score=27.57 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=12.9
Q ss_pred CCCcEEEcCCccccccccccC
Q 007082 231 SSLECLNLSNCTIDSILEGNE 251 (619)
Q Consensus 231 ~~L~~L~l~~~~l~~l~~~~~ 251 (619)
++|+.|++++|.+..+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665543
No 86
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=88.39 E-value=0.15 Score=39.98 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=15.2
Q ss_pred Cccccccceeecccccccccccceeecccc
Q 007082 553 SHSFLGGVLLFSMRYSFKCIHLTFFVCFSK 582 (619)
Q Consensus 553 ~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~ 582 (619)
....|+|+++++++++++++.+++||+++|
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence 334477777776655544333223443333
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.19 E-value=0.32 Score=26.89 Aligned_cols=17 Identities=59% Similarity=0.769 Sum_probs=6.6
Q ss_pred CCCcEEEccCCCCChHH
Q 007082 351 PNLEILSLSGTQIDDYA 367 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~ 367 (619)
++|++|++++|.+++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34444444444444433
No 88
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.62 E-value=0.17 Score=42.57 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=12.3
Q ss_pred cccccceeeccccccccccc
Q 007082 555 SFLGGVLLFSMRYSFKCIHL 574 (619)
Q Consensus 555 ~~i~~v~~~~~~~~~~~~~~ 574 (619)
..++|++||+.+.+++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred cEEEEEEecccHHHHHHHHH
Confidence 34788888876655544443
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.84 E-value=0.017 Score=52.25 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=31.9
Q ss_pred hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
|+-++.|..|+++.|++. ..|..+.+...+..+++.+|..+. .|..+...++++++++.+|.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccCcch
Confidence 333444555555555544 344555555555555555554444 2344555555555555555543
No 90
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=82.35 E-value=0.41 Score=49.25 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred cccceeecccccccccccceeecccccchhhccC-HHHHHHhhhccccccC
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYS-REELLELQYSSLSLAR 606 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~ 606 (619)
++++++++++++++++++ +++|++++++|+++. +.+...-.|..+....
T Consensus 354 ~l~vVlgvavlivVv~vi-v~vc~~~rrrR~~~~~~~~~~~~~YtsLPtNE 403 (439)
T PF02480_consen 354 LLGVVLGVAVLIVVVGVI-VWVCLRCRRRRRQRDKILNPFSPVYTSLPTNE 403 (439)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHH-hheeeeehhcccccccccCcCCCccccCCCCC
Confidence 344444444333333332 556666666665555 3333333333334433
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.89 E-value=0.13 Score=41.97 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=15.7
Q ss_pred cccceeecccccccccccceeecccccchh
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQR 586 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r 586 (619)
|++|++|+++.++.++++ ++||++|+++|
T Consensus 66 i~~Ii~gv~aGvIg~Ill-i~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILL-ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 677777777655554443 45555444443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.41 E-value=2.8 Score=24.22 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=14.0
Q ss_pred CCCCEEeCcCCCCChhHHHHHH
Q 007082 301 KALEHLDLSSSMIGDDSVEMVA 322 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~ 322 (619)
++|++|+|++|.+++.+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4566777777777666655544
No 93
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=80.01 E-value=0.53 Score=31.92 Aligned_cols=18 Identities=0% Similarity=-0.060 Sum_probs=16.1
Q ss_pred CccCCHHHHHHHHHhCCC
Q 007082 493 GWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 493 n~~~~~~~~~~~~~~~~~ 510 (619)
|||.|+|.+.++..|...
T Consensus 1 NP~~CdC~l~~~~~w~~~ 18 (51)
T smart00082 1 NPFICDCELRWLLRWLQA 18 (51)
T ss_pred CCccCcCCchHHHHHHHh
Confidence 899999999999988765
No 94
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=78.42 E-value=0.68 Score=32.50 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=0.0
Q ss_pred cccceeeccc
Q 007082 557 LGGVLLFSMR 566 (619)
Q Consensus 557 i~~v~~~~~~ 566 (619)
++++++++++
T Consensus 11 laavIaG~Vv 20 (64)
T PF01034_consen 11 LAAVIAGGVV 20 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.14 E-value=3.4 Score=42.90 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCcEEEccCCCCCC-chHHHHHhcCCCCcEEEccCC--CCChHHHHHhh--CCCCCcEEEccCCccCc
Q 007082 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGT--QIDDYAISYMS--MMPSLKFIDISNTDIKG 389 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~--~~~~L~~L~L~~n~~~~ 389 (619)
+.+..++|++|++.. .....+....|+|+.|+|++| .+.... .+. ....|++|.+.+|++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~--el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES--ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh--hhhhhcCCCHHHeeecCCcccc
Confidence 555556666665544 123334445566666666666 222211 111 33456666666666643
No 96
>PHA03265 envelope glycoprotein D; Provisional
Probab=73.97 E-value=1.2 Score=42.86 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=22.6
Q ss_pred cccccceeecccccccccccceeecccccchhhcc
Q 007082 555 SFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKY 589 (619)
Q Consensus 555 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 589 (619)
+...|+++|..++.++++.+++++|.||+|..+|.
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~ 381 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLRRKKELKKS 381 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhhhhhhhhhh
Confidence 33567777777766666666677777776654433
No 97
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=72.94 E-value=1.2 Score=31.34 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=0.0
Q ss_pred ccccccceeecccccccccc
Q 007082 554 HSFLGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 554 ~~~i~~v~~~~~~~~~~~~~ 573 (619)
...|+|++++++.+++++++
T Consensus 12 aavIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILF 31 (64)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44578888888877777666
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.52 E-value=3.9 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=7.0
Q ss_pred CCCEEecCCCCCCCC
Q 007082 213 RLSFLNLAWTGVTKL 227 (619)
Q Consensus 213 ~L~~L~l~~n~l~~l 227 (619)
+|+.|+++.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 444444544444433
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.91 E-value=33 Score=35.27 Aligned_cols=108 Identities=23% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhh---cCCCCCEEEcCCCCCChhHHHHhh---cC
Q 007082 114 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS---SLQNLSVLDLGGLPVTDLVLRSLQ---VL 187 (619)
Q Consensus 114 ~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~~~~~---~l 187 (619)
-+.+++++++.| .+.+..+..+..-.. -+.++.|+.++.....+. .-..+.+++++.|...+.++..+. .-
T Consensus 164 npr~r~~dls~n-pi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 164 NPRARQHDLSPN-PIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred cchhhhhccCCC-cccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 346677777777 333333333331100 055555655544332221 112467777777766555544332 22
Q ss_pred CCCCEEEccCCccCc---hhhHhhcCCCCCCEEecCCCCC
Q 007082 188 TKLEYLDLWGSQVSN---RGAAVLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 188 ~~L~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l 224 (619)
..++.++.+...+.- ..+-.+...++++..+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 356666666654431 1122334445666666666544
No 100
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=70.49 E-value=0.3 Score=30.07 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=5.0
Q ss_pred eeecccccchh
Q 007082 576 FFVCFSKTDQR 586 (619)
Q Consensus 576 ~~~~~~~~~~r 586 (619)
++.|.+|+.++
T Consensus 25 ~YaCcykk~~~ 35 (38)
T PF02439_consen 25 YYACCYKKHRR 35 (38)
T ss_pred HHHHHHccccc
Confidence 34455554443
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.19 E-value=4.6 Score=41.94 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCC--CCChhHHHHhh--cCCCCCEEEcCCCCCChhHH------
Q 007082 113 GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET--GLTADGIALLS--SLQNLSVLDLGGLPVTDLVL------ 181 (619)
Q Consensus 113 ~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~--~~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~------ 181 (619)
+.+.+..++|++|....-+....+. ..|+|+.|+|++| .+... ..+. +...|++|-+.+|.+.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 5677777777777433333344444 4678888888877 33322 1222 22357888888887654321
Q ss_pred HHh-hcCCCCCEEE
Q 007082 182 RSL-QVLTKLEYLD 194 (619)
Q Consensus 182 ~~~-~~l~~L~~L~ 194 (619)
.++ ...|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 111 2467776664
No 102
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.23 E-value=0.17 Score=46.03 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=64.6
Q ss_pred cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428 (619)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 428 (619)
.+...+.||++.|++-... ..|+-++.|..|+++.|++. ..|. .++....++.+++..|..+ ..|
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~------------d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPK------------DAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChh------------hHHHHHHHHHHHhhccchh-hCC
Confidence 3667788888887765433 23556677888888888874 3444 5677777788888888776 668
Q ss_pred ccccCCCCCCEEecCCCCCCchh
Q 007082 429 FPLSTFKELIHLSLRNASLTDVS 451 (619)
Q Consensus 429 ~~~~~l~~L~~L~L~~n~l~~~~ 451 (619)
.++...+.++++++..|.++...
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred ccccccCCcchhhhccCcchHHH
Confidence 88899999999999988866543
No 103
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.14 E-value=17 Score=37.12 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=80.1
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcC-----CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH-
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVG-----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY- 370 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~- 370 (619)
++.-+++ +|++.++....+.+..+.-.. ..=-.+++..|...+.....-...-..+++|.+.+|.+.+..-..
T Consensus 296 fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg 374 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG 374 (553)
T ss_pred cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc
Confidence 3444556 677766665554444332110 111234555555544222211112235788888887776654332
Q ss_pred -hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc---ccccCCCCCCEEecCCCC
Q 007082 371 -MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL---FPLSTFKELIHLSLRNAS 446 (619)
Q Consensus 371 -~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 446 (619)
...-+..+.+++..-.-...... + ........ .-....-+..+.++.|.+....- .....-+.+..|++++|.
T Consensus 375 k~~~s~s~r~l~agrs~~kqvm~s-~-~~a~~v~k-~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 375 KRKQSKSGRILKAGRSGDKQVMDS-S-TEAPPVSK-KSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG 451 (553)
T ss_pred ceeeccccccccccccCCceeccc-c-ccchhhhh-hhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCC
Confidence 22345666666654322111000 0 00000000 01112235667777776653221 223344678888888886
Q ss_pred CCch----hHHhhcCCCCCCEEEcCCCccC
Q 007082 447 LTDV----SLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 447 l~~~----~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
.... +|.....-.+++.+..+.|...
T Consensus 452 mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 452 MGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 5443 2333444456666666666554
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.17 E-value=3.7 Score=23.22 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=10.6
Q ss_pred CCcEEEcCCcccccccc
Q 007082 232 SLECLNLSNCTIDSILE 248 (619)
Q Consensus 232 ~L~~L~l~~~~l~~l~~ 248 (619)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 105
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=65.38 E-value=0.79 Score=38.57 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=3.7
Q ss_pred ecccccchh
Q 007082 578 VCFSKTDQR 586 (619)
Q Consensus 578 ~~~~~~~~r 586 (619)
+|+.|||+|
T Consensus 20 ~~~~rRR~r 28 (130)
T PF12273_consen 20 YCHNRRRRR 28 (130)
T ss_pred HHHHHHHhh
Confidence 344444433
No 106
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=59.62 E-value=3 Score=35.63 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=0.0
Q ss_pred cccccceeecccccccccccceeecccccc
Q 007082 555 SFLGGVLLFSMRYSFKCIHLTFFVCFSKTD 584 (619)
Q Consensus 555 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (619)
..++||++++++.++++..+ +++++||..
T Consensus 129 ~tLVGIIVGVLlaIG~igGI-IivvvRKmS 157 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGI-IIVVVRKMS 157 (162)
T ss_dssp ------------------------------
T ss_pred eeeeeehhhHHHHHHHHhhe-eeEEeehhc
Confidence 33788888888877776664 445555443
No 107
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=58.83 E-value=0.96 Score=33.62 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=3.2
Q ss_pred eeecccccchhh
Q 007082 576 FFVCFSKTDQRL 587 (619)
Q Consensus 576 ~~~~~~~~~~r~ 587 (619)
+++|.+|.+.++
T Consensus 20 ~~~~~rr~~~~~ 31 (75)
T PF14575_consen 20 VIVCFRRCKYSK 31 (75)
T ss_dssp HHCCCTT-----
T ss_pred EEEEEeeEcCCC
Confidence 344444444333
No 108
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=58.77 E-value=2.8 Score=42.86 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=18.8
Q ss_pred CCCccccccceeecccccccccccceeecccc
Q 007082 551 PMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSK 582 (619)
Q Consensus 551 ~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~ 582 (619)
..+.+.|+||.|++|+|++.++.++.||++-|
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 34455588888887766665444434444333
No 109
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.28 E-value=1 Score=34.71 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=20.7
Q ss_pred cccceeecccccccccccceeecccccchhhccCHHHH
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREEL 594 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 594 (619)
++||+++++++.+++++ .+-|-..|+.+..|...++
T Consensus 20 LVGVv~~al~~SlLIal--aaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 20 LVGVVVTALVTSLLIAL--AAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhHHHHHHHhccccccC
Confidence 67777777766666655 4455555555555544433
No 110
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=55.15 E-value=2.7 Score=37.67 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=11.4
Q ss_pred cccceeeccccccccccc
Q 007082 557 LGGVLLFSMRYSFKCIHL 574 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~ 574 (619)
++||+.|++.|+++++++
T Consensus 40 ~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 40 MIAIVAGIMTVILVIFIV 57 (221)
T ss_pred eeeeecchhhhHHHHHHH
Confidence 566666666666665553
No 111
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=49.59 E-value=3 Score=41.08 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=16.3
Q ss_pred cccceeecccccccccccceeecccccchhhccC
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYS 590 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 590 (619)
++-|+||+++++++++++ +.+++.|||.+..|.
T Consensus 272 ~vPIaVG~~La~lvlivL-iaYli~Rrr~~~gYq 304 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVL-IAYLIGRRRSRAGYQ 304 (306)
T ss_pred hHHHHHHHHHHHHHHHHH-HhheeEecccccccc
Confidence 455656655554444443 334444444444554
No 112
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.01 E-value=2.3 Score=39.90 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=5.3
Q ss_pred eeecccccchhhc
Q 007082 576 FFVCFSKTDQRLK 588 (619)
Q Consensus 576 ~~~~~~~~~~r~~ 588 (619)
++|..|||+..||
T Consensus 279 YiWlyrrRK~swk 291 (295)
T TIGR01478 279 YIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHhhccccc
Confidence 3344444444443
No 113
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=42.62 E-value=8.6 Score=30.55 Aligned_cols=26 Identities=8% Similarity=0.232 Sum_probs=1.6
Q ss_pred cccceeecccccccccccceeeccccc
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKT 583 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~ 583 (619)
.+||.+.+++++++.++ +.|+|.||.
T Consensus 26 AaGIGiL~VILgiLLli-GCWYckRRS 51 (118)
T PF14991_consen 26 AAGIGILIVILGILLLI-GCWYCKRRS 51 (118)
T ss_dssp --SSS----------------------
T ss_pred hccceeHHHHHHHHHHH-hheeeeecc
Confidence 34555544444443333 255555443
No 114
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=41.87 E-value=23 Score=32.08 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=19.7
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 340 (619)
.+++.-|+++.-+...........|.+++--.|.+|++.+
T Consensus 171 a~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 171 AKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFED 210 (302)
T ss_pred hhhcccccccchhhhhhhhhhhheecccccccccCcCCCC
Confidence 4455555555444333334444444555555555555554
No 115
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=40.99 E-value=9.3 Score=31.09 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=0.0
Q ss_pred ecccccchhhccCH
Q 007082 578 VCFSKTDQRLKYSR 591 (619)
Q Consensus 578 ~~~~~~~~r~~~~~ 591 (619)
++.||.++|.|+..
T Consensus 99 lv~rrcrrr~~~tt 112 (129)
T PF12191_consen 99 LVWRRCRRREKFTT 112 (129)
T ss_dssp --------------
T ss_pred HHHhhhhccccCCC
Confidence 44445555555544
No 116
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=37.90 E-value=13 Score=28.44 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=3.8
Q ss_pred eeecccccc
Q 007082 576 FFVCFSKTD 584 (619)
Q Consensus 576 ~~~~~~~~~ 584 (619)
+++|++.++
T Consensus 60 Lv~CC~~K~ 68 (98)
T PF07204_consen 60 LVCCCRAKH 68 (98)
T ss_pred HHHHhhhhh
Confidence 344444333
No 117
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=35.87 E-value=7.2 Score=35.16 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=6.3
Q ss_pred eeecccccchhhc
Q 007082 576 FFVCFSKTDQRLK 588 (619)
Q Consensus 576 ~~~~~~~~~~r~~ 588 (619)
.|+|+.||.++.+
T Consensus 121 ~Y~~~~Rrs~~~~ 133 (202)
T PF06365_consen 121 GYCCHQRRSWSKK 133 (202)
T ss_pred HHHhhhhccCCcc
Confidence 4455555554443
No 118
>PF15102 TMEM154: TMEM154 protein family
Probab=30.83 E-value=7.7 Score=32.70 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.3
Q ss_pred ceeecc
Q 007082 560 VLLFSM 565 (619)
Q Consensus 560 v~~~~~ 565 (619)
+++.++
T Consensus 58 iLmIlI 63 (146)
T PF15102_consen 58 ILMILI 63 (146)
T ss_pred EEEEeH
Confidence 333333
No 119
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.76 E-value=35 Score=43.26 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=27.4
Q ss_pred EccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082 417 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (619)
Q Consensus 417 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (619)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899987777888888999999999887654
No 120
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.04 E-value=12 Score=33.41 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=10.1
Q ss_pred ccccceeecccccccccc
Q 007082 556 FLGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 556 ~i~~v~~~~~~~~~~~~~ 573 (619)
.++||+++|++++++|++
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 467777766655443333
No 121
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.70 E-value=7.6 Score=32.63 Aligned_cols=12 Identities=17% Similarity=0.215 Sum_probs=5.0
Q ss_pred ecccccchhhcc
Q 007082 578 VCFSKTDQRLKY 589 (619)
Q Consensus 578 ~~~~~~~~r~~~ 589 (619)
+.+.++.+|++.
T Consensus 17 ~~~~~~~rRR~r 28 (130)
T PF12273_consen 17 FLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHhh
Confidence 444444444333
No 122
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=28.08 E-value=7 Score=28.91 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=16.2
Q ss_pred cccceeecccccccccccceeecccccch
Q 007082 557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQ 585 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (619)
++|++++=+++.++++++ +|+|.+.+++
T Consensus 36 LaGiV~~D~vlTLLIv~~-vy~car~r~r 63 (79)
T PF07213_consen 36 LAGIVAADAVLTLLIVLV-VYYCARPRRR 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhcccccC
Confidence 666666666655555553 5666554443
No 123
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.07 E-value=5.9 Score=29.69 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=8.7
Q ss_pred cccccccccccceeecccccc
Q 007082 564 SMRYSFKCIHLTFFVCFSKTD 584 (619)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~ 584 (619)
++..++++++..+++|+.+|+
T Consensus 39 vI~~iFil~VilwfvCC~kRk 59 (94)
T PF05393_consen 39 VICGIFILLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333333332555554443
No 124
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=27.55 E-value=20 Score=35.40 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=0.0
Q ss_pred cccceeecccccccccc
Q 007082 557 LGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 557 i~~v~~~~~~~~~~~~~ 573 (619)
|.||++++++|.++|++
T Consensus 12 ITgIcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 12 ITGICVALLVVGIVCVV 28 (404)
T ss_dssp -----------------
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 77777777776666555
No 125
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=27.43 E-value=8.3 Score=33.17 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=14.5
Q ss_pred ecccccchhhccCHHHHHHhhhc
Q 007082 578 VCFSKTDQRLKYSREELLELQYS 600 (619)
Q Consensus 578 ~~~~~~~~r~~~~~~~~~~~~~~ 600 (619)
+..+|+.++.+|.|+-+.+++.-
T Consensus 39 ~~~~r~~~~~~yrr~Al~~L~~l 61 (146)
T PF14316_consen 39 WRLWRRWRRNRYRREALRELAQL 61 (146)
T ss_pred HHHHHHHHccHHHHHHHHHHHHc
Confidence 44455555567888877776653
No 126
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.19 E-value=7.8 Score=37.59 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.3
Q ss_pred ccccch
Q 007082 580 FSKTDQ 585 (619)
Q Consensus 580 ~~~~~~ 585 (619)
..||||
T Consensus 278 ILRYRR 283 (299)
T PF02009_consen 278 ILRYRR 283 (299)
T ss_pred HHHHHH
Confidence 333443
No 127
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.82 E-value=6.1 Score=29.55 Aligned_cols=6 Identities=0% Similarity=0.318 Sum_probs=0.7
Q ss_pred eccccc
Q 007082 578 VCFSKT 583 (619)
Q Consensus 578 ~~~~~~ 583 (619)
++++.|
T Consensus 25 iv~ieY 30 (81)
T PF00558_consen 25 IVYIEY 30 (81)
T ss_dssp HH----
T ss_pred HHHHHH
Confidence 333333
No 128
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=25.28 E-value=13 Score=31.05 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=10.3
Q ss_pred ccccceeecccccccccc
Q 007082 556 FLGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 556 ~i~~v~~~~~~~~~~~~~ 573 (619)
.|+||+++++.+.++++.
T Consensus 62 AIaGIVfgiVfimgvva~ 79 (155)
T PF10873_consen 62 AIAGIVFGIVFIMGVVAG 79 (155)
T ss_pred eeeeeehhhHHHHHHHHH
Confidence 366676666655555444
No 129
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.37 E-value=14 Score=25.76 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=9.7
Q ss_pred cccccceeecccccccccc
Q 007082 555 SFLGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 555 ~~i~~v~~~~~~~~~~~~~ 573 (619)
+.|+.++++..++++++..
T Consensus 13 GlIVLlvV~g~ll~flvGn 31 (69)
T PF04689_consen 13 GLIVLLVVAGLLLVFLVGN 31 (69)
T ss_pred CeEEeehHHHHHHHHHHHH
Confidence 3355555555555555554
No 130
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=23.12 E-value=1.3e+02 Score=27.48 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=4.1
Q ss_pred CCCcEEEccC
Q 007082 351 PNLEILSLSG 360 (619)
Q Consensus 351 ~~L~~L~l~~ 360 (619)
.+|+.-|+++
T Consensus 171 a~lerADl~g 180 (302)
T KOG1665|consen 171 AKLERADLEG 180 (302)
T ss_pred hhhccccccc
Confidence 3344444443
No 131
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=21.36 E-value=15 Score=34.97 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.4
Q ss_pred cccceeecccccc
Q 007082 557 LGGVLLFSMRYSF 569 (619)
Q Consensus 557 i~~v~~~~~~~~~ 569 (619)
++|++.|++++++
T Consensus 216 v~g~~~G~~~L~l 228 (278)
T PF06697_consen 216 VVGVVGGVVLLGL 228 (278)
T ss_pred EEEehHHHHHHHH
Confidence 3444444444333
No 132
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.02 E-value=19 Score=29.83 Aligned_cols=10 Identities=20% Similarity=0.786 Sum_probs=4.4
Q ss_pred eeecccccch
Q 007082 576 FFVCFSKTDQ 585 (619)
Q Consensus 576 ~~~~~~~~~~ 585 (619)
+++|-+|+|+
T Consensus 49 i~lcssRKkK 58 (189)
T PF05568_consen 49 IYLCSSRKKK 58 (189)
T ss_pred HHHHhhhhHH
Confidence 4445444443
Done!