Query 007082
Match_columns 619
No_of_seqs 489 out of 5094
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 3.9E-51 1.3E-55 446.3 17.3 485 24-524 14-590 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 2E-49 6.8E-54 432.8 12.5 442 24-510 13-572 (606)
3 2z63_A TOLL-like receptor 4, v 100.0 1.2E-48 3.9E-53 423.9 11.3 444 20-508 5-544 (570)
4 3rgz_A Protein brassinosteroid 100.0 3.7E-48 1.3E-52 432.1 12.1 425 65-497 223-718 (768)
5 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-48 1.4E-52 436.1 4.6 445 26-508 8-572 (844)
6 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-47 3.3E-51 417.2 13.8 475 25-510 7-637 (680)
7 3rgz_A Protein brassinosteroid 100.0 4.9E-46 1.7E-50 414.9 18.7 413 64-497 199-694 (768)
8 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-45 1.3E-49 394.2 19.1 434 27-508 10-523 (549)
9 4g8a_A TOLL-like receptor 4; l 100.0 5.9E-45 2E-49 400.2 14.5 462 25-526 34-612 (635)
10 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-43 4.3E-48 379.5 17.6 449 27-524 5-510 (520)
11 3t6q_A CD180 antigen; protein- 100.0 9.8E-42 3.4E-46 372.0 23.1 416 64-497 32-514 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-42 3.2E-46 372.2 19.4 406 67-497 13-535 (606)
13 4ecn_A Leucine-rich repeat pro 100.0 3.2E-42 1.1E-46 381.1 15.2 408 65-497 323-841 (876)
14 4eco_A Uncharacterized protein 100.0 1.9E-42 6.7E-47 377.1 12.9 409 65-497 81-601 (636)
15 4eco_A Uncharacterized protein 100.0 1.4E-41 4.9E-46 370.3 15.9 386 90-496 81-579 (636)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-42 3E-46 368.2 10.3 433 25-506 34-520 (562)
17 3v47_A TOLL-like receptor 5B a 100.0 9.2E-41 3.1E-45 351.3 17.2 374 66-508 31-421 (455)
18 2z63_A TOLL-like receptor 4, v 100.0 9.9E-41 3.4E-45 361.6 13.7 388 64-474 51-533 (570)
19 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-40 1.9E-44 362.9 19.5 416 64-495 24-548 (680)
20 4ecn_A Leucine-rich repeat pro 100.0 9.2E-40 3.2E-44 361.5 19.8 385 90-495 323-818 (876)
21 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-40 3.8E-45 375.6 7.1 420 68-497 7-540 (844)
22 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-38 2E-42 338.0 23.1 404 64-495 4-463 (549)
23 2z7x_B TOLL-like receptor 1, v 100.0 9.2E-39 3.1E-43 341.8 9.9 404 24-474 23-483 (520)
24 1o6v_A Internalin A; bacterial 100.0 1.1E-35 3.7E-40 312.8 29.7 342 89-473 45-389 (466)
25 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6E-40 311.2 29.9 342 114-497 45-389 (466)
26 3ogk_B Coronatine-insensitive 100.0 5.8E-35 2E-39 317.7 27.6 452 13-493 36-548 (592)
27 2id5_A Lingo-1, leucine rich r 100.0 7.8E-36 2.7E-40 315.4 19.7 313 165-514 33-351 (477)
28 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-34 6.5E-39 303.7 28.2 392 65-513 3-459 (461)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-35 6.3E-40 318.8 19.1 401 64-497 30-487 (562)
30 1jl5_A Outer protein YOPM; leu 100.0 2.4E-35 8.3E-40 307.1 17.6 371 65-497 11-410 (454)
31 4fmz_A Internalin; leucine ric 100.0 4.5E-33 1.5E-37 281.6 29.4 306 137-496 41-346 (347)
32 2p1m_B Transport inhibitor res 100.0 8.2E-34 2.8E-38 308.9 23.8 462 13-514 29-536 (594)
33 3o6n_A APL1; leucine-rich repe 100.0 8.9E-34 3.1E-38 291.3 22.1 312 139-505 44-361 (390)
34 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-34 1.6E-38 313.6 21.1 390 91-497 53-556 (635)
35 3v47_A TOLL-like receptor 5B a 100.0 2.7E-33 9.1E-38 294.3 25.3 324 140-497 30-385 (455)
36 4fmz_A Internalin; leucine ric 100.0 6.9E-33 2.3E-37 280.2 27.3 307 111-472 40-346 (347)
37 1jl5_A Outer protein YOPM; leu 100.0 1.5E-34 5.1E-39 301.2 12.3 394 23-497 12-430 (454)
38 3bz5_A Internalin-J, INLJ; leu 100.0 8.1E-34 2.8E-38 295.9 16.9 345 88-496 40-387 (457)
39 3o6n_A APL1; leucine-rich repe 100.0 8.4E-34 2.9E-38 291.5 16.7 331 88-497 43-375 (390)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-33 3.8E-38 294.8 16.7 345 64-480 41-395 (457)
41 3oja_B Anopheles plasmodium-re 100.0 7.4E-33 2.5E-37 300.0 21.8 313 139-506 50-368 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-32 1.5E-36 285.5 26.3 370 90-509 3-423 (461)
43 3ogk_B Coronatine-insensitive 100.0 7.4E-33 2.5E-37 301.2 20.3 428 68-514 53-543 (592)
44 3oja_B Anopheles plasmodium-re 100.0 8.7E-33 3E-37 299.4 17.3 311 88-475 49-361 (597)
45 2id5_A Lingo-1, leucine rich r 100.0 1.6E-32 5.6E-37 289.9 17.5 294 141-473 33-334 (477)
46 2p1m_B Transport inhibitor res 100.0 1.8E-29 6.2E-34 274.6 24.2 400 64-493 104-541 (594)
47 1xku_A Decorin; proteoglycan, 100.0 3.5E-29 1.2E-33 250.9 20.2 287 141-494 32-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 7.9E-34 252.4 13.9 287 141-494 34-331 (332)
49 3zyj_A Leucine-rich repeat-con 100.0 3.2E-29 1.1E-33 261.4 13.6 258 214-511 45-307 (440)
50 2z80_A TOLL-like receptor 2, v 100.0 8.8E-29 3E-33 250.4 14.3 294 216-524 35-343 (353)
51 2z66_A Variable lymphocyte rec 100.0 4.1E-29 1.4E-33 247.6 11.5 260 215-509 10-274 (306)
52 3zyi_A Leucine-rich repeat-con 100.0 1E-28 3.5E-33 258.5 14.5 256 215-510 57-317 (452)
53 1xku_A Decorin; proteoglycan, 100.0 6.2E-28 2.1E-32 241.8 17.9 269 140-470 52-330 (330)
54 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-28 1.5E-32 243.0 14.7 262 140-470 54-331 (332)
55 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-29 9.2E-34 249.1 5.2 250 231-498 50-306 (313)
56 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-28 1E-32 238.7 10.7 222 279-514 32-256 (285)
57 1ogq_A PGIP-2, polygalacturona 99.9 1E-28 3.5E-33 245.0 2.8 252 140-473 50-306 (313)
58 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-28 2.4E-32 239.6 6.6 266 141-474 11-278 (317)
59 2z80_A TOLL-like receptor 2, v 99.9 2E-25 6.8E-30 225.7 16.8 281 113-452 29-318 (353)
60 2z66_A Variable lymphocyte rec 99.9 7.2E-26 2.5E-30 224.3 12.3 241 190-473 9-262 (306)
61 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-26 2E-30 225.7 11.6 246 233-505 12-259 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.9 9.6E-25 3.3E-29 234.0 19.8 266 115-457 40-306 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.1E-29 231.4 21.6 261 165-477 41-302 (622)
64 2z62_A TOLL-like receptor 4, v 99.9 8.2E-26 2.8E-30 220.2 9.0 215 280-509 29-251 (276)
65 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.4E-29 225.9 16.8 242 189-472 44-292 (440)
66 3oja_A Leucine-rich immune mol 99.9 5.6E-25 1.9E-29 231.3 13.3 225 253-504 33-258 (487)
67 2o6q_A Variable lymphocyte rec 99.9 5.1E-25 1.8E-29 213.6 12.1 213 281-508 18-231 (270)
68 1p9a_G Platelet glycoprotein I 99.9 7.1E-25 2.4E-29 214.4 12.6 213 278-509 9-221 (290)
69 3zyi_A Leucine-rich repeat-con 99.9 1.8E-24 6.3E-29 226.2 16.2 242 189-472 55-303 (452)
70 4fcg_A Uncharacterized protein 99.9 4.5E-25 1.5E-29 220.0 10.3 231 232-495 82-313 (328)
71 1ozn_A Reticulon 4 receptor; N 99.9 2E-24 6.7E-29 211.5 14.2 222 215-473 14-239 (285)
72 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6.3E-30 235.0 7.2 234 165-466 35-269 (487)
73 1wwl_A Monocyte differentiatio 99.9 1.4E-25 4.6E-30 222.5 5.3 246 231-497 43-310 (312)
74 4fcg_A Uncharacterized protein 99.9 9E-25 3.1E-29 217.8 10.6 203 277-497 79-291 (328)
75 1wwl_A Monocyte differentiatio 99.9 2E-25 6.9E-30 221.3 1.0 250 185-474 40-311 (312)
76 2ca6_A RAN GTPase-activating p 99.9 3.6E-23 1.2E-27 211.8 14.6 248 239-499 17-319 (386)
77 2ca6_A RAN GTPase-activating p 99.9 2.9E-22 1E-26 205.1 19.2 260 82-361 24-340 (386)
78 3m19_A Variable lymphocyte rec 99.9 4.3E-23 1.5E-27 197.7 11.4 191 302-509 15-206 (251)
79 2ast_B S-phase kinase-associat 99.9 6E-22 2E-26 198.9 20.2 255 188-480 47-314 (336)
80 3rfs_A Internalin B, repeat mo 99.9 3.6E-23 1.2E-27 200.8 10.4 203 280-500 20-222 (272)
81 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1E-26 194.0 13.5 163 297-473 57-219 (270)
82 2z62_A TOLL-like receptor 4, v 99.9 1.5E-22 5.1E-27 197.1 10.9 182 277-473 50-238 (276)
83 3rfs_A Internalin B, repeat mo 99.9 1.6E-22 5.4E-27 196.2 9.5 196 277-495 39-234 (272)
84 2ast_B S-phase kinase-associat 99.9 4.2E-21 1.4E-25 192.7 19.8 221 232-469 48-282 (336)
85 3goz_A Leucine-rich repeat-con 99.9 1.2E-21 4.2E-26 198.3 16.0 109 95-205 3-126 (362)
86 3goz_A Leucine-rich repeat-con 99.9 9.9E-22 3.4E-26 199.1 14.8 196 70-268 3-239 (362)
87 1h6u_A Internalin H; cell adhe 99.9 3.7E-21 1.3E-25 189.9 16.5 193 277-497 39-231 (308)
88 2v9t_B SLIT homolog 2 protein 99.9 1.1E-21 3.7E-26 183.5 10.8 166 329-510 14-179 (220)
89 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-21 6.6E-26 181.8 10.3 167 328-510 13-180 (220)
90 4glp_A Monocyte differentiatio 99.8 1.1E-21 3.8E-26 194.3 6.9 226 255-496 65-307 (310)
91 1p9a_G Platelet glycoprotein I 99.8 5.9E-21 2E-25 186.5 11.9 201 229-472 8-208 (290)
92 4glp_A Monocyte differentiatio 99.8 7.5E-21 2.6E-25 188.3 12.5 226 230-473 63-308 (310)
93 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 8E-25 184.2 14.4 152 297-474 81-232 (308)
94 2xot_A Amphoterin-induced prot 99.8 2.2E-21 7.6E-26 196.2 6.0 185 304-504 21-210 (361)
95 3m19_A Variable lymphocyte rec 99.8 2.3E-20 7.9E-25 178.7 10.9 181 279-474 14-194 (251)
96 2xwt_C Thyrotropin receptor; s 99.8 6.5E-21 2.2E-25 181.2 6.1 195 280-494 32-237 (239)
97 2xwt_C Thyrotropin receptor; s 99.8 1.6E-20 5.3E-25 178.5 4.9 195 255-470 32-237 (239)
98 3e6j_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 168.7 12.7 166 326-508 19-185 (229)
99 1h6t_A Internalin B; cell adhe 99.8 2.8E-19 9.5E-24 174.8 10.7 181 287-495 32-212 (291)
100 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4E-23 170.4 13.0 174 277-476 44-217 (291)
101 2o6s_A Variable lymphocyte rec 99.8 3E-18 1E-22 158.9 12.5 157 328-500 9-165 (208)
102 1w8a_A SLIT protein; signaling 99.8 1.2E-18 4E-23 159.1 9.3 145 354-512 11-155 (192)
103 1m9s_A Internalin B; cell inva 99.7 2.4E-18 8.1E-23 184.3 11.2 193 255-476 22-214 (605)
104 2wfh_A SLIT homolog 2 protein 99.7 2E-18 6.8E-23 157.5 8.7 141 354-510 13-153 (193)
105 2o6s_A Variable lymphocyte rec 99.7 1.2E-18 4.1E-23 161.6 7.3 162 301-483 28-189 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-18 4.7E-23 162.4 7.6 155 304-474 14-168 (220)
107 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 179.4 14.3 172 252-450 41-212 (605)
108 3cvr_A Invasion plasmid antige 99.7 2E-18 6.7E-23 182.8 7.6 134 232-388 60-193 (571)
109 4ay9_X Follicle-stimulating ho 99.7 2.1E-18 7.1E-23 173.7 6.8 243 215-499 12-261 (350)
110 4ay9_X Follicle-stimulating ho 99.7 1.4E-18 4.8E-23 174.9 4.1 234 191-469 12-256 (350)
111 2v9t_B SLIT homolog 2 protein 99.7 8E-18 2.7E-22 157.2 8.0 153 304-473 14-166 (220)
112 4ezg_A Putative uncharacterize 99.7 2.3E-17 8E-22 151.3 10.4 149 326-495 44-193 (197)
113 4ezg_A Putative uncharacterize 99.7 4.8E-17 1.7E-21 149.2 12.4 154 298-473 41-195 (197)
114 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.2E-22 166.5 9.1 102 374-489 225-327 (329)
115 2xot_A Amphoterin-induced prot 99.7 8.4E-18 2.9E-22 169.9 7.4 175 283-472 22-202 (361)
116 3cvr_A Invasion plasmid antige 99.7 2.9E-17 9.9E-22 173.8 11.7 192 213-458 60-253 (571)
117 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.3E-22 159.7 8.8 166 303-497 21-186 (263)
118 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 160.8 6.4 172 277-475 17-188 (263)
119 3e6j_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 153.5 9.1 154 303-474 21-174 (229)
120 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 143.5 12.2 142 353-509 9-151 (177)
121 3sb4_A Hypothetical leucine ri 99.7 6E-17 2.1E-21 161.5 9.3 280 163-466 24-328 (329)
122 1dce_A Protein (RAB geranylger 99.6 8E-18 2.7E-22 179.2 -1.3 208 251-490 346-567 (567)
123 1dce_A Protein (RAB geranylger 99.6 3E-18 1E-22 182.5 -5.6 207 228-466 346-567 (567)
124 2je0_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 134.9 6.0 129 350-492 16-149 (149)
125 2ell_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 137.6 6.2 131 351-495 24-159 (168)
126 1w8a_A SLIT protein; signaling 99.6 2.9E-15 1E-19 136.5 9.4 130 329-474 11-141 (192)
127 3g39_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 132.0 9.0 117 377-508 11-128 (170)
128 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.3E-19 147.7 12.9 261 162-495 111-382 (401)
129 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.5E-20 134.7 5.9 134 326-474 24-162 (168)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 130.9 11.0 134 327-476 8-141 (177)
131 4fs7_A Uncharacterized protein 99.6 8E-15 2.7E-19 150.0 10.8 332 105-488 61-393 (394)
132 3un9_A NLR family member X1; l 99.6 7.6E-15 2.6E-19 147.9 9.9 187 301-495 72-282 (372)
133 2je0_A Acidic leucine-rich nuc 99.5 3.2E-15 1.1E-19 130.3 5.7 128 326-468 17-149 (149)
134 2wfh_A SLIT homolog 2 protein 99.5 2.1E-14 7.1E-19 130.8 10.9 128 329-473 13-140 (193)
135 4fs7_A Uncharacterized protein 99.5 2E-14 6.8E-19 147.0 10.5 325 83-464 64-393 (394)
136 4fdw_A Leucine rich hypothetic 99.5 7.3E-14 2.5E-18 142.1 14.1 193 280-495 158-357 (401)
137 2r9u_A Variable lymphocyte rec 99.5 3E-14 1E-18 127.3 9.8 116 378-508 15-131 (174)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 129.5 6.5 132 349-495 17-152 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 3.5E-14 1.2E-18 127.4 7.1 131 326-473 19-154 (176)
140 3un9_A NLR family member X1; l 99.5 3.7E-13 1.3E-17 135.5 14.8 163 60-225 67-252 (372)
141 4b8c_D Glucose-repressible alc 99.5 2E-14 6.8E-19 158.0 4.7 214 140-388 173-404 (727)
142 4b8c_D Glucose-repressible alc 99.5 4.1E-14 1.4E-18 155.5 7.1 121 318-456 217-337 (727)
143 1ds9_A Outer arm dynein; leuci 99.4 1.7E-15 5.7E-20 139.0 -4.0 129 348-495 45-184 (198)
144 4gt6_A Cell surface protein; l 99.4 3.5E-12 1.2E-16 130.3 13.9 327 109-494 57-389 (394)
145 2ifg_A High affinity nerve gro 99.4 9.2E-13 3.1E-17 132.3 9.2 102 407-509 27-129 (347)
146 1ds9_A Outer arm dynein; leuci 99.4 8.8E-15 3E-19 134.2 -5.9 133 320-473 43-186 (198)
147 3g39_A Variable lymphocyte rec 99.3 1.2E-12 4.2E-17 116.3 8.0 108 352-474 10-117 (170)
148 2r9u_A Variable lymphocyte rec 99.3 2.4E-12 8.1E-17 114.9 8.0 107 353-474 14-120 (174)
149 4gt6_A Cell surface protein; l 99.3 7.9E-12 2.7E-16 127.7 11.7 325 84-471 57-390 (394)
150 2ifg_A High affinity nerve gro 99.1 1E-10 3.6E-15 117.2 8.3 103 330-448 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 6.6E-10 2.2E-14 112.9 12.9 81 86-173 42-122 (379)
152 4h09_A Hypothetical leucine ri 99.0 1.3E-09 4.6E-14 110.5 13.8 139 326-482 217-355 (379)
153 3e4g_A ATP synthase subunit S, 99.0 2.3E-10 7.8E-15 99.9 6.4 89 66-155 62-155 (176)
154 2ra8_A Uncharacterized protein 98.9 3.9E-09 1.3E-13 105.1 11.3 72 434-506 251-329 (362)
155 3e4g_A ATP synthase subunit S, 98.9 2.3E-09 7.8E-14 93.5 7.4 89 90-179 61-155 (176)
156 2ra8_A Uncharacterized protein 98.9 1.2E-08 4.1E-13 101.6 12.9 86 299-386 250-341 (362)
157 1io0_A Tropomodulin; LRR prote 98.9 2.6E-08 8.8E-13 89.5 13.2 122 80-202 26-165 (185)
158 1io0_A Tropomodulin; LRR prote 98.8 4.1E-08 1.4E-12 88.2 11.9 117 108-224 29-163 (185)
159 3rfe_A Platelet glycoprotein I 98.4 1.6E-07 5.5E-12 78.4 4.5 86 438-526 11-99 (130)
160 3rw6_A Nuclear RNA export fact 98.3 1E-07 3.5E-12 89.8 1.0 17 373-389 168-184 (267)
161 3rw6_A Nuclear RNA export fact 98.3 2.4E-07 8.3E-12 87.3 3.4 80 408-489 167-257 (267)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 9.1E-05 3.1E-09 65.8 13.6 119 81-200 32-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.9 0.00015 5.2E-09 64.3 12.6 112 111-222 37-167 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.002 6.9E-08 53.3 5.9 56 415-472 12-68 (130)
165 2ks1_B Epidermal growth factor 92.4 0.0082 2.8E-07 37.9 -2.1 11 576-586 31-41 (44)
166 2l2t_A Receptor tyrosine-prote 88.3 0.016 5.6E-07 36.4 -3.4 11 576-586 30-40 (44)
167 2jwa_A Receptor tyrosine-prote 82.2 0.035 1.2E-06 34.8 -3.9 7 557-563 14-20 (44)
168 2k1k_A Ephrin type-A receptor 75.3 0.11 3.7E-06 31.7 -3.2 20 554-573 10-29 (38)
169 2lz0_A Uncharacterized protein 63.4 9.6 0.00033 29.1 4.6 45 423-468 8-52 (100)
170 2lz0_A Uncharacterized protein 55.5 8.7 0.0003 29.4 3.1 49 444-493 5-53 (100)
171 1iij_A ERBB-2 receptor protein 29.9 2.1 7.1E-05 25.3 -3.1 8 576-583 27-34 (35)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-51 Score=446.30 Aligned_cols=485 Identities=18% Similarity=0.173 Sum_probs=302.6
Q ss_pred HHHHHHhccccccCchHHHHHHHHHHHHhhcc----ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCC
Q 007082 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI----FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD 99 (619)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~----~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~ 99 (619)
...++|+...+..+|..++.. ++.|.-.+.. .|..+.. +++|++|+|++|. +....+..|+++++|++|+|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~-l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNS-TECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTT-CCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCCCc-CcEEEccCCccCcCChhHhcc-CccceEEECCCCc-cceeChhhccCccccCeeeCCC
Confidence 345778889999999887761 1111111100 1222221 3455555555554 4444444555555555555555
Q ss_pred CCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh
Q 007082 100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL 179 (619)
Q Consensus 100 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 179 (619)
|. +....+.+|+++++|++|++++| .++...+..++++++|++|++++|.+++.....+..+++|++|++++|.+.+.
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred Cc-ccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 54 44444444555555666666555 44444444455556666666666655543323333456666666666666655
Q ss_pred HHHHhhcCCCCC--EEEccCCccCchhhHhhcCC----------------------------------------------
Q 007082 180 VLRSLQVLTKLE--YLDLWGSQVSNRGAAVLKMF---------------------------------------------- 211 (619)
Q Consensus 180 ~~~~~~~l~~L~--~L~l~~n~i~~~~~~~~~~~---------------------------------------------- 211 (619)
.+..|+.+++|+ +|++++|.+.+..+..|...
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 555566666666 55555555544333222110
Q ss_pred -----CCCCEEecCCCCCCCC-----CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHH---------
Q 007082 212 -----PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA--------- 272 (619)
Q Consensus 212 -----~~L~~L~l~~n~l~~l-----~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 272 (619)
.+|+.|++++|.++.+ ..+++|++|++++|.++.+|..+..+++|++|++++|.+...++.
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 0233333333433322 235666666776666666666666666666666666666654332
Q ss_pred ---------------HhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEc
Q 007082 273 ---------------FLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333 (619)
Q Consensus 273 ---------------~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 333 (619)
..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+... ++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEEC
Confidence 1123444555555555554443 134555666666666666655545455444 66777777
Q ss_pred cCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcC
Q 007082 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL 413 (619)
Q Consensus 334 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L 413 (619)
++|++++..+...++.+++|++|++++|.+++..+..+..+++|++|++++|++++.... ....+..+++|
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l~~L 478 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTLGRL 478 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGCTTC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccCCCc
Confidence 777666544433335577777777777777776666677777788888877777653110 00168889999
Q ss_pred CEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCC
Q 007082 414 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 493 (619)
Q Consensus 414 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n 493 (619)
++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++| .|++++|++++..|..+..+++|+.+++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 999999999998888999999999999999999999999999999999 9999999999988888888899999999999
Q ss_pred ccCCHHHHHHHHHhCCC--eeeecccccccCCC
Q 007082 494 WLLTEDAILQFCKMHPR--IEVWHELSVICPSD 524 (619)
Q Consensus 494 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 524 (619)
||.|+|...++.+|... ..+.......|..|
T Consensus 558 ~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p 590 (606)
T 3t6q_A 558 PLDCTCSNIYFLEWYKENMQKLEDTEDTLCENP 590 (606)
T ss_dssp CEECSGGGHHHHHHHHHCGGGEECGGGCBEEES
T ss_pred CccccCCcHHHHHHHHhCcccccCCCCCeeCCc
Confidence 99999998888887642 22333444556554
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-49 Score=432.77 Aligned_cols=442 Identities=18% Similarity=0.153 Sum_probs=309.1
Q ss_pred HHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCC
Q 007082 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV 103 (619)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 103 (619)
...++|++..++.+|..++. ++++|+|++|. +....+..|+++++|++|++++|. +
T Consensus 13 ~~~~~c~~~~l~~ip~~~~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l 68 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIPS----------------------STKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-I 68 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred CCceEccCCCcccCCCCCCC----------------------CcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCc-c
Confidence 34678899999999987654 56777777766 555445556667777777777665 5
Q ss_pred ChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh-hHHH
Q 007082 104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLR 182 (619)
Q Consensus 104 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~ 182 (619)
+...+.+|.++++|++|+|++| .++...+..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..|.
T Consensus 69 ~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~ 147 (606)
T 3vq2_A 69 ETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred cccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH
Confidence 5555555666777777777776 4555556666667777777777776666554556666777777777766654 3356
Q ss_pred HhhcCCCCCEEEccCCccCchhhHhhcCCC---------------------------CCCEEecCCCCC-----------
Q 007082 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFP---------------------------RLSFLNLAWTGV----------- 224 (619)
Q Consensus 183 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~---------------------------~L~~L~l~~n~l----------- 224 (619)
.|+++++|++|++++|.+++..+..|..+. +|+.|++++|.+
T Consensus 148 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 227 (606)
T 3vq2_A 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227 (606)
T ss_dssp GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcc
Confidence 666667777777766666655444333322 233333333322
Q ss_pred ----------------------------------------------------------------------CC---CCCCC
Q 007082 225 ----------------------------------------------------------------------TK---LPNIS 231 (619)
Q Consensus 225 ----------------------------------------------------------------------~~---l~~l~ 231 (619)
.. ++.++
T Consensus 228 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~ 307 (606)
T 3vq2_A 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307 (606)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTC
T ss_pred ccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccc
Confidence 21 11233
Q ss_pred CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEe
Q 007082 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLD 307 (619)
Q Consensus 232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~ 307 (619)
+|++|++++|.+..+|. + .+++|++|++++|...... .+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 308 ~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cCCEEEcccccCccccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 44444444444444442 2 4455555555555322211 233566777777777776554 4566777788888
Q ss_pred CcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCcc
Q 007082 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387 (619)
Q Consensus 308 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~ 387 (619)
+++|.+++.. ..+..+ ++|+.|++++|++.+..+...++.+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 383 L~~n~l~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 383 LSFNGAIIMS-ANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CCSCSEEEEC-CCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccccch-hhccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 8777766533 334444 78888888888877765533346788899999999888887777888889999999999988
Q ss_pred Ccc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEc
Q 007082 388 KGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 466 (619)
Q Consensus 388 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 466 (619)
++. +|. .+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 461 ~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 461 KDNTLSN------------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp GGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCcchHH------------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 873 566 7899999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCccCchhhccCCCCC-CCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082 467 RDAVLTNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 467 ~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~~~ 510 (619)
++|+++.. |..+..++ +|+.+++++|||.|+|...|+.+|...
T Consensus 529 ~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 529 SFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp TTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred CCCcCccc-CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 99999954 55577776 699999999999999999999999864
No 3
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=423.89 Aligned_cols=444 Identities=18% Similarity=0.198 Sum_probs=359.8
Q ss_pred cchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCC
Q 007082 20 SGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD 99 (619)
Q Consensus 20 ~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~ 99 (619)
.......++|++..+..+|..++. +++.|+|++|. ++...+..|.++++|++|+|++
T Consensus 5 ~~~~~~~~~c~~~~l~~ip~~l~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 61 (570)
T 2z63_A 5 EVVPNITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSR 61 (570)
T ss_dssp EEETTTEEECCSSCCSSCCSSSCS----------------------SCCEEECCSCC-CCEECTTTTTTCSSCCEEECTT
T ss_pred ccCCCcEEEeCCCCccccCCCccc----------------------cccEEEccCCc-cCccChhHhhCCCCceEEECCC
Confidence 333344578888899999986554 68888888887 6555556778888888888888
Q ss_pred CCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh
Q 007082 100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL 179 (619)
Q Consensus 100 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 179 (619)
|. ++...+.+|.++++|++|+|++| .++...+..|+++++|++|++++|.++......++.+++|++|++++|.+.+.
T Consensus 62 n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 139 (570)
T 2z63_A 62 CE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (570)
T ss_dssp CC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred Cc-CCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence 86 66666666888888888888888 56666667788888888888888888776555678888888888888887763
Q ss_pred -HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC----CEEecCCCCCCCC---------------------------
Q 007082 180 -VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKL--------------------------- 227 (619)
Q Consensus 180 -~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L----~~L~l~~n~l~~l--------------------------- 227 (619)
.|..|+++++|++|++++|.+++..+..+..+++| +.+++++|.+..+
T Consensus 140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHH
T ss_pred cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhh
Confidence 46778888888888888888887766666666666 6677766654422
Q ss_pred -----------------------------------------------------------CCCCCCcEEEcCCcccccccc
Q 007082 228 -----------------------------------------------------------PNISSLECLNLSNCTIDSILE 248 (619)
Q Consensus 228 -----------------------------------------------------------~~l~~L~~L~l~~~~l~~l~~ 248 (619)
..+++|++|++++|.+..+|.
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 299 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh
Confidence 124677777888887777777
Q ss_pred ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH--HHHHHhcCC
Q 007082 249 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGA 326 (619)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~ 326 (619)
.+..+ +|++|++++|.+..++. ..+++|+.|++++|.+........+++|++|++++|.+++.. +..+..+ +
T Consensus 300 ~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~ 373 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-T 373 (570)
T ss_dssp CCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-S
T ss_pred hhccC-CccEEeeccCcccccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-C
Confidence 77777 88888888888775554 367888888888888776644478899999999999988654 4566666 9
Q ss_pred CCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 327 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
+|++|++++|.+.+.... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.
T Consensus 374 ~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------ 439 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------ 439 (570)
T ss_dssp CCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------------
T ss_pred ccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------------
Confidence 999999999998886554 3679999999999999887655 4678899999999999999988887
Q ss_pred hhccCCcCCEEEccCCCCC-CCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (619)
.+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 7899999999999999987 568889999999999999999999998999999999999999999999998888999999
Q ss_pred CcEEEcCCCccCCHHHHHHHH-HhC
Q 007082 485 LKLLDLHGGWLLTEDAILQFC-KMH 508 (619)
Q Consensus 485 L~~l~l~~n~~~~~~~~~~~~-~~~ 508 (619)
|+.+++++|++.|+|...++. .|.
T Consensus 520 L~~L~l~~N~~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRIDYLSRWL 544 (570)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred CcEEEecCCcccCCCcchHHHHHHH
Confidence 999999999999999765554 554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-48 Score=432.10 Aligned_cols=425 Identities=19% Similarity=0.155 Sum_probs=320.7
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcC-CCCCc
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLE 143 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~ 143 (619)
++|++|++++|. +.+..+..++.+++|++|++++|. +....+. ..+++|++|++++| .+++..+..+.. +++|+
T Consensus 223 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~--~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 223 SALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQ-FVGPIPP--LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSC-CEESCCC--CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred CCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCc-ccCccCc--cccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence 445555555554 444444455555555555555544 2211111 14455555555555 333333444443 36777
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCC-CCCEEecCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFP-RLSFLNLAW 221 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~ 221 (619)
+|++++|.+++..+..|+.+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..|..+..++ +|+.|++++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence 7777777666665666777777777777777766544443 67777777777777777766666666665 777777777
Q ss_pred CCCCC-----CCC--CCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcch
Q 007082 222 TGVTK-----LPN--ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (619)
Q Consensus 222 n~l~~-----l~~--l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 293 (619)
|.+.+ +.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEEECCCCcccC
Confidence 76652 112 677999999999888 5677777899999999999998865443 35678999999999999986
Q ss_pred h--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082 294 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371 (619)
Q Consensus 294 ~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 371 (619)
. ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..+..+ +.+++|++|++++|.+++..|..+
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHH
Confidence 5 678889999999999999998877777777 999999999999998777766 679999999999999998888899
Q ss_pred hCCCCCcEEEccCCccCcchhccccchhh----------------------------------------hh---------
Q 007082 372 SMMPSLKFIDISNTDIKGFIQQVGAETDL----------------------------------------VL--------- 402 (619)
Q Consensus 372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~----------------------------------------~~--------- 402 (619)
..+++|++|++++|++++.+|........ +.
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 99999999999999999887763211000 00
Q ss_pred ---------hHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082 403 ---------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 403 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
....+..+++|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 00135567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCcEEEcCCCccCC
Q 007082 474 SGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 474 ~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
.+|..+..++.|+.||+++|++..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999854
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-48 Score=436.14 Aligned_cols=445 Identities=19% Similarity=0.221 Sum_probs=294.2
Q ss_pred HHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCCh
Q 007082 26 KWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS 105 (619)
Q Consensus 26 ~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 105 (619)
.++|+...++.+|. ++. ++++|||++|. +....+..|.++++|++|+|++|..+..
T Consensus 8 ~~dcs~~~L~~vP~-lp~----------------------~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~ 63 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLN----------------------TTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLT 63 (844)
T ss_dssp EEEESCCCSSCCCS-SCT----------------------TCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCE
T ss_pred EEEccCCCCCCCCC-CCC----------------------CcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccc
Confidence 56788889999997 544 68888888877 6665566677888888888888754444
Q ss_pred HHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHH--HhhcCCCCCEEEcCCCCCChhHH-H
Q 007082 106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIA--LLSSLQNLSVLDLGGLPVTDLVL-R 182 (619)
Q Consensus 106 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~-~ 182 (619)
..+.+|.++++|++|+|++| .+....+..|+++++|++|++++|.+++..+. .|+.+++|++|++++|.+.+..+ .
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred cCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence 44566777888888888887 56666677777888888888888877764333 36777888888888887766543 4
Q ss_pred HhhcCCCCCEEEccCCccCchhhHhhcCC--CC------------------------------CCEEecCCCCCCC----
Q 007082 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PR------------------------------LSFLNLAWTGVTK---- 226 (619)
Q Consensus 183 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~~------------------------------L~~L~l~~n~l~~---- 226 (619)
.|+++++|++|++++|.+++..+..+..+ ++ |+.|++++|.+..
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 67778888888888777765544444332 22 5666666654321
Q ss_pred -------------------------------------CCC--CCCCcEEEcCCccccccccc-cCCCCCccEEeccCccc
Q 007082 227 -------------------------------------LPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTF 266 (619)
Q Consensus 227 -------------------------------------l~~--l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~ 266 (619)
+.. .++|+.|++++|.+..+++. +..+++|+.|++++|.+
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence 000 24567777777766655443 33677777777777777
Q ss_pred cchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHH
Q 007082 267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 344 (619)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 344 (619)
.+.++. .+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++...
T Consensus 303 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~- 379 (844)
T 3j0a_A 303 NKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIHF- 379 (844)
T ss_dssp CEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCSS-
T ss_pred CCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCcccC-
Confidence 665443 345667777777777777655 456667777777777777665554444444 667777776666654311
Q ss_pred HHHhcCCCCcEEE--------------------ccCCCCChH-HHHHhhCCCCCcEEEccCCccCcchhccccc------
Q 007082 345 ILAGHLPNLEILS--------------------LSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAE------ 397 (619)
Q Consensus 345 ~~~~~~~~L~~L~--------------------l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------ 397 (619)
+++|+.|+ +++|++++. .+..+..+++|++|++++|++++..+.....
T Consensus 380 -----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 454 (844)
T 3j0a_A 380 -----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454 (844)
T ss_dssp -----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred -----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc
Confidence 22222222 222222221 1122335566666666666655432210000
Q ss_pred -----hhhh-------hhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEE
Q 007082 398 -----TDLV-------LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 465 (619)
Q Consensus 398 -----~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 465 (619)
...+ .....|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++++++..+. ++|+.|+
T Consensus 455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 532 (844)
T 3j0a_A 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532 (844)
T ss_dssp BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEE
Confidence 0000 0001467778888888888888888888888889999999999998887766665 7899999
Q ss_pred cCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhC
Q 007082 466 IRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 508 (619)
Q Consensus 466 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 508 (619)
|++|++++..|..+ .+|+.+++++|||.|+|.+.++..|.
T Consensus 533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred CCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHH
Confidence 99999988877665 58899999999999999888777764
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-47 Score=417.16 Aligned_cols=475 Identities=18% Similarity=0.216 Sum_probs=291.7
Q ss_pred HHHHHhccccccCchHHHHHHHHHHHHhhcc---Ch-hhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCC
Q 007082 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI---FP-SLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADC 100 (619)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~---~p-~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~ 100 (619)
+.++|++..+..+|..++. .++.|...+.. .| ..+.. +++|++|+|++|. +....+..|+++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~~-~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSCT-TCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccCC-CCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC
Confidence 4578889999999987763 12222111111 22 22332 4788999998887 66666777888899999999888
Q ss_pred CCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhH
Q 007082 101 RRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV 180 (619)
Q Consensus 101 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 180 (619)
. ++.....+|+++++|++|++++| .+....+..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+..
T Consensus 84 ~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 84 E-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred c-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 6 66555556888889999999988 566665667888899999999998888776677788889999999999888877
Q ss_pred HHHhh--cCCCCCEEEccCCccCchhhHhhcCC---------------------------CC------------------
Q 007082 181 LRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF---------------------------PR------------------ 213 (619)
Q Consensus 181 ~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~---------------------------~~------------------ 213 (619)
+..+. .+++|++|++++|.+++..+..|..+ ++
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 76654 46889999998888776655544322 22
Q ss_pred --------CCEEecCCCCCCC-----CCCCCCCcEEEcCCcccccccc-ccCC---------------------------
Q 007082 214 --------LSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNEN--------------------------- 252 (619)
Q Consensus 214 --------L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~-~~~~--------------------------- 252 (619)
|+.|++++|.+.. +..+++|++|++++|.+..+++ .+..
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 4555555554432 2245556666665555543322 1112
Q ss_pred ------CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC----------------------------cchh--hh
Q 007082 253 ------KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS----------------------------LSRF--CF 296 (619)
Q Consensus 253 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----------------------------l~~~--~~ 296 (619)
+++|++|++++|.+.+.++. .+..+++|++|++++|. ++.. ..
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 23333333333333332221 12233333333333332 1111 12
Q ss_pred hhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEccCCCCCCchHHHH-------------------------HhcC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGIL-------------------------AGHL 350 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------------------~~~~ 350 (619)
+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|++++..+..+ ++.+
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCc-ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 3334444444444444432211 122222 444444444443322211111 1234
Q ss_pred CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 430 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 430 (619)
++|++|++++|++++..+..|.++++|++|++++|++++..+...+. .....|.++++|++|++++|+++...+..
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG----GPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT----SCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC----CcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 44555555555555444444455555555555555554332110000 00013677888888888888888655567
Q ss_pred ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCC-CCCCCcEEEcCCCccCCHHHH-HHHHHhC
Q 007082 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGGWLLTEDAI-LQFCKMH 508 (619)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~-~~~~~~~ 508 (619)
|..+++|+.|+|++|+++++++..|..+++|+.|+|++|++++..+..+. .+++|+.+++++|||.|+|.. .||.+|.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 88899999999999999988888888899999999999999988777666 578999999999999999985 7777776
Q ss_pred CC
Q 007082 509 PR 510 (619)
Q Consensus 509 ~~ 510 (619)
..
T Consensus 636 ~~ 637 (680)
T 1ziw_A 636 NE 637 (680)
T ss_dssp SC
T ss_pred Hh
Confidence 43
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-46 Score=414.94 Aligned_cols=413 Identities=22% Similarity=0.238 Sum_probs=320.8
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
+++|++|+|++|. +.+..+. ++.+++|++|++++|. ++...+..+.++++|++|++++| .+....+.. .+++|+
T Consensus 199 l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCC
T ss_pred CCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCC
Confidence 3456666666665 3333333 5566666666666665 55455556666666666666666 333222221 566666
Q ss_pred EEEccCCCCChhHHHHhhc-CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHh-hcCCCCCCEEecCC
Q 007082 144 KLWLSETGLTADGIALLSS-LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV-LKMFPRLSFLNLAW 221 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~ 221 (619)
+|++++|.+++..+..+.. +++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 6666666665444444444 477888888877777777777777888888888888777555544 77788888888888
Q ss_pred CCCC-CCC----CCC-CCcEEEcCCcccc-ccccccCC--CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082 222 TGVT-KLP----NIS-SLECLNLSNCTID-SILEGNEN--KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (619)
Q Consensus 222 n~l~-~l~----~l~-~L~~L~l~~~~l~-~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (619)
|.+. .++ .++ +|++|++++|.+. .++..+.. +++|++|++++|.+.+..+. .+..+++|+.|++++|.++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCccc
Confidence 8776 333 344 7888888888777 35555554 77899999999988854433 3558899999999999987
Q ss_pred hh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082 293 RF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (619)
Q Consensus 293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 370 (619)
+. ..+..+++|++|++++|.+.+..+..+... ++|++|++++|++++..+..+ +.+++|++|++++|++++..|..
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCccCCcCChH
Confidence 65 678899999999999999998888777777 999999999999998767666 67999999999999999988999
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc-------------------
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL------------------- 431 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------- 431 (619)
++.+++|++|++++|++++.+|. .+..+++|++|++++|.+++.+|..+
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPA------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCG------------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred HhcCCCCCEEECCCCcccCcCCH------------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 99999999999999999999998 89999999999999999887666543
Q ss_pred ---------------------------------------------------cCCCCCCEEecCCCCCCchhHHhhcCCCC
Q 007082 432 ---------------------------------------------------STFKELIHLSLRNASLTDVSLHQLSSLSK 460 (619)
Q Consensus 432 ---------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 460 (619)
..+++|+.|+|++|++++.+|..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 33578999999999999999999999999
Q ss_pred CCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 461 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
|+.|+|++|+++|.+|..+..+++|+.||+++|.+..
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 9999999999999999999999999999999999854
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-45 Score=394.19 Aligned_cols=434 Identities=21% Similarity=0.226 Sum_probs=282.6
Q ss_pred HHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChH
Q 007082 27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS 106 (619)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 106 (619)
++++...++.+|..++. ++++|+|++|. +.+..+..|+++++|++|++++|. ++..
T Consensus 10 c~~~~~~l~~ip~~~~~----------------------~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~ 65 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTA----------------------AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTI 65 (549)
T ss_dssp EECTTSCCSSCCSCCCT----------------------TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEE
T ss_pred EECCCCccccccccCCC----------------------CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCcc
Confidence 56677888888876543 57778887776 555555567777778888887776 6665
Q ss_pred HHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChh-HHHHhhcCCCCCEEEcCCCC-CChhHHHHh
Q 007082 107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSL 184 (619)
Q Consensus 107 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~ 184 (619)
.+.+|.++++|++|++++| .+....+..++++++|++|++++|.+++. .+..++.+++|++|++++|. +....+..|
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred ChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 5566777777888888777 56666666677777788888877777653 23456777777777777776 444434567
Q ss_pred hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCccccccc---ccc-CCCCC
Q 007082 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL---EGN-ENKAP 255 (619)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~---~~~-~~~~~ 255 (619)
.++++|++|++++|.+++..|..+..+++|+.|++++|.+..++ .+++|++|++++|.+..++ ..+ ..+++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 77777777777777777766666666666666666666555432 3556666666666555431 111 13444
Q ss_pred ccEEeccCccccchhHHH---h----------------------------------------------------------
Q 007082 256 LAKISLAGTTFINEREAF---L---------------------------------------------------------- 274 (619)
Q Consensus 256 L~~L~l~~~~~~~~~~~~---~---------------------------------------------------------- 274 (619)
|+.|++++|.+.+..... .
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 444444444433211100 0
Q ss_pred -hhccCCCcEEeccCCCcchhh--hhhcCCCCCEEeCcCCCCChhHHHH---HHhcCCCCcEEEccCCCCCCchH-HHHH
Q 007082 275 -YIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEM---VACVGANLRNLNLSNTRFSSAGV-GILA 347 (619)
Q Consensus 275 -~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~-~~~~ 347 (619)
+....+|+.|++++|.+..++ .+..+++|++|++++|.+++..+.. +..+ ++|+.|++++|++++... ...+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc-ccCcEEEccCCcccccccchhhh
Confidence 112244555555555555441 2245666666666666666654432 2222 666666666666666432 1223
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (619)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (619)
+.+++|++|++++|+++.. |..+..+++|++|++++|++++.... + .++|++|++++|++++..
T Consensus 384 ~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~-------------~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC-------------I--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp GGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT-------------S--CTTCSEEECCSSCCSCCC
T ss_pred hcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccch-------------h--cCCceEEECCCCChhhhc
Confidence 5566666777766666642 33455666666777766666543221 1 246777888887777542
Q ss_pred cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHH-HHHHH
Q 007082 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI-LQFCK 506 (619)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~ 506 (619)
..+++|++|+|++|+++.++. ...+++|+.|+|++|++++..+..+..+++|+.|++++|+|.|+|.. .++.+
T Consensus 448 ----~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~ 521 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521 (549)
T ss_dssp ----CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred ----ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHH
Confidence 478999999999999997543 46789999999999999999888899999999999999999999984 44445
Q ss_pred hC
Q 007082 507 MH 508 (619)
Q Consensus 507 ~~ 508 (619)
|.
T Consensus 522 ~l 523 (549)
T 2z81_A 522 WL 523 (549)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.9e-45 Score=400.24 Aligned_cols=462 Identities=17% Similarity=0.179 Sum_probs=343.8
Q ss_pred HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (619)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 104 (619)
..++|++..+..||+.++. ++++|||++|. ++...+..|+++++|++|+|++|+ ++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~----------------------~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~ 89 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQ 89 (635)
T ss_dssp TEEECTTSCCSSCCSSSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CEEECCCCCcCccCCCCCc----------------------CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence 3567899999999988766 79999999998 776667789999999999999997 88
Q ss_pred hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHH
Q 007082 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRS 183 (619)
Q Consensus 105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~ 183 (619)
.....+|.++++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+... .+..
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence 777778999999999999999 68877778899999999999999999988777899999999999999998764 4677
Q ss_pred hhcCCCCCEEEccCCccCchhhHhhcCCCCC----CEEecCCCCCCCCC-----------------------------C-
Q 007082 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP-----------------------------N- 229 (619)
Q Consensus 184 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L----~~L~l~~n~l~~l~-----------------------------~- 229 (619)
+..+++|++|++++|.+++..+..|..+.++ ..++++.|.+..++ .
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l 248 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 248 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence 8899999999999999988777666544332 24555555443211 0
Q ss_pred --------------------------------------------------------CCCCcEEEcCCccccccccccCCC
Q 007082 230 --------------------------------------------------------ISSLECLNLSNCTIDSILEGNENK 253 (619)
Q Consensus 230 --------------------------------------------------------l~~L~~L~l~~~~l~~l~~~~~~~ 253 (619)
..+++.+.+.++.+..+.. +...
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~ 327 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 327 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSC
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccc
Confidence 1122233333333322221 2234
Q ss_pred CCccEEeccCccccchhHHH------------------hhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCC
Q 007082 254 APLAKISLAGTTFINEREAF------------------LYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSS 311 (619)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n 311 (619)
..++.|++.+|.+...+... ....+++|+.+++++|.+... ..+..+.+|+++++..+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 56777777777665443210 111334455555555444322 22334445555555544
Q ss_pred CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCc-c
Q 007082 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-F 390 (619)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~ 390 (619)
....... .+... ++|+.+++.++......+...+..+++++.++++.|.+....+..+..++.|+.|++++|++.. .
T Consensus 408 ~~~~~~~-~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 408 GVITMSS-NFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp SEEEECS-CCTTC-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccc-ccccc-ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence 4322111 12222 6677777776655443333334668899999999999988888888899999999999998544 4
Q ss_pred hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
.|. .|..+++|++|+|++|++++..|..|.++++|++|+|++|+++++++..|..+++|+.|+|++|+
T Consensus 486 ~~~------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 486 LPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp ECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred Cch------------hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 555 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhccCCCC-CCCcEEEcCCCccCCHHHHHHHHHhCCC--eeeecccccccCCCCC
Q 007082 471 LTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHPR--IEVWHELSVICPSDQI 526 (619)
Q Consensus 471 l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 526 (619)
+++..|..+..+ ++|+.|++++|||.|+|.+.||.+|... ..+.+.....|..|..
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 612 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence 999999999887 6899999999999999999999888732 1223333455665543
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=379.52 Aligned_cols=449 Identities=18% Similarity=0.179 Sum_probs=327.1
Q ss_pred HHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChH
Q 007082 27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS 106 (619)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 106 (619)
+++++..++.+|..++ +++++|+|++|. +.+..+..|+++++|++|+|++|+ ++..
T Consensus 5 l~ls~n~l~~ip~~~~----------------------~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 60 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS----------------------QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYL 60 (520)
T ss_dssp EECTTSCCSSCCCSCC----------------------TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred EecCCCCccccccccc----------------------ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCc
Confidence 4566777777876543 379999999998 766777889999999999999998 7777
Q ss_pred HHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhh
Q 007082 107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185 (619)
Q Consensus 107 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 185 (619)
.+.+|+++++|++|+|++| .++.. +.. .+++|++|++++|.+++. .+..|+.+++|++|++++|.+.+. .+.
T Consensus 61 ~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~ 133 (520)
T 2z7x_B 61 DISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL 133 (520)
T ss_dssp EGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG
T ss_pred ChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcc
Confidence 7778999999999999999 66643 222 789999999999999874 457899999999999999998873 566
Q ss_pred cCCCC--CEEEccCCcc--CchhhHhhcCCC-CCCEEecCCCCCCC------CCCCCCCcEEEcCCcc-------ccccc
Q 007082 186 VLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-------IDSIL 247 (619)
Q Consensus 186 ~l~~L--~~L~l~~n~i--~~~~~~~~~~~~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~~~-------l~~l~ 247 (619)
.+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.. +..+++|+.+++++|. +....
T Consensus 134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 77777 9999999998 666777666644 22244555555432 2245666666666654 33333
Q ss_pred cccCCCCCccEEeccCccccchhHH--HhhhccCCCcEEeccCCCcchh--hhh-----hcC------------------
Q 007082 248 EGNENKAPLAKISLAGTTFINEREA--FLYIETSLLSFLDVSNSSLSRF--CFL-----TQM------------------ 300 (619)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~-----~~~------------------ 300 (619)
+.+..+++|+.|++.++.+.+.... ......++|++|++++|.+.+. ..+ ..+
T Consensus 214 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~ 293 (520)
T 2z7x_B 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293 (520)
T ss_dssp HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTH
T ss_pred hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchh
Confidence 3444555666666655554432111 0111234555555555554421 111 333
Q ss_pred --------CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCCh--HHHHH
Q 007082 301 --------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISY 370 (619)
Q Consensus 301 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~ 370 (619)
.+|+.|++++|.+..... ... +++|++|++++|++++..+..+ +.+++|++|++++|++++ ..+..
T Consensus 294 ~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 294 YIYEIFSNMNIKNFTVSGTRMVHMLC--PSK-ISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCCC--CSS-CCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhcccccCceeEEEcCCCccccccc--hhh-CCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHH
Confidence 345555555555543221 022 3899999999999998666655 679999999999999997 45577
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
+..+++|++|++++|++++.+|.. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++.+
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKG-----------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI 436 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGC-----------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC
T ss_pred HhhCCCCCEEECCCCcCCcccccc-----------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc
Confidence 899999999999999999855542 478899999999999999877776654 7999999999999964
Q ss_pred hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHH-HHhCCCeeeecccccccCCC
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMHPRIEVWHELSVICPSD 524 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 524 (619)
|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|+|...|+ ..|.............|..|
T Consensus 437 -p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p 510 (520)
T 2z7x_B 437 -PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 510 (520)
T ss_dssp -CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred -chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence 55566999999999999999976555588899999999999999999999988 66654322223334455554
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-42 Score=371.99 Aligned_cols=416 Identities=19% Similarity=0.207 Sum_probs=356.7
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
.+++++|+|++|. +....+..|+++++|++|+|++|. +....+.+|.++++|++|+|++| .+....+..++++++|+
T Consensus 32 ~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 32 PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALK 108 (606)
T ss_dssp CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCC
T ss_pred CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC-cccccChhhhccccccc
Confidence 4579999999998 777777789999999999999997 77777778999999999999999 67777788899999999
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCC--EEecCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS--FLNLAW 221 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~--~L~l~~ 221 (619)
+|++++|.+++..+..++.+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..|..+++|+ .|++++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999999999988777899999999999999999886545566699999999999999998899999999999 899999
Q ss_pred CCCCCCCC----CC----------------------------------------------------CCcEEEcCCccccc
Q 007082 222 TGVTKLPN----IS----------------------------------------------------SLECLNLSNCTIDS 245 (619)
Q Consensus 222 n~l~~l~~----l~----------------------------------------------------~L~~L~l~~~~l~~ 245 (619)
|.+..++. .. +|+.|++++|.+..
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 98875331 11 56778888888887
Q ss_pred cccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHH-HH
Q 007082 246 ILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVE-MV 321 (619)
Q Consensus 246 l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 321 (619)
+++. +..+++|++|++++|.+..++.. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+. .+
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 7766 44889999999999999877764 45789999999999998876 4678899999999999987743333 34
Q ss_pred HhcCCCCcEEEccCCCCCCch--HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchh
Q 007082 322 ACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 399 (619)
Q Consensus 322 ~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 399 (619)
..+ ++|++|++++|.+++.. +..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..
T Consensus 347 ~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----- 419 (606)
T 3t6q_A 347 ENL-ENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS----- 419 (606)
T ss_dssp TTC-TTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-----
T ss_pred hcc-CcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-----
Confidence 455 89999999999998764 3334 67899999999999998888888889999999999999998776542
Q ss_pred hhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch---hHHhhcCCCCCCEEEcCCCccCchhh
Q 007082 400 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSGL 476 (619)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~ 476 (619)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|
T Consensus 420 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 420 ------PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp ------TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred ------hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 488999999999999999988889999999999999999999873 22568889999999999999999988
Q ss_pred ccCCCCCCCcEEEcCCCccCC
Q 007082 477 GSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 477 ~~~~~~~~L~~l~l~~n~~~~ 497 (619)
..+..+++|+.|++++|++..
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCG
T ss_pred hhhccccCCCEEECCCCccCc
Confidence 999999999999999998854
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.3e-42 Score=372.19 Aligned_cols=406 Identities=17% Similarity=0.152 Sum_probs=309.9
Q ss_pred ccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEE
Q 007082 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (619)
Q Consensus 67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 146 (619)
-.+++.+++. ++ .+|..+ .++|++|+|++|. ++.....+|.++++|++|++++| .++...+..|.++++|++|+
T Consensus 13 ~~~~~c~~~~-l~-~ip~~~--~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQK-LS-KVPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSC-CS-SCCTTS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCceEccCCC-cc-cCCCCC--CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeE
Confidence 4678888876 32 223222 2789999999987 77777777999999999999999 77877788899999999999
Q ss_pred ccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCc-hhhHhhcCCCCCCEEecCCCCCC
Q 007082 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT 225 (619)
Q Consensus 147 L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~ 225 (619)
+++|.+++..+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..|.++++|++|++++|.++
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 99999999888899999999999999999988877789999999999999999986 56889999999999999999887
Q ss_pred CCC-----CCCC----CcEEEcCCccccccccccC---------------------------------------------
Q 007082 226 KLP-----NISS----LECLNLSNCTIDSILEGNE--------------------------------------------- 251 (619)
Q Consensus 226 ~l~-----~l~~----L~~L~l~~~~l~~l~~~~~--------------------------------------------- 251 (619)
.++ .+.+ +.+|++++|.+..+++..+
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 543 1111 3355555555544433332
Q ss_pred ----------------------------------------------------------CCCCccEEeccCccccchhHHH
Q 007082 252 ----------------------------------------------------------NKAPLAKISLAGTTFINEREAF 273 (619)
Q Consensus 252 ----------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~ 273 (619)
.+++|++|++++|.+..++.
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~-- 324 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT-- 324 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC--
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc--
Confidence 22233333444443332221
Q ss_pred hhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH--HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC
Q 007082 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351 (619)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 351 (619)
+ .+++|+.|++++|.......+..+++|++|++++|.+++.. +..+..+ ++|++|++++|.+++.. .. +..++
T Consensus 325 -~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~-~~~l~ 399 (606)
T 3vq2_A 325 -L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMS-AN-FMGLE 399 (606)
T ss_dssp -C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEEEC-CC-CTTCT
T ss_pred -C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCccccch-hh-ccCCC
Confidence 1 44555555555553332234556677777777777776542 4455555 78888888888776653 22 25678
Q ss_pred CCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCC-CCcc
Q 007082 352 NLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLF 429 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 429 (619)
+|++|++++|.+.+..+ ..+..+++|++|++++|++++..|. .+.++++|++|++++|.+++ ..|.
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG------------IFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECS
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh------------hhcCCCCCCEEECCCCcCCCcchHH
Confidence 88888888888777665 5677888888888888888877776 78889999999999998887 3678
Q ss_pred cccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
.+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++..
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 88889999999999999999888889999999999999999999888889889999999999998853
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-42 Score=381.08 Aligned_cols=408 Identities=14% Similarity=0.168 Sum_probs=300.8
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEc-CCCCCCChH-------------------------------------
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV-ADCRRVTSS------------------------------------- 106 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~------------------------------------- 106 (619)
.+++.|+|+++. +.+.++..++++++|++|+| ++|. +...
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 479999999998 77888899999999999999 5553 2111
Q ss_pred ---HHHHhh-----------CCCCCCEEeCCC--CCCCChhhHhhhcCCCCCcEEEccCCCCCh----------------
Q 007082 107 ---ALWALT-----------GMTCLKELDLSR--CVKVTDAGMKHLLSISTLEKLWLSETGLTA---------------- 154 (619)
Q Consensus 107 ---~~~~l~-----------~~~~L~~L~L~~--~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~---------------- 154 (619)
....+. ....++.+.+.. | .++. .|..++++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 000011 111222222322 2 3333 45667888888888888888887
Q ss_pred -hHHHHhh--cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-cCc-hhhHhhcCCC-------CCCEEecCCC
Q 007082 155 -DGIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMFP-------RLSFLNLAWT 222 (619)
Q Consensus 155 -~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~-------~L~~L~l~~n 222 (619)
..|..++ ++++|++|+|++|.+.+..|..|.++++|++|++++|. +++ .+|..+..++ +|+.|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 2455555 88888888888888888888888888888888888887 777 6776555444 8888888888
Q ss_pred CCCCCC------CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCC-CcEEeccCCCcchhh
Q 007082 223 GVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC 295 (619)
Q Consensus 223 ~l~~l~------~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~ 295 (619)
.++.+| .+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++.. +..+++ |+.|++++|.++.++
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCc
Confidence 877655 4678888888888888777 666888888888888888866653 456777 888888888887663
Q ss_pred -hhhcC--CCCCEEeCcCCCCChhHHHHH---Hh-cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH
Q 007082 296 -FLTQM--KALEHLDLSSSMIGDDSVEMV---AC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (619)
Q Consensus 296 -~~~~~--~~L~~L~l~~n~l~~~~~~~~---~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 368 (619)
.+..+ ++|+.|++++|.+.+..+... .. .+++|+.|++++|.++..+ ..++..+++|+.|++++|.++..+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCCccCh
Confidence 33333 348889999888876433211 10 0147889999999988664 4444678899999999998885544
Q ss_pred HHhhCC-------CCCcEEEccCCccCcchhccccchhhhhhHHhhc--cCCcCCEEEccCCCCCCCCcccccCCCCCCE
Q 007082 369 SYMSMM-------PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIH 439 (619)
Q Consensus 369 ~~~~~~-------~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 439 (619)
..+... ++|++|+|++|+++ .+|. .+. .+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~------------~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD------------DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG------------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchH------------HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence 433322 38999999999888 4455 455 88999999999999986 6888888999999
Q ss_pred EecCC------CCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 440 LSLRN------ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 440 L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
|+|++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++..
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 99876 778888888889999999999999999 55566554 689999999998744
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-42 Score=377.13 Aligned_cols=409 Identities=13% Similarity=0.180 Sum_probs=317.1
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCC------CC---------hHHHH-----------------Hh-
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR------VT---------SSALW-----------------AL- 111 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------~~---------~~~~~-----------------~l- 111 (619)
.+++.|+|+++. +.+.++..++++++|++|+|++|.. +. ..... .+
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 479999999998 7788888999999999999999852 01 00000 00
Q ss_pred ------------------hCCCCCCEEeCCC-CCCCChhhHhhhcCCCCCcEEEccCCCCChh-----------------
Q 007082 112 ------------------TGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTAD----------------- 155 (619)
Q Consensus 112 ------------------~~~~~L~~L~L~~-~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----------------- 155 (619)
.....++.+.+.. +..++. .+..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 0011222222322 224445 566788888888998888888874
Q ss_pred HHHHhh--cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-cCc-hhhHhhcCC------CCCCEEecCCCCCC
Q 007082 156 GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVT 225 (619)
Q Consensus 156 ~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~------~~L~~L~l~~n~l~ 225 (619)
.|..++ ++++|++|++++|.+.+..|..|.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 566666 88888999988888888888888888889999988887 887 777777665 88888998888887
Q ss_pred CCC------CCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCC-CcEEeccCCCcchhh-h
Q 007082 226 KLP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC-F 296 (619)
Q Consensus 226 ~l~------~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~-~ 296 (619)
.++ .+++|++|++++|.+. .+| .+..+++|++|++++|.+..++.. +..+++ |+.|++++|.++.++ .
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCCcCcccchh
Confidence 665 4678888999998888 777 666888899999999888866654 457788 999999999888663 3
Q ss_pred hhcC--CCCCEEeCcCCCCChhHHHHHH-------hcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH
Q 007082 297 LTQM--KALEHLDLSSSMIGDDSVEMVA-------CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (619)
Q Consensus 297 ~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 367 (619)
+..+ ++|++|++++|.+++..+..+. .. ++|+.|++++|+++..... ++..+++|++|++++|.++..+
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCCCcC
Confidence 3333 4899999999999887666554 33 6899999999999976444 4466899999999999998655
Q ss_pred HHHhhCCC-------CCcEEEccCCccCcchhccccchhhhhhHHhhc--cCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082 368 ISYMSMMP-------SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (619)
Q Consensus 368 ~~~~~~~~-------~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (619)
...+.... +|++|++++|+++ .+|. .+. .+++|++|+|++|++++ +|..+..+++|+
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------------~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD------------DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCG------------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccCh------------hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 44444333 8999999999998 4555 455 89999999999999997 788899999999
Q ss_pred EEec------CCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 439 HLSL------RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 439 ~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
.|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.|
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9999 56778888889999999999999999999 45566554 799999999998876
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-41 Score=370.33 Aligned_cols=386 Identities=13% Similarity=0.141 Sum_probs=318.1
Q ss_pred CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCC------CC--------------------------hhhHhhhc
Q 007082 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------VT--------------------------DAGMKHLL 137 (619)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~------l~--------------------------~~~~~~l~ 137 (619)
.+++.|+|+++. +....+.+++++++|++|+|++|.. .. ...+..+.
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 589999999987 6666677899999999999999832 00 00000000
Q ss_pred -------------------CCCCCcEEEcc--CCCCChhHHHHhhcCCCCCEEEcCCCCCChh-----------------
Q 007082 138 -------------------SISTLEKLWLS--ETGLTADGIALLSSLQNLSVLDLGGLPVTDL----------------- 179 (619)
Q Consensus 138 -------------------~l~~L~~L~L~--~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----------------- 179 (619)
....++.+.+. .|.+++ .|..++++++|++|++++|.+.+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01122222222 356666 577899999999999999999985
Q ss_pred HHHHhh--cCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC-CCC--CC----C------CCCCcEEEcCCcccc
Q 007082 180 VLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTID 244 (619)
Q Consensus 180 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~--l~----~------l~~L~~L~l~~~~l~ 244 (619)
.|..++ ++++|++|++++|.+.+..|..|.++++|++|++++|. ++. +| . +++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 99999999999999999999999999999999999998 874 43 3 389999999999999
Q ss_pred cccc--ccCCCCCccEEeccCcccc-chhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCC-CCEEeCcCCCCChhHHH
Q 007082 245 SILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVE 319 (619)
Q Consensus 245 ~l~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~~ 319 (619)
.+|. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++.+ ..+..+++ |++|++++|.++. .+.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cch
Confidence 9998 8889999999999999999 555 566889999999999999876 56888999 9999999999984 333
Q ss_pred HHHhc-CCCCcEEEccCCCCCCchHHHHHh-------cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcch
Q 007082 320 MVACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (619)
Q Consensus 320 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 391 (619)
.+... .++|+.|++++|.+++..+..+ . .+++|++|++++|.++..++..+..+++|++|++++|+++...
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 33332 1389999999999998766554 3 4679999999999999877777888999999999999998443
Q ss_pred hccccchhhhhhHHhhcc-------CCcCCEEEccCCCCCCCCccccc--CCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082 392 QQVGAETDLVLSLTALQN-------LNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (619)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 462 (619)
+. .+.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+
T Consensus 474 ~~------------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 474 KN------------SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp SS------------SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred HH------------HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 33 3333 349999999999999 6788876 89999999999999999 677888999999
Q ss_pred EEEc------CCCccCchhhccCCCCCCCcEEEcCCCccC
Q 007082 463 NLSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 463 ~L~L------~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 496 (619)
.|+| ++|++.+..|..+..+++|+.|++++|.+.
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 9999 568888899999999999999999999983
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.8e-42 Score=368.16 Aligned_cols=433 Identities=16% Similarity=0.174 Sum_probs=303.8
Q ss_pred HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (619)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 104 (619)
+.+++++..++.+|..++. ++++|+|++|. +....+..|+++++|++|+|++|. ++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~----------------------~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~ 89 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPP----------------------RTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IR 89 (562)
T ss_dssp CEEECTTSCCCSCCTTSCT----------------------TCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CC
T ss_pred cEEEcCCCCCccCCCCCCC----------------------CcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CC
Confidence 4566777778888865443 68889998887 666556678888889999998887 77
Q ss_pred hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhH-HHHhhcCCCCCEEEcCCCCCChhHHHH
Q 007082 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRS 183 (619)
Q Consensus 105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~ 183 (619)
...+.+|.++++|++|+|++| .++.. +.. .+++|++|++++|.+++.. +..|+++++|++|++++|.+.+. .
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~ 162 (562)
T 3a79_B 90 SLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D 162 (562)
T ss_dssp EECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T
T ss_pred cCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c
Confidence 666677888888999999888 55532 222 7888889999888887754 36788888899999888888764 3
Q ss_pred hhcCCCC--CEEEccCCcc--CchhhHhhcCCC-CCCEEecCCCCCCC------CCCCCCCcEEEcCCcc-----ccccc
Q 007082 184 LQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-----IDSIL 247 (619)
Q Consensus 184 ~~~l~~L--~~L~l~~n~i--~~~~~~~~~~~~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~~~-----l~~l~ 247 (619)
+..+++| ++|++++|.+ ++..+..+..+. ..-.++++.|.+.. +..+++|+.+++++|. +....
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence 4444555 8888888887 666666665543 11133445554432 1234556666666653 11222
Q ss_pred cccCCCCCccEEeccCccccchhH--HHhhhccCCCcEEeccCCCcchh-------------------------------
Q 007082 248 EGNENKAPLAKISLAGTTFINERE--AFLYIETSLLSFLDVSNSSLSRF------------------------------- 294 (619)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~------------------------------- 294 (619)
..+...++|+.+++.++.+.+... .......++|++|++++|.+++.
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~ 322 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHH
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChh
Confidence 223344444444444443332110 00011123444444444443311
Q ss_pred --hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChH--HHHH
Q 007082 295 --CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISY 370 (619)
Q Consensus 295 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 370 (619)
..+....+|++|++++|.+..... ... +++|++|++++|.+++..+..+ +.+++|++|++++|++++. .+..
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFIHMVC--PPS-PSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCCC--CSS-CCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhccCcceEEEccCCCcccccC--ccC-CCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhh
Confidence 111122567888888777654321 022 3899999999999998666555 6799999999999999973 4567
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
+..+++|++|++++|++++.+|.. .+..+++|++|++++|++++..|..+. ++|+.|+|++|+++.+
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDR-----------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSC-----------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChh-----------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 889999999999999998855542 588899999999999999877666553 7999999999999975
Q ss_pred hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 506 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 506 (619)
++ .+..+++|++|+|++|++++..+..+..+++|+.+++++|+|.|+|...++.+
T Consensus 466 p~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 466 PK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp CT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred Ch-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 44 45599999999999999997655558889999999999999999999988865
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.2e-41 Score=351.26 Aligned_cols=374 Identities=18% Similarity=0.139 Sum_probs=229.0
Q ss_pred CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L 145 (619)
++++|+|++|. +....+..|+++++|++|++++|.........+|.++++|++|+|++| .++...+..++++++|++|
T Consensus 31 ~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred ccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 46666666655 444444445555555555555554211222333455555555555555 3444444445555555555
Q ss_pred EccCCCCChhHHHH--hhcCCCCCEEEcCCCCCChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC
Q 007082 146 WLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (619)
Q Consensus 146 ~L~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 222 (619)
++++|.+++..+.. |+.+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l----------- 177 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF----------- 177 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG-----------
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc-----------
Confidence 55555554433332 444555555555555544443332 4444555555555544444433333322
Q ss_pred CCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCC
Q 007082 223 GVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA 302 (619)
Q Consensus 223 ~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 302 (619)
...+|+.|++++|.+..++..... . .....+..+++
T Consensus 178 ------~~~~L~~L~l~~n~l~~~~~~~~~----------------~----------------------~~~~~~~~~~~ 213 (455)
T 3v47_A 178 ------QGKHFTLLRLSSITLQDMNEYWLG----------------W----------------------EKCGNPFKNTS 213 (455)
T ss_dssp ------TTCEEEEEECTTCBCTTCSTTCTT----------------H----------------------HHHCCTTTTCE
T ss_pred ------ccccccccccccCcccccchhhcc----------------c----------------------cccccccccce
Confidence 013344444444444433221100 0 00001112233
Q ss_pred CCEEeCcCCCCChhHHHHHHhcC--CCCcEEEccCCCCCC----------chHHHHH-hcCCCCcEEEccCCCCChHHHH
Q 007082 303 LEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNTRFSS----------AGVGILA-GHLPNLEILSLSGTQIDDYAIS 369 (619)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~l~~----------~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 369 (619)
|++|++++|.+++..+..+.... ++|+.|++++|...+ .....+. -.+++|++|++++|.+++..+.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 44444444444433333332211 334444444332211 1111110 1247899999999999998888
Q ss_pred HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (619)
Q Consensus 370 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (619)
.+..+++|++|++++|++++..+. .|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDN------------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred hcccCCCCCEEECCCCcccccChh------------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 899999999999999999988887 79999999999999999998888999999999999999999999
Q ss_pred hhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082 450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (619)
Q Consensus 450 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~ 508 (619)
..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|. +.++.+|.
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 989999999999999999999999888788899999999999999999996 55555554
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-41 Score=361.61 Aligned_cols=388 Identities=19% Similarity=0.206 Sum_probs=326.8
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
+++|++|+|++|. +....+..|+++++|++|+|++|. ++...+.+|.++++|++|++++| .++......++++++|+
T Consensus 51 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK 127 (570)
T ss_dssp CSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCC
T ss_pred CCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc-ccccCCCcccccccccc
Confidence 5689999999997 666666778899999999999987 77666677889999999999998 56655555588899999
Q ss_pred EEEccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCC----CEEEccCCccCchh--------------
Q 007082 144 KLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL----EYLDLWGSQVSNRG-------------- 204 (619)
Q Consensus 144 ~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L----~~L~l~~n~i~~~~-------------- 204 (619)
+|++++|.+++. .+..|+++++|++|++++|.+.+..+..++.+++| ++|++++|.+.+..
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 999999988763 36778899999999999999887766667666666 67777776554332
Q ss_pred -------------------------------------------------------------------hHhhcCCCCCCEE
Q 007082 205 -------------------------------------------------------------------AAVLKMFPRLSFL 217 (619)
Q Consensus 205 -------------------------------------------------------------------~~~~~~~~~L~~L 217 (619)
+..+..+++|+.|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 2334556889999
Q ss_pred ecCCCCCCCCC----CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcch
Q 007082 218 NLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (619)
Q Consensus 218 ~l~~n~l~~l~----~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 293 (619)
++++|.+..++ .+ +|++|++++|.+..+|. ..+++|+.|++++|......+. ..+++|+.|++++|.++.
T Consensus 288 ~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp EEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBE
T ss_pred EecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCc
Confidence 99999888765 45 99999999999998876 4789999999999988765543 578999999999999876
Q ss_pred h----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH
Q 007082 294 F----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369 (619)
Q Consensus 294 ~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 369 (619)
. ..+..+++|++|++++|.+.+.... +..+ ++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+.
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccccccCccCEEECCCCcccccccc-cccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 5 5678899999999999998875544 4455 89999999999988765533447799999999999999998888
Q ss_pred HhhCCCCCcEEEccCCccC-cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082 370 YMSMMPSLKFIDISNTDIK-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (619)
Q Consensus 370 ~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (619)
.+..+++|++|++++|.++ +.+|. .+..+++|++|++++|++++..|..|..+++|++|++++|+++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 8999999999999999997 56776 7899999999999999999888999999999999999999999
Q ss_pred chhHHhhcCCCCCCEEEcCCCccCch
Q 007082 449 DVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 449 ~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
+.++..|..+++|+.|++++|++++.
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCHHHhhcccCCcEEEecCCcccCC
Confidence 99888899999999999999999864
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-40 Score=362.93 Aligned_cols=416 Identities=18% Similarity=0.186 Sum_probs=285.5
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
.+++++|+|++|. +....+..|+++++|++|+|++|. ++...+.+|.++++|++|+|++| .++......|+++++|+
T Consensus 24 ~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred CCCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCC
Confidence 3689999999998 666666679999999999999987 77777778899999999999999 67766666799999999
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhc--CCCCCCEEecCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK--MFPRLSFLNLAW 221 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~ 221 (619)
+|++++|.+++..+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999999888777899999999999999999988888889999999999999999988877665 568999999999
Q ss_pred CCCCCCCC--------------------------------CCCCcEEEcCCccccccccccC-CC--CCccEEeccCccc
Q 007082 222 TGVTKLPN--------------------------------ISSLECLNLSNCTIDSILEGNE-NK--APLAKISLAGTTF 266 (619)
Q Consensus 222 n~l~~l~~--------------------------------l~~L~~L~l~~~~l~~l~~~~~-~~--~~L~~L~l~~~~~ 266 (619)
|.+..++. .++|++|++++|.+..+++..+ .+ ++|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 98875431 2578888888888886654433 44 4599999999999
Q ss_pred cchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCc---------------------------------CC
Q 007082 267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS---------------------------------SS 311 (619)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~---------------------------------~n 311 (619)
.+.++. .+..+++|++|++++|.+.+. ..+..+++|++|+++ +|
T Consensus 261 ~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 261 NVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred CccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 877643 356789999999999988665 344555555555554 44
Q ss_pred CCChhHHHHHHhcCCCCcEEEccCCCCCC--chHHHHHh-cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082 312 MIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (619)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~ 388 (619)
.+++..+..+..+ ++|++|++++|.+.. .....+.. ..++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 340 ~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 340 DIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred ccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 4444333333333 444444444443211 10000000 0134555555555666655666667777777777777776
Q ss_pred cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC--------------------------CcccccCCCCCCEEec
Q 007082 389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA--------------------------TLFPLSTFKELIHLSL 442 (619)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------------~~~~~~~l~~L~~L~L 442 (619)
+.++.. .|.++++|++|++++|++.+. .|..|..+++|+.|++
T Consensus 419 ~~~~~~-----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 419 QELTGQ-----------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EECCSG-----------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred cccCcc-----------cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 554421 455555555555555554433 3444555555555555
Q ss_pred CCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc--------cCCCCCCCcEEEcCCCcc
Q 007082 443 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG--------SFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 443 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~l~l~~n~~ 495 (619)
++|+++++.+..|..+++|++|++++|++++.... .+..+++|+.|++++|.+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 55555555555555555555555555555543211 134445555555555554
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.2e-40 Score=361.45 Aligned_cols=385 Identities=15% Similarity=0.153 Sum_probs=312.6
Q ss_pred CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeC-CCCCCCChhhH-----------------------------------
Q 007082 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDL-SRCVKVTDAGM----------------------------------- 133 (619)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~l~~~~~----------------------------------- 133 (619)
.+++.|+|+++. +....+.+|+++++|++|+| ++| .+.+..+
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 589999999987 77677788999999999999 665 3222100
Q ss_pred -----hhh-----------cCCCCCcEEEccC--CCCChhHHHHhhcCCCCCEEEcCCCCCCh-----------------
Q 007082 134 -----KHL-----------LSISTLEKLWLSE--TGLTADGIALLSSLQNLSVLDLGGLPVTD----------------- 178 (619)
Q Consensus 134 -----~~l-----------~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~L~~n~~~~----------------- 178 (619)
..+ .....++.+.+.. |.+++ .|..|+++++|++|+|++|.+.+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 000 0112233333332 55666 46679999999999999999998
Q ss_pred hHHHHhh--cCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC-CCC--C-----------CCCCCCcEEEcCCcc
Q 007082 179 LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--L-----------PNISSLECLNLSNCT 242 (619)
Q Consensus 179 ~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~--l-----------~~l~~L~~L~l~~~~ 242 (619)
.+|..++ ++++|++|++++|.+.+..|..|.++++|+.|++++|. ++. + ..+++|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 3778877 99999999999999999999999999999999999998 764 2 245699999999999
Q ss_pred cccccc--ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCC-CCEEeCcCCCCChhHH
Q 007082 243 IDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSV 318 (619)
Q Consensus 243 l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~ 318 (619)
+..+|. .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++ |++|++++|.++. .+
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp 635 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IP 635 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cc
Confidence 999998 8889999999999999999666 567899999999999999866 46888898 9999999999984 33
Q ss_pred HHHHhc-CCCCcEEEccCCCCCCchHHHH--Hh--cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhc
Q 007082 319 EMVACV-GANLRNLNLSNTRFSSAGVGIL--AG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ 393 (619)
Q Consensus 319 ~~~~~~-~~~L~~L~L~~n~l~~~~~~~~--~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 393 (619)
..+... .++|+.|++++|++.+..+... .+ .+++|+.|++++|.++..+...+..+++|++|+|++|+++...+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 333322 1349999999999987533110 01 245899999999999987777777999999999999999844333
Q ss_pred cccchhhhhhHHhhc-------cCCcCCEEEccCCCCCCCCccccc--CCCCCCEEecCCCCCCchhHHhhcCCCCCCEE
Q 007082 394 VGAETDLVLSLTALQ-------NLNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (619)
Q Consensus 394 ~~~~~~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 464 (619)
.+. ++++|++|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 716 ------------~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 716 ------------SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp ------------SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred ------------HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 222 3449999999999999 6788886 89999999999999999 57788899999999
Q ss_pred EcCC------CccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 465 SIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 465 ~L~~------n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
+|++ |++.+..|..+..+++|+.|++++|++
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 9976 888888999999999999999999998
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=375.63 Aligned_cols=420 Identities=18% Similarity=0.159 Sum_probs=301.3
Q ss_pred cEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEc
Q 007082 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (619)
Q Consensus 68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L 147 (619)
+..|.++++ ++. +|. -.++|++|+|++|. ++...+.+|.++++|++|+|++|.......+..|.++++|++|+|
T Consensus 7 ~~~dcs~~~-L~~-vP~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCN-LTQ-VPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCC-SSC-CCS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCC-CCC-CCC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 467777776 322 232 45799999999987 777767789999999999999996555555788999999999999
Q ss_pred cCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHH--hhcCCCCCEEEccCCccCchhh-HhhcCCCCCCEEecCCCCC
Q 007082 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS--LQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l 224 (619)
++|.+.+..+..|+++++|++|+|++|.+.+..+.. |.++++|++|++++|.+.+..+ ..|.++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999999988889999999999999999998865554 8899999999999999987655 5799999999999999998
Q ss_pred CCCC-----CC--CCCcEEEcCCccccc-cccccCCCCC------ccEEeccCccccchhHHH-----------------
Q 007082 225 TKLP-----NI--SSLECLNLSNCTIDS-ILEGNENKAP------LAKISLAGTTFINEREAF----------------- 273 (619)
Q Consensus 225 ~~l~-----~l--~~L~~L~l~~~~l~~-l~~~~~~~~~------L~~L~l~~~~~~~~~~~~----------------- 273 (619)
+.+. .+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+....+..
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 7543 23 678888888887764 3333334433 788888877554321110
Q ss_pred ------------------hhh--ccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEE
Q 007082 274 ------------------LYI--ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (619)
Q Consensus 274 ------------------~~~--~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 331 (619)
.+. ..++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+ ++|++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L 319 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVL 319 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEE
Confidence 011 125788888888887765 456778888888888888877766666665 788888
Q ss_pred EccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchh------------------c
Q 007082 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ------------------Q 393 (619)
Q Consensus 332 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~------------------~ 393 (619)
++++|.+++..+..+ +.+++|++|++++|.+....+..|..+++|++|++++|.+++... .
T Consensus 320 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 320 NLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred ECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 888888777655444 567888888888888877766667778888888888877664311 0
Q ss_pred ccc-------c---hhhhhhHHhhccCCcCCEEEccCCCCCCCCc------------------------------ccccC
Q 007082 394 VGA-------E---TDLVLSLTALQNLNHLERLNLEQTQVSDATL------------------------------FPLST 433 (619)
Q Consensus 394 ~~~-------~---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------~~~~~ 433 (619)
... . ...+.....+..+++|++|+|++|++++..+ ..|..
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 000 0 0000112234567777777777777764322 23455
Q ss_pred CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
+++|+.|+|++|.+++.++..|..+++|+.|+|++|++++..+..+. ++|+.|++++|.+..
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 56666666666666666666677777777777777777766555544 677777777776644
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-38 Score=338.03 Aligned_cols=404 Identities=17% Similarity=0.164 Sum_probs=269.6
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
|+.....|.+++. ++ .+|.. -.++|++|+|++|. ++...+.+|.++++|++|++++| .++...+..|+++++|+
T Consensus 4 C~~~~~c~~~~~~-l~-~ip~~--~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRS-FT-SIPSG--LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLE 77 (549)
T ss_dssp ECTTSEEECTTSC-CS-SCCSC--CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCCceEECCCCc-cc-ccccc--CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCC
Confidence 3344456777765 32 22322 23799999999998 77766677899999999999999 77877778899999999
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHHhhcCCCCCEEEccCCc-cCchhhHhhcCCCCCCEEecCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAW 221 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~ 221 (619)
+|++++|.+++..+..|+.+++|++|++++|.+.+. .+..+.++++|++|++++|. +....+..|..+++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999999999888899999999999999998864 45678999999999999998 5555557899999999999999
Q ss_pred CCCCC-----CCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchh--HHHhhhccCCCcEEeccCCCcch
Q 007082 222 TGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSR 293 (619)
Q Consensus 222 n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~ 293 (619)
|.++. +..+++|++|++++|.+..++..+. .+++|+.|++++|.+.+.+ +......+++|+.|++++|.+++
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 99874 4578899999999999988887765 7899999999999988753 11122356788888888887754
Q ss_pred h------hhhhcCCCCCEEeCcCCCCCh------------------------------hH-----HHHHHhcCCCCcEEE
Q 007082 294 F------CFLTQMKALEHLDLSSSMIGD------------------------------DS-----VEMVACVGANLRNLN 332 (619)
Q Consensus 294 ~------~~~~~~~~L~~L~l~~n~l~~------------------------------~~-----~~~~~~~~~~L~~L~ 332 (619)
. ..+..+++|+.+++++|.+.+ .. ...+.. .++|+.|+
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~-~~~L~~L~ 316 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRIT 316 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH-STTCCEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh-cccceEEE
Confidence 3 122333444444444433211 00 001111 15566666
Q ss_pred ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH---hhCCCCCcEEEccCCccCcchh--ccccchhhhhhHHhh
Q 007082 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNTDIKGFIQ--QVGAETDLVLSLTAL 407 (619)
Q Consensus 333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~L~~n~~~~~~~--~~~~~~~~~~~~~~~ 407 (619)
+++|++...+. .+++.+++|++|++++|.+++..+.. ++.+++|++|++++|++++..+ . .+
T Consensus 317 l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------~~ 383 (549)
T 2z81_A 317 VENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE------------IL 383 (549)
T ss_dssp EESSCCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH------------HG
T ss_pred eccCccccCCH-HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh------------hh
Confidence 66666654432 23244666666666666666554322 4456666666666666655432 2 35
Q ss_pred ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcE
Q 007082 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 487 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 487 (619)
..+++|++|++++|+++ .+|..+..+++|++|++++|.++++... + .++|+.|++++|++++.. ..+++|+.
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~ 455 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-I--PQTLEVLDVSNNNLDSFS----LFLPRLQE 455 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-S--CTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-h--cCCceEEECCCCChhhhc----ccCChhcE
Confidence 56666666666666665 3455555556666666666655543211 1 134444444444444321 23344444
Q ss_pred EEcCCCcc
Q 007082 488 LDLHGGWL 495 (619)
Q Consensus 488 l~l~~n~~ 495 (619)
|++++|.+
T Consensus 456 L~Ls~N~l 463 (549)
T 2z81_A 456 LYISRNKL 463 (549)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 44444444
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.2e-39 Score=341.76 Aligned_cols=404 Identities=16% Similarity=0.134 Sum_probs=324.2
Q ss_pred HHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCC
Q 007082 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV 103 (619)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 103 (619)
++.+++++..+..+++.... ..++|++|+|++|. +.+..+..|+++++|++|+|++|+ +
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l 81 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDIL-------------------SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-L 81 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHT-------------------TCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-C
T ss_pred ccEEECCCCcccccChhhcc-------------------ccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-e
Confidence 45566677777777643221 15689999999998 777778889999999999999997 6
Q ss_pred ChHHHHHhhCCCCCCEEeCCCCCCCCh-hhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCC--CEEEcCCCCC--Ch
Q 007082 104 TSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL--SVLDLGGLPV--TD 178 (619)
Q Consensus 104 ~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~n~~--~~ 178 (619)
+.... . .+++|++|++++| .++. ..+..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+
T Consensus 82 ~~lp~--~-~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 VKISC--H-PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CEEEC--C-CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eecCc--c-ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccc
Confidence 64322 2 7899999999999 5555 3457899999999999999999873 47778888 9999999988 55
Q ss_pred hHHHHhhc--------------------------CCCCCEEEccCCc-------cCchhhHhhcCCCCCCEEecCCCCCC
Q 007082 179 LVLRSLQV--------------------------LTKLEYLDLWGSQ-------VSNRGAAVLKMFPRLSFLNLAWTGVT 225 (619)
Q Consensus 179 ~~~~~~~~--------------------------l~~L~~L~l~~n~-------i~~~~~~~~~~~~~L~~L~l~~n~l~ 225 (619)
..|..+.. +++|+.|++++|. +.+..+ .+..+++|+.|++++|.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 55555554 5677777777765 444444 6778888888888877665
Q ss_pred CC-----C---CCCCCcEEEcCCcccc-cccccc-----CCCCCccEEeccCccccchhHHHh--hhccCCCcEEeccCC
Q 007082 226 KL-----P---NISSLECLNLSNCTID-SILEGN-----ENKAPLAKISLAGTTFINEREAFL--YIETSLLSFLDVSNS 289 (619)
Q Consensus 226 ~l-----~---~l~~L~~L~l~~~~l~-~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n 289 (619)
.- . ..++|++|++++|.+. .+|..+ ..+++|+.+++++|.+ .++.... .....+|+.|++++|
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCC
Confidence 31 1 2458999999999998 788888 7889999999999988 5552211 112367999999999
Q ss_pred CcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCch--HHHHHhcCCCCcEEEccCCCCCh-H
Q 007082 290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDD-Y 366 (619)
Q Consensus 290 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~-~ 366 (619)
.+........+++|++|++++|.+++..+..+..+ ++|++|++++|++++.. +..+ +.+++|++|++++|.+++ .
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCG
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCccc
Confidence 99877655789999999999999998777777666 99999999999999842 3444 779999999999999998 5
Q ss_pred HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082 367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (619)
Q Consensus 367 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (619)
+...+..+++|++|++++|++++..+. .+. ++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFR------------CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGG------------SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ccchhccCccCCEEECcCCCCCcchhh------------hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 544578899999999999999887665 332 79999999999999 677777799999999999999
Q ss_pred CCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 447 LTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 447 l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
++.+++..+..+++|++|++++|+++..
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCHHHhccCCcccEEECcCCCCccc
Confidence 9987666699999999999999999864
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-35 Score=312.79 Aligned_cols=342 Identities=22% Similarity=0.316 Sum_probs=194.1
Q ss_pred CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCE
Q 007082 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (619)
Q Consensus 89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 168 (619)
+++|+.|++.++. +.. +..+..+++|++|++++| .+++..+ +.++++|++|++++|.+.+..+ ++.+++|++
T Consensus 45 l~~l~~L~l~~~~-i~~--l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKS--IDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCC-Ccc--CcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3456666666554 332 123555666666666666 3443322 5566666666666666665543 666666666
Q ss_pred EEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC---CCCCCCCCcEEEcCCccccc
Q 007082 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDS 245 (619)
Q Consensus 169 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---~l~~l~~L~~L~l~~~~l~~ 245 (619)
|++++|.+.+..+ +.++++|++|++++|.+.+.. .+..+++|+.|+++ +.+. .+..+++|++|++++|.+..
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCC
Confidence 6666666665532 666666666666666665432 35566666666664 2222 23355566666666666555
Q ss_pred cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325 (619)
Q Consensus 246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 325 (619)
++. +..+++|++|++++|.+.+.++ +..+++|+.|++++|.++..+.+..+++|++|++++|.+++..+ +..+
T Consensus 192 ~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l- 264 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL- 264 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-
T ss_pred Chh-hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-
Confidence 432 4456666666666666655443 23456666666666666555555666666666666666655433 3333
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------------- 326 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------------- 326 (466)
T ss_dssp TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-------------
T ss_pred CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-------------
Confidence 566666666666655433 2445666666666666555433 4555666666666666554432
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 34555666666666655543 345555666666666666655544 5555666666666665554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=311.18 Aligned_cols=342 Identities=20% Similarity=0.297 Sum_probs=299.0
Q ss_pred CCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEE
Q 007082 114 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193 (619)
Q Consensus 114 ~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 193 (619)
+++|++|+++++ .+.. ...+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 468999999998 4544 3357789999999999999998765 8999999999999999988765 8999999999
Q ss_pred EccCCccCchhhHhhcCCCCCCEEecCCCCCCCC---CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchh
Q 007082 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270 (619)
Q Consensus 194 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l---~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 270 (619)
++++|.+.+..+ +..+++|++|++++|.+..+ ..+++|++|+++ +.+..+++ +..+++|+.|++++|.+...+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh
Confidence 999999987654 89999999999999988764 478999999996 45555544 678999999999999998875
Q ss_pred HHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082 271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350 (619)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 350 (619)
. +..+++|++|++++|.+.....+..+++|++|++++|.+++.. .+..+ ++|+.|++++|.+++..+ +..+
T Consensus 194 ~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---~~~l 264 (466)
T 1o6v_A 194 V---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP---LSGL 264 (466)
T ss_dssp G---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG---GTTC
T ss_pred h---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh---hhcC
Confidence 3 5688999999999999998877889999999999999998752 45555 999999999999998765 3679
Q ss_pred CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 430 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 430 (619)
++|++|++++|.+++..+ +..+++|++|++++|++.+.. .+..+++|++|++++|++++..+
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------PISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------GGGGCTTCSEEECCSSCCSCCGG--
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------hhcCCCCCCEEECcCCcCCCchh--
Confidence 999999999999998765 889999999999999998754 36789999999999999998765
Q ss_pred ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++..
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78899999999999999986 478899999999999999999876 7889999999999999854
No 26
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=5.8e-35 Score=317.71 Aligned_cols=452 Identities=14% Similarity=0.102 Sum_probs=318.7
Q ss_pred HHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCC-------------
Q 007082 13 CIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVD------------- 79 (619)
Q Consensus 13 c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~------------- 79 (619)
.+..||++|..+..+......+.......+.. .+. ..+++++|+|+++..+.
T Consensus 36 ~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~--------------~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 100 (592)
T 3ogk_B 36 SASLVCRRWFKIDSETREHVTMALCYTATPDR--------------LSR-RFPNLRSLKLKGKPRAAMFNLIPENWGGYV 100 (592)
T ss_dssp HHTTSCHHHHHHHHHHCCEEEESCGGGSCHHH--------------HHH-HCTTCSEEEEECSCGGGGGTCSCTTSCCBC
T ss_pred HHHHHhHHHHHhhhccccEEEEeeccccChHH--------------HHH-hCCCCeEEEecCCcchhhcccccccccccc
Confidence 44568899988866654443332221111121 111 24679999998754211
Q ss_pred h-HHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCC-CCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCCCCChh
Q 007082 80 A-EWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD 155 (619)
Q Consensus 80 ~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~-L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~ 155 (619)
. .+...+..+++|++|+|++|. +++..+..++. +++ |++|+|++|..++......+. ++++|++|++++|.+++.
T Consensus 101 ~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 101 TPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence 1 234445589999999999996 88888877775 455 999999999655555554443 799999999999987554
Q ss_pred ----HHHHhhcCCCCCEEEcCCCCCC----hhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC---
Q 007082 156 ----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV--- 224 (619)
Q Consensus 156 ----~~~~~~~l~~L~~L~L~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--- 224 (619)
....+..+++|++|++++|.+. +..+..+.++++|++|++++|.+.+ .+..+..+++|+.|+++....
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc
Confidence 3445678999999999999987 4455666789999999999998876 567899999999999984322
Q ss_pred -----CCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hh
Q 007082 225 -----TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CF 296 (619)
Q Consensus 225 -----~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~ 296 (619)
..+..+++|+.|+++++....++..+..+++|++|++++|.+...........+++|+.|+++ +.+... ..
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 245678899999998877777877777888999999999886654443335678888888888 444332 34
Q ss_pred hhcCCCCCEEeCc-----------CCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc----CC
Q 007082 297 LTQMKALEHLDLS-----------SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS----GT 361 (619)
Q Consensus 297 ~~~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~----~n 361 (619)
...+++|++|+++ .+.+++.....+...+++|++|+++.+.+++..+..+...+++|+.|+++ .|
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 4677888888888 46777776666555558888888888888887777775568888888886 56
Q ss_pred CCChH-----HHHHhhCCCCCcEEEccCCc--cCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC-CcccccC
Q 007082 362 QIDDY-----AISYMSMMPSLKFIDISNTD--IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLST 433 (619)
Q Consensus 362 ~l~~~-----~~~~~~~~~~L~~L~L~~n~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 433 (619)
.+++. .+..+..+++|++|++++|. +++..... ....+++|++|++++|++++. .+..+..
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~-----------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY-----------IGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH-----------HHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH-----------HHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 67652 44456678888888887544 44443330 223478888888888887753 3334467
Q ss_pred CCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCchhhccCC-CCCCCcEEEcCCC
Q 007082 434 FKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGG 493 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~n 493 (619)
+++|++|+|++|.+++.. +..+..+++|++|+|++|++++.....+. .++.+....+..+
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 788888888888876653 33445688888888888888776444443 3466655555443
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=315.37 Aligned_cols=313 Identities=19% Similarity=0.186 Sum_probs=219.6
Q ss_pred CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcC
Q 007082 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLS 239 (619)
Q Consensus 165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~ 239 (619)
+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++ .+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 3444444444444444444444444444444444444444444444444444444444333222 23444444444
Q ss_pred Ccccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHH
Q 007082 240 NCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318 (619)
Q Consensus 240 ~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 318 (619)
+|.+..+++ .+..+++|++|++++|.+..+.+ ..+..+++|++|++++|.+++...
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----------------------RAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----------------------TSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CCccccCChhHccccccCCEEECCCCccceeCh-----------------------hhccCCCCCCEEECCCCcCcccCh
Confidence 444443322 22234444444444443332221 245667778888888888777766
Q ss_pred HHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccch
Q 007082 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET 398 (619)
Q Consensus 319 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 398 (619)
..+..+ ++|+.|++++|.+.+.....+ ..+++|++|++++|.+.+..+.......+|++|++++|++++..+.
T Consensus 170 ~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----- 242 (477)
T 2id5_A 170 EALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL----- 242 (477)
T ss_dssp HHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH-----
T ss_pred hHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH-----
Confidence 667666 888888888888877655444 6688999999999876665555555566999999999999876655
Q ss_pred hhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhcc
Q 007082 399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 478 (619)
Q Consensus 399 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 478 (619)
.+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++++..+..
T Consensus 243 -------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 243 -------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp -------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred -------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 7899999999999999999888888999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082 479 FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 514 (619)
Q Consensus 479 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 514 (619)
|..+++|+.|++++|+|.|+|.+.|+.++.......
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~ 351 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN 351 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred cCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence 899999999999999999999999998876554443
No 28
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-34 Score=303.68 Aligned_cols=392 Identities=22% Similarity=0.281 Sum_probs=265.4
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHH----HHHhhCCCCCCEEeCCCCCCCChhhHhhhc-CC
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----LWALTGMTCLKELDLSRCVKVTDAGMKHLL-SI 139 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~-~l 139 (619)
+++++|||+++...+..+...+..+++|++|++++|. ++... ...+..+++|++|++++| .+++..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 4688999988883334455558888899999999887 66543 334667788888888888 56665555444 34
Q ss_pred C----CCcEEEccCCCCCh----hHHHHhhcCCCCCEEEcCCCCCChhHHHHhhc-----CCCCCEEEccCCccCchh--
Q 007082 140 S----TLEKLWLSETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-----LTKLEYLDLWGSQVSNRG-- 204 (619)
Q Consensus 140 ~----~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~i~~~~-- 204 (619)
+ +|++|++++|.+++ ..+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 68888888888774 33566777788888888888776655544432 456777777777766533
Q ss_pred --hHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccc-----cccccCCCCCccEEeccCccccchhHHHhhhc
Q 007082 205 --AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIE 277 (619)
Q Consensus 205 --~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 277 (619)
+..+..+++ |++|++++|.+.. +...+. ..
T Consensus 161 ~l~~~l~~~~~-------------------L~~L~L~~n~i~~~~~~~l~~~l~------------------------~~ 197 (461)
T 1z7x_W 161 PLASVLRAKPD-------------------FKELTVSNNDINEAGVRVLCQGLK------------------------DS 197 (461)
T ss_dssp HHHHHHHHCTT-------------------CCEEECCSSBCHHHHHHHHHHHHH------------------------HS
T ss_pred HHHHHHhhCCC-------------------CCEEECcCCCcchHHHHHHHHHHh------------------------cC
Confidence 333333333 3333333333331 111111 12
Q ss_pred cCCCcEEeccCCCcchh------hhhhcCCCCCEEeCcCCCCChhHHHHHHh----cCCCCcEEEccCCCCCCchHH---
Q 007082 278 TSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAGVG--- 344 (619)
Q Consensus 278 ~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~--- 344 (619)
.++|++|++++|.++.. ..+..+++|++|++++|.+++.....+.. .+++|++|++++|.+++....
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 33555555555555441 34567788888888888887765544432 237888888888888875422
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHhhC-----CCCCcEEEccCCccCcc----hhccccchhhhhhHHhhccCCcCCE
Q 007082 345 ILAGHLPNLEILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGF----IQQVGAETDLVLSLTALQNLNHLER 415 (619)
Q Consensus 345 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~ 415 (619)
..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++. .+..+++|++
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~~~~L~~ 345 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS------------VLAQNRFLLE 345 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH------------HHHHCSSCCE
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH------------HHhhCCCccE
Confidence 22245888999999999888766555542 36899999999988765 333 5778899999
Q ss_pred EEccCCCCCCCCcccccC-----CCCCCEEecCCCCCCc----hhHHhhcCCCCCCEEEcCCCccCchhhccCC-----C
Q 007082 416 LNLEQTQVSDATLFPLST-----FKELIHLSLRNASLTD----VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK-----P 481 (619)
Q Consensus 416 L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~ 481 (619)
|++++|.+++..+..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|++++.....+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 999999887665555443 6799999999999996 6777888899999999999999876443322 2
Q ss_pred CCCCcEEEcCCCccCCH--HHHHHHHHhCCCeee
Q 007082 482 PRSLKLLDLHGGWLLTE--DAILQFCKMHPRIEV 513 (619)
Q Consensus 482 ~~~L~~l~l~~n~~~~~--~~~~~~~~~~~~~~~ 513 (619)
..+|+.|++.++.+... ..+..+.+..|.+++
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i 459 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 459 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred CcchhheeecccccCHHHHHHHHHHhccCCCcEe
Confidence 35799999999988653 345566677777665
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=318.78 Aligned_cols=401 Identities=15% Similarity=0.141 Sum_probs=309.5
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
|...+.+|++++. ++. +|..+ .++|++|++++|. ++...+.+|.++++|++|+|++| .++...+..|.++++|+
T Consensus 30 ~~~~~~l~ls~~~-L~~-ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRN-LTH-VPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSC-CCS-CCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCC-Ccc-CCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence 3456899999998 443 44332 3799999999988 77766678999999999999999 78887788899999999
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC--CEEecC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLA 220 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~ 220 (619)
+|++++|.++..+.. .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++. .+..+++| +.|+++
T Consensus 104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 999999999865433 789999999999999874 357899999999999999998864 34455555 999999
Q ss_pred CCCC--CCCC--CCCCCc----EEEcCCccccc-ccc-ccCCCCCccEEeccCccc-----cchhHHHhhhccCCCcEEe
Q 007082 221 WTGV--TKLP--NISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTTF-----INEREAFLYIETSLLSFLD 285 (619)
Q Consensus 221 ~n~l--~~l~--~l~~L~----~L~l~~~~l~~-l~~-~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~ 285 (619)
+|.+ +... .+..+. .+++++|.+.. ++. .+..+++|+.+++++|.. .+... .+..++.|+.++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEE
Confidence 9988 4322 222222 45677777663 332 233788999999999852 22222 345789999999
Q ss_pred ccCCCcchh-----hhhhcCCCCCEEeCcCCCCChhHH-------------------------------HHHHhcCCCCc
Q 007082 286 VSNSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSV-------------------------------EMVACVGANLR 329 (619)
Q Consensus 286 l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~~~~~-------------------------------~~~~~~~~~L~ 329 (619)
+.++.+... ......++|++|++++|.+++..+ ..+... .+|+
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~-~~L~ 334 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIK 334 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT-CCCS
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc-Ccce
Confidence 988877653 223344689999999887764222 112122 5688
Q ss_pred EEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc--hhccccchhhhhhHHhh
Q 007082 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF--IQQVGAETDLVLSLTAL 407 (619)
Q Consensus 330 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~~~~~~ 407 (619)
+|++++|.+..... .+.+++|++|++++|.+++..+..+..+++|++|++++|++++. .|. .+
T Consensus 335 ~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------~~ 399 (562)
T 3a79_B 335 MLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL------------MT 399 (562)
T ss_dssp EEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH------------TT
T ss_pred EEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh------------hh
Confidence 99999888866431 14689999999999999998888899999999999999999874 344 68
Q ss_pred ccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCc
Q 007082 408 QNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 486 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 486 (619)
..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..+. ++|++|++++|+++.. |..+..+++|+
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~ 476 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQ 476 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCS
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCC
Confidence 899999999999999998455 4588899999999999999987665543 7999999999999954 55555899999
Q ss_pred EEEcCCCccCC
Q 007082 487 LLDLHGGWLLT 497 (619)
Q Consensus 487 ~l~l~~n~~~~ 497 (619)
.|++++|.+..
T Consensus 477 ~L~L~~N~l~~ 487 (562)
T 3a79_B 477 ELNVASNQLKS 487 (562)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCCCCC
Confidence 99999999853
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-35 Score=307.14 Aligned_cols=371 Identities=18% Similarity=0.136 Sum_probs=270.2
Q ss_pred CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCC-------------CCEEeCCCCCCCChh
Q 007082 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTC-------------LKELDLSRCVKVTDA 131 (619)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~-------------L~~L~L~~~~~l~~~ 131 (619)
+++++|++++|. + +.+|..++++++|++|++++|. +....+.+++.+++ +++|++++| .++..
T Consensus 11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 579999999998 5 7889999999999999999876 44444445555554 699999999 45542
Q ss_pred hHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCC
Q 007082 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211 (619)
Q Consensus 132 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 211 (619)
. . ..++|++|++++|.+++.+ ...++|++|++++|.+.+.. . ..++|++|++++|.+++ .| .|..+
T Consensus 87 p-~---~~~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l~--~--~~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 87 P-E---LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALS--D--LPPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp C-S---CCTTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC--S--CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C-C---CcCCCCEEEccCCcCCccc----cccCCCcEEECCCCccCccc--C--CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 1 1 2479999999999998743 23589999999999987642 1 12699999999999987 55 59999
Q ss_pred CCCCEEecCCCCCCCCCC-CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082 212 PRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (619)
Q Consensus 212 ~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 290 (619)
++|++|++++|.++.++. .++|++|++++|.+..+| .+..+++|+.|++++|.+.+++.. .++|++|++++|.
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI 226 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc
Confidence 999999999999998874 568999999999999987 577999999999999999886542 3689999999999
Q ss_pred cchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (619)
Q Consensus 291 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 370 (619)
++.++.+..+++|++|++++|.+++... ..++|+.|++++|++++.. ..+++|++|++++|.+++..
T Consensus 227 l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~--- 293 (454)
T 1jl5_A 227 LEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS--- 293 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEES---
T ss_pred CCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCccc---
Confidence 9988778999999999999999886331 2389999999999998853 23689999999999998742
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
...++|++|++++|++++.. . ..++|++|++++|++++ +|.. +++|++|++++|+++++
T Consensus 294 -~~~~~L~~L~l~~N~l~~i~-~---------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 294 -ELPPNLYYLNASSNEIRSLC-D---------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV 352 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEEC-C---------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred -CcCCcCCEEECcCCcCCccc-C---------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc
Confidence 12379999999999997632 1 12589999999999986 4543 58999999999999975
Q ss_pred hHHhhcCCCCCCEEEcCCCccCc--hhhccCCCC-------------CCCcEEEcCCCccCC
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPP-------------RSLKLLDLHGGWLLT 497 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~l~l~~n~~~~ 497 (619)
+. .+++|++|++++|++++ ..|..+..+ ++|+.|++++|++.+
T Consensus 353 p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 353 PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 43 47899999999999998 667777666 789999999999864
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-33 Score=281.61 Aligned_cols=306 Identities=20% Similarity=0.291 Sum_probs=218.7
Q ss_pred cCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216 (619)
Q Consensus 137 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 216 (619)
..+++|++|+++++.+.... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 34667777777777766542 36667777777777777766543 66777777777777766653 23555555555
Q ss_pred EecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhh
Q 007082 217 LNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296 (619)
Q Consensus 217 L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 296 (619)
|++++|.+. .++. +..+++|+.|++++|......+. +..+++|++|++++|.+.....
T Consensus 115 L~l~~n~i~-------------------~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 115 LYLNEDNIS-------------------DISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp EECTTSCCC-------------------CCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred EECcCCccc-------------------Cchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh
Confidence 555555544 3333 33455555555555533332222 3456666666666666666655
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+..+++|++|++++|.+.+... +... ++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQ 244 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCC
Confidence 6777788888888877776544 4444 788888888888877654 3568889999999888887655 778899
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
|++|++++|.+++. . .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+.
T Consensus 245 L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--N------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CCEEECCSSCCCCC--G------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CCEEECCCCccCCC--h------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 99999999988764 2 578889999999999988864 4578889999999999999998888899
Q ss_pred CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccC
Q 007082 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 496 (619)
.+++|++|++++|++++..+ +..+++|+.+++++|++.
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999999988766 677899999999999873
No 32
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=8.2e-34 Score=308.88 Aligned_cols=462 Identities=19% Similarity=0.222 Sum_probs=319.9
Q ss_pred HHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCCh------------
Q 007082 13 CIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDA------------ 80 (619)
Q Consensus 13 c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~------------ 80 (619)
.+..||++|+.+..+.+....+.......+...++ .+++++.|+++++..+..
T Consensus 29 ~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 93 (594)
T 2p1m_B 29 SVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR---------------RFPKVRSVELKGKPHFADFNLVPDGWGGYV 93 (594)
T ss_dssp HHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHH---------------HCTTCCEEEEECSCGGGGGTCSCTTSCCBC
T ss_pred HHHHHHHHHHHhhhhhceEEeeccccccCHHHHHh---------------hCCCceEEeccCCCchhhcccccccccchh
Confidence 34567888877755554444443333222221111 135788888888652211
Q ss_pred --HHHHHHhcCCCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCCCCChhH
Q 007082 81 --EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADG 156 (619)
Q Consensus 81 --~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~ 156 (619)
.+...+..+++|++|+|++|. +++..+..+. .+++|++|+|++|..+++..+..+. ++++|++|++++|.+++..
T Consensus 94 ~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 94 YPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred hHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 123345578888888888887 7777777776 6888888888888655555454444 7888888888888765543
Q ss_pred HHHhh----cCCCCCEEEcCCCC--CChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC
Q 007082 157 IALLS----SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229 (619)
Q Consensus 157 ~~~~~----~l~~L~~L~L~~n~--~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 229 (619)
...+. .+++|++|++++|. +....... +.++++|++|++++|.-.+..+..+..+++|+.|++..+..
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----- 247 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA----- 247 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC-----
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC-----
Confidence 33332 56788888888875 44333333 35678888888888732223666777777888877665432
Q ss_pred CCCCcEEEcCCccccccccccCCCCCccEE-eccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCE
Q 007082 230 ISSLECLNLSNCTIDSILEGNENKAPLAKI-SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEH 305 (619)
Q Consensus 230 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~ 305 (619)
++..+.+..++..+..+++|+.+ .+.+.....++.. ...+++|++|++++|.++.. ..+..+++|++
T Consensus 248 -------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 248 -------EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp -------CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG--HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred -------ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH--HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 23445556666666677888877 4444333233322 23578888888888887654 34568899999
Q ss_pred EeCcCCCCChhHHHHHHhcCCCCcEEEc---------cCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh-CCC
Q 007082 306 LDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMP 375 (619)
Q Consensus 306 L~l~~n~l~~~~~~~~~~~~~~L~~L~L---------~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~ 375 (619)
|++++| +++.....+...+++|++|++ ..+.+++.....+...+++|++|.+..|.+++.....+. .++
T Consensus 319 L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 319 LWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397 (594)
T ss_dssp EEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred EeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence 999988 666666666655589999998 335777777777766799999999988999988777665 689
Q ss_pred CCcEEEcc--C----CccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC-CCCCCEEecCCCCCC
Q 007082 376 SLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLRNASLT 448 (619)
Q Consensus 376 ~L~~L~L~--~----n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~ 448 (619)
+|++|+++ + +.+++..... .+. ..+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.++
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDI-----GFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHH-----HHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred CcceeEeecccCCCcccccCCchhh-----HHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 99999999 3 4454221110 000 0367889999999987 676655556655 899999999999998
Q ss_pred chhHHhh-cCCCCCCEEEcCCCccCchhhcc-CCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082 449 DVSLHQL-SSLSKLTNLSIRDAVLTNSGLGS-FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 514 (619)
Q Consensus 449 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 514 (619)
+..+..+ ..+++|++|+|++|.+++..+.. ...+++|+.|++++|+. ...++..+...+|.+.+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEE
Confidence 8766665 67999999999999997765543 34479999999999998 777788888888888664
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-34 Score=291.34 Aligned_cols=312 Identities=18% Similarity=0.248 Sum_probs=228.9
Q ss_pred CCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (619)
Q Consensus 139 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 218 (619)
+++++.|+++++.++..+...|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46777777777777666666677777777777777777766666777777777777777777776666677766666666
Q ss_pred cCCCCCCCCC-----CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082 219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (619)
Q Consensus 219 l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (619)
+++|.++.++ .+++|++|++++|.+..+++. +..+++|++|++++|.+...
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 180 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------------- 180 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------------
Confidence 6666665433 345566666666666555433 33555555555555554433
Q ss_pred hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082 293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (619)
Q Consensus 293 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 372 (619)
.+..+++|++|++++|.+++.. ..+.|++|++++|.+..... ..+++|+.|++++|.+++. ..+.
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ---ccccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHc
Confidence 2344566677777766665432 11678888888887776532 2357899999999998875 4678
Q ss_pred CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (619)
.+++|++|++++|.+++..+. .|..+++|++|++++|++++ ++..+..+++|++|+|++|+++++ |
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~ 311 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E 311 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G
T ss_pred CCCCccEEECCCCcCCCcChh------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-C
Confidence 899999999999999988777 78999999999999999985 466677889999999999999975 4
Q ss_pred HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHH
Q 007082 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 505 (619)
Q Consensus 453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 505 (619)
..+..+++|++|++++|++++.. +..+++|+.|++++|+|.|+|...++.
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred ccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHHH
Confidence 56778899999999999998763 566799999999999999987655444
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-34 Score=313.56 Aligned_cols=390 Identities=19% Similarity=0.200 Sum_probs=291.9
Q ss_pred CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEE
Q 007082 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170 (619)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 170 (619)
++++|+|++|+ ++.....+|.++++|++|+|++| .++...+.+|.++++|++|+|++|.++..++..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 79999999988 88777778999999999999999 78877778899999999999999999998888999999999999
Q ss_pred cCCCCCChhHHHHhhcCCCCCEEEccCCccCch-hhHhhcCCCCCCEEecCCCCCCCCC--------CC-CCCcEEEcCC
Q 007082 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NI-SSLECLNLSN 240 (619)
Q Consensus 171 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~l~--------~l-~~L~~L~l~~ 240 (619)
+++|.+.+..+..|+++++|++|++++|.+... .|..+..+++|++|++++|.++.+. .+ .....++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999988777899999999999999999764 5778899999999999999998654 12 2345677888
Q ss_pred ccccccccccCCCCCccEEeccCccccchhHH------------------------------------------------
Q 007082 241 CTIDSILEGNENKAPLAKISLAGTTFINEREA------------------------------------------------ 272 (619)
Q Consensus 241 ~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------------ 272 (619)
|.+..++...+....++.+++.+|........
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 87776665555444444444444322110000
Q ss_pred -------------------------------HhhhccCCCcEEeccCCCcchh---------------------hhhhcC
Q 007082 273 -------------------------------FLYIETSLLSFLDVSNSSLSRF---------------------CFLTQM 300 (619)
Q Consensus 273 -------------------------------~~~~~~~~L~~L~l~~n~l~~~---------------------~~~~~~ 300 (619)
..+.....++.|++.+|.+... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0011223444555554443222 112234
Q ss_pred CCCCEEeCcCCCCChh--HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH-HHHhhCCCCC
Q 007082 301 KALEHLDLSSSMIGDD--SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSL 377 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L 377 (619)
++|+.+++++|.+... .+...... .+|+.+++..+....... .+ ..+++|+.+++.++...... ...+..++++
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~~~~-~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVITMSS-NF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEEECS-CC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccchhhccccccccccccchhhh-hhhhhhhccccccccccc-cc-cccccccchhhhhcccccccccccccccccc
Confidence 5566666666554321 12222233 566666666655443322 11 34677777777776544332 2346678888
Q ss_pred cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCC-CCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV-SDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
+.++++.|.+.+..+. .+..+++|++|++++|.+ .+..|..|..+++|++|+|++|++++++|..|.
T Consensus 448 ~~l~ls~n~l~~~~~~------------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNG------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp CEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccccccccc------------ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 8899999888877777 788999999999999964 445778899999999999999999999999999
Q ss_pred CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 99999999999999999988899999999999999999854
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-33 Score=294.33 Aligned_cols=324 Identities=20% Similarity=0.166 Sum_probs=211.8
Q ss_pred CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh-hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 218 (619)
++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 344444444444444433444444444444444444432 2223344444444444444444444444444444444444
Q ss_pred cCCCCCCC-------CCCCCCCcEEEcCCccccccc-cc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCC
Q 007082 219 LAWTGVTK-------LPNISSLECLNLSNCTIDSIL-EG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289 (619)
Q Consensus 219 l~~n~l~~-------l~~l~~L~~L~l~~~~l~~l~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 289 (619)
+++|.+++ +..+++|++|++++|.+..+. .. +..+++|++|++++|.+.+..+.. +..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l----------- 177 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNF----------- 177 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGG-----------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcc-----------
Confidence 44444432 334455555555555555442 22 335566666666666555433221 0011
Q ss_pred CcchhhhhhcCCCCCEEeCcCCCCChhHHH--------HHHhcCCCCcEEEccCCCCCCchHHHHHhc--CCCCcEEEcc
Q 007082 290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVE--------MVACVGANLRNLNLSNTRFSSAGVGILAGH--LPNLEILSLS 359 (619)
Q Consensus 290 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~L~~L~l~ 359 (619)
...+|+.|++++|.+.+.... .+... ++|++|++++|++++..+..+... .++|+.|+++
T Consensus 178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ---------ccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 013455555555554432211 11222 789999999999999877766442 3899999999
Q ss_pred CCCCChHH----------HHHhh--CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082 360 GTQIDDYA----------ISYMS--MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (619)
Q Consensus 360 ~n~l~~~~----------~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (619)
+|...+.. ...+. ..++|++|++++|.+.+..+. .+..+++|++|++++|.+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS------------VFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT------------TTTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchh------------hcccCCCCCEEECCCCcccccC
Confidence 98644321 11122 247999999999999998888 7999999999999999999888
Q ss_pred cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 8999999999999999999999989999999999999999999999989999999999999999999864
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.9e-33 Score=280.23 Aligned_cols=307 Identities=23% Similarity=0.296 Sum_probs=232.8
Q ss_pred hhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCC
Q 007082 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL 190 (619)
Q Consensus 111 l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 190 (619)
+..+++|++|++++| .+.. ...+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCC-cccc--chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 346789999999999 4544 2457889999999999999988655 89999999999999998875 468999999
Q ss_pred CEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchh
Q 007082 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270 (619)
Q Consensus 191 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 270 (619)
++|++++|.+.+..+ +..+++|+.|++++|... ..++.+..+++|++|++++|.+...+
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNL-------------------SDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-------------------CCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCc-------------------ccccchhhCCCCcEEEecCCCcCCch
Confidence 999999999987544 777777777777766322 11122334445555555555544443
Q ss_pred HHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082 271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350 (619)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 350 (619)
. +..+++|+.|++++|.+.....+..+++|+.+++++|.+++..+ +... ++|++|++++|++++..+ +..+
T Consensus 172 ~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~l 242 (347)
T 4fmz_A 172 P---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LANL 242 (347)
T ss_dssp G---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTTC
T ss_pred h---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhcC
Confidence 3 33566666666666666666556777888888888887776544 4444 788888888888877654 3668
Q ss_pred CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 430 (619)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 430 (619)
++|++|++++|.+++. ..+..+++|++|++++|++++. . .+..+++|++|++++|.+++..+..
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S------------VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h------------hhcCCCCCCEEECcCCcCCCcChhH
Confidence 8888999988888875 3577888999999999988765 2 5778889999999999988888888
Q ss_pred ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
+..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8889999999999999988766 788899999999999875
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-34 Score=301.16 Aligned_cols=394 Identities=19% Similarity=0.180 Sum_probs=139.8
Q ss_pred hHHHHHHhccccccCchHHHHHHHHHHHHhhcc-------ChhhHHH------------hcCCccEEeccCCCCCChHHH
Q 007082 23 SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEV------------FKHNAEAIELRGENSVDAEWM 83 (619)
Q Consensus 23 ~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------~p~~~~~------------~~~~l~~L~Ls~~~~~~~~~~ 83 (619)
.++...++...++.+|+.+.. ++.|...+.. .|..+.. ...++++|++++|. +.+ ++
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~--L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~-lp 87 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAEN--VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS-LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC-CC
T ss_pred cchhhhcccCchhhCChhHhc--ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc-CC
Confidence 356677777778888877765 3322222111 1211110 01234555555554 221 11
Q ss_pred HHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCC-CCCcEEEccCCCCChhHHHHhhc
Q 007082 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI-STLEKLWLSETGLTADGIALLSS 162 (619)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~ 162 (619)
. -.++|++|++++|. ++.. + ...++|++|++++| .++. +... ++|++|++++|.+++.+ .|+.
T Consensus 88 ~---~~~~L~~L~l~~n~-l~~l-p---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~lp--~~~~ 151 (454)
T 1jl5_A 88 E---LPPHLESLVASCNS-LTEL-P---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKLP--ELQN 151 (454)
T ss_dssp S---CCTTCSEEECCSSC-CSSC-C---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSCC--CCTT
T ss_pred C---CcCCCCEEEccCCc-CCcc-c---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCCc--ccCC
Confidence 1 12455555555554 3321 1 12245555555555 3322 1111 45555555555555432 3555
Q ss_pred CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCc
Q 007082 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNC 241 (619)
Q Consensus 163 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~ 241 (619)
+++|++|++++|.+.+. |. ..++|++|++++|.+++. | .+..+++|+.|++++|.+++++. .++|++|++++|
T Consensus 152 l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 55555555555555442 11 123555555555555542 2 35555555555555555555442 234555555555
Q ss_pred cccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHH
Q 007082 242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321 (619)
Q Consensus 242 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 321 (619)
.+..+|. +..+++|++|++++|.+.+++. ..++|+.|++++|.+++++. .+++|++|++++|.+++..
T Consensus 226 ~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~l~~l~---- 293 (454)
T 1jl5_A 226 ILEELPE-LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLS---- 293 (454)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEES----
T ss_pred cCCcccc-cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc--ccCcCCEEECcCCccCccc----
Confidence 5555542 4455555555555555554332 12445555555554444321 1244455555544444311
Q ss_pred HhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhh
Q 007082 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 401 (619)
Q Consensus 322 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~ 401 (619)
...++|+.|++++|++++.. ...++|++|++++|++++.+ . .+++|++|++++|++++. |.
T Consensus 294 -~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N~l~~l-p~-------- 354 (454)
T 1jl5_A 294 -ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFNHLAEV-PE-------- 354 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCC-CC--------
T ss_pred -CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCCccccc-cc--------
Confidence 01134444444444444321 11124444444444444321 1 134444444444444321 11
Q ss_pred hhHHhhccCCcCCEEEccCCCCCC--CCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch--hhc
Q 007082 402 LSLTALQNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS--GLG 477 (619)
Q Consensus 402 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 477 (619)
.+++|++|++++|++++ .+|..+. .| +.|.+.+.+|. .+++|+.|++++|++++. +|
T Consensus 355 -------~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP- 415 (454)
T 1jl5_A 355 -------LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIP- 415 (454)
T ss_dssp -------CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------------------------------
T ss_pred -------hhhhccEEECCCCCCCcCCCChHHHH------hh--hhccccccccc---ccCcCCEEECCCCcCCccccch-
Confidence 13344444444444443 2222221 11 12223332222 138899999999999873 33
Q ss_pred cCCCCCCCcEEEcCCCccCC
Q 007082 478 SFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 478 ~~~~~~~L~~l~l~~n~~~~ 497 (619)
++++.+++.+|.+.|
T Consensus 416 -----~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 -----ESVEDLRMNSERVVD 430 (454)
T ss_dssp --------------------
T ss_pred -----hhHhheeCcCcccCC
Confidence 457778888888755
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.1e-34 Score=295.90 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=173.0
Q ss_pred cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (619)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 167 (619)
++++|++|++++|. ++.. ..+..+++|++|++++| .++.. .++.+++|++|++++|.+++.. ++.+++|+
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred HcCCCCEEEccCCC-cccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence 34444444444443 3322 13444444444444444 23322 1344444555555554444431 44444555
Q ss_pred EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC-CCCC--CCCCCCCcEEEcCCcccc
Q 007082 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK--LPNISSLECLNLSNCTID 244 (619)
Q Consensus 168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~--l~~l~~L~~L~l~~~~l~ 244 (619)
+|++++|.+.+. + ++.+++|++|++++|.+++. .+..+++|+.|++++| .+.. +..+++|++|++++|.++
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence 555555544443 1 44445555555555544442 1444445555555544 2221 224455555555555555
Q ss_pred ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhc
Q 007082 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (619)
Q Consensus 245 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 324 (619)
.++ +..+++|+.|++++|.+.+.+ +..+++|+.|++++|.+++++ +..+++|++|++++|.+++..+. .+
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~---~l 253 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVS---TL 253 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCT---TC
T ss_pred eec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHH---HC
Confidence 543 445555555555555555441 334555555555555555544 45555666666666655554321 11
Q ss_pred CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (619)
Q Consensus 325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~ 404 (619)
++|+.|++++| +|+.|++++|.+.+..| ++.+++|+.|++++|...+.+|... ..+..+
T Consensus 254 -~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~L 312 (457)
T 3bz5_A 254 -SKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGITEL 312 (457)
T ss_dssp -TTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCCSCC
T ss_pred -CCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---CcceEe
Confidence 55555555433 33444455554443332 3445566666666665554444310 001111
Q ss_pred HhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082 405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (619)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (619)
.+.++++|++|++++|++++. .+..+++|+.|++++|+++++ +.|..|++++|.++|. ..+..
T Consensus 313 -~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~ 375 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTIT 375 (457)
T ss_dssp -CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEE
T ss_pred -chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeee
Confidence 244556777788888777763 267777788888887777762 3455556666666654 12344
Q ss_pred CcEEEcCCCccC
Q 007082 485 LKLLDLHGGWLL 496 (619)
Q Consensus 485 L~~l~l~~n~~~ 496 (619)
+..+++++|.+.
T Consensus 376 l~~l~l~~N~l~ 387 (457)
T 3bz5_A 376 MPKETLTNNSLT 387 (457)
T ss_dssp CCCBCCBTTBEE
T ss_pred cCccccccCcEE
Confidence 556667776653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-34 Score=291.54 Aligned_cols=331 Identities=18% Similarity=0.168 Sum_probs=229.7
Q ss_pred cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (619)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 167 (619)
.++++++|+++++. ++......+..+++|++|++++| .++...+..+..+++|++|++++|.+++..+..|+.+++|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 35677788887765 55555555677778888888877 56665556677777888888888777776666777777888
Q ss_pred EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC--CCCCCcEEEcCCccccc
Q 007082 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDS 245 (619)
Q Consensus 168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~ 245 (619)
+|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.++.++ .+++|+.|++++|.+..
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 8888887777665555677778888888887777766666777777777777776665432 34444444444444332
Q ss_pred cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325 (619)
Q Consensus 246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 325 (619)
++ ..++|++|++++|.+...... ..
T Consensus 201 ~~---------------------------------------------------~~~~L~~L~l~~n~l~~~~~~----~~ 225 (390)
T 3o6n_A 201 LA---------------------------------------------------IPIAVEELDASHNSINVVRGP----VN 225 (390)
T ss_dssp EE---------------------------------------------------CCSSCSEEECCSSCCCEEECC----CC
T ss_pred cC---------------------------------------------------CCCcceEEECCCCeeeecccc----cc
Confidence 21 112344444444444332111 11
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
++|+.|++++|.+++.. .++.+++|++|++++|.+++..+..+..+++|++|++++|++++.. .
T Consensus 226 ~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~------------ 289 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L------------ 289 (390)
T ss_dssp SSCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-C------------
T ss_pred ccccEEECCCCCCcccH---HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-c------------
Confidence 56777777777776642 2366889999999999998887888888999999999999987753 3
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (619)
.+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++... +..+++|+.|++++|++.......+ +..+
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~--~~~~ 363 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL--FRNV 363 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH--TTTC
T ss_pred ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHH--HHHH
Confidence 4577899999999999988 55667888899999999999998863 6778999999999999987543332 1233
Q ss_pred cEEEcCCCccCC
Q 007082 486 KLLDLHGGWLLT 497 (619)
Q Consensus 486 ~~l~l~~n~~~~ 497 (619)
....+.+++..|
T Consensus 364 ~~~~~~~~~~~c 375 (390)
T 3o6n_A 364 ARPAVDDADQHC 375 (390)
T ss_dssp CTTTBCCCCSCC
T ss_pred HhhcccccCcee
Confidence 333355666555
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-33 Score=294.85 Aligned_cols=345 Identities=15% Similarity=0.157 Sum_probs=279.9
Q ss_pred cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (619)
.+++++|++++|. +.+. + .++.+++|++|++++|. ++.. .++.+++|++|++++| .++.. .++++++|+
T Consensus 41 l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCC
T ss_pred cCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCC
Confidence 4689999999998 5443 3 68999999999999998 6654 2789999999999999 56654 278999999
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC
Q 007082 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (619)
Q Consensus 144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 223 (619)
+|++++|.+++.. ++.+++|++|++++|.+.+. .++.+++|++|++++|...+.. .+..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9999999998853 88999999999999999885 3889999999999999544443 47889999999999999
Q ss_pred CCCCC--CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCC
Q 007082 224 VTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (619)
Q Consensus 224 l~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 301 (619)
++.++ .+++|+.|++++|.++.++ +..+++|+.|++++|.+.+++ +..+++|+.|++++|.+++.+ ...++
T Consensus 182 l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~-~~~l~ 254 (457)
T 3bz5_A 182 ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD-VSTLS 254 (457)
T ss_dssp CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC-HHHCC
Confidence 98765 7889999999999999873 678999999999999999965 558899999999999998874 56678
Q ss_pred CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH--------HhhC
Q 007082 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS--------YMSM 373 (619)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~ 373 (619)
+|+.|++++| +|+.|++++|.+.+..+ .+.+++|+.|++++|...+..+. .+++
T Consensus 255 ~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 255 KLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp TCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 8888877654 45566666666555433 14567777777777654332221 1445
Q ss_pred CCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHH
Q 007082 374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 453 (619)
Q Consensus 374 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 453 (619)
+++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.+++.
T Consensus 317 ~~~L~~L~L~~N~l~~l---------------~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--- 370 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL---------------DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--- 370 (457)
T ss_dssp CTTCCEEECTTCCCSCC---------------CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---
T ss_pred cccCCEEECCCCccccc---------------ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---
Confidence 68999999999999884 36789999999999999985 35678889999999885
Q ss_pred hhcCCCCCCEEEcCCCccCchhhccCC
Q 007082 454 QLSSLSKLTNLSIRDAVLTNSGLGSFK 480 (619)
Q Consensus 454 ~~~~l~~L~~L~L~~n~l~~~~~~~~~ 480 (619)
..+..|+.+++++|+++|.+|..+.
T Consensus 371 --~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 371 --GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp --EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred --ceeeecCccccccCcEEEEcChhHh
Confidence 3456788899999999998876553
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-33 Score=300.00 Aligned_cols=313 Identities=18% Similarity=0.252 Sum_probs=228.5
Q ss_pred CCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (619)
Q Consensus 139 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 218 (619)
+++++.++++++.+...++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777777666666667777777777777777776666777777777777777777776666666666666666
Q ss_pred cCCCCCCCCC-----CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082 219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (619)
Q Consensus 219 l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (619)
+++|.++.++ .+++|++|++++|.+..+++. +..+++|+.|++++|.+.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 6666655433 345555555655555554432 334555555555555444332
Q ss_pred hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082 293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (619)
Q Consensus 293 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 372 (619)
+..+++|+.|++++|.+++.. ..++|+.|++++|.+..... ...++|+.|++++|.+++. ..+.
T Consensus 188 ----~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp ----GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGG
T ss_pred ----hhhhhhhhhhhcccCcccccc------CCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hhhc
Confidence 344566777777777666532 11678888888887776533 2256899999999998874 5678
Q ss_pred CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (619)
.+++|++|++++|.+.+..|. .|..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++++ |
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~ 317 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E 317 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G
T ss_pred cCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-C
Confidence 899999999999999998887 79999999999999999985 566777899999999999999974 5
Q ss_pred HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 506 (619)
Q Consensus 453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 506 (619)
..+..+++|+.|+|++|.+++.. +..+++|+.|++++|+|.|+|...++..
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRN 368 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence 56788999999999999998763 5667999999999999999986555443
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.5e-32 Score=285.53 Aligned_cols=370 Identities=23% Similarity=0.243 Sum_probs=256.3
Q ss_pred CCccEEEcCCCCCCChHHHHH-hhCCCCCCEEeCCCCCCCChhh----HhhhcCCCCCcEEEccCCCCChhHHHHhh-cC
Q 007082 90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAG----MKHLLSISTLEKLWLSETGLTADGIALLS-SL 163 (619)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l 163 (619)
++|++|+|++|+ +++..... +..+++|++|++++| .+++.. +..+..+++|++|++++|.+.+..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 467888888776 66665554 667788888888888 566543 34455677888888888877765554333 34
Q ss_pred C----CCCEEEcCCCCCCh----hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcE
Q 007082 164 Q----NLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLEC 235 (619)
Q Consensus 164 ~----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~ 235 (619)
+ +|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+...- ....++|++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------~~~~~~L~~ 146 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------LDPQCRLEK 146 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH--------------TSTTCCCCE
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH--------------hcCCCcceE
Confidence 4 57788887777774 4466677777777777777777654444332200 001234455
Q ss_pred EEcCCccccc-----cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhh-----hcCCCC
Q 007082 236 LNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFL-----TQMKAL 303 (619)
Q Consensus 236 L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~-----~~~~~L 303 (619)
|++++|.++. ++.. +..+++|++|++++|.+... ..+ ...++|
T Consensus 147 L~L~~n~l~~~~~~~l~~~-------------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 147 LQLEYCSLSAASCEPLASV-------------------------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp EECTTSCCBGGGHHHHHHH-------------------------HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred EECCCCCCCHHHHHHHHHH-------------------------HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence 5555554442 2222 23445566666666655443 112 236799
Q ss_pred CEEeCcCCCCChhH----HHHHHhcCCCCcEEEccCCCCCCchHHHH----HhcCCCCcEEEccCCCCChH----HHHHh
Q 007082 304 EHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVGIL----AGHLPNLEILSLSGTQIDDY----AISYM 371 (619)
Q Consensus 304 ~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~~ 371 (619)
++|++++|.+++.. +..+... ++|++|++++|.+++.....+ ...+++|++|++++|.+++. .+..+
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 99999999998864 4445555 999999999999988654433 23589999999999999986 45667
Q ss_pred hCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC----CcccccCCCCCCEEecCCCCC
Q 007082 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASL 447 (619)
Q Consensus 372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 447 (619)
..+++|++|++++|.+++..+.. +. -......++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~------l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARL------LC-ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHH------HH-HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred hhCCCcceEECCCCCCchHHHHH------HH-HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 77999999999999987554330 00 00112347999999999999875 355566789999999999999
Q ss_pred CchhHHhhcC-----CCCCCEEEcCCCccCc----hhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082 448 TDVSLHQLSS-----LSKLTNLSIRDAVLTN----SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (619)
Q Consensus 448 ~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 509 (619)
++..+..+.. .++|++|++++|.+++ ..+..+..+++|+.|++++|++ .+.+...+.+..+
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i-~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVR 423 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC-CHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC-CHHHHHHHHHHhc
Confidence 8876665543 6899999999999997 5677777789999999999998 5556666665443
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7.4e-33 Score=301.15 Aligned_cols=428 Identities=17% Similarity=0.177 Sum_probs=325.8
Q ss_pred cEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC-------------hHHHHHhh-CCCCCCEEeCCCCCCCChhhH
Q 007082 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT-------------SSALWALT-GMTCLKELDLSRCVKVTDAGM 133 (619)
Q Consensus 68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-------------~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~ 133 (619)
..+.+..+. .......+.++++|++|+|++|..+. ...+..+. .+++|++|+|++| .+++..+
T Consensus 53 ~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~ 129 (592)
T 3ogk_B 53 EHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL 129 (592)
T ss_dssp CEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred cEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence 445554432 22345677899999999998765322 12233333 8999999999999 7888888
Q ss_pred hhhcC-CCC-CcEEEccCCC-CChhHH-HHhhcCCCCCEEEcCCCCCChh----HHHHhhcCCCCCEEEccCCccC----
Q 007082 134 KHLLS-IST-LEKLWLSETG-LTADGI-ALLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVS---- 201 (619)
Q Consensus 134 ~~l~~-l~~-L~~L~L~~~~-~~~~~~-~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~---- 201 (619)
..+.. +++ |++|++++|. ++.... .....+++|++|+|++|.+.+. .+..+..+++|++|++++|.++
T Consensus 130 ~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 77775 445 9999999985 443333 3445899999999999987554 4455678999999999999987
Q ss_pred chhhHhhcCCCCCCEEecCCCCCCCCC----CCCCCcEEEcCCcccc----ccccccCCCCCccEEeccCccccchhHHH
Q 007082 202 NRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTID----SILEGNENKAPLAKISLAGTTFINEREAF 273 (619)
Q Consensus 202 ~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~~~l~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 273 (619)
+..+..+..+++|+.|++++|.+..++ .+++|++|+++.+... ..+..+..+++|+.|++.++.....+..
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~- 288 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL- 288 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-
T ss_pred HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-
Confidence 345566778999999999999887655 6899999999854322 3444556889999999998765555543
Q ss_pred hhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccC-----------CCCC
Q 007082 274 LYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFS 339 (619)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~ 339 (619)
+..+++|++|++++|.++.. ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.++
T Consensus 289 -~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 289 -FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp -GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred -HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 44789999999999997665 346889999999999 5666666666665569999999993 6788
Q ss_pred CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhC-CCCCcEEEcc----CCccCcc-----hhccccchhhhhhHHhhcc
Q 007082 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGF-----IQQVGAETDLVLSLTALQN 409 (619)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~----~n~~~~~-----~~~~~~~~~~~~~~~~~~~ 409 (619)
+.....+...+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++. .+.+
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------~~~~ 434 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------LLIG 434 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------HHHH
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH------------HHHh
Confidence 7777776677999999999999999988877775 9999999997 5667653 222 4678
Q ss_pred CCcCCEEEccCCC--CCCCCccccc-CCCCCCEEecCCCCCCch-hHHhhcCCCCCCEEEcCCCccCchhhc-cCCCCCC
Q 007082 410 LNHLERLNLEQTQ--VSDATLFPLS-TFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRS 484 (619)
Q Consensus 410 l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 484 (619)
+++|++|++++|. +++..+..+. .+++|+.|+|++|.+++. .+..+..+++|++|+|++|.+++.... .+..+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 9999999998653 6655555554 489999999999999885 455668899999999999998765433 3456799
Q ss_pred CcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082 485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVW 514 (619)
Q Consensus 485 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 514 (619)
|+.|++++|++ .+.++..+....|.+.+.
T Consensus 515 L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 515 LRYLWVQGYRA-SMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred cCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence 99999999995 444555555666665544
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.7e-33 Score=299.44 Aligned_cols=311 Identities=18% Similarity=0.184 Sum_probs=218.9
Q ss_pred cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (619)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 167 (619)
.+++++.|++++|. +.......+.++++|++|+|++| .++...+..|+.+++|++|++++|.+++.++..|+.+++|+
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35677778887765 55555555677778888888877 56666666777778888888888877777666777788888
Q ss_pred EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC--CCCCCcEEEcCCccccc
Q 007082 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDS 245 (619)
Q Consensus 168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~ 245 (619)
+|+|++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.++.++ .+++|+.|++++|.+..
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 8888888777666555677788888888888777777777777777777777777666443 34444444444444332
Q ss_pred cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325 (619)
Q Consensus 246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 325 (619)
++ ..++|+.|++++|.++..... ..
T Consensus 207 l~---------------------------------------------------~~~~L~~L~ls~n~l~~~~~~----~~ 231 (597)
T 3oja_B 207 LA---------------------------------------------------IPIAVEELDASHNSINVVRGP----VN 231 (597)
T ss_dssp EE---------------------------------------------------CCTTCSEEECCSSCCCEEECS----CC
T ss_pred cc---------------------------------------------------CCchhheeeccCCcccccccc----cC
Confidence 21 112334444444433322111 01
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
++|+.|++++|.+++. . .++.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++. |.
T Consensus 232 ~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~------------ 295 (597)
T 3oja_B 232 VELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NL------------ 295 (597)
T ss_dssp SCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-EC------------
T ss_pred CCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cc------------
Confidence 4566666666666664 2 235688888888888888888788888888999999999888775 33
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 475 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 475 (619)
.+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|++++..
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 4567889999999999888 56777788889999999999988763 667888999999999988753
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=289.94 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=170.5
Q ss_pred CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (619)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 220 (619)
++++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 44555555555544444445555555555555555554444455555555555555555554444445555555555555
Q ss_pred CCCCCC-----CCCCCCCcEEEcCCcccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh
Q 007082 221 WTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 294 (619)
Q Consensus 221 ~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 294 (619)
+|.+.. +..+++|++|++++|.+..+++ .+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+...
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEe
Confidence 555442 2345566666666666665543 344677777777777777665543 233455555555555555444
Q ss_pred --hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082 295 --CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (619)
Q Consensus 295 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 372 (619)
..+..+++|++|++++| ...+..+...+ ...+|++|++++|.+++.++..+.
T Consensus 192 ~~~~~~~l~~L~~L~l~~~-------------------------~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHW-------------------------PYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp CTTCSCSCTTCCEEEEECC-------------------------TTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ChhhcccCcccceeeCCCC-------------------------ccccccCcccc-cCccccEEECcCCcccccCHHHhc
Confidence 23444455555555544 33332222221 234666666666666666555666
Q ss_pred CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (619)
.+++|++|++++|++++..+. .|..+++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGS------------MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTT------------SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred CccccCeeECCCCcCCccChh------------hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 667777777777776665555 56667777777777777776666677777777777777777777666
Q ss_pred HhhcCCCCCCEEEcCCCccCc
Q 007082 453 HQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 453 ~~~~~l~~L~~L~L~~n~l~~ 473 (619)
..|..+++|+.|+|++|++..
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEEC
T ss_pred hHcCCCcccCEEEccCCCccC
Confidence 666777777777777777654
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1.8e-29 Score=274.57 Aligned_cols=400 Identities=19% Similarity=0.176 Sum_probs=222.6
Q ss_pred cCCccEEeccCCCCCChHHHHHHh-cCCCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc----
Q 007082 64 KHNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL---- 137 (619)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~---- 137 (619)
+++|++|+|++|. +++..+..+. .+++|++|+|++|..++...+..+. ++++|++|++++|. +++.....+.
T Consensus 104 ~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 6789999999998 7777666665 7999999999999667776666655 89999999999994 5544433333
Q ss_pred CCCCCcEEEccCCC--CChhHHH-HhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-------cCchhhHh
Q 007082 138 SISTLEKLWLSETG--LTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-------VSNRGAAV 207 (619)
Q Consensus 138 ~l~~L~~L~L~~~~--~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------i~~~~~~~ 207 (619)
.+++|++|++++|. +...... .+..+++|++|++++|...+..+..+..+++|++|++..+. +.+ .+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 67899999999986 5544333 34678999999999995444477888899999999976553 333 3446
Q ss_pred hcCCCCCCEE-ecCCCCCCCCC----CCCCCcEEEcCCccccc--cccccCCCCCccEEeccCccccchhHHHhhhccCC
Q 007082 208 LKMFPRLSFL-NLAWTGVTKLP----NISSLECLNLSNCTIDS--ILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 280 (619)
Q Consensus 208 ~~~~~~L~~L-~l~~n~l~~l~----~l~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 280 (619)
+.++++|+.| .+.......++ .+++|++|++++|.+.. +...+..+++|++|++.+| +...........+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 7888888887 34333222222 34566666666665442 2222335555555555555 221111111123444
Q ss_pred CcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc-
Q 007082 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS- 359 (619)
Q Consensus 281 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~- 359 (619)
|+.|++.++...+ ...++.+++.....+...+++|+.|.+..+.+++..+..+...+++|+.|+++
T Consensus 340 L~~L~L~~~~~~g-------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 340 LRELRVFPSEPFV-------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp CCEEEEECSCTTC-------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CCEEEEecCcccc-------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 5555442210000 00223444444444443235555555555555554444443345555555555
Q ss_pred -C----CCCC----h-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhcc-CCcCCEEEccCCCCCCCCc
Q 007082 360 -G----TQID----D-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQN-LNHLERLNLEQTQVSDATL 428 (619)
Q Consensus 360 -~----n~l~----~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~ 428 (619)
+ +.++ + ..+..+..+++|++|++++ .+++.... .+.. +++|++|++++|.+++..+
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~------------~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE------------YIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH------------HHHHHCTTCCEEEEESCCSSHHHH
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH------------HHHHhchhccEeeccCCCCcHHHH
Confidence 2 3333 1 1122234455555555544 33332222 2222 4555555555555544333
Q ss_pred ccc-cCCCCCCEEecCCCCCCchhHH-hhcCCCCCCEEEcCCCccCchhhccC-CCCCCCcEEEcCCC
Q 007082 429 FPL-STFKELIHLSLRNASLTDVSLH-QLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGG 493 (619)
Q Consensus 429 ~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~l~l~~n 493 (619)
..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.++...+..+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 333 3455555555555555443332 22335555555555555544333333 22445544444433
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.5e-29 Score=250.89 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=177.1
Q ss_pred CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (619)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 220 (619)
+++.++++++.++..+. . -.++|+.|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~-~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-D--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCC-S--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCc-c--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56666666665554321 1 12467777777777776665667777777777777777776666666666666666666
Q ss_pred CCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hh
Q 007082 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CF 296 (619)
Q Consensus 221 ~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~ 296 (619)
+|.++.++ ..++ ++|++|++++|.+...+.. .+..+++|+.|++++|.+... ..
T Consensus 109 ~n~l~~l~-------------------~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 109 KNQLKELP-------------------EKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp SSCCSBCC-------------------SSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred CCcCCccC-------------------hhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhh
Confidence 66555443 2221 3444444444444433322 122333344444443333221 23
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+..+++ |++|++++|.++.... ...++|++|++++|.+++..+..+..+++
T Consensus 167 ~~~l~~-------------------------L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 167 FQGMKK-------------------------LSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp GGGCTT-------------------------CCEEECCSSCCCSCCS----SCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred ccCCCC-------------------------cCEEECCCCccccCCc----cccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 344444 4445555444444321 11367777777777777776667777888
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
|++|++++|.+++..+. .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++++.+..|.
T Consensus 218 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 88888888888776665 6777888888888888877 5667777788888888888888877666664
Q ss_pred C------CCCCCEEEcCCCccCc--hhhccCCCCCCCcEEEcCCCc
Q 007082 457 S------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW 494 (619)
Q Consensus 457 ~------l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~l~l~~n~ 494 (619)
. .+.|+.|++++|++.. ..|..|..+.+++.+++++|.
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3678888888888764 455677777888888888873
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.3e-29 Score=252.39 Aligned_cols=287 Identities=17% Similarity=0.181 Sum_probs=177.2
Q ss_pred CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (619)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 220 (619)
+++.++++++.++..+. .+ .++|+.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 45666666665554321 11 2567777777777776666667777777777777777777667777777777777766
Q ss_pred CCCCCCCCC--CCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhh
Q 007082 221 WTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297 (619)
Q Consensus 221 ~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 297 (619)
+|.++.++. .++|++|++++|.+..++.. +..+++|++|++++|.+...... ...+
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~ 169 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---------------------PGAF 169 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC---------------------TTSS
T ss_pred CCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC---------------------cccc
Confidence 666665542 24566666666655555443 22344444444444433211000 0122
Q ss_pred hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (619)
Q Consensus 298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 377 (619)
..+ +|++|++++|.+++ ... . ..++|++|++++|.+++..+..+..+++|
T Consensus 170 ~~l-~L~~L~l~~n~l~~-------------------------l~~-~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTG-------------------------IPK-D---LPETLNELHLDHNKIQAIELEDLLRYSKL 219 (332)
T ss_dssp CSC-CCSCCBCCSSBCSS-------------------------CCS-S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred cCC-ccCEEECcCCCCCc-------------------------cCc-c---ccCCCCEEECCCCcCCccCHHHhcCCCCC
Confidence 333 56666666665543 211 1 12466667777777666665666677777
Q ss_pred cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
++|++++|++++..+. .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus 220 ~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENG------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp SCCBCCSSCCCCCCTT------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CEEECCCCcCCcCChh------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 7777777777776665 5777777777777777777 56666777777888888887777776666554
Q ss_pred ------CCCCCEEEcCCCccC--chhhccCCCCCCCcEEEcCCCc
Q 007082 458 ------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW 494 (619)
Q Consensus 458 ------l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~l~l~~n~ 494 (619)
.++|+.|++++|++. +..+..|..+++|+.+++++|.
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356788888888877 4566677777888888887774
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=261.39 Aligned_cols=258 Identities=16% Similarity=0.222 Sum_probs=195.9
Q ss_pred CCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082 214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (619)
Q Consensus 214 L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 291 (619)
...++..+..++.+|. .++++.|++++|.+..++.. .+..+++|++|++++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~------------------------~~~~l~~L~~L~Ls~n~i 100 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN------------------------SFKHLRHLEILQLSRNHI 100 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT------------------------TTSSCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH------------------------HhhCCCCCCEEECCCCcC
Confidence 3445555555555442 24455555555555544422 233445555555555554
Q ss_pred chh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHH
Q 007082 292 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAI 368 (619)
Q Consensus 292 ~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~ 368 (619)
+.+ ..+..+++|++|++++|.+++.....+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+
T Consensus 101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECT
T ss_pred CccChhhccCCccCCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCc
Confidence 444 345667777777777777776555555555 778888888888777654444 6688999999998 45666666
Q ss_pred HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082 369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (619)
Q Consensus 369 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (619)
..|..+++|++|++++|+++.. | .+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREI-P-------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSC-C-------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred chhhcccccCeecCCCCcCccc-c-------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 6788999999999999998754 3 4778899999999999999888999999999999999999999
Q ss_pred chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCe
Q 007082 449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRI 511 (619)
Q Consensus 449 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 511 (619)
++.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|.+.|+..|....
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 999999999999999999999999988888999999999999999999999999998876543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=250.39 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=199.4
Q ss_pred EEecCCCCCCCCCC--CCCCcEEEcCCcccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082 216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (619)
Q Consensus 216 ~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (619)
..+.+++.++.+|. .++|++|++++|.++.++. .+..+++|++|++++|.+.+.++. .+..+++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCC
Confidence 34444444444442 2355566666665555554 334566666666666665554332 2345566666666666666
Q ss_pred hh--hhhhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCCCCChHHH
Q 007082 293 RF--CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (619)
Q Consensus 293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 368 (619)
.. ..+..+++|++|++++|.+++... ..+..+ ++|++|++++| .+....+..+ +.+++|++|++++|.+++..+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCH
Confidence 55 236667777777777777765433 234444 78888888877 3555544444 568888888888888888777
Q ss_pred HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc---CCCCCCEEecCCC
Q 007082 369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHLSLRNA 445 (619)
Q Consensus 369 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n 445 (619)
..+..+++|++|++++|.+....+. .+..+++|++|++++|.+++..+..+. ....++.++++++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEI------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHH------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred HHHhccccCCeecCCCCccccchhh------------hhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 7888888899999988888655444 566788899999999988876554443 3577889999999
Q ss_pred CCCch----hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCCCeeeecccccc
Q 007082 446 SLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHPRIEVWHELSVI 520 (619)
Q Consensus 446 ~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 520 (619)
.+++. +|..+..+++|++|++++|+++......|..+++|+.|++++|++.|+|. +.++..|.............
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 339 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK 339 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcc
Confidence 98874 56778999999999999999997655557889999999999999999996 66666665332222123344
Q ss_pred cCCC
Q 007082 521 CPSD 524 (619)
Q Consensus 521 ~~~~ 524 (619)
|..|
T Consensus 340 C~~p 343 (353)
T 2z80_A 340 CSGS 343 (353)
T ss_dssp BTTT
T ss_pred cCCC
Confidence 5543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.1e-29 Score=247.63 Aligned_cols=260 Identities=18% Similarity=0.169 Sum_probs=194.1
Q ss_pred CEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (619)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 291 (619)
+.++.+++.++.+|. .+++++|++++|.+..++...+ .+++|++|++++|.+......
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------- 70 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC------------------- 70 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE-------------------
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc-------------------
Confidence 456666666666652 3467777777777777666543 666666676666666533100
Q ss_pred chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082 292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371 (619)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 371 (619)
...+..+++|++|++++|.++... ..+..+ ++|++|++++|++++......+..+++|++|++++|.+.+..+..+
T Consensus 71 --~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 71 --SQSDFGTTSLKYLDLSFNGVITMS-SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp --EHHHHSCSCCCEEECCSCSEEEEE-EEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred --ccccccccccCEEECCCCccccCh-hhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 012233444555555554443221 112222 5666666666666554332223668899999999999888777788
Q ss_pred hCCCCCcEEEccCCccCc-chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 372 SMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 372 ~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
..+++|++|++++|.+++ ..|. .+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++.
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 899999999999999987 4566 789999999999999999988889999999999999999999998
Q ss_pred hHHhhcCCCCCCEEEcCCCccCchhhccCCCC-CCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHP 509 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~ 509 (619)
.+..+..+++|+.|++++|++++..+..+..+ ++|+.|++++|++.|+|...++.+|..
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 88889999999999999999999988888888 499999999999999998888777764
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1e-28 Score=258.54 Aligned_cols=256 Identities=20% Similarity=0.242 Sum_probs=196.6
Q ss_pred CEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (619)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (619)
..++..+..++.+|. .++++.|++++|.+..+++. .+..+++|+.|++++|.++
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~------------------------~~~~l~~L~~L~Ls~n~i~ 112 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD------------------------TFRHLHHLEVLQLGRNSIR 112 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT------------------------TTTTCTTCCEEECCSSCCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH------------------------HcCCCCCCCEEECCCCccC
Confidence 445555555555542 23555555555555544322 1234445555555555444
Q ss_pred hh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHHH
Q 007082 293 RF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAIS 369 (619)
Q Consensus 293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~ 369 (619)
.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+.
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTT
T ss_pred CcChhhccCcccCCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChh
Confidence 44 346667777777777777776655555555 788888888888877654444 6789999999998 556666666
Q ss_pred HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (619)
Q Consensus 370 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (619)
.|..+++|++|++++|++++. | .+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM-P-------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC-C-------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred hccCCCCCCEEECCCCccccc-c-------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 788999999999999999865 3 47788999999999999999889999999999999999999999
Q ss_pred hhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082 450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 450 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 510 (619)
+.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|.+.|+..|...
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 9999999999999999999999998888889999999999999999999999988777643
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6.2e-28 Score=241.83 Aligned_cols=269 Identities=15% Similarity=0.148 Sum_probs=153.6
Q ss_pred CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 219 (619)
+.|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|.++++|++|++++|.++.... .+. ++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS-SCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh-hhc--ccccEEEC
Confidence 455555555555555544455555556666666555555555555556666666666655543221 111 23333333
Q ss_pred CCCCCCCCCCCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccch-hHHHhhhccCCCcEEeccCCCcchhhhh
Q 007082 220 AWTGVTKLPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINE-REAFLYIETSLLSFLDVSNSSLSRFCFL 297 (619)
Q Consensus 220 ~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 297 (619)
++|.+. .++.. +..+++|+.|++++|.+... .....+..+++|++|++++|.++.++..
T Consensus 129 ~~n~l~-------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 129 HENEIT-------------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp CSSCCC-------------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred CCCccc-------------------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 333332 22221 12333333333333333211 0011233456666666666655433110
Q ss_pred hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (619)
Q Consensus 298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 377 (619)
.. ++|++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|
T Consensus 190 -~~-------------------------~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 190 -LP-------------------------PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp -CC-------------------------TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred -cc-------------------------ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 01 345555555555555434333 457777777777777777666667778888
Q ss_pred cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC------CCCCCEEecCCCCCCc--
Q 007082 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLTD-- 449 (619)
Q Consensus 378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-- 449 (619)
++|++++|+++ .+|. .+..+++|++|++++|.+++..+..|.. .+.++.|++++|.+..
T Consensus 243 ~~L~L~~N~l~-~lp~------------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 243 RELHLNNNKLV-KVPG------------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CEEECCSSCCS-SCCT------------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred CEEECCCCcCc-cCCh------------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 88888888877 3444 5778888888888888888776666643 3678899999998764
Q ss_pred hhHHhhcCCCCCCEEEcCCCc
Q 007082 450 VSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 450 ~~~~~~~~l~~L~~L~L~~n~ 470 (619)
+.|..|..+++++.++|++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 456788889999999999885
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.5e-28 Score=242.99 Aligned_cols=262 Identities=15% Similarity=0.208 Sum_probs=149.3
Q ss_pred CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 219 (619)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+. +. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCCEEEC
Confidence 4555555555555554444555555555555555555555555555555555665555555532222 11 45566666
Q ss_pred CCCCCCCCC-----CCCCCcEEEcCCccccc--c-ccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082 220 AWTGVTKLP-----NISSLECLNLSNCTIDS--I-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (619)
Q Consensus 220 ~~n~l~~l~-----~l~~L~~L~l~~~~l~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 291 (619)
++|.+..++ .+++|++|++++|.+.. + +..+..+ +|+.|++++|.+..++...
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~------------------ 191 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL------------------ 191 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS------------------
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc------------------
Confidence 666555433 45666666666666642 2 2222233 6666666666655433211
Q ss_pred chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082 292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371 (619)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 371 (619)
.++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+
T Consensus 192 --------~~~L~~L~l~~n~i~~~~~~~l--------------------------~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 192 --------PETLNELHLDHNKIQAIELEDL--------------------------LRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp --------CSSCSCCBCCSSCCCCCCTTSS--------------------------TTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred --------cCCCCEEECCCCcCCccCHHHh--------------------------cCCCCCCEEECCCCcCCcCChhHh
Confidence 1345555555555543322222 335556666666666665555556
Q ss_pred hCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC------CCCCCEEecCCC
Q 007082 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNA 445 (619)
Q Consensus 372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n 445 (619)
..+++|++|++++|+++ .+|. .+..+++|++|++++|.+++..+..|.. ..+|+.|++++|
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~------------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPA------------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCT------------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred hCCCCCCEEECCCCcCe-ecCh------------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 66667777777777665 3444 4666777777777777777655555543 356778888888
Q ss_pred CCC--chhHHhhcCCCCCCEEEcCCCc
Q 007082 446 SLT--DVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 446 ~l~--~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
.+. +..+..|..+++|+.+++++|+
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhccccc
Confidence 776 5566777888888888888774
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.7e-29 Score=249.13 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=212.0
Q ss_pred CCCcEEEcCCcccc---ccccccCCCCCccEEeccC-ccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCC
Q 007082 231 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 304 (619)
Q Consensus 231 ~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~ 304 (619)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+.+..+. .+..+++|++|++++|.+++. ..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46777777777776 4677777888888888884 766643332 245788888888888888744 5688899999
Q ss_pred EEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC-CCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (619)
Q Consensus 305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 383 (619)
+|++++|.+++..+..+..+ ++|++|++++|++++..+..+ +.++ +|++|++++|.+++..|..+..++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999887777777777 999999999999987666666 4566 999999999999988888888887 9999999
Q ss_pred CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (619)
Q Consensus 384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 463 (619)
+|.+++..+. .+..+++|++|++++|.+++..+. +..+++|++|+|++|.+++..|..+..+++|++
T Consensus 206 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 9999988887 899999999999999999876665 788999999999999999889999999999999
Q ss_pred EEcCCCccCchhhccCCCCCCCcEEEcCCCccCCH
Q 007082 464 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 498 (619)
Q Consensus 464 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 498 (619)
|++++|++++.+|.. ..+++|+.+++++|++.|+
T Consensus 273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999988876 7789999999999998773
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-28 Score=238.67 Aligned_cols=222 Identities=16% Similarity=0.216 Sum_probs=187.7
Q ss_pred CCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCC-CCCchHHHHHhcCCCCcE
Q 007082 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEI 355 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~ 355 (619)
++++.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|. +....+..+ ..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence 3455555555555544 246677888888888888877666666666 888899998887 776655554 66899999
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435 (619)
Q Consensus 356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 435 (619)
|++++|.+++..+..+..+++|++|++++|++++..+. .|..+++|++|++++|++++..+..|..++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------HhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 99999999988888889999999999999999887766 789999999999999999977777799999
Q ss_pred CCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082 436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 514 (619)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~ 514 (619)
+|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|+|...++.+|.......
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~ 256 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS 256 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccc
Confidence 9999999999999998999999999999999999999988888889999999999999999999998888887665544
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1e-28 Score=244.97 Aligned_cols=252 Identities=16% Similarity=0.174 Sum_probs=149.3
Q ss_pred CCCcEEEccCCCCCh--hHHHHhhcCCCCCEEEcCC-CCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082 140 STLEKLWLSETGLTA--DGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 216 (619)
.++++|++++|.+++ ..+..++.+++|++|++++ |.+.+..|..|.++++|++|++++|.+++..|..|..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-- 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL-- 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC--
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC--
Confidence 355666666666554 4445556666666666663 55555555556666666666666666655555555544333
Q ss_pred EecCCCCCCCCCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhh
Q 007082 217 LNLAWTGVTKLPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC 295 (619)
Q Consensus 217 L~l~~n~l~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (619)
++|++++|.+. .+|..+..+
T Consensus 128 -----------------~~L~Ls~N~l~~~~p~~~~~l------------------------------------------ 148 (313)
T 1ogq_A 128 -----------------VTLDFSYNALSGTLPPSISSL------------------------------------------ 148 (313)
T ss_dssp -----------------CEEECCSSEEESCCCGGGGGC------------------------------------------
T ss_pred -----------------CEEeCCCCccCCcCChHHhcC------------------------------------------
Confidence 33333333333 223322223
Q ss_pred hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC
Q 007082 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375 (619)
Q Consensus 296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 375 (619)
++|++|++++|.+++..+..+..+.++|++|++++|++++..+..+ +.++ |++|++++|.+++..+..+..++
T Consensus 149 -----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 149 -----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp -----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred -----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence 3333333333333322232333321245555555555554434333 3344 77777777777766666677777
Q ss_pred CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh
Q 007082 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455 (619)
Q Consensus 376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 455 (619)
+|++|++++|++++.++. +..+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|..
T Consensus 222 ~L~~L~L~~N~l~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp CCSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred CCCEEECCCCceeeecCc-------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 788888888777765553 566778888888888887777777878888888888888887766654
Q ss_pred cCCCCCCEEEcCCCc-cCc
Q 007082 456 SSLSKLTNLSIRDAV-LTN 473 (619)
Q Consensus 456 ~~l~~L~~L~L~~n~-l~~ 473 (619)
..+++|+.+++++|+ +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 667778888888876 444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.1e-28 Score=239.57 Aligned_cols=266 Identities=20% Similarity=0.203 Sum_probs=177.8
Q ss_pred CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (619)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 220 (619)
+++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44555666666665555666677788888888888887777778888888888888888776544 6666666666666
Q ss_pred CCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcC
Q 007082 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300 (619)
Q Consensus 221 ~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 300 (619)
+|.++.++..++|++|++++|.+..++.. .+
T Consensus 89 ~n~l~~l~~~~~L~~L~l~~n~l~~~~~~-------------------------------------------------~~ 119 (317)
T 3o53_A 89 NNYVQELLVGPSIETLHAANNNISRVSCS-------------------------------------------------RG 119 (317)
T ss_dssp SSEEEEEEECTTCCEEECCSSCCSEEEEC-------------------------------------------------CC
T ss_pred CCccccccCCCCcCEEECCCCccCCcCcc-------------------------------------------------cc
Confidence 66665555555555555555555443321 12
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 380 (619)
++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.+.+++|++|++++|.+++.. ....+++|++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEE
Confidence 345555555555544433333333 566666666666666555555455677777777777777652 22347788888
Q ss_pred EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC-chhHHhhcCCC
Q 007082 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLS 459 (619)
Q Consensus 381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 459 (619)
++++|++++..+ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++ +..+..+..++
T Consensus 197 ~Ls~N~l~~l~~-------------~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 197 DLSSNKLAFMGP-------------EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp ECCSSCCCEECG-------------GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred ECCCCcCCcchh-------------hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 888888876543 4677788888888888887 45667778888888888888887 66777888888
Q ss_pred CCCEEEcCCC-ccCch
Q 007082 460 KLTNLSIRDA-VLTNS 474 (619)
Q Consensus 460 ~L~~L~L~~n-~l~~~ 474 (619)
+|+.+++++| .+++.
T Consensus 263 ~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred cceEEECCCchhccCC
Confidence 8888888753 34444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=225.72 Aligned_cols=281 Identities=19% Similarity=0.132 Sum_probs=159.0
Q ss_pred CCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCE
Q 007082 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (619)
Q Consensus 113 ~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 192 (619)
.|+.....+++++ .++.. +..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Ccccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4566666777766 44432 2222 247777777777777766556777777777777777777766666777777777
Q ss_pred EEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCcccccccc--ccCCCCCccEEeccCcc-ccch
Q 007082 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINE 269 (619)
Q Consensus 193 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~-~~~~ 269 (619)
|++++|.+++..+..|..+++|++|++++|.++.+ +. .+..+++|++|++++|. +..+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-------------------~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-------------------GETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS-------------------CSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc-------------------CchhhhccCCCCcEEECCCCcccccc
Confidence 77777777766666666666666666666655443 32 22244455555555442 2222
Q ss_pred hHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHH
Q 007082 270 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 347 (619)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 347 (619)
++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.++......+... ++|+.|++++|.+++..+..+
T Consensus 166 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l- 242 (353)
T 2z80_A 166 QRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSEL- 242 (353)
T ss_dssp CTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---
T ss_pred CHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCcccccccccc-
Confidence 211 122334444444444444333 234445555555555555544333323223 555555555555544321111
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc----hhccccchhhhhhHHhhccCCcCCEEEccCCCC
Q 007082 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF----IQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 423 (619)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 423 (619)
......+.++.++++++.+.+. +|. .+..+++|++|++++|++
T Consensus 243 ---------------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~------------~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 243 ---------------------STGETNSLIKKFTFRNVKITDESLFQVMK------------LLNQISGLLELEFSRNQL 289 (353)
T ss_dssp -------------------------CCCCCCEEEEESCBCCHHHHHHHHH------------HHHTCTTCCEEECCSSCC
T ss_pred ---------------------ccccccchhhccccccccccCcchhhhHH------------HHhcccCCCEEECCCCCC
Confidence 0112345556666666655442 333 567777888888888877
Q ss_pred CCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082 424 SDATLFPLSTFKELIHLSLRNASLTDVSL 452 (619)
Q Consensus 424 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (619)
+...+..|..+++|++|+|++|.+++..+
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 74433345777888888888888777543
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=7.2e-26 Score=224.28 Aligned_cols=241 Identities=19% Similarity=0.283 Sum_probs=169.9
Q ss_pred CCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcccccc---ccccCCCCCccEEec
Q 007082 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISL 261 (619)
Q Consensus 190 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l 261 (619)
-+.++.+++.++... ..+ .++|+.|++++|.++.++ .+++|++|++++|.+..+ +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCC-SCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCC-CCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357888888877543 322 368999999999998654 678999999999998855 455557788888888
Q ss_pred cCccccchhHHHhhhccCCCcEEeccCCCcchhh---hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCC
Q 007082 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338 (619)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 338 (619)
++|.+..++.. +..+++|++|++++|.++... .+..+ ++|++|++++|.+
T Consensus 86 s~n~i~~l~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-------------------------~~L~~L~l~~n~l 138 (306)
T 2z66_A 86 SFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------------------------RNLIYLDISHTHT 138 (306)
T ss_dssp CSCSEEEEEEE--EETCTTCCEEECTTSEEESSTTTTTTTTC-------------------------TTCCEEECTTSCC
T ss_pred CCCccccChhh--cCCCCCCCEEECCCCcccccccchhhhhc-------------------------cCCCEEECCCCcC
Confidence 88877765543 334555555555555554431 23333 5555555555555
Q ss_pred CCchHHHHHhcCCCCcEEEccCCCCCh-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEE
Q 007082 339 SSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN 417 (619)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 417 (619)
.+..+..+ +.+++|++|++++|.+++ ..+..+..+++|++|++++|++++..+. .+..+++|++|+
T Consensus 139 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~ 205 (306)
T 2z66_A 139 RVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLN 205 (306)
T ss_dssp EECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEE
T ss_pred Cccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH------------HhcCCCCCCEEE
Confidence 44433333 456777777777777765 3455667778888888888888777666 677788888888
Q ss_pred ccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCC-CCCEEEcCCCccCc
Q 007082 418 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTN 473 (619)
Q Consensus 418 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 473 (619)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|++|+|++|++++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 888888776666777788888888888888887777777774 78888888888765
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-26 Score=225.75 Aligned_cols=246 Identities=17% Similarity=0.198 Sum_probs=202.4
Q ss_pred CcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC
Q 007082 233 LECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311 (619)
Q Consensus 233 L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 311 (619)
++..+++.+.+...+..++ .+++|++|++++|.+...++. .+..+++|++|++++|.+++...+..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 4455666666665555554 667888888888888876643 34678899999999998887766888999999999999
Q ss_pred CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcch
Q 007082 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (619)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 391 (619)
.+++.. .. ++|++|++++|++++..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 91 ~l~~l~-----~~-~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 91 YVQELL-----VG-PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp EEEEEE-----EC-TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cccccc-----CC-CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 887644 22 899999999999988754 34789999999999999988878889999999999999999876
Q ss_pred hccccchhhhhhHHhh-ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 392 QQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 392 ~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
+. .+ ..+++|++|++++|.+++. + ....+++|++|+|++|.++++++. +..+++|+.|++++|+
T Consensus 161 ~~------------~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 161 FA------------ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK 225 (317)
T ss_dssp GG------------GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC
T ss_pred HH------------HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCc
Confidence 66 44 5789999999999999865 2 334589999999999999997654 8899999999999999
Q ss_pred cCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHH
Q 007082 471 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 505 (619)
Q Consensus 471 l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 505 (619)
+++. |..+..+++|+.|++++|++.|++...++.
T Consensus 226 l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 226 LVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred ccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 9964 667888999999999999999887655543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.6e-25 Score=233.98 Aligned_cols=266 Identities=19% Similarity=0.193 Sum_probs=147.0
Q ss_pred CCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEE
Q 007082 115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 194 (619)
Q Consensus 115 ~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 194 (619)
.++++|++++| .++. .+..+. ++|++|++++|.++..+. .+++|++|++++|.+++... .+++|++|+
T Consensus 40 ~~l~~L~ls~n-~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSS-CCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCC-CcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 35777777777 4442 222222 567777777776664322 45566666666666554321 455666666
Q ss_pred ccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHH
Q 007082 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273 (619)
Q Consensus 195 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 273 (619)
+++|.+++... .+++|+.|++++|.++.++. +++|++|++++|.+..+|.
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~------------------------- 158 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA------------------------- 158 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------------------------
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-------------------------
Confidence 66665554322 34455555555555544442 2444444444444443332
Q ss_pred hhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCC
Q 007082 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353 (619)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 353 (619)
..++|+.|++++|.++.++ ..+++|+.|++++|.+++... ..++|+.|++++|.++... ..+++|
T Consensus 159 ---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~-----~~~~~L 223 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-----ALPSGL 223 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC-----CCCTTC
T ss_pred ---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC-----CCCCCC
Confidence 1234444444444444433 334556666666665554221 1156666666666666542 124667
Q ss_pred cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 433 (619)
Q Consensus 354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 433 (619)
++|++++|.+++.+ ..+++|++|++++|+++... . .+++|+.|+|++|+++ .+|..+..
T Consensus 224 ~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp-~---------------~~~~L~~L~Ls~N~L~-~lp~~l~~ 282 (622)
T 3g06_A 224 KELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLP-M---------------LPSGLLSLSVYRNQLT-RLPESLIH 282 (622)
T ss_dssp CEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC-C---------------CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred CEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCC-c---------------ccccCcEEeCCCCCCC-cCCHHHhh
Confidence 77777777666533 34566777777777665422 1 3456777777777776 45666667
Q ss_pred CCCCCEEecCCCCCCchhHHhhcC
Q 007082 434 FKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
+++|+.|+|++|.+++..+..+..
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHHHh
Confidence 777777777777777766665544
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.1e-24 Score=231.36 Aligned_cols=261 Identities=18% Similarity=0.182 Sum_probs=141.1
Q ss_pred CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-CCCCCcEEEcCCccc
Q 007082 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTI 243 (619)
Q Consensus 165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~l~~L~~L~l~~~~l 243 (619)
+++.|++++|.++.. |..+. ++|++|++++|.++...+ .+++|++|++++|.++.++ .+++|++|++++|.+
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcC
Confidence 355555555555422 22222 455556665555553222 3455555555555555544 345666666666666
Q ss_pred cccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHh
Q 007082 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323 (619)
Q Consensus 244 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 323 (619)
..+|. .+++|+.|++++|.+..++. .+++|++|++++|.++.++. .+++|+.|++++|.+++.. .
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~-----~ 178 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP-----M 178 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC-----C
T ss_pred CCCCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc-----c
Confidence 65555 34566666666666665443 13566666666666655432 3456666666666665533 1
Q ss_pred cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhh
Q 007082 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403 (619)
Q Consensus 324 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 403 (619)
.+++|+.|++++|.+++... .+++|+.|++++|.++..+ ..+++|++|++++|++++.. .
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp-~---------- 238 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP-V---------- 238 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC-C----------
T ss_pred cCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC-C----------
Confidence 22566666666666655321 2456666666666655432 12355666666666655421 1
Q ss_pred HHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 477 (619)
Q Consensus 404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 477 (619)
.+++|++|++++|.+++ +|. .+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++++..+.
T Consensus 239 -----~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 239 -----LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -----CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHH
Confidence 23556666666666553 232 345566666666666543 44555566666666666666655444
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.2e-26 Score=220.24 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=171.7
Q ss_pred CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 357 (619)
++++|++++|.++.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence 455555555555544 256667778888888877776665556555 788888888888877655554 5688999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
+++|.+.+..+..+..+++|++|++++|.+++. +|. .+..+++|++|++++|++++..+..+..+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 999998887766688899999999999999874 466 7899999999999999999877778877777
Q ss_pred CC----EEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCC
Q 007082 437 LI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP 509 (619)
Q Consensus 437 L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~ 509 (619)
|+ .|++++|.++++.+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHH
Confidence 77 8999999999987766654 489999999999998877778889999999999999999995 555556543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=225.91 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=160.3
Q ss_pred CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC-----CCCCCCCcEEEcCCccccccccc-cCCCCCccEEecc
Q 007082 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLA 262 (619)
Q Consensus 189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~ 262 (619)
..+.++..+..++. +|..+ .++++.|++++|.++. +.++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45678888887774 34333 3689999999999875 44788999999999999887754 3477788888888
Q ss_pred CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCC-CCCc
Q 007082 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSA 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 341 (619)
+|.+..++.. .+..+++|++|++++|.+ +......+..+ ++|++|++++|. +...
T Consensus 121 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~i----------------------~~~~~~~~~~l-~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNG-AFVYLSKLKELWLRNNPI----------------------ESIPSYAFNRI-PSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSCCTT-TSCSCSSCCEEECCSCCC----------------------CEECTTTTTTC-TTCCEEECCCCTTCCEE
T ss_pred CCcCCeeCHh-HhhccccCceeeCCCCcc----------------------cccCHHHhhhC-cccCEeCCCCCCCccee
Confidence 7777765542 233444555555555544 44333333333 555555555532 2222
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCC
Q 007082 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421 (619)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 421 (619)
.... +..+++|++|++++|.++..+ .+..+++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus 177 ~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 177 SEGA-FEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPG------------SFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CTTT-TTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTC
T ss_pred Ccch-hhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChh------------hhccCccCCEEECCCC
Confidence 2222 245666777777776666543 356677777777777777766666 6777777777777777
Q ss_pred CCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
++++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777766777777777777777777777777667777777777777777653
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.6e-25 Score=231.29 Aligned_cols=225 Identities=19% Similarity=0.200 Sum_probs=180.6
Q ss_pred CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEE
Q 007082 253 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 332 (619)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 332 (619)
+++|+.|++++|.+.+.++. .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+ . ++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~-~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----G-PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----C-TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----C-CCcCEEE
Confidence 34666666666666655432 345667777777777777666457778888888888888776442 2 7899999
Q ss_pred ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc-cCC
Q 007082 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NLN 411 (619)
Q Consensus 333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~-~l~ 411 (619)
+++|.+++..+ ..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|. .+. .++
T Consensus 106 L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~~l~ 169 (487)
T 3oja_A 106 AANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------------ELAASSD 169 (487)
T ss_dssp CCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------------GGGGGTT
T ss_pred CcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------------HHhhhCC
Confidence 99999988754 3478999999999999998888888999999999999999988776 554 789
Q ss_pred cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcC
Q 007082 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491 (619)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~ 491 (619)
+|++|+|++|.+++. ..+..+++|+.|+|++|.++++++. +..+++|+.|+|++|.+++ +|..+..+++|+.++++
T Consensus 170 ~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred cccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 999999999999865 2344689999999999999997664 8889999999999999997 46668888999999999
Q ss_pred CCccCCHHHHHHH
Q 007082 492 GGWLLTEDAILQF 504 (619)
Q Consensus 492 ~n~~~~~~~~~~~ 504 (619)
+|++.|++...++
T Consensus 246 ~N~l~c~~~~~~~ 258 (487)
T 3oja_A 246 GNGFHCGTLRDFF 258 (487)
T ss_dssp TCCBCHHHHHHHH
T ss_pred CCCCcCcchHHHH
Confidence 9999988765444
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.1e-25 Score=213.64 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=175.2
Q ss_pred CcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC
Q 007082 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360 (619)
Q Consensus 281 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 360 (619)
.+.++++++.++.++. .-.+++++|++++|.+++..+..+..+ ++|++|++++|.++......+ +.+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECCC
Confidence 4555555555555422 112567788888777776655555555 788888888888877654433 6689999999999
Q ss_pred CCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEE
Q 007082 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 440 (619)
Q Consensus 361 n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 440 (619)
|.+++..+..|..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 999988877888999999999999999988777 78999999999999999998777778999999999
Q ss_pred ecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (619)
Q Consensus 441 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~ 508 (619)
+|++|.++++.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|. +.++.+|.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l 231 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence 999999999888889999999999999999998887788889999999999999999995 55555554
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.1e-25 Score=214.36 Aligned_cols=213 Identities=24% Similarity=0.264 Sum_probs=170.3
Q ss_pred cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 357 (619)
+++++.++++++.++.++. .-.++++.|++++|.+++..+..+..+ ++|+.|++++|.+++.... +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEEE
Confidence 3444455555554444421 112567777777777776666666655 7788888888777765432 4688999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCC
Q 007082 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437 (619)
Q Consensus 358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 437 (619)
+++|.++.. |..+..+++|++|++++|++++..+. .|.++++|++|++++|++++..+..|..+++|
T Consensus 84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 999998854 44577899999999999999988777 79999999999999999998888888999999
Q ss_pred CEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082 438 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (619)
Q Consensus 438 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 509 (619)
+.|+|++|+++++++..|..+++|+.|+|++|+++.. |..+.....|+.+++++|||.|+|.+.++.+|..
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 9999999999998888889999999999999999954 5666677899999999999999999888877753
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.8e-24 Score=226.24 Aligned_cols=242 Identities=19% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC-----CCCCCCCcEEEcCCccccccccc-cCCCCCccEEecc
Q 007082 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLA 262 (619)
Q Consensus 189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~ 262 (619)
....++.++..++. +|..+ .++++.|++++|.++. +.++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45678888877765 34333 3689999999999885 44789999999999999987754 4478888888888
Q ss_pred CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCc
Q 007082 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSA 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 341 (619)
+|.+..++.. .+..+++|++|++++|.++.+ ....+..+ ++|+.|++++| .+...
T Consensus 132 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~l-~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSG-AFEYLSKLRELWLRNNPIESI----------------------PSYAFNRV-PSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSBCCTT-TSSSCTTCCEEECCSCCCCEE----------------------CTTTTTTC-TTCCEEECCCCTTCCEE
T ss_pred CCcCCccChh-hhcccCCCCEEECCCCCccee----------------------CHhHHhcC-CcccEEeCCCCCCcccc
Confidence 8887766543 233445555555555544443 33333333 45555555542 22222
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCC
Q 007082 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421 (619)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 421 (619)
.... +..+++|++|++++|.+++.. .+..+++|++|++++|++++..+. .|.++++|++|++++|
T Consensus 188 ~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 188 SEGA-FEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CTTT-TTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTS
T ss_pred Chhh-ccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCC
Confidence 2222 245666777777777666542 355677777777777777776666 6777777777777777
Q ss_pred CCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
++++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777666777777777777777777777776666777777777777777654
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.5e-25 Score=219.97 Aligned_cols=231 Identities=16% Similarity=0.150 Sum_probs=131.9
Q ss_pred CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcC
Q 007082 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSS 310 (619)
Q Consensus 232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~ 310 (619)
.++.|++++|.+..+|+.++.+++|++|++++|.+..++.. +..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 44444444444444555444555555555555555433321 22444455555555544433 3455566666666666
Q ss_pred CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (619)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~ 390 (619)
|.+.+..+.. +....+.+. ++.+++|++|++++|.++. .|..+..+++|++|++++|++++.
T Consensus 160 n~~~~~~p~~-------~~~~~~~~~----------~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 160 CPELTELPEP-------LASTDASGE----------HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp ETTCCCCCSC-------SEEEC-CCC----------EEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCccccChh-------Hhhccchhh----------hccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC
Confidence 5444332221 111111100 1346666666666666663 344466666777777777766653
Q ss_pred hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
|. .+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|+
T Consensus 222 -~~------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 -GP------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp -CG------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred -ch------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 22 46666677777777776666666666677777777777776666666666677777777777777
Q ss_pred cCchhhccCCCCCCCcEEEcCCCcc
Q 007082 471 LTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 471 l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
+.+.+|..+..+++++.+++..+.+
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred chhhccHHHhhccCceEEeCCHHHH
Confidence 7766676676677777777666554
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2e-24 Score=211.52 Aligned_cols=222 Identities=18% Similarity=0.242 Sum_probs=159.4
Q ss_pred CEEecCCCCCCCCC--CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082 215 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (619)
Q Consensus 215 ~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 291 (619)
+.++.+++.++.+| -.+++++|++++|.+..++.. +..+++|++|++++|.+.++.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------- 73 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-------------------- 73 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------------------
Confidence 45566666666555 234566666666666655533 3345555555555554443322
Q ss_pred chhhhhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082 292 SRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (619)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 370 (619)
..+..+++|++|++++|. +++..+..+..+ ++|++|++++|.+++..+..+ +.+++|++|++++|.+++..+..
T Consensus 74 ---~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 74 ---AAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp ---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTT
T ss_pred ---hhcCCccCCCEEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhH
Confidence 345566777777777775 665555555555 778888888887777655444 56888888888888888777777
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
+..+++|++|++++|++++..+. .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hccCCCccEEECCCCcccccCHH------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 78888888888888888876665 678888888888888888887788888888888888888888888
Q ss_pred hHHhhcCCCCCCEEEcCCCccCc
Q 007082 451 SLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 451 ~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
.+..+..+++|+.|++++|++..
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHcccCcccCEEeccCCCccC
Confidence 87888888888889998888764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-25 Score=234.99 Aligned_cols=234 Identities=21% Similarity=0.217 Sum_probs=112.9
Q ss_pred CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCcccc
Q 007082 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 244 (619)
Q Consensus 165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~ 244 (619)
+|++|+|++|.+.+..+..|..+++|++|++++|.+++..+ |..+++|++|++++|.++.++..++|++|++++|.+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 66666666666666656666666666777766666665443 4454444444444444443333333333333333333
Q ss_pred ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhc
Q 007082 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (619)
Q Consensus 245 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 324 (619)
.++. ..+++|++|++++|.+++..+..+..+
T Consensus 113 ~~~~-------------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l 143 (487)
T 3oja_A 113 RVSC-------------------------------------------------SRGQGKKNIYLANNKITMLRDLDEGCR 143 (487)
T ss_dssp CEEE-------------------------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGG
T ss_pred CCCc-------------------------------------------------cccCCCCEEECCCCCCCCCCchhhcCC
Confidence 2211 112345555555555544433333333
Q ss_pred CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (619)
Q Consensus 325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~ 404 (619)
++|+.|++++|.+++..+..+.+.+++|++|++++|.+++..+ ...+++|++|+|++|.+++..+
T Consensus 144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~------------ 208 (487)
T 3oja_A 144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP------------ 208 (487)
T ss_dssp -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG------------
T ss_pred -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH------------
Confidence 4455555555555544444433345555555555555554321 2234555555555555544332
Q ss_pred HhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC-chhHHhhcCCCCCCEEEc
Q 007082 405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSI 466 (619)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 466 (619)
.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.+++
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 24444555555555555542 3444444555555555555554 333444444444444444
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.4e-25 Score=222.55 Aligned_cols=246 Identities=20% Similarity=0.137 Sum_probs=184.8
Q ss_pred CCCcEEEcCCccccccccccCCCCCccEEeccCccccc--hhHH-----HhhhccCCCcEEeccCCCcchh--hhh--hc
Q 007082 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREA-----FLYIETSLLSFLDVSNSSLSRF--CFL--TQ 299 (619)
Q Consensus 231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~-----~~~~~~~~L~~L~l~~n~l~~~--~~~--~~ 299 (619)
++|+.|++++|.+ .+|..+... |+.|++++|.+.. .+.. ..+..+++|++|++++|.+++. ..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4455566666666 555544432 6666777666643 1111 1222578888888888888754 222 78
Q ss_pred CCCCCEEeCcCCCCChhHHHHHHhc----CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH--HHHh--
Q 007082 300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYM-- 371 (619)
Q Consensus 300 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-- 371 (619)
+++|++|++++|.+++. +..+..+ .++|++|++++|++++..+..+ +.+++|++|++++|++.+.. +..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 89999999999999876 4444443 2789999999999998866665 67999999999999988752 3344
Q ss_pred hCCCCCcEEEccCCccCcch--hccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCC
Q 007082 372 SMMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLT 448 (619)
Q Consensus 372 ~~~~~L~~L~L~~n~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 448 (619)
..+++|++|++++|++++.. +. ..+..+++|++|++++|++++..| ..+..+++|++|+|++|.++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCS-----------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHH-----------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHH-----------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 78999999999999998432 21 146788999999999999998764 45667899999999999999
Q ss_pred chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 449 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
.+ |..+. ++|++|++++|++++. |. +..+++|+.|++++|++..
T Consensus 267 ~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 64 44544 8999999999999987 54 8889999999999999853
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9e-25 Score=217.80 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=164.1
Q ss_pred ccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcE
Q 007082 277 ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 355 (619)
..+.++.|++++|.++.+ ..+..+++|++|++++|.++ ..+..+..+ ++|++|++++|.++.. +..+ +.+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLRAL-PASI-ASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCCCC-CGGG-GGCTTCCE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccccC-cHHH-hcCcCCCE
Confidence 346666667766666655 34556777777777777776 344445555 7888888888877744 3333 56888888
Q ss_pred EEccCCCCChHHHHHhh---------CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082 356 LSLSGTQIDDYAISYMS---------MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426 (619)
Q Consensus 356 L~l~~n~l~~~~~~~~~---------~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 426 (619)
|++++|++.+..|..+. .+++|++|++++|+++ .+|. .+..+++|++|++++|.+++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~------------~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA------------SIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG------------GGGGCTTCCEEEEESSCCCC-
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH------------hhcCCCCCCEEEccCCCCCc-
Confidence 88888776666555444 4999999999999998 5666 78999999999999999995
Q ss_pred CcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 427 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 427 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+..|..+..+++|+.|++++|++..
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 56679999999999999999999999999999999999999999999999999999999999999999865
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2e-25 Score=221.32 Aligned_cols=250 Identities=20% Similarity=0.191 Sum_probs=162.5
Q ss_pred hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC--CC-----------CCCCCcEEEcCCcccc-cccccc
Q 007082 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP-----------NISSLECLNLSNCTID-SILEGN 250 (619)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--l~-----------~l~~L~~L~l~~~~l~-~l~~~~ 250 (619)
+..++|++|++++|.+ ..|..+... |+.|++++|.+.. ++ ++++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456777788888877 344444332 6666777666642 11 3566677777776666 355544
Q ss_pred --CCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCC
Q 007082 251 --ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 328 (619)
Q Consensus 251 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 328 (619)
..+++|++|++++|.+.+.+..+ ..+ ....+++|++|++++|.+++..+..+..+ ++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l-----------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWL--AEL-----------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHH--HHH-----------------HTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSC
T ss_pred HHhcCCCccEEEccCCCCcchhHHH--HHH-----------------HHhhcCCCcEEEeeCCCCccchHHHhccC-CCC
Confidence 45666666666666666553221 111 00011555555555555555444444444 566
Q ss_pred cEEEccCCCCCCch--HHHH-HhcCCCCcEEEccCCCCCh---HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhh
Q 007082 329 RNLNLSNTRFSSAG--VGIL-AGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402 (619)
Q Consensus 329 ~~L~L~~n~l~~~~--~~~~-~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 402 (619)
++|++++|++.+.. +..+ ++.+++|++|++++|.+++ .....+..+++|++|++++|++++..|..
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 247 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-------- 247 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--------
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--------
Confidence 66666666554421 1111 2567888888888888883 33345567889999999999988866431
Q ss_pred hHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 403 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
.+..+++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++.
T Consensus 248 ---~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 ---SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ---CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ---hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 4667889999999999998 6676665 8899999999999987 44 88899999999999998763
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.6e-23 Score=211.83 Aligned_cols=248 Identities=17% Similarity=0.222 Sum_probs=171.5
Q ss_pred CCccccccccccCCCCCccEEeccCccccchhHHH---hhhccCCCcEEeccCCCcchh------------hhhhcCCCC
Q 007082 239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSRF------------CFLTQMKAL 303 (619)
Q Consensus 239 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~~L 303 (619)
+...+..++..+..+++|++|++++|.+....... .+..+++|++|++++|.+..+ ..+..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 33344444455555556666666666555432211 133556666666666533211 234677888
Q ss_pred CEEeCcCCCCCh----hHHHHHHhcCCCCcEEEccCCCCCCchHHHHHh---cC---------CCCcEEEccCCCCCh-H
Q 007082 304 EHLDLSSSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-Y 366 (619)
Q Consensus 304 ~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~~---------~~L~~L~l~~n~l~~-~ 366 (619)
++|++++|.+++ ..+..+... ++|++|++++|.+++..+..+.. .+ ++|++|++++|.++. .
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 888888888877 344555555 88888888888887654444322 22 889999999998873 3
Q ss_pred HH---HHhhCCCCCcEEEccCCccCc-----chhccccchhhhhhHHhhccCCcCCEEEccCCCCC----CCCcccccCC
Q 007082 367 AI---SYMSMMPSLKFIDISNTDIKG-----FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS----DATLFPLSTF 434 (619)
Q Consensus 367 ~~---~~~~~~~~L~~L~L~~n~~~~-----~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l 434 (619)
.+ ..+..+++|++|++++|+++. ..+. .+..+++|++|+|++|.++ ..++..+..+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~------------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE------------GLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT------------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH------------HhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 33 356678899999999998873 2332 5778889999999999885 4567778888
Q ss_pred CCCCEEecCCCCCCch----hHHhhcC--CCCCCEEEcCCCccCc----hhhccC-CCCCCCcEEEcCCCccCCHH
Q 007082 435 KELIHLSLRNASLTDV----SLHQLSS--LSKLTNLSIRDAVLTN----SGLGSF-KPPRSLKLLDLHGGWLLTED 499 (619)
Q Consensus 435 ~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~ 499 (619)
++|++|+|++|.+++. ++..+.. +++|+.|+|++|.+++ ..+..+ ..+++|+.|++++|++....
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999998886 4455533 8899999999999988 355555 55789999999999987654
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.9e-22 Score=205.08 Aligned_cols=260 Identities=17% Similarity=0.123 Sum_probs=153.4
Q ss_pred HHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCC--CCChhhHhh-------hcCCCCCcEEEcc
Q 007082 82 WMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCV--KVTDAGMKH-------LLSISTLEKLWLS 148 (619)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~--~l~~~~~~~-------l~~l~~L~~L~L~ 148 (619)
+...+..+++|++|+|++|. ++...+.. +.++++|++|+|++|. .+++..+.. +..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34456677778888888776 66665544 4467788888887762 222222222 3567788888888
Q ss_pred CCCCCh----hHHHHhhcCCCCCEEEcCCCCCChhHHHHhhc----C---------CCCCEEEccCCccCc-hhh---Hh
Q 007082 149 ETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV----L---------TKLEYLDLWGSQVSN-RGA---AV 207 (619)
Q Consensus 149 ~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~----l---------~~L~~L~l~~n~i~~-~~~---~~ 207 (619)
+|.++. ..+..+..+++|++|+|++|.+.+..+..+.. + ++|++|++++|.+++ ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 877776 34556677778888888888776554444433 3 778888888777762 233 34
Q ss_pred hcCCCCCCEEecCCCCCC----------CCCCCCCCcEEEcCCccc-----cccccccCCCCCccEEeccCccccchhHH
Q 007082 208 LKMFPRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTI-----DSILEGNENKAPLAKISLAGTTFINEREA 272 (619)
Q Consensus 208 ~~~~~~L~~L~l~~n~l~----------~l~~l~~L~~L~l~~~~l-----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (619)
+..+++|+.|++++|.++ .+..+++|++|++++|.+ ..++..+..+++|+.|++++|.+......
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 556666666666666655 233445555555555555 23444444444444444444444332111
Q ss_pred HhhhccCCCcEEeccCCCcchhhhhh--cCCCCCEEeCcCCCCChh----HHHHHHhcCCCCcEEEccCCCCCCchH--H
Q 007082 273 FLYIETSLLSFLDVSNSSLSRFCFLT--QMKALEHLDLSSSMIGDD----SVEMVACVGANLRNLNLSNTRFSSAGV--G 344 (619)
Q Consensus 273 ~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~--~ 344 (619)
.. ...+. .+++|++|++++|.+++. .+..+...+++|+.|++++|++++..+ .
T Consensus 263 ~l-------------------~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~ 323 (386)
T 2ca6_A 263 AV-------------------VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323 (386)
T ss_dssp HH-------------------HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHH
T ss_pred HH-------------------HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHH
Confidence 00 02232 267788888888887773 444442323788888888888877653 4
Q ss_pred HHHhcCCCCcEEEccCC
Q 007082 345 ILAGHLPNLEILSLSGT 361 (619)
Q Consensus 345 ~~~~~~~~L~~L~l~~n 361 (619)
.+...+++++.+++...
T Consensus 324 ~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 324 EIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHTCCEECCC
T ss_pred HHHHHhhhcCcchhhhc
Confidence 55455566555555543
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.3e-23 Score=197.74 Aligned_cols=191 Identities=17% Similarity=0.254 Sum_probs=164.8
Q ss_pred CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 007082 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (619)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 381 (619)
..++++++++.++..+.. ..+.++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~----~~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG----IPADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSC----CCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCC----CCCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456677777766643321 12678888888888888766555 6689999999999999998888889999999999
Q ss_pred ccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCC
Q 007082 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461 (619)
Q Consensus 382 L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 461 (619)
+++|++++..+. .|..+++|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|..+++|
T Consensus 90 L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 90 LANNQLASLPLG------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp CTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcccccChh------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 999999988777 78999999999999999998877788999999999999999999888889999999
Q ss_pred CEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCH-HHHHHHHHhCC
Q 007082 462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DAILQFCKMHP 509 (619)
Q Consensus 462 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~~ 509 (619)
+.|+|++|++++..+..+..+++|+.|++++|+|.|+ |.+.++..|..
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 9999999999998888899999999999999999998 88888877653
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6e-22 Score=198.92 Aligned_cols=255 Identities=21% Similarity=0.240 Sum_probs=171.5
Q ss_pred CCCCEEEccCCccCchhhHhhcCC--CCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCcc
Q 007082 188 TKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265 (619)
Q Consensus 188 ~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 265 (619)
..++.++++++.+. +..+..+ ++++.| ++++|.+...+..++.+++|++|++++|.
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L-------------------~l~~n~l~~~~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAF-------------------RCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEE-------------------ECTTCEECSCCCSCCCCBCCCEEECTTCE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEE-------------------EcCCccccccchhhccCCCCCEEEccCCC
Confidence 34778888887765 2333333 444444 44455545444445566667777777666
Q ss_pred ccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCC-CCChhHHHH-HHhcCCCCcEEEccCC-CCCC
Q 007082 266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEM-VACVGANLRNLNLSNT-RFSS 340 (619)
Q Consensus 266 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~L~~L~L~~n-~l~~ 340 (619)
+........+..+++|++|++++|.++.. ..+..+++|++|++++| .+++..... +..+ ++|++|++++| .+++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTE 183 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence 55432222344667777777777766543 45677888888888888 677754444 4444 88888888888 8887
Q ss_pred chHHHHHhcCC-CCcEEEccCC--CCC-hHHHHHhhCCCCCcEEEccCCc-cCcchhccccchhhhhhHHhhccCCcCCE
Q 007082 341 AGVGILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLER 415 (619)
Q Consensus 341 ~~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 415 (619)
......++.++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..+. .+..+++|++
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------~l~~l~~L~~ 251 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------EFFQLNYLQH 251 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------GGGGCTTCCE
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------HHhCCCCCCE
Confidence 65455556788 8999999888 566 4455667788899999999888 6655555 6788889999
Q ss_pred EEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCC
Q 007082 416 LNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 480 (619)
Q Consensus 416 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 480 (619)
|++++|. +.......+..+++|+.|++++| ++......+. .+++.|++++|++++..|..+.
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 9999884 44333346778889999999988 5554333332 2355556888999887776654
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.6e-23 Score=200.78 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=169.0
Q ss_pred CCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc
Q 007082 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (619)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 359 (619)
.+..+.+..+.+........+++|+.|++++|.++... .+..+ ++|++|++++|.+++.. .+ +.+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--AL-KELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--GG-TTCTTCCEEECT
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--hh-cCCCCCCEEECC
Confidence 34445555665555555666778888888888776532 34444 88888888888887753 23 678999999999
Q ss_pred CCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCE
Q 007082 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 439 (619)
Q Consensus 360 ~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 439 (619)
+|.+++..+..+..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..+..+++|+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 9999988877788999999999999999887776 6889999999999999999887777889999999
Q ss_pred EecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH
Q 007082 440 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 500 (619)
Q Consensus 440 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 500 (619)
|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|+|.
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9999999999888888999999999999999999888888889999999999999999874
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.1e-22 Score=194.03 Aligned_cols=163 Identities=19% Similarity=0.315 Sum_probs=127.7
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+..+++|++|++++|.++......+..+ ++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..|..+++
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 4445556666666655554443333334 667777777777666544333 56888999999999888887777888999
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
|++|++++|.+++..+. .|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.
T Consensus 135 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp CCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCEEECCCCcCCccCHh------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 99999999999877666 688899999999999999987777888999999999999999998887888
Q ss_pred CCCCCCEEEcCCCccCc
Q 007082 457 SLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~ 473 (619)
.+++|+.|+|++|++..
T Consensus 203 ~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCBCC
T ss_pred cccCCCEEEecCCCeeC
Confidence 99999999999998753
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.5e-22 Score=197.12 Aligned_cols=182 Identities=19% Similarity=0.242 Sum_probs=140.1
Q ss_pred ccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCc
Q 007082 277 ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 354 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 354 (619)
.+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.....+ +.+++|+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~ 127 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLK 127 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCC
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCC
Confidence 444555555555555444 246667788888888887777666666665 788888888888877644333 6689999
Q ss_pred EEEccCCCCChH-HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCC----EEEccCCCCCCCCcc
Q 007082 355 ILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE----RLNLEQTQVSDATLF 429 (619)
Q Consensus 355 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~ 429 (619)
+|++++|.+++. .+..+..+++|++|++++|++++..+. .+..+++|+ +|++++|.+++..+.
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------------DLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG------------GGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH------------HhhhhhhccccceeeecCCCcccccCcc
Confidence 999999998874 367788999999999999999887665 555555555 899999999866555
Q ss_pred cccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
.+. ..+|+.|++++|.+++.++..|..+++|+.|++++|+++.
T Consensus 196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 554 4589999999999999888888999999999999999874
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.6e-22 Score=196.25 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=130.3
Q ss_pred ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 356 (619)
.+++|+.|++++|.++..+.+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEE
Confidence 4456666666666666655566666777777777666653 233333 667777777777766544333 456777777
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
++++|.+++..+..+..+++|++|++++|++++..+. .+..+++|++|++++|++++..+..+..+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 7777777766666666777777777777777766555 5667777777777777777666666677777
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
|++|++++|.+++..+..+..+++|+.|++++|++.+. ++.++.++++.|.+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 77777777777776666677777777777777766532 34566666655554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.2e-21 Score=192.74 Aligned_cols=221 Identities=18% Similarity=0.228 Sum_probs=124.5
Q ss_pred CCcEEEcCCccccccccccCCC--CCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEE
Q 007082 232 SLECLNLSNCTIDSILEGNENK--APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHL 306 (619)
Q Consensus 232 ~L~~L~l~~~~l~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L 306 (619)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. ...+++|++|++++|.++.. ..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677777777665 2233333 5677777777666655443 22456666666666665432 345556666666
Q ss_pred eCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCC-CCChH-HHHHhhCCC-CCcEEEc
Q 007082 307 DLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMP-SLKFIDI 382 (619)
Q Consensus 307 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L 382 (619)
++++|.+++..+..+..+ ++|++|++++| .+++......++.+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 666666666555555554 66666666666 4554333333355666666666666 66553 344455566 6666666
Q ss_pred cCC--ccC-cchhccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCC-CCCchhHHhhcC
Q 007082 383 SNT--DIK-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSS 457 (619)
Q Consensus 383 ~~n--~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 457 (619)
++| .++ +.++. .+..+++|++|++++|. +++..+..+..+++|++|++++| .++......+..
T Consensus 203 ~~~~~~~~~~~l~~------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 203 SGYRKNLQKSDLST------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp CSCGGGSCHHHHHH------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred CCCcccCCHHHHHH------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 666 333 22333 44556666666666665 45455555555666666666666 333332234555
Q ss_pred CCCCCEEEcCCC
Q 007082 458 LSKLTNLSIRDA 469 (619)
Q Consensus 458 l~~L~~L~L~~n 469 (619)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 566666666655
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-21 Score=198.34 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=57.3
Q ss_pred EEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhH----hhhcCCC-CCcEEEccCCCCChhHHHHhhcC-----C
Q 007082 95 LNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSIS-TLEKLWLSETGLTADGIALLSSL-----Q 164 (619)
Q Consensus 95 L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~ 164 (619)
++++++. ++...+..+...++|++|+|++| .+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4555554 55444444444445666666666 4554444 4445555 56666666666655444444332 5
Q ss_pred CCCEEEcCCCCCChhHHHHh----hcC-CCCCEEEccCCccCchhh
Q 007082 165 NLSVLDLGGLPVTDLVLRSL----QVL-TKLEYLDLWGSQVSNRGA 205 (619)
Q Consensus 165 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~i~~~~~ 205 (619)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 56666666665554443332 222 555556655555554443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.9e-22 Score=199.07 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=139.5
Q ss_pred EeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHH----HHhhCCC-CCCEEeCCCCCCCChhhHhhhcCC-----
Q 007082 70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI----- 139 (619)
Q Consensus 70 L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l----- 139 (619)
+++++|. +.+..+..+...++|++|+|++|. +++... .++.+++ +|++|+|++| .+++..+..++.+
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 5778877 777788777777779999999987 766655 6677888 8999999999 6776666666653
Q ss_pred CCCcEEEccCCCCChhHHHH----hhcC-CCCCEEEcCCCCCChhHHHHhh----c-CCCCCEEEccCCccCchh----h
Q 007082 140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSLQ----V-LTKLEYLDLWGSQVSNRG----A 205 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~~~----~-l~~L~~L~l~~n~i~~~~----~ 205 (619)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 89999999999988766553 4445 8999999999998877665553 3 368999999999888543 3
Q ss_pred HhhcCCC-CCCEEecCCCCCCCCC---------CC-CCCcEEEcCCccccc-----cccccCC-CCCccEEeccCccccc
Q 007082 206 AVLKMFP-RLSFLNLAWTGVTKLP---------NI-SSLECLNLSNCTIDS-----ILEGNEN-KAPLAKISLAGTTFIN 268 (619)
Q Consensus 206 ~~~~~~~-~L~~L~l~~n~l~~l~---------~l-~~L~~L~l~~~~l~~-----l~~~~~~-~~~L~~L~l~~~~~~~ 268 (619)
..+...+ +|++|++++|.++... .+ ++|++|++++|.+.. ++..+.. .++|++|++++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4445554 7778877777776433 23 366777777666664 4444443 3356666666555554
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.7e-21 Score=189.90 Aligned_cols=193 Identities=20% Similarity=0.311 Sum_probs=140.4
Q ss_pred ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 356 (619)
.+++|+.|++++|.+..++.+..+++|++|++++|.+++..+ +..+ ++|++|++++|++++.. . +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--A-IAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--G-GTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCCCch--h-hcCCCCCCEE
Confidence 456677777777777666667777777777777777776554 4444 77888888887777653 2 3567788888
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++|.+++..+ +..+++
T Consensus 113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 174 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174 (308)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc--------------cccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence 888888777542 677888888888888776543 35677788888888888775433 777788
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 8888888888877654 6778888888888888877653 6677888888888887744
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.1e-21 Score=183.48 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=148.9
Q ss_pred cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc
Q 007082 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408 (619)
Q Consensus 329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~ 408 (619)
+.++.+++.++..+. . -.++|+.|++++|.+++..+..|..+++|++|+|++|++++..+. .|.
T Consensus 14 ~~v~c~~~~l~~iP~-~---l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-N---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AFQ 77 (220)
T ss_dssp TEEECTTSCCSSCCS-S---CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TTT
T ss_pred CEEEcCCCCcCcCCC-c---cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hhh
Confidence 567788887777532 2 246899999999999988887889999999999999999988887 899
Q ss_pred cCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 488 (619)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l 488 (619)
++++|++|+|++|.++...+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 99999999999999997777778999999999999999999999999999999999999999999988889999999999
Q ss_pred EcCCCccCCHHHHHHHHHhCCC
Q 007082 489 DLHGGWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 489 ~l~~n~~~~~~~~~~~~~~~~~ 510 (619)
++++|+|.|+|.+.|+.+|...
T Consensus 158 ~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 158 HLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp ECCSSCEECSGGGHHHHHHHHH
T ss_pred EeCCCCcCCCCccHHHHHHHHh
Confidence 9999999999999999887643
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=181.79 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=146.8
Q ss_pred CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHh
Q 007082 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (619)
Q Consensus 328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~ 406 (619)
-+.+++++|.++..+. . -.+.+++|++++|++++..+ ..|..+++|++|++++|++++..+. .
T Consensus 13 ~~~l~~s~n~l~~iP~-~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-H---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A 76 (220)
T ss_dssp TTEEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred CCEeEeCCCCcccCcc-C---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence 3578888888776532 2 24567899999999888743 4578899999999999999988777 7
Q ss_pred hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCc
Q 007082 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 486 (619)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 486 (619)
|.++++|++|+|++|++++..+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|++++..|..|..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 99999999999999999988888899999999999999999999899999999999999999999999899999999999
Q ss_pred EEEcCCCccCCHHHHHHHHHhCCC
Q 007082 487 LLDLHGGWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 487 ~l~l~~n~~~~~~~~~~~~~~~~~ 510 (619)
.|++++|+|.|+|.+.++.+|...
T Consensus 157 ~L~L~~N~l~c~c~l~~l~~~~~~ 180 (220)
T 2v70_A 157 TLNLLANPFNCNCYLAWLGEWLRK 180 (220)
T ss_dssp EEECCSCCEECSGGGHHHHHHHHH
T ss_pred EEEecCcCCcCCCchHHHHHHHHh
Confidence 999999999999999998887653
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=194.27 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=162.8
Q ss_pred CccEEeccCccccch--hHHHhhhccCCCcEEeccCCCcchh--hhh--hcCCCCCEEeCcCCCCChhHH----HHHHhc
Q 007082 255 PLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMVACV 324 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~--~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~ 324 (619)
.++.+.+.++.+... ........+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++..+ ..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 345555555554421 1122233456688888888887655 333 778889999999988876322 223333
Q ss_pred CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH----HHhhCCCCCcEEEccCCccCcchhccccchhh
Q 007082 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400 (619)
Q Consensus 325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 400 (619)
++|++|++++|++++..+..+ +.+++|++|++++|++.+... ..+..+++|++|++++|+++...+..
T Consensus 145 -~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------ 216 (310)
T 4glp_A 145 -PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC------ 216 (310)
T ss_dssp -SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH------
T ss_pred -cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH------
Confidence 899999999999988766555 678999999999999876421 12357889999999999986432210
Q ss_pred hhhHHhhccCCcCCEEEccCCCCCCCCcccccCC---CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082 401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 477 (619)
Q Consensus 401 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 477 (619)
...+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++.+ |..+. ++|++|+|++|++++. |
T Consensus 217 ---~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~- 288 (310)
T 4glp_A 217 ---AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-P- 288 (310)
T ss_dssp ---HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-C-
T ss_pred ---HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-c-
Confidence 0025788999999999999998877777766 6999999999999865 44443 7999999999999975 2
Q ss_pred cCCCCCCCcEEEcCCCccC
Q 007082 478 SFKPPRSLKLLDLHGGWLL 496 (619)
Q Consensus 478 ~~~~~~~L~~l~l~~n~~~ 496 (619)
.+..+++|+.|++++|++.
T Consensus 289 ~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTSCCCCSCEECSSTTTS
T ss_pred hhhhCCCccEEECcCCCCC
Confidence 2567799999999999985
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=5.9e-21 Score=186.52 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=131.4
Q ss_pred CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeC
Q 007082 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308 (619)
Q Consensus 229 ~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 308 (619)
.++++++++++++.++.+|..+. ++++.|++++|.+...++. .+..+++|+.|++++|.++.++....+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l-------- 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTL-------- 76 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCC--------
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCC--------
Confidence 34455555555555555554443 3555555555555443322 122334444444444433333222233
Q ss_pred cCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (619)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~ 388 (619)
++|+.|++++|+++... .. +..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 77 -----------------~~L~~L~Ls~N~l~~l~-~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 77 -----------------PVLGTLDLSHNQLQSLP-LL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -----------------TTCCEEECCSSCCSSCC-CC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -----------------CcCCEEECCCCcCCcCc-hh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 55555555555555432 11 245788888888888888777777888888888888888888
Q ss_pred cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082 389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468 (619)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 468 (619)
+..+. .|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++.+ |..+...++|+.++|++
T Consensus 138 ~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 138 TLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCS
T ss_pred ccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCC
Confidence 77666 678888888999998888876666778888899999999988864 44556677889999998
Q ss_pred CccC
Q 007082 469 AVLT 472 (619)
Q Consensus 469 n~l~ 472 (619)
|++.
T Consensus 205 Np~~ 208 (290)
T 1p9a_G 205 NPWL 208 (290)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 8875
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=188.27 Aligned_cols=226 Identities=16% Similarity=0.149 Sum_probs=179.0
Q ss_pred CCCCcEEEcCCccccc--cccc--cCCCCCccEEeccCccccchhHHHhh-hccCCCcEEeccCCCcchh------hhhh
Q 007082 230 ISSLECLNLSNCTIDS--ILEG--NENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF------CFLT 298 (619)
Q Consensus 230 l~~L~~L~l~~~~l~~--l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~------~~~~ 298 (619)
...++.+.+.++.+.. +... ....++|++|++++|.+.+..+...+ ..+++|++|++++|.++.. ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888888877652 2111 11457799999999999876554322 6789999999999999863 2345
Q ss_pred cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH---HHHHhcCCCCcEEEccCCCCChHHHH---Hhh
Q 007082 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYAIS---YMS 372 (619)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~ 372 (619)
.+++|++|++++|.+++..+..+..+ ++|++|++++|++.+... ....+.+++|++|++++|+++..... .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 79999999999999988777777666 999999999999876321 22235789999999999999854432 357
Q ss_pred CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccC---CcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL---NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (619)
.+++|++|++++|++++..|. .+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~------------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNP------------SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCS------------CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchh------------hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 899999999999999988665 45555 79999999999999 5676663 899999999999998
Q ss_pred hhHHhhcCCCCCCEEEcCCCccCc
Q 007082 450 VSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 450 ~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
.. .+..+++|+.|+|++|+++.
T Consensus 287 ~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 AP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC--CTTSCCCCSCEECSSTTTSC
T ss_pred Cc--hhhhCCCccEEECcCCCCCC
Confidence 63 36789999999999999975
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.3e-20 Score=184.17 Aligned_cols=152 Identities=26% Similarity=0.463 Sum_probs=99.4
Q ss_pred hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
+..+++|++|++++|.+++.. .+..+ ++|+.|++++|++++... ++.+++|++|++++|.+++..+ +..+++
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 152 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS--AIAGL-QSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTN 152 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG--GGTTC-TTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred HccCCCCCEEEccCCcCCCch--hhcCC-CCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCC
Confidence 344444555555555444321 23333 556666666665555432 2556777777777777766544 667777
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
|++|++++|++++.. .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +.
T Consensus 153 L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLT--------------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp CCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred ccEEEccCCcCCCCh--------------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 777777777776532 35677788888888888775433 6778888888888888887653 77
Q ss_pred CCCCCCEEEcCCCccCch
Q 007082 457 SLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~ 474 (619)
.+++|+.|++++|++++.
T Consensus 215 ~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCTTCCEEEEEEEEEECC
T ss_pred CCCCCCEEEccCCeeecC
Confidence 788888888888888764
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.2e-21 Score=196.19 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=155.5
Q ss_pred CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (619)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 383 (619)
+.++++++.++..+. . ..+.++.|++++|++++.....+...+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~-~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-S---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCS-S---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCc-c---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 467777777765332 1 226688899999988887665543268999999999999999888889999999999999
Q ss_pred CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh---cCCCC
Q 007082 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK 460 (619)
Q Consensus 384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~ 460 (619)
+|++++..+. .|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+..| ..+++
T Consensus 97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 9999887776 78999999999999999998888899999999999999999999877777 56999
Q ss_pred CCEEEcCCCccCchhhccCCCCCC--CcEEEcCCCccCCHHHHHHH
Q 007082 461 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF 504 (619)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~~~~~~ 504 (619)
|+.|+|++|+|++..+..+..++. ++.|++++|||.|+|.+.++
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 999999999999877777766766 48899999999999998875
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=2.3e-20 Score=178.66 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=150.4
Q ss_pred CCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEc
Q 007082 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (619)
Q Consensus 279 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 358 (619)
...+.++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEEC
Confidence 3455666666666655321 12578888888888887766666666 889999999998888766554 66899999999
Q ss_pred cCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (619)
Q Consensus 359 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (619)
++|.+++..+..|..+++|++|++++|++++..+. .|..+++|++|+|++|++++..+..|..+++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 99999988888888999999999999999887776 688999999999999999987777899999999
Q ss_pred EEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 439 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
+|+|++|++++..+..|..+++|+.|++++|+++..
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999998888899999999999999998764
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.5e-21 Score=181.16 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=140.1
Q ss_pred CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccC-CCCCCchHHHHHhcCCCCcE
Q 007082 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI 355 (619)
Q Consensus 280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~ 355 (619)
+++.|++++|.++.+ ..+..+++|++|++++|. ++...+..+..+ ++|++|++++ |+++...+..+ +.+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence 445555555555444 245566777777777775 665555455444 7777777777 77776654444 56788888
Q ss_pred EEccCCCCChHHHHHhhCCCCCc---EEEccCC-ccCcchhccccchhhhhhHHhhccCCcCC-EEEccCCCCCCCCccc
Q 007082 356 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFP 430 (619)
Q Consensus 356 L~l~~n~l~~~~~~~~~~~~~L~---~L~L~~n-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~ 430 (619)
|++++|.+++.+ . +..+++|+ +|++++| .+++..+. .|.++++|+ +|++++|+++...+..
T Consensus 110 L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp EEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred EeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCcccCHhh
Confidence 888888887743 2 67777777 8889888 88776665 688888999 9999999888444444
Q ss_pred ccCCCCCCEEecCCCC-CCchhHHhhcCC-CCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCc
Q 007082 431 LSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (619)
Q Consensus 431 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 494 (619)
|.. ++|+.|++++|+ ++++.+..|..+ ++|+.|++++|++++..+. .+++|+.|++++++
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 544 789999999994 888877888888 8999999999998865443 45788888888775
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.6e-20 Score=178.55 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=137.1
Q ss_pred CccEEeccCccccchhHHHhhhccCCCcEEeccCCC-cchh--hhhhcCCCCCEEeCcC-CCCChhHHHHHHhcCCCCcE
Q 007082 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN 330 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~ 330 (619)
++++|++++|.+..+++. .+..+++|++|++++|. ++.+ ..+..+++|++|++++ |.+++..+..+..+ ++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence 344444444444433331 22344555555555554 4444 2456677777777776 77776555555554 77888
Q ss_pred EEccCCCCCCchHHHHHhcCCCCc---EEEccCC-CCChHHHHHhhCCCCCc-EEEccCCccCcchhccccchhhhhhHH
Q 007082 331 LNLSNTRFSSAGVGILAGHLPNLE---ILSLSGT-QIDDYAISYMSMMPSLK-FIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 331 L~L~~n~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
|++++|++++... ++.+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++...+.
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------------ 174 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------------ 174 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------------
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------------
Confidence 8888887777432 35677787 9999999 88888777788899999 999999998854443
Q ss_pred hhccCCcCCEEEccCCC-CCCCCcccccCC-CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082 406 ALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 470 (619)
.|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|+++++++. .+++|+.|+++++.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 4555 789999999994 887777788888 9999999999999886544 57789999998764
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.4e-19 Score=168.70 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=143.5
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
...+.++.+++.++..+. +-.++|++|++++|.+++..+..|..+++|++|+|++|++....+.
T Consensus 19 Cs~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------ 82 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------ 82 (229)
T ss_dssp EETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred EeCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------
Confidence 346678888888777643 2358899999999999998888899999999999999999877666
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (619)
.|..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|..+..+++|+.|+|++|++++..+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 78999999999999999998877888999999999999999996 46678999999999999999998887888899999
Q ss_pred cEEEcCCCccCCHHH-HHHHHHhC
Q 007082 486 KLLDLHGGWLLTEDA-ILQFCKMH 508 (619)
Q Consensus 486 ~~l~l~~n~~~~~~~-~~~~~~~~ 508 (619)
+.|++++|+|.|+|. +.++..|.
T Consensus 162 ~~L~l~~N~~~c~c~~~~~l~~~~ 185 (229)
T 3e6j_A 162 THAYLFGNPWDCECRDIMYLRNWV 185 (229)
T ss_dssp CEEECTTSCBCTTBGGGHHHHHHH
T ss_pred CEEEeeCCCccCCcchhHHHHHHH
Confidence 999999999999995 55555443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.8e-19 Score=174.83 Aligned_cols=181 Identities=21% Similarity=0.324 Sum_probs=97.8
Q ss_pred cCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChH
Q 007082 287 SNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 366 (619)
Q Consensus 287 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 366 (619)
..+.+........+++|++|++++|.+.+.. .+..+ ++|+.|++++|++++..+ +..+++|++|++++|.+++.
T Consensus 32 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 32 KKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp TCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG
T ss_pred cCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC
Confidence 3333333333344455555555555554331 23333 555555555555555433 24456666666666665553
Q ss_pred HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082 367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (619)
Q Consensus 367 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (619)
. .+..+++|++|++++|++++. . .+..+++|++|++++|++++. ..+..+++|+.|++++|.
T Consensus 106 ~--~l~~l~~L~~L~L~~n~i~~~--~------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 106 S--SLKDLKKLKSLSLEHNGISDI--N------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp G--GGTTCTTCCEEECTTSCCCCC--G------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred h--hhccCCCCCEEECCCCcCCCC--h------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 2 255566666666666665543 1 355556666666666666543 445556666666666666
Q ss_pred CCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 447 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 447 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
+++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|++
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred cccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcc
Confidence 665543 555666666666666665532 255556666666666655
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.2e-18 Score=170.40 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=150.0
Q ss_pred ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 356 (619)
.+++|+.|++++|.+..++.+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+++... ++.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence 567888888888888888778889999999999999887665 5555 899999999999988533 3679999999
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
++++|.+++. ..+..+++|++|++++|++++. . .+..+++|++|++++|.+++..+ +..+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~------------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h------------hhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 9999999886 3578899999999999999876 3 68899999999999999997655 889999
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 476 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 476 (619)
|+.|++++|.++++. .+..+++|+.|++++|+++....
T Consensus 180 L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 180 LQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 999999999999864 48999999999999999986543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=3e-18 Score=158.93 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=131.8
Q ss_pred CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (619)
Q Consensus 328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~ 407 (619)
-+.++.+++.++.... +..++|++|++++|++++..+..+..+++|++|++++|++++..+. .|
T Consensus 9 ~~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~ 72 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VF 72 (208)
T ss_dssp TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred CCEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hc
Confidence 3566777777766532 2356899999999998887777788899999999999999877665 67
Q ss_pred ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcE
Q 007082 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 487 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 487 (619)
..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 88999999999999998777777888999999999999999888777888999999999999999887777888899999
Q ss_pred EEcCCCccCCHHH
Q 007082 488 LDLHGGWLLTEDA 500 (619)
Q Consensus 488 l~l~~n~~~~~~~ 500 (619)
|++++|++.|+|.
T Consensus 153 L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 153 IWLHDNPWDCTCP 165 (208)
T ss_dssp EECCSCCBCCCTT
T ss_pred EEecCCCeecCCC
Confidence 9999999988774
No 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.2e-18 Score=159.14 Aligned_cols=145 Identities=15% Similarity=0.199 Sum_probs=126.9
Q ss_pred cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 433 (619)
Q Consensus 354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 433 (619)
+.+++++|+++..+. .+ .++|++|++++|++++..+.. .|..+++|++|+|++|++++..|..|..
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCcc-----------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 678888888866542 22 348999999999998776541 4889999999999999999988999999
Q ss_pred CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCee
Q 007082 434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 512 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~ 512 (619)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|+|.|+|.+.++..|.....
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~ 155 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC
Confidence 9999999999999999988889999999999999999999999999999999999999999999999998887765443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.4e-18 Score=184.28 Aligned_cols=193 Identities=22% Similarity=0.279 Sum_probs=155.2
Q ss_pred CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEcc
Q 007082 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 334 (619)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 334 (619)
.+..+.+..+.+..... ...++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+ +..+ ++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECC
T ss_pred HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECc
Confidence 34555566666555433 34678899999999999888888899999999999999887665 5555 899999999
Q ss_pred CCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCC
Q 007082 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 414 (619)
Q Consensus 335 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 414 (619)
+|.+.+.. .+ ..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. . .+..+++|+
T Consensus 96 ~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~------------~l~~l~~L~ 156 (605)
T 1m9s_A 96 ENKIKDLS--SL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLD 156 (605)
T ss_dssp SSCCCCCT--TS-TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G------------GGGSCTTCS
T ss_pred CCCCCCCh--hh-ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h------------hhcccCCCC
Confidence 99988753 23 6688999999999998875 3478899999999999998875 2 578889999
Q ss_pred EEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082 415 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 476 (619)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 476 (619)
.|+|++|.+.+..| +..+++|+.|+|++|.++++ ..+..+++|+.|+|++|++++...
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 99999999987665 88889999999999999885 368889999999999998877543
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=157.51 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=124.3
Q ss_pred cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 433 (619)
Q Consensus 354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 433 (619)
+.+++++|.++..+.. -.++|++|++++|+++. +|. .|.++++|++|+|++|.+++..+..|..
T Consensus 13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~~-ip~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFTL-VPK------------ELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCCS-CCG------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCch-hHH------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 5788888888765422 24689999999999974 445 7899999999999999999888888999
Q ss_pred CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082 434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 510 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 510 (619)
+++|++|+|++|.++++.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+|.|+|.+.|+..|...
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 99999999999999999988999999999999999999988887898999999999999999999999999888653
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-18 Score=161.62 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=107.0
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 380 (619)
++|++|++++|.+++.....+..+ ++|++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 456666666666665444444444 666667766666665543333 456777777777777776665556677777777
Q ss_pred EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCC
Q 007082 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460 (619)
Q Consensus 381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 460 (619)
++++|++++..+. .|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++
T Consensus 106 ~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPG 166 (208)
T ss_dssp ECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTT
T ss_pred EcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCC
Confidence 7777777766555 56677777777777777776655556777777777777776554 3456
Q ss_pred CCEEEcCCCccCchhhccCCCCC
Q 007082 461 LTNLSIRDAVLTNSGLGSFKPPR 483 (619)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~ 483 (619)
|+.|+++.|+++|.+|..++.++
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHHhCCceeeccCcccc
Confidence 77777777777777776665443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=162.38 Aligned_cols=155 Identities=16% Similarity=0.219 Sum_probs=133.8
Q ss_pred CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (619)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 383 (619)
+.+++++|.++..+. . ....+++|++++|.+++..+...++.+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~-~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-H---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCcc-C---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 477777777765322 1 125678899999988887544444679999999999999999888889999999999999
Q ss_pred CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (619)
Q Consensus 384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 463 (619)
+|++++..+. .|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus 90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 9999988877 7999999999999999999988999999999999999999999998999999999999
Q ss_pred EEcCCCccCch
Q 007082 464 LSIRDAVLTNS 474 (619)
Q Consensus 464 L~L~~n~l~~~ 474 (619)
|+|++|++...
T Consensus 158 L~L~~N~l~c~ 168 (220)
T 2v70_A 158 LNLLANPFNCN 168 (220)
T ss_dssp EECCSCCEECS
T ss_pred EEecCcCCcCC
Confidence 99999998753
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1e-17 Score=179.38 Aligned_cols=172 Identities=24% Similarity=0.292 Sum_probs=112.8
Q ss_pred CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEE
Q 007082 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (619)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 331 (619)
.+++|+.|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.+.+.. .+..+ ++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l-~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDL-KKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTC-TTCCEE
T ss_pred cCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccC-CCCCEE
Confidence 45667777777777666542 4456777777777777766655677777777777777766532 33443 677777
Q ss_pred EccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCC
Q 007082 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 411 (619)
Q Consensus 332 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~ 411 (619)
+|++|.+.+.. .+ ..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..++
T Consensus 115 ~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--------------l~~l~ 175 (605)
T 1m9s_A 115 SLEHNGISDIN--GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--------------LAGLT 175 (605)
T ss_dssp ECTTSCCCCCG--GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--------------GTTCT
T ss_pred EecCCCCCCCc--cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--------------hccCC
Confidence 77777776642 22 4567777777777777665 346677777777777777765432 45667
Q ss_pred cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
+|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.
T Consensus 176 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 777777777777653 3466677777777777766554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2e-18 Score=182.75 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=76.7
Q ss_pred CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC
Q 007082 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311 (619)
Q Consensus 232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 311 (619)
+++.|++++|.+..+|..++ ++|+.|++++|.+..++ ..+++|+.|++++|.+++++.+.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 78888888888888877664 67888888888777655 134666666666666655533222 5566666665
Q ss_pred CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (619)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~ 388 (619)
.+++... .+++|+.|++++|.+++.+. .+++|++|++++|.+++.+. +. ++|++|+|++|+++
T Consensus 131 ~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 131 QLTMLPE-----LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred cCCCCCC-----cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence 5554222 12555555555555554321 24455555555555544222 22 45555555555544
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.1e-18 Score=173.68 Aligned_cols=243 Identities=15% Similarity=0.082 Sum_probs=149.3
Q ss_pred CEEecCCCCCCCCCC-C-CCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082 215 SFLNLAWTGVTKLPN-I-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (619)
Q Consensus 215 ~~L~l~~n~l~~l~~-l-~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 291 (619)
+.++.++++++++|. + +++++|++++|.++.+++..+ ++++|++|++++|.+.+..+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~------------------ 73 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------ 73 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT------------------
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh------------------
Confidence 345566666666653 2 457777777777777666433 5666666666666654433222
Q ss_pred chhhhhhcCCCCCE-EeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHHH
Q 007082 292 SRFCFLTQMKALEH-LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAIS 369 (619)
Q Consensus 292 ~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~ 369 (619)
.|.+++++++ +.+.+|.++...+..+..+ ++|+.|++++|+++......+ ....++..|++.+ +.+....+.
T Consensus 74 ----~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 74 ----VFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp ----SBCSCTTCCEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTT
T ss_pred ----HhhcchhhhhhhcccCCcccccCchhhhhc-cccccccccccccccCCchhh-cccchhhhhhhcccccccccccc
Confidence 3344444443 3334455555544444444 666666666666665433332 2345666777765 456665555
Q ss_pred HhhCC-CCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccC-CCCCCCCcccccCCCCCCEEecCCCCC
Q 007082 370 YMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASL 447 (619)
Q Consensus 370 ~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l 447 (619)
.|..+ ..++.|++++|+++...+. .| ...+|++|++++ |.++...+..|..+++|++|+|++|++
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred chhhcchhhhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 55554 3578888888888765444 33 446788888875 566655556788889999999999998
Q ss_pred CchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHH
Q 007082 448 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 499 (619)
Q Consensus 448 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 499 (619)
+.+++..| .+|+.|.+.++.--...| .+..+++|+.+++. +++.|.|
T Consensus 215 ~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 215 HSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp CCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS-CHHHHHH
T ss_pred CccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCC-CCccccc
Confidence 88765444 456666655543223334 46778899999986 5555633
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.4e-18 Score=174.94 Aligned_cols=234 Identities=15% Similarity=0.131 Sum_probs=129.3
Q ss_pred CEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcccc-ccccccC-CCCCccE-Eecc
Q 007082 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID-SILEGNE-NKAPLAK-ISLA 262 (619)
Q Consensus 191 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~-~l~~~~~-~~~~L~~-L~l~ 262 (619)
++++.++++++. +|..+ .+++++|+|++|+++.++ ++++|++|++++|.+. .++...+ +++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 678888888875 44444 368999999999998654 6899999999999975 4666555 7777765 5556
Q ss_pred CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccC-CCCCCc
Q 007082 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSA 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~ 341 (619)
+|.+..+++. .+..+++|++|++++|.+...+. ..+... .++..+++.+ +.+...
T Consensus 89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~~-~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 89 ANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPD----------------------VHKIHS-LQKVLLDIQDNINIHTI 144 (350)
T ss_dssp ETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCC----------------------CTTCCB-SSCEEEEEESCTTCCEE
T ss_pred CCcccccCch-hhhhccccccccccccccccCCc----------------------hhhccc-chhhhhhhccccccccc
Confidence 6777766543 24455666666666665554421 111111 2334444433 233333
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccC-CccCcchhccccchhhhhhHHhhccCCcCCEEEccC
Q 007082 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN-TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420 (619)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 420 (619)
....+.+....++.|++++|+++...+..| ...+|++|++++ |.++...+. .|.++++|++|++++
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~------------~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPND------------VFHGASGPVILDISR 211 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTT------------TTTTEECCSEEECTT
T ss_pred cccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHH------------HhccCcccchhhcCC
Confidence 222222222345555566655555443333 234555566554 333332222 455666666666666
Q ss_pred CCCCCCCcccccCCCCCCEEecCCC-CCCchhHHhhcCCCCCCEEEcCCC
Q 007082 421 TQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA 469 (619)
Q Consensus 421 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 469 (619)
|+++...+.. +.+|+.|.+.++ .++..+ .+..+++|+.+++.++
T Consensus 212 N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 212 TRIHSLPSYG---LENLKKLRARSTYNLKKLP--TLEKLVALMEASLTYP 256 (350)
T ss_dssp SCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred CCcCccChhh---hccchHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence 6665433322 333444443333 233322 3555666666666543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=8e-18 Score=157.15 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=129.6
Q ss_pred CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (619)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 383 (619)
+.++++++.++..+. . ..++++.|++++|.+++..+..+ ..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~-~---l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-N---LPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCS-S---CCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCC-c---cCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 456666666654322 1 12678888888888887755554 668999999999999999888889999999999999
Q ss_pred CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (619)
Q Consensus 384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 463 (619)
+|+++...+. .|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+..|..+++|+.
T Consensus 89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 9999877666 6889999999999999999988999999999999999999999998888999999999
Q ss_pred EEcCCCccCc
Q 007082 464 LSIRDAVLTN 473 (619)
Q Consensus 464 L~L~~n~l~~ 473 (619)
|+|++|++..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 9999998853
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.3e-17 Score=151.32 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=90.2
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
++|+.|++++|.+++.. .+ ..+++|++|++++|.++... .+..+++|++|++++|++++..+.
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~------------ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GI-EYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIP------------ 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TG-GGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSC------------
T ss_pred CCccEEeccCCCccChH--HH-hcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccCh------------
Confidence 55666666666665433 12 44666666666666555432 455666666666666666655444
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC-CCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (619)
.+..+++|++|++++|++++..+..+..+++|++|++++|. ++... .+..+++|+.|++++|++++.. .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence 46666666666666666665556666666666666666665 55532 4666666666666666666532 4555666
Q ss_pred CcEEEcCCCcc
Q 007082 485 LKLLDLHGGWL 495 (619)
Q Consensus 485 L~~l~l~~n~~ 495 (619)
|+.|++++|++
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 66666666664
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.8e-17 Score=149.21 Aligned_cols=154 Identities=22% Similarity=0.359 Sum_probs=131.6
Q ss_pred hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (619)
Q Consensus 298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 377 (619)
..+++|++|++++|.+++.. .+..+ ++|++|++++|.++... .+ ..+++|++|++++|.+++..+..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56789999999999998644 45555 99999999999887753 33 679999999999999998777889999999
Q ss_pred cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
++|++++|++++..+. .+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. .+.
T Consensus 115 ~~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~ 178 (197)
T 4ezg_A 115 TLLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIE 178 (197)
T ss_dssp CEEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGG
T ss_pred CEEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--Hhc
Confidence 9999999999987776 79999999999999998 66 444 6889999999999999999854 788
Q ss_pred CCCCCCEEEcCCCccCc
Q 007082 457 SLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~ 473 (619)
.+++|+.|++++|++.+
T Consensus 179 ~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEEECBC----
T ss_pred cCCCCCEEEeeCcccCC
Confidence 99999999999999864
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.2e-17 Score=166.54 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred CCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC-EEecCCCCCCchhH
Q 007082 374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSL 452 (619)
Q Consensus 374 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~ 452 (619)
+++|+.+++++|+++...+. +|.+|++|+.+++.+| ++.....+|.++++|+ .+++.+ .++.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred cCCCeEEECCCCCcceecHh------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 55555555555555444333 5555666666666555 4444455555666665 666655 5555555
Q ss_pred HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEE
Q 007082 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 489 (619)
Q Consensus 453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~ 489 (619)
..|.+|++|+.+++++|+++......|..+++|+.+.
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5666666666666666666665555666666666554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=8.4e-18 Score=169.92 Aligned_cols=175 Identities=22% Similarity=0.282 Sum_probs=129.7
Q ss_pred EEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHH-hcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCC
Q 007082 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361 (619)
Q Consensus 283 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 361 (619)
.++++++.++.++. .-.+.++.|++++|.+++.....+. .+ ++|+.|++++|++++..+..+ ..+++|++|++++|
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhc-cCCCCCCEEECCCC
Confidence 44555555544421 1124567777777777766555554 44 778888888888877655544 56888888888888
Q ss_pred CCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc---cCCCCCC
Q 007082 362 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL---STFKELI 438 (619)
Q Consensus 362 ~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~ 438 (619)
+++...+..|..+++|++|+|++|++++..+. .|.++++|+.|+|++|++++..+..| ..+++|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN------------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHH------------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 88887777788888899999999888877776 78888899999999998886555555 5688899
Q ss_pred EEecCCCCCCchhHHhhcCCCC--CCEEEcCCCccC
Q 007082 439 HLSLRNASLTDVSLHQLSSLSK--LTNLSIRDAVLT 472 (619)
Q Consensus 439 ~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 472 (619)
.|+|++|+++.+.+..+..++. ++.|+|++|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999988888788888877 488899998875
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.9e-17 Score=173.82 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=126.2
Q ss_pred CCCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082 213 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (619)
Q Consensus 213 ~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 290 (619)
+++.|++++|.+++++. .++|++|++++|.++.+| ..+++|+.|++++|.+.+++. + . .+|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l--~--~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L--P--ASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C--C--TTCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h--h--cCCCEEECCCCc
Confidence 77888888887777663 467888888888877777 346778888888887777655 2 1 278888888887
Q ss_pred cchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (619)
Q Consensus 291 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 370 (619)
+++++. .+++|+.|++++|.+++... .+++|+.|++++|++++.+. + . ++|+.|++++|.++..+.
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l-~--~~L~~L~Ls~N~L~~lp~-- 197 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--L-P--ESLEALDVSTNLLESLPA-- 197 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--C-C--TTCCEEECCSSCCSSCCC--
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--h-h--CCCCEEECcCCCCCchhh--
Confidence 777655 67778888888887776332 22678888888887777433 3 2 778888888887764321
Q ss_pred hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (619)
Q Consensus 371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (619)
+.. +| +...+.|+.|+|++|+++ .+|..+..+++|+.|+|++|.+++.
T Consensus 198 ~~~--~L-----------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 198 VPV--RN-----------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CC---------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred HHH--hh-----------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 211 11 112234566677776666 3455555677777777777777776
Q ss_pred hHHhhcCC
Q 007082 451 SLHQLSSL 458 (619)
Q Consensus 451 ~~~~~~~l 458 (619)
.|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 66666553
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.5e-17 Score=159.74 Aligned_cols=166 Identities=25% Similarity=0.328 Sum_probs=103.6
Q ss_pred CCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 007082 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (619)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 382 (619)
+..++++++.+++.. .+..+ ++|+.|++++|.++... .+ +.+++|++|++++|++++..+ +..+++|++|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 444445555554433 22233 56666666666665543 22 456677777777777666554 666777777777
Q ss_pred cCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (619)
Q Consensus 383 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 462 (619)
++|++++..+. .. ++|++|++++|++++. ..+..+++|+.|++++|++++.. .+..+++|+
T Consensus 93 ~~N~l~~l~~~--------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNGI--------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTTC--------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred CCCccCCcCcc--------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence 77776653321 22 6777777777777653 34667777777777777777653 566677777
Q ss_pred EEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082 463 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (619)
Q Consensus 463 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 497 (619)
.|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 777777777765 456666777777777777644
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-17 Score=160.82 Aligned_cols=172 Identities=17% Similarity=0.252 Sum_probs=138.1
Q ss_pred ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (619)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 356 (619)
.+.++..++++++.++.+..+..+++|++|++++|.++... .+..+ ++|+.|++++|++++..+ ++.+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEE
Confidence 34556666777777777666777888888888888877643 44555 888899998888888755 3678999999
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (619)
Q Consensus 357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (619)
++++|++++..+ +.. ++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 151 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-D-------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSK 151 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-G-------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTT
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC-h-------------hhcCcccccEEECCCCcCCCC--hHHccCCC
Confidence 999999887543 333 8999999999998874 2 578899999999999999864 36888999
Q ss_pred CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh
Q 007082 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 475 (619)
Q Consensus 437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 475 (619)
|+.|++++|.+++. ..+..+++|+.|++++|++++..
T Consensus 152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999999999987 57888999999999999988663
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4e-17 Score=153.48 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=129.3
Q ss_pred CCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 007082 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (619)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 382 (619)
.+.++.+++.++..... ..++|+.|++++|.+++..+..+ +.+++|++|++++|+++...+..|..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~~----~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG----IPTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSC----CCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCC----CCCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45666666666543321 12788888888888888766555 66899999999999998887777889999999999
Q ss_pred cCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (619)
Q Consensus 383 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 462 (619)
++|++++..+. .|..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++++.+..|..+++|+
T Consensus 96 s~N~l~~l~~~------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSA------------VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTT------------TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcCCccChh------------HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 99999987776 7889999999999999998 6788889999999999999999998888899999999
Q ss_pred EEEcCCCccCch
Q 007082 463 NLSIRDAVLTNS 474 (619)
Q Consensus 463 ~L~L~~n~l~~~ 474 (619)
.|++++|++...
T Consensus 163 ~L~l~~N~~~c~ 174 (229)
T 3e6j_A 163 HAYLFGNPWDCE 174 (229)
T ss_dssp EEECTTSCBCTT
T ss_pred EEEeeCCCccCC
Confidence 999999998754
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-16 Score=143.46 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=120.8
Q ss_pred CcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc
Q 007082 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (619)
Q Consensus 353 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (619)
.+.+++++++++..+. ...++|++|++++|++++..+. .|..+++|++|++++|.+++..+..|.
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence 5678888888776542 2347899999999998877666 678899999999999999977777788
Q ss_pred CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCC
Q 007082 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP 509 (619)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~ 509 (619)
.+++|++|++++|.+++.++..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|. +.++..|..
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~ 151 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 151 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence 99999999999999999888888999999999999999998877778889999999999999999996 666666654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=6e-17 Score=161.52 Aligned_cols=280 Identities=16% Similarity=0.163 Sum_probs=206.9
Q ss_pred CCCCCEEEcCCCCCChhHHHHhhc-CCCCCEEEccCCccC--chhhHhhcCCCCCCEEecCCCCCCC--CCC--------
Q 007082 163 LQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVS--NRGAAVLKMFPRLSFLNLAWTGVTK--LPN-------- 229 (619)
Q Consensus 163 l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~--l~~-------- 229 (619)
++++++|.++++ +.......+.. +++|++|+|++|++. ......+ +.+..+.+..+.+.. +.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccCHHHhcccccccccc
Confidence 457888998875 44444455655 899999999999987 2222222 224555555555542 446
Q ss_pred CCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc----chh--hhhhcCCC
Q 007082 230 ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL----SRF--CFLTQMKA 302 (619)
Q Consensus 230 l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~--~~~~~~~~ 302 (619)
+++|+++++.+ .++.+++..| ++++|+++++.+|.+..++.. +|..+.++..+....+.. ..+ ..|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999999 8888988777 899999999999988876654 456677777777665322 111 34556777
Q ss_pred CC-EEeCcCCCCChhHHHHHHhc---CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCc
Q 007082 303 LE-HLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (619)
Q Consensus 303 L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 378 (619)
|+ .+.+....- .+..+... ..+++.+.+.++ +.......+...|++|+.+++++|+++.....+|.++.+|+
T Consensus 178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCCc---HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 77 555554321 22222211 157778888765 44444555555699999999999999999889999999999
Q ss_pred EEEccCCccCcchhccccchhhhhhHHhhccCCcCC-EEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 379 ~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
.+++.+| +....+. +|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++.+....|.+
T Consensus 254 ~l~l~~n-i~~I~~~------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQR------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp EEECCTT-CCEECTT------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred EEECCcc-cceehHH------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 9999998 6655555 899999999 999999 777777899999999999999999999999999999
Q ss_pred CCCCCEEEc
Q 007082 458 LSKLTNLSI 466 (619)
Q Consensus 458 l~~L~~L~L 466 (619)
+++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999864
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=8e-18 Score=179.17 Aligned_cols=208 Identities=14% Similarity=0.144 Sum_probs=132.1
Q ss_pred CCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc-chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCc
Q 007082 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 329 (619)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 329 (619)
..+++|+.|++++|.+..+|..+ ..+++|+.|++++|.. ...+.. + ..+...+..+..+..+ ++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i--~~l~~L~~L~l~~n~~l~~l~~l-----l-----~~~~~~~~~~~~l~~l-~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL--ESCKELQELEPENKWCLLTIILL-----M-----RALDPLLYEKETLQYF-STLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH--HHHHHHHHHCTTCHHHHHHHHHH-----H-----HHHCTGGGHHHHHHHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHH--HHHHHHHHhccccchhhhhHHHH-----H-----HhcccccCCHHHHHHH-Hhcc
Confidence 35666667777777666665543 3555666666644321 000000 0 0011334445555554 6666
Q ss_pred EEE-ccCCCCCCch--------HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhh
Q 007082 330 NLN-LSNTRFSSAG--------VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400 (619)
Q Consensus 330 ~L~-L~~n~l~~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 400 (619)
.|+ ++.|.+.+.. ...+ ....|+.|++++|.+++.+ . ++.+++|+.|++++|.++ .+|.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~------- 480 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPP------- 480 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCG-------
T ss_pred cCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-ccch-------
Confidence 666 4444332211 1111 1235888888888888753 3 778888888888888887 4565
Q ss_pred hhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCchhhcc-
Q 007082 401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGS- 478 (619)
Q Consensus 401 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~- 478 (619)
.+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++..+..
T Consensus 481 -----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 481 -----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 67888888888888888886 45 7888888888888888888876 778888888888888888888764422
Q ss_pred --CCCCCCCcEEEc
Q 007082 479 --FKPPRSLKLLDL 490 (619)
Q Consensus 479 --~~~~~~L~~l~l 490 (619)
+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 122577777764
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3e-18 Score=182.49 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=153.0
Q ss_pred CCCCCCcEEEcCCccccccccccCCCCCccEEeccCcccc-chhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCE
Q 007082 228 PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEH 305 (619)
Q Consensus 228 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~ 305 (619)
..+++|+.|++++|.+..+|+.+..+++|++|++++|... ..+.... .+ +..... ..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~--------~~----~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR--------AL----DPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HH----CTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH--------hc----ccccCCHHHHHHHHhccc
Confidence 3578899999999999999999999999999999776421 1111000 00 000111 33445555555
Q ss_pred Ee-CcCCCCChh--------HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082 306 LD-LSSSMIGDD--------SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (619)
Q Consensus 306 L~-l~~n~l~~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (619)
|+ ++.|.+... ....+.. ..|+.|++++|.+++.+ . + +.+++|+.|++++|.++. .|..++.+++
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp-~-~-~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~ 487 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLC-H-L-EQLLLVTHLDLSHNRLRA-LPPALAALRC 487 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCC-C-G-GGGTTCCEEECCSSCCCC-CCGGGGGCTT
T ss_pred CcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCCCc-C-c-cccccCcEeecCcccccc-cchhhhcCCC
Confidence 55 343332221 1122222 57999999999999864 3 3 779999999999999995 4668899999
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC-cccccCCCCCCEEecCCCCCCchhH---
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL--- 452 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--- 452 (619)
|++|+|++|++++. | .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|.+++.++
T Consensus 488 L~~L~Ls~N~l~~l-p-------------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 488 LEVLQASDNALENV-D-------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCEEECCSSCCCCC-G-------------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CCEEECCCCCCCCC-c-------------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 99999999999874 3 4889999999999999999887 9999999999999999999988754
Q ss_pred HhhcCCCCCCEEEc
Q 007082 453 HQLSSLSKLTNLSI 466 (619)
Q Consensus 453 ~~~~~l~~L~~L~L 466 (619)
..+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 23455899999875
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=6.2e-16 Score=134.87 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=88.1
Q ss_pred CCCCcEEEccCCCCC-hHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082 350 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428 (619)
Q Consensus 350 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 428 (619)
.++|+.|++++|.++ +..+..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------NLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------TCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------hhhcCCCCCEEECCCCcccchHH
Confidence 456777777777766 34444556677777777777777655 2 56677777777777777776666
Q ss_pred ccccCCCCCCEEecCCCCCCch-hHHhhcCCCCCCEEEcCCCccCchhh---ccCCCCCCCcEEEcCC
Q 007082 429 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHG 492 (619)
Q Consensus 429 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~ 492 (619)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666677777777777777774 33667777777777777777776544 3556667777777653
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=6.8e-16 Score=137.63 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCcEEEccCCCCC-hHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcc
Q 007082 351 PNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429 (619)
Q Consensus 351 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 429 (619)
++|+.|++++|.++ +..+..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++..|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------NLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------SCCCCSSCCEEEEESCCCCSCCCH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------hhccCCCCCEEECcCCcCchHHHH
Confidence 44555555555544 22233344455555555555555443 2 344555555555555555544444
Q ss_pred cccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhh---ccCCCCCCCcEEEcCCCcc
Q 007082 430 PLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~ 495 (619)
.+..+++|++|++++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 44445555555555555555321 445555555555555555554433 2444455555555555543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=2.9e-15 Score=136.50 Aligned_cols=130 Identities=13% Similarity=0.241 Sum_probs=89.9
Q ss_pred cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH-HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (619)
Q Consensus 329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~ 407 (619)
+.++++++.++..+. .+ .++|++|++++|.+++..+. .+..+++|++|++++|++++..|. .|
T Consensus 11 ~~l~~s~~~l~~ip~-~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------AF 74 (192)
T ss_dssp TEEECTTSCCSSCCS-CC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------TT
T ss_pred CEEEcCCCCcCcCcc-CC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------Hc
Confidence 566666666655422 11 33677777777777665543 366777777777777777776666 67
Q ss_pred ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777777777777777766666677777777777777777777777777777777777777777653
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=4.9e-15 Score=131.98 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=101.5
Q ss_pred CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
.+.+++++|.++..... + .++|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|.
T Consensus 11 ~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 46788888888764332 2 37899999999999988888999999999999999999998888899
Q ss_pred CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (619)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~ 508 (619)
.+++|++|+|++|++++..+..|..+++|+.|++++|+|.|+|. +.++..|.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l 128 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence 99999999999999999888889999999999999999999994 77666655
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.3e-14 Score=147.69 Aligned_cols=261 Identities=9% Similarity=0.093 Sum_probs=148.8
Q ss_pred cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC-----CCCCCCCCcEE
Q 007082 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECL 236 (619)
Q Consensus 162 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~l~~L~~L 236 (619)
.+..++.+.+.. .+..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+. .+.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345566666653 3444444556554 5666666544 555555566553 466666554 222 23345566666
Q ss_pred EcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChh
Q 007082 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 316 (619)
Q Consensus 237 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 316 (619)
++.+|.+..++...+.+.+|+.+.+..+ +..+.. ..|..+++|+.+.+..+ ++..
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-----------------------~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGS-----------------------QAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECT-----------------------TTTTTCTTCCCEECCTT-CCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehh-----------------------hHhhCCCCCCEEecCCC-ccCc
Confidence 6666666666665555555555555432 222211 34455555665555442 2222
Q ss_pred HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC-----cch
Q 007082 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK-----GFI 391 (619)
Q Consensus 317 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~ 391 (619)
...+|.. . +|+.+.+ .+.++.....+|.++++|+.+++.+|.+. ...
T Consensus 241 ~~~aF~~--~-------------------------~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 241 GQEAFRE--S-------------------------GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp CTTTTTT--C-------------------------CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred ccccccc--C-------------------------CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence 2222222 3 3444444 22233333444555555666655555443 122
Q ss_pred hccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (619)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 471 (619)
+. .|.+|++|+.+++.+ .++.....+|.+|.+|+.+.|.++ ++.+....|.++ +|+.+++++|.+
T Consensus 293 ~~------------aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 293 PY------------CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TT------------TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred HH------------HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 22 677888888888874 466566677888888888888554 677777778888 888888888887
Q ss_pred CchhhccCCCC-CCCcEEEcCCCcc
Q 007082 472 TNSGLGSFKPP-RSLKLLDLHGGWL 495 (619)
Q Consensus 472 ~~~~~~~~~~~-~~L~~l~l~~n~~ 495 (619)
.......|..+ ..+..|.+..+..
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cccccccccCCCCCccEEEeCHHHH
Confidence 77666677776 3677888877653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.9e-15 Score=134.73 Aligned_cols=134 Identities=28% Similarity=0.355 Sum_probs=103.2
Q ss_pred CCCcEEEccCCCCC-CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082 326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (619)
Q Consensus 326 ~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~ 404 (619)
++|+.|++++|.++ +..+.. +..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM----------- 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence 56777777777776 222322 35578888888888888776 5677888888888888888876666
Q ss_pred HhhccCCcCCEEEccCCCCCCCC-cccccCCCCCCEEecCCCCCCchhH---HhhcCCCCCCEEEcCCCccCch
Q 007082 405 TALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
.+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+...
T Consensus 90 -~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 90 -LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp -HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred -HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 6677888999999998888643 2678888899999999998888765 5788889999999999887654
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.1e-14 Score=130.92 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=112.4
Q ss_pred CCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHh
Q 007082 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (619)
Q Consensus 327 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~ 406 (619)
..+.+++++++++.... +..++|++|++++|++++..+..+..+++|++|++++|++++..+. .
T Consensus 8 ~~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~ 71 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------V 71 (177)
T ss_dssp ETTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------T
T ss_pred CCCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------H
Confidence 45678888888877642 2357899999999998887777788899999999999999877666 6
Q ss_pred hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 476 (619)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 476 (619)
|..+++|++|++++|++++..+..+..+++|++|++++|.++++++..+..+++|++|++++|++++..+
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8889999999999999998777778889999999999999998887778889999999999999887543
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=8e-15 Score=149.99 Aligned_cols=332 Identities=14% Similarity=0.165 Sum_probs=163.6
Q ss_pred hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (619)
Q Consensus 105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 184 (619)
..+..+|.+|.+|+.+.+.. .++.....+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +..+...+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 33444566777777777764 345555566667777777777543 44444556666666666655433 333334455
Q ss_pred hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccC
Q 007082 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAG 263 (619)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~ 263 (619)
.++..++..... .+......+|.++++|+.+.+..+. ..+....+ ++.+|+.+.+..
T Consensus 137 ~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~--------------------~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 137 KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM--------------------ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC--------------------CEECTTTTTTCTTCCBCCCCT
T ss_pred ecccccccccCc--cccccchhhhcccCCCcEEecCCcc--------------------ceeccccccCCCCceEEEcCC
Confidence 555433222221 1222333455555555555554331 22222222 344444444433
Q ss_pred ccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH
Q 007082 264 TTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 343 (619)
+ +..+. ...+..+..|+.+.+..+............+|+.+.+... ++......+... ..++.+.+..+.. ....
T Consensus 195 ~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~-~i~~ 269 (394)
T 4fs7_A 195 N-LKIIR-DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKL-RIGG 269 (394)
T ss_dssp T-CCEEC-TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTC-EECS
T ss_pred C-ceEeC-chhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcc-eeec
Confidence 2 11111 1223344444444443332221122223344555544332 111111222222 5555555554321 1111
Q ss_pred HHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCC
Q 007082 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 423 (619)
Q Consensus 344 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 423 (619)
..+ ..++.++.+....+.+.. ..|..+.+|+.+.+.++ +...-.. +|.+|.+|+.+++.++ +
T Consensus 270 ~~F-~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 270 SLF-YNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp CTT-TTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTT------------TTTTCTTCCEECCCTT-C
T ss_pred ccc-ccccccceeccCceeecc---ccccccccccccccccc-cceechh------------hhcCCCCCCEEEeCCc-c
Confidence 112 346666666655543322 34556677777766543 3322223 5777777777777543 5
Q ss_pred CCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082 424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 488 (619)
Q Consensus 424 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l 488 (619)
+.....+|.+|.+|+.+++..+ ++.+....|.+|++|+.+++..+ ++. ....|..+++|+.+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 4455566777777777777655 66666667777777777777654 221 12356666666554
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=7.6e-15 Score=147.85 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=111.3
Q ss_pred CCCCEEeCcCCCCChhHHHHHHhc----CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh----
Q 007082 301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---- 372 (619)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---- 372 (619)
++|+.|++++|.+++.....+... +++|++|+|++|.+++.....+...+++|++|++++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666666555444433 146667777777666655555555556677777777777665544442
Q ss_pred -CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC----cccccCCCCCCEEecCCCCC
Q 007082 373 -MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASL 447 (619)
Q Consensus 373 -~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l 447 (619)
..++|++|+|++|.++..... .-...+..+++|++|+|++|.+++.. ...+...++|++|+|++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHH--------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 356677777777776542111 00013466777777777777776432 34455667788888888888
Q ss_pred CchhH----HhhcCCCCCCEEEcCCCccCchhhccCCCC---C--CCcEEE--cCCCcc
Q 007082 448 TDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL 495 (619)
Q Consensus 448 ~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~l~--l~~n~~ 495 (619)
++... ..+...++|++|+|++|.|++.....+... . .++.+. +.+|.+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 76533 334456888888888888887655444322 2 266666 666665
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=3.2e-15 Score=130.30 Aligned_cols=128 Identities=25% Similarity=0.374 Sum_probs=95.8
Q ss_pred CCCcEEEccCCCCC-CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082 326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (619)
Q Consensus 326 ~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~ 404 (619)
++|+.|++++|.++ +..+. .++.+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~----------- 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV----------- 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-----------
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-----------
Confidence 56777777777776 22233 235678888888888888776 5577788888888888888876666
Q ss_pred HhhccCCcCCEEEccCCCCCCC-CcccccCCCCCCEEecCCCCCCchhH---HhhcCCCCCCEEEcCC
Q 007082 405 TALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRD 468 (619)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 468 (619)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 83 -~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 -LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 667788888888888888763 34677888888888888888887665 5778888888888763
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=130.76 Aligned_cols=128 Identities=23% Similarity=0.222 Sum_probs=109.3
Q ss_pred cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc
Q 007082 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408 (619)
Q Consensus 329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~ 408 (619)
+.++++++.++..+. . -.++|++|++++|.++..+ ..|..+++|++|++++|++++..+. .|.
T Consensus 13 ~~l~~~~~~l~~ip~-~---~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~------------~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-G---IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQ------------SFS 75 (193)
T ss_dssp TEEECTTSCCSSCCS-C---CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTT------------TTT
T ss_pred CEEEcCCCCCCcCCC-C---CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHh------------Hcc
Confidence 567788887776532 1 2468999999999988654 6788899999999999999888777 789
Q ss_pred cCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 473 (619)
++++|++|+|++|.+++..+..|..+++|+.|+|++|.++.+.+..|..+++|+.|++++|++..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999999999998888889999999999999999999888889999999999999998863
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2e-14 Score=147.02 Aligned_cols=325 Identities=12% Similarity=0.126 Sum_probs=207.8
Q ss_pred HHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhc
Q 007082 83 MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSS 162 (619)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 162 (619)
..+|.+|.+|+.+.|... ++.....+|.+|++|+.+++..+ ++.....+|.+++.|+.+.+..+ +......+|.+
T Consensus 64 ~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 346889999999999853 66766778999999999999865 56666778889999999877654 55555567777
Q ss_pred CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC-----CCCCCCCCcEEE
Q 007082 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLN 237 (619)
Q Consensus 163 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~l~~L~~L~ 237 (619)
+..++....... ..+...+|.+|++|+.+.+..+ +......+|.++.+|+.+.+..+ +. .+.++..|+.+.
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 765444433332 3334467999999999999765 44566678999999998888765 22 233556666666
Q ss_pred cCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH
Q 007082 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317 (619)
Q Consensus 238 l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 317 (619)
+..+. ..+....+...+|+.+.+.... ..+. . ..+..+..++.+.+..+.. ...
T Consensus 215 ~~~~~-~~i~~~~~~~~~l~~i~ip~~~-~~i~-~----------------------~~f~~~~~l~~~~~~~~~~-~i~ 268 (394)
T 4fs7_A 215 FPNSL-YYLGDFALSKTGVKNIIIPDSF-TELG-K----------------------SVFYGCTDLESISIQNNKL-RIG 268 (394)
T ss_dssp CCTTC-CEECTTTTTTCCCCEEEECTTC-CEEC-S----------------------STTTTCSSCCEEEECCTTC-EEC
T ss_pred cCCCc-eEeehhhcccCCCceEEECCCc-eecc-c----------------------ccccccccceeEEcCCCcc-eee
Confidence 55432 2233333444555555554321 1111 1 2344445555555544321 111
Q ss_pred HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccc
Q 007082 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397 (619)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 397 (619)
...+... ..++.+......+.+. .+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++..-..
T Consensus 269 ~~~F~~~-~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~---- 337 (394)
T 4fs7_A 269 GSLFYNC-SGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR---- 337 (394)
T ss_dssp SCTTTTC-TTCCEEEECSSEECTT----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT----
T ss_pred ccccccc-cccceeccCceeeccc----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH----
Confidence 1222222 5566655554433221 2245778888887654 55555667888888888888643 4433333
Q ss_pred hhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEE
Q 007082 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (619)
Q Consensus 398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 464 (619)
+|.+|.+|+.+++..+ ++.....+|.+|.+|+.+++..+ ++. ....|.++++|+.+
T Consensus 338 --------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 --------SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp --------TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred --------hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 7888888998888776 66566778888889999988765 222 23467888887764
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=7.3e-14 Score=142.08 Aligned_cols=193 Identities=13% Similarity=0.170 Sum_probs=148.0
Q ss_pred CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (619)
Q Consensus 280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 357 (619)
+|+.+.+.. .++.+ ..|..|++|+.+++..|.++......|. +.+|+.+.+.++ ++......| ..|++|+.++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTT-CCEECTTTT-TTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCCc-hheehhhHh-hCCCCCCEEe
Confidence 355555543 33333 4567777777777777777666555555 278888888744 666555555 6689999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCC-----CCCccccc
Q 007082 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLS 432 (619)
Q Consensus 358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~ 432 (619)
+.++ ++.....+|.+ .+|+.+.+. +.++..... +|.+|++|+.+++.+|.+. .....+|.
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~------------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR------------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT------------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred cCCC-ccCcccccccc-CCccEEEeC-CCccEEChh------------HhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 9875 66666677877 799999994 556555455 8999999999999998765 35567899
Q ss_pred CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 495 (619)
+|++|+.++|. +.++.+....|.+|++|+.++|..| ++......|..+ +|+.+++.+|..
T Consensus 298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 99999999999 4588888889999999999999655 777888899999 999999999865
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3e-14 Score=127.28 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=99.0
Q ss_pred cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (619)
Q Consensus 378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 457 (619)
+.+++++|.++.. |. .+ .++|++|+|++|++++..|..|..+++|++|+|++|+++++++..|..
T Consensus 15 ~~l~~~~n~l~~i-P~------------~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PA------------GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSC-CS------------CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCcc-CC------------Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 6788888888654 33 22 278999999999999888889999999999999999999988878899
Q ss_pred CCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (619)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~ 508 (619)
+++|+.|+|++|++++..+..|..+++|+.|++++|+|.|+|. +.++..|.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~ 131 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHH
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHH
Confidence 9999999999999998877778899999999999999999995 66655554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.7e-14 Score=129.52 Aligned_cols=132 Identities=22% Similarity=0.224 Sum_probs=87.2
Q ss_pred cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428 (619)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 428 (619)
.+++|+.|++++|+++.. +......++|++|++++|.+++. . .+..+++|++|++++|.+++..+
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~------------~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--D------------GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--C------------CCCCCSSCCEEECCSSCCCEECS
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--c------------ccccCCCCCEEECCCCcccccCc
Confidence 356677777777776654 22222334777777777777654 2 46777777777777777775544
Q ss_pred ccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhhc---cCCCCCCCcEEEcCCCcc
Q 007082 429 FPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 429 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l~l~~n~~ 495 (619)
..+..+++|++|++++|.++.... ..+..+++|+.|++++|+++..... .+..+++|+.||+++|..
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 445677777777777777766432 3667777788888888877654222 355677788888877764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=3.5e-14 Score=127.43 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=90.2
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
++|+.|++++|.++... .+....++|++|++++|.+++. ..+..+++|++|++++|++++..+.
T Consensus 19 ~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------ 82 (176)
T ss_dssp TSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------
T ss_pred CCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------
Confidence 45666666666655431 1223344777777777777765 4566777888888888887766544
Q ss_pred hhccCCcCCEEEccCCCCCCCCcc--cccCCCCCCEEecCCCCCCchhHH---hhcCCCCCCEEEcCCCccCc
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRNASLTDVSLH---QLSSLSKLTNLSIRDAVLTN 473 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~ 473 (619)
.+..+++|++|++++|.++. +|. .+..+++|+.|++++|.++..... .+..+++|+.|++++|.+..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 56778888888888888763 444 677788888888888887765432 47778888888888887654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=3.7e-13 Score=135.51 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=116.6
Q ss_pred HHHhcCCccEEeccCCCCCChHHHHHHhcC-----CCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhH
Q 007082 60 LEVFKHNAEAIELRGENSVDAEWMAYLGAF-----RYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGM 133 (619)
Q Consensus 60 ~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~ 133 (619)
.....++++.|+|++|. ++......+..+ ++|++|+|++|. +++.....+. .+++|++|+|++| .+++...
T Consensus 67 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~ 143 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEAC 143 (372)
T ss_dssp HHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHH
T ss_pred HHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHH
Confidence 33445679999999988 665544444433 689999999987 7777666655 4678899999998 7777766
Q ss_pred hhhc-----CCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChhH----HHHhhcCCCCCEEEccCCcc
Q 007082 134 KHLL-----SISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQV 200 (619)
Q Consensus 134 ~~l~-----~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~i 200 (619)
..++ ..++|++|+|++|.+++.... .+..+++|++|+|++|.+.+.. ...+..+++|++|++++|.+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 6653 467899999999988775443 4467888999999998887654 44556778888888888888
Q ss_pred CchhhH----hhcCCCCCCEEecCCCCCC
Q 007082 201 SNRGAA----VLKMFPRLSFLNLAWTGVT 225 (619)
Q Consensus 201 ~~~~~~----~~~~~~~L~~L~l~~n~l~ 225 (619)
++.... .+...++|++|+|++|.++
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 764433 3444566666666666554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2e-14 Score=157.96 Aligned_cols=214 Identities=12% Similarity=0.077 Sum_probs=84.3
Q ss_pred CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh---------hHHHHhhcCCCCCEEEccCCccCchhhHhhcC
Q 007082 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD---------LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM 210 (619)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 210 (619)
++++.|+|.++.+...... .|+.++|+.+.+.+ ..+..+..++.|+.|+|++|.+.. ++..+..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred CccceEEeeCCCCCcchhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence 4566777776666553221 12333333332222 223444555555555555555542 2222224
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082 211 FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (619)
Q Consensus 211 ~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 290 (619)
+ ++|++|+|++|.++.+|..+..+++|+.|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 246 l-------------------~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 246 Y-------------------DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQLKYFYFFDNM 304 (727)
T ss_dssp C-------------------CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--GGGGTTCSEEECCSSC
T ss_pred C-------------------CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--hcCCCCCCEEECCCCC
Confidence 4 455555555555555555555566666666666666555432 3356666666666666
Q ss_pred cchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCC--------
Q 007082 291 LSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-------- 361 (619)
Q Consensus 291 l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-------- 361 (619)
++.+ ..+..+++|++|+|++|.+++..+..+......+..+++++|.+++.. ...|+.|+++.|
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-------p~~l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-------PHERRFIEINTDGEPQREYD 377 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCC-----------------
T ss_pred CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-------ccccceeEeecccccccccC
Confidence 6655 347778888899999988888777776543222334677888877643 345777777766
Q ss_pred CCChHHHHHhhCCCCCcEEEccCCccC
Q 007082 362 QIDDYAISYMSMMPSLKFIDISNTDIK 388 (619)
Q Consensus 362 ~l~~~~~~~~~~~~~L~~L~L~~n~~~ 388 (619)
.+.+..+..+..+..++...+++|-+.
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------CCC
T ss_pred Cccccccchhhcccccceeeeeccccc
Confidence 233333333445556666677777664
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=4.1e-14 Score=155.46 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=87.6
Q ss_pred HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccc
Q 007082 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397 (619)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 397 (619)
+..+..+ +.|+.|+|++|.+...... + ..+++|++|+|++|.++ ..|..|..+++|++|+|++|.++ .+|.
T Consensus 217 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~---- 287 (727)
T 4b8c_D 217 KDSKYDD-QLWHALDLSNLQIFNISAN-I-FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA---- 287 (727)
T ss_dssp -----CC-CCCCEEECTTSCCSCCCGG-G-GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS----
T ss_pred hhhhccC-CCCcEEECCCCCCCCCChh-h-cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh----
Confidence 4444444 7788888888887765333 3 25788888888888887 34566778888888888888887 4466
Q ss_pred hhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (619)
Q Consensus 398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 456 (619)
.|..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+.
T Consensus 288 --------~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 288 --------ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp --------SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred --------hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 6778888888888888886 5677788888888888888888887776653
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.7e-15 Score=139.02 Aligned_cols=129 Identities=25% Similarity=0.276 Sum_probs=84.2
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (619)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (619)
+.+++|++|++++|.+++.. .+..+++|++|++++|.++. +|. .+..+++|++|++++|++++ +
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~-l~~------------~~~~~~~L~~L~L~~N~l~~-l 108 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK-IEN------------LDAVADTLEELWISYNQIAS-L 108 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS-CSS------------HHHHHHHCSEEEEEEEECCC-H
T ss_pred hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc-ccc------------hhhcCCcCCEEECcCCcCCc-C
Confidence 45677777777777766633 56667777777777777763 333 45556677777777777765 2
Q ss_pred cccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhhcc----------CCCCCCCcEEEcCCCcc
Q 007082 428 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGS----------FKPPRSLKLLDLHGGWL 495 (619)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~L~~l~l~~n~~ 495 (619)
| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|.. +..+++|+.|| +|++
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 3 56667777777777777776543 46667777777777777776654432 45566777665 5554
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=3.5e-12 Score=130.28 Aligned_cols=327 Identities=11% Similarity=0.143 Sum_probs=169.4
Q ss_pred HHhhCCC-CCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCC---CChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082 109 WALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG---LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (619)
Q Consensus 109 ~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 184 (619)
.+|.+|+ .|+.+.+... ++..+..+|.+|++|+.+.+..+. ++.....+|..+.+|+.+.+..+ +..+...+|
T Consensus 57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3455553 4677766553 455555666667777777665542 44444455666666665555432 333333455
Q ss_pred hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCc
Q 007082 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264 (619)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 264 (619)
..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +..+....+....|+++.+..+
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCCCSEEEECTT
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce--------------------eeEeccccccccceeEEEECCc
Confidence 55556666555432 23333344555544444444322 3333334443444555554432
Q ss_pred cccchhHHHhhhccCCCcEEeccCCCcchhh--hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCch
Q 007082 265 TFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342 (619)
Q Consensus 265 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 342 (619)
...-. ...+..+..+.............. .+............. ... ..+..+.+.. .+....
T Consensus 193 ~~~i~--~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~ip~-~v~~i~ 257 (394)
T 4gt6_A 193 VTRIG--TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQ-REDPAFKIPN-GVARIE 257 (394)
T ss_dssp CCEEC--TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTT-CCCSEEECCT-TEEEEC
T ss_pred ccccc--cchhhhccccceecccccccccccceeeccccccccccccc-----------ccc-cccceEEcCC-cceEcc
Confidence 21111 112334445554444333222210 001100000000000 000 2333343322 222222
Q ss_pred HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC
Q 007082 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 422 (619)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 422 (619)
...| ..|..|+.+.+.++. ......+|.++++|+.+.+. +.++..... +|.+|.+|+.+++..+
T Consensus 258 ~~aF-~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~------------aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 258 THAF-DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPES------------VFAGCISLKSIDIPEG- 321 (394)
T ss_dssp TTTT-TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTT------------TTTTCTTCCEEECCTT-
T ss_pred ccee-eecccccEEeccccc-ceecCcccccccccccccCC-CcccccCce------------eecCCCCcCEEEeCCc-
Confidence 2233 567888888886543 33444567788888888885 344433333 7888889999988764
Q ss_pred CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCc
Q 007082 423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (619)
Q Consensus 423 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 494 (619)
++.....+|.+|.+|+.+.+..+ ++.+....|.+|++|+.+++.++... ...+..+.+|+.+.+..|.
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 55556678888889999988654 77777778888999999999887643 2356667788888776654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.2e-13 Score=132.32 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=83.8
Q ss_pred hccCCcCCEEEccC-CCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082 407 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (619)
Q Consensus 407 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (619)
+..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 45666778888875 777777677788888888888888888888888888888888888888888877666666555 9
Q ss_pred cEEEcCCCccCCHHHHHHHHHhCC
Q 007082 486 KLLDLHGGWLLTEDAILQFCKMHP 509 (619)
Q Consensus 486 ~~l~l~~n~~~~~~~~~~~~~~~~ 509 (619)
+.|++.+|+|.|+|.+.++..|..
T Consensus 106 ~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 106 QELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp CEEECCSSCCCCCGGGHHHHHHHH
T ss_pred eEEEeeCCCccCCCccHHHHHHHH
Confidence 999999999999999999888753
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=8.8e-15 Score=134.19 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=93.2
Q ss_pred HHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchh
Q 007082 320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 399 (619)
Q Consensus 320 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 399 (619)
.+..+ ++|++|++++|.+++.. .+ +.+++|++|++++|.++.. +..+..+++|++|++++|++++. |
T Consensus 43 ~~~~l-~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~------- 109 (198)
T 1ds9_A 43 TLSTL-KACKHLALSTNNIEKIS--SL-SGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S------- 109 (198)
T ss_dssp HHHHT-TTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-------
T ss_pred HHhcC-CCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-------
Confidence 55555 77788888777777743 33 4577888888888777753 33455567788888888887763 2
Q ss_pred hhhhHHhhccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCCchhHH----------hhcCCCCCCEEEcCC
Q 007082 400 LVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLH----------QLSSLSKLTNLSIRD 468 (619)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~ 468 (619)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +
T Consensus 110 ------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 110 ------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp ------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred ------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 36667788888888888775332 4677788888888888887666543 377788999886 6
Q ss_pred CccCc
Q 007082 469 AVLTN 473 (619)
Q Consensus 469 n~l~~ 473 (619)
|.++.
T Consensus 182 ~~i~~ 186 (198)
T 1ds9_A 182 MPVDV 186 (198)
T ss_dssp GGGTT
T ss_pred cccCH
Confidence 76654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1.2e-12 Score=116.31 Aligned_cols=108 Identities=16% Similarity=0.244 Sum_probs=89.3
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (619)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (619)
..+.+++++|.++..+. .+ .++|++|+|++|++++..+. .|.++++|++|+|++|++++..+..|
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPG------------VFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChh------------hhcCcccCCEEECCCCCcCccChhhc
Confidence 35678888888776442 22 47888999999998888777 78889999999999999987777778
Q ss_pred cCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
..+++|++|+|++|+++++.+..|..+++|+.|+|++|+++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8899999999999999988887888999999999999988753
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=2.4e-12 Score=114.87 Aligned_cols=107 Identities=11% Similarity=0.197 Sum_probs=88.0
Q ss_pred CcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc
Q 007082 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (619)
Q Consensus 353 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (619)
-+.+++++|.++..+. .+ .++|++|++++|++++..|. .|.++++|++|+|++|++++..+..|.
T Consensus 14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPG------------VFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHH------------HhcCCcCCCEEECCCCCCCccChhHhC
Confidence 4678888888766443 22 37888999999998888777 788899999999999999877666778
Q ss_pred CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (619)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 474 (619)
.+++|++|+|++|+++++++..|..+++|+.|+|++|++...
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 899999999999999988777788899999999999988743
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=7.9e-12 Score=127.65 Aligned_cols=325 Identities=18% Similarity=0.206 Sum_probs=193.8
Q ss_pred HHHhcCC-CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCC--CCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHh
Q 007082 84 AYLGAFR-YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALL 160 (619)
Q Consensus 84 ~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~--~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 160 (619)
.+|.+++ .|+.+.+... ++.....+|.+|++|+.+.+..+ ..++..+..+|..|.+|+.+.+..+ ++.....+|
T Consensus 57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3577775 6999999863 67777788999999999999765 2466667788889999999888754 555666788
Q ss_pred hcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC----CCCCCCCCcEE
Q 007082 161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT----KLPNISSLECL 236 (619)
Q Consensus 161 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----~l~~l~~L~~L 236 (619)
..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ +......+|.+ .+|+.+.+..+... .+..+..++..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccccee
Confidence 99999999999754 45555678889999999999764 55555666754 56888777654221 23345556555
Q ss_pred EcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCC
Q 007082 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIG 314 (619)
Q Consensus 237 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~ 314 (619)
.........+...++.........+. .+.....+..+.+... ++.+ ..|..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c-------------- 264 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSC-------------- 264 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTC--------------
T ss_pred cccccccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeec--------------
Confidence 55444333222211110000000000 0001112222222111 1111 233444
Q ss_pred hhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhcc
Q 007082 315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV 394 (619)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 394 (619)
..|+.+.+.++. .......+ ..|++|+.+.+. +.++.....+|.++.+|+.+.|..+ ++..-..
T Consensus 265 -----------~~L~~i~lp~~~-~~I~~~aF-~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~- 328 (394)
T 4gt6_A 265 -----------AYLASVKMPDSV-VSIGTGAF-MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD- 328 (394)
T ss_dssp -----------SSCCEEECCTTC-CEECTTTT-TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT-
T ss_pred -----------ccccEEeccccc-ceecCccc-ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh-
Confidence 445555554321 11222222 457777777775 3455555567778888888888654 4333333
Q ss_pred ccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082 395 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (619)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 471 (619)
+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... ...+..+..|+.+.+..|.+
T Consensus 329 -----------aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 -----------AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -----------TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred -----------HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 7888888888888654 66566778888888888888877432 24667778888888876654
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1e-10 Score=117.23 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred EEEccCC-CCCCchHHHHHhcCCCCcEEEccC-CCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082 330 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (619)
Q Consensus 330 ~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~ 407 (619)
.++.+++ .++..+. + ..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..+. .|
T Consensus 12 ~v~~~~~n~l~~ip~--l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------AF 76 (347)
T ss_dssp CEECCSSCCCTTTTT--S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------GG
T ss_pred EEEcCCCCCCCccCC--C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------Hh
Confidence 3455554 5554322 2 4455555555554 555555555555555555555555555555554 45
Q ss_pred ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (619)
.++++|++|+|++|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5555555555555555544444444333 555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=6.6e-10 Score=112.85 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=44.2
Q ss_pred HhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCC
Q 007082 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN 165 (619)
Q Consensus 86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 165 (619)
+....+|+.+.+.. .++..+..+|.+|.+|+.++|..+ ++.....+|.++ +|+.+.+..+ +......+|..+ +
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 34455677777764 255555556667777777777543 445555556555 4555555432 333333344443 5
Q ss_pred CCEEEcCC
Q 007082 166 LSVLDLGG 173 (619)
Q Consensus 166 L~~L~L~~ 173 (619)
|+.+.+..
T Consensus 115 L~~i~lp~ 122 (379)
T 4h09_A 115 LDDFEFPG 122 (379)
T ss_dssp CSEEECCT
T ss_pred cccccCCC
Confidence 66666554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=1.3e-09 Score=110.54 Aligned_cols=139 Identities=13% Similarity=0.231 Sum_probs=78.2
Q ss_pred CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (619)
Q Consensus 326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 405 (619)
..|+.+.+..+ +.......+ ..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------ 280 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------ 280 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------
T ss_pred cccceeeeccc-eeEEccccc-cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc------------
Confidence 45555555432 222222222 34666666666554 44444455666666776666433 3222222
Q ss_pred hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCC
Q 007082 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 482 (619)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 482 (619)
.|.+|++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.+....|.+|++|+.+.+..+ ++.....+|..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 5667777777777666666555666777777777777543 55555566777777777766543 444444555554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.03 E-value=2.3e-10 Score=99.88 Aligned_cols=89 Identities=20% Similarity=0.418 Sum_probs=61.3
Q ss_pred CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCC----CCCCEEeCCCCCCCChhhHhhhcCCCC
Q 007082 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSIST 141 (619)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~L~~L~L~~~~~l~~~~~~~l~~l~~ 141 (619)
.|+.||++++. ++......+..|++|++|+|++|..+++..+..++.+ ++|++|+|++|..+++.+...+..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47777777776 6555555566777777777777766777777777653 467777777776677777777777777
Q ss_pred CcEEEccCC-CCChh
Q 007082 142 LEKLWLSET-GLTAD 155 (619)
Q Consensus 142 L~~L~L~~~-~~~~~ 155 (619)
|++|++++| .+++.
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 777777776 35543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=3.9e-09 Score=105.14 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=35.4
Q ss_pred CCCCCEEecCCCCCCchhHHhhc---CCCCCCEEEcCCCccCchhhcc----CCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082 434 FKELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWLLTEDAILQFCK 506 (619)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 506 (619)
+++|+.|+|.+|.+++..+..+. .+++|++|+|+.|.+++..+.. +..+++|+.|++++|++ .+.....+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i-~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC-CHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC-CHHHHHHHHH
Confidence 45555565555555443322222 3455666666666655532222 12235666666665543 4444444444
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.90 E-value=2.3e-09 Score=93.54 Aligned_cols=89 Identities=20% Similarity=0.400 Sum_probs=76.2
Q ss_pred CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCC----CCCcEEEccCC-CCChhHHHHhhcCC
Q 007082 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSET-GLTADGIALLSSLQ 164 (619)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l----~~L~~L~L~~~-~~~~~~~~~~~~l~ 164 (619)
.+|++|++++|. +++.++..+.+|++|++|+|++|..+++.....++.+ ++|++|++++| .+++.....++.++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 369999999998 8998888889999999999999988999999888875 47999999988 58888888888888
Q ss_pred CCCEEEcCCCC-CChh
Q 007082 165 NLSVLDLGGLP-VTDL 179 (619)
Q Consensus 165 ~L~~L~L~~n~-~~~~ 179 (619)
+|++|+++++. +++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 99999998885 5553
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.2e-08 Score=101.63 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=58.5
Q ss_pred cCCCCCEEeCcCCCCChhHHHHHHh--cCCCCcEEEccCCCCCCchHHHHH---hcCCCCcEEEccCCCCChHHHHHhhC
Q 007082 299 QMKALEHLDLSSSMIGDDSVEMVAC--VGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMSM 373 (619)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~ 373 (619)
.+++|++|++.+|.+++.....+.. .+++|++|+|+.|.+++.+...+. ..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4677888888777777655555543 226788888888887776555543 23678888888888888766665553
Q ss_pred -CCCCcEEEccCCc
Q 007082 374 -MPSLKFIDISNTD 386 (619)
Q Consensus 374 -~~~L~~L~L~~n~ 386 (619)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 4557787776
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=2.6e-08 Score=89.47 Aligned_cols=122 Identities=20% Similarity=0.140 Sum_probs=81.8
Q ss_pred hHHHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCC
Q 007082 80 AEWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG 151 (619)
Q Consensus 80 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~ 151 (619)
..+...+...+.|++|+|++|+.+.+..... +...++|++|+|++| .+.+.+...++ ..+.|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455566777888888888872376655444 345677888888888 56666554443 45778888888888
Q ss_pred CChhHH----HHhhcCCCCCEEEc--CCCCCChhHHH----HhhcCCCCCEEEccCCccCc
Q 007082 152 LTADGI----ALLSSLQNLSVLDL--GGLPVTDLVLR----SLQVLTKLEYLDLWGSQVSN 202 (619)
Q Consensus 152 ~~~~~~----~~~~~l~~L~~L~L--~~n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~ 202 (619)
+.+... ..+...+.|++|+| ++|.+.+.... .+...+.|++|++++|.+..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 877653 34455677888888 77777765433 33456778888888877653
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=4.1e-08 Score=88.17 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=82.3
Q ss_pred HHHhhCCCCCCEEeCCCCCCCChhhHhhh----cCCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChh
Q 007082 108 LWALTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDL 179 (619)
Q Consensus 108 ~~~l~~~~~L~~L~L~~~~~l~~~~~~~l----~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~ 179 (619)
...+..+++|++|+|++|..+.+.+...+ ...++|++|+|++|.+.+.... .+...+.|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34566888999999999855676655444 4678899999999999876543 445668899999999998876
Q ss_pred H----HHHhhcCCCCCEEEc--cCCccCchhhH----hhcCCCCCCEEecCCCCC
Q 007082 180 V----LRSLQVLTKLEYLDL--WGSQVSNRGAA----VLKMFPRLSFLNLAWTGV 224 (619)
Q Consensus 180 ~----~~~~~~l~~L~~L~l--~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l 224 (619)
. ...+...+.|++|++ ++|.+.+.... .+...++|+.|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4 344556788999999 77888765433 334445555555555543
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.42 E-value=1.6e-07 Score=78.36 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=61.8
Q ss_pred CEEecCCCCCC--chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeee-e
Q 007082 438 IHLSLRNASLT--DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV-W 514 (619)
Q Consensus 438 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~-~ 514 (619)
..++.+++.++ .+ |..+ -++|+.|+|++|+|+...+..|..+++|+.|+|++|||.|+|.+.|+..|...... .
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp TEEECCSSCCCTTTS-CSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred CEEEeCCCCCccccC-CCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 36777777776 43 3222 24688888888888888777888889999999999999999999999988754321 1
Q ss_pred cccccccCCCCC
Q 007082 515 HELSVICPSDQI 526 (619)
Q Consensus 515 ~~~~~~~~~~~~ 526 (619)
......|..|..
T Consensus 88 ~~~~~~C~~P~~ 99 (130)
T 3rfe_A 88 PYRDLRCVAPPA 99 (130)
T ss_dssp GGTTCBCCBSTT
T ss_pred cccCcEeCcChH
Confidence 233445655543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1e-07 Score=89.85 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=8.6
Q ss_pred CCCCCcEEEccCCccCc
Q 007082 373 MMPSLKFIDISNTDIKG 389 (619)
Q Consensus 373 ~~~~L~~L~L~~n~~~~ 389 (619)
.+++|+.|+|++|++++
T Consensus 168 ~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HCTTCCEEECTTSCCCC
T ss_pred hCCCCCEEECCCCCCCC
Confidence 34555555555555544
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2.4e-07 Score=87.26 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=44.9
Q ss_pred ccCCcCCEEEccCCCCCC--CCcccccCCCCCCEEecCCCCCCchhHHhhcCCC--CCCEEEcCCCccCchhh-------
Q 007082 408 QNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS--KLTNLSIRDAVLTNSGL------- 476 (619)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~------- 476 (619)
.++++|+.|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456666666666666665 2334455666666666666666664 1222333 66666666666664322
Q ss_pred ccCCCCCCCcEEE
Q 007082 477 GSFKPPRSLKLLD 489 (619)
Q Consensus 477 ~~~~~~~~L~~l~ 489 (619)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1233456666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=9.1e-05 Score=65.78 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCCC
Q 007082 81 EWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL 152 (619)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~~ 152 (619)
.+...+..-+.|++|+|++++.+.+..... +..-+.|++|+|++| .+.+.+...++ .-+.|++|+|+.|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344445556778888887753466655444 334567888888877 66666655554 346777777777777
Q ss_pred ChhHHH----HhhcCCCCCEEEcCCC---CCChhH----HHHhhcCCCCCEEEccCCcc
Q 007082 153 TADGIA----LLSSLQNLSVLDLGGL---PVTDLV----LRSLQVLTKLEYLDLWGSQV 200 (619)
Q Consensus 153 ~~~~~~----~~~~l~~L~~L~L~~n---~~~~~~----~~~~~~l~~L~~L~l~~n~i 200 (619)
.+.+.. ++..-+.|++|+|+++ .+.+.. ...+..-+.|++|+++.+.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 766543 3344456777777654 344432 23444556777777766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=0.00015 Score=64.34 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=76.7
Q ss_pred hhCCCCCCEEeCCCCCCCChhhHhhh----cCCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChhHHH
Q 007082 111 LTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLR 182 (619)
Q Consensus 111 l~~~~~L~~L~L~~~~~l~~~~~~~l----~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~~ 182 (619)
+.+-+.|++|+|+++..+.+.+...+ ..-+.|+.|+|++|.+.+.... ++..-+.|++|+|++|.|.+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45667899999988656777665444 3557899999999998876543 445668899999999998876555
Q ss_pred Hh----hcCCCCCEEEccCC---ccCch----hhHhhcCCCCCCEEecCCC
Q 007082 183 SL----QVLTKLEYLDLWGS---QVSNR----GAAVLKMFPRLSFLNLAWT 222 (619)
Q Consensus 183 ~~----~~l~~L~~L~l~~n---~i~~~----~~~~~~~~~~L~~L~l~~n 222 (619)
.+ ..-+.|++|+|+++ .+.+. +...+..-+.|+.|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 44 34567888888754 44433 2334555556666665544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.002 Score=53.27 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=36.0
Q ss_pred EEEccCCCCC-CCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082 415 RLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (619)
Q Consensus 415 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 472 (619)
.++.++++++ ..+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2344332 345777777777777776667777777777777777653
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.36 E-value=0.0082 Score=37.88 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=5.1
Q ss_pred eeecccccchh
Q 007082 576 FFVCFSKTDQR 586 (619)
Q Consensus 576 ~~~~~~~~~~r 586 (619)
++++++|++++
T Consensus 31 ~~~~~RRr~~~ 41 (44)
T 2ks1_B 31 IGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHhhhhHhh
Confidence 44455544443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=88.31 E-value=0.016 Score=36.40 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.1
Q ss_pred eeecccccchh
Q 007082 576 FFVCFSKTDQR 586 (619)
Q Consensus 576 ~~~~~~~~~~r 586 (619)
+++++||++++
T Consensus 30 ~~~~~RRRr~~ 40 (44)
T 2l2t_A 30 FAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHhhhhhhh
Confidence 44455444443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=82.18 E-value=0.035 Score=34.81 Aligned_cols=7 Identities=0% Similarity=-0.130 Sum_probs=3.9
Q ss_pred cccceee
Q 007082 557 LGGVLLF 563 (619)
Q Consensus 557 i~~v~~~ 563 (619)
+++.+++
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5555555
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=75.34 E-value=0.11 Score=31.69 Aligned_cols=20 Identities=5% Similarity=-0.177 Sum_probs=12.2
Q ss_pred ccccccceeecccccccccc
Q 007082 554 HSFLGGVLLFSMRYSFKCIH 573 (619)
Q Consensus 554 ~~~i~~v~~~~~~~~~~~~~ 573 (619)
...|+|+++++++.+++++.
T Consensus 10 ~GaIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHH
Confidence 33477777777765554444
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.39 E-value=9.6 Score=29.13 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=25.0
Q ss_pred CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082 423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468 (619)
Q Consensus 423 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 468 (619)
++.....+|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455666666666666543 3444444566666666666655
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.51 E-value=8.7 Score=29.37 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCC
Q 007082 444 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 493 (619)
Q Consensus 444 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n 493 (619)
+..++.+....|.+|++|+++.|-.+ ++.+....|..|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34577777788999999999999875 55566778999999999998764
No 171
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.88 E-value=2.1 Score=25.31 Aligned_cols=8 Identities=0% Similarity=0.006 Sum_probs=3.3
Q ss_pred eeeccccc
Q 007082 576 FFVCFSKT 583 (619)
Q Consensus 576 ~~~~~~~~ 583 (619)
+.+++||+
T Consensus 27 ~~~~iRRr 34 (35)
T 1iij_A 27 VGILIKRR 34 (35)
T ss_dssp TTHHHHHC
T ss_pred hheEEeec
Confidence 33444443
Done!